WorldWideScience

Sample records for susceptible rice cultivar

  1. Role of gamma-oryzanol in drought-tolerant and susceptible cultivars of rice (Oryza sativa L.).

    Science.gov (United States)

    Kumar, M S Sujith; Dahuja, Anil; Rai, R D; Walia, Suresh; Tyagi, Aruna

    2014-02-01

    Drought-tolerant cultivars and their phytochemical composition, which has a role in providing drought tolerance are gaining importance. In this study, rice bran oil and semi-purified oryzanol (SPO) obtained from five rice (Oryza sativa L.) cultivars, namely P1401 and PB1 (drought-susceptible) and N22, PNR381 and APO (drought-tolerant) were analyzed for the gamma-oryzanol content, an antioxidant present in considerable amount in the rice bran. The higher level of gamma-oryzanol and its antioxidant activity was observed in drought-tolerant cultivars (N22, PNR381 and APO) as compared to drought-susceptible (PB1 and P1401), suggesting the role of gamma-oryzanol in drought tolerance, as antioxidants are known to play an important role by scavenging free radicals. The total antioxidant activity of gamma-oryzanol might be attributed to 24-methylene cycloartanyl ferulate, a major component of gamma-oryzanol. By enhancing the level of active oryzanol components identified in this study by genetic and molecular means could impart increased drought tolerance.

  2. Rice brown spot and susceptibility of some cultivars in north of Iran.

    Science.gov (United States)

    Safari-Motlagh, M R; Hedjaroude, Gh A; Zad, S J; Okhovvat, S M

    2002-01-01

    Rice brown spot is one of the important diseases in the world including Iran. 91 samples of the infected plants such as leaves and panicles were collected from different locations of Guilan province, North of Iran and the fungi isolated and studied for pathogenicity. Three species of Bipolaris (B. oryzae, Bipolaris sp. and B. cf. victoriae) were isolated more than other species with serious effects on the plants respectively. Reactions of 8 cultivars of rice, Neda, Nemat, Sepeed-rood, Bejar, Khazar, Domsephid, Hassan-saraee and Binam were studied in greenhouse to Bipolaris sp. and B. cf. victoriae in two stages of growth, on leaves and panicles, respectively. The results showed that in seedling stage on leaf there was no significant difference between these cultivars in case of infection rates. In heading stage, although there was no significant difference according to variance analysis, but according to Duncan test (5%) they could be divided into 3 groups. Neda, Sepeed-rood, Khazar and Binam, with the lowest infection rate, were in the first group Bejar, Domsephid and Hassan-saraee were classified into the second group and Nemat was in the third one. Curvularia sp., Nigrospora sp., Pyricularia grisea and Alternaria sp. were with minor prevalence in infection of the plants.

  3. Suscetibilidade de biótipos de arroz-vermelho e de cultivares de arroz irrigado ao herbicida imazethapyr Susceptibility of red rice biotypes and commercial rice cultivars to imazethapyr

    Directory of Open Access Journals (Sweden)

    S.H.B. Dornelles

    2010-01-01

    Full Text Available Para avaliar a suscetibilidade de biótipos de arroz-vermelho(Oryza sativa e cultivares comerciais de arroz ao herbicida imazethapyr, realizou-se um ensaio em casa de vegetação com cinco biótipos de arroz-vermelho (acessos Santa Maria 5, Pelotas 3, Rio Pardo 1, Manoel Viana 2 e Catuçaba 1, dois cultivares comerciais de arroz: Clearfield® (IRGA 422 CL e Puitá INTA CL e um cultivar convencional (IRGA 417. Utilizou-se a metodologia de curvas de dose-resposta proposta por Seefeldt et al. (1995. A metodologia de curvas de resposta foi gerada a partir dos parâmetros do modelo logístico e dos valores de I50. Os biótipos de arroz-vermelho e os cultivares foram submetidos a seis doses do herbicida imazethapyr (0; 33,12; 66,25; 132,5; 265,0; e 530,0 g i.a. ha-1. As plantas de arroz foram contadas e coletadas no 20º dia após a aplicação dos tratamentos. A análise do percentual de dano foi realizada através de avaliação visual da fitointoxicação (%, massa verde e massa seca das plantas. Analisando as curvas e os resultados da análise da variância, pode-se inferir que os cultivares Clearfield Irga 422 CL e Puitá INTA CL foram significativamente iguais ao biótipo de arroz-vermelho Catuçaba 1, resistindo a doses de imazethapyr superiores à recomendada em campo para o sistema Clearfield®. Os biótipos Manoel Viana 2, Santa Maria 5 e Pelotas 3 agruparam-se com o cultivar convencional IRGA 417, sendo suscetíveis à dose comercial do herbicida. O biótipo Rio Pardo 1 também é resistente ao herbicida imazethapyr, porém menos resistente que o biótipo Catuçaba 1.To evaluate the susceptibility of biotypes of red rice (Oryza sativa and commercial rice cultivars to the herbicide imazethapyr, a greenhouse assay was conducted with five red rice biotypes (accesses Santa Maria 5, Pelotas 3, Rio Pardo 1, 2 and Manoel Viana Catuçaba 1, two commercial rice cultivars: Clearfield ® (Irga CL 422 and CL Puit INTA, and a conventional cultivar (Irga

  4. Two-component cultivar mixtures reduce rice blast epidemics in an upland agrosystem

    OpenAIRE

    Raboin, L. M.; Ramanantsoanirina, A.; Dusserre, J.; Razasolofonanahary, F.; Tharreau, Didier; Lannou, Christian; Sester, M.

    2012-01-01

    The effect of two-component rice cultivar mixtures on the control of rice blast disease was studied in three different experiments under rainfed upland conditions in the Madagascar Highlands. The mixtures involved a susceptible cultivar (either susceptible or very susceptible) and a resistant cultivar in different mixture arrangements (random or row mixtures) and with different proportions of the susceptible cultivar (50, 20 and 16.7%), which were compared to the susceptible cultivar grown in...

  5. Panicle blast and canopy moisture in rice cultivar mixtures.

    Science.gov (United States)

    Zhu, You-Yong; Fang, Hui; Wang, Yun-Yue; Fan, Jin Xiang; Yang, Shi-Sheng; Mew, Twng Wah; Mundt, Christopher C

    2005-04-01

    ABSTRACT Glutinous rice cultivars were sown after every fourth row of a nonglutinous, hybrid cultivar in an additive design. The glutinous cultivars were 35 to 40 cm taller and substantially more susceptible to blast than was the nonglutinous cultivar. Interplanting of glutinous and nonglutinous rice reduced the incidence and severity of panicle blast on the glutinous cultivars by >90%, and on the nonglutinous cultivar by 30 to 40%. Mixing increased the per unit area yield of glutinous rice by 80 to 90% relative to pure stand, whereas yield of the nonglutinous cultivar was essentially unaffected by mixing. To determine whether the different plant heights and canopy structures may contribute to a microclimate that is less favorable to blast infection, we monitored the moisture status of the glutinous cultivars in pure stand and mixture at 0800 h by measuring relative humidity at the height of the glutinous panicles using a swing psychrometer and by visually estimating the percentage of leaf area covered by dew. Averaged over the two seasons, the number of days of 100% humidity at 0800 h was 20.0 and 2.2 for pure stands and mixtures, respectively. The mean percentage of glutinous leaf area covered by dewwas 84 and 36% for the pure stands and mixtures, respectively. Although other mechanisms also were operative, reduced leaf wetness was likely a substantial contributor to panicle blast control in the mixtures.

  6. Genetic base of Brazilian irrigated rice cultivars

    Directory of Open Access Journals (Sweden)

    Hudson de Oliveira Rabelo

    2015-08-01

    Full Text Available The aim of this study was to estimate the genetic base of Brazilian irrigated rice cultivars released in the period from 1965 to 2012. The genealogies of the cultivars were obtained based on information from marketing folders, websites, crossings records, and scientific articles. The following factors were calculated: relative genetic contribution (RGC, accumulated genetic contribution (AGC, frequency (in percentage of each ancestor in the genealogy (FAG, number of ancestors that constitute each cultivar (NAC,number of ancestors responsible for 60%, 70%, 80% and 90% of the genetic base (NAGB, and average number of ancestor per cultivar (ANAC. The cultivars were also grouped based on the period of release (1965-1980, 1981-1990, 1991-2000 and 2001-2012. For each grouping, the previously described factors were also estimated. A total of 110 cultivars were studied and it was concluded that the genetic base of Brazilian irrigated rice cultivars is narrow.

  7. Relative susceptibility of banana cultivars to Xanthomonas ...

    African Journals Online (AJOL)

    short time making the disease one of the most dreaded in banana. The disease affects almost all varieties of commonly grown banana cultivars. Some knowledge of the relative susceptibility of banana cultivars would be extremely useful and could be a basis for management strategies for BXW. Ten banana cultivars were ...

  8. Variation of photosynthetic tolerance of rice cultivars (Oryza sativa L ...

    African Journals Online (AJOL)

    STORAGESEVER

    2010-03-01

    Mar 1, 2010 ... and cultivars that have intermediate tolerance to chilling in the light such as hybrid rice cultivar. Photosynthetic characteristics of two cultivars tolerant (c.v. Taipei309 and Wuyujing3), two cultivars sensitive (c.v.CA212 and Pusa) and two intermediated tolerant (c.v. Liangyoupeijiu and Shanyou63) to.

  9. Higher yields and lower methane emissions with new rice cultivars.

    Science.gov (United States)

    Jiang, Yu; van Groenigen, Kees Jan; Huang, Shan; Hungate, Bruce A; van Kessel, Chris; Hu, Shuijin; Zhang, Jun; Wu, Lianhai; Yan, Xiaojun; Wang, Lili; Chen, Jin; Hang, Xiaoning; Zhang, Yi; Horwath, William R; Ye, Rongzhong; Linquist, Bruce A; Song, Zhenwei; Zheng, Chengyan; Deng, Aixing; Zhang, Weijian

    2017-11-01

    Breeding high-yielding rice cultivars through increasing biomass is a key strategy to meet rising global food demands. Yet, increasing rice growth can stimulate methane (CH4 ) emissions, exacerbating global climate change, as rice cultivation is a major source of this powerful greenhouse gas. Here, we show in a series of experiments that high-yielding rice cultivars actually reduce CH4 emissions from typical paddy soils. Averaged across 33 rice cultivars, a biomass increase of 10% resulted in a 10.3% decrease in CH4 emissions in a soil with a high carbon (C) content. Compared to a low-yielding cultivar, a high-yielding cultivar significantly increased root porosity and the abundance of methane-consuming microorganisms, suggesting that the larger and more porous root systems of high-yielding cultivars facilitated CH4 oxidation by promoting O2 transport to soils. Our results were further supported by a meta-analysis, showing that high-yielding rice cultivars strongly decrease CH4 emissions from paddy soils with high organic C contents. Based on our results, increasing rice biomass by 10% could reduce annual CH4 emissions from Chinese rice agriculture by 7.1%. Our findings suggest that modern rice breeding strategies for high-yielding cultivars can substantially mitigate paddy CH4 emission in China and other rice growing regions. © 2017 John Wiley & Sons Ltd.

  10. Molecular characterization of traditional and improved rice cultivars ...

    African Journals Online (AJOL)

    Sadia

    2012-06-05

    Jun 5, 2012 ... commercial varieties and primitive cultivars of Rice (Oryza sativa L.) were established by using random amplified polymorphic DNAs .... RAPD markers have also been used to identify and tag the important genes for ... 35 commercial varieties and obsolete cultivars (Table 1) of rice from germplasm unit of ...

  11. Competitividade de cultivares de arroz irrigado com cultivar simuladora de arroz-vermelho Competitiveness of flooded rice cultivars with a red rice simulating cultivar

    Directory of Open Access Journals (Sweden)

    Alvadi Antonio Balbinot Junior

    2003-01-01

    Full Text Available Características morfológicas e fisiológicas de plantas cultivadas podem afetar sua habilidade competitiva com plantas daninhas. Este trabalho objetivou investigar a competitividade de cultivares de arroz irrigado (Oryza sativa L. com cultivar simuladora de arroz-vermelho. Investigou-se na safra 2000/2001 o comportamento de oito genótipos de arroz, cultivados na presença ou ausência da cultivar de arroz EEA 406, que simulou infestação de arroz-vermelho. Aos 45 e aos 60 dias após a semeadura, avaliou-se a resposta da simuladora em relação às cultivares de arroz. Na colheita, foram determinados estatura de planta, componentes do rendimento e produtividade das plantas. A cultivar tardia IR 841 suprimiu o crescimento da simuladora, apresentando com a cultivar superprecoce Ligeirinho as menores reduções de produtividade quando em competição. Por sua vez, as cultivares IAS 12-9 Formosa e Bluebelle permitiram maior crescimento e produção de sementes pela concorrente, também sofrendo as maiores reduções de produtividade de grãos na condição de competição.Morphologic and physiologic characteristics of crop plants can affect their competitive ability with weeds. This research aimed to investigate competitiveness of flooded rice (Oryza sativa L. cultivars with a red rice simulating genotype. It was investigated, during the 2000/2001 warm season, the behavior of eight rice genotypes, grown in presence or absence of the rice cultivar EEA 406, simulating a red rice infestation. At 45 and 60 days after rice seeding, it was evaluated the response of red rice mimicker genotype in relation to rice cultivars. At harvest, it was determined plant height, yield components, and grain yield of the cultivars. The late season genotype IR 841 suppressed growth of the simulative cultivar, presenting, together with the veryearly cultivar Ligeirinho, the lowest reductions in grain yield under competition. In opposite, IAS 12-9 Formosa and Bluebelle

  12. Variation of photosynthetic tolerance of rice cultivars ( Oryza sativa L ...

    African Journals Online (AJOL)

    Forty-two genotypes from the rice germplasm (Oryza sativa L.) were identified under chilling temperature in the light at bud, seedling and booting stages and divided into three basic types; cultivars tolerant to chilling in the light such as japonica, cultivars sensitive to chilling in the light such as indica and cultivars that have ...

  13. Elemental Composition of Two Rice Cultivars under Potentially Toxic an Aquept and Aquent

    Directory of Open Access Journals (Sweden)

    Adesola Olutayo OLALEYE

    2009-12-01

    Full Text Available Iron toxicity is a major nutrient disorder affecting rice production of wetland rice in the irrigated and rainfed ecosystem in West Africa sub-region. Little attention has been paid to evaluating nutrient contents of rice cultivars grown on such soils and their relationship to the iron toxicity scores, grain yield and dry matter yields. A pot experiment was conducted on two potentially Fe-toxic soils (Aeric Fluvaquent and Aeric Tropaquept. The experiment was a 2 x 2 x 4 factorial experiment with three replicates in arranged in a randomized fashion. The factors were two soil types, two rice cultivars (ITA 212 and tolerant (Suakoko 8 and four Fe 2+ levels (control, 1000, 3000 and 4000 mg L-1. The result showed that for both susceptible cultivar (ITA 212 and the relatively tolerant (Suakoko 8 cultivar, little or no differences were observed in their elemental composition with regards to micro and macro-nutrients. For the susceptible cultivar, results showed that none of the tissue nutrients significantly relates to iron toxicity scores (ITS, grain yield and dry matter yield on both soil types. However, for the tolerant cultivar, ITS was observed to be significantly related to tissue K and P contents on the two soil types respectively. Tissue Ca and Mg were observed to be significantly related to the dry matter yield (DMY on Aeric Tropquept. It could be concluded that for these rice cultivars grown on two potentially Fe-toxic soils, different tissue nutrients may trigger the manifestation of bronzing or yellowing symptoms of rice cultivars.

  14. Morphological variation of 20 local rice cultivars of East Kalimantan

    Directory of Open Access Journals (Sweden)

    FITRI HANDAYANI

    2017-03-01

    Full Text Available Abstract. Handayani F, Sumarmiyati, Ahmadi NR. 2016. Morphological variation of 20 local rice cultivars of East Kalimantan. Pros Sem Nas Masy Biodiv Indon 3: 88-93. High diversity of local rice is very important in rice breeding program as a gene pool for valuable traits such as resistance to specific disease and tolerance against environmental stresses (Al, Fe, acidity, etc. East Kalimantan is a province which has so many local rice cultivars either lowland, upland or tidal swamp rice. Unfortunately, there is still limited scientific information about local rice genetic diversity in East Kalimantan, whereas it is an important basic information for rice breeding program. The aim of this research was to study the morphological variation of 20 local rice cultivars from some regions in East Kalimantan. The research was conducted at Lempake trial field, Samarinda in April-September 2016. The result showed that the cultivars had variability in morphological characters. Plant profile was medium to high while some tillers were little and very little. The color of lemma and palea was yellowish straw in 17 cultivars while the rest had brown lines in yellowish straw background. Seed length ranged between 7.3-9.6 mm, while seed width ranged between 1.9-3.3 mm, and seed thickness ranged between 1.5-2.1 mm. The shape of the rice grain varied between medium grain (length: width = 2.1-3.0 or long grain (length: width > 3.0.

  15. Cadmium accumulation in different rice cultivars and screening for pollution-safe cultivars of rice

    Energy Technology Data Exchange (ETDEWEB)

    Yu Hui [State Key Laboratory for Biocontrol, also School of Life Sciences, Sun Yat-sen University, Guangzhou 510275 (China); Wang Junli [State Key Laboratory for Biocontrol, also School of Life Sciences, Sun Yat-sen University, Guangzhou 510275 (China); Fang Wei [Biology Department, Long Island University, Brooklyn, NY 11201 (United States); Yuan Jiangang [State Key Laboratory for Biocontrol, also School of Life Sciences, Sun Yat-sen University, Guangzhou 510275 (China); Yang Zhongyi [State Key Laboratory for Biocontrol, also School of Life Sciences, Sun Yat-sen University, Guangzhou 510275 (China)]. E-mail: adsyzy@mail.sysu.edu.cn

    2006-11-01

    Large areas of contaminated land are being used for agricultural production in some countries due to the high demand for food. To minimize the influx of pollutants to the human food chain through consumption of agricultural products, we propose the concept of pollution-safe cultivars (PSCs), i.e. cultivars whose edible parts accumulate a specific pollutant at a level low enough for safe consumption, even when grown in contaminated soil. We tested the feasibility of the PSC concept by growing 43 cultivars of paddy rice (Oryza sativa L., including 20 normal and 23 hybrid cultivars) under a high (75.69-77.55 mg kg{sup -1}) and a low (1.75-1.85 mg kg{sup -1}) cadmium (Cd) exposure. These pot experiments took place in the spring and summer of 2004. At the low level of Cd exposure, 30 out of the 43 tested cultivars were found to be Cd-PSCs. Grain Cd concentrations were highly correlated (p < 0.01) between the two experiments, suggesting that Cd accumulation in rice grain is genotype-dependent and that the selection of PSCs is possible, at least at a certain level of soil contamination. No Cd-PSCs were found under the high level of Cd exposure. Yield was enhanced in some cultivars and depressed in others in response to elevated soil Cd, indicating that farmers cannot rely on yield depression as an indicator of toxicity of the grains. It is therefore important and feasible to screen for PSCs and to establish PSC breeding programs to effectively and efficiently reduce the risk of human exposure to soil pollutants, such as Cd, through crop consumption.

  16. Genetic variation of 12 rice cultivars grown in Brunei Darussalam ...

    African Journals Online (AJOL)

    . Dendrogram showed three distinct clusters, where both Kuaci and Sp1 significantly diverted from the other ten rice cultivars. Bandul berminyak was the most tolerant to salinity. Quantum yield for B. berminyak were unaffected and it showed ...

  17. Variation of photosynthetic tolerance of rice cultivars (Oryza sativa L ...

    African Journals Online (AJOL)

    STORAGESEVER

    2010-03-01

    Mar 1, 2010 ... Photosynthetic characteristics of two cultivars tolerant (c.v. Taipei309 and Wuyujing3), two cultivars sensitive (c.v.CA212 and ... Key words: Rice, chilling tolerance, photosynthetic rate, photo-system, chilling stress, photooxidation, gluthione ...... response to low temperature: an overview.-Lyons JM. Low.

  18. Genetic diversity of important rice cultivars of Kashmir valley using ...

    African Journals Online (AJOL)

    27,RM-72, RM-107 and RM-154 were used to estimate the genetic diversity of eight indica rice cultivars significant for rice breeding programme in the temperate Kashmir Province of India. The SSR primers used, specific to five different ...

  19. Evaluation of Lodging-Related Morphological Characteristics in Improved Rice (Oryza sativa L. Cultivars

    Directory of Open Access Journals (Sweden)

    M. Broomand

    2016-02-01

    Full Text Available In order to evaluate the morphological characteristics and lodging-related traits and comparison of improved cultivars of rice plant resistance to lodging, a field experiment was carried out in randomized complete block design with three replications in 2012 at the Rice Research Institute of Iran Rasht(. Rice cultivars were Kadus, Khazar, Gohar, Dorfak, Sepidrood and Deylam and local rice cultivar (Hashemi; susceptible to lodging as a control. Plant height, stem length, internode length for the first, second, third and fourth internodes, diameter, thickness and cross- section area of third and fourth internodes, ratio of fresh weight and dry weight of third and fourth internodes to internode length, breaking resistance, bending moment and lodging resistance of third and fourth internodes and pushing resistance were examined. Khazar cultivar with greater thickness of third and fourth internodes (4.11 and 4.26 mm, diameter of third and fourth internodes (8.33 and 9.46 mm, cross- section area of the third and fourth internodes (40.96 and 52.32 mm2 and ratio of fresh weight of third and fourth internodes to internode length (301.48 and 444.15 mg.cm-1 and ratio of dry weight of third and fourth internodes to internode length (49.46 and 50.38 mg.cm-1, breaking resistance of the third and fourth internodes (14.43 and 20.87 N, respectively was found to be the most resistant cultivar. Khazar cultivar with a plant height of 121 cm was found to be the tallest among all studied cultivars. Considering the strong correlation found between thickness, stem diameter, cross- section area of third and fourth internodes and ratio of fresh weight and dry weight of third and fourth internodes to internode length with breaking resistance and pushing resistance, it seems that these traits could be considered as indirect indices in selection for higher resistance of rice cultivars to lodging.

  20. Recognition of Paddy, Brown Rice and White Rice Cultivars Based on Textural Features of Images and Artificial Neural Network

    Directory of Open Access Journals (Sweden)

    I Golpour

    2015-03-01

    Full Text Available Identification of rice cultivars is very important in modern agriculture. Texture properties could be used to identify of rice cultivars among of the various factors. The digital images processing can be used as a new approach to extract texture features. The objective of this research was to identify rice cultivars using of texture features with using image processing and back propagation artificial neural networks. To identify rice cultivars, five rice cultivars Fajr, Shiroodi, Neda, Tarom mahalli and Khazar were selected. Finally, 108 textural features were extracted from rice images using gray level co-occurrence matrix. Then cultivar identification was carried out using Back Propagation Artificial Neural Network. After evaluation of the network with one hidden layer using texture features, the highest classification accuracy for paddy cultivars, brown rice and white rice were obtained 92.2%, 97.8% and 98.9%, respectively. After evaluation of the network with two hidden layers, the average accuracy for classification of paddy cultivars was obtained to be 96.67%, for brown rice it was 97.78% and for white rice the classification accuracy was 98.88%. The highest mean classification accuracy acquired for paddy cultivars with 45 features was achieved to be 98.9%, for brown rice cultivars with 11 selected features it was 93.3% and it was 96.7% with 18 selected features for rice cultivars.

  1. Cropping system diversification for food production in Mindanao rubber plantations: a rice cultivar mixture and rice intercropped with mungbean

    National Research Council Canada - National Science Library

    Rosa Fe Hondrade; Edwin Hondrade; Lianqing Zheng; Francisco Elazegui; Jo-Anne Lynne Joy E Duque; Christopher C Mundt; Casiana M Vera Cruz; Karen A Garrett

    2017-01-01

    .... We evaluated the potential for planting rice, mungbean, rice cultivar mixtures, and rice intercropped with mungbean in young rubber plantations in experiments in the Arakan Valley of Mindanao in the Philippines...

  2. The Stem Borer Infestation on Rice Cultivars at Three Planting Times

    OpenAIRE

    Suharto, Hendarsih; N. Usyati

    2005-01-01

    Stem borer is the second important rice pest after rats in Indonesia. A field trial was conducted in Karawang, West Java in dry season of 2003 to study the effect of planting time on the stem borer infestation on seven rice cultivars. The rice cultivars tested were Fatmawati (new plant type cultivar), Gilirang (semi-new plant type cultivar), Maro and Intani 3 (hybrid rice cultivars), and IR72, Cilosari and IR62 (inbreed rice cultivars). The three planting times (PT) were: (1) the early PT, 14...

  3. THE STEM BORER INFESTATION ON RICE CULTIVARS AT THREE PLANTING TIMES

    OpenAIRE

    Hendarsih Suharto; N. Usyati

    2016-01-01

    Stem borer is the second important rice pest after rats in Indonesia. A field trial was conducted in Karawang, West Java in dry season of 2003 to study the effect of planting time on the stem borer infestation on seven rice cultivars. The rice cultivars tested were Fatmawati (new plant type cultivar), Gilirang (semi-new plant type cultivar), Maro and Intani 3 (hybrid rice cultivars), and IR72, Cilosari and IR62 (inbreed rice cultivars). The three planting times (PT) were: (1) the early PT, 14...

  4. Rice Yellow Mottle Virus stress responsive genes from susceptible and tolerant rice genotypes

    Directory of Open Access Journals (Sweden)

    Siré Christelle

    2008-03-01

    Full Text Available Abstract Background The effects of viral infection involve concomitant plant gene variations and cellular changes. A simple system is required to assess the complexity of host responses to viral infection. The genome of the Rice yellow mottle virus (RYMV is a single-stranded RNA with a simple organisation. It is the most well-known monocotyledon virus model. Several studies on its biology, structure and phylogeography have provided a suitable background for further genetic studies. 12 rice chromosome sequences are now available and provide strong support for genomic studies, particularly physical mapping and gene identification. Results The present data, obtained through the cDNA-AFLP technique, demonstrate differential responses to RYMV of two different rice cultivars, i.e. susceptible IR64 (Oryza sativa indica, and partially resistant Azucena (O. s. japonica. This RNA profiling provides a new original dataset that will enable us to gain greater insight into the RYMV/rice interaction and the specificity of the host response. Using the SIM4 subroutine, we took the intron/exon structure of the gene into account and mapped 281 RYMV stress responsive (RSR transcripts on 12 rice chromosomes corresponding to 234 RSR genes. We also mapped previously identified deregulated proteins and genes involved in partial resistance and thus constructed the first global physical map of the RYMV/rice interaction. RSR transcripts on rice chromosomes 4 and 10 were found to be not randomly distributed. Seven genes were identified in the susceptible and partially resistant cultivars, and transcripts were colocalized for these seven genes in both cultivars. During virus infection, many concomitant plant gene expression changes may be associated with host changes caused by the infection process, general stress or defence responses. We noted that some genes (e.g. ABC transporters were regulated throughout the kinetics of infection and differentiated susceptible and

  5. DNA tagging of blast resistant gene(s in three Brazilian rice cultivars

    Directory of Open Access Journals (Sweden)

    S.S. Sandhu

    2003-12-01

    Full Text Available Rice blast is the most important fungal disease of rice and is caused by Pyricularia oryzae Sacc. (Telomorph Magnoporthe grisea Barr.. Seven randomly amplified polymorphic DNA (RAPD markers OPA5, OPG17, OPG18, OPG19, OPF9, OPF17 and OPF19 showed very clear polymorphism in resistant cultivar lines which differed from susceptible lines. By comparing different susceptible lines, nine DNA amplifications of seven primers (OPA5(1000, OPA5(1200, OPG17(700, OPG18(850, OPG19(500, OPG19(600, OPF9(600, OPF17(1200 and OPF19(600 were identified as dominant markers for the blast resistant gene in resistant cultivar lines. These loci facilitate the indirect scoring of blast resistant and blast susceptible genotypes. The codomine RAPDs markers will facilitate marker-assisted selection of the blast resistant gene in two blast resistant genotypes of rice (Labelle and Line 11 and will be useful in rice breeding programs.

  6. Germination potential index of Sindh rice cultivars on biochemical ...

    African Journals Online (AJOL)

    Time sequence analysis of germination and vigor of five rice cultivars were carried out by investigating the associated biochemical changes. The experiments were conducted with varying periods of incubation for germination and varietal differences were observed for different parameters. Alpha amylase activities were ...

  7. Genetic variation of 12 rice cultivars grown in Brunei Darussalam ...

    African Journals Online (AJOL)

    Dell

    2015-03-25

    Mar 25, 2015 ... Genetic variations of 12 different rice cultivars in Brunei Darussalam were studied using 15 different. SSR markers and their salinity tolerance mechanism was also assessed. Eight SSR markers, RM 151,. 187, 206, 226, 276, 310, 320 and 334, showed polymorphic alleles while the other seven were.

  8. Evaluation of the Performance of Upland Rice Cultivars as Affected ...

    African Journals Online (AJOL)

    A field experiment was conducted under rain-fed condition during the 2006 and 2007 planting seasons in Nara, Enugu (060 52'N and 070 15'E) in the Derived Savanna of Southeast agro-ecological zone of Nigeria, to evaluate the growth and yield performance of different upland rice cultivars under various fertilizer levels.

  9. Germination potential index of Sindh rice cultivars on biochemical ...

    African Journals Online (AJOL)

    use

    2011-12-14

    Dec 14, 2011 ... The Karachi Institute of Biotechnology and Genetic Engineering (KIBGE), University of Karachi, Karachi, Karachi-75270,. Pakistan. Accepted 20 January, 2011. Time sequence analysis of germination and vigor of five rice cultivars were carried out by investigating the associated biochemical changes.

  10. Kinetic parameters of silicon uptake by rice cultivars

    Directory of Open Access Journals (Sweden)

    Priscila Oliveira Martins

    2012-02-01

    Full Text Available Silicon is considered an important chemical element for rice, because it can improve tolerance to biotic and abiotic stress. However, in many situations no positive effect of silicon was observed, probably due to genetic factors. The objective of this research was to monitor Si uptake kinetics and identify responses of rice cultivars in terms of Si uptake capacity and use. The experiment was carried out in a greenhouse of the São Paulo State University (UNESP, Brazil. The experiment was arranged in a completely randomized, factorial design with three replications. that consisted of two rice cultivars and two Si levels. Kinetic parameters (Vmax, Km, and Cmin, root morphology variables, dry matter yield, Si accumulation and levels in shoots and roots, uptake efficiency, utilization efficiency, and root/shoot ratio were evaluated. Higher Si concentrations in the nutrient solution did not increase rice dry matter. The development of the low-affinity silicon uptake system of the rice cultivar 'Caiapó' was better than of 'Maravilha'.

  11. Response of different lines and cultivars of rice subjected to low temperatures under controlled conditions

    Directory of Open Access Journals (Sweden)

    Sandra H Díaz Solís

    2017-01-01

    Full Text Available Rice (Oryza sativa L. is the most important food crop in the world and primary source of food for more than a third of the population. The low temperatures are among the main abiotic stresses that affect the yield of this cereal. The objective of this work was to determinate the response of different lines and cultivars of rice in seedling state to low temperature stress under controlled conditions. 172 lines and cultivars were studied. It were subjected to 5 0C for 24 hours, when the plants were about three to four leaves. The evaluations were conducted by measured of chlorophyll fluorescence and visually. A wide range of response was obtained, which indicated a high allelic diversity for the low temperatures sensitivity in the studied germplasm. A group of 30 cultivars responded more favorably to the cold and the most prominent cultivars showed Fv/Fm values between 0.80 and 0.89. A significant relationship between visual evaluation and chlorophyll fluorescence was found. The correlation coefficient revealed a moderately strong relationship between both variables. Tolerant plant materials were more consistently identified. However, the dispersion between methods increased to more susceptible cultivars.   Keywords: cold tolerance, chlorophyll fluorescence, Oryza sativa, visual evaluation

  12. susceptibility of some kersting's groundnut landrace cultivars

    African Journals Online (AJOL)

    User

    Seed grains of five different landrace cultivars of Kersting's groundnut were used for the study in the Biology Laboratory of the University for. Development Studies, Nyankpala in the North- ern Region of Ghana, between January and. March, 2010. The landrace cultivars included local germplasm lines collected from farmers'.

  13. Leaf gas exchange and yield of three upland rice cultivars

    Directory of Open Access Journals (Sweden)

    Rita de Cássia Félix Alvarez

    2015-03-01

    Full Text Available Studies of physiological parameters associated with crop performance and growth in different groups of upland rice (Oryza sativa L. may support plant breeding programs. We evaluated the role of gas exchange rates and dry matter accumulation (DMA as traits responsible for yields in a traditional (cv. ‘Caiapó’, intermediate (cv. ‘Primavera’ and modern (cv. ‘Maravilha’ upland rice cultivars. Leaf gas exchange rates, DMA, leaf area index (LAI, harvest indexes (HI and yield components were measured on these genotypes in the field, under sprinkler irrigation. Panicles per m2 and DMA at flowering (FL and heading, as well as CO2 assimilation rates (A were similar across these cultivars. The highest yield was found in ‘Primavera’, which may be explained by (i a two-fold higher HI compared to the other cultivars, (ii greater rates of DMA during spikelet formation and grain-filling, as well as (iii a slow natural decrease of A in this cultivar, at the end of the season (between FL and maturation.

  14. reaction of rice cultivars to a virulent rice yellow mottle virus strain

    African Journals Online (AJOL)

    Prof. Adipala Ekwamu

    Nonetheless, emerging diseases such as the Rice Yellow Mottle Virus sobemovirus (RYMV) undermine dissemination of new ... cultivars de riz au virus virulent de la panachure jaune en Ouganda était déterminée. Quatre variétés NERICA de ..... Kouassi, N.K., N'Guessan, P., Albar, L., Fauquet,. C.M. and Brugidou, C. 2005.

  15. THE EFFECT OF RICE CULTIVARS ON METHANE EMISSION FROM IRRIGATED RICE FIELD

    Directory of Open Access Journals (Sweden)

    P. Setyanto

    2016-10-01

    Full Text Available Rice plants have been reported to affect methane (CH4 emission from rice fields. The objectives of this study were to determine the effect of rice cultivars on CH4 emission from flooded rice and to develop crop management strategies with low emitting rice cultivars while sustaining high yield. The four rice cultivars studied were Memberamo, Cisadane, IR64, and Way Apoburu. The CH4 emissions were determined in the wet season of 2001/2002 (November-February using an automated closed chamber technique in an irrigated field condition. Farmyard manure at the rate of 5 t ha-1 was given to the plots to ensure carbon was not limited. Root weight, root length, biomass, and number of tillers were determined at 17, 36, and 57 days after transplanting (DAT. The results showed that the mean CH4 emission was highest in the plot planted with Cisadane (94.8 kg CH4 ha-1, and the lowest with IR64 (37.7 kg CH4 ha-1. The plots treated with emberamo and Way Apoburu resulted an intermediate CH4 emission at the average of 61.1 and 58.9 kg CH4 ha-1, respectively. There was no significant difference in yield between the cultivars tested. The yield of Memberamo, Cisadane, IR64, and Way Apoburu were 5.882, 5.764, 5.873 and 6.065 t ha-1, respectively. Statistical analysis showed that there were no significant differences in the root weight and root length among cultivars. However, Cisadane gave the highest dry matter weight (222 g hill-1 at 57 DAT compared to the other cultivars (175-190 g hill-1. Plant tillers did not show significant differences between the cultivars. Regression analysis showed that CH4 flux was significantly related with root weight, root length, aboveground biomass, and number of plant tillers. This finding shows that the use of selected cultivars, such as IR64, can potentially lower CH4 emission without scarifying yield.

  16. Harvest season and head rice yield of upland rice cultivars submitted to parboiling

    Directory of Open Access Journals (Sweden)

    Diva Mendonça Garcia

    2012-11-01

    Full Text Available Normal 0 21 false false false PT-BR X-NONE X-NONE This work aimed to evaluate the effects of parboiling on the yield of upland rice cultivars harvested at different times. The cultivars were BRS Primavera and BRS Sertaneja, harvested at 30 and 47 days after flowering (DAF. For parboiling, samples were soaked in water bath at 65 °C in grain: water ratio of 1:1.6 in order to reach 25% and 30% moisture, and then were autoclaved for 10 minutes at 120 °C and 1.1 kg/cm2 of pressure. After drying up to 13% moisture in a greenhouse with forced air at 40 °C, samples were benefited, followed by separation using the trieur equipment and weighing to obtain the head rice yield. The results showed a higher yield for head rice harvested at 30 DAF than at 47 DAF (BRS Primavera 63.2 and 38.7%; BRS Sertaneja 68.5 and 55.7%, respectively. Parboiling increased the head rice yield, regardless of harvest season, but partly reflected the potential of the cultivar origin: BRS Primavera 70.06%, BRS Sertaneja 74.94%. It is concluded that the harvest season is one of the factors that most influence the quality of industrial rice and the effect of parboiling also depends on the potential of the material source.

  17. Genetic diversity of high performance cultivars of upland and irrigated Brazilian rice.

    Science.gov (United States)

    Coelho, G R C; Brondani, C; Hoffmann, L V; Valdisser, P A M R; Borba, T C O; Mendonça, J A; Rodrigues, L A; de Menezes, I P P

    2017-09-21

    The objective of this study was to analyze the diversity and discrimination of high-performance Brazilian rice cultivars using microsatellite markers. Twenty-nine rice cultivars belonging to EMBRAPA Arroz e Feijão germplasm bank in Brazil were genotyped by 24 SSR markers to establish their structure and genetic discrimination. It was demonstrated that the analyzed germplasm of rice presents an expressive and significant genetic diversity with low heterogeneity among the cultivars. All 29 cultivars were differentiated genetically, and were organized into two groups related to their upland and irrigated cultivation systems. These groups showed a high genetic differentiation, with greater diversity within the group that includes the cultivars for irrigated system. The genotyping data of these cultivars, with the morphological e phenotypical data, are valuable information to be used by rice breeding programs to develop new improved cultivars.

  18. THE STEM BORER INFESTATION ON RICE CULTIVARS AT THREE PLANTING TIMES

    Directory of Open Access Journals (Sweden)

    Hendarsih Suharto

    2016-10-01

    Full Text Available Stem borer is the second important rice pest after rats in Indonesia. A field trial was conducted in Karawang, West Java in dry season of 2003 to study the effect of planting time on the stem borer infestation on seven rice cultivars. The rice cultivars tested were Fatmawati (new plant type cultivar, Gilirang (semi-new plant type cultivar, Maro and Intani 3 (hybrid rice cultivars, and IR72, Cilosari and IR62 (inbreed rice cultivars. The three planting times (PT were: (1 the early PT, 14 days before farmer’s PT, (2 the common PT, simultaneously with farmer’s PT, and (3 the late PT, 14 days after farmer’s PT. The trial was arranged in a split plot design with four replications. Planting time is the main plot and rice cultivar is the subplot. Fourteen-day old rice seedlings were transplanted at 25 cm x 25 cm planting distance in a 5 m x 6 m plot size. Species and fluctuation of rice stem borer were determined by using water traps containing four synthetic sex pheromone lures of rice stem borer species as attractant. Results showed that the dominant species of stem borer was yellow stem borer (Scirpophaga incertulas Wlk.. Degree of stem borer infestation depended upon the planting time. Stem borer infestation at the first planting time was higher (average 37.90% compared to those found at the second and third planting time, i.e. 0.65% and 0.54%, respectively. Rice yields of Fatmawati, Gilirang, Maro, Intani-3, and Cilosari cultivars correlated with the degree of stem borer infestation, but did not correlate with planting time. Cilosari cultivar showed the most tolerant under heavily stem borer infestation. The present study implies that adjustment of planting time is the most feasible effort to reduce stem borer infestation because none of the seven rice cultivars tested were able to minimize damage under heavily infestation of yellow stem borer.

  19. Effect of rice cultivars on root-associated methanotrophic communities

    Science.gov (United States)

    Lüke, C.; Frenzel, P.

    2009-04-01

    Rice agriculture represents a major source of the greenhouse gas methane. However, a large amount of methane is oxidized by methanotrophic bacteria before being released to the atmosphere. Methanotrophs are characterized by their unique ability to use methane as sole source for carbon and energy. They are located at oxic-anoxic interfaces where methane and oxygen are present, such as the rhizosphere. Although they have been studied extensively in the past, only little is known about natural or anthropogenic factors influencing their large diversity. In this study, we investigated the effect of 20 different rice cultivars on methanotrophic communities associated with the roots of rice plants. The pmoA gene encoding a subunit of the particulate methane monooxygenase (catalyzing the first step of methane oxidation) was used as a functional and phylogenetic marker and analyzed using two different fingerprinting methods. The well established terminal restriction fragment length polymorphism (T-RFLP) analysis was compared to results obtained using a diagnostic pmoA microarray. Both methods indicated that type Ib (Methylococcus/Methylocaldum) and type II (Methylosinus/Methylocystis) were the predominat methanotrophs located on rice roots. Interestingly, analysis of pmoA transcripts suggested Methylobacter/Methylomonas (type Ia) to present the actively methane oxidizing population in this environment.

  20. Evaluation of susceptibility of some elite cowpea cultivars to attack ...

    African Journals Online (AJOL)

    Fifteen elite cowpea cultivars were evaluated for their susceptibility to attack and damage by the most destructive storage pest, Callosobruchus maculatus (F.), based on the number of eggs laid, total developmental time, percentage adult emergence, seed weight loss, and growth index. Significantly, more eggs were laid on ...

  1. Susceptibility of Algerian pepper cultivars (Capsicum annuum L) to ...

    African Journals Online (AJOL)

    Utilisateur

    2015-11-04

    Nov 4, 2015 ... Susceptibility of Algerian pepper cultivars (Capsicum annuum L) to Phytophthora capsici strains from different geographic areas. Benabdelkader Messaouda, Guechi Abdelhadi and Mézaache-Aichour Samia*. Laboratory of Applied Microbiology (phytopathology team), Department of Microbiology, Faculty ...

  2. SCS118 Marques – New rice cultivar obtained through induced mutation

    Directory of Open Access Journals (Sweden)

    Moacir Antonio Schiocchet

    2014-03-01

    Full Text Available The new rice cultivar, SCS118 Marques, was obtained through gamma irradiation of SCSBRS Tio Taka cultivar. SCS118 Marques presents modern architecture, lodging resistance, late maturity cycle, moderate resistance to blast, high yield potential, long grains and very high cooking quality. Industrial tests performed with SCS118 Marques showed that grains are suitable for parboiling and white rice, and it is recommended to all rice-producing regions of Santa Catarina

  3. Tagging microsatellite marker to a blast resistance gene in the irrigated rice cultivar Cica-8

    Directory of Open Access Journals (Sweden)

    Thiago Martins Pinheiro

    2012-09-01

    Full Text Available The rice cultivar Cica-8 exhibit differential reaction to several pathotypes of Magnaporthe oryzae. The objective of the present investigation was to determine the number of alleles involved in the expression of resistance to leaf blast and identify microsatellite markers linked to these alleles. A cross between cultivar Metica-1 and Cica-8 susceptible and resistant, respectively, to pathotype IB-1 (Py1049 was made to obtain F1, F2, BC1:1 and BC1:2 progenies. Greenhouse tests for leaf blast reaction showed that resistance is controlled by a monogenic dominant gene. For testing microsatellite markers, DNA of both resistant and susceptible parents and F1 and F2 populations was extracted. As expected for single dominant gene the F2 populations segregated at a ratio of 3:1. Of the 11 microsatellite markers tested, one marker RM 7102 was found to be closely linked to the resistant allele at a distance of 2.7 cM, in the cultivar Cica-8 to pathotype IB-1.

  4. Difference in oxidative stress tolerance between rice cultivars estimated with chlorophyll fluorescence analysis.

    Science.gov (United States)

    Kasajima, Ichiro

    2017-04-26

    Oxidative stress is considered to be involved in growth retardation of plants when they are exposed to a variety of biotic and abiotic stresses. Despite its potential importance in improving crop production, comparative studies on oxidative stress tolerance between rice (Oryza sativa L.) cultivars are limited. This work describes the difference in term of oxidative stress tolerance between 72 rice cultivars. 72 rice cultivars grown under naturally lit greenhouse were used in this study. Excised leaf discs were subjected to a low concentration of methyl viologen (paraquat), a chemical reagent known to generate reactive oxygen species in chloroplast. Chlorophyll fluorescence analysis using a two-dimensional fluorescence meter, ion leakage analysis as well as the measurement of chlorophyll contents were used to evaluate the oxidative stress tolerance of leaf discs. Furthermore, fluorescence intensities were finely analyzed based on new fluorescence theories that we have optimized. Treatment of leaf discs with methyl viologen caused differential decrease of maximum quantum yield of photosystem II (Fv/Fm) between cultivars. Decrease of Fv/Fm was also closely correlated with increase of ion leakage and decrease of chlorophyll a/b ratio. Fv/Fm was factorized into photochemical and non-photochemical parameters to classify rice cultivars into sensitive and tolerant ones. Among the 72 compared rice cultivars, the traditional cultivar Co13 was identified as the most tolerant to oxidative stress. Koshihikari, a dominant modern Japonica cultivar in Japan as well as IR58, one of the modern Indica breeding lines exhibited a strong tolerance to oxidative stress. Close correlation between Fv/Fm and chlorophyll a/b ratio provides a simple method to estimate oxidative stress tolerance, without measurement of chlorophyll fluorescence with special equipment. The fact that modern cultivars, especially major cultivars possessed tolerance to oxidative stress suggests that oxidative stress

  5. Cropping system diversification for food production in Mindanao rubber plantations: a rice cultivar mixture and rice intercropped with mungbean.

    Science.gov (United States)

    Hondrade, Rosa Fe; Hondrade, Edwin; Zheng, Lianqing; Elazegui, Francisco; Duque, Jo-Anne Lynne Joy E; Mundt, Christopher C; Vera Cruz, Casiana M; Garrett, Karen A

    2017-01-01

    Including food production in non-food systems, such as rubber plantations and biofuel or bioenergy crops, may contribute to household food security. We evaluated the potential for planting rice, mungbean, rice cultivar mixtures, and rice intercropped with mungbean in young rubber plantations in experiments in the Arakan Valley of Mindanao in the Philippines. Rice mixtures consisted of two- or three-row strips of cultivar Dinorado, a cultivar with higher value but lower yield, and high-yielding cultivar UPL Ri-5. Rice and mungbean intercropping treatments consisted of different combinations of two- or three-row strips of rice and mungbean. We used generalized linear mixed models to evaluate the yield of each crop alone and in the mixture or intercropping treatments. We also evaluated a land equivalent ratio for yield, along with weed biomass (where Ageratum conyzoides was particularly abundant), the severity of disease caused by Magnaporthe oryzae and Cochliobolus miyabeanus, and rice bug (Leptocorisa acuta) abundance. We analyzed the yield ranking of each cropping system across site-year combinations to determine mean relative performance and yield stability. When weighted by their relative economic value, UPL Ri-5 had the highest mean performance, but with decreasing performance in low-yielding environments. A rice and mungbean intercropping system had the second highest performance, tied with high-value Dinorado but without decreasing relative performance in low-yielding environments. Rice and mungbean intercropped with rubber have been adopted by farmers in the Arakan Valley.

  6. Cropping system diversification for food production in Mindanao rubber plantations: a rice cultivar mixture and rice intercropped with mungbean

    Directory of Open Access Journals (Sweden)

    Rosa Fe Hondrade

    2017-02-01

    Full Text Available Including food production in non-food systems, such as rubber plantations and biofuel or bioenergy crops, may contribute to household food security. We evaluated the potential for planting rice, mungbean, rice cultivar mixtures, and rice intercropped with mungbean in young rubber plantations in experiments in the Arakan Valley of Mindanao in the Philippines. Rice mixtures consisted of two- or three-row strips of cultivar Dinorado, a cultivar with higher value but lower yield, and high-yielding cultivar UPL Ri-5. Rice and mungbean intercropping treatments consisted of different combinations of two- or three-row strips of rice and mungbean. We used generalized linear mixed models to evaluate the yield of each crop alone and in the mixture or intercropping treatments. We also evaluated a land equivalent ratio for yield, along with weed biomass (where Ageratum conyzoides was particularly abundant, the severity of disease caused by Magnaporthe oryzae and Cochliobolus miyabeanus, and rice bug (Leptocorisa acuta abundance. We analyzed the yield ranking of each cropping system across site-year combinations to determine mean relative performance and yield stability. When weighted by their relative economic value, UPL Ri-5 had the highest mean performance, but with decreasing performance in low-yielding environments. A rice and mungbean intercropping system had the second highest performance, tied with high-value Dinorado but without decreasing relative performance in low-yielding environments. Rice and mungbean intercropped with rubber have been adopted by farmers in the Arakan Valley.

  7. Resistência de cultivares de arroz a Rhizoctonia solani e Rhizoctonia oryzae Resistance of rice cultivars to Rhizoctonia solani and Rhizoctonia oryzae

    Directory of Open Access Journals (Sweden)

    Anne Sitarama Prabhu

    2002-05-01

    Full Text Available Isolados de Rhizoctonia solani e Rhizoctonia oryzae, agentes causais da queima-da-bainha e mancha-da-bainha, respectivamente, foram coletados em lavouras de arroz irrigado no Estado do Tocantins. O objetivo deste trabalho foi avaliar a resistência de 12 cultivares de arroz a essas doenças, sob condições artificiais de inoculação, em casa de vegetação. Não houve correlação entre resistência das cultivares a R. oryzae e R. solani quanto ao comprimento da lesão na bainha infectada pelo método de palito de dentes. A relação entre tamanho da lesão na bainha e folha foi linear e significativamente negativa (r = -0,66, PIsolates of Rhizoctonia solani and Rhizoctonia oryzae, the causal agents of sheath blight and sheath rot diseases, respectively, were collected from irrigated rice fields in the State of Tocantins, Brazil. The main objective of the investigation was to assess the resistance of 12 genotypes to these diseases, under artificial inoculation tests in greenhouse condition. There was no correlation between the resistance of cultivars to R. oryzae and R. solani for lesion extension on sheath infection obtained by the toothpick method. The relationship between lesion size on sheath and leaf was linear and significantly negative (r = -0.66, P<=0.05, thereby indicating that there is no relationship between resistance of sheath and leaf to infection by R. solani in rice cultivars. Among the early maturing genotypes Labelle was highly susceptible in all methods of inoculation. The area under disease progress curve based on lesion height on the culm and the inoculation method with rice husk and grain were found more adequate for determining the differences in the degree of resistance among cultivars. Leaves exhibited resistance to infection by R. oryzae in inoculation tests with mycelial discs.

  8. Arsenic accumulation and phosphorus status in two rice (Oryza sativa L.) cultivars surveyed from fields in South China

    Energy Technology Data Exchange (ETDEWEB)

    Lu Ying [College of Natural Resources and Environment, South China Agricultural University, Guangzhou 510642 (China); School of Biological Science, University of Aberdeen, Aberdeen AB24 3UU (United Kingdom); Dong, Fei [College of Natural Resources and Environment, South China Agricultural University, Guangzhou 510642 (China); Deacon, Claire [School of Biological Science, University of Aberdeen, Aberdeen AB24 3UU (United Kingdom); Chen Huojun [College of Natural Resources and Environment, South China Agricultural University, Guangzhou 510642 (China); Raab, Andrea [School of Biological Science, University of Aberdeen, Aberdeen AB24 3UU (United Kingdom); Department of Chemistry, University of Aberdeen, Aberdeen AB24 3UE (United Kingdom); Meharg, Andrew A., E-mail: a.meharg@abdn.ac.u [School of Biological Science, University of Aberdeen, Aberdeen AB24 3UU (United Kingdom)

    2010-05-15

    The consumption of paddy rice (Oryza sativa L.) is a major inorganic arsenic exposure pathway in S.E. Asia. A multi-location survey was undertaken in Guangdong Province, South China to assess arsenic accumulation and speciation in 2 rice cultivars, one an Indica and the other a hybrid Indica. The results showed that arsenic concentrations in rice tissue increased in the order grain < husk < straw < root. Rice grain arsenic content of 2 rice cultivars was significant different and correlated with phosphorus concentration and molar ratio of P/As in shoot, being higher for the Indica cultivar than for the hybrid Indica, which suggests altering shoot phosphorus status as a promising route for breeding rice cultivars with reduced grain arsenic. Speciation of grain arsenic, performed using HPLC-ICP-MS, identified inorganic arsenic as the dominant arsenic species present in the rice grain. - Altering rice shoot phosphorus status is a promising route for breeding rice cultivars with reduced grain arsenic.

  9. Tillering and yield formation of a temperate Japonica rice cultivar in a Mediterranean rice agrosystem

    Energy Technology Data Exchange (ETDEWEB)

    Martinez-Eixarch, M.; Català, M.M.; Tomàs, N.; Pla, E; Zhu, D.

    2015-07-01

    Rice tillering is a crucial stage for yield formation. Deep understanding of the relationship between tillering dynamics and yield formation in a particular agrosystem is crucial to boost rice productivity. Research on rice tillering is mainly focused on tropical agrosystems whereas less is done in the Mediterranean, with direct water-seeding and Japonica cultivars. This study aims at characterizing tillering dynamics and identifying the main explanatory tillering traits of yield in a Mediterranean rice agrosystem, Ebro Delta (Northern Spain). A temperate Japonica cultivar grown in Spain, Gleva, was utilized. Plants and tillers were tagged to assess emergence and fertility ratios and grain yield; while changes in tillering number over time, yield and yield components for unit area were measured. Plant and tillering dynamics in the Ebro Delta rice fields can be accurately predicted through equations herein provided, which are based either on thermal time or leaf development. Plants grown under regional standard agricultural practices produced up to eight primary tillers of which two or three become productive. Maximum tiller number was the main explanatory variable of yield while high-yielding tillers within a plant are located on nodes with the highest emergence ratios and, after the main stem, they are the major contributors to yield. The decisive role of tiller development on yield along with the predictability of tiller dynamics raises options to optimize grain yield through tillering modulation. In this sense, results from this study suggests the promotion of early tillering followed by inhibition of late tillering as a strategy of tillering regulation. (Author)

  10. The contrasting responses of soil microorganisms in two rice cultivars to elevated ground-level ozone.

    Science.gov (United States)

    Feng, Youzhi; Yu, Yongjie; Tang, Haoye; Zu, Qianhui; Zhu, Jianguo; Lin, Xiangui

    2015-02-01

    Although elevated ground-level O₃ has a species-specific impact on plant growth, the differences in soil biota responses to O₃ pollution among rice cultivars are rarely reported. Using O₃ Free-Air Concentration Enrichment, the responses of the rhizospheric bacterial communities in the O₃-tolerant (YD6) and the O₃-sensitive (IIY084) rice cultivars to O₃ pollution and their differences were assessed by pyrosequencing at rice tillering and anthesis stages. Elevated ground-level O₃ negatively influenced the bacterial community in cultivar YD6 at both rice growth stages by decreasing the bacterial phylogenetic diversities and response ratios. In contrast, in cultivar IIY084, the bacterial community responded positively at the rice tillering stage under O₃ pollution. However, several keystone bacterial guilds were consistently negatively affected by O₃ pollution in two rice cultivars. These findings indicate that continuously O₃ pollution would negatively influence rice agroecosystem and the crop cultivar is important in determining the soil biota responses to elevated O₃. Copyright © 2014 Elsevier Ltd. All rights reserved.

  11. Changes in mineral elements and starch quality of grains during the improvement of japonica rice cultivars.

    Science.gov (United States)

    Zhang, Hao; Yu, Chao; Hou, Danping; Liu, Hailang; Zhang, Huiting; Tao, Rongrong; Cai, Han; Gu, Junfei; Liu, Lijun; Zhang, Zujian; Wang, Zhiqin; Yang, Jianchang

    2018-01-01

    The improvement of rice cultivars plays an important role in yield increase. However, little is known about the changes in starch quality and mineral elements during the improvement of rice cultivars. This study was conducted to investigate the changes in starch quality and mineral elements in japonica rice cultivars. Twelve typical rice cultivars, applied in the production in Jiangsu province during the last 60 years, were grown in the paddy fields. These cultivars were classified into six types according to their application times, plant types and genotypes. The nitrogen (N), phosphorus (P) and, and potassium (K) were mainly distributed in endosperm, bran and bran, respectively. Secondary and micromineral nutrients were distributed throughout grains. With the improvement of cultivars, total N contents gradually decreased, while total P, K and magnesium contents increased in grains. Total copper and zinc contents in type 80'S in grains were highest. The improvement of cultivars enhanced palatability (better gelatinisation enthalpy and amylose content), taste (better protein content) and protein quality (better protein components and essential amino acids). Correlation analysis indicated the close relationship between mineral elements and starch quality. The mineral elements and starch quality of grains during the improvement of japonica rice cultivars are improved. © 2017 Society of Chemical Industry. © 2017 Society of Chemical Industry.

  12. Interferência do arroz vermelho no rendimento de engenho de cultivares de arroz irrigado Red rice interference on milling yield of irrigated rice cultivars

    Directory of Open Access Journals (Sweden)

    Valmir Gaedke Menezes

    1997-03-01

    Full Text Available O arroz vermelho é considerado a planta daninha que mais danos causa a orizicultura gaúcha. A presença dos grãos desta invasora junto aos grãos das cultivares de arroz contribui para a diminuição da qualidade física do arroz, na medida em que diminui o rendimento de engenho, aumenta o número de grãos rojados, com centro branco e gessados. Este trabalho foi desenvolvido com o objetivo de determinar o efeito de diferentes quantidades de arroz vermelho na amostra de arroz sobre a renda do beneficio e sobre o rendimento de grãos inteiros e de quebrados em três cultivares de arroz irrigado (BR-IRGA 410, IRGA 416 e IRGA 417 com classe de grão longo fino. Os tratamentos constaram de diferentes proporções na amostra (0, 5, 10, 15, 20, 25, 50, 75 e 100% de grãos de arroz vermelho. Os resultados evidenciaram que, para todas as cultivares, à medida que aumentou a presença de grãos de arroz vermelho na amostra no processo de beneficiamento, o rendimento de grãos inteiros e a renda do beneficio diminuíram linearmente, enquanto o rendimento de grãos quebrados aumentou linearmente.Red rice is considered the weed that cause the most significam damage to rice fields in the State of Rio Grande does Soul, Brazil. The presence of red rice grains associated with the grains of the commercial rice cultivars contribute to reduce the physical quality of the rice because reduce the milling yield and increase the number of grains chalky and with white pearly. This experiment was developed with the purpose of determining the effect of different quantities of retrace in the sample on the milling yield of three cultivars of irrigated rice with grains fine long class. The treatments consisted of different proportions in the samples (0, 5, 10, 15, 20, 25, 50, 75 and 100% of grains red rice and grains of the rice cultivars BR-JRGA 410, IRGA 416 and IRGA 417. As the quantity of grains of red rice increased in the sample in the milling process, the whole

  13. Effect of nitrogen rate and the environment on physicochemical properties of selected high amylose rice cultivars

    Science.gov (United States)

    Genetic marker haplotypes for the Waxy and alk genes are associated with amylose content and gelatinization temperature, respectively, and are used by breeders to develop rice cultivars that have physicochemical properties desired by the parboiling and canning industries. Cultivars that provide cons...

  14. Evaluation of the occluded carbon within husk phytoliths of 35 rice cultivars

    Science.gov (United States)

    Sun, Xing; Liu, Qin; Gu, Jie; Chen, Xiang; Zhu, Keya

    2016-12-01

    Rice is a well-known silicon accumulator. During its periods of growth, a great number of phytoliths are formed by taking up silica via the plant roots. Concurrently, carbon in those phytoliths is sequestrated by a mechanism of long-term biogeochemical processes within the plant. Phytolith occluded C (PhytOC) is very stable and can be retained in soil for longer than a millennium. In this study, we evaluated the carbon biosequestration within the phytoliths produced in rice seed husks of 35 rice cultivars, with the goal of finding rice cultivars with relatively higher phytolith carbon sequestration efficiencies. The results showed that the phytolith contents ranged from 71.6 mg•g‒1 to 150.1 mg•g‒1, and the PhytOC contents ranged from 6.4 mg•g‒1 to 38.4 mg•g‒1, suggesting that there was no direct correlation between the PhytOC content and the content of rice seed husk phytoliths ( R = 0.092, p>0.05). Of all rice cultivars, six showed a higher carbon sequestration efficiency in phytolith seed husks. Additionally, the carbon biosequestration within the rice seed husk phytoliths was approximately 0.45‒3.46 kg-e-CO2•ha‒1•yr‒1. These rates indicate that rice cultivars are a potential source of carbon biosequestration which could contribute to the global carbon cycle and climate change.

  15. THE STEM BORER INFESTATION ON RICE CULTIVARS AT THREE PLANTING TIMES

    National Research Council Canada - National Science Library

    Hendarsih Suharto; N. Usyati

    2016-01-01

    Stem borer is the second important rice pest after rats in Indonesia. A field trial was conducted in Karawang, West Java in dry season of 2003 to study the effect of planting time on the stem borer infestation on seven rice cultivars...

  16. Identifying the Most Appropriate Cultivar for Sustainability of Rice Production System Using Analytic Hierarchy Process (AHP

    Directory of Open Access Journals (Sweden)

    H. Moumenihelali

    2015-09-01

    Full Text Available In general, the ultimate goal of a sustainable system is to maximize the benefits of existing resources and to minimize the threats to the environment that occur due to the present conventional agricultural activities. Meanwhile, seed, as a rice cultivar in the present study, is presented as an important factor in sustainability. Therefore, identifying the most suitable cultivar of rice for sustaining the rice cultivation system is considered to be the main goal of the research. The population of the present study involves all specialists who have enough knowledge on components of sustainability and rice cultivars. To this end, 16 people were identified and studied through non-probability sampling method (purposeful and snowball. Face and content validity was used to determine the validity of the questionnaire. In addition, to assess the reliability, inconsistency ratio was used. Analytical Hierarchy Process (AHP technique was used in order to achieve the main objective, which is to identify the most suitable varieties for sustainable rice cultivation system. Expert Choice 2000 software was applied to calculate the data.The prerequisite of applying AHP technique is to consider the criteria (sustainability of rice cultivation system which include: economical, ecological, technical, social, and policy sustainability and their sub-criteria in the one hand, and decision alternatives (rice cultivars including: Hashemi, Tarom, Neda, Fajr, Khazar and Shirudi in the other hand. The results of prioritizing the criteria of rice cultivation stability showed that the economical (32%, ecological (23.9% and technical (21.1% stability are more important than the stability of social (14.8% and policy (8.3% aspects. Likewise, research findings showed that the cultivars of Hashemi (20.6% and Tarom (20.1% with a slight difference against each other are the most proper cultivars, respectively, in the sustainability of rice cultivation system.

  17. Use of SSR markers to discern reciprocal outcrossing rates between weedy red rice types and rice cultivars having different degrees of flowering synchronization

    Science.gov (United States)

    A broad range of flowering synchronization between red rice and rice was established by planting rice cultivars that flowered earlier, similar to, or later than red rice. Five SSR markers were used to identify hybrids. Outcrossing rates differed greatly depending on the degree of synchronization a...

  18. Genetic Diversity Analysis of Iranian Improved Rice Cultivars through RAPD Markers

    Directory of Open Access Journals (Sweden)

    Ghaffar KIANI

    2011-08-01

    Full Text Available The aim of this study was to evaluate the genetic diversity of Iranian improved rice varieties. Sixteen rice varieties of particular interest to breeding programs were evaluated by means of random amplified polymorphic DNA (RAPD technique. The number of amplification products generated by each primer varied from 4 (OPB-04 to 11 (OPD-11 with an average of 8.2 bands per primer. Out of 49 bands, 33 (67.35% were found to be polymorphic for one or more cultivars ranging from 4 to 9 fragments per primer. The size of amplified fragments ranged between 350 to 1800 bp. Pair-wise Nei and Li�s (1979 similarity estimated the range of 0.59 to 0.98 between rice cultivars. Results illustrate the potential of RAPD markers to distinguish improved cultivars at DNA level. The information will facilitate selection of genotypes to serve as parents for effective rice breeding programs in Iran.

  19. Oxidative damage and photosynthetic impairment in tropical rice cultivars upon exposure to excess iron

    Directory of Open Access Journals (Sweden)

    Samuel de Souza Pinto

    2016-06-01

    Full Text Available ABSTRACT Iron plays a pivotal role in the redox reactions of photosynthesis and metabolic processes such as chlorophyll synthesis. Iron availability in waterlogged soils can reach toxic levels and promote oxidative stress. Fe toxicity is the most concerning of stresses for rice in many lowland environments around the world and may cause severe impairments in rice photosynthesis. This study aimed to investigate the extension of oxidative stress after excess Fe exposure and its effects on the photosynthesis of rice cultivars with differential sensitivity. Three Brazilian rice cultivars (EPAGRI 107, BRSMG SELETA and BR IRGA 409 were grown in Hoagland nutrient solution (pH 4.0 with two Fe-EDTA doses corresponding to excess Fe (7 mM and control (0.009 mM treatments. After just three days of excess Fe exposure, there was a significant increase in iron concentration in the shoots. The BR IRGA 409 cultivar exhibited higher Fe accumulation in its shoots, and the EPAGRI 107 cultivar recorded the lowest values, which were below the critical toxicity level, as a resistance strategy. Impairment in light energy partitioning and oxidative damage became evident before changes in stomatal resistance, chlorophyll content, maximal PSII quantum yield or visual symptoms for the most sensitive cultivar (BR IRGA 409. The photosynthesis limitations, in addition to the impairment of excess energy dissipation in rice from iron toxicity, are the results of oxidative damage.

  20. Performance of super hybrid rice cultivars grown under no-tillage and direct seeding

    Directory of Open Access Journals (Sweden)

    Min Huang

    2012-04-01

    Full Text Available Good progress has been made in the super hybrid rice (Oryza sativa L. breeding in China. However, rice yield not only depends on the genetic characteristics but also on the agronomic practices. No-tillage and direct seeding (NTDS is a simplified cultivation technology that greatly simplifies both land preparation and crop establishment. Aiming to determine the grain yield performance of super hybrid rice under NTDS and to identify critical factors that determine grain yield, field experiments were conducted in Nanxian, Hunan Province, China in 2009 and 2010. Two super hybrid cultivars, Liangyoupeijiu and Y-liangyou 1, were grown under conventional tillage and transplanting (CTTP and NTDS. Grain yield, yield components, biomass production, crop growth rate and biomass accumulation during sowing to heading (HD and HD to maturity were measured for each cultivar. There was no difference in grain yield under NTDS and CTTP. However, grain yield differed with cultivar and year. Y-liangyou 1 produced 4 % higher grain yield than Liangyoupeijiu in 2009, whereas in 2010 both cultivars yielded similarly. Grain yields of both cultivars were higher in 2009 than in 2010. Higher grain yield of Y-liangyou 1 in 2009 was associated with higher spikelet filling (spikelet filling percentage and grain weight, which resulted from higher biomass production. Crop growth rate after HD was critical for biomass production by the super hybrid rice. We suggest that increasing the crop growth rate after HD is an effective approach to increase grain yield of super hybrid rice under NTDS.

  1. Accumulation and Transfer of Cadmium, by Indica Rice Cultivars Fujian Province of China

    Science.gov (United States)

    James, B.; Wang, G.

    2016-12-01

    This study was designed to evaluate the accumulating ability of cadmium (Cd) by different Indica rice varieties and to understand the differences in transfer factor in the soil-to-rice grain. A total of 189 crop samples and 189 corresponding soil samples were collected for treatment and chemical analysis. Sixteen (16) Indica rice varieties were selected for this study. Our preliminary results showed that there exist significant differences (pindica rice cultivars).The TFstem-grain among the variety revealed that significant differences (pindica rice variety and cadmium decreases in the pattern: root>stem>leaf>grain in the four cultivars except Te -you 009 that showed similar cadmium content in root and stem. Among the hybrid cultivars Yi -you 673 accumulated the most Cadmium in root, stem, leaf and grain, while Te- you 009 accumulated the least Cadmium in root, whereas the conventional cultivar Jia-fu-zhan accumulated the lowest Cadmium in leaf and grain. Our findings also revealed that the Cadmium concentrations in rice grains were more significantly correlated with the Cadmium in stem, followed by leaf, which reveals that the transfer from stem and leaf to grain may be the determinant steps for Cadmium accumulation in the grains.

  2. Studies on the susceptibility of peas and field peas cultivars to Ascochyta pisi (Lib.

    Directory of Open Access Journals (Sweden)

    Helena Furgał-Węgrzycka

    2013-12-01

    Full Text Available The aim of the work was to find the plants resistant to Ascochyta pisi causing leaf and spot-pot of peas and field peas. Fourty five cultivars of peas and field peas and 6 breeding materials were tested in field in the period 1975-1978. Cultivars: Bartel, Birte, Borek, Cebeco, Finale and Paloma were to be less susceptible. In laboratory and greenhouse conditions peas and field peas cultivares were examined for susceptible to pathotypes 2 and 4 of Ascochyta pisi. The results obtained proved that cultivars: Borel, cebeco, Finale and Paloma were to be less susceptible to two pathotypes of Ascochyta pisi.

  3. Malaysian weedy rice shows its true stripes: wild Oryza and elite rice cultivars shape agricultural weed evolution in Southeast Asia.

    Science.gov (United States)

    Song, Beng-Kah; Chuah, Tse-Seng; Tam, Sheh May; Olsen, Kenneth M

    2014-10-01

    Weedy rice is a close relative of domesticated rice (Oryza sativa) that competes aggressively with the crop and limits rice productivity worldwide. Most genetic studies of weedy rice have focused on populations in regions where no reproductively compatible wild Oryza species occur (North America, Europe and northern Asia). Here, we examined the population genetics of weedy rice in Malaysia, where wild rice (O. rufipogon) can be found growing in close proximity to cultivated and weedy rice. Using 375 accessions and a combined analysis of 24 neutral SSR loci and two rice domestication genes (sh4, controlling seed shattering, and Bh4, controlling hull colour), we addressed the following questions: (i) What is the relationship of Malaysian weedy rice to domesticated and wild rice, and to weedy rice strains in the USA? (ii) To what extent does the presence of O. rufipogon influence the genetic and phenotypic diversity of Malaysian weeds? (iii) What do the distributions of sh4 and Bh4 alleles and associated phenotypes reveal about the origin and contemporary evolution of Malaysian weedy rice? Our results reveal the following: independent evolutionary origins for Malaysian weeds and US strains, despite their very close phenotypic resemblance; wild-to-weed gene flow in Malaysian weed populations, including apparent adaptive introgression of seed-shattering alleles; and a prominent role for modern Malaysian cultivars in the origin and recent proliferation of Malaysian weeds. These findings suggest that the genetic complexity and adaptability of weedy crop relatives can be profoundly influenced by proximity to reproductively compatible wild and domesticated populations. © 2014 John Wiley & Sons Ltd.

  4. Low uptake affinity cultivars with biochar to tackle Cd-tainted rice--A field study over four rice seasons in Hunan, China.

    Science.gov (United States)

    Chen, De; Guo, Hu; Li, Ruiyue; Li, Lianqing; Pan, Genxing; Chang, Andrew; Joseph, Stephen

    2016-01-15

    Biochar is becoming an environmentally friendly material for remediation of heavy metal contaminated soils and improving food safety. A field trial over four rice seasons was conducted to investigate the use of biochar and low Cd accumulating cultivars on Cd uptake in a heavy metal contaminated soil. Wheat straw derived biochar was applied at 0, 20 and 40 t ha(-1). Two rice cultivars with differing Cd accumulation abilities were selected in each season. The results showed that both biochar and low Cd affinity cultivars significantly reduced rice grain Cd accumulation. Biochar had no significant effect the first season but thereafter consistently reduced rice grain Cd by a maximum of 61, 86 and 57% over the next three seasons. Zn accumulation in the rice grains was not decreased by biochar application, although available soil Zn was sharply reduced (35-91%). Indica conventional rice cultivars had much lower Cd, but higher Zn and lower Cd/Zn ratios in the grain than indica hybrid cultivars. Biochar was more effective for mitigating grain Cd accumulation in low Cd affinity cultivars than in high affinity cultivars. Soil pH was sustainably increased (up to nearly 1 unit) while available Cd significantly decreased by a maximum of 85% after biochar addition. The translocation of Cd from rice roots to shoots was reduced from 20 to 80% by biochar. Low uptake affinity cultivars combined with biochar reduced late rice grain Cd concentration and Cd/Zn ratios by 69-80% and 72-80%, respectively. It indicated that the management of combining biochar and low Cd affinity cultivars should be an efficient way to remediate Cd contaminated rice paddies and reduce health risk associated with consuming rice from these soils. Copyright © 2015 Elsevier B.V. All rights reserved.

  5. Effects of ozone on growth, yield and leaf gas exchange rates of four Bangladeshi cultivars of rice (Oryza sativa L.)

    Energy Technology Data Exchange (ETDEWEB)

    Akhtar, Nahid [United Graduate School of Agricultural Science, Tokyo University of Agriculture and Technology, Fuchu, Tokyo 183-8509 (Japan); Yamaguchi, Masahiro; Inada, Hidetoshi; Hoshino, Daiki; Kondo, Taisuke [Institute of Agriculture, Tokyo University of Agriculture and Technology, Fuchu, Tokyo 183-8509 (Japan); Fukami, Motohiro [Faculty of Agriculture, Utsunomiya University, Utsunomiya, Tochigi 321-8505 (Japan); Funada, Ryo [Institute of Agriculture, Tokyo University of Agriculture and Technology, Fuchu, Tokyo 183-8509 (Japan); Izuta, Takeshi, E-mail: izuta@cc.tuat.ac.j [Institute of Agriculture, Tokyo University of Agriculture and Technology, Fuchu, Tokyo 183-8509 (Japan)

    2010-09-15

    To assess the effects of tropospheric O{sub 3} on rice cultivated in Bangladesh, four Bangladeshi cultivars (BR11, BR14, BR28 and BR29) of rice (Oryza sativa L.) were exposed daily to charcoal-filtered air or O{sub 3} at 60 and 100 nl l{sup -1} (10:00-17:00) from 1 July to 28 November 2008. The whole-plant dry mass and grain yield per plant of the four cultivars were significantly reduced by the exposure to O{sub 3}. The exposure to O{sub 3} significantly reduced net photosynthetic rate of the 12th and flag leaves of the four cultivars. The sensitivity to O{sub 3} of growth, yield and leaf gas exchange rates was not significantly different among the four cultivars. The present study suggests that the sensitivity to O{sub 3} of yield of the four Bangladeshi rice cultivars is greater than that of American rice cultivars and is similar to that of Japanese rice cultivars and that O{sub 3} may detrimentally affect rice production in Bangladesh. - Bangladeshi cultivars of rice are sensitive to O{sub 3} below 100 ppb.

  6. Physiological and biochemical mechanisms of seed priming-induced chilling tolerance in rice cultivars

    Directory of Open Access Journals (Sweden)

    Saddam eHussain

    2016-02-01

    Full Text Available Rice belongs to tropical and subtropical environments and is extremely sensitive to chilling stress particularly during emergence and early stages of seedling development. Seed priming can be a good approach to enhance rice germination and stand establishment under chilling stress. The present study examined the role of different seed priming techniques viz., hydropriming, osmopriming, redox priming, chemical priming, and hormonal priming, in enhancing the chilling tolerance in rice. The most effective reagents and their pre-optimized concentrations based on preliminary experiments were used in this study. Two different rice cultivars were sown under chilling stress (18˚C and normal temperatures (28˚C in separate growth chambers. A non-primed control treatment was also maintained for comparison. Chilling stress caused erratic and delayed germination, poor seedling growth, reduced starch metabolism and lower respiration rate, while higher lipid peroxidation and hydrogen peroxide accumulation in rice seedlings of both cultivars. Nevertheless, all the seed priming treatments effectively alleviated the negative effects of chilling stress. In addition, seed priming treatments triggered the activities of superoxide dismutase, peroxidase, and catalase, and enhanced the accumulations of glutathione and free proline in rice seedlings, which suggests that these measures help prevent the rice seedlings from chilling induced oxidative stress. Chemical priming with selenium and hormonal priming with salicylic acid remained more effective treatments for both rice cultivars under chilling stress than all other priming treatments. The better performance and greater tolerance of primed rice seedlings was associated with enhanced starch metabolism, high respiration rate, lower lipid peroxidation, and strong antioxidative defense system under chilling stress.

  7. Analysis of genetic variability in rice cultivars of Arunachal Pradesh ...

    African Journals Online (AJOL)

    The diversity parameters confirmed that Bordungsha F1, S5 and Baodhan Bordungsha (deep water rice) were most diverse and were distinctly different from the rests of the genotype and the dissimilarity coefficient ranged from 0.06 to 0.94. This study provides a clear picture of the genetic diversity of rice. Among the set of ...

  8. Physicochemical properties of starches from diverse rice cultivars varying in apparent amylose content and gelatinisation temperature combinations.

    Science.gov (United States)

    Kong, Xiangli; Zhu, Ping; Sui, Zhongquan; Bao, Jinsong

    2015-04-01

    The physicochemical properties of starches isolated from 14 rice cultivars produced in China were investigated. These rice starches showed a non-random combination of AAC and GT. Rice starches showed a typical A-type diffraction pattern with the degree of crystallinity ranging from 32.3% (a high AAC rice) to 45.5% (a waxy rice). AAC was significantly correlated with the pasting, thermal and textural properties. The positive correlations were found with PV, HPV, CPV, SB and HD (pphysicochemical properties of rice starch, the retrogradation property of rice starch was mainly determined by the degree of crystallinity and GT. Copyright © 2014 Elsevier Ltd. All rights reserved.

  9. Identification and fine mapping of two blast resistance genes in rice cultivar 93-11

    Directory of Open Access Journals (Sweden)

    Cailin Lei

    2013-10-01

    Full Text Available Rice blast, caused by Magnaporthe oryzae, is a major disease of rice almost worldwide. The Chinese indica cultivar 93-11 is resistant to numerous isolates of the blast fungus in China, and can be used as broad-spectrum resistance resource, particularly in japonica rice breeding programs. In this study, we identified and mapped two blast resistance genes, Pi60(t and Pi61(t, in cv. 93-11 using F2 and F3 populations derived from a cross between the susceptible cv. Lijiangxintuanheigu (LTH and resistant cv. 93-11 and inoculated with M. oryzae isolates from different geographic origins. Pi60(t was delimited to a 274 kb region on the short arm of chromosome 11, flanked by InDel markers K1-4 and E12 and cosegregated with InDel markers B1 and Y10. Pi61(t was mapped to a 200 kb region on the short arm (near the centromere of chromosome 12, flanked by InDel markers M2 and S29 and cosegregating with InDel marker M9. In the 274 kb region of Pi60(t, 93-11 contains six NBS-LRR genes including the two Pia/PiCO39 alleles (BGIOSGA034263 and BGIOSGA035032 which are quite close to the two Pia/PiCO39 alleles (SasRGA4 and SasRGA5 in Sasanishiki and CO39, with only nine amino acids differing in the protein sequences of BGIOSGA035032 and SasRGA5. In the 200 kb region of Pi61(t, 93-11 contains four NBS-LRR genes, all of which show high identities in protein sequence with their corresponding NBS-LRR alleles in susceptible cv. Nipponbare. Comparison of the response spectra and physical positions between the target genes and other R genes in the same chromosome regions indicated that Pi60(t could be Pia/PiCO39 or its allele, whereas Pi61(t appears to be different from Pita, Pita-2, Pi19(t, Pi39(t and Pi42(t in the same R gene cluster. DNA markers tightly linked to Pi60(t and Pi61(t will enable marker-assisted breeding and map-based cloning.

  10. Use of local rice cultivars as additional differentials to identify pathotypes of Pyricularia oryzae

    Directory of Open Access Journals (Sweden)

    Gisele Barata da Silva

    2011-01-01

    Full Text Available Eight additional rice cultivars as differentials were selected to identify pathotypes occurring in the Tocantins State. They were BRS Jaburu, BRS Taim, BRS Biguá, BR IRGA-417, Epagri 109, Javaé, Metica-1 and Supremo. These differentials were used in addition to the international set to determine the pathogenic diversity of 193 Pyricularia oryzae isolates collected during 1994-2002 from irrigated rice cultivars. They were conserved in Pyricularia culture collection of Embrapa Rice and Bean Research center. From 193 P. oryzae isolates 38 pathotypes were identified based on leaf blast reactions of international set and 29 pathotypes based on these additional differentials. The predominant pathotypes (TI-1, TG-2, TD-15 and TF-2 were represented by 53% of the tested isolates. The major international pathotypes (IB-45, IB-41, II-1 and ID-13 were represented by 43% of the isolates tested. The virulence pattern of 28 isolates belonging to the pathotype IB-45 was further differentiated into nine local pathotypes using additional set of differentials. The irrigated rice cultivars used as additional differentials serve as complementary set to identify pathotypes of interest for breeding blast resistant cultivars for Tocantins State.

  11. Rice root-associated bacteria: insights into community structures across 10 cultivars.

    Science.gov (United States)

    Hardoim, Pablo Rodrigo; Andreote, Fernando Dini; Reinhold-Hurek, Barbara; Sessitsch, Angela; van Overbeek, Leonard Simon; van Elsas, Jan Dirk

    2011-07-01

    In this study, the effects of plant genotype, soil type and nutrient use efficiency on the composition of different bacterial communities associated with rice roots were investigated. Thus, total bacteria, Alpha- and Betaproteobacteria, Pseudomonas and Actinobacteria were studied using PCR, followed by denaturing gradient gel electrophoresis (PCR-DGGE). Rice genotype determined, to a large extent, the composition of the different bacterial communities across cultivars. Several cultivars belonging to Oryza sativa ssp. indica tended to select similar bacterial communities, whereas those belonging to subspecies japonica and aromatica selected ones with divergent community structures. An effect of soil type was pronounced for the Actinobacteria communities, while a small effect of 'improved' and 'traditional' plants was noted for all communities analyzed. A few dominant bands in PCR-DGGE, affiliated with Rhizobium radiobacter, Dickeya zeae, Mycobacterium bolletii and with members of the Rhizobiales, Rhodospirillaceae and Paenibacillaceae, were spread across cultivars. In contrast, a majority of bands (e.g. affiliated with Enterobacter cloacae or Burkholderia kururiensis) was only present in particular cultivars or was erratically distributed among rice replicates. These findings suggested that both bacterial adaptation and plant genotype contribute to the shaping of the dynamic bacterial communities associated with roots of rice plants. © 2011 Federation of European Microbiological Societies. Published by Blackwell Publishing Ltd. All rights reserved.

  12. Rice root-associated bacteria – insights in community structures across ten cultivars

    Science.gov (United States)

    Hardoim, Pablo Rodrigo; Andreote, Fernando Dini; Reinhold-Hurek, Barbara; Sessitsch, Angela; van Overbeek, Leonard Simon; van Elsas, Jan Dirk

    2015-01-01

    In this study, the effect of plant genotype, soil type and nutrient use efficiency on the composition of different bacterial communities associated with rice roots were investigated. Thus, total bacteria, Alpha- and Beta-proteobacteria, Pseudomonas and Actinobacteria were studied using PCR followed by denaturing gradient gel electrophoresis (PCR-DGGE). Rice genotype determined to a large extent the composition of the different bacterial communities across cultivars. Several cultivars belonging to Oryza sativa subspecies indica tended to select similar bacterial communities, whereas those belonging to subspecies japonica and aromatica selected ones with divergent community structures. An effect of soil type was pronounced for the Actinobacteria communities, while a small effect of ‘improved’ and ‘traditional’ plants was noted for all communities analysed. A few dominant bands in PCR-DGGE, affiliated with Rhizobium radiobacter, Dickeya zeae, Mycobacterium bolletii and with members of the Rhizobiales, Rhodospirillaceae and Paenibacillaceae were spread across cultivars. In contrast, a majority of bands (e.g. affiliated with Enterobacter cloacae or Burkholderia kururiensis) was only present in particular cultivars or was erratically distributed amongst rice replicates. The data suggested that both bacterial adaptation and plant genotype contribute to the shaping of the dynamic bacterial communities associated with roots of rice plants. PMID:21426364

  13. Effect of H2O2 Pretreatment on Cd Tolerance of Different Rice Cultivars

    Directory of Open Access Journals (Sweden)

    Xiao-Juan BAI

    2011-03-01

    Full Text Available The effect of H2O2 pretreatment on Cd tolerance and translocation of rice seedlings were studied using two rice cultivars (N07-6 and N07-63 differing in Cd tolerance. The contents of malondialdehyde (MDA, reduced glutathione (GSH, non-protein thiols (NPT, phytochelatins (PCs and the activity of glutathione S-transferase (GST were compared between the two cultivars exposed to various treatments. The results showed that 50 μmol/L Cd exposure significantly inhibited rice growth, enhanced the production of GSH, NPT, PCs and MDA, and increased the activity of GST, and there were significant differences between the two cultivars. More Cd was transported into the shoot of N07-6. The H2O2 pretreatment alleviated Cd toxicity by further increasing GSH, NPT and PCs contents, as well as the GST activity in roots. The increase degrees of these parameters in N07-63 were higher than those in N07-6, suggesting that the tolerance of N07-63 was enhanced more significantly than N07-6. Hydrogen peroxide reduced Cd translocation to rice shoot but affected the Cd content in root differently. From the above results, it may be speculated that there were remarkable differences in the Cd detoxification and response to the H2O2 pretreatment between the two cultivars.

  14. Can simulation models help design rice cultivars that are more competitive against weeds?

    NARCIS (Netherlands)

    Bastiaans, L.; Kropff, M.J.; Kempuchetty, N.; Rajan, A.; Migo, T.R.

    1997-01-01

    Differences in competitive ability between rice cultivars IR8 and Mahsuri, grown in well-fertilised irrigated conditions, were analysed by means of a mechanistic simulation model (INTERCOM) for crop-weed interaction. The analysis revealed that the greater competitive ability of Mahsuri was due

  15. Low uptake affinity cultivars with biochar to tackle Cd-tainted rice — A field study over four rice seasons in Hunan, China

    Energy Technology Data Exchange (ETDEWEB)

    Chen, De; Guo, Hu; Li, Ruiyue [Institute of Resources, Ecosystem and Environment of Agriculture, and Center of Biochar and Green Agriculture, Nanjing Agricultural University, 1 Weigang, Nanjing 210095 (China); Li, Lianqing, E-mail: lqli@njau.edu.cn [Institute of Resources, Ecosystem and Environment of Agriculture, and Center of Biochar and Green Agriculture, Nanjing Agricultural University, 1 Weigang, Nanjing 210095 (China); Pan, Genxing [Institute of Resources, Ecosystem and Environment of Agriculture, and Center of Biochar and Green Agriculture, Nanjing Agricultural University, 1 Weigang, Nanjing 210095 (China); Chang, Andrew [Department of Environmental Sciences, University of California, Riverside, CA 92521 (United States); Joseph, Stephen [Institute of Resources, Ecosystem and Environment of Agriculture, and Center of Biochar and Green Agriculture, Nanjing Agricultural University, 1 Weigang, Nanjing 210095 (China); School of Materials Science and Engineering, University of New South Wales, Sydney, NSW 2052 (Australia)

    2016-01-15

    Biochar is becoming an environmentally friendly material for remediation of heavy metal contaminated soils and improving food safety. A field trial over four rice seasons was conducted to investigate the use of biochar and low Cd accumulating cultivars on Cd uptake in a heavy metal contaminated soil. Wheat straw derived biochar was applied at 0, 20 and 40 t ha{sup −1}. Two rice cultivars with differing Cd accumulation abilities were selected in each season. The results showed that both biochar and low Cd affinity cultivars significantly reduced rice grain Cd accumulation. Biochar had no significant effect the first season but thereafter consistently reduced rice grain Cd by a maximum of 61, 86 and 57% over the next three seasons. Zn accumulation in the rice grains was not decreased by biochar application, although available soil Zn was sharply reduced (35–91%). Indica conventional rice cultivars had much lower Cd, but higher Zn and lower Cd/Zn ratios in the grain than indica hybrid cultivars. Biochar was more effective for mitigating grain Cd accumulation in low Cd affinity cultivars than in high affinity cultivars. Soil pH was sustainably increased (up to nearly 1 unit) while available Cd significantly decreased by a maximum of 85% after biochar addition. The translocation of Cd from rice roots to shoots was reduced from 20 to 80% by biochar. Low uptake affinity cultivars combined with biochar reduced late rice grain Cd concentration and Cd/Zn ratios by 69–80% and 72–80%, respectively. It indicated that the management of combining biochar and low Cd affinity cultivars should be an efficient way to remediate Cd contaminated rice paddies and reduce health risk associated with consuming rice from these soils. - Highlights: • Biochar sustainably reduced soil Cd availability and Cd translocation in rice plant. • Indica conventional cultivars had lower Cd but higher Zn in grains than hybrid ones. • Biochar significantly reduced grain Cd and Cd/Zn ratio

  16. Recovery of nitrogen fertilizer by traditional and improved rice cultivars in the Bhutan Highlands

    DEFF Research Database (Denmark)

    Ghaley, Bhim Bahadur; Jensen, Henning Høgh; Christiansen, Jørgen Lindskrog

    2010-01-01

    The recovery of soil derived nitrogen (NDFS) and fertilizer N (NDFF) was investigated in highland rice (Oryza sativa L.) fields in Bhutan, characterized by high inputs of farmyard manure (FYM). The effect of 60 kg N ha-1 (60 N) applied in two splits to a traditional and an improved cultivar...... greater harvest index (HI). The mean percentage recovery of fertilizer N (REN) applied at 45 days after transplanting (DAT) was 34% compared to 22% at 7 DAT, resulting in 56% greater uptake of NDFF at 45 DAT. The overall REN for both the improved and the traditional cultivars were 25.7% and 30......% respectively, with no difference between cultivars, but REN decreased with increasing FYM inputs. Fertilizer N recommendations that allow for previous FYM inputs combined with applications timed to coincide with maximum crop demand (45 DAT), and the use of improved cultivars, could enhance N fertilizer...

  17. Dorsoventral asymmetry of photosynthesis and photoinhibition in flag leaves of two rice cultivars that differ in nitrogen response and leaf angle.

    Science.gov (United States)

    Kumagai, Etsushi; Hamaoka, Norimitsu; Araki, Takuya; Ueno, Osamu

    2014-08-01

    Rice is believed to show photosynthetic symmetry between adaxial and abaxial leaf sides. To verify this, we re-examined dorsoventral asymmetry in photosynthesis, chlorophyll fluorescence and anatomical traits in flag leaves of two Oryza sativa cultivars that differ in nitrogen (N) response and in leaf angle: 'Akenohoshi', a cultivar that can adapt to low-N (LN), with low leaf angle (more erect leaves), and 'Shirobeniya', a cultivar that is unable to adapt to LN, with higher leaf angle. Plants were grown under standard-N (SN) and LN conditions. LN leaves of both cultivars became more erect than SN, but LN Akenohoshi still had more erect ones than Shirobeniya. Contrary to results of previous studies, leaves of both cultivars showed an asymmetry in photosynthetic rate between adaxial and abaxial sides (higher on the adaxial side) under SN. SN leaves of both cultivars showed lower susceptibility to photoinhibition on the adaxial side than on the abaxial side. However, leaves of Akenohoshi showed less asymmetry in these traits under LN than under SN, whereas leaves of Shirobeniya had similar degrees of asymmetry in these traits under both SN and LN. Both cultivars also showed dorsoventral asymmetry in anatomical traits of mesophyll tissue regardless of N level, but the degree of asymmetry was lower in LN Akenohoshi. These data reveal that rice leaves exhibit dorsoventral asymmetry in photosynthetic and anatomical features, and that the degree of asymmetry varies with cultivar and N level. It is suggested that lower leaf angles (particularly in Akenohoshi) in the presence of LN represent a light acclimation to prevent photoinhibition. © 2013 Scandinavian Plant Physiology Society.

  18. Expression of drought tolerance genes in tropical upland rice cultivars (Oryza sativa).

    Science.gov (United States)

    Silveira, R D D; Abreu, F R M; Mamidi, S; McClean, P E; Vianello, R P; Lanna, A C; Carneiro, N P; Brondani, C

    2015-07-27

    Gene expression related to drought response in the leaf tissues of two Brazilian upland cultivars, the drought-tolerant Douradão and the drought-sensitive Primavera, was analyzed. RNA-seq identified 27,618 transcripts in the Douradão cultivar, with 24,090 (87.2%) homologous to the rice database, and 27,221 transcripts in the Primavera cultivar, with 23,663 (86.9%) homologous to the rice database. Gene-expression analysis between control and water-deficient treatments revealed 493 and 1154 differentially expressed genes in Douradão and Primavera cultivars, respectively. Genes exclusively expressed under drought were identified for Douradão, including two genes of particular interest coding for the protein peroxidase precursor, which is involved in three distinct metabolic pathways. Comparisons between the two drought-exposed cultivars revealed 2314 genes were differentially expressed (978 upregulated, 1336 downregulated in Douradão). Six genes distributed across 4 different transcription factor families (bHLH, MYB, NAC, and WRKY) were identified, all of which were upregulated in Douradão compared to Primavera during drought. Most of the genes identified in Douradão activate metabolic pathways responsible for production of secondary metabolites and genes coding for enzymatically active signaling receptors. Quantitative PCR validation showed that most gene expression was in agreement with computational prediction of these transcripts. The transcripts identified here will define molecular markers for identification of Cis-acting elements to search for allelic variants of these genes through analysis of polymorphic SNPs in GenBank accessions of upland rice, aiming to develop cultivars with the best combination of these alleles, resulting in materials with high yield potential in the event of drought during the reproductive phase.

  19. Tolerância de cultivares de arroz irrigado (Oryza sativa ao herbicida nicosulfuron e à mistura formulada de imazethapyr + imazapic Tolerance of rice (Oryza sativa cultivars to nicosulfuron and to the formulated mixture imazethapyr + imazapic

    Directory of Open Access Journals (Sweden)

    L.C. Fontona

    2007-12-01

    Full Text Available O objetivo deste estudo foi avaliar a tolerância de cultivares de arroz irrigado ao herbicida nicosulfuron e à mistura formulada de imazethapyr + imazapic. Para isso, foram conduzidos experimentos em casa de vegetação da Faculdade de Agronomia Eliseu Maciel (UFPel, no município de Capão do Leão (RS. Os tratamentos constaram de dois cultivares de arroz irrigado (IRGA 417 e IRGA 422CL e de sete doses dos herbicidas imazethapyr + imazapic e nicosulfuron, aplicados em arroz (estádios de desenvolvimento V2 ou V4. As variáveis analisadas foram fitotoxicidade dos herbicidas, estatura de planta, massa seca da parte aérea e área foliar. Houve interações significativas entre os fatores estudados para as variáveis-respostas avaliadas. Incrementos nas doses dos herbicidas resultaram em respostas crescentes de fitotoxicidade ao arroz, resultando em redução no crescimento das plantas. O cultivar IRGA 417 foi suscetível à ação dos herbicidas. Por sua vez, a tolerância do cultivar IRGA 422CL não é restrita à mistura formulada de imazethapyr + imazapic, ocorrendo também para o herbicida nicosulfuron.The objective of this study was to evaluate the tolerance of rice cultivars to the formulated mixture of nicosulfuron and imazethapyr + imazapic. Greenhouse experiments were carried out at the Faculdade de Agronomia Eliseu Maciel (UFPel in Capão do Leão (RS. The treatments consisted of two rice cultivars ('IRGA 417' and 'IRGA 422CL' and seven rates of the herbicides imazethapyr + imazapic and nicosulfuron, applied on rice (stages V2 or V4. The variables evaluated were herbicide injury, plant height, shoot dry biomass and leaf area. Significant interactions were found among the factors tested for the response-variables evaluated. Increased herbicide rates resulted in increased rice injury responses leading to decreases in plant height, biomass, and leaf area. 'IRGA 417' cultivar was susceptible to the herbicides. On the other hand, the

  20. Reaction of rice cultivars to a virulent Rice Yellow Mottle Virus strain ...

    African Journals Online (AJOL)

    has long been an important food staple for many traditional rice growing communities. Key developments in efforts to improve rice ... Appropriate sources of resistance to RYMV should be identified and characterised in order to pyramid genes for both complete and partial resistance. In this study, reaction of nine (9) rice ...

  1. Germination potential index of Sindh rice cultivars on biochemical ...

    African Journals Online (AJOL)

    use

    2011-12-14

    Dec 14, 2011 ... Full Length Research Paper. Germination potential index of Sindh ... α-amylase activity is a biochemical indicator showing different germination abilities of rice varieties, leading to different seed vigor. Among ... production of this foreign commodity may be due to many constraints such as poor seed quality, ...

  2. Differences in responses to flooding by germinating seeds of two contrasting rice cultivars and two species of economically important grass weeds.

    Science.gov (United States)

    Estioko, Lucy P; Miro, Berta; Baltazar, Aurora M; Merca, Florinia E; Ismail, Abdelbagi M; Johnson, David E

    2014-10-20

    Crop productivity is largely affected by abiotic factors such as flooding and by biotic factors such as weeds. Although flooding after direct seeding of rice helps suppress weeds, it also can adversely affects germination and growth of rice, resulting in poor crop establishment. Barnyard grasses (Echinochloa spp.) are among the most widespread weeds affecting rice, especially under direct seeding. The present work aimed to establish effective management options to control these weeds. We assessed the effects of variable depths and time of submergence on germination, seedling growth and carbohydrate metabolism of (i) two cultivars of rice known to differ in their tolerance to flooding during germination and (ii) two barnyard grasses (Echinochloa colona and E. crus-galli) that commonly infest rice fields. Flooding barnyard grasses with 100-mm-deep water immediately after seeding was effective in suppressing germination and growth. Echinochloa colona showed greater reductions in emergence, shoot and root growth than E. crus-galli. Delaying flooding for 2 or 4 days was less injurious to both species. Echinochloa colona was also more susceptible to flooding than the flood-sensitive rice cultivar 'IR42'. The activity of alcohol dehydrogenase (ADH) and pyruvate decarboxylase (PDC) in rice seedlings was increased by flooding after sowing but with greater increases in 'Khao Hlan On' compared with 'IR42'. The activity of ADH and PDC was enhanced to a similar extent in both barnyard grasses. Under aerobic conditions, the activity of ADH and PDC in the two barnyard grasses was downregulated, which might contribute to their inherently faster growth compared with rice. Aldehyde dehydrogenase activity was significantly enhanced in flood-tolerant 'Khao Hlan On' and E. crus-galli, but did not increase in flood-sensitive E. colona and 'IR42', implying a greater ability of the flood-tolerant types to detoxify acetaldehyde generated during anaerobic fermentation. Confirmation of this

  3. Studies susceptibility of peas and field peas cultivars to Ascochyta pinodes (Jones

    Directory of Open Access Journals (Sweden)

    Helena Furgał-Węgrzycka

    2013-12-01

    Full Text Available The aim of the work was to find plants resistant to Ascochyta pinodes causing leaf and pod spot-pot of peas and field peas. Fourty five cultivars of peas and field peas and 6 breeding materials were tested in the field in the period 1975-1979 on artificially inoculated field plots. Cultivars: Bartel, Birte, Bodil, Borek, Jubilat, Karo, Meteor, Rondo and Żółty Pomorski were to found be less susceptible. In laboratory and greenhouse conditions pea and field pea cultivars were examined for susceptibility. to pathotypes 3 and 5 of Ascochyta pinodes. The results obtained proved that cultivars: Bartel, Birte, Bodil, Borek, Jubilat, Karo, Meteor, Rondo and Żółty Pomorski to be less susceptible to two pathotypes of Ascochyta pinodes.

  4. Genetic analysis of Resistance to Rice Bacterial blight in Uganda ...

    African Journals Online (AJOL)

    Rice bacterial blight (Xanthomonas oryzae pv.oryzae) is a major constraint to rice (Oryza sativa L.) production in Uganda and as part of strategies to develop resistant cultivars, it is important to evaluate resistance of commonly used cultivars. A full-diallel mating design involving three resistant and three susceptible rice ...

  5. Molecular characterization and genetic diversity analysis of different rice cultivars by microsatellite markers

    Directory of Open Access Journals (Sweden)

    Allhgholipour Mehrzad

    2014-01-01

    Full Text Available A total of 52 rice SSR markers well distributed on 12 chromosomes were used to characterize and assess the genetic diversity among ninety four rice genotypes. The total number of polymorphic alleles was 361 alleles with the average of 5.86 alleles per SSR locus. The study revealed that some markers such as RM276 and RM5642 on chromosome 6 and RM14 and RM1 on chromosome 1 have more than 9 observed alleles compared to other primers like RM16, RM207, RM208 and RM317 with 3-4 alleles. The highest and lowest PIC values were observed for primers RM276 (0.892 and RM208 (0.423 respectively. Using Shannon´s diversity index, a mean genetic diversity of 1.641 was obtained from the analysis, indicating a high level of genetic variation among these cultivars. Cluster analysis using the complete linkage method based on jaccard similarity coefficient revealed that all genotypes were classified to nine clusters at genetic similarity level of 0.010.75, which contained 12, 16, 2, 18, 3, 6, 16, 10 and 11 varieties, respectively. Results of discriminant analysis showed that the nine cluster groups were confirmed at high levels of correct percent (96.8 and revealed true differences among these clusters. As a final result from this study, we selected eight cultivars from different cluster including Daylamani, Tarom mohali (landrace rice cultivars, RI1843046, Back cross line, RI184472, RI184421 (promising cultivars, Line 23 and IR50 (IRRI lines as parents. All of the selected cultivars will be arranged in complete diallel design to obtain combining abilities, gene effects and heterosis for each important morphology and physico-chemical characters.

  6. Genome-wide DNA polymorphisms in Kavuni, a traditional rice cultivar with nutritional and therapeutic properties.

    Science.gov (United States)

    Rathinasabapathi, Pasupathi; Purushothaman, Natarajan; Parani, Madasamy

    2016-05-01

    Although rice genome was sequenced in the year 2002, efforts in resequencing the large number of available accessions, landraces, traditional cultivars, and improved varieties of this important food crop are limited. We have initiated resequencing of the traditional cultivars from India. Kavuni is an important traditional rice cultivar from South India that attracts premium price for its nutritional and therapeutic properties. Whole-genome sequencing of Kavuni using Illumina platform and SNPs analysis using Nipponbare reference genome identified 1 150 711 SNPs of which 377 381 SNPs were located in the genic regions. Non-synonymous SNPs (62 708) were distributed in 19 251 genes, and their number varied between 1 and 115 per gene. Large-effect DNA polymorphisms (7769) were present in 3475 genes. Pathway mapping of these polymorphisms revealed the involvement of genes related to carbohydrate metabolism, translation, protein-folding, and cell death. Analysis of the starch biosynthesis related genes revealed that the granule-bound starch synthase I gene had T/G SNPs at the first intron/exon junction and a two-nucleotide combination, which were reported to favour high amylose content and low glycemic index. The present study provided a valuable genomics resource to study the rice varieties with nutritional and medicinal properties.

  7. evaluation of rice cultivars for resistance to rice yellow mottle virus ...

    African Journals Online (AJOL)

    ACSS

    2018-02-08

    Feb 8, 2018 ... H. KAM, M.-N. NDJIONDJOP1, N. OUEDRAOGO, M.D. LAING2 and A. GHESQUIERE3. Environmental and Agricultural Research Institute (INERA), 01 910 Bobo - Dioulasso, Burkina Faso. 1Africa Rice Center (AfricaRice), 01 BP 2551 Bouaké, Côte d'Ivoire. 2University of KwaZulu-Natal (UKZN), School of ...

  8. Susceptibility of glutinous rice starch to digestive enzymes.

    Science.gov (United States)

    Guo, Li; Zhang, Juanjuan; Hu, Jian; Li, Xueling; Du, Xianfeng

    2015-09-05

    To understand the susceptibility of glutinous rice starch to digestive enzymes and its potential impact on glycemic response, enzyme kinetics and in vitro digestibility of the native and gelatinized starches were investigated. The results showed that the Km values of the native and gelatinized starch were 10.35 mg/mL and 9.92 mg/mL, respectively. The digestion rate coefficients k values of the native and gelatinized starches were 2.0 × 10(-3)min(-1) and 1.1 × 10(-2)min(-1), respectively. The contents of rapid digestible starch (RDS), slowly digestible starch (SDS) and resistant starch (RS) in native glutinous rice starch were 8.92%, 21.52% and 69.56%, respectively. After gelatinization, the amounts of RDS, SDS and RS were 18.47%, 29.75% and 51.78%, respectively. The native and gelatinized glutinous rice starches were 10.34% and 14.07% for hydrolysis index (HI), as well as 43.14% and 45.92% for glycemic index (GI), respectively. During the in vitro digestion, the crystallinity of native glutinous rice starch was increased from 34.7% to 35.8% and 38.4% after 20 and 120 min, respectively. Copyright © 2015 Elsevier Ltd. All rights reserved.

  9. Allele-specific marker-based assessment revealed that the rice blast resistance genes Pi2 and Pi9 have not been widely deployed in Chinese indica rice cultivars.

    Science.gov (United States)

    Tian, Dagang; Chen, Zaijie; Chen, Ziqiang; Zhou, Yuanchang; Wang, Zonghua; Wang, Feng; Chen, Songbiao

    2016-12-01

    The most sustainable approach to control rice blast disease is to develop durably resistant cultivars. In molecular breeding for rice blast resistance, markers developed based on polymorphisms between functional and non-functional alleles of resistance genes, can provide precise and accurate selection of resistant genotypes without the need for difficult, laborious and time-consuming phenotyping. The Pi2 and Pi9 genes confer broad-spectrum resistance against diverse blast isolates. Development of allele-specific markers for Pi2 and Pi9 would facilitate breeding of blast resistant rice by using the two blast resistance genes. In this work, we developed two new markers, named Pi9-Pro and Pi2-LRR respectively, targeting the unique polymorphisms of the resistant and susceptible alleles of Pi2 and of Pi9. The InDel marker Pi9-Pro differentiates three different genotypes corresponding to the Pi2/Piz-t, Pi9 and non-Pi2/Piz-t/Pi9 alleles, and the CAPS marker Pi2-LRR differentiates the Pi2 allele from the non-Pi2 allele. Based on the two newly developed markers and two available markers Pi2SNP and Pi9SNP, the presence of Pi2 and Pi9 was assessed in a set of 434 rice accessions consisting of 377 Chinese indica cultivars/breeding materials and 57 Chinese japonica cultivars/breeding materials. Of the 434 accessions tested, while one indica restorer line Huazhan was identified harboring the Pi2 resistance allele, no other rice line was identified harboring the Pi2 or Pi9 resistance alleles. Allele-specific marker-based assessment revealed that Pi2 and Pi9 have not been widely incorporated into diverse Chinese indica rice cultivars. Thus, the two blast resistance genes can be new gene sources for developing blast resistant rice, especially indica rice, in China. The two newly developed markers should be highly useful for using Pi2 and Pi9 in marker-assisted selection (MAS) breeding programs.

  10. Susceptibility of Some Dry Date Cultivars to Infestation by Oryzaephilus surinamensis (L.) (Coleoptera: Silvanidae)

    OpenAIRE

    Sawsan S. Moawad; Al-Ghamdi, F. F.

    2013-01-01

    Susceptibility of eight date cultivars (namely Barhi, Barni Al Madina, Deglet Noor, Rushodia, Sukari, Ajwa, Mabroom and Nabtat Ali) to an attack by saw-toothed grain beetle Oryzaephilus surinamensis (L.), was estimated under laboratory conditions. Physical characteristics (texture, shapes and colour) and chemical constituents (total amount soluble solid, sugar, moisture, nitrogen, lipids, and fatty acid and percentage of ash) of the tested date cultivars were recorded. The laboratory evaluati...

  11. Assessment of the process of movement of Xylella fastidiosa within susceptible and resistant grape cultivars.

    Science.gov (United States)

    Baccari, C; Lindow, S E

    2011-01-01

    To better understand the processes contributing to symptoms and resistance to Pierce's disease of grape, we examined the movement and multiplication of a green fluorescent protein-marked strain of Xylella fastidiosa in the stems and petioles of Cabernet Sauvignon, Chenin Blanc, Roucaneuf, and Tampa grape cultivars that differ in their susceptibility to this disease. X. fastidiosa achieved much lower population sizes and colonized fewer xylem vessels in the stem of resistant cultivars compared with more susceptible cultivars. In contrast, X. fastidiosa achieved similarly high population sizes and colonized a similar proportion of the vessels in petioles of susceptible and resistant cultivars, suggesting that, compared with the stem, X. fastidiosa is relatively unrestricted in its movement and growth within the petiole. There was not a direct relationship between the population size of X. fastidiosa in the stem and the proportion of vessels colonized; a much higher population size of the pathogen was observed in susceptible cultivars than expected based on the proportion of vessels colonized. The high population sizes of X. fastidiosa in stems of susceptible genotypes were associated with both a high number of infected vessels and a much higher extent of colonization of those vessels that become infested than in more resistant cultivars. The formation of large cellular aggregates in vessels is not required for X. fastidiosa to move laterally in the stem to adjacent vessels because most vessels harbored only small assemblages, especially in resistant cultivars such as Roucaneuf, in which some intervessel movement was detected. Resistance to Pierce's disease is apparently not due to inhibitory compounds that circulate in the xylem because they might be expected to operate similarly in all tissues.

  12. Protection of susceptible potato cultivars against late blight in mixtures increases with decreasing disease pressure.

    Science.gov (United States)

    Pilet, F; Chacón, G; Forbes, G A; Andrivon, D

    2006-07-01

    ABSTRACT Cultivar mixtures can reduce potato late blight severity on susceptible cultivars. While alternating rows of susceptible and resistant cultivars would be more acceptable than random mixtures for commercial use, they increase the genotype unit area, which is an unfavorable factor for mixture efficiency, and have been minimally efficient when disease pressure is high. The effects of disease pressure on the performance of alternating rows of cultivars possessing various types and levels of resistance were investigated in 2000 and 2001 near Quito, Ecuador, where natural pressure of late blight is high. The experiments included the highly susceptible cvs. Cecilia in 2000 and LBr37 in 2001, as well as C114 (moderately resistant) and PAN (highly resistant), planted as pure stands and as the three possible two-way combinations. Different disease pressures were obtained with three spraying schedules of a contact fungicide: nontreated, one spray every second week, and one spray weekly. The area under the disease progress curve (AUDPC) on the susceptible cultivar was 0 to 20% less in mixed than in pure plots when no fungicide was applied, 13 to 26% less with a biweekly application of fungicide, and 32 to 53% less with a weekly application. These values are comparable to those obtained in previous experiments in smaller plots with designs maximizing the distance between susceptible plants. No significant differences in mixture performance were observed according to the resistant cultivar included. Effects on yield were minimal, because of the impact of factors other than late blight. Disease pressure therefore appears as a major factor conditioning the efficiency of potato cultivar mixtures against late blight.

  13. Phenolic compounds of apple cultivars resistant or susceptible to Venturia inaequalis.

    Science.gov (United States)

    Arici, Serife Evrim; Kafkas, Ebru; Kaymak, Suat; Koc, Namik Kemal

    2014-07-01

    Phenolic compounds play an important role in the plant defense mechanism and are responsible for antioxidant capacity in fruits and vegetables. It is known that the phenolics can determine in the leaves of plants which are resistant/susceptible to fungal infections. This study investigated the total phenolic compounds, content of shikimic acid from 33 different apple cultivars leaves infected with Venturia inaequalis [(Cke). Wint.] cultured in Fruit Research Station, in Egirdir, Isparta, Turkey. Leaves of apple cultivars were collected three times in an interval of 30 d from July to September in 2010, and analyzed using HPLC methods to detect changes in the amount of the phenolic compounds and shikimic acid. Total phenolic compounds and shikimic acid in resistant/moderate susceptible apple cultivars were higher than susceptible apple cultuvars, although not statistically different between resistant and susceptible apples. The content of shikimic acid was statistically higher only in the leaves of the domestic cultivar Ankara güzeli on all three dates. Recently, there have been increased studies trying to explain the resistance mechanism in plants. Natural resistance genes are investigated in some apple cultivars and new resistance varieties which have resistant genes are identified daily. Our study hold to determine the relationship between the phenolic compounds and the expression of resistance seems to be promising.

  14. Palatable and bio-functional wheat/rice products developed from pre-germinated brown rice of super-hard cultivar EM10.

    Science.gov (United States)

    Nakamura, Sumiko; Satoh, Hikaru; Ohtsubo, Ken'ichi

    2010-01-01

    It became possible to produce high-quality and bio-functional wheat/rice bread and wheat/rice noodles by blending, pre-germinated and cooked brown rice of a super-hard cultivar with wheat flour. Super-hard rice (SHR) is not suitable for table rice because of its low palatability. Nevertheless, it was found to be suitable as a blending material for bread-making or noodle-making due to its hard texture and high content of resistant starch. We developed a novel rapid germination method to improve the quality and to save the time needed for germination. By blending pre-germinated and cooked SHR (30% w/w on a dry basis) as a rice gel with wheat flour (70% w/w on a dry basis), the bread became very soft and any hardening after bread-making was markedly retarded. Similarly, blending pre-germinated and cooked SHR as cooked a rice gel with wheat flour gave high-quality noodles with a similar texture to that of durum semolina noodles. The resistant starch of the SHR-blended bread and noodles was also markedly increased. White waxy rice (9%) soaked and cooked with the pre-germinated brown rice of SHR (21%) produced a rice gel that was very useful as a material for bread-making and noodle-making by blending with wheat flour (70%) to prepare soft, tasty and bio-functional wheat/rice bread and wheat/rice noodles.

  15. Susceptibility of different parsley cultivars to infestation by pathogenic fungi

    Directory of Open Access Journals (Sweden)

    Jacek Nawrocki

    2012-12-01

    Full Text Available The experiments were carried out in the years 2002 and 2003 on parsley seeds of 6 cultivars: Alba, Berlińska, Cukrowa, Kinga, Lenka, and Vistula. Mycological analysis of parsley seeds showed that the most common inhabitans were fungi from genus Alternaria (mainly A. alternata and A. radicina and Fusarium, especially F. avenaceum and F. oxysporum. During the glasshouse investigations fungi Alternaria radicina, A. alternata and Fusarium avenaceum were the main reason for parsley damping-off. The highest number of infected seedlings was observed for Berlińska and Kinga, because in both years of experiments these cultivars had the lowest number of healthy seedlings. The highest number of healthy seedlings had cultivars Alba and Lenka, especially in the second year of experiments. In the field experiments not only fungi from genus Alternaria and Fusarium were the most often isolated from diseased parsley seedlings. Fusarium oxysporum was more often isolated from diseased field seedlings than from glasshouse parsley seedlings. Other fungies isolated often from parsley seedlings cultivated in the field were: Pythium spp., Rhizoctonia solani, Cylindrocarpon destructans and Stemphylium botryosum.

  16. Effect of gamma irradiation on physicochemical, functional and pasting properties of some locally-produced rice (Oryza spp) cultivars in Ghana

    Science.gov (United States)

    Ocloo, Fidelis C. K.; Owureku-Asare, Mavis; Agyei-Amponsah, Joyce; Agbemavor, Wisdom S. K.; Egblewogbe, Martin N. Y. H.; Apea-Bah, Franklin B.; Sarfo, Adjoa; Apatey, John; Doku, Henry; Ofori-Appiah, Dora; Ayeh, Ernestina

    2017-01-01

    Rice (Oryza sativa L.) is a staple crop in Ghana and much of West Africa, where it serves as an important convenience food for urban consumers. The objective of this study was to determine the effect of gamma irradiation as insect disinfestation technique on some physicochemical, functional and pasting properties of selected locally-produced rice cultivars in Ghana. Four local rice cultivars and an imported (commercial) type were purchased, cleaned and irradiated at doses of 0.0, 0.25, 0.50, 0.75, 1.0 and 1.5 kGy. The irradiated rice cultivars were milled and their physicochemical, functional and pasting properties determined. There were reductions in pH and swelling power, as well as increase in solubility of rice cultivars after gamma irradiation. Gamma irradiation did not change the XRD pattern of the rice cultivars. Gamma irradiation significantly (P<0.05) decreased peak time for BAL and VNT rice cultivars. Gamma irradiation significantly (P<0.05) decreased PV, HPV, BDV, FV and SBV for all the rice cultivars. This study shows that flours from gamma irradiated rice cultivars have potential in food formulations that require low viscosity.

  17. Morphological and anatomical characters of apple leaves associated with cultivar susceptibility to spider mite infestation

    Directory of Open Access Journals (Sweden)

    Wojciech Warabieda

    2013-12-01

    Full Text Available Morphological and anatomical chaIacters of apple leaves associated with cultivar susceptibility to two-spotted spider mite (Tetranychus urticae (Koch. infestation were investigated. The following six apple cultivars were selected for the research: Close, Lobo ( suceptible and Katja, Piros, Jester, Maivit (more resistant to mites infestation. The cultivars of a relatively lower susceptibility, (except Marvit were provided with a poorer pubescence on abaxial epidermis of foliage leaf than those susceptible. There was no strict correlation between stomata number per unit of the leaf surface and the susceptibility to T.urticae infestation. A tight cell arrangement in the spongy mesophyll was particularly characteristic for cv Marvit, whereas in the leaves of cvs Close and Lobo this tissue was definitely loose. It seems that loose spongy mesophyll structure may facilitate feeding of mites.The results regarding the analysis of the lower (abaxial epidermis of the leaves seem to suggest that the layout and thickness of cuticle, rather than the epidermal thickness itself could be a factor determining the susceptibility of apple cultivars to T.urcitae.

  18. Blueberry Cultivars Differ in Susceptibility to the Elephant Weevil, Orthorhinus cylindrirostris (Coleoptera: Curculionidae).

    Science.gov (United States)

    Murdoch, Gregory; Clift, Alan D; Mansfield, Sarah

    2017-10-01

    The accumulated damage from elephant weevil larvae, Orthorhinus cylindrirostris (F.) (Coleoptera: Curculionidae), reduces blueberry yield and shortens the productive lifespan of blueberry plants by several years. Selective breeding to develop pest-resistant blueberry cultivars is a possible control option, but the relationship between O. cylindrirostris populations, plant damage, and blueberry yield has not been described. A field survey of 17 blueberry cultivars was conducted on a commercial farm to measure O. cylindrirostris populations (emergence holes and adult numbers) and yield from plants of different ages (2-12 yr). Blueberry plants accumulated damage over time, that is, older plants tended to have more O. cylindrirostris emergence holes than younger plants. All cultivars received some level of O. cylindrirostris attack but this did not always lead to yield losses. Newer cultivars that have been in production since 2000 were less susceptible to O. cylindrirostris than older cultivars. Removal of highly susceptible cultivars from commercial blueberry farms may reduce O. cylindrirostris populations. There is potential for selective breeding to increase plant resistance to O. cylindrirostris if the specific resistance mechanisms can be identified in blueberry. © The Author 2017. Published by Oxford University Press on behalf of Entomological Society of America. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

  19. Evaluation of methane emissions of some rice cultivars of Sri Lanka

    Energy Technology Data Exchange (ETDEWEB)

    Namaratne, S.Y.; Alwis, H.P.W. de [Institute of Fundamental Studies, Kandy (Sri Lanka)

    1996-12-31

    A field experiment on three local rice cultivars, namely BG 300, BG 304 and AT 303, showed no statistically significant difference (p<0.05) among them with-respect to the methane flux emitted. The methane flux profiles of all three varieties indicated a more or less constant emission during the vegetative and reproductive periods, a peak emission during late flowering/early ripening stage and a dramatic increase in the flux during the late ripening period. The seasonal methane flux of BG 300, BG 304 and AT 303 were 200 {+-} 48, 156 {+-} 52 and 129 {+-} 40 g m{sup {minus}2}, respectively for a 92 day cropping period.

  20. Nitrogen fertilizer management for tidal submergence tolerant landrace rice (Oryza sativa L. cultivars

    Directory of Open Access Journals (Sweden)

    M.A.A. Mamun

    2017-12-01

    Full Text Available In tidal submergence ecosystem, nitrogen (N is a crucial nutrient for improved and sustainable rice production. Therefore, a series of on-farm and on-station field experiments were conducted to develop a suitable N management practice for tidal submergence tolerant landrace aman rice. In on-farm, urea deep placement (UDP through urea super granule before panicle initiation (PI stage was compared with no fertilizer application. Similarly, five N fertilizer management practices viz. (i. two splits of prilled urea (PU, (ii. UDP at 10 DAT, (iii. UDP before PI, (iv. full dose PU before PI and (v. No urea (control were compared at on-station trial. Tidal submergence tolerance aman rice varieties (Rajashail, Kutiagni, Sadamota and Lalmota were used as testing materials. In on farm experiment, aman cultivars produced 2.0–2.5 t ha−1 grain without N fertilizer. But, cultivated Rajashail, Kutiagni, Sadachikon, Sadapajam, Lalmota and Sadamota gave 3.0–3.5 t ha−1 grain yield with the UDP before PI in tidal prone areas. Though UDP required fertilizer and application cost but it gave profit upto 22,000 BDT ha−1 (Bangladeshi Taka. In on-station experiment, UDP before PI stage significantly increased rice yield and economic return although it was comparable to two splits of PU and top dressing of PU before PI stage. However, UDP at 10 DAT increased straw yield but failed to increase grain yield even compared to control. It could be concluded that UDP before PI stage of rice is an effective method for increasing rice yield and farm income in tidal prone areas.

  1. Susceptibility levels and grouping of peach cultivars in relation to peach rust under field conditions

    Directory of Open Access Journals (Sweden)

    Giselda Alves

    2014-04-01

    Full Text Available The objective of this study was to assess susceptibility and classify peach cultivars in relation to rust (Tranzschelia discolor under field conditions. The study was conducted in an orchard during the 2007/08 and 2008/09 growing seasons and included the cultivars: Aurora 1, Chimarrita, Chiripá, Coral, Eldorado, Granada, Leonense, Maciel, Marli, Premier and Vanguarda. Several disease-related variables were evaluated, over a 10 day interval from September to February, based on estimates of disease incidence, severity and defoliation. The logistic model adequate fit to rust severity progress data (R2 > 0.90 in the two years. Principal component analysis (PCA using all data, irrespective of the year, identified area under the disease progress curve, initial inoculum and disease progress rate as the best variables to differentiate reactions to rust. When PCA analysis was conducted separately for each year, different disease-related variables were selected as a principal component, and cultivars were classified in three groups of susceptibility. There was inconsistency in the grouping of some cultivars, which was likely due to varying environmental conditions between the years. However, ‘Coral’ was consistently grouped in the low susceptibility group and ‘Chimarrita’ and ‘Granada’ in the high susceptibility group.

  2. Rapid Visco Analyzer Measurements of japonica Rice Cultivars to Study Interrelationship between Pasting Properties and Farming System

    Directory of Open Access Journals (Sweden)

    Amit Kesarwani

    2016-01-01

    Full Text Available Rheological properties influence the starch softness and cooking quality. Two japonica rice cultivars were studied that were cultivated under organic and conventional farming. Study was conducted for 2 years in popular japonica cultivars, that is, Kaohsiung number 139 and Taikeng number 16, which were grown twice a year in Taiwan. The results highlighted that major pasting properties such as peak viscosity, setback value, and pasting temperature improved under organic farming; however, in further analysis, eating and cooking quality reported no significant changes except aroma in rice.

  3. Differential Response of Two Scented Indica Rice (Oryza sativa Cultivars under Salt Stress

    Directory of Open Access Journals (Sweden)

    Sunita Danai-Tambhale

    2011-12-01

    Full Text Available Present report deals with the effect of varying (0 – 200 mM NaCl salt stress on two popular scented non-basmati type indica rice cultivars, namely Indrayani and Ambemohar on germination and growth and biochemical parameters. In the present investigation the effect of increasing salt stress was seen on germination, biomass production and biochemical parameters including total protein content, proline accumulation, starch content, polyphenols levels, and reducing and non-reducing sugars. Contrasting behavior was evidenced in both the cultivars in terms of germination rate and biomass production at seedling and early vegetative growth level. Salt stress-induced proline accumulation was observed in both the cultivars, however, with much higher extent of proline accumulation in Ambemohar than Indrayani. A salinity stress of 200 mM NaCl resulted into 305% higher proline content than the control plants of Ambemohar against 222% higher proline in Indrayani at the same stress level. Similarly protein content was also higher in Ambemohar than Indrayani at the highest stress level used in this study. Contrasting results were seen in terms of starch content amongst both the cultivars, where continuous decrease with increasing salt stress was observed in Indrayani, on the other hand, an increase in starch content was evident in Ambemohar under the influence of NaCl-induced salt stress. These finding clearly indicates the comparably higher salt tolerant nature of Ambemohar than Indrayani which might be attributed to higher proline, protein and starch content than Indrayani cultivar under salt stress.

  4. Analysis and comparison of fragrant gene sequence in some rice cultivars

    Directory of Open Access Journals (Sweden)

    Karami Noushafarin

    2016-01-01

    Full Text Available It is known that the fragrant trait in rice (Oryza sativa L. is largely controlled by fgr gene on chromosome 8 and it has been specified that the existence of an 8 bp deletion and three single nucleotide polymorphism (SNP in exon 7 is effective on this trait. In this study, sequence alignment analysis of fgr exon7 on chromosome 8 for 11 different fragrant and non-fragrant cultivars revealed that 5 aromatic rice cultivars carried 3 SNPs and 8 bp deletion in exon7 which terminates prematurely at a TAA stop codon. However, 5 of the non-aromatics showed a sequence identical to the published Nipponbare, being non-fragrant Japonica variety sequence. An exception among them was Bejar, which had 8 bp deletion and 3SNPs but it was non-aromatic. Sequencing can determine nucleotide alignment of a gene and give beneficial information about gene function. In silico prediction showed proteins sequences alignment of fgr gene for Khazar and Domsiah genotypes were different. Betaine aldehyde dehydrogenase complete enzyme belongs to Khazar non-fragrant genotype that has complete length and 503 amino acids while non-functional BADH2 enzyme for Domsiah fragrant genotype has 251 amino acids that result in accumulate 2-acetyl-1-pyrroline (2AP and produces aroma in fragrant genotypes.

  5. Multinucleate Rhizoctonia sp.: Pathogen of sugar beet and susceptibility of cultivars under field conditions

    Directory of Open Access Journals (Sweden)

    Vico Ivana M.

    2006-01-01

    Full Text Available Sugar beet root rot has severely occurred in our country recently, especially in localities of Pazova, Pećinci, Ruma, Sremska Mitrovica and Šid. From diseased roots as well as from soil collected from the localities where decay occurred, fungal isolates were obtained by bait plant method. Based on their characteristics, they were identified as multinucleate Rhizoctonia sp. During the year of 2004 in Mitrosrem trial field T-11, where the presence of multinucleate Rhizoctonia sp. was confirmed, an experiment under the coordination of Committee for Acknowledgement and Registration of New Cultivars in our country was conducted in order to determine cultivars' tolerance, i.e. their susceptibility and possibility for growing on infested fields. Six cultivars of sugar beet, Laetitia (as standard and five new ones were included in the investigation. The trial was conducted in accordance with the established and accepted method (Ministry of Agriculture, Forestry and Water Resources, Republic of Serbia. Susceptibility of investigated cultivars was evaluated according to significant production characteristics root yield, sugar content, corrected sugar content, thick juice Q, molasses sugar, content of K, Na and amino-N, polarized sugar yield and white sugar yield, as it was recommended by the method. Conducted investigations have revealed that tested sugar beet cultivars showed different reactions to natural infection with multinucleate Rhizoctonia sp. Concerning root yield as the most important agricultural characteristic, statistically significantly higher yield was obtained with the cultivar under code mark 5 (61.120 kg/ha whereas the cultivar marked under code 6 had significantly lower yield comparing to the standard (38.100 kg/ha.

  6. An improved protocol for efficient transformation and regeneration of diverse indica rice cultivars

    Directory of Open Access Journals (Sweden)

    Sahoo Khirod K

    2011-12-01

    Full Text Available Abstract Background Rice genome sequencing projects have generated remarkable amount of information about genes and genome architecture having tremendous potential to be utilized in both basic and applied research. Success in transgenics is paving the way for preparing a road map of functional genomics which is expected to correlate action of a gene to a trait in cellular and organismal context. However, the lack of a simple and efficient method for transformation and regeneration is a major constraint for such studies in this important cereal crop. Results In the present study, we have developed an easy, rapid and highly efficient transformation and regeneration protocol using mature seeds as explants and found its successful applicability to a choice of elite indica rice genotypes. We have optimized various steps of transformation and standardized different components of the regeneration medium including growth hormones and the gelling agent. The modified regeneration medium triggers production of large number of shoots from smaller number of calli and promotes their faster growth, hence significantly advantageous over the existing protocols where the regeneration step requires maximum time. Using this protocol, significantly higher transformation efficiency (up to 46% and regeneration frequency (up to 92% for the untransformed calli and 59% for the transformed calli were achieved for the four tested cultivars. We have used this protocol to produce hundreds of independent transgenic lines of different indica rice genotypes. Upon maturity, these transgenic lines were fertile thereby indicating that faster regeneration during tissue culture did not affect their reproductive potential. Conclusions This speedy, yet less labor-intensive, protocol overcomes major limitations associated with genetic manipulation in rice. Moreover, our protocol uses mature seeds as the explant, which can easily be obtained in quantity throughout the year and kept

  7. Host susceptibility of citrus cultivars to Queensland fruit fly (Diptera: Tephritidae).

    Science.gov (United States)

    Lloyd, A C; Hamacek, E L; Smith, D; Kopittke, R A; Gu, H

    2013-04-01

    Citrus crops are considered to be relatively poor hosts for Queensland fruit fly, Bactrocera tryoni (Froggatt), as for other tephritid species. Australian citrus growers and crop consultants have reported observable differences in susceptibility of different citrus cultivars under commercial growing conditions. In this study we conducted laboratory tests and field surveys to determine susceptibility to B. tryoni of six citrus cultivars [(Eureka lemon (Citrus limon (L.) Osbeck); Navel and Valencia oranges (C. sinensis (L.) Osbeck); and Imperial, Ellendale, and Murcott mandarins (C. reticulata Blanco). The host susceptibility of these citrus cultivars was quantified by a Host Susceptibility Index, which is defined as the number of adult flies produced per gram of fruit infested at a calculated rate of one egg per gram of fruit. The HSI was ranked as Murcott (0.083) > Imperial (0.052) > Navel (0.026) - Ellendale (0.020) > Valencia (0.008) > Eureka (yellow) (0.002) > Eureka (green) (0). Results of the laboratory study were in agreement with the level of field infestation in the four citrus cultivars (Eureka lemon, Imperial, Ellendale, and Murcott mandarins) that were surveyed from commercial orchards under baiting treatments against fruit flies in the Central Burnett district of Queensland. Field surveys of citrus hosts from the habitats not subject to fruit fly management showed that the numbers of fruit flies produced per gram of fruit were much lower, compared with the more susceptible noncitrus hosts, such as guava (Psidium guajava L.), cherry guava (P. littorale Raddi), mulberry (Morus nigra L.), loquat (Eriobotrya japonica (Thunb.) Lindl.), and pear (Pyrus communis L.). Therefore, the major citrus crops commercially cultivated in Australia have a relatively low susceptibility to B. tryoni, with Eureka lemons being a particularly poor host for this tephritid fruit fly.

  8. Field susceptibility of 13 scab-resistant apple cultivars to apple powdery mildew [Podosphaera leucotricha (Ell. et Ev. Salmon

    Directory of Open Access Journals (Sweden)

    Zbigniew Borecki

    2013-12-01

    Full Text Available Field susceptibility of 13 scab-resistant apple cultivars to apple powdery mildew was evaluated in 1983-1986. Four groups of susceptibility were distinguished. None of the 13 tested scab-resistant apple trees exhibited complete field immunity to apple powdery mildew. Two cultivars, 'Prima' and 'Primula', were practically resistant. 'Liberty' and two numbered selections, NY-140-9 and NY-158-2, belonged to the group of lower susceptibility. Moderate susceptibility was shown by: 'Novamac', 'Freedom', 'Gavin', 'Prima' and 'Florina'. The group of apple trees most susceptible to Podosphaera leucotricha included: 'Macfree', 'Priscilla' and 'Nova Easygro'. It is not necessary to use chemical sprays to control powdery mildew on 'Prima' and 'Primula'. A reduced spraying program may be recommended only under high disease pressure on less susceptible apple cultivars. A regular spray schedule is needed on moderately susceptible apple trees, but improved chemical control is necessary on the most susceptible ones.

  9. An ABRE-binding factor, OSBZ8, is highly expressed in salt tolerant cultivars than in salt sensitive cultivars of indica rice

    Directory of Open Access Journals (Sweden)

    Gupta Sudhiranjan

    2006-08-01

    Full Text Available Abstract Background The bZIP class Abscisic acid Responsive Element (ABRE-binding factor, OSBZ8 (38.5 kD has been considered to regulate ABA-mediated transcription in the suspension cultured cells of japonica rice. Still, nothing is known about the expression of OSBZ8 at protein level in vegetative tissue of salt sensitive and salt tolerant rice plants. In our previous study, Electrophoretic Mobility Shift Assay (EMSA of [32P]ABRE-DNA and nuclear extracts prepared from the lamina of Pokkali rice plants has detected the presence of an ABRE-binding factor. Northern analysis has also detected salinity stress induced accumulation of transcripts for bZIP class of factor. Therefore, OSBZ8 was considered to play an important role in the regulation of transcription in the vegetative tissue of rice. The aim of this study is to find out whether OSBZ8 has any role in regulating the NaCl-stress induced gene expression in vegetative tissue and whether the expression of OSBZ8 factor directly correlates with the stress tolerance of different varieties of indica type rice. Results Northern analysis of total RNA from roots and lamina of salt-sensitive M-I-48 and salt-tolerant Nonabokra, when probed with the N-terminal unique region of OSBZ8 (OSBZ8p, without the highly conserved basic region, a transcript of 1.3 kb hybridized and its level was much higher in tolerant cultivar. EMSA with Em1a, the strongest ABA Responsive Element till reported from the upstream of EmBP1, and the nuclear extracts from laminar tissue of untreated and salt-treated seedlings of three salt sensitive, one moderately sensitive and two salt tolerant indica rice cultivars showed specific binding of nuclear factor to ABRE element. Intensity of binding was low and inducible in salt sensitive rice cultivars while high and constitutive in salt tolerant cultivars. EMSA with 300 bp 5'upstream region of Rab16A gene, a well known salt stress and ABA-inducible gene of rice, showed formation of two

  10. An ABRE-binding factor, OSBZ8, is highly expressed in salt tolerant cultivars than in salt sensitive cultivars of indica rice

    Science.gov (United States)

    Mukherjee, Kakali; Choudhury, Aryadeep Roy; Gupta, Bhaskar; Gupta, Sudhiranjan; Sengupta, Dibyendu N

    2006-01-01

    Background The bZIP class Abscisic acid Responsive Element (ABRE)-binding factor, OSBZ8 (38.5 kD) has been considered to regulate ABA-mediated transcription in the suspension cultured cells of japonica rice. Still, nothing is known about the expression of OSBZ8 at protein level in vegetative tissue of salt sensitive and salt tolerant rice plants. In our previous study, Electrophoretic Mobility Shift Assay (EMSA) of [32P]ABRE-DNA and nuclear extracts prepared from the lamina of Pokkali rice plants has detected the presence of an ABRE-binding factor. Northern analysis has also detected salinity stress induced accumulation of transcripts for bZIP class of factor. Therefore, OSBZ8 was considered to play an important role in the regulation of transcription in the vegetative tissue of rice. The aim of this study is to find out whether OSBZ8 has any role in regulating the NaCl-stress induced gene expression in vegetative tissue and whether the expression of OSBZ8 factor directly correlates with the stress tolerance of different varieties of indica type rice. Results Northern analysis of total RNA from roots and lamina of salt-sensitive M-I-48 and salt-tolerant Nonabokra, when probed with the N-terminal unique region of OSBZ8 (OSBZ8p, without the highly conserved basic region), a transcript of 1.3 kb hybridized and its level was much higher in tolerant cultivar. EMSA with Em1a, the strongest ABA Responsive Element till reported from the upstream of EmBP1, and the nuclear extracts from laminar tissue of untreated and salt-treated seedlings of three salt sensitive, one moderately sensitive and two salt tolerant indica rice cultivars showed specific binding of nuclear factor to ABRE element. Intensity of binding was low and inducible in salt sensitive rice cultivars while high and constitutive in salt tolerant cultivars. EMSA with 300 bp 5'upstream region of Rab16A gene, a well known salt stress and ABA-inducible gene of rice, showed formation of two complexes, again very

  11. Influência de cultivares de arroz e épocas da adubação nitrogenada nas relações de interferência da cultura com cultivar simulador de infestação de arroz-vermelho Influence of rice cultivars and nitrogen fertilizer timing on the interference relationships between the crop and cultivar simulating red rice infestation

    Directory of Open Access Journals (Sweden)

    D. Agostinetto

    2004-06-01

    Full Text Available O objetivo deste trabalho foi avaliar os efeitos de cultivares de arroz irrigado e de épocas de adubação nitrogenada durante o ciclo da cultura sobre a habilidade competitiva do cereal em relação ao cultivar EEA 406, usado como simulador da planta daninha arrozvermelho. Para isso, conduziu-se experimento em campo, na estação de crescimento 2001/02. Os tratamentos, dispostos em esquema fatorial, constaram de cultivares de arroz (BRS-38 Ligeirinho, IRGA 417 e BR-IRGA 409, épocas de aplicação do nitrogênio (N (100% do N na semeadura, 50% do N na semeadura mais 50% no início da diferenciação da panícula (IDP, 100% no IDP e testemunha sem o adubo e populações do cultivar simulador do arroz-vermelho. Para relacionar as perdas de produtividade de grãos de arroz com populações do cultivar simulador, utilizou-se o modelo de regressão da hipérbole retangular, ajustado de modo independente para os fatores estudados. Verificou-se que a época de aplicação do N influenciou na habilidade competitiva dos cultivares de arroz. Cultivares de ciclo muito curto e curto apresentaram maior habilidade competitiva com o cultivar simulador, quando a adubação foi realizada na semeadura, enquanto o cultivar de ciclo médio se beneficiou do fracionamento da adubação na semeadura e no IDP.The objective of this study was to evaluate the effects of flooded rice cultivars and timings of nitrogen fertilizer application during the crop cycle on the competitive ability of this cereal in relation to EEA 406 cultivar, used as a mimicker of red rice. Thus, a field experiment was carried out during the 2001/02 growing season. The treatments were arranged in a factorial design,comprising the rice cultivars (BRS-38 Ligeirinho, IRGA 417, and BR-IRGA 409, nitrogen (N application timings (100% at sowing, 50% at sowing plus 50% at the beginning of panicle differentiation (BPD, 100% at BPD, and check without fertilizer, and densities of the mimicker cultivar. In

  12. Cultivar weed-competitiveness in aerobic rice : heritability, correlated traits, and the potential for indirect selection in weed-free environments

    NARCIS (Netherlands)

    Zhao, D.L.; Atlin, G.N.; Bastiaans, L.; Spiertz, J.H.J.

    2006-01-01

    Forty rice (Oryza sativa L.) cultivars and breeding lines used in the International Rice Research Institute (IRRI) upland rice breeding program were evaluated in adjacent weed-free and weedy trials in aerobic soil conditions during the wet seasons of 2001, 2002, and 2003. The objectives of this

  13. An improved Agrobacterium-mediated transformation of recalcitrant indica rice (Oryza sativa L.) cultivars.

    Science.gov (United States)

    Shri, Manju; Rai, Arti; Verma, Pankaj Kumar; Misra, Prashant; Dubey, Sonali; Kumar, Smita; Verma, Sikha; Gautam, Neelam; Tripathi, Rudra Deo; Trivedi, Prabodh Kumar; Chakrabarty, Debasis

    2013-04-01

    Agrobacterium-mediated transformation of indica rice varieties has been quite difficult as these are recalcitrant to in vitro responses. In the present study, we established a high-efficiency Agrobacterium tumefaciens-mediated transformation system of rice (Oryza sativa L. ssp. indica) cv. IR-64, Lalat, and IET-4786. Agrobacterium strain EHA-101 harboring binary vector pIG121-Hm, containing a gene encoding for β-glucuronidase (GUS) and hygromycin resistance, was used in the transformation experiments. Manipulation of different concentrations of acetosyringone, days of co-culture period, bacterial suspension of different optical densities (ODs), and the concentrations of L-cysteine in liquid followed by solid co-culture medium was done for establishing the protocol. Among the different co-culture periods, 5 days of co-culture with bacterial cells (OD600 nm = 0.5-0.8) promoted the highest frequency of transformation (83.04 %) in medium containing L-cysteine (400 mg l(-1)). Putative transformed plants were analyzed for the presence of a transgene through genomic PCR and GUS histochemical analyses. Our results also suggest that different cultural conditions and the addition of L-cysteine in the co-culture medium improve the Agrobacterium-mediated transformation frequencies from an average of 12.82 % to 33.33 % in different indica rice cultivars.

  14. Identification of salt tolerant rice cultivars via phenotypic and marker-assisted procedures.

    Science.gov (United States)

    Bhowmik, Salil Kumar; Islam, Mirza Mofazzal; Emon, Reza Mohammad; Begum, Shamsun Nahar; Siddika, Aysha; Sultana, Sharmin

    2007-12-15

    Eleven genotypes, including the salt tolerant cultivar Pokkali as check, were used to evaluate salinity tolerance phenotypically and genotypically. Three selected SSR primers viz., RM7075, RM336 and RM253 were used to evaluate rice genotypes for salt tolerance. Two setups were maintained for this study viz., the seedling and reproductive stages. Phenotyping at the seedling stage was done in hydroponic system using salinized (EC 12 dS m(-1)) nutrient solution and at the reproductive stage using salinized tap water (EC 6 dS m(-1)). IRRI standard protocol was followed to evaluate salinity tolerance in rice. The genotypes having similar banding pattern with Pokkali were considered as tolerant. Phenotypically, three genotypes Pokkali, THDB and TNDB-100 and five genotypes RD-2586, TNDB-100, Dhol Kochuri, PNR-519 and Pokkali were identified as salt tolerant at the seedling and reproductive stages, respectively. These genotypes were also identified as salt tolerant genotypically (with markers). Through phenotypic and genotypic study, five genotypes viz., Pokkali, Dhol Kochuri, RD-2586, TNDB-100 and PNR-519 were identified as salt tolerant. Therefore, these microsatellite markers used in this study could be efficiently used for identification of salt tolerant rice varieties in marker-assisted breeding and quantitative trait loci analysis.

  15. Comparison of aroma active and sulfur volatiles in three fragrant rice cultivars using GC-olfactometry and GC-PFPD.

    Science.gov (United States)

    Mahattanatawee, Kanjana; Rouseff, Russell L

    2014-07-01

    Aroma volatiles from three cooked fragrant rice types (Jasmine, Basmati and Jasmati) were characterised and identified using SPME GC-O, GC-PFPD and confirmed using GC-MS. A total of 26, 23, and 22 aroma active volatiles were observed in Jasmine, Basmati and Jasmati cooked rice samples. 2-Acetyl-1-pyrroline was aroma active in all three rice types, but the sulphur-based, cooked rice character impact volatile, 2-acetyl-2-thiazoline was aroma active only in Jasmine rice. Five additional sulphur volatiles were found to have aroma activity: dimethyl sulphide, 3-methyl-2-butene-1-thiol, 2-methyl-3-furanthiol, dimethyl trisulphide, and methional. Other newly-reported aroma active rice volatiles were geranyl acetate, β-damascone, β-damascenone, and ɑ-ionone, contributing nutty, sweet floral attributes to the aroma of cooked aromatic rice. The first two principal components from the principal component analysis of sulphur volatiles explained 60% of the variance. PC1 separated Basmati from the other two cultivars and PC2 completely separated Jasmine from Jasmati cultivars. Copyright © 2014 Elsevier Ltd. All rights reserved.

  16. Understanding salinity responses and adopting ‘omics-based’ approaches to generate salinity tolerant cultivars of rice

    Science.gov (United States)

    Das, Priyanka; Nutan, Kamlesh K.; Singla-Pareek, Sneh L.; Pareek, Ashwani

    2015-01-01

    Soil salinity is one of the main constraints affecting production of rice worldwide, by reducing growth, pollen viability as well as yield of the plant. Therefore, detailed understanding of the response of rice towards soil salinity at the physiological and molecular level is a prerequisite for its effective management. Various approaches have been adopted by molecular biologists or breeders to understand the mechanism for salinity tolerance in plants and to develop salt tolerant rice cultivars. Genome wide analysis using ‘omics-based’ tools followed by identification and functional validation of individual genes is becoming one of the popular approaches to tackle this task. On the other hand, mutation breeding and insertional mutagenesis has also been exploited to obtain salinity tolerant crop plants. This review looks into various responses at cellular and whole plant level generated in rice plants toward salinity stress thus, evaluating the suitability of intervention of functional genomics to raise stress tolerant plants. We have tried to highlight the usefulness of the contemporary ‘omics-based’ approaches such as genomics, proteomics, transcriptomics and phenomics towards dissecting out the salinity tolerance trait in rice. In addition, we have highlighted the importance of integration of various ‘omics’ approaches to develop an understanding of the machinery involved in salinity response in rice and to move forward to develop salt tolerant cultivars of rice. PMID:26442026

  17. Understanding Salinity Responses and Adopting ‘Omics-based’ Approaches to Generate Salinity Tolerant Cultivars of Rice

    Directory of Open Access Journals (Sweden)

    Priyanka eDas

    2015-09-01

    Full Text Available Soil salinity is one of the main constraints affecting production of rice worldwide, by reducing growth, pollen viability as well as yield of the plant. Therefore, detailed understanding of the response of rice towards soil salinity at the physiological and molecular level is a prerequisite for its effective management. Various approaches have been adopted by molecular biologists or breeders to understand the mechanism for salinity tolerance in plants and to develop salt tolerant rice cultivars. Genome wide analysis using ‘omics-based’ tools followed by identification and functional validation of individual genes is becoming one of the popular approaches to tackle this task. On the other hand, mutation breeding and insertional mutagenesis has also been exploited to obtain salinity tolerant crop plants. This review looks into various responses at cellular and whole plant level generated in rice plants towards salinity stress thus, evaluating the suitability of intervention of functional genomics to raise stress tolerant plants. We have tried to highlight the usefulness of the contemporary ‘omics-based’ approaches such as genomics, proteomics, transcriptomics and phenomics towards dissecting out the salinity tolerance trait in rice. In addition, we have highlighted the importance of integration of various ‘omics’ approaches to develop an understanding of the machinery involved in salinity response in rice and to move forward to develop salt tolerant cultivars of rice.

  18. Field assessment of the susceptibility of onion cultivars to thrips attack – preliminary results

    Directory of Open Access Journals (Sweden)

    Pobożniak Maria

    2016-03-01

    Full Text Available Field experiments on the susceptibility of onion to thrips infestation were carried out in 2012 and 2013. The investigation used 18 cultivars and 5 breeding lines of Allium cepa, and the species A. fistulosum and A. roylei. In 2012 A. fistulosum was one of the most infested plants, whereas in 2013 infestation was no more than average. The most infested cultivars of A. cepa were ‘Efekt’, ‘Alonso F1’, ‘Alibaba’ and ‘Wama’ and the ‘NOE5’ breeding line. In 2012 the extent of damage ranged from 12 to 55%, in 2013 from 20 to 30%. The ‘NOE2’, ‘NOE3’ and ‘Wama’ cultivars were the most seriously damaged by thrips. Leaf damage to A. fistulosum was minimal. No damage was caused to the wild species A. roylei by feeding onion thrips.

  19. Simple sequence repeat markers in genetic divergence and marker-assisted selection of rice cultivars: a review.

    Science.gov (United States)

    Kaur, Shubhneet; Panesar, Parmjit S; Bera, Manab B; Kaur, Varinder

    2015-01-01

    Sequencing of rice genome has facilitated the understanding of rice evolution and has been utilized extensively for mining of DNA markers to facilitate marker-assisted breeding. Simple sequence repeat (SSR) markers that are tandemly repeated nucleotide sequence motifs flanked by unique sequences are presently the maker of choice in rice improvement due to their abundance, co-dominant inheritance, high levels of allelic diversity, and simple reproducible assay. The current level of genome coverage by SSR markers in rice is sufficient to employ them for genotype identification and marker-assisted selection in breeding for mapping of genes and quantitative trait loci analysis. This review provides comprehensive information on the mapping and applications of SSR markers in investigation of rice cultivars to study their genetic divergence and marker-assisted selection of important agronomic traits.

  20. Effect of Pseudomonas Sp. Bacteria on Soil Chemical and Biological Properties, Yield and Its Components of Two Rice Cultivars

    Directory of Open Access Journals (Sweden)

    Z. AminDeldar

    2014-04-01

    Full Text Available To evaluate the effect of plant growth promoting bacteria (PGPB on soil physical and chemical indices, yield and its components of two rice cultivars, an experiment was arranged in Rice Researches Institute of Guilan Province during 2009. The experiment design consisted of four randomized complete blocks in a factorial arrangement having 16 treatments in every block. In this research, two factors were evaluated: first, two cultivars (Khazar and Hashemi and second, eight levels of seed inoculation with PGPB (P.fluorescens strain 168, P.fluorescens strain 93, P.fluorescens strain 177, P.fluorescens strain 136, P.fluorescens strain 103, P.fluorescens strain 169, P.fluorescens strain 4 and control (without inoculation. Investigated characteristics consisted of: soil minerals, no.microorganisms in soil, grain yield, number of seed per panicle, number of seed per plant, 1000-seed weight, biological and economic yield. In this experiment, effect of cultivar and bacteria were significant in the most of studied characteristics, but effect of cultivar*bacteria (except yield components wasn’t significant. The results of experiment showed that inoculation with bacterial strains had a stimulating effect on growth and development of rice cultivars. In this experiment, Khazar had positive effect on the most of studied characteristics in compared with Hashemi. Between bacterial different strains, seed inoculation with 168, 177 and 93 strains in compared with other strains increased evaluated characteristics significantly. Seed inoculation with PGPB improved studied characteristics and microorganisms in soil, too.

  1. Transcriptome analysis of resistant and susceptible alfalfa cultivars infected with root-knot nematode Meloidogyne incognita.

    Science.gov (United States)

    Postnikova, Olga A; Hult, Maria; Shao, Jonathan; Skantar, Andrea; Nemchinov, Lev G

    2015-01-01

    Nematodes are one of the major limiting factors in alfalfa production. Root-knot nematodes (RKN, Meloidogyne spp.) are widely distributed and economically important sedentary endoparasites of agricultural crops and they may inflict significant damage to alfalfa fields. As of today, no studies have been published on global gene expression profiling in alfalfa infected with RKN or any other plant parasitic nematode. Very little information is available about molecular mechanisms that contribute to pathogenesis and defense responses in alfalfa against these pests and specifically against RKN. In this work, we performed root transcriptome analysis of resistant (cv. Moapa 69) and susceptible (cv. Lahontan) alfalfa cultivars infected with RKN Meloidogyne incognita, widespread root-knot nematode species and a major pest worldwide. A total of 1,701,622,580 pair-end reads were generated on an Illumina Hi-Seq 2000 platform from the roots of both cultivars and assembled into 45,595 and 47,590 transcripts in cvs Moapa 69 and Lahontan, respectively. Bioinformatic analysis revealed a number of common and unique genes that were differentially expressed in susceptible and resistant lines as a result of nematode infection. Although the susceptible cultivar showed a more pronounced defense response to the infection, feeding sites were successfully established in its roots. Characteristically, basal gene expression levels under normal conditions differed between the two cultivars as well, which may confer advantage to one of the genotypes toward resistance to nematodes. Differentially expressed genes were subsequently assigned to known Gene Ontology categories to predict their functional roles and associated biological processes. Real-time PCR validated expression changes in genes arbitrarily selected for experimental confirmation. Candidate genes that contribute to protection against M. incognita in alfalfa were proposed and alfalfa-nematode interactions with respect to resistance

  2. Influence and interaction of iron and cadmium on photosynthesis and antioxidative enzymes in two rice cultivars.

    Science.gov (United States)

    Liu, Houjun; Zhang, Chengxin; Wang, Junmei; Zhou, Chongjun; Feng, Huan; Mahajan, Manoj D; Han, Xiaori

    2017-03-01

    In this study, a soil pot experiment was conducted to investigate the changes in photosynthesis and antioxidative enzymes in two rice varieties (Shendao 6 and Shennong 265) supplied with iron (Fe), cadmium (Cd), and Fe and Cd together. The concentrations of Fe and Cd in the soil were 0, 1.0 g Fe·kg-1 and 0, 2.0 mg Cd·kg-1, respectively. Photosynthetic indices and antioxidative enzyme activities were recorded at different rice growth stages. At the early stage, Cd showed a transient stimulatory effect on the photosynthetic rate of Shennong 265. For Shendao 6, however, Cd showed a transient stimulatory effect on photosynthetic rate, intercellular CO2 concentration, stomatal conductance and transpiration efficiency. In addition, the results show that Cd can also enhance the superoxide dismutase (SOD) and peroxidase (POD) activities, but reduce the malondialdehyde (MDA) and soluble protein contents in the two rice cultivars. Subsequently, Cd starts to inhibit photosynthesis and SOD activity until the ripening stage, causing the lowest photosynthetic rate and SOD activity at this stage. In contrast, Fe alleviates the Cd-induced changes at earlier or later growth stage. Notably at the later growth stage, the results show that the interaction between Fe and Cd increases the SOD and catalase (CAT) activities, while decreasing the lipid peroxidation and promoting photosynthesis. As a result, it ultimately increases the biomass. The results from this study suggest that Fe (as Fe fertilizer) is a promising alternative for agricultural use to enhance the plant development and, simultaneously, to reduce Cd toxicity in extensively polluted soils. Copyright © 2016 Elsevier Ltd. All rights reserved.

  3. Carbohydrate content and antioxidative potential of the seed of three edible indica rice (Oryza sativa L.) cultivars.

    Science.gov (United States)

    Basu, Supratim; Roychoudhury, Aryadeep; Sanyal, Saptadwipa; Sengupta, Dibyendu N

    2012-04-01

    Rice (Oryza sativa L.) grains or seeds are known to lose much of their nutrient and antioxidant contents, following polishing. The current study was undertaken to evaluate and compare the carbohydrate content and antioxidant parameters in the unpolished and polished seeds of three edible indica rice cultivars, namely Swarna (SW), the most popular indica rice cultivar in India and aromatic or scented cultivars Gobindobhog (GB) and Pusa Basmati (PB). While both the sucrose and starch content was the maximum in PB seeds (both unpolished and polished), the amylose content was the highest in SW polished seeds. SW polished seeds were superior as compared to GB and PB cultivars in terms of total antioxidant capacity, DPPH radical scavenging and Fe(II) chelation potential, as well as the highest lipoxygenase (LOX) inhibition or H2O2 scavenging potential, probably due to the maximum accumulation of total phenolics and flavonoids, the two important antioxidants. The reducing power ability was, however, identical in both SW and GB polished seeds. The PB polished seeds were more potent in superoxide and hydroxyl scavenging, whereas GB in nitric oxide (NO) scavenging. The common observation noted after polishing of seeds was the reduction in the level of carbohydrates and antioxidant potential, though the extent of reduction varied in the three cultivars. The only exception was GB, where there was no alteration in NO scavenging potential even after polishing. Our study showed the better performance of SW polished seeds with respect to higher amylose content and majority of the tested parameters governing antioxidant capacity and radical scavenging potential, thus highlighting the greater dietary significance of SW over the other two cultivars.

  4. The Effect of Season-Long Temperature Increases on Rice Cultivars Grown in the Central and Southern Regions of China

    Directory of Open Access Journals (Sweden)

    Zhiyuan Yang

    2017-11-01

    Full Text Available Rice production is challenged by the asymmetric increases in day and night temperatures. Efforts are required to improve our understanding of the impact of climate change on rice production. To this end, 2-year experiment was conducted to evaluate the response of mid-season rice growth in the central and southern regions of China to elevated temperatures. Four replicates of four widely planted indica rice cultivars (Huanghuazhan: HHZ; Shanyou63: SY63; Yangliangyou6: YLY6; Liangyoupeijiu: LYPJ were subjected to four elevated-temperature treatments (control: ambient temperature; NW: night-time warming; DW: daytime warming; AW: all-day warming generated by an open-top hot-blast system under field conditions. This apparatus causes an ~2°C increase in the rice canopy temperature. Of all the elevated-temperature treatments, AW was the most devastating treatment for all rice cultivars, negatively affecting nearly all of investigated parameters, including grain yield and its components, dry matter accumulation, biomass, and harvest index (HI. The AW treatment decreased the grain yield by 11–35% and 43–78% in 2015 and 2016, respectively. No significant reduction in the grain yield was observed in the DW and NW treatments in 2015. However, the grain yield was decreased in DW and NW treatments by 20–52% and 18–55%, respectively, in 2016. Furthermore, the temperature-driven degradation of pollen viability, the number of pollen grains adhering to the stigma and pollen germination on the stigma caused spikelet sterility and thereby decreased the grain yield. The YLY6 and SY63 cultivars performed better than the HHZ and LYPJ cultivars with respect to grain yield and its components in all elevated-temperature treatments in both years. However, 42.97 and 61.01% reductions still occurred for the SY63 and YLY6 cultivars, respectively, in the AW treatment in 2016. The above results suggested that the elevated temperature may cause a noteworthy reduction in

  5. Studies on the susceptibility of peas and field peas cultivars to Phoma medicaginis var. pinodella (Jones Boerema

    Directory of Open Access Journals (Sweden)

    Helena Furgał-Węgrzycka

    2013-12-01

    Full Text Available The aim of the work was to find the plants resistant to Phoma medicaginis var. pinodella causing leaf spot-pot of peas and field peas. Fourty five cultivars of peas and field peas and 6 breeding materials were tested in field in the period 1975-1978 on artificially inoculated field plots. Cultivars: Jubilat, Paloma, Proteus, Uladowskij Jubilejnyj, Fioletowa, Nieznanicka and Rosacrone were to be less susceptible. In laboratory and greenhouse conditions peas and field peas cultivars were examined for susceptible to pathotypes 3 and 5 of Phoma medicaginis var. pinodella. The results obtained proved that cultivars: Auralia, Finale, Flavanda, Jubilat, Paloma, Proteus, Uladowskij Jubilejnyj, Nieznanicka and Rosacrone were to be less susceptible to two pathotypes of P. medicaginis var. pinodella.

  6. Evaluation of indicators to determine black sigatoka susceptibility in five banana hybrid cultivars ( Mycosphaerella fijiensis Morelet

    Directory of Open Access Journals (Sweden)

    Reinaldo Pérez Armas

    2014-10-01

    Full Text Available This work had the objective of determining the variation of growth, development and yields indicators of five banana hybrid cultivars. The research was carried in the Agroindustrial Farm Marta Abreu, Cienfuegos, in a carbonated Brown soil. It was made a characterization of the soil and the climatic variables. A field experiment was developed with a design in blocks at random with four repetitions with five banana cultivars as treatments (‘FHIA-18’, ‘FHIA-02’, ‘FHIA-01’, ‘SH-3436 L-9’ and ‘FHIA-23’ . The plots had an area of 56 m2 with 16 plants, been evaluated eight for a total 32 plants for cultivar. The variable evaluated were the spotty youngest leaf, number of leaf by plant, incubation time (PI, evolution time of symptoms (TES and developing time of symptoms (TED, severity index (IS, active photosynthetic index (INHE and infection relative index. The cultivars FHIA-23 and SH 3436 L9 presented a hither time of development of the disease. In a general the more susceptible cultivar to the black Sigatoka under of the farm condition was FHIA-23. The clones FHIA-18, FHIA-01 and FHIA-02 presented the best behavior in the spotted youngest leaf and the number of leaf up to the flowering and the harvest time. The clones FHIA-01 and FHIA-18 have the better response to Black Sigatoka attending to the incubation period, the evolution time of the symptom and develo pment time of the disease

  7. Effects of salt and low light intensity during the vegetative stage on susceptibility of rice to male sterility induced by chilling stress during the reproductive stage

    Directory of Open Access Journals (Sweden)

    Takemasa Koumoto

    2016-10-01

    Full Text Available We tested whether exposing rice plants to abiotic stress (salt or shade during vegetative growth affects the chilling tolerance of reproductive organs, which is one of the most important traits for rice growing in a cool climate; we used two rice cultivars with different tolerance in two growing seasons. We divided the vegetative growth into three phases to clarify the most sensitive period: 7–22 days after transplanting (DAT, 23–38 DAT and 39–54 DAT. Chilling tolerance of the pre-stressed plants was based on the male sterility induced by low temperatures. Shade and salt stress during all three vegetative growth phases significantly reduced stomatal conductance. Shade decreased the specific leaf weight and the leaf sugar and starch contents, but salt had no significant effect, despite causing leaf damage. Low temperatures during the reproductive stage induced spikelet sterility in all plants, but the magnitude was greater in the salt- and shade-stressed plants of both cultivars, especially those stressed late during vegetative growth. The increased spikelet sterility caused by chilling was closely related to the reduction of the total spikelet number per panicle. This is the first study to show that salt and low light stress during vegetative growth increased the susceptibility of rice plants to chilling damage during panicle development.

  8. Impact of rice cultivar and organ on elemental composition of phytoliths and the release of bio-available silicon

    OpenAIRE

    Li, Zimin; Song, Zhaoliang; Cornelis, Jean-Thomas

    2014-01-01

    The continental bio-cycling of silicon (Si) plays a key role in global Si cycle and as such partly controls global carbon (C) budget through nutrition of marine and terrestrial biota, accumulation of phytolith-occluded organic carbon (PhytOC) and weathering of silicate minerals. Despite the key role of elemental composition of phytoliths on their solubility in soils, the impact of plant cultivar and organ on the elemental composition of phytoliths in Si high-accumulator plants, such as rice (...

  9. Effect of Nitrogen Fertilizer Rates on Morphological Traits, Yield and Yield Components of Three Cultivars of Rice

    Directory of Open Access Journals (Sweden)

    S. Gh Moosavi

    2015-07-01

    Full Text Available In order to study the effect of N fertilizer rates on morphological traits, yield and yield components of rice cultivars, a study was carried out in Rice Research Institute of Rasht, Iran during 2009. It was a two-variable factorial experiment based on a randomized complete block design with three replications. The first factor was nitrogen fertilization at four rates of 0, 30, 60 and 90 kg N ha-1 and the second factor was rice cultivar at three levels of Hashemi, Ali-Kazemi and Khazar. The results of analysis of variance showed that N fertilizer rates did not significantly affect on panicle length, grain number per panicle, 1000- grain weight and harvest index but significantly affected plant height, tiller number per m2, panicle number per m2, grain yield and biological yield. Means comparison showed that as N rate was increased from 0 to 90 kg ha-1, plant height, tiller number per m2, panicle number per m2, grain yield and biological yield increased by 12.7, 27.6, 32.6, 84.5 and 61.6%, respectively. The cultivar significantly affected morphological traits, panicle number per m2, grain number per panicle, 1000-grain weight, grain yield and biological yield. The results indicated that cultivar of Khazar had the highest potential of grain yield (3424.5 kg ha-1. In total, application of 90 kg N ha-1 and cultivar of Khazar treatment was better for having the maximum production under the conditions of the current study.

  10. Measurement of Methane Precursor Compounds in Soil Porewater of Two Rice Cultivars Under Conditions of Natural Suppression of Methanogenesis

    Science.gov (United States)

    Ulrick, M. L.; Bilek, R. S.

    2004-05-01

    Under identical growing conditions, rice cultivars have exhibited significantly different seasonal emissions of methane (CH4), a greenhouse gas. Previous work on cultivar differences has focused primarily on determining the extent to which each methanogenic pathway, fermentation of acetate and reduction of carbon dioxide, contribute to methane production in the sediment of flooded paddy fields. In this study, amino acid and organic acid precursor compounds of methanogenesis were measured in soil porewater samples collected six times throughout the growing season from greenhouse plots of Mars and Lemont cultivars of rice and an unplanted plot. Samples were obtained by suction withdrawal of porewater from hydrophilic porous polymer tubes, of 0.10 micron diameter pore size, which remained permanently installed in growing plots throughout the experiment at 3, 10, 17 and 24 cm depths below the soil-water interface. In addition to analyzing porewater for acetate, alanine, and propionate, concentrations of dissolved methane and carbon dioxide were also determined. For much of the season, methane production was naturally suppressed by the reduction of iron (III), Fe3+. Methane porewater concentrations of greater than 20 μ M were not observed until 68 days after the plots were flooded and spectrophotometric analysis showed [Fe3+] of > 2 μ M until that time. In the absence of significant methanogenesis, measurements of methane precursors in situ provide an estimate of differences in root exudates with cultivar type.

  11. Seasonal CH4 and N2O emissions and plant growth characteristics of several cultivars in direct seeded rice systems

    Science.gov (United States)

    Simmonds, M.; Anders, M. M.; Adviento-Borbe, M. A.; Van Kessel, C.; McClung, A.; Linquist, B.

    2014-12-01

    Understanding cultivar effects on field greenhouse gas (GHG) emissions in rice (Oryza sativa L.) systems is needed to improve the accuracy of predictive models used for estimating GHG emissions, and to determine to what extent choice of cultivar may have on GHG mitigation. We compared CH4 and N2O emissions, global warming potential (GWP = N2O + CH4), yield-scaled GWP (GWPY = GWP Mg-1 grain), and plant growth characteristics of 8 cultivars within 4 study sites in California and Arkansas. Seasonal CH4 emissions differed between cultivars by a factor of 2.1 and 1.3 at one California and one Arkansas site, respectively. Nitrous oxide emissions were negligible, comprised <10% of GWP, and were not different among cultivars. When sites and cultivars were pooled, and data were normalized to site averages, there was a positive correlation (r = 0.33) between root biomass at heading and seasonal CH4 emissions, but no correlation with shoot biomass at heading, or grain or straw biomass at maturity. Although differences in GWP and GWPY were observed, the consistency of some of the trends was variable across sites, indicating the importance of the genotype x environment interaction. While no high-yielding and low CH4-emitting cultivars were identified at the California sites, among the Southern varieties tested at the Arkansas site, the lowest emitting cultivar had the highest yield. This highlights the potential for breeding high-yielding varieties with low GWP, the ideal scenario to achieve low GWPY due to simultaneously mitigating GHG emissions and improving global food security.

  12. Enzyme expression in indica and japonica rice cultivars under saline stress=Expressão de enzimas em cultivares de arroz indica e japonica sob estresse salino

    Directory of Open Access Journals (Sweden)

    Cristina Rodrigues Mendes

    2012-10-01

    Full Text Available The southern State of Rio Grande do Sul (RS is the main rice producer in Brazil with a 60% participation of the national production and 86% participation of the region. Rice culture irrigation system is done by flooding, which leads to soil salinization, a major environmental constraint to production since it alters the plants’ metabolism exposed to this type of stress. The indica cultivar, widely used in RS, has a higher sensitivity to salinity when compared to that of the japonica cultivar in other physiological aspects. Current research analyzes enzymes expression involved in salt-subjected indica and japonica rice cultivars’ respiration. Oryza sativa L. spp. japonica S.Kato (BRS Bojuru, IAS 12-9 Formosa and Goyakuman and Oryza sativa L. spp. indica S. Kato (BRS Taim-7, BRS Atalanta and BRS Querencia were the cultivars employed. Seedlings were transferred to 15 L basins containing 50% Hoagland nutrient solution increased by 0, 25, 50, 75 and 100 mM NaCl, and collected at 14, 28 and 42 days after transfer (DAT. Plant tissues were macerated and placed in eppendorf tubes with Scandálios extractor solution. Electrophoresis was performed in 7% of the polyacrylamide gels in vertical vats. Bands were revealed for the following enzymes systems: esterase, alcohol dehydrogenase, phosphoglucoisomerase, malate dehydrogenase, malic enzyme and alpha amylase. The enzymes expression was greater in subspecies japonica, with more intense bands in proportion to salinity increase. Results show that enzyme systems are involved in the salinity defense mechanisms in O. sativa spp. japonica cultivar.O Estado do Rio Grande do Sul (RS destaca-se como principal produtor de arroz, participando com 60% da produção nacional e 86% da regional. O sistema de irrigação da cultura é por inundação, que induz o solo à salinização, um dos maiores limitadores ambientais à produção, alterando o metabolismo da plantas expostas a este tipo de estresse. As cultivares

  13. Silicon-mediated resistance in a susceptible rice variety to the rice leaf folder, Cnaphalocrocis medinalis Guenée (Lepidoptera: Pyralidae).

    Science.gov (United States)

    Han, Yongqiang; Lei, Wenbin; Wen, Lizhang; Hou, Maolin

    2015-01-01

    The rice leaf folder, Cnaphalocrocis medinalis (Guenée), is one of the most destructive rice pests in Asian countries. Rice varieties resistant to the rice leaf folder are generally characterized by high silicon content. In this study, silicon amendment, at 0.16 and 0.32 g Si/kg soil, enhanced resistance of a susceptible rice variety to the rice leaf folder. Silicon addition to rice plants at both the low and high rates significantly extended larval development and reduced larval survival rate and pupation rate in the rice leaf folder. When applied at the high rate, silicon amendment reduced third-instars' weight gain and pupal weight. Altogether, intrinsic rate of increase, finite rate of increase and net reproduction rate of the rice leaf folder population were all reduced at both the low and high silicon addition rates. Although the third instars consumed more in silicon-amended treatments, C:N ratio in rice leaves was significantly increased and food conversion efficiencies were reduced due to increased silicon concentration in rice leaves. Our results indicate that reduced food quality and food conversion efficiencies resulted from silicon addition account for the enhanced resistance in the susceptible rice variety to the rice leaf folder.

  14. Silicon-mediated resistance in a susceptible rice variety to the rice leaf folder, Cnaphalocrocis medinalis Guenée (Lepidoptera: Pyralidae.

    Directory of Open Access Journals (Sweden)

    Yongqiang Han

    Full Text Available The rice leaf folder, Cnaphalocrocis medinalis (Guenée, is one of the most destructive rice pests in Asian countries. Rice varieties resistant to the rice leaf folder are generally characterized by high silicon content. In this study, silicon amendment, at 0.16 and 0.32 g Si/kg soil, enhanced resistance of a susceptible rice variety to the rice leaf folder. Silicon addition to rice plants at both the low and high rates significantly extended larval development and reduced larval survival rate and pupation rate in the rice leaf folder. When applied at the high rate, silicon amendment reduced third-instars' weight gain and pupal weight. Altogether, intrinsic rate of increase, finite rate of increase and net reproduction rate of the rice leaf folder population were all reduced at both the low and high silicon addition rates. Although the third instars consumed more in silicon-amended treatments, C:N ratio in rice leaves was significantly increased and food conversion efficiencies were reduced due to increased silicon concentration in rice leaves. Our results indicate that reduced food quality and food conversion efficiencies resulted from silicon addition account for the enhanced resistance in the susceptible rice variety to the rice leaf folder.

  15. Effects of tire rubber ash and zinc sulfate on crop productivity and cadmium accumulation in five rice cultivars under field conditions.

    Science.gov (United States)

    Fahad, Shah; Hussain, Saddam; Khan, Fahad; Wu, Chao; Saud, Shah; Hassan, Shah; Ahmad, Naeem; Gang, Deng; Ullah, Abid; Huang, Jianliang

    2015-08-01

    Cadmium (Cd) is among the most widespread and toxic heavy metals becoming a severe threat to humans. A field study was conducted to examine the role of various zinc (Zn) fertilization treatments and cultivars on crop productivity and Zn and Cd concentrations in brown rice and rice straw. The Zn fertilization treatments included an unfertilized control, foliar applied Zn sulfate (ZnSO4) at panicle initiation stage, foliar applied ZnSO4 at milky stage, soil application of rubber ash, and soil-applied ZnSO4, while five rice cultivars were Swat-1, Shadab, Shua-92, Swat-2, and Sada Hayat. All the Zn fertilization treatments resulted in significantly higher number of panicles, number of spikelets per panicles, spikelet fertility, 1,000-grain weight, grain yield, brown rice and rice straw Zn concentrations, and significantly lower Cd concentrations. Soil application of rubber ash remained the best among all Zn fertilization treatments as it resulted in 73% higher grain yield and reduced Cd concentration by 51% as compared with control. Variations were also apparent among cultivars, and Shua-92 and Swat-2 performed better in terms of all studied attributes as compared with other cultivars. Conclusively, cultivar selection and Zn application are effective strategies to improve rice grain yield as well as quality. Rubber ash appeared a viable source of Zn having the ability to increase yield along with reducing Cd accumulation.

  16. Regulation of glutamine synthetase isoforms in two differentially drought-tolerant rice (Oryza sativa L.) cultivars under water deficit conditions.

    Science.gov (United States)

    Singh, Kamal Krishna; Ghosh, Shilpi

    2013-02-01

    KEY MESSAGE : The regulation of GS isoforms by WD was organ specific. Two GS isoforms i.e. OsGS1;1 and OsGS2 were differentially regulated in IR-64 (drought-sensitive) and Khitish (drought-tolerant) cultivars of rice. Water deficit (WD) has adverse effect on rice (Oryza sativa L.) and acclimation requires essential reactions of primary metabolism to continue. Rice plants utilize ammonium as major nitrogen source, which is assimilated into glutamine by the reaction of Glutamine synthetase (GS, EC 6.3.1.2). Rice plants possess one gene (OsGS2) for chloroplastic GS2 and three genes (OsGS1;1, OsGS1;2 and OsGS1;3) for cytosolic GS1. Here, we report the effect of WD on regulation of GS isoforms in drought-sensitive (cv. IR-64) and drought-tolerant (cv. Khitish) rice cultivars. Under WD, total GS activity in root and leaf decreased significantly in IR-64 seedlings in comparison to Khitish seedlings. The reduced GS activity in IR-64 leaf was mainly due to decrease in GS2 activity, which correlated with decrease in corresponding transcript and polypeptide contents. GS1 transcript and polypeptide accumulated in leaf during WD, however, GS1 activity was maintained at a constant level. Total GS activity in stem of both the varieties was insensitive to WD. Among GS1 genes, OsGS1;1 expression was differently regulated by WD in the two rice varieties. Its transcript accumulated more abundantly in IR-64 leaf than in Khitish leaf. Following WD, OsGS1;1 mRNA level in stem and root tissues declined in IR-64 and enhanced in Khitish. A steady OsGS1;2 expression patterns were noted in leaf, stem and root of both the cultivars. Results suggest that OsGS2 and OsGS1;1 expression may contribute to drought tolerance of Khitish cultivar under WD conditions.

  17. Caracterização morfológica de cultivares de arroz visando a certificação da pureza varietal Morphological characteristics of rice cultivars; application for variety purity certification

    Directory of Open Access Journals (Sweden)

    Sandro Bonow

    2007-06-01

    Full Text Available Com o presente trabalho, objetivou-se avaliar a eficiência dos descritores morfológicos, na caracterização de cultivares comerciais de arroz (Oryza sativa L., servindo como suporte às empresas produtoras de sementes na identificação de cultivares, assim como às exigências da Lei de Proteção de Cultivares. Foram caracterizadas as cultivares de arroz Carisma, IAC 202, Confiança, Douradão, Guarani, Primavera, Canastra e Caiapó. O estudo consistiu de dois experimentos, o primeiro conduzido em casa-de-vegetação, quando os genótipos foram caracterizados utilizando-se dos descritores morfológicos recomendados para o registro e proteção de cultivares. O segundo experimento foi conduzido em uma área de produção de sementes e consistiu na identificação, por parte de avaliadores, de variedades de arroz contaminantes propositalmente distribuídas junto às cultivares em estudo. Concluiu-se que os descritores morfológicos são úteis, porém, não suficientes para a caracterização e diferenciação de cultivares de arroz. As características morfológicas observadas em sementes e plantas após a antese são as mais adequadas para a caracterização e diferenciação de cultivares. Os genótipos de arroz de sequeiro apresentam grande similaridade morfológica.This study had the objective of evaluating the efficiency of morphological markers as descriptors for commercial rice cultivars (Oryza sativa L. to be used in cultivar identification by seed companies, as well as, to fulfill the requirements for cultivar protection law. The studied cultivars were: Confiança, IAC 202, Carisma, Primavera, Guarani, Douradão, Canastra, and Caiapó. This study consisted of two experiments: one, conducted in greenhouse, where the varieties were characterized based on morphological descriptors recommended by protection cultivar law; the other, done in a seed production field that consisted in identification of rice contaminant varieties distributed

  18. Selective sweep with significant positive selection serves as the driving force for the differentiation of japonica and indica rice cultivars.

    Science.gov (United States)

    Yuan, Yang; Zhang, Qijun; Zeng, Shuiyun; Gu, Longjiang; Si, Weina; Zhang, Xiaohui; Tian, Dacheng; Yang, Sihai; Wang, Long

    2017-04-19

    Asian cultivated rice (Oryza sativa L.), including japonica and indica, is unarguable the most important crop in Asia as well as worldwide. However, a decisive conclusion of its origination and domestication processes are still lacking. Nowadays, the ever-increasing high-throughput sequencing data of numerous rice samples have provided us new opportunities to get close to the answer of these questions. By compiling 296 whole-genome sequenced rice cultivars and 39 diverse wild rice, two types of domesticated regions (DR-I and DR-II) with strong selective sweep signals between different groups were detected. DR-I regions included 28 blocks which significantly differentiated between japonica and indica subspecies, while DR-II regions were consisted of another 28 blocks which significantly differentiated between wild and cultivated rice, each covered 890 kb and 640 kb, respectively. In-depth analysis suggested that both DR-Is and DR-IIs could have originated from Indo-China Peninsula to southern China, and DR-IIs might be introgressed from indica to japonica. Functional bias with significant positive selection has also been detected in the genes of DR-I, suggesting important role of the selective sweep in differentiation of japonica and indica. This research promoted a new possible model of the origin of the cultivated rice that DR-Is in japonica and indica maybe independently originated from the divergent wild rice in the Indo-China Peninsula to southern China, and then followed by frequent introgression. Genes with significant positive selection and biased functions were also detected which could play important roles in rice domestication and differentiation processes.

  19. Impact of rice cultivar and organ on elemental composition of phytoliths and the release of bio-available silicon

    Directory of Open Access Journals (Sweden)

    Zimin eLi

    2014-10-01

    Full Text Available The continental bio-cycling of silicon (Si plays a key role in global Si cycle and as such partly controls global carbon (C budget through nutrition of marine and terrestrial biota, accumulation of phytolith-occluded organic carbon (PhytOC and weathering of silicate minerals. Despite the key role of elemental composition of phytoliths on their solubility in soils, the impact of plant cultivar and organ on the elemental composition of phytoliths in Si high-accumulator plants, such as rice (Oryza sativa is not yet fully understood. Here we show that rice cultivar significantly impacts the elemental composition of phytoliths (Si, Al, Fe and C in different organs of the shoot system (grains, sheath, leaf and stem. The amount of occluded OC within phytoliths is affected by contents of Si, Al and Fe in plants, while independent of the element composition of phytoliths. Our data document, for different cultivars, higher bio-available Si release from phytoliths of leaves and sheaths, which are characterized by higher enrichment with Al and Fe (i.e., lower Si/Al and Si/Fe ratios, compared to grains and stems. We indicate that phytolith solubility in soils may be controlled by rice cultivar and type of organs. Our results highlight that the role of the morphology, the hydration rate and the chemical composition in the solubility of phytoliths and the kinetic release of Si in soil solution needs to be studied further. This is central to a better understanding of the impact of soil amendment with different plant organs and cultivars on soil OC stock and on the delivery of dissolved Si as we show that sheath and leaf rice organs are both characterized by higher content of OC occluded in phytolith and higher phytolith solubility compared to grains and stems. Our study shows the importance of studying the impact of the agro-management on the evolution of sinks and sources of Si and C in soils used for Si-high accumulator plants.

  20. Impact of rice cultivar and organ on elemental composition of phytoliths and the release of bio-available silicon.

    Science.gov (United States)

    Li, Zimin; Song, Zhaoliang; Cornelis, Jean-Thomas

    2014-01-01

    The continental bio-cycling of silicon (Si) plays a key role in global Si cycle and as such partly controls global carbon (C) budget through nutrition of marine and terrestrial biota, accumulation of phytolith-occluded organic carbon (PhytOC) and weathering of silicate minerals. Despite the key role of elemental composition of phytoliths on their solubility in soils, the impact of plant cultivar and organ on the elemental composition of phytoliths in Si high-accumulator plants, such as rice (Oryza sativa) is not yet fully understood. Here we show that rice cultivar significantly impacts the elemental composition of phytoliths (Si, Al, Fe, and C) in different organs of the shoot system (grains, sheath, leaf and stem). The amount of occluded OC within phytoliths is affected by contents of Si, Al, and Fe in plants, while independent of the element composition of phytoliths. Our data document, for different cultivars, higher bio-available Si release from phytoliths of leaves and sheaths, which are characterized by higher enrichment with Al and Fe (i.e., lower Si/Al and Si/Fe ratios), compared to grains and stems. We indicate that phytolith solubility in soils may be controlled by rice cultivar and type of organs. Our results highlight that the role of the morphology, the hydration rate and the chemical composition in the solubility of phytoliths and the kinetic release of Si in soil solution needs to be studied further. This is central to a better understanding of the impact of soil amendment with different plant organs and cultivars on soil OC stock and on the delivery of dissolved Si as we show that sheath and leaf rice organs are both characterized by higher content of OC occluded in phytolith and higher phytolith solubility compared to grains and stems. Our study shows the importance of studying the impact of the agro-management on the evolution of sinks and sources of Si and C in soils used for Si-high accumulator plants.

  1. Comparative Proteomic Analysis of Susceptible and Resistant Rice Plants during Early Infestation by Small Brown Planthopper.

    Science.gov (United States)

    Dong, Yan; Fang, Xianping; Yang, Yong; Xue, Gang-Ping; Chen, Xian; Zhang, Weilin; Wang, Xuming; Yu, Chulang; Zhou, Jie; Mei, Qiong; Fang, Wang; Yan, Chengqi; Chen, Jianping

    2017-01-01

    The small brown planthopper (Laodelphax striatellus Fallén, Homoptera, Delphacidae-SBPH) is one of the major destructive pests of rice (Oryza sativa L.). Understanding on how rice responds to SBPH infestation will contribute to developing strategies for SBPH control. However, the response of rice plant to SBPH is poorly understood. In this study, two contrasting rice genotypes, Pf9279-4 (SBPH-resistant) and 02428 (SBPH-susceptible), were used for comparative analysis of protein profiles in the leaf sheath of rice plants in responses to SBPH infestation. One hundred and thirty-two protein spots that were differentially expressed between the resistant and susceptible rice lines were identified with significant intensity differences (≥2-fold, P < 0.05) at 0, 6, and 12 h after SBPH infestation. Protein expression profile analysis in the leaf sheath of SBPH-resistant and SBPH-susceptible rice lines after SBPH infestation showed that proteins induced by SBPH feeding were involved mainly in stress response, photosynthesis, protein metabolic process, carbohydrate metabolic process, energy metabolism, cell wall-related proteins, amino acid metabolism and transcriptional regulation. Gene expression analysis of 24 differentially expressed proteins (DEPs) showed that more than 50% DEPs were positively correlated with their mRNA levels. Analysis of some physiological indexes mainly involved in the removal of oxygen reactive species showed that the levels of superoxide dismutase (SOD) and glutathione (GSH) were considerably higher in Pf9279-4 than 02428 during SBPH infestation. The catalase (CAT) activity and hydroxyl radical inhibition were lower in Pf9279-4 than 02428. Analysis of enzyme activities indicates that Pf9279-4 rice plants defend against SBPH through the activation of the pathway of the salicylic acid (SA)-dependent systemic acquired resistance. In conclusion, this study provides some insights into the molecular networks involved on cellular and physiological

  2. Comparative Proteomic Analysis of Susceptible and Resistant Rice Plants during Early Infestation by Small Brown Planthopper

    Directory of Open Access Journals (Sweden)

    Yan Dong

    2017-10-01

    Full Text Available The small brown planthopper (Laodelphax striatellus Fallén, Homoptera, Delphacidae-SBPH is one of the major destructive pests of rice (Oryza sativa L.. Understanding on how rice responds to SBPH infestation will contribute to developing strategies for SBPH control. However, the response of rice plant to SBPH is poorly understood. In this study, two contrasting rice genotypes, Pf9279-4 (SBPH-resistant and 02428 (SBPH-susceptible, were used for comparative analysis of protein profiles in the leaf sheath of rice plants in responses to SBPH infestation. One hundred and thirty-two protein spots that were differentially expressed between the resistant and susceptible rice lines were identified with significant intensity differences (≥2-fold, P < 0.05 at 0, 6, and 12 h after SBPH infestation. Protein expression profile analysis in the leaf sheath of SBPH-resistant and SBPH-susceptible rice lines after SBPH infestation showed that proteins induced by SBPH feeding were involved mainly in stress response, photosynthesis, protein metabolic process, carbohydrate metabolic process, energy metabolism, cell wall-related proteins, amino acid metabolism and transcriptional regulation. Gene expression analysis of 24 differentially expressed proteins (DEPs showed that more than 50% DEPs were positively correlated with their mRNA levels. Analysis of some physiological indexes mainly involved in the removal of oxygen reactive species showed that the levels of superoxide dismutase (SOD and glutathione (GSH were considerably higher in Pf9279-4 than 02428 during SBPH infestation. The catalase (CAT activity and hydroxyl radical inhibition were lower in Pf9279-4 than 02428. Analysis of enzyme activities indicates that Pf9279-4 rice plants defend against SBPH through the activation of the pathway of the salicylic acid (SA-dependent systemic acquired resistance. In conclusion, this study provides some insights into the molecular networks involved on cellular and

  3. Previous Crop and Cultivar Effects on Methane Emissions from Drill-Seeded, Delayed-Flood Rice Grown on a Clay Soil

    Directory of Open Access Journals (Sweden)

    Alden D. Smartt

    2016-01-01

    Full Text Available Due to anaerobic conditions that develop in soils under flooded-rice (Oryza sativa L. production, along with the global extent of rice production, it is estimated that rice cultivation is responsible for 11% of global anthropogenic methane (CH4 emissions. In order to adequately estimate CH4 emissions, it is important to include data representing the range of environmental, climatic, and cultural factors occurring in rice production, particularly from Arkansas, the leading rice-producing state in the US, and from clay soils. The objective of this study was to determine the effects of previous crop (i.e., rice or soybean (Glycine max L. and cultivar (i.e., Cheniere (pure-line, semidwarf, CLXL745 (hybrid, and Taggart (pure-line, standard-stature on CH4 fluxes and emissions from rice grown on a Sharkey clay (very-fine, smectitic, thermic Chromic Epiaquerts in eastern Arkansas. Rice following rice as a previous crop generally had greater (p<0.01 fluxes than rice following soybean, resulting in growing season emissions (p<0.01 of 19.6 and 7.0 kg CH4-C ha−1, respectively. The resulting emissions from CLXL745 (10.2 kg CH4-C ha−1 were less (p=0.03 than those from Cheniere or Taggart (15.5 and 14.2 kg CH4-C ha−1, resp., which did not differ. Results of this study indicate that common Arkansas practices, such as growing rice in rotation with soybean and planting hybrid cultivars, may result in reduced CH4 emissions relative to continuous rice rotations and pure-line cultivars, respectively.

  4. Cultivars

    Directory of Open Access Journals (Sweden)

    Oleg Blum

    2011-01-01

    Full Text Available Some modern agrochemicals with antioxidant potential were tested for their protective effect against ozone injury using clover and tobacco ozone-sensitive cultivars as model plants subjected to ambient ozone at two sites (Kyiv city in Ukraine and Szarów village in Poland. All used agrochemicals showed partial protective effects against ozone injury on clover and tobacco. Conducted studies confirmed the effectiveness of modern fungicides belonging to strobilurin group as protectants of sensitive crops against ozone damage. The effectiveness of new growth regulators “Emistym C” and “Agrostymulin” was showed for the first time. Out of the studied agrochemicals, fungicide “Strobi” and natural growth regulator “Emistym C” demonstrated the best protective effects. These agrochemicals present promise for further studies of their possible utilization for enhancement of ozone tolerance of sensitive crops.

  5. Manejo da irrigação em cultivares de arroz no sistema pré-germinado Irrigation management in rice cultivars in the pre-geminated system

    Directory of Open Access Journals (Sweden)

    Enio Marchezan

    2007-02-01

    Full Text Available No sistema pré-germinado de cultivo de arroz, a área é inundada antes da semeadura e, cerca de três dias após, promove-se a drenagem inicial para favorecer o estabelecimento das plântulas, ocasionando a perda de água e de nutrientes. Assim, testaram três manejos de irrigação: [M1], retirada da água três dias após a semeadura; [M2], retirada de água aos 30 dias após a semeadura e [M3], sem retirada de água, associados a cultivares de arroz, com o objetivo de avaliar a produtividade do arroz e a perda de nutrientes via água de drenagem. Os manejos testados não influenciaram os parâmetros avaliados na cultura do arroz. Para a produtividade, os valores oscilaram conforme as características de cada ano, obtendo-se médias de 5.100, 9.565 e 7.078kg ha-1 para as safras 2002/03, 2003/04 e 2004/05, respectivamente. Apenas em 2003/04, as cultivares diferiram em produtividade. Nas safras 2002/03 e 2003/04, as perdas de fósforo foram semelhantes entre os tratamentos, mas, em 2004/05, ocorreram maiores perdas quando a água foi retirada aos três dias após a semeadura. Para potássio, as maiores concentrações também foram observadas nas amostras de água coletadas aos três dias após a semeadura. Os resultados indicam que deve-se manter lâmina contínua, pois este manejo proporciona a preservação dos nutrientes dentro da lavoura, não afeta a produtividade e reduz o impacto ambiental nos mananciais hídricos.In the pre-germinate system, the rice field is flooded before sowing and about three days later, the initial drainage takeplace in order to promote the plants initial growth but there occurs loss of nutrients and water. Then, three irrigation managements have been evaluated: water removal three days after sowing, water removal 30 days after sowing and without water removal, associating three rice cultivars with the objective to measuring rice grains yield, and loos nutrients with water removal. The water managements evaluated

  6. Xanthomonas albilineans(Ashby Dowson: cultivars susceptibility and effects in the sugar yield

    Directory of Open Access Journals (Sweden)

    Yosel Pérez Pérez

    2017-01-01

    Full Text Available The effects produced by the Xanthomonas albilineans (Ashby Dowson on stalks with acute symptoms of the disease have been addressed by different authors, however, is unknown the effects that may occur in seropositive asymptomatic stems to the bacteria. This work has as objective to study the impact of the presence of bacteria in the colonized tissues, as well as the relationship between the concentration of cells and the expression of symptoms. In 900 stems of 14 cultivars detected the bacteria by serology and identified the variables Brix of stem with handheld refractometer, as well as the contents of fructose, glucose and sucrose whit High Performance Liquid Chromatographic. The presence of the bacterium X. albilineans in asymptomatic stems affects the sugar content of the same, which constitutes a contribution to the knowledge of the pathogen - host relations for this disease. The stems are colonized by the bacteria, but the amount of UFC/g of tissue or per ml/juice does not mean that a cultivar is more or less susceptible. In stalks with symptoms the cell density increases toward the foliage, while that in the asymptomatic happens to the contrary.

  7. Assessment of peanut quality and compositional characteristics among transgenic sclerotinia blight-resistant and non-transgenic susceptible cultivars.

    Science.gov (United States)

    Hu, Jiahuai; Telenko, Darcy E P; Phipps, Patrick M; Grabau, Elizabeth A

    2014-08-06

    This study presents the results of a comparison that includes an analysis of variance and a canonical discriminant analysis to determine compositional equivalence and similarity between transgenic, sclerotinia blight-resistant and non-transgenic, susceptible cultivars of peanut in 3 years of field trials. Three Virginia-type cultivars (NC 7, Wilson, and Perry) and their corresponding transgenic lines (N70, W73, and P39) with a barley oxalate oxidase gene were analyzed for differences in key mineral nutrients, fatty acid components, hay constituents, and grade characteristics. Results from both analyses demonstrated that transgenic lines were compositionally similar to their non-transgenic parent cultivar in all factors as well as market-grade characteristics and nutritional value. Transgenic lines expressing oxalate oxidase for resistance to sclerotinia blight were substantially equivalent to their non-transgenic parent cultivar in quality and compositional characteristics.

  8. Physicochemical, cooking, and textural characteristics of grains of different rice (Oryza sativa L.) cultivars of temperate region of India and their interrelationships.

    Science.gov (United States)

    Bhat, Farhan M; Riar, Charanjit S

    2017-04-01

    The aim of the study was to explore the physiochemical, cooking, and textural characteristics of 12 traditional rice cultivars grown in Kashmir (India) and develop their interrelationship. The results revealed a significant variation (p ≤ .05) among the different characteristics analyzed on the basis of characteristics evaluated for each cultivar. The novel attributes depicted by these cultivars as reflected includes their higher kernel elongation during cooking, lowest solids in gruel loss and lower adhesiveness together with desirable hardness which can fetches their increasing demand commercially besides having lacerative palatability. Pearson correlation and principal component analysis was carried out to elucidate the relationship among physicochemical, cooking, and textural characteristics as analyzed in the experimental study. The physicochemical characteristics such as gelatinization temperature, gel consistency, amylose, and amylopectin showed a significant correlation (positively or negatively) with the cooking and textural characteristics (water uptake ratio, kernel elongation during cooking, elongation ratio, solids in gruel loss, volume expansion ratio, optimum cooking time, hardness, and adhesiveness) with resulting in the selection of desired varieties having improved eating characteristics. The desirable characteristics depicted by these cultivars exploit the agriculturists/institutions to preserve these races and enhance the farmers to cultivate all these cherished rice cultivars. There is increasing demand for rice varieties with excellent quality characteristics throughout the world. It has been observed that the traditional rice cultivars are of immense health benefits which lead to their increasing surge among consumers. Cooking and eating quality (mouth feel characteristics) of rice has a major role in determining its economic value and consumer acceptability. The cultivars explored in this study include traditional pigmented rice

  9. Susceptibility of low-chill blueberry cultivars to Mediterranean fruit fly, oriental fruit fly, and melon fly (Diptera: Tephritidae).

    Science.gov (United States)

    Follett, Peter A; Zee, Francis T; Hamasaki, Randall T; Hummer, Kim; Nakamoto, Stuart T

    2011-04-01

    No-choice tests were conducted to determine whether fruit of southern highbush blueberry, Vaccinium corymbosum L., hybrids are hosts for three invasive tephritid fruit flies in Hawaii. Fruit of various blueberry cultivars was exposed to gravid female flies of Bactrocera dorsalis Hendel (oriental fruit fly), Ceratitis capitata (Wiedemann) (Mediterranean fruit fly), or Bactrocera cucurbitae Coquillet (melon fly) in screen cages outdoors for 6 h and then held on sand in the laboratory for 2 wk for pupal development and adult emergence. Each of the 15 blueberry cultivars tested were infested by oriental fruit fly and Mediterranean fruit fly, confirming that these fruit flies will oviposit on blueberry fruit and that blueberry is a suitable host for fly development. However, there was significant cultivar variation in susceptibility to fruit fly infestation. For oriental fruit fly, 'Sapphire' fruit produced an average of 1.42 puparia per g, twice as high as that of the next most susceptible cultivar 'Emerald' (0.70 puparia per g). 'Legacy', 'Biloxi', and 'Spring High' were least susceptible to infestation, producing only 0.20-0.25 oriental fruit fly puparia per g of fruit. For Mediterranean fruit fly, 'Blue Crisp' produced 0.50 puparia per g of fruit, whereas 'Sharpblue' produced only 0.03 puparia per g of fruit. Blueberry was a marginal host for melon fly. This information will aid in development of pest management recommendations for blueberry cultivars as planting of low-chill cultivars expands to areas with subtropical and tropical fruit flies. Planting of fruit fly resistant cultivars may result in lower infestation levels and less crop loss.

  10. Cluster analysis of lowland and upland rice cultivars based on grain quality attributes

    Science.gov (United States)

    Rice is cropped in many countries all over the world and plays an important role in human nutrition as well as in agricultural economics, besides its social importance. Embrapa Rice and Beans is responsible for national rice enhancement programs and is conducting breeding projects to increase yield ...

  11. Economics of weed suppressive rice cultivars in flood- and furrow-irrigated systems

    Science.gov (United States)

    Weeds are a major constraint to rice production. In the U.S, weeds in rice are controlled primarily with synthetic herbicides. Intensive herbicide application in rice also has many potential drawbacks, resulting in environmental pollution, human health concerns, and development of weed resistance. B...

  12. Cadmium accumulation retard activity of functional components of photo assimilation and growth of rice cultivars amended with vermicompost.

    Science.gov (United States)

    Sebastian, Abin; Prasad, M N V

    2013-01-01

    Cadmium (Cd) uptake mediated alterations in functional components of photo assimilation during conversion of cow dung and poultry cast to vermicompost were studied in two Indian rice cultivars; MO 16 and MTU 7029. It was found that higher amount of Cd accumulate in plants grown in soil amended with vermicompost which in turn damaged functional components in photo assimilation. Enhancement of root growth was recognized as reason for Cd accumulation. Metabolic alterations noticed among plants were not taken place during application of raw materials used for vermicomposting such as cow dung and poultry cast amendment. Rice varieties accumulated Cd differentially where MTU 7029 accumulated more Cd compare to MO 16. It was also noticed that existence of negative correlation between zinc status of the plant and Cd accumulation.

  13. Bioengineered 'golden' indica rice cultivars with beta-carotene metabolism in the endosperm with hygromycin and mannose selection systems.

    Science.gov (United States)

    Datta, Karabi; Baisakh, Niranjan; Oliva, Norman; Torrizo, Lina; Abrigo, Editha; Tan, Jing; Rai, Mayank; Rehana, Sayda; Al-Babili, Salim; Beyer, Peter; Potrykus, Ingo; Datta, Swapan K

    2003-03-01

    Vitamin-A deficiency (VAD) is a major malnutrition problem in South Asia, where indica rice is the staple food. Indica-type rice varieties feed more than 2 billion people. Hence, we introduced a combination of transgenes using the biolistic system of transformation enabling biosynthesis of provitamin A in the endosperm of several indica rice cultivars adapted to diverse ecosystems of different countries. The rice seed-specific glutelin promoter (Gt-1 P) was used to drive the expression of phytoene synthase (psy), while lycopene beta-cyclase (lcy) and phytoene desaturase (crtI), fused to the transit peptide sequence of the pea-Rubisco small subunit, were driven by the constitutive cauliflower mosaic virus promoter (CaMV35S P). Transgenic plants were recovered through selection with either CaMV35S P driven hph (hygromycin phosphotransferase) gene or cestrum yellow leaf curling virus promoter (CMP) driven pmi (phophomannose isomerase) gene. Molecular and biochemical analyses demonstrated stable integration and expression of the transgenes. The yellow colour of the polished rice grain evidenced the carotenoid accumulation in the endosperm. The colour intensity correlated with the estimated carotenoid content by spectrophotometric and HPLC analysis. Carotenoid level in cooked polished seeds was comparable (with minor loss of xanthophylls) to that in non-cooked seeds of the same transgenic line. The variable segregation pattern in T1 selfing generation indicated single to multiple loci insertion of the transgenes in the genome. This is the first report of using nonantibiotic pmi driven by a novel promoter in generating transgenic indica rice for possible future use in human nutrition.

  14. Determining crop coefficient of Binam and Khazar cultivars of rice by lysimeter and controlled basins in Rasht region

    Directory of Open Access Journals (Sweden)

    H. Pouryazdankhah

    2016-05-01

    Full Text Available Estimating and determining of rice water requirement, being the main cultivate of Rasht region, is crucial for devoting water to this region. Equations which are used to calculate the reference evapotranspiration (ET0 are not match to all climatic conditions, due to their empirical bases. So, it is necessary to clarify proper methods for each region. Crop coefficient (Kc is also the main parameter for determining each plant’s potential evapotranspiration and subsequently plant water requirement. Hence in this study, evapotranspiration data for grass and rice i.e. Binam and Khazar cultivars were collected in Rice Research Institute of Rash, by using drainable lysimeter at ten-day periods during three consecutive crop seasons. The reference evapotranspiration were calculated and compared with 16 empirical equations results included in Ref-ET software. Significant differences of them have been evaluated using SPSS software. Also, the crop coefficient values were calculated for each variety of rice. In all three equations i.e. Hargreaves, Priestley-Taylor and Penman (FAO 24 have not shown any significant differences. Among three methods, Hargreaves equation is recommended for Rasht region because, this equation as compared with others is a temperature-based method and would consider global warming phenomenon. Also, the average of crop coefficient (Kc for Khazar and Binam in three consecutive crop seasons were 1.10 and 1.09, respectively.

  15. Jasmonic acid-mediated defense suppresses brassinosteroid-mediated susceptibility to Rice black streaked dwarf virus infection in rice.

    Science.gov (United States)

    He, Yuqing; Zhang, Hehong; Sun, Zongtao; Li, Junmin; Hong, Gaojie; Zhu, Qisong; Zhou, Xuebiao; MacFarlane, Stuart; Yan, Fei; Chen, Jianping

    2017-04-01

    Plant hormones play a vital role in plant immune responses. However, in contrast to the relative wealth of information on hormone-mediated immunity in dicot plants, little information is available on monocot-virus defense systems. We used a high-throughput-sequencing approach to compare the global gene expression of Rice black-streaked dwarf virus (RBSDV)-infected rice plants with that of healthy plants. Exogenous hormone applications and transgenic rice were used to test RBSDV infectivity and pathogenicity. Our results revealed that the jasmonic acid (JA) pathway was induced while the brassinosteroid (BR) pathway was suppressed in infected plants. Foliar application of methyl jasmonate (MeJA) or brassinazole (BRZ) resulted in a significant reduction in RBSDV incidence, while epibrassinolide (BL) treatment increased RBSDV infection. Infection studies using coi1-13 and Go mutants demonstrated JA-mediated resistance and BR-mediated susceptibility to RBSDV infection. A mixture of MeJA and BL treatment resulted in a significant reduction in RBSDV infection compared with a single BL treatment. MeJA application efficiently suppressed the expression of BR pathway genes, and this inhibition depended on the JA coreceptor OsCOI1. Collectively, our results reveal that JA-mediated defense can suppress the BR-mediated susceptibility to RBSDV infection. © 2016 The Authors. New Phytologist © 2016 New Phytologist Trust.

  16. Teores de proteína, óleo, lisina e triptofano em grãos integrais de diversos cultivares de arroz Oil, protein, lysine, and triptophan content of some rice cultivars

    Directory of Open Access Journals (Sweden)

    J. P. F. Teixeira

    1976-07-01

    Full Text Available Tendo em vista futuros programas de melhoramento da qualidade nutritiva do arroz, foram determinados os teores de óleo, proteína e dos aminoácidos essenciais lisina e triptofano nos grãos descascados dos principais cultivares desse cereal cultivados no Estado de São Paulo. Foram encontradas diferenças estatisticamente significativas entre os teores desses constituintes, nos diferentes cultivares estudados. A interação variedade-ambiente teve efeito marcante nos teores de proteína dos grãos, com exceção do IAC-47. De uma maneira geral, os teores de lisina e de triptofano foram mais elevados nos materiais que apresentaram teores mais baixos de proteína. Dentre os principais cultivares de arroz atualmente em plantio, o IAC-47 apresentou características promissoras para futuros programas de melhoramento visando melhoria da qualidade nutricional desse cereal.The purpose of this study was to determine the content of oil, protein, lysine, and triptophan of 12 rice cultivars of the State of São Paulo. These data are of large interest as a support for the future rice breeding program in order to improve the nutritional value of this cereal. Significant differences were found for all the characteristics caused by vari-etal effects. Environmental factors, such as the year and the location where the rice grew, severely affected the protein content of all the cultivars, but for the IAC-47. In general, the low protein cultivars showed higher levels of lysine and triptophan. The IAC-47 cultivar revealed the most stable chemical composition and very promising to be used in the breeding for high-protein rices.

  17. Soil amendments and cultivar selection can improve rice yield in salt-influenced (tsunami-affected) paddy fields in Sri Lanka.

    Science.gov (United States)

    Reichenauer, Thomas G; Panamulla, Sunil; Subasinghe, Siripala; Wimmer, Bernhard

    2009-10-01

    The tsunami disaster in the Indian Ocean in December 2004 caused devastation of agricultural soils by salt water over wide areas. Many rice fields located close to the coast were affected by the flood of seawater. Electric conductivity (EC) of soils in tsunami-affected rice fields was found to be higher compared to unaffected fields 2 years after the tsunami. Four soil amendments (gypsum, dolomite, cinnamon ash and rice-husk-charcoal) were tested for their influence on improving the yield parameters of rice grown in a tsunami-affected and a non-affected area. Yield parameters were compared with an untreated control of the same cultivar (AT362) and with a salt resistant rice variety (AT354). The salt resistant variety had the highest grain yield. The two amendments gypsum and rice-husk-charcoal led to an increase in grain yield compared to the untreated control, whereas dolomite and cinnamon ash had no significant effect on grain yield.

  18. Colonization of resistant and susceptible lettuce cultivars by a green fluorescent protein-tagged isolate of Verticillium dahliae.

    Science.gov (United States)

    Vallad, G E; Subbarao, K V

    2008-08-01

    Interactions between lettuce and a green fluorescent protein (GFP)-expressing, race 1 isolate of Verticillium dahliae, were studied to determine infection and colonization of lettuce cultivars resistant and susceptible to Verticillium wilt. The roots of lettuce seedlings were inoculated with a conidial suspension of the GFP-expressing isolate. Colonization was studied with the aid of laser scanning confocal and epi-fluorescence microscopes. Few differences in the initial infection and colonization of lateral roots were observed between resistant and susceptible cultivars. Hyphal colonies formed on root tips and within the root elongation zones by 5 days, leading to the colonization of cortical tissues and penetration of vascular elements regardless of the lettuce cultivar by 2 weeks. By 8 to 10 weeks after inoculation, vascular discoloration developed within the taproot and crown regions of susceptible cultivars well in advance of V. dahliae colonization. Actual foliar wilt coincided with the colonization of the taproot and crown areas and the eruption of mycelia into surrounding cortical tissues. Advance colonization of stems, pedicels, and inflorescence, including developing capitula and mature achenes was observed. Seedborne infection was limited to the maternal tissues of the achene, including the pappus, pericarp, integument, and endosperm; but the embryo was never compromised. Resistant lettuce cultivars remained free of disease symptoms. Furthermore, V. dahliae colonization never progressed beyond infected lateral roots of resistant cultivars. Results indicated that resistance in lettuce may lie with the plant's ability to shed infected lateral roots or to inhibit the systemic progress of the fungus through vascular tissues into the taproot.

  19. Susceptibility of Seven Selected Tomato Cultivars to Tuta absoluta (Lepidoptera: Gelechiidae): Implications for Its Management.

    Science.gov (United States)

    Ghaderi, Saeedeh; Fathipour, Yaghoub; Asgari, Shahriar

    2017-04-01

    Tuta absoluta (Meyrick) (Lepidoptera: Gelechiidae) is a serious pest originating from South America that affects tomato production in many countries, particularly in Iran (since 2010). In this study, by using age-stage, two-sex life-table parameters, the resistance of seven tomato cultivars, namely, 'Primo Early', 'Rio Grande', 'Cal JN3', 'Petomech', 'Early Urbana Y', 'Super 2270', and 'Super Strain B' to T. absoluta, was evaluated under laboratory conditions (25 ± 1 °C, 60 ± 5% RH, and a photoperiod of 16:8 (L:D) h). Larval and pupal periods were longest on Early Urbana Y, 13.86 and 6.52 d, respectively, and shortest on Cal JN3, 10.92 and 5.5 d, respectively. The longest and shortest development times of immature stages lasted 26.42 and 20.83 d on Early Urbana Y and Cal JN3, respectively. Male and female adult longevity was longest on Early Urbana Y, 30.42 and 38.52 d, respectively, and shortest on Cal JN3, 11.67 and 18.8 d, respectively. The net reproductive rate (R0) ranged between 80.94 (Cal JN3) and 45.87 (Primo Early) offspring. The lowest and the highest values of the intrinsic rate of increase (r) and finite rate of increase (λ) were on Early Urbana Y and Cal JN3, 0.1052 and 0.1522 and 1.1109 and 1.1644 d-1, respectively. The mean generation time (T) on different cultivars varied from 30.47 to 37.28 d. Our results indicated that Cal JN3 was the most susceptible to infestation and Primo Early and Early Urbana Y were the most resistant to T. absoluta among the tomato cultivars tested. © The Authors 2017. Published by Oxford University Press on behalf of Entomological Society of America. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

  20. Genome-wide identification and analysis of Japonica and Indica cultivar-preferred transcripts in rice using 983 Affymetrix array data.

    Science.gov (United States)

    Jung, Ki-Hong; Gho, Hyun-Jung; Giong, Hoi-Khoanh; Chandran, Anil Kumar Nalini; Nguyen, Quynh-Nga; Choi, Heebak; Zhang, Tian; Wang, Wen; Kim, Jin-Hyun; Choi, Hong-Kyu; An, Gynheung

    2013-08-10

    Accumulation of genome-wide transcriptome data provides new insight on a genomic scale which cannot be gained by analyses of individual data. The majority of rice (O. sativa) species are japonica and indica cultivars. Genome-wide identification of genes differentially expressed between japonica and indica cultivars will be very useful in understanding the domestication and evolution of rice species. In this study, we analyzed 983 of the 1866 entries in the Affymetrix array data in the public database: 595 generated from indica and 388 from japonica rice cultivars. To discover differentially expressed genes in each cultivar, we performed significance analysis of microarrays for normalized data, and identified 490 genes preferentially expressed in japonica and 104 genes in indica. Gene Ontology analyses revealed that defense response-related genes are significantly enriched in both cultivars, indicating that japonica and indica might be under strong selection pressure for these traits during domestication. In addition, 36 (34.6%) of 104 genes preferentially expressed in indica and 256 (52.2%) of 490 genes preferentially expressed in japonica were annotated as genes of unknown function. Biotic stress overview in the MapMan toolkit revealed key elements of the signaling pathway for defense response in japonica or indica eQTLs. The percentage of screened genes preferentially expressed in indica was 4-fold higher (34.6%) and that in japonica was 5-fold (52.2%) higher than expected (11.1%), suggesting that genes of unknown function are responsible for the novel traits that distinguish japonica and indica cultivars. The identification of 10 functionally characterized genes expressed preferentially in either japonica or indica highlights the significance of our candidate genes during the domestication of rice species. Functional analysis of the roles of individual components of stress-mediated signaling pathways will shed light on potential molecular mechanisms to improve

  1. Seed Germination Behaviors Of Some Aerobic Rice Cultivars Oryza Sativa L After Priming With Polyethylene Glycol-8000 Peg-8000

    Directory of Open Access Journals (Sweden)

    Elkheir H.A

    2015-08-01

    Full Text Available Seed Priming Is Famous Technique To Accelerate Seed Germination Behaviors. This Experiment Was Conducted To Study The Effect Of Polyethylene Glycol-8000 Peg-8000 As Priming Agent On Seed Germination Behavior Of Some Aerobic Rice Cultivars Oryza Sativa L. Experiment Was Carried Out By Using Two-Factor Three Aerobic Rice Cultivars And Peg With Four Replications Which Arranged In Factorial System Design And Conducted With Completely Randomized Design. The Factor Was Varieties Which Were Inpago 8 V1 Ir64 V2 And Situbagendit V3 Combine With 4 Levels Of Peg Concentrations 0100 And 200 Gl-1 And Control With No Treatment. Experiment Was Repeated 4 Times So Total Number Of Experimental Units Were 48. Germination Parameters Measured Were Germination Percentage Germination Index Days Of 50 Germination Seedling Fresh Weight Mg Seedling Shoot Fresh Weight And Root Fresh Weight Mg Seedling Dry Weigh Mg Seedling Shoot Dry Weight And Root Dry Weight Mg ShootRoot Ratio Seedling Length Cm Seedling Root Length Cm And Shoot Length Cm And Seed Vigor Index. The Results Indicated That Seed Priming Significantly Affected Germination Behaviors Compared With Control Depending Upon Varieties. The Highest Germination Was Obtained Under Laboratory And Greenhouse Condition By The Treatment Of Peg 200 G L-1 On The Situbagendit And Ir-64 Variety 90.25 And 93.33 Respectively Compared To Control In Inpago-8 In Both Laboratory 75.75 And Greenhouse 80 . As Implementation To Increase Seed And Seedling Vigor Of Rice It Is A Best Practice To Use Peg Priming With 200 Gl-1 Solutions Depend Upon Varietal Response And We Suggest That More Research About The Effect Of Peg As Seed Priming Techniques On Seed Germination Behavior Of Many Grain Crops Is Needed To Confirm The Methodology.

  2. Biomass and elemental concentrations of 22 rice cultivars grown under alternate wetting and drying conditions at three field sites in Bangladesh.

    Science.gov (United States)

    Norton, Gareth J; Travis, Anthony J; Danku, John M C; Salt, David E; Hossain, Mahmud; Islam, Md Rafiqul; Price, Adam H

    2017-08-01

    As the global population grows, demand on food production will also rise. For rice, one limiting factor effecting production could be availability of fresh water, hence adoption of techniques that decrease water usage while maintaining or increasing crop yield are needed. Alternative wetting and drying (AWD) is one of these techniques. AWD is a method by which the level of water within a rice field cycles between being flooded and nonflooded during the growth period of the rice crop. The degree to which AWD affects cultivars differently has not been adequately addressed to date. In this study, 22 rice cultivars, mostly landraces of the aus subpopulation, plus some popular improved indica cultivars from Bangladesh, were tested for their response to AWD across three different field sites in Bangladesh. Grain and shoot elemental concentrations were determined at harvest. Overall, AWD slightly increased grain mass and harvest index compared to plants grown under continually flooded (CF) conditions. Plants grown under AWD had decreased concentrations of nitrogen in their straw compared to plants grown under CF. The concentration of elements in the grain were also affected when plants were grown under AWD compared to CF: Nickel, copper, cadmium and iron increased, but sodium, potassium, calcium, cobalt, phosphorus, molybdenum and arsenic decreased in the grains of plants grown under AWD. However, there was some variation in these patterns across different sites. Analysis of variance revealed no significant cultivar × treatment interaction, or site × cultivar × treatment interaction, for any of the plant mass traits. Of the elements analyzed, only grain cadmium concentrations were significantly affected by treatment × cultivar interactions. These data suggest that there is no genetic adaptation amongst the cultivars screened for response to AWD, except for grain cadmium concentration and imply that breeding specifically for AWD is not needed.

  3. Differential effects of rice bran cultivars to limit Salmonella Typhimurium in chicken cecal in vitro incubations and impact on the cecal microbiome and metabolome

    Science.gov (United States)

    Park, Si Hong; Roto, Stephanie M.; Nealon, Nora Jean; Ryan, Elizabeth P.

    2017-01-01

    In this study, rice brans from different cultivars (Calrose, Jasmine, and Red Wells) were assessed for their ability to inhibit Salmonella enterica serovar Typhimurium using an in vitro mixed anaerobic culture system containing cecal microbiota obtained from broilers of different ages. Salmonella Typhimurium was added to controls (feed only, cecal only, and feed + cecal material) and treatments (feed + cecal + different rice brans) and S. Typhimurium populations were enumerated at 0, 24, and 48 h. Two experimental conditions were applied 1) unadapted condition in which S. Typhimurium was added at the beginning of the culture incubation and 2) adapted condition in which S. Typhimurium was added after a 24 hour pre-incubation of the cecal bacteria with the feed and/or rice bran. Among the three rice brans, only Calrose exhibited a rapid inhibition of S. Typhimurium, which decreased to undetectable levels after 24 h under the adapted incubation. Changes in microbiological composition and metabolites by addition of Calrose bran were also investigated with an Illumina MiSeq platform and gas chromatography—mass spectrometry, respectively. Addition of Calrose bran resulted in significant changes including decreased Firmicutes phylum abundance and an increased number of metabolites associated with fatty acid metabolism. In summary, it appears that rice bran from specific rice cultivars may be effective as a means to reduce Salmonella in the chicken ceca. In addition, Calrose rice bran inclusion leads to changes in cecal microbiological composition and metabolite profile. PMID:28937988

  4. Root-associated bacterial endophytes from Ralstonia solanacearum resistant and susceptible tomato cultivars and their pathogen antagonistic effects

    Directory of Open Access Journals (Sweden)

    Reshmi eUpreti

    2015-04-01

    Full Text Available This study was undertaken to assess if the root-associated native bacterial endophytes in tomato have any bearing in governing the host resistance to the wilt pathogen Ralstonia solanacearum. Internal colonization of roots by bacterial endophytes was confirmed through confocal imaging after SYTO-9 staining. Endophytes were isolated from surface-sterilized roots of 4-week old seedlings of known wilt resistant (R tomato cultivar Arka Abha and susceptible (S cv. Arka Vikas on nutrient agar after plating the tissue homogenate. Arka Abha displayed more diversity with nine distinct organisms while Arka Vikas showed five species with two common organisms (Pseudomonas oleovorans and Agrobacterium tumefaciens. Screening for general indicators of biocontrol potential showed more isolates from Arka Abha positive for siderophore, HCN and antibiotic biosynthesis than from Arka Vikas. Direct challenge against the pathogen indicated strong antagonism by three Arka Abha isolates (P. oleovorans, Pantoea ananatis and Enterobacter cloacae and moderate activity by three others, while just one isolate from Arka Vikas (P. oleovorans showed strong antagonism. Validation for the presence of bacterial endophytes on three R cultivars (Arka Alok, Arka Ananya, Arka Samrat showed 8-9 antagonistic bacteria in them in comparison with four species in the three S cultivars (Arka Ashish, Arka Meghali, Arka Saurabhav. Altogether 34 isolates belonging to five classes, 16 genera and 27 species with 23 of them exhibiting pathogen antagonism were isolated from the four R cultivars against 17 isolates under three classes, seven genera and 13 species from the four S cultivars with eight isolates displaying antagonistic effects. The prevalence of higher endophytic bacterial diversity and more antagonistic organisms associated with the seedling roots of resistant cultivars over susceptible genotypes suggest a possible role by the root-associated endophytes in natural defense against the

  5. Cultivares de arroz irrigado e nutrientes na água de drenagem em diferentes sistemas de cultivos Irrigated rice cultivars and drainnage water nutrient under differnt managements systems

    Directory of Open Access Journals (Sweden)

    Lauro Weber

    2003-02-01

    components of four irrigated rice cultivars under different management systems, as well as, to measure the concentration of nutrients in the initial drainage water. The research was conducted during the 1998/99 growing season on a lowland area on a PLANOSOIL located at the Federal University of Santa Maria-RS, Brazil. The rice cultivars were IRGA 417, EL PASO 144, BRS TAIM and EPAGRI 108. The management systems were: conventional and minimum tillage and pre-germinated and "mix" of pre-germinated and seedlings transplants. The experimental design was a randomized aplit block with four replications. The conventional and minimum tillage were seeded in November 01st, 1998 and the pre-germinated and mix of pre-germinated and seedlings transplants were estabhished in November 18th, 1998. Seed yield was affected by management system except for the cultivar EL PASO 144 that had the same yield regardless treatments. EPAGRI 108 had the highest average yields, 8349kg ha-1. The highest number of panicles per square meter was observed in the pre-germinated and mix pre-germinated systems. The transplanted seedlings had the highest number of seeds per panicles. Regardless the management systems, EL PASO 144 presented thehighest number of seeds per panicle and EPAGRI 108 the heavier seeds. Nutrient concentration in the initial dreinage water was similar in all systems with average N, P, K, Ca, Mg and Fe concentrations of 5.02, 2.06, 10.33, 6.38, 3.51 and 2.56 mg l-1, respectively.

  6. Comparative transcriptome profiling of the early response to Magnaporthe oryzae in durable resistant vs susceptible rice (Oryza sativa L. genotypes.

    Directory of Open Access Journals (Sweden)

    Paolo Bagnaresi

    Full Text Available Durable resistance to blast, the most significant fungal disease of rice, represents an agronomically relevant character. Gigante Vercelli (GV and Vialone Nano (VN are two old temperate japonica Italian rice cultivars with contrasting response to blast infection: GV displays durable and broad resistance while VN is highly susceptible. RNA-seq was used to dissect the early molecular processes deployed during the resistance response of GV at 24 h after blast inoculation. Differential gene expression analysis identified 1,070 and 1,484 modulated genes, of which 726 and 699 were up regulated in response to infection in GV and VN, respectively. Gene ontology (GO enrichment analyses revealed a set of GO terms enriched in both varieties but, despite this commonality, the gene sets contributing to common GO enriched terms were dissimilar. The expression patterns of genes grouped in GV-specific enriched GO terms were examined in detail including at the transcript isoform level. GV exhibited a dramatic up-regulation of genes encoding diterpene phytoalexin biosynthetic enzymes, flavin-containing monooxygenase, class I chitinase and glycosyl hydrolase 17. The sensitivity and high dynamic range of RNA-seq allowed the identification of genes critically involved in conferring GV resistance during the early steps of defence perception-signalling. These included chitin oligosaccharides sensing factors, wall associated kinases, MAPK cascades and WRKY transcription factors. Candidate genes with expression patterns consistent with a potential role as GV-specific functional resistance (R gene(s were also identified. This first application of RNA-seq to dissect durable blast resistance supports a crucial role of the prompt induction of a battery of responses including defence-related genes as well as members of gene families involved in signalling and pathogen-related gene expression regulation.

  7. Susceptibility of the rice stem borer, Chilo suppressalis (Lepidoptera: Crambidae), to flubendiamide in China.

    Science.gov (United States)

    Wu, Min; Zhang, Shuai; Yao, Rong; Wu, Shunfan; Su, Jianya; Gao, Congfen

    2014-06-01

    The rice stem borer, Chilo suppressalis (Walker), is an important rice pest in China, and has evolved resistance to several classes of insecticides. Flubendiamide is a phthalic diamide insecticide that shows selective insecticidal activity against lepidopterous insects. The susceptibility of 40 field populations of C. suppressalis, collected in 2011 and 2012 in seven provinces of south-eastern China, to flubendiamide was determined through rice seedling dipping bioassay method. Of these 40 populations, seven populations that were seldom exposed to flubendiamide were used to set up the baseline sensitivity, and the LC50 value was 0.092 mg/L. Variation in susceptibility among the 40 field populations was high (34-fold). The range of mean lethal concentration (LC50) values in response to this chemical was between 0.032 mg/L (FS11) and 1.090 mg/L (JH12) across the populations. Substantial variations of the susceptibility to flubendiamide were detected among different geographic populations. There was no significant difference observed between years for most populations, except for populations from Jinhua and Lujiang. Resistance ratios to the chemical ranged from 0.8 to 11.8, indicating that most colonies remained susceptible or showed certain decrease in susceptibility. It was found that 16 of the 40 populations had some level of resistance. However, moderate level of resistance was discovered in only one population from JH12 from Zhejiang province (11.8-fold). Other 15 populations showed low level of resistance (5.1-9.3-fold) to flubendiamide. These data are useful in future monitoring programs for detecting any changes in susceptibility as a result of using flubendiamide.

  8. Eficiência do uso e resposta à aplicação de fósforo de cultivares de arroz em solos de terras altas Use efficiency and response to phosphorus of application rice cultivars in highlands soils

    Directory of Open Access Journals (Sweden)

    Eliane Aparecida Rotili

    2010-01-01

    Full Text Available Objetivou-se com este trabalho estudar a eficiência e resposta quanto ao uso de fósforo de cultivares de arroz em solos de terras altas no sul do Estado de Tocantins. Os tratamentos envolveram seis cultivares comerciais de arroz (BRS-Bonança BRS-Caiapó, BRS-Sertaneja, BRSMG-Curinga, BRSMG-Conai e BRS-Primavera, que foram cultivadas em dois ambientes distintos. Para simular ambientes com baixo e alto nível de fósforo, foram utilizadas as doses 20 e 120 kg ha-1 de P2O5. O delineamento experimental utilizado foi o de blocos casualizados, com quatro repetições. Através da produtividade de grãos, classificaram-se as cultivares quanto à eficiência no uso e resposta à aplicação do fósforo. A cultivar BRS-Bonança foi mais eficiente quanto ao uso de fósforo e responsiva à sua aplicação.This research's objective was to study the efficiency in the usage of phosphorus by rice cultivars in highland soils in the South of Tocantins State. The experiments evaluated six commercial cultivars of rice (BRS-Bonança BRS-Caiapó, BRS-Sertaneja, BRSMG-Curinga, BRSMG-Conai and BRS-Primavera, grown in areas with high and low phosphorus application: 20 and 120 kg ha-1 of P2O5. The experiments were carried out in a completely randomized blocks design, with four replicates. Based on grain yield, cultivars were classified in respect to the efficiency and response to phosphorus fertilization. The cultivar BRS-Bonança presented the highest phosphorus use efficiency and was the most responsive.

  9. Differential gene expression in an elite hybrid rice cultivar (Oryza sativa, L and its parental lines based on SAGE data

    Directory of Open Access Journals (Sweden)

    Chen Chen

    2007-09-01

    Full Text Available Abstract Background It was proposed that differentially-expressed genes, aside from genetic variations affecting protein processing and functioning, between hybrid and its parents provide essential candidates for studying heterosis or hybrid vigor. Based our serial analysis of gene expression (SAGE data from an elite Chinese super-hybrid rice (LYP9 and its parental cultivars (93-11 and PA64s in three major tissue types (leaves, roots and panicles at different developmental stages, we analyzed the transcriptome and looked for candidate genes related to rice heterosis. Results By using an improved strategy of tag-to-gene mapping and two recently annotated genome assemblies (93-11 and PA64s, we identified 10,268 additional high-quality tags, reaching a grand total of 20,595 together with our previous result. We further detected 8.5% and 5.9% physically-mapped genes that are differentially-expressed among the triad (in at least one of the three stages with P-values less than 0.05 and 0.01, respectively. These genes distributed in 12 major gene expression patterns; among them, 406 up-regulated and 469 down-regulated genes (P Conclusion We improved tag-to-gene mapping strategy by combining information from transcript sequences and rice genome annotation, and obtained a more comprehensive view on genes that related to rice heterosis. The candidates for heterosis-related genes among different genotypes provided new avenue for exploring the molecular mechanism underlying heterosis.

  10. Effects of cultivars, organic cropping management and environment on antioxidants in whole grain rice

    Science.gov (United States)

    Whole grain rice contains functional antioxidants such as phenolics, flavonoids (including proanthocyanidins), vitamin E homologues (tocopherols and tocotrienols) and gamma-oryzanol that have positive effects on human health. These antioxidants are secondary metabolites in plants that can be induced...

  11. Acceleration of germination of super-hard rice cultivar EM10 by soaking with red onion.

    Science.gov (United States)

    Nakamura, Sumiko; Ohtsubo, Ken'ichi

    2011-01-01

    Red onion accelerated the germination of rice seeds and inhibited microbial infestation during germination. After germination with red onion for 16 h at 35 °C, super-hard rice EM10 showed a higher germination ratio (2.3 times), and it contained more GABA (2.3 times) and glucose (2.9 times) than that soaked without onion. Due to soaking with red onion, germinated EM10 was fortified with quercetin (18 mg/100 g).

  12. Características de plantas de cultivares de arroz irrigado relacionadas à habilidade competitiva com plantas concorrentes Characteristics of flooded rice cultivar plants related to competitive ability against weeds concurrent plants

    Directory of Open Access Journals (Sweden)

    N.G. Fleck

    2003-04-01

    Full Text Available Plantas que apresentam rápido crescimento tendem a ocupar precocemente nichos disponíveis, utilizando o espaço de suas vizinhas. Em geral, esses vegetais adquirem prioridade na utilização dos recursos do meio. O objetivo deste trabalho foi avaliar variações em características de crescimento de cultivares de arroz irrigado. Para isso, conduziu-se um experimento em campo na estação de crescimento de 2000/2001, em Cachoeirinha-RS. Investigou-se o comportamento de oito cultivares de arroz, cultivados em presença e ausência de plantas de arroz do cultivar EEA 406, simulando infestação de arroz-vermelho, estabelecida com densidade média de 30 plantas m-2. Entre 15 e 60 dias após a semeadura (DAS, avaliou-se a evolução de área foliar, estatura e massa aérea das plantas de arroz. Com esses dados, calcularam-se razão de área foliar (RAF, taxa de crescimento relativo (TCR e taxa de assimilação líquida (TAL dos cultivares. Os cultivares Ligeirinho e XL 6 apresentaram elevadas velocidades de ganho em área foliar, estatura e massa aérea; com isso, alcançaram as maiores coberturas do solo, juntamente com o cultivar IR 841. Por outro lado, os cultivares Bluebelle e Formosa mostraram lento crescimento absoluto no período avaliado, mas, em geral, apresentaram os maiores valores para TCR e TAL.Fast-growing plants tend to occupy available niches utilizing these spaces ahead of their neighbors. In general, these plants have priority over others in the use of environmental resources. The objective of this research was to evaluate variations in growth characteristics of flooded rice cultivars. A field experiment was carried out during the 2000/01 summer season, in Cachoeirinha, RS, Brazil. The behavior of eight rice cultivars, grown in the absence or presence of the EEA 406 rice genotype was investigated, simulating a red rice infestation, established at an average density of 30 plants m-2. From 15 to 60 days after seeding (DAS

  13. Effect of Transplanting Times on Rate and Duration of Grain Filling, Final Grain Weight and Grain Yield of Rice Cultivars

    Directory of Open Access Journals (Sweden)

    A. Vahdati-Rad

    2016-05-01

    Full Text Available In order to investigate the effects of temperature and radiation on rate and duration of grain filling and final grain weight in rice cultivars, a split plot experiment based on randomized complete block design with three replications was conducted at different transplanting times at the research field of University of Guilan, Rasht, Iran in 2013. Factors were: transplanting dates in main plots (5 May, 20 May and 5 June and rice cultivars (Hashemi, Ali Kazemi, Sangejo, Khazar, Dorfak and Gouhar in sub plots. The greatest grain weight (31.9 mg was obtained in Gouhar at 20 May and the smallest grain weight (20.4 mg was observed in Sangejo at 5 June transplanting dates. The longest effective filling period (32.9 days was achieved in Gouhar at 5 May transplanting date and the shortest grain filling duration (13.9 days was obtained in Hashemi. The greatest grain filling rate (1.62 mg day-1 was obtained in the Hashemi and the smallest rate (0.92 mg day-1 was observed in Gouhar. Significant correlations were observed between cumulative temperature and radiation with final grain weight (R = 0.689. There were significant and positive correlations between the cumulative temperature and irradiance with grain filling duration, in contrary to negative correlations with grain filling rate and grain filling period. The results of this experiment showed that the grain filling duration plays a greater role, than grain filling rate, in determination of the grain weight. It could be concluded that an early transplanting (5 May brings about favorable temperature and radiation conditions for an appropriate grain filling period and a greater final grain weight.

  14. Defining the genome structure of 'Tongil' rice, an important cultivar in the Korean "Green Revolution".

    Science.gov (United States)

    Kim, Backki; Kim, Dong-Gwan; Lee, Gileung; Seo, Jeonghwan; Choi, Ik-Young; Choi, Beom-Soon; Yang, Tae-Jin; Kim, Kwang Soo; Lee, Joohyun; Chin, Joong Hyoun; Koh, Hee-Jong

    2014-12-01

    Tongil (IR667-98-1-2) rice, developed in 1972, is a high-yield rice variety derived from a three-way cross between indica and japonica varieties. Tongil contributed to the self-sufficiency of staple food production in Korea during a period known as the 'Korean Green Revolution'. We analyzed the nucleotide-level genome structure of Tongil rice and compared it to those of the parental varieties. A total of 17.3 billion Illumina Hiseq reads, 47× genome coverage, were generated for Tongil rice. Three parental accessions of Tongil rice, two indica types and one japonica type, were also sequenced at approximately 30x genome coverage. A total of 2,149,991 SNPs were detected between Tongil and Nipponbare varieties. The average SNP frequency of Tongil was 5.77 per kb. Genome composition was determined based on SNP data by comparing Tongil with three parental genome sequences using the sliding window approach. Analyses revealed that 91.8% of the Tongil genome originated from the indica parents and 7.9% from the japonica parent. Copy numbers of SSR motifs, ORF gene distribution throughout the whole genome, gene ontology (GO) annotation, and some yield-related QTLs or gene locations were also comparatively analyzed between Tongil and parental varieties using sequence-based tools. Each genetic factor was transferred from the parents into Tongil rice in amounts that were in proportion to the whole genome composition. Tongil was derived from a three-way cross among two indica and one japonica varieties. Defining the genome structure of Tongil rice demonstrates that the Tongil genome is derived primarily from the indica genome with a small proportion of japonica genome introgression. Comparative gene distribution, SSR, GO, and yield-related gene analysis support the finding that the Tongil genome is primarily made up of the indica genome.

  15. Effect of salinity stress on growth and carbohydrate metabolism in three rice (Oryza sativa L.) cultivars differing in salinity tolerance.

    Science.gov (United States)

    Pattanagul, Wattana; Thitisaksakul, Maysaya

    2008-10-01

    Rice seedlings cv. Khao Dawk Mali 105 (salt-sensitive), Luang Anan (moderately salt-tolerant) and Pokkali (salt-tolerant) were exposed to 0, 50, 100 and 150 mM NaCI for 9 d. Salinity stress caused reduction in leaf relative water contents in all cultivars. Shoot length of cv. Pokkali was least affected by salinity stress whereas increased root length in response to salinity stress was apparent in cvs. Khao Dawk Mali 105 and Luang Anan. Increased salinity level also caused reduction in fresh and dry weights in cvs. Khao Dawk Mali 105 and Luang Anan, but had no effect in cv. Pokkali except at 150 mM. Accumulation of total soluble sugars and sucrose in mature leaves were observed in cv. Khao Dawk Mali 105 exposed to high level of salinity whereas their concentrations in cvs. Luang Anan and Pokkali remained the same as control plants. Accumulation of sucrose in cv. Khao Dawk Mali 105 was suggested to be resulted from the alteration of photosynthate partitioning since the activities of sucrose phosphate synthase were not affected by salinity in this cultivar. On the contrary, salinity stress induced an accumulation of starch in cv. Pokkali. It is suggested that partitioning sugars into starch may involve in salinity tolerance by avoiding metabolic alterations.

  16. Selenium Fortification of an Italian Rice Cultivar via Foliar Fertilization with Sodium Selenate and Its Effects on Human Serum Selenium Levels and on Erythrocyte Glutathione Peroxidase Activity

    Directory of Open Access Journals (Sweden)

    Attilio Giacosa

    2014-03-01

    Full Text Available Selenium food fortification could be a cost-effective strategy to counteract the inadequacy of selenium intake among the Italian population. In this study, the effect of foliar fertilization with sodium selenate of an Italian rice cultivar and the increase of serum selenium and of erythrocyte glutathione peroxidase (GPx activity after intake of fortified rice, have been evaluated. The effect of foliar fertilization with sodium selenate (50 g Se/ha vs. water was studied. Moreover, in a randomized, double-blind study, 10 healthy women supplemented their usual diet with a daily dose of 80 g of Se-enriched-rice and 10 matched-women with 80 g of regular rice. Before, after 5 and 20 days of supplementation, serum Se and GPx-activity were evaluated. The mean selenium content in Se-enriched-rice was 1.64 ± 0.28 μg/g, while in regular rice it was 0.36 ± 0.15 μg/g (p < 0.001. A significant increase of serum Se and GPx-activity was observed only in the intervention group and only after 20 days. The results show that selenium fortification of rice can be achieved with foliar fertilization with sodium selenate and that the 20 days intake of this Se-enriched-rice increases the serum selenium levels and GPx-activity.

  17. Identification and Characterization of Differentially Expressed Genes in Inferior and Superior Spikelets of Rice Cultivars with Contrasting Panicle-Compactness and Grain-Filling Properties.

    Directory of Open Access Journals (Sweden)

    Sudhanshu Sekhar

    Full Text Available Breeding programs for increasing spikelet number in rice have resulted in compactness of the panicle, accompanied by poor grain filling in inferior spikelets. Although the inefficient utilization of assimilate has been indicated as responsible for this poor grain filling, the underlying cause remains elusive. The current study utilized the suppression subtractive hybridization technique to identify 57 and 79 genes that overexpressed in the superior and inferior spikelets (with respect to each other, respectively, of the compact-panicle rice cultivar Mahalaxmi. Functional categorization of these differentially expressed genes revealed a marked metabolic difference between the spikelets according to their spatial location on the panicle. The expression of genes encoding seed storage proteins was dominant in inferior spikelets, whereas genes encoding regulatory proteins, such as serine-threonine kinase, zinc finger protein and E3 ligase, were highly expressed in superior spikelets. The expression patterns of these genes in the inferior and superior spikelets of Mahalaxmi were similar to those observed in another compact-panicle cultivar, OR-1918, but differed from those obtained in two lax-panicle cultivars, Upahar and Lalat. The results first suggest that the regulatory proteins abundantly expressed in the superior spikelets of compact-panicle cultivars and in both the superior and inferior spikelets of lax-panicle cultivars but poorly expressed in the inferior spikelets of compact-panicle cultivars promote grain filling. Second, the high expression of seed-storage proteins observed in the inferior spikelets of compact-panicle cultivars appears to inhibit the grain filling process. Third, the low expression of enzymes of the Krebs cycle in inferior spikelets compared with superior spikelets of compact-panicle cultivars is bound to lead to poor ATP generation in the former and consequently limit starch biosynthesis, an ATP-consuming process

  18. Impact of ambient and elevated levels of ozone on growth, reproductive development and yield of two cultivars of rice ( Oryza sativa L.)

    Energy Technology Data Exchange (ETDEWEB)

    Agrawal, S. B.; Abhijit, S.

    2009-07-01

    Tow locally grown high yielding varieties of rice (Oryza sativa L. var Malviya dhan 36 and var shivani), were transplanted within the open top chambers (OTCs) at the age of 20 days. five different experimental plots were designed as open plot (OP), non-filtered chamber (NFCs), NFCs with 10 ppb ozone (O{sub 3}), NFCs with 30 ppb O{sub 3} and filtered chamber (FCs) to assess the impact of ambient and elevated levels of O{sub 3} on rice. Twelve hourly monitoring of O{sub 3} and measurements of meteorological variables were done at experimental site during the growth period of rice plants. Morphological, reproductive, physico logical and biochemical parameters were assessed to evaluate the responses of rice cultivars to ambient and elevated levels of O{sub 3}. (Author)

  19. Polyamine biosynthesis in rice cultivars under salt stress and comparison with observations under drought stress

    Directory of Open Access Journals (Sweden)

    Phuc Thi Do

    2014-05-01

    Full Text Available Soil salinity affects a large proportion of rural area and limits agricultural productivity. To investigate differential adaptation to soil salinity, we studied salt tolerance of 18 varieties of Oryza sativa using a hydroponic culture system. Based on visual inspection and photosynthetic parameters, cultivars were classified according to their tolerance level. Additionally, biomass parameters were correlated with salt tolerance. Polyamines have frequently been demonstrated to be involved in plant stress responses and therefore soluble leaf polyamines were measured. Under salinity, putrescine (Put content was unchanged or increased in tolerant, while dropped in sensitive cultivars. Spermidine (Spd content was unchanged at lower NaCl concentrations in all, while reduced at 100 mM NaCl in sensitive cultivars. Spermine (Spm content was increased in all cultivars. A comparison with data from 21 cultivars under long-term, moderate drought stress revealed an increase of Spm under both stress conditions. While Spm became the most prominent polyamine under drought, levels of all three polyamines were relatively similar under salt stress. Put levels were reduced under both, drought and salt stress, while changes in Spd were different under drought (decrease or salt (unchanged conditions. Regulation of polyamine metabolism at the transcript level during exposure to salinity was studied for genes encoding enzymes involved in the biosynthesis of polyamines and compared to expression under drought stress. Based on expression profiles, investigated genes were divided into generally stress-induced genes (ADC2, SPD/SPM2, SPD/SPM3, one generally stress-repressed gene (ADC1, constitutively expressed genes (CPA1, CPA2, CPA4, SAMDC1, SPD/SPM1, specifically drought-induced genes (SAMDC2, AIH, one specifically drought-repressed gene (CPA3 and one specifically salt-stress repressed gene (SAMDC4, revealing both overlapping and specific stress responses under these

  20. Rice root-associated bacteria : insights into community structures across 10 cultivars

    NARCIS (Netherlands)

    Hardoim, P. R.; Andreote, F. D.; Reinhold-Hurek, B.; Sessitsch, A.; van Overbeek, L. S.; van Elsas, J. D.

    In this study, the effects of plant genotype, soil type and nutrient use efficiency on the composition of different bacterial communities associated with rice roots were investigated. Thus, total bacteria, Alpha- and Betaproteobacteria, Pseudomonas and Actinobacteria were studied using PCR, followed

  1. Rice root-associated bacteria: insights into community structures across 10 cultivars

    NARCIS (Netherlands)

    Hardoim, P.R.; Andreote, F.D.; Reinhold-Hurek, B.; Sessitsch, A.; Overbeek, van L.S.; Elsas, van J.D.

    2011-01-01

    In this study, the effects of plant genotype, soil type and nutrient use efficiency on the composition of different bacterial communities associated with rice roots were investigated. Thus, total bacteria, Alpha- and Betaproteobacteria, Pseudomonas and Actinobacteria were studied using PCR, followed

  2. Molecular Genetic Diversity of Major Indian Rice Cultivars over Decadal Periods.

    Directory of Open Access Journals (Sweden)

    Gangaprasad Choudhary

    Full Text Available Genetic diversity in representative sets of high yielding varieties of rice released in India between 1970 and 2010 was studied at molecular level employing hypervariable microsatellite markers. Of 64 rice SSR primer pairs studied, 52 showed polymorphism, when screened in 100 rice genotypes. A total of 184 alleles was identified averaging 3.63 alleles per locus. Cluster analysis clearly grouped the 100 genotypes into their respective decadal periods i.e., 1970s, 1980s, 1990s and 2000s. The trend of diversity over the decadal periods estimated based on the number of alleles (Na, allelic richness (Rs, Nei's genetic diversity index (He, observed heterozygosity (Ho and polymorphism information content (PIC revealed increase of diversity over the periods in year of releasewise and longevitywise classification of rice varieties. Analysis of molecular variance (AMOVA suggested more variation in within the decadal periods than among the decades. Pairwise comparison of population differentiation (Fst among decadal periods showed significant difference between all the pairs except a few. Analysis of trends of appearing and disappearing alleles over decadal periods showed an increase in the appearance of alleles and decrease in disappearance in both the categories of varieties. It was obvious from the present findings, that genetic diversity was progressively on the rise in the varieties released during the decadal periods, between 1970s and 2000s.

  3. Genetic parameters estimation on functional dryness traits of crossed black paddy rice "Baas Selem Cultivar X Situ Patenggang” variety

    Directory of Open Access Journals (Sweden)

    I.G.P.M. Aryana

    2014-07-01

    Full Text Available The aims of this study were to elucidate heritability and the role of drought traits genes of black paddy rice for determination base of the selection method to obtain drought tolerant and high yield potential of black paddy rice. The study was conducted through two experiments during February-November 2013. The first experiment was the establishment of populations from crosses carried out in the hybridization room. The second trial was evaluation of the genetic diversity of drought properties held in the greenhouse of the Faculty of Agriculture, University of Mataram. Planting was carried out in pots without experiment design. Population of P1 (parental-Situ Patenggang, P2 (parental-Baas Selem were 50 plants of each; population of F1, F1BC.1.2, and F1BC.1.1 were 25 plants of each, and 250 plants of F2, as well as control of drought susceptible variety (IR20 was 10 plants. To determine the heritability and the role of genes controlling drought traits were used index of bud dry and cure of IRRI standard. The results showed that crossing of black paddy rice "Baas Selem x Situ Patenggang” had relatively moderate heritability in broad sense and low heritability in narrow sense. In the crossed F1 population was found that gene action of drought trait was not perfectly dominant

  4. Susceptibility of unprotected seeds and seeds of local bambara groundnut cultivars protected with insecticidal essential oils to infestation by Callosobruchus maculatus (F.) (Coleoptera: Bruchidae).

    Science.gov (United States)

    Ajayi; Lale

    2000-01-15

    Ten local cultivars of bambara groundnut, Vigna subterranea (L.) Verdcourt obtained directly from farmers in Potiskum, Nigeria and from the Institute for Agricultural Research, Samaru, Nigeria were compared with three improved varieties developed at the International Institute of Tropical Agriculture, Ibadan, Nigeria for their susceptibility to infestation by Callosobruchus maculatus (F.). Three cultivars (Maifarinhaneh, Angale and Bunmonu) with a susceptibility index (SI) of 3.06-3.71 were identified as slightly susceptible to C. maculatus; four cultivars (Bagantere, Bakingangala, Ole and Bakiyawa 1) and one improved variety (TVSU 1061) with an SI of 4.39-4.93 as moderately susceptible; and three cultivars (Bidi, Uzu and Dadinkowa 1) and two improved varieties (TVSU 702 and TVSU 751) with an SI of 5.00-5.34 as susceptible. Five of the cultivars were used to examine the ability of beetle populations to overcome varietal resistance over six successive generations. Development time was significantly longer but percentage of adults that emerged and susceptibility of bambara groundnuts were significantly lower in F(4), F(5) or F(6) generations than in the F(1) or F(2) generation. The efficacy of combining insecticidal essential oils obtained from clove, Syzgium aromaticum, West African black pepper (WABP), Piper guineense, and ginger, Zingiber officinale applied at the rate of 2 mg/20 g seed and six of the local bambara groundnut cultivars (Angale, Maifarinhaneh, Bakingangala, Bagantere, Bunmonu and Bidi) with differing susceptibilities to C. maculatus (F.) was also assessed during a 3-month storage period. The three essential oils significantly reduced the percentage of C. maculatus adults that emerged from the bambara groundnut cultivars in the F(1) generation and the number of adult offspring that developed in the cultivars during the 3-month storage period. The mean number of progeny that developed in untreated seeds and seeds treated with clove, WABP and ginger

  5. Diferentes concentrações de alumínio em solução nutritiva na tolerância de cultivares de arroz Effect of different aluminum concentrations in nutrient solution on the tolerance of rice cultivars

    Directory of Open Access Journals (Sweden)

    Carlos Eduardo de Oliveira Camargo

    1984-01-01

    Full Text Available Foram estudados onze cultivares de arroz em soluções nutritivas contendo seis níveis de alumínio (0, 10, 20, 30, 40 e 50mg/litro mantendo-se constante a temperatura de 30±1°C e o pH das soluções igual a 4,0. A tolerância foi medida pelo comprimento médio da raiz primária central, peso seco total das folhas e das raízes de vinte plantas após serem cultivadas durante dez dias em soluções nutritivas contendo diferentes concentrações de alumínio. A presença de qualquer das doses de alumínio foi prejudicial a todos os cultivares estudados. Os cultivares IR-8, IR-841 e IAC-899 foram sensíveis quando se empregaram 10mg/litro de Al3+ nas soluções, ao passo que os cultivares IAC-435, IAC-120, IAC-165, IAC-164, Pérola, Blue Bonnet, IAC-47 e IAC-25 mostraram-se tolerantes, mantendo essa tolerância mesmo quando se empregaram 20mg/litro de Al3+ nas soluções. Todos os cultivares foram sensíveis quando foi aplicada a quantidade de alumínio equivalente a uma concentração de 50mg/litro. Os teores de alumínio em partes por milhão aumentaram e os teores de Ca, Mg e K diminuíram na matéria seca da parte aérea de todos os cultivares à medida que se aumentaram as concentrações de Al nas soluções nutritivas.Eleven rice cultivars were studied in relation to aluminum toxicity using six different levels of this element (0, 10, 20, 30, 40 and 50mg/l in nutrient solution under constant temperature (30±1°C and pH = 4.0. Plant tolerance was measured taking into account the central primary root length and the total leaf and root dry weight. The presence of aluminum in the solution produced harmfull effects on all rice cultivars studied. The rice cultivars IR-8, IR-841 and IAC-899 were sensitive when it was added 10mg/l of Al3+ into the solution and the cultivars IAC-435, IAC-120, Pérola, Blue Bonnet, IAC-164, IAC-25, IAC-165 and IAC-47 showed tolerance to this Al concentration. The last cultivars presented tolerance even with 20mg

  6. Indica rice genome assembly, annotation and mining of blast disease resistance genes.

    Science.gov (United States)

    Mahesh, H B; Shirke, Meghana Deepak; Singh, Siddarth; Rajamani, Anantharamanan; Hittalmani, Shailaja; Wang, Guo-Liang; Gowda, Malali

    2016-03-16

    Rice is a major staple food crop in the world. Over 80% of rice cultivation area is under indica rice. Currently, genomic resources are lacking for indica as compared to japonica rice. In this study, we generated deep-sequencing data (Illumina and Pacific Biosciences sequencing) for one of the indica rice cultivars, HR-12 from India. We assembled over 86% (389 Mb) of rice genome and annotated 56,284 protein-coding genes from HR-12 genome using Illumina and PacBio sequencing. Comprehensive comparative analyses between indica and japonica subspecies genomes revealed a large number of indica specific variants including SSRs, SNPs and InDels. To mine disease resistance genes, we sequenced few indica rice cultivars that are reported to be highly resistant (Tetep and Tadukan) and susceptible (HR-12 and Co-39) against blast fungal isolates in many countries including India. Whole genome sequencing of rice genotypes revealed high rate of mutations in defense related genes (NB-ARC, LRR and PK domains) in resistant cultivars as compared to susceptible. This study has identified R-genes Pi-ta and Pi54 from durable indica resistant cultivars; Tetep and Tadukan, which can be used in marker assisted selection in rice breeding program. This is the first report of whole genome sequencing approach to characterize Indian rice germplasm. The genomic resources from our work will have a greater impact in understanding global rice diversity, genetics and molecular breeding.

  7. sativa L.) Cultivars

    African Journals Online (AJOL)

    Abstract. Ten rice cultivars from the International Rice Germplasm Centre originating from Bangladesh were analysedfor the~r genetics of resistance to bacterial blight. The test cultivars were selected on the basis of their high level ofresistance to races IV & VI ofXanthomonas oryzae pv. oryzae. The mode ofinheri- tance was ...

  8. Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms

    Directory of Open Access Journals (Sweden)

    Shibaya Taeko

    2010-04-01

    Full Text Available Abstract Background To create useful gene combinations in crop breeding, it is necessary to clarify the dynamics of the genome composition created by breeding practices. A large quantity of single-nucleotide polymorphism (SNP data is required to permit discrimination of chromosome segments among modern cultivars, which are genetically related. Here, we used a high-throughput sequencer to conduct whole-genome sequencing of an elite Japanese rice cultivar, Koshihikari, which is closely related to Nipponbare, whose genome sequencing has been completed. Then we designed a high-throughput typing array based on the SNP information by comparison of the two sequences. Finally, we applied this array to analyze historical representative rice cultivars to understand the dynamics of their genome composition. Results The total 5.89-Gb sequence for Koshihikari, equivalent to 15.7× the entire rice genome, was mapped using the Pseudomolecules 4.0 database for Nipponbare. The resultant Koshihikari genome sequence corresponded to 80.1% of the Nipponbare sequence and led to the identification of 67 051 SNPs. A high-throughput typing array consisting of 1917 SNP sites distributed throughout the genome was designed to genotype 151 representative Japanese cultivars that have been grown during the past 150 years. We could identify the ancestral origin of the pedigree haplotypes in 60.9% of the Koshihikari genome and 18 consensus haplotype blocks which are inherited from traditional landraces to current improved varieties. Moreover, it was predicted that modern breeding practices have generally decreased genetic diversity Conclusions Detection of genome-wide SNPs by both high-throughput sequencer and typing array made it possible to evaluate genomic composition of genetically related rice varieties. With the aid of their pedigree information, we clarified the dynamics of chromosome recombination during the historical rice breeding process. We also found several

  9. Relative resistance or susceptibility of maple (Acer) species, hybrids and cultivars to six arthropod pests of production nurseries.

    Science.gov (United States)

    Seagraves, Bonny L; Redmond, Carl T; Potter, Daniel A

    2013-01-01

    Maples (Acer spp.) in production nurseries are vulnerable to numerous arthropod pests that can stunt or even kill the young trees. Seventeen cultivars representing various Acer species and hybrids were evaluated for extent of infestation or injury by shoot and trunk borers (Proteoteras aesculana, Chrysobothris femorata), potato leafhopper (Empoasca fabae), Japanese beetle (Popillia japonica), maple spider mite (Oligonychus aceris) and calico scale (Eulecanium cerasorum). Evaluations were done in replicated field plots in central and western Kentucky. All of the maples were susceptible, to varying degrees, to one or more key pest(s). Red maples (A. rubrum) were relatively vulnerable to potato leafhopper injury and borers but nearly free of Japanese beetle feeding and spider mites. Sugar maples sustained conspicuous Japanese beetle damage but had very low mite populations, whereas the opposite was true for Freeman maples (A. × freemanii). A. campestre was heavily infested by calico scale. Within each species or hybrid there were cultivar differences in degree of infestation or damage by particular pests. The results should help growers to focus pest management efforts on those plantings at greatest risk from particular pests, and to choose cultivars requiring fewer insecticide inputs to produce a quality tree. Copyright © 2012 Society of Chemical Industry.

  10. Study of water stress effects in different growth stages on yield and yield components of different rice (Oryza sativa L.) cultivars.

    Science.gov (United States)

    Sarvestani, Zinolabedin Tahmasebi; Pirdashti, Hemmatollah; Sanavy, Seyed Ali Mohammad Modarres; Balouchi, Hamidreza

    2008-05-15

    A field experiment was conducted during 2001-2003 to evaluate the effect of water stress on the yield and yield components of four rice cultivars commonly grown in Mazandaran province, Iran. In northern Iran irrigated lowland rice usually experiences water deficit during the growing season include of land preparation time, planting, tillering stage, flowering and grain filing period. Recently drought affected 20 of 28 provinces in Iran; with the southeastern, central and eastern parts of the country being most severely affected. The local and improved cultivars used were Tarom, Khazar, Fajr and Nemat. The different water stress conditions were water stress during vegetative, flowering and grain filling stages and well watered was the control. Water stress at vegetative stage significantly reduced plant height of all cultivars. Water stress at flowering stage had a greater grain yield reduction than water stress at other times. The reduction of grain yield largely resulted from the reduction in fertile panicle and filled grain percentage. Water deficit during vegetative, flowering and grain filling stages reduced mean grain yield by 21, 50 and 21% on average in comparison to control respectively. The yield advantage of two semidwarf varieties, Fajr and Nemat, were not maintained under drought stress. Total biomass, harvest index, plant height, filled grain, unfilled grain and 1000 grain weight were reduced under water stress in all cultivars. Water stress at vegetative stage effectively reduced total biomass due to decrease of photosynthesis rate and dry matter accumulation.

  11. Habilidade competitiva de plantas de arroz com biótipos de capim-arroz resistente ou suscetível ao quinclorac Competitive ability of rice plants with barnyardgrass biotypes resistant or susceptible to quinclorac

    Directory of Open Access Journals (Sweden)

    S.P. Tironi

    2009-06-01

    Full Text Available Objetivou-se com este trabalho avaliar a habilidade competitiva de plantas de arroz cultivar BRS Pelota com biótipos de capim-arroz resistente ou suscetível ao herbicida quinclorac. Para isso, foi instalado experimento em casa de vegetação, em delineamento completamente casualizado com quatro repetições, sendo os tratamentos dispostos em esquema fatorial 2 x 6. As unidades experimentais constaram de vasos plásticos contendo 10 dm³ de solo, cujo pH e nível de nutrientes foram previamente corrigidos. Os tratamentos consistiram na competição entre uma planta de arroz, cultivar BRS Pelota, com populações (0, 1, 2, 3, 4 ou 5 plantas por vaso dos biótipos de capim-arroz resistente (ECH-13 ou suscetível (ECH-12 ao herbicida quinclorac. As avaliações foram realizadas aos 40 dias após emergência, sendo avaliados; massa seca da parte aérea (MSPA, taxa de crescimento (TC, área foliar específica (AFE, razão de massa foliar (RMF, razão de área foliar (RAF e índice de área foliar (IAF. A interferência no desenvolvimento do cultivar de arroz BRS Pelota foi proporcionalmente maior com o aumento da população de ambos os biótipos de capim-arroz. Os biótipos apresentaram, em geral, habilidade competitiva similar.The objective of this study was to evaluate the competitive ability of the rice cultivar BRS Pelota with biotypes resistant or susceptible to the herbicide Quinclorac. The experiment was conducted under greenhouse conditions in a completely randomized design with four replications, with the treatments arranged in a 2 x 6 factorial. The experimental units consisted of plastic pots containing 10 dm³ of soil, with pH and nutrient level being previously corrected. The treatments consisted of a competition between a rice plant, BRS Pelota cultivar, with populations (0, 1, 2, 3, 4 or 5 plants per pot of the barnyardgrass biotypes resistant (ECH-13 or susceptible (ECH -12 to the herbicide Quinclorac. The evaluations were performed

  12. Characterization of Grain Quality and Starch Fine Structure of Two Japonica Rice (Oryza Sativa) Cultivars with Good Sensory Properties at Different Temperatures during the Filling Stage.

    Science.gov (United States)

    Zhang, Changquan; Zhou, Lihui; Zhu, Zhengbin; Lu, Huwen; Zhou, Xingzhong; Qian, Yiting; Li, Qianfeng; Lu, Yan; Gu, Minghong; Liu, Qiaoquan

    2016-05-25

    Temperature during the growing season is a critical factor affecting grain quality. High temperatures at grain filling affect kernel development, resulting in reduced yield, increased chalkiness, reduced amylose content, and poor milling quality. Here, we investigated the grain quality and starch structure of two japonica rice cultivars with good sensory properties grown at different temperatures during the filling stage under natural field conditions. Compared to those grown under normal conditions, rice grains grown under hot conditions showed significantly reduced eating and cooking qualities, including a higher percentage of grains with chalkiness, lower protein and amylose contents, and higher pasting properties. Under hot conditions, rice starch contained reduced long-chain amylose (MW 10(7.1) to 10(7.4)) and significantly fewer short-chain amylopectin (DP 5-12) but more intermediate- (DP 13-34) and long- (DP 45-60) chain amylopectin than under normal conditions, as well as higher crystallinity and gelatinization properties.

  13. An assessment of the durability and susceptibility of scab resistance in apple cultivars

    NARCIS (Netherlands)

    Kemp, H.; Maas, van der M.P.; Voorrips, R.E.; Groenwold, R.; Weg, van de W.E.

    2004-01-01

    Durable resistance to scab (Venturia inaequalis) of newly introduced cultivars is needed to achieve a considerable reduction of pesticide use. However, the assessment in the field on the level and durability of scab resistance is time and space consuming. A proper and fast indoor test should be a

  14. Genealogy of resistant and susceptible sugarcane cultivars to the yellow lea

    Directory of Open Access Journals (Sweden)

    Osmany de la C. Aday Díaz

    2014-01-01

    Full Text Available This work was done at the seedbank of Instituto Nacional de Investigaciones de la Caña de Azúcar (INICA. The objective was to diagnose the presence of the Sugarcane yellow leaf virus (SCYLV by serological method. The pedegree of commercial cultivars and ancestor lines, that are part of the genetic base of the cultivated sugar cane in Cuba, were traced back. In this way, a possible selection for resistance to SCYLV was determined in the breeding program. The presence of this disease symptoms was evaluated in 27 cultivars exploded during 1965 to 2008, and in 37 ancestor lines. In the evaluated collection, 18 ancestors with possible resistance to SCYLV were identified. 45,45% of the commercial cultivars more exploited during 1965 to 1999, and 81,25% from 2000 up to date, were infected by SCYLV. These high ratings may be linked to the fact that breeding programs developed previously in the country, did not include the resistance to this virus. It was observed that the cultivars B77418, B63118, C323-68, C89-176 and My5514 were tested negative not only for the symptoms but also to the presence of SCYLV virus, and they could be candidates for resistant parents to this disease.

  15. Resposta de duas cultivares de arroz irrigado à densidade de semeadura e à adubação nitrogenada Response of two flooded rice cultivars to seeding and nitrogen rates

    Directory of Open Access Journals (Sweden)

    Carlos Henrique Paim Mariot

    2003-02-01

    Full Text Available Diversos estudos foram realizados sobre densidade de semeadura e adubação nitrogenada em arroz irrigado, mas poucos trabalhos estudaram esses dois fatores conjuntamente. O objetivo deste trabalho foi avaliar o efeito da densidade de semeadura e da adubação nitrogenada no rendimento de grãos e nos componentes do rendimento, em duas cultivares de arroz irrigado. O experimento foi realizado no campo, durante os anos agrícolas de 1998/1999 e 1999/2000. Os tratamentos constituíram-se das combinações de duas cultivares de arroz irrigado (BR-IRGA 410 e IRGA 417, quatro densidades de semeadura (50, 100, 150 e 200 kg ha-1 e quatro níveis de nitrogênio (0, 40, 80 e 120 kg ha-1, distribuídos em blocos ao acaso, com quatro repetições. O rendimento de grãos em resposta à adubação nitrogenada não foi influenciado pela densidade de semeadura, exceto na densidade mais baixa, no segundo ano. O rendimento de grãos não variou dentro da faixa de densidade de semeadura testada. A eficiência de uso do nitrogênio foi maior na cultivar BR-IRGA 410 do que na IRGA 417 e diminuiu com o incremento da adubação nitrogenada.Many studies about seeding and nitrogen rates in flooded rice were carried out, but few works have studied these two factors altogether. The objective of this study was to evaluate the effect of seeding and nitrogen rates on grain yield and its components, in two flooded rice cultivars. The experiment was carried out in field conditions during the 1998/1999 and 1999/2000 growing seasons. Treatments consisted of the combinations of two flooded rice cultivars (BR-IRGA 410 and IRGA 417, four seeding rates (50, 100, 150, and 200 kg ha-1 and four nitrogen rates (0, 40, 80, and 120 kg ha-1 in a randomized blocks design with four replications. Grain yield in response to nitrogen fertilizer was not influenced by seeding rate, except in the lowest density, in the second year. Grain yield did not vary within the range of seeding rate tested

  16. Difference in Striga-susceptibility is reflected in strigolactone secretion profile, but not in compatibility and host preference in arbuscular mycorrhizal symbiosis in two maize cultivars.

    Science.gov (United States)

    Yoneyama, Kaori; Arakawa, Ryota; Ishimoto, Keiko; Kim, Hyun Il; Kisugi, Takaya; Xie, Xiaonan; Nomura, Takahito; Kanampiu, Fred; Yokota, Takao; Ezawa, Tatsuhiro; Yoneyama, Koichi

    2015-05-01

    Strigolactones released from plant roots trigger both seed germination of parasitic weeds such as Striga spp. and hyphal branching of the symbionts arbuscular mycorrhizal (AM) fungi. Generally, strigolactone composition in exudates is quantitatively and qualitatively different among plants, which may be involved in susceptibility and host specificity in the parasite-plant interactions. We hypothesized that difference in strigolactone composition would have a significant impact on compatibility and host specificity/preference in AM symbiosis. Strigolactones in root exudates of Striga-susceptible (Pioneer 3253) and -resistant (KST 94) maize (Zea mays) cultivars were characterized by LC-MS/MS combined with germination assay using Striga hermonthica seeds. Levels of colonization and community compositions of AM fungi in the two cultivars were investigated in field and glasshouse experiments. 5-Deoxystrigol was exuded exclusively by the susceptible cultivar, while the resistant cultivar mainly exuded sorgomol. Despite the distinctive difference in strigolactone composition, the levels of AM colonization and the community compositions were not different between the cultivars. The present study demonstrated that the difference in strigolactone composition has no appreciable impact on AM symbiosis, at least in the two maize cultivars, and further suggests that the traits involved in Striga-resistance are not necessarily accompanied by reduction in compatibility to AM fungi. © 2015 The Authors. New Phytologist © 2015 New Phytologist Trust.

  17. Dynamic metabolic responses of brown planthoppers towards susceptible and resistant rice plants.

    Science.gov (United States)

    Liu, Caixiang; Du, Ba; Hao, Fuhua; Lei, Hehua; Wan, Qianfen; He, Guangcun; Wang, Yulan; Tang, Huiru

    2017-10-01

    Brown planthopper (Nilaparvata lugens Stål, BPH) causes huge economic losses in rice-growing regions, and new strategies for combating BPH are required. To understand how BPHs respond towards BPH-resistant plants, we systematically analysed the metabolic differences between BPHs feeding on the resistant and susceptible plants using NMR and GC-FID/MS. We also measured the expression of some related genes involving glycolysis and biosyntheses of trehalose, amino acids, chitin and fatty acids using real-time PCR. BPH metabonome was dominated by more than 60 metabolites including fatty acids, amino acids, carbohydrates, nucleosides/nucleotides and TCA cycle intermediates. After initial 12 h, BPHs feeding on the resistant plants had lower levels of amino acids, glucose, fatty acids and TCA cycle intermediates than on the susceptible ones. The levels of these metabolites recovered after 24 h feeding. This accompanied with increased level in trehalose, choline metabolites and nucleosides/nucleotides compared with BPH feeding on the susceptible plants. Decreased levels of BPH metabolites at the early feeding probably resulted from less BPH uptakes of sap from resistant plants and recovery of BPH metabolites at the later stage probably resulted from their adaptation to the adverse environment with their increased hopping frequency to ingest more sap together with contributions from yeast-like symbionts in BPHs. Throughout 96 h, BPH feeding on the resistant plants showed significant up-regulation of chitin synthase catalysing biosynthesis of chitin for insect exoskeleton, peritrophic membrane lining gut and tracheae. These findings provided useful metabolic information for understanding the BPH-rice interactions and perhaps for developing new BPH-combating strategies. © 2017 The Authors. Plant Biotechnology Journal published by Society for Experimental Biology and The Association of Applied Biologists and John Wiley & Sons Ltd.

  18. Crescimento radicular e aéreo de cultivares de arroz de terras altas em função da calagem Root and shoot growth of upland rice cultivars as affected by lime application

    Directory of Open Access Journals (Sweden)

    Carlos Alexandre Costa Crusciol

    2012-01-01

    Full Text Available O presente trabalho teve como objetivo avaliar o crescimento radicular e da parte aérea, além da eficiência de absorção de nutrientes pelas cultivares de arroz Caiapó e Maravilha, em função da calagem. O experimento foi desenvolvido em casa de vegetação, sendo os tratamentos constituídos pelas cultivares Caiapó e Maravilha combinadas com os índices de saturação por bases (V% de 10, 40 e 70. O delineamento experimental utilizado foi inteiramente casualizado, com quatro repetições. Foram avaliados o número de perfilhos, comprimento radicular, matéria seca de raízes, folhas e colmos, o teor foliar e a eficiência de absorção dos macronutrientes. De forma geral, observou-se que a cultivar moderna superou a tradicional em matéria seca de raízes, comprimento radicular, número de colmos, matéria seca de colmos e da parte aérea, além de acumular mais nutrientes a cultivar tradicional, mesmo nas condições de maior acidez. No entanto, os teores de nutrientes foram maiores na cultivar Caiapó. A cultivar Maravilha possui maior crescimento radicular e da parte aérea, nos diversos níveis de acidez, enquanto a Caiapó tem maior eficiência de absorção dos nutrientes do solo. A V% de 40 é a mais efetiva para ambas as cultivares.This work aimed to evaluate root growth, shoot development and nutrient absorption efficiency by rice cultivars Caiapó and Maravilha as affected by lime application. The experiment was carried out in a greenhouse, with treatments set up by Caiapó and Maravilha cultivars in combination with the base saturation (V% of 10%, 40% and 70%. The experiment was in a randomized complete block design, with four replications. The number of tillers, root length, root dry matter, leaves and stems, leaf content and macronutrients absorption efficiency were evaluated. Comparing cultivars, Maravilha cultivar presented higher root dry weight, root length, number of stems, dry matter of stems and shoot than Caiap

  19. Differential activation of genes related to aluminium tolerance in two contrasting rice cultivars.

    Science.gov (United States)

    Roselló, Maite; Poschenrieder, Charlotte; Gunsé, Benet; Barceló, Juan; Llugany, Mercè

    2015-11-01

    Rice (Oryza sativa) is a highly Al-tolerant crop. Among other mechanisms, a higher expression of STAR1/STAR2 (sensitive to Al rhizotoxicity1/2) genes and of Nrat1 (NRAMP Aluminium Transporter 1), and ALS1 (Aluminium sensitive 1) can at least in part be responsible for the inducible Al tolerance in this species. Here we analysed the responses to Al in two contrasting rice varieties. All analysed toxicity/tolerance markers (root elongation, Evans blue, morin and haematoxylin staining) indicated higher Al-tolerance in variety Nipponbare, than in variety Modan. Nipponbare accumulated much less Al in the roots than Modan. Aluminium supply caused stronger expression of STAR1 in Nipponbare than in Modan. A distinctively higher increase of Al-induced abscisic acid (ABA) accumulation was found in the roots of Nipponbare than in Modan. Highest ABA levels were observed in Nipponbare after 48 h exposure to Al. This ABA peak was coincident in time with the highest expression level of STAR1. It is proposed that ABA may be required for cell wall remodulation facilitated by the enhanced UDP-glucose transport to the walls through STAR1/STAR2. Contrastingly, in the roots of Modan the expression of both Nrat1 coding for a plasma membrane Al-transporter and of ALS1 coding for a tonoplast-localized Al transporter was considerably enhanced. Moreover, Modan had a higher Al-induced expression of ASR1 a gene that has been proposed to code for a reactive oxygen scavenging protein. In conclusion, the Al-exclusion strategy of Nipponbare, at least in part mediated by STAR1 and probably regulated by ABA, provided better protection against Al toxicity than the accumulation and internal detoxification strategy of Modan mediated by Nrat1, ALS1 and ARS1. Copyright © 2015 Elsevier Inc. All rights reserved.

  20. Enzyme expression in indica and japonica rice cultivars under saline stress - doi: 10.4025/actascibiolsci.v34i4.8535

    Directory of Open Access Journals (Sweden)

    Luciano do Amarante

    2012-09-01

    Full Text Available The southern State of Rio Grande do Sul (RS is the main rice producer in Brazil with a 60% participation of the national production and 86% participation of the region. Rice culture irrigation system is done by flooding, which leads to soil salinization, a major environmental constraint to production since it alters the plants’ metabolism exposed to this type of stress. The indica cultivar, widely used in RS, has a higher sensitivity to salinity when compared to that of the japonica cultivar in other physiological aspects. Current research analyzes enzymes expression involved in salt-subjected indica and japonica rice cultivars’ respiration. Oryza sativa L. spp. japonica S.Kato (BRS Bojuru, IAS 12-9 Formosa and Goyakuman and Oryza sativa L. spp. indica S. Kato (BRS Taim-7, BRS Atalanta and BRS Querencia were the cultivars employed. Seedlings were transferred to 15 L basins containing 50% Hoagland nutrient solution increased by 0, 25, 50, 75 and 100 mM NaCl, and collected at 14, 28 and 42 days after transfer (DAT. Plant tissues were macerated and placed in eppendorf tubes with Scandálios extractor solution. Electrophoresis was performed in 7% of the polyacrylamide gels in vertical vats. Bands were revealed for the following enzymes systems: esterase, alcohol dehydrogenase, phosphoglucoisomerase, malate dehydrogenase, malic enzyme and alpha amylase. The enzymes expression was greater in subspecies japonica, with more intense bands in proportion to salinity increase. Results show that enzyme systems are involved in the salinity defense mechanisms in O. sativa spp. japonica cultivar.  

  1. Comparative study of genes expressed from rice fungus-resistant and susceptible lines during interactions with Magnaporthe oryzae.

    Science.gov (United States)

    Shi, Bu-Jun; Wang, Guo-Liang

    2008-12-31

    Rice blast disease caused by Magnaporthe oryzae is the most important fungal disease of rice. To understand the molecular basis of interaction between the fungus and rice, we constructed a cDNA library from a rice-resistant line inoculated with M. oryzae. One hundred and fifty-three cDNA clones were sequence analyzed, of which 129 exhibited significant nucleotide sequence homology to known genes, 21 were homologous to unknown genes, while three clones did not match to any database. However, these three unmatched clones showed sequence homology at protein level in the protein databases and one of them encoded a disease resistance-related protein kinase and was abundant in the EST collection. Northern analysis showed that this disease resistance-related protein kinase gene was induced by inoculation and only expressed in the rice-resistant, but not susceptible, lines. Southern analysis showed that this gene was present in a single copy in the rice genome and co-segregated with the M. oryzae resistance in the cross of the resistant and susceptible lines. This study illustrates that sequencing of ESTs from inoculated resistant plants can reveal genes responsive to pathogen infection, which could help understand plant defense mechanisms.

  2. Comparative proteomics of the superior and inferior spikelets at the early grain filling stage in rice cultivars contrast for panicle compactness and ethylene evolution.

    Science.gov (United States)

    Das, Kaushik; Panda, Binay B; Sekhar, Sudhanshu; Kariali, Ekamber; Mohapatra, Pravat K; Shaw, Birendra P

    2016-09-01

    The breeding programmes in rice aimed at increasing the number of spikelets per panicle have been accompanied by poor grain filling in the inferior spikelets of large panicle rice, leading to yield disadvantage. The present study attempted to understand the reason for differential grain filling in the inferior and superior spikelets by comparative proteomics considering a compact-panicle rice cultivar Mahalaxmi and a lax-panicle rice cultivar Upahar, which show poor and good grain filling, respectively. An initial study of two rice cultivars for panicle compactness and grain filling revealed an inverse correlation between the two parameters. It was further observed that the panicle compactness in Mahalaxmi was associated with a higher evolution of ethylene by the spikelets, both superior and inferior, compared with the lax-panicle Upahar. The proteomic studies revealed that the superior and inferior spikelets of Mahalaxmi differentially expressed 21 proteins that were also expressed in Upahar. However, in Upahar, only two of these proteins were differentially expressed between the superior and inferior spikelets, indicating that the metabolic activities of the spikelets occupying the superior and inferior positions on the panicle were very different in Mahalaxmi compared with those in Upahar. Among the proteins that were downregulated in the inferior spikelets compared with the superior ones in Mahalaxmi were importin-α, elongation factor 1-β and cell division control protein 48, which are essential for cell cycle progression and cell division. Low expression of these proteins might inhibit endosperm cell division in the inferior spikelets, limiting their sink capacity and leading to poor grain filling compared to that in the superior spikelets. The poor grain filling in Mahalaxmi may also be a result of the high evolution of ethylene in the inferior spikelets, which is reflected from the observation that these spikelets showed significantly higher expression of

  3. The comparative analysis of anatomical traits of four largefruited hazelnut cultivars showing different susceptibility to filbert aphid (Myzocallis coryli Goetze feeding

    Directory of Open Access Journals (Sweden)

    Elżbieta Weryszko-Chmielewska

    2012-12-01

    Full Text Available Investigations related to morphological and anatomical traits of leaves of four largefruited hazelnut (Corylus L. cultivars characterised by different susceptibility to filbert aphid (Myzocallis coryli Goetze feeding. The following parameters were measured: the thickness of leaf blade, the number of stomata, the length of secretory and mechanical hairs and their density on the leaf, the thickness of adaxial and abaxial epidermis and the thickness of their external cell walls. Observations of cross sections of the leaves were made in a light microscope and the surface of the adaxial epidermis was analysed in a scanning electron microscope. It was shown that leaves of the cultivars susceptible to M. coryli feeding had the thinnest leaf blade, especially in the main vein, and many more stomata. Besides, the cultivar most resistant to filbert aphid feeding, White Filbert, was marked by the largest height of the adaxial epidermis cells and the strongest striation of the cuticle in abaxial epidermis. On leaves of this cultivar, the number of mechanical hairs was the highest, while the lowest number of them was noted on Wonder from Bollwiller, the most susceptible cultivar.

  4. Analysis of early events in the interaction between Fusarium graminearum and the susceptible barley (Hordeum vulgare) cultivar Scarlett

    DEFF Research Database (Denmark)

    Yang, Fen; Jensen, J.D.; Svensson, Birte

    2010-01-01

    A proteomic analysis was conducted to map the events during the initial stages of the interaction between the fungal pathogen Fusarium graminearum and the susceptible barley cultivar Scarlett. Quantification of fungal DNA demonstrated a sharp increase in fungal biomass in barley spikelets at 3 days...... after inoculation. This coincided with the appearance of discrete F. graminearum-induced proteolytic fragments of beta-amylase. Based on these results, analysis of grain proteome changes prior to extensive proteolysis enabled identification of barley proteins responding early to infection by the fungus...... function was identified. Quantitative real-time RT-PCR analysis of selected genes showed a correlation between high gene expression and detection of the corresponding proteins. Fungal genes encoding alkaline protease and endothiapepsin were expressed during 1-3 days after inoculation, making them...

  5. Status of insecticide susceptibility in Anopheles arabiensis from Mwea rice irrigation scheme, Central Kenya

    Directory of Open Access Journals (Sweden)

    Vulule John M

    2006-06-01

    Full Text Available Abstract Background Control of the Anopheline mosquito vectors of malaria by use of insecticides has been shown to impact on both morbidity and mortality due to this disease. Evidence of insecticide resistance in different settings necessitates surveillance studies to allow prompt detection of resistance should it arise and thus enable its management. Possible resistance by Anopheles arabiensis mosquitoes from Mwea rice irrigation scheme in Central Kenya to insecticides in the four classes of insecticides approved by WHO for indoor residual spraying was investigated. Methods Susceptibility to DDT (an organochlorine, fenitrothion (an organophosphate, bendiocarb (a carbamate, lambdacyhalothrin and permethrin (both pyrethroids was tested using standard WHO diagnostic bioassay kits. Bioassays were performed on non-blood fed mosquitoes one- to three-day old. Knockdown was recorded every 10 min and mortality 24 h post-exposure was noted. Results Mortality 24 h post-exposure was 100% for all insecticides except for lambdacyhalothrin, which averaged 99.46%. Knockdown rates at 10 min intervals were not significantly different between the Mwea population and the susceptible KISUMU strain of Anopheles gambiae sensu stricto control. The KDT50 and KDT95 values for the Mwea population were either lower than those for the control or higher by factors of no more than 2 for most comparisons and compared well with those of An. gambiae sensu lato categorized as susceptible in other studies. Conclusion These results suggest that the Mwea population of An. arabiensis is susceptible to all the insecticides tested. This implies that vector control measures employing any of these insecticides would not be hampered by resistance.

  6. RESPONSE OF OXIDATIVE STRESS DEFENSE SYSTEMS IN RICE (ORYZA SATIVA) LEAVES WITH SUPPLEMENTAL UV-B RADIATION

    Science.gov (United States)

    The impact of elevated ultraviolet-B radiation (UV-B, 280-320 nm) on membrane systems and lipid peroxidation, and possible involvement of active oxygen radicals was investigated in leaves of two UV-B susceptible rice cultivars (Oryza sativa L. cvs IR74 and Dular). Rice seedlings ...

  7. Ultrastructural Changes Caused by Fusarium oxysporum f. sp. lycopersici in Meloidogyne javanica Induced Giant Cells in Fusarium Resistant and Susceptible Tomato Cultivars

    Science.gov (United States)

    Fattah, F.; Webster, J. M.

    1983-01-01

    Tomato (Lycopersicon esculentum Mill.) seedlings, susceptible (cv. Pearson A-I Improved) and resistant (cv. Pearson Improved) to race 1 Fusarium oxysporum f. sp. lycopersici (Sacc.) Snyd &Hans., were inoculated with Meloidogyne javanica (Trueb) Chitwood second-stage juveniles and 3 weeks later with race 1 F. oxysporum f. sp. lycopersici spores. One week after fungal inoculation, no fungus was visible in root tissue of the tomato cultivars and the giant cells were normal. Two weeks after fungal inoculation, abundant hyphae were visible in xylem tissues of Fusarium-susceptible but not of Fusarium-resistant plants. In susceptible plants, giant cell degeneration occurred, characterized by membrane and organelle disruption. In addition, where hyphae were in direct contact with the giant cell, dissolution of the giant cell wall occurred. Three weeks after fungal inoculation, fungal hyphae and spores were visible inside xylem tissues and giant cells in Fusarium-susceptible plants and in xylem tissue of the resistant plants. In susceptible and resistant plants, giant cell degeneration was apparent. Giant cell walls were completely broken down in Fusarium-susceptible tomato plants. In both cultivars infected by Fusarium, giant cell nuclei became spherical and dark inclusions occurred within the chromatin material which condensed adjacent to the fragmented nuclear membrane. No such ultrastructural changes were seen in the giant cells of control plants inoculated with nematode alone. Giant cell deterioration in both cultivars is probably caused by toxic fungal metabolites. PMID:19295778

  8. Stylet penetration activities by Aphis craccivora (Hymenoptera: Aphididae) on plants and excised plant parts of resistant and susceptible cultivars of cowpea (Leguminosae)

    NARCIS (Netherlands)

    Annan, B.; Tingey, W.M.; Schaefers, G.A.; Tjallingii, W.F.; Backus, E.A.; Saxena, K.N.

    2000-01-01

    Direct current electrical penetration graphs (DC-EPGs) were used to analyze the stylet penetration activities of cowpea aphid, Aphis craccivora Koch, on plants of aphid-resistant (ICV-12) and aphid-susceptible (ICV-1) cultivars of cowpea, Vigna unguiculata (L.) Walpers. Aphid stylet penetration on

  9. Cell wall-related genes studies on peach cultivars with differential susceptibility to woolliness: looking for candidates as indicators of chilling tolerance.

    Science.gov (United States)

    Genero, Melisa; Gismondi, Mauro; Monti, Laura L; Gabilondo, Julieta; Budde, Claudio O; Andreo, Carlos S; Lara, María V; Drincovich, María F; Bustamante, Claudia A

    2016-06-01

    The results obtained indicate that a β-xylosidase gene may act as good indicator of chilling tolerance and provide new insights into the complex issue of peach fruit woolliness. The storage of peaches at low temperatures for prolonged periods can induce a form of chilling injury (CI) called woolliness, characterized by a lack of juiciness and a mealy texture. As this disorder has been associated with abnormal cell wall dismantling, the levels of 12 transcripts encoding proteins involved in cell wall metabolism were analysed in cultivars with contrasting susceptibility to this disorder selected from five melting flesh peach cultivars. The resistant ('Springlady') and susceptible ('Flordaking') cultivars displayed differences in the level of expression of some of the selected genes during fruit softening and in woolly versus non-woolly fruits. From these genes, the level of expression of PpXyl, which encodes for a putative β-xylosidase, was the one that presented the highest correlation (negative) with the susceptibility to woolliness. PpXyl expression was also analysed in a cultivar ('Rojo 2') with intermediate susceptibility to woolliness, reinforcing the conclusion about the correlation of PpXyl expression to the presence of woolliness symptom. Moreover, the level of expression of PpXyl correlated to protein level detected by Western blot. Analyses of the promoter region of the PpXyl gene (1637 bp) isolated from the three cultivars showed no differences suggesting that cis-elements from other regions of the genome and/or trans elements could be responsible of the differential PpXyl expression patterns. Overall, the results obtained indicate that PpXyl may act as a good indicator of woolliness tolerance and that the regulation of expression of this gene in different cultivars does not depend on sequences upstream the coding sequence.

  10. Metagenomic of Actinomycetes Based on 16S rRNA and nifH Genes in Soil and Roots of Four Indonesian Rice Cultivars Using PCR-DGGE

    Directory of Open Access Journals (Sweden)

    Mahyarudin

    2015-07-01

    Full Text Available The research was conducted to study the metagenomic of actinomycetes based on 16S ribosomal RNA (rRNA and bacterial nifH genes in soil and roots of four rice cultivars. The denaturing gradient gel electrophoresis profile based on 16S rRNA gene showed that the diversity of actinomycetes in roots was higher than soil samples. The profile also showed that the diversity of actinomycetes was similar in four varieties of rice plant and three types of agroecosystem. The profile was partially sequenced and compared to GenBank database indicating their identity with closely related microbes. The blast results showed that 17 bands were closely related ranging from 93% to 100% of maximum identity with five genera of actinomycetes, which is Geodermatophilus, Actinokineospora, Actinoplanes, Streptomyces and Kocuria. Our study found that Streptomyces species in soil and roots of rice plants were more varied than other genera, with a dominance of Streptomyces alboniger and Streptomyces acidiscabies in almost all the samples. Bacterial community analyses based on nifH gene denaturing gradient gel electrophoresis showed that diversity of bacteria in soils which have nifH gene was higher than that in rice plant roots. The profile also showed that the diversity of those bacteria was similar in four varieties of rice plant and three types of agroecosystem. Five bands were closely related with nifH gene from uncultured bacterium clone J50, uncultured bacterium clone clod-38, and uncultured bacterium clone BG2.37 with maximum identity 99%, 98%, and 92%, respectively. The diversity analysis based on 16S rRNA gene differed from nifH gene and may not correlate with each other. The findings indicated the diversity of actinomycetes and several bacterial genomes analyzed here have an ability to fix nitrogen in soil and roots of rice plant.

  11. Metagenomic of Actinomycetes Based on 16S rRNA and nifH Genes in Soil and Roots of Four Indonesian Rice Cultivars Using PCR-DGGE

    Directory of Open Access Journals (Sweden)

    Mahyarudin

    2015-07-01

    Full Text Available The research was conducted to study the metagenomic of actinomycetes based on 16S ribosomal RNA (rRNA and bacterial nifH genes in soil and roots of four rice cultivars. The denaturing gradient gel electrophoresis profile based on 16S rRNA gene showed that the diversity of actinomycetes in roots was higher than soil samples. The profile also showed that the diversity of actinomycetes was similar in four varieties of rice plant and three types of agroecosystem. The profile was partially sequenced and compared to GenBank database indicating their identity with closely related microbes. The blast results showed that 17 bands were closely related ranging from 93% to 100% of maximum identity with five genera of actinomycetes, which is Geodermatophilus, Actinokineospora, Actinoplanes, Streptomyces and Kocuria. Our study found that Streptomyces species in soil and roots of rice plants were more varied than other genera, with a dominance of Streptomyces alboniger and Streptomyces acidiscabies in almost all the samples. Bacterial community analyses based on nifH gene denaturing gradient gel electrophoresis showed that diversity of bacteria in soils which have nifH gene was higher than that in rice plant roots. The profile also showed that the diversity of those bacteria was similar in four varieties of rice plant and three types of agroecosystem. Five bands were closely related with nifH gene from uncultured bacterium clone J50, uncultured bacterium clone clod-38, and uncultured bacterium clone BG2.37 with maximum identity 99%, 98%, and 92%, respectively. The diversity analysis based on 16S rRNA gene differed from nifH gene and may not correlate with each other. The findings indicated the diversity of actinomycetes and several bacterial genomes analyzed here have an ability to fix nitrogen in soil and roots of rice plant.

  12. Acúmulo de massa seca em três cultivares de arroz irrigado com diferentes arquiteturas de plantas Dry matter accumulation by three flooded rice cultivars with different plant canopy

    Directory of Open Access Journals (Sweden)

    Juçara Terezinha Paranhos

    1995-01-01

    Full Text Available O experimento foi conduzido em Planossolo da Unidade de Mapeamento Vacacaí, com o ohjetivo de estudar o acúmulo de massa seca nos diversos órgãos da planta de três cultivares de arroz irrigado (EEA 406, Bluebelle e BR-IRGA 409, utilizando-se delineamento de blocos ao acaso com cinco repetições. A massa seca foi obtida em sete estádios fenológicos da cultura. Desconsiderando os grãos e panículas, a EEA 406 possui maior capacidade produtiva de fitomassa, sendo a Bluebelle menos produtiva. Na maturação, a cultivar BR-IRGA 409 apresentou maior massa seca total, demonstrando maior capacidade de alocar assimilados nos grãos e maior eficiência de conversão de energia solar em fitomassa, sendo a Bluebelle menos eficiente. Para as três cultivares, até a floração, o colmo acumulou a maior percentagem de massa seca sendo, a partir daí, substituído pelas panículas e grãos. O máximo acúmulo de massa seca nas raízes ocorreu por ocasião da floração, cerca de 80 dias após a emergência.This experiment was carried out in an Halbaqualf soil to study the dry matter accumulation of three flooded rice cultivars. A complete randomized block design was used, with tive replication. Plant dry matter was measured in seven different growth stages. The cultivar EEA 406 had a higherdry matter accumulation than the cultivar Bluebelle without including grain and panicle. At maturity, the BR-IRGA 409 cultivar showed higher total dry matter. This demonstrate a better capacity of this variety in alocating assimilates into grains a higher effíciency in converting solar energy into plant biomass. The Bluebelle had lower efficiency. The dry matter accumulation increased for the three varieties from seeding to flowering into colm and, from flowering to harvest into panicles and grain. The maximum dry matter accumulation in roots was observed at flowering, eighty days after emergency.

  13. Physiological analysis of leaf senescence of two rice cultivars with different yield potential Análise fisiológica da senescência foliar de duas cultivares de arroz com diferentes potenciais de produtividade

    Directory of Open Access Journals (Sweden)

    Antelmo Ralph Falqueto

    2009-07-01

    Full Text Available The objective of this work was to evaluate the physiological changes that occur in different leaves during the early and late grain-filling stages of two rice genotypes (Oryza sativa subsp. indica , BRS Pelota cultivar, and O. sativa subsp. japonica , BRS Firmeza cultivar, which present differences in grain yield potential. The plants were cultivated in greenhouse. Pigment content, chlorophyll fluorescence, electron transport and oxygen evolution rate were determined in the grain-filling stage, from the first to the forth leaf (top to bottom. Pigment content, photochemical efficiency of photosystem II and electron transport decreased significantly according to the position of leaves in 'BRS Pelota'. The BRS Firmeza cultivar shows higher pigment content and higher activity of the photosynthetic apparatus in comparison to 'BRS Pelota' during the grain-filling stage.O objetivo deste trabalho foi avaliar as mudanças fisiológicas que ocorrem em diferentes folhas durante o início e o final do estádio de enchimento de grãos em dois genótipos de arroz (Oryza sativa subsp. indica cultivar BRS Pelota e O. sativa subsp. japonica cultivar BRS Firmeza que apresentam diferenças no potencial de produção de grãos. As plantas foram cultivadas em casa de vegetação. Os teores de pigmentos, a fluorescência da clorofila e a taxa de liberação de oxigênio foram determinados no estádio de enchimento de grão da primeira à quarta folha (do topo à base. O teor de pigmentos, a eficiência fotoquímica do fotossistema II e o transporte de elétrons decresceram significativamente de acordo com a posição das folhas na cultivar BRS Pelota. A cultivar BRS Firmeza apresentou maior teor de pigmentos e maior atividade do aparato fotossintético em comparação à 'BRS Pelota' durante o estádio de enchimento de grão.

  14. Herbivore defense responses and associated herbivore defense mechanism as revealed by comparing a resistant wild soybean with a susceptible cultivar

    Directory of Open Access Journals (Sweden)

    Xiaoyi Wang

    2015-12-01

    Full Text Available Plants have evolved sophisticated defense mechanisms against herbivores to help them adapt to the environment. Understanding the defense mechanisms in plants can help us control insects in a more effective manner. In this study, we found that compared with Tianlong 2 (a cultivated soybean with insect susceptibility, ED059 (a wild soybean line with insect resistance contains sharper pubescence tips, as well as lower transcript levels of wound-induced protein kinase (WIPK and salicylic acid-induced protein kinase (SIPK, which are important mitogen-activated protein kinases involved in early defense response to herbivores. The observed lower transcript levels of WIPK and SIPK induced higher levels of jasmonic acid (JA, JA biosynthesis enzymes (AOC3 and some secondary metabolites in ED059. Functional analysis of the KTI1 gene via Agrobacterium-mediated transformation in Arabidopsis thaliana indicated that it plays an important role in herbivore defense in ED059. We further investigated the molecular response of third-instar Helicoverpa armigera (Hübner larvae to Tianlong 2 and ED059. We found apoptotic cells only in the midguts of larvae that fed on ED059. Compared with larvae reared on the susceptible cultivar Tianlong 2, transcript levels of catalase (CAT and glutathione S-transferase (GST were up-regulated, whereas those of CAR, CHSB, and TRY were down-regulated in larvae that fed on the highly resistant variety ED059. We propose that these differences underlie the different herbivore defense responses of ED059 and Tianlong 2.

  15. Red rot resistant gene characterization using RGAP markers among sugarcane cultivars resistant and susceptible to the red rot disease.

    Science.gov (United States)

    Sharma, Ruchika; Tamta, Sushma

    2017-10-01

    Sugarcane is the major source of sugar in Asia and Europe, grown primarily in the tropical and sub-tropical zones of the world. The main disease responsible for its low yield is red rot. Therefore, in the present study, characterization of red rot disease was performed among 55 different sugarcane cultivars varying in red rot resistance level. 18 fragments were found to be associated with red rot resistance and were identified as resistant specific markers. The resistant specific fragments were amplified by RGA169, RGA396, RGA129, RGA231, RGA251, RGA057, RGA118, RGA152, RGA327, RGA542, RGA012, RGA173, RGA184, RGA275, RGA019, RGA267, RGA281 and RGA533. 7 fragments were found to be associated with red rot susceptibility and were considered as susceptible specific markers amplified by RGA088, RGA162, RGA396, RGA231, RGA251, RGA087 and RGA275. Sequencing of five resistant fragments, viz., RGA169, RGA231, RGA251, RGA267 and RGA533 was performed and the data thus obtained showed 80-99% similarity when compared with other resistant gene sequences previously submitted in NCBI database.

  16. Environmental and physiological effects on grouping of drought-tolerant and susceptible rice varieties related to rice (Oryza sativa) root hydraulics under drought.

    Science.gov (United States)

    Henry, Amelia; Wehler, Regina; Grondin, Alexandre; Franke, Rochus; Quintana, Marinell

    2016-05-02

    Root hydraulic limitations (i.e. intra-plant restrictions to water movement) may be related to crop performance under drought, and groupings in the hydraulic function of drought-tolerant and drought-susceptible rice (Oryza sativa) varieties have been previously reported. This study aimed to better understand the environmental and physiological relationships with rice root hydraulics under drought. Xylem sap bleeding rates in the field (gsap g(-1)shoot) were measured on seasonal and diurnal time frames, during which time environmental conditions were monitored and physiological measurements were conducted. Complementary experiments on the effects of vapour pressure deficit (VPD) on root hydraulic conductivity and on transpiration rates of de-rooted tillers were conducted in growth chambers. The diurnal effects on bleeding rate were more closely related to irradiance than VPD, and VPD effects on root hydraulic conductivity measured on 21-day-old plants were due to effects on plant growth including root surface area, maximum root depth and root:shoot ratio. Leaf osmotic potential was related to the grouping of drought-tolerant and drought-susceptible varieties in rice root hydraulics, and these groupings were independent of differences in phenology. Low single-tiller bleeding rates were observed under high evapo-transpirational demand, higher bleeding rates were observed at more negative leaf osmotic potentials in drought-susceptible varieties, and drought-tolerant and susceptible varieties differed in the VPD-induced increase in transpiration rates of de-rooted tillers. Low root suberin amounts in some of the drought-susceptible varieties may have resulted in higher ion transport, as evidenced by higher sap K(+) concentration and higher bleeding rates in those varieties. These results provide evidence of the environmental effects on shoots that can influence root hydraulics. The consistent groupings of drought-tolerant and susceptible varieties suggest that traits

  17. Germinación, emergencia y crecimiento temprano de arroz rojo y cuatro variedades de arroz Germination, emergence and early seedling growth of red rice and four rice cultivars

    Directory of Open Access Journals (Sweden)

    Clavijo P. Jairo

    1988-12-01

    Full Text Available Varios experimentos fueron realizados con el objeto de estudiar la qerrninación, emergencia y crecimiento temprano
    del arroz rojo y cuatro variedades de arroz: Mars, Saturn, Lemont y Bellemont. El arroz rojo presentó un alto porcentaje de germina ción y fue mayor que el de Lemont, Mars y Saturno Sin embargo, cuando se midió el indice de la tasa de germinación (ITG, Saturn fue el más rápido seguido por arroz rojo. Aunque no se presentaron diferencias en el
    porcentaje de emergencia entre arroz rojo y las variedades, el índice de la tasa de ernergencia (ITE mostró que el arroz rojo ernergió primero que las variedades. La longitud de la rad ícula en el momento de la germinación y la longitud y peso seco de las raíces y tallos a los 10 días después de la emergencia fueron consideradas como caracter ísticas de
    crecimiento temprano. En todos estos parémetros, el arroz rojo obtuvo los más altos valores y fueron diferentes a los de las variédades. También se calculó la relación tallo/raíz con base en peso seco y se encontró que Saturn reportó la más alta relación seguido por arroz rojo. Estos resultados sugieren que la capacidad de interferencia que tiene el arroz rojo se debe principalmente a la alta velocidad con que germina, emerge y crece en los primeros estados de desarrollo de la
    planta.Germination, emergence and early seedling growth were analyzed for red rice and rice cultivars Mars, Saturn, Lemont
    and Bellemont. The red rice germination percentage was higher than that of Lemont, Mars and Saturno However, when the germination rate index (GRI was analyzed, Saturn had the quickest germination followed by red rice. There were no significant differences between varietal emergence percentages, but differences in the emergence rate index (ERI of red rice and the four cultivars were significant, indicating that the red rice emerged more quickly. Radicle
    length at germination and length and dry

  18. Tolerância de cultivares de arroz a diferentes níveis de alumínio em solução nutritiva Rice cultivars tolerance to different levels of aluminum in nutrient solution

    Directory of Open Access Journals (Sweden)

    Carlos Eduardo de Oliveira Camargo

    1983-01-01

    Full Text Available Em condições controladas de crescimento, foram estudados 22 cultivares de arroz, em soluções nutritivas com temperaturas de 25 ± 1°C e 30 ± 1°C, com cinco diferentes níveis de alumínio, em recipientes de 8,3 litros com 330 plântulas por recipiente. A tolerância foi medida pela capacidade de as raízes primárias continuar a crescer, em solução sem alumínio, após um período de 72 horas em solução contendo uma concentração conhecida de alumínio. Nas soluções nutritivas com temperatura de 25 ± 1°C, os cultivares IAC-899 e IR-841 foram sensíveis a 10mg/litro de Al3+; IR-43, IR-45 e IR-8, foram sensíveis a 20mg/litro de Al3+; CICA-4 e IR-42, a 40mg/litro de Al3+, e IAC-435, IAC-164, Pérola, Batatais, Pratão Precoce, Blue Bonnet, IAC-120, IAC-47, IAC-1246, IAC-25, IAC-165, Pratão, Dourado Precoce e CICA-8 foram tolerantes a 40mg/litro de Al3+. Quando foram utilizadas soluções nutritivas com temperatura de 30 ± 1°C, todos os cultivares de arroz estudados apresentaram melhor desenvolvimento radicular do que a 25 ± 1°C e se mostraram tolerantes a 5, 10 e 20mg/litro de Al3+. Com a concentração de 40mg/litro de Al3+, os cultivares Dourado Precoce, CICA-4, IR-42, IR-43, IR-45, IR-8, IAC-899, IR-665-4-5-5 e IR-841 foram sensíveis; IAC-47, Blue Bonnet, IAC-1246, IAC-164, Pratão, Pratão Precoce, CICA-8, IAC-435, IAC-120, IAC-25, IAC-165, Pérola e Batatais, tolerantes. A presença do alumínio nas soluções nutritivas foi prejudicial a todos os cultivares tolerantes e sensíveis. Os dados obtidos permitiram classificar os cultivares estudados nas seguintes classes de tolerância ao alumínio: tolerantes: IAC-435, IAC-120, IAC-47, IAC-1246, IAC-25, IAC-165, IAC-164, Pérola, Batatais, Pratão Precoce, Blue Bonnet; moderadamente tolerantes: Pratão, Dourado Precoce e CICA-8, e sensíveis: CICA-4, IR-42, IR-43, IR-45, IR-8, IAC-899, IR-665-4-5-5 e IR-841.Twenty two rice cultivars were studied in nutrient solution in

  19. Variability of Pyricularia oryzae Cav. in irrigated rice genotypes

    Directory of Open Access Journals (Sweden)

    Cley Donizeti Martins Nunes

    2014-09-01

    Full Text Available Rice blast, caused by the fungus Pyricularia oryzae Cav., is one of the most important diseases of rice. The understanding of its different strains allows a more efficient breeding towards resistant cultivars. This work aimed to determine the variability of the fungus and the prevalence of strains in irrigated rice genotypes, to evaluate the reaction of near isogenic lines of CO 39 to the collected P. oryzae isolates and to identify rice genotypes having complementary resistance genes to these isolates. The study was performed with 36 P. oryzae isolates collected in 18 irrigated rice cultivars from four counties in Rio Grande do Sul State, Brazil. A total of 21 strains were identified, with a prevalence for the IA group strains, in all collection sites, especially the IA-1 strain. A resistance reaction was observed for the cultivars BRS Firmeza, Bluebelle, Te-tep and BRS 7 (Taim, while a susceptible reaction was observed for Fanny, Dawn, BRS Pelota and BRS Atalanta. The series of near isogenic lines obtained from the CO 39 cultivar showed resistance to the isolates in the following order: C101 A51 (resistant to all isolates; C101 PKT (12; C104PKT (11; C105HP4L23 (8; and C101-LAC (3. From the studied isolates, it was concluded that there is variability of P. oryzae, prevalence of the IA strain, a higher tolerance for the cultivar BRS Firmeza and that the Pi-2 gene confers resistance to rice blast in all isolates analyzed.

  20. Pyramiding of drought yield QTLs into a high quality Malaysian rice cultivar MRQ74 improves yield under reproductive stage drought.

    Science.gov (United States)

    Shamsudin, Noraziyah Abd Aziz; Swamy, B P Mallikarjuna; Ratnam, Wickneswari; Sta Cruz, Ma Teressa; Sandhu, Nitika; Raman, Anitha K; Kumar, Arvind

    2016-12-01

    With the objective of improving the grain yield (GY) of the Malaysian high quality rice cultivar MRQ74 under reproductive stage drought stress (RS), three drought yield QTLs, viz. qDTY 2.2, qDTY 3.1 , and qDTY 12.1 were pyramided by marker assisted breeding (MAB). Foreground selection using QTL specific markers, recombinant selection using flanking markers, and background selections were performed in every generation. BC1F3 derived pyramided lines (PLs) with different combinations of qDTY 2.2, qDTY 3.1 , and qDTY 12.1 were evaluated under both RS and non-stress (NS) during the dry season (DS) of 2013 and 2014 at IRRI. The GY reductions in RS trials compared to NS trials ranged from 79 to 99 %. Plant height (PH) was reduced and days to flowering (DTF) was delayed under RS. Eleven BC1F5 MRQ74 PLs with yield advantages of 1009 to 3473 kg ha(-1) under RS and with yields equivalent to MRQ74 under NS trials were identified as promising drought tolerance PLs. Five best PLs, IR 98010-126-708-1-4, IR 98010-126-708-1-3, IR 98010-126-708-1-5, IR 99616-44-94-1-1, and IR 99616-44-94-1-2 with a yield advantage of more than 1000 kg ha(-1) under RS and with yield potential equivalent to that of MRQ74 under NS were selected. The effect of three drought grain yield QTLs under RS in MRQ74 was validated. Under NS, PLs with two qDTY combinations (qDTY 2.2 + qDTY 12.1 ) performed better than PLs with other qDTY combinations, indicating the presence of a positive interaction between qDTY 2.2 and qDTY 12.1 in the MRQ74 background. Drought tolerant MRQ74 PLs with a yield advantage of more than 1000 kg ha(-1) under RS were developed. Differential yield advantages of different combinations of the qDTYs indicate a differential synergistic relationship among qDTYs.

  1. Revealing different systems responses to brown planthopper infestation for pest susceptible and resistant rice plants with the combined metabonomic and gene-expression analysis.

    Science.gov (United States)

    Liu, Caixiang; Hao, Fuhua; Hu, Jing; Zhang, Weilin; Wan, Linglin; Zhu, Lili; Tang, Huiru; He, Guangcun

    2010-12-03

    Brown planthopper (BPH) is a notorious pest of rice plants attacking leaf sheaths and seriously affecting global rice production. However, how rice plants respond against BPH remains to be fully understood. To understand systems metabolic responses of rice plants to BPH infestation, we analyzed BPH-induced metabolic changes in leaf sheaths of both BPH-susceptible and resistant rice varieties using NMR-based metabonomics and measured expression changes of 10 relevant genes using quantitative real-time PCR. Our results showed that rice metabonome was dominated by more than 30 metabolites including sugars, organic acids, amino acids, and choline metabolites. BPH infestation caused profound metabolic changes for both BPH-susceptible and resistant rice plants involving transamination, GABA shunt, TCA cycle, gluconeogenesis/glycolysis, pentose phosphate pathway, and secondary metabolisms. BPH infestation caused more drastic overall metabolic changes for BPH-susceptible variety and more marked up-regulations for key genes regulating GABA shunt and biosynthesis of secondary metabolites for BPH-resistant variety. Such observations indicated that activation of GABA shunt and shikimate-mediated secondary metabolisms was vital for rice plants to resist BPH infestation. These findings filled the gap of our understandings in the mechanistic aspects of BPH resistance for rice plants and demonstrated the combined metabonomic and qRT-PCR analysis as an effective approach for understanding plant-herbivore interactions.

  2. Biomass saccharification is largely enhanced by altering wall polymer features and reducing silicon accumulation in rice cultivars harvested from nitrogen fertilizer supply.

    Science.gov (United States)

    Zahoor; Sun, Dan; Li, Ying; Wang, Jing; Tu, Yuanyuan; Wang, Yanting; Hu, Zhen; Zhou, Shiguang; Wang, Lingqiang; Xie, Guosheng; Huang, Jianliang; Alam, Aftab; Peng, Liangcai

    2017-11-01

    In this study, two rice cultivars were collected from experimental fields with seven nitrogen fertilizer treatments. All biomass samples contained significantly increased cellulose contents and reduced silica levels, with variable amounts of hemicellulose and lignin from different nitrogen treatments. Under chemical (NaOH, CaO, H2SO4) and physical (hot water) pretreatments, biomass samples exhibited much enhanced hexoses yields from enzymatic hydrolysis, with high bioethanol production from yeast fermentation. Notably, both degree of polymerization (DP) of cellulose and xylose/arabinose (Xyl/Ara) ratio of hemicellulose were reduced in biomass residues, whereas other wall polymer features (cellulose crystallinity and monolignol proportion) were variable. Integrative analysis indicated that cellulose DP, hemicellulosic Xyl/Ara and silica are the major factors that significantly affect cellulose crystallinity and biomass saccharification. Hence, this study has demonstrated that nitrogen fertilizer supply could largely enhance biomass saccharification in rice cultivars, mainly by reducing cellulose DP, hemicellulosic Xyl/Ara and silica in cell walls. Copyright © 2017 Elsevier Ltd. All rights reserved.

  3. Parâmetros morfológicos para estabelecer tolerância diferencial à toxicidade de alumínio em cultivares de arroz Morphological parameters to determine differential tolerance of rice cultivars to aluminium toxicity

    Directory of Open Access Journals (Sweden)

    Steel Silva Vasconcelos

    2002-03-01

    Full Text Available Dois experimentos em casa de vegetação foram conduzidos visando identificar parâmetros morfológicos ligados à tolerância ao alumínio (Al e estabelecer a concentração de Al e o tempo de cultivo suficientes para a expressão da tolerância ao Al, em duas cultivares de arroz, em solução nutritiva. Plantas de determinado comprimento radicular máximo foram transferidas para solução nutritiva com quatro concentrações de Al (0, 80, 160 e 320 mimol L-¹, a pH 4,0. Em cada coleta, foram medidos o comprimento máximo radicular, área radicular, área foliar e massa seca de raízes e parte aérea. Apenas os parâmetros morfológicos ligados ao sistema radicular possibilitaram o reconhecimento da tolerância diferencial das cultivares; a elongação radicular relativa foi a medida mais sensível. Quatro dias de exposição ao Al foram suficientes para a detecção da tolerância diferencial por meio da elongação radicular relativa. Os procedimentos estabelecidos nos experimentos podem ser utilizados para a avaliação de um número maior de cultivares.Two nutrient solution greenhouse experiments were conducted to identify morphological parameters that express Al tolerance and to determine the influence of period of plant growth and Al concentration necessary for tolerance discrimination, in two rice cultivars. Plants of known maximum root length were transferred to nutrient solution at four levels of Al (0, 80, 160 and 320 mumol L-1 with a pH 4.0. In each collection, the new maximum root length was measured in addition to root and leaf areas, and root and shoot dry weights. Only the morphological parameters related to the root system differentiated Al tolerance of the cultivars, and relative root elongation was the most sensitive. Four days of exposure to Al were sufficient to detect differences in Al tolerance by means of relative root elongation. The methods established in this study can be useful in evaluating larger number of cultivars.

  4. Identification of an isogenic semidwarf rice cultivar carrying the Green Revolution sd1 gene by multiplex codominant ASP-PCR and SSR markers.

    Science.gov (United States)

    Naito, Yoshiki; Tomita, Motonori

    2013-08-01

    The rice cultivar Hikarishinseiki, a semidwarf isogenotype of Koshihikari carrying the Green Revolution sd1 gene, is increasingly grown in both Japan and the United States. Here, we report DNA diagnosis for Hikarishinseiki targeting its Jukkoku-type sd1 locus, which codes for a defective gibberellin 20-oxidase, with a 1 bp substitution in exon 1 (Jukkoku-type GA20ox-2 mutant allele: Jukkoku_GA20ox-2). An allele-specific primer (ASP)-polymerase chain reaction (PCR) with primers SD1F3 and SD1JR gave a PCR product specific to Jukkoku_GA20ox-2. In addition, ASP-PCR with primers SD1F3 and SD1NRM (which contains a mismatch at the third nucleotide from the 3'-terminus of SD1NR) gave a PCR product specific to non-Jukkoku_GA20ox-2. Multiplex ASP-PCR using SD1F3, VIC dye-labeled SD1JR, and FAM dye-labeled SD1NRM enabled simultaneous codominant detection of Jukkoku_GA20ox-2 and non-Jukkoku_GA20ox-2 among 188 cultivars. Also, Hikarishinseiki is identifiable by RM253 polymorphism from 11 cultivars carrying Jukkoku_GA20ox-2. Taken together, our results establish a methodology for distinguishing Hikarishinseiki.

  5. Comparative Analysis of Chrysanthemum Stunt Viroid Accumulation and Movement in Two Chrysanthemum (Chrysanthemum morifolium Cultivars with Differential Susceptibility to the Viroid Infection

    Directory of Open Access Journals (Sweden)

    Tomoyuki Nabeshima

    2017-11-01

    Full Text Available Chrysanthemum stunt viroid (CSVd was inoculated into two chrysanthemum (Chrysanthemum morifolium cultivars, the CSVd-susceptible cultivar Piato and the CSVd-resistant cultivar Mari Kazaguruma. For CSVd inoculation, grafting and Agrobacterium-mediated inoculation were used. In grafting experiments, CSVd was detectable in Mari Kazaguruma after grafting onto infected Piato, but after removal of infected rootstocks, CSVd could not be detected in the uppermost leaves. In agroinfection experiments, CSVd systemic infection was observed in Piato but not in Mari Kazaguruma. However, agro-inoculated leaves of Mari Kazaguruma accumulated circular CSVd RNA to levels equivalent to those in Piato at 7 days post-inoculation. In situ detection of CSVd in inoculated leaves revealed that CSVd was absent in phloem of Mari Kazaguruma, while CSVd strongly localized to this site in Piato. We hypothesize that CSVd resistance in Mari Kazaguruma relates not to CSVd replication but to CSVd movement in leaves.

  6. Response of the leaf photosynthetic rate to available nitrogen in erect panicle-type rice (Oryza sativa L. cultivar, Shennong265

    Directory of Open Access Journals (Sweden)

    Chihiro Urairi

    2016-07-01

    Full Text Available Increasing the yield of rice per unit area is important because of the demand from the growing human population in Asia. A group of varieties called erect panicle-type rice (EP achieves very high yields under conditions of high nitrogen availability. Little is known, however, regarding the leaf photosynthetic capacity of EP, which may be one of the physiological causes of high yield. We analyzed the factors contributing to leaf photosynthetic rate (Pn and leaf mesophyll anatomy of Nipponbare, Takanari, and Shennong265 (a EP type rice cultivar varieties subjected to different nitrogen treatments. In the field experiment, Pn of Shennong265 was 33.8 μmol m−2 s−1 in the high-N treatment, and was higher than that of the other two cultivars because of its high leaf nitrogen content (LNC and a large number of mesophyll cells between the small vascular bundles per unit length. In Takanari, the relatively high value of Pn (31.5 μmol m−2 s−1 was caused by the high stomatal conductance (gs; .72 mol m−2 s−1 in the high-N treatment. In the pot experiment, the ratio of Pn/Ci to LNC, which may reflect mesophyll conductance (gm, was 20–30% higher in Nipponbare than in Takanari or Shennong265 in the high N availability treatment. The photosynthetic performance of Shennong265 might be improved by introducing the greater ratio of Pn/Ci to LNC found in Nipponbare and greater stomatal conductance found in Takanari.

  7. Arroz e trigo: tolerância à salinidade em solução nutritiva Tolerance of rice and wheat cultivars to salinity

    Directory of Open Access Journals (Sweden)

    José Guilherme de Freitas

    1988-01-01

    , com base nas variações das porcentagens diárias médias do comprimento das raízes seminais ao cloreto de sódio, os cultivares de arroz foram classificados em tolerantes: IAC-165, Pratão Precoce, Dourado Precoce, IAC-1 64 e IAC-1 20; moderadamente tolerantes: IAC-1246, Pérola, IAC-25, Batatais e IAC-47; moderadamente sensíveis: IAC-899, IAC-435, IAC-4440 e IR-841, e sensível: IAC-1278. Para o trigo foram considerados como os mais tolerantes os cultivares IAS-55 e Siete Cerros.The water stress and the salinity in the soil are the most important causes of low grain yield of rice and wheat in Brazil, when cultivated on upland conditions. Selection for new cultivars showing tolerance to salt effects seems to be one of the methods to solve this problem. The osmotic agent usually used to this purpose is sodium chloride. One experiment was conducted in laboratory conditions using nutrient solutions. The rice genotypes utilized were: upland cultivars IAC-25, IAC-47, IAC-164, IAC-165, IAC-1246, Batatais, Dourado Precoce, Pérola and Pratão Precoce; and irrigated cultivars IAC-120, IAC-435, IAC-899, IAC-1278, IAC-4440 and IR-841. The wheat genotypes utilizated were: upland cultivars IAC-5, IAS-55, Siete Cerros and Paraguay-281. Nutrient solutions aeration and light for the seedlings were provided continuously. Six levels of sodium chloride (0.0, 0.1, 0.2, 0.3, 0.4 and 0.8 molal or osmotic potentials of 0.00, -0.47, -0.93, -1.39, -1.85 and -3.75 MPa were applied int the nutrient solutions. The plastic pots containing the treatment solutions were placed in waterbath with temperature of 30 ± 1°C, for rice, and 25 ± 1°C, for wheat. The rice and wheat seedlings were cultivated during 48 hours in distilled water and after this period -they were changed to pots, containing nutrient solutions with different sodium chloride concentrations and pH = 6.0. The rice plants were cultivated during twelve days and the wheat plants, ten days. The longest seminal root lengths, the

  8. Integrative Analysis of the microRNAome and Transcriptome Illuminates the Response of Susceptible Rice Plants to Rice Stripe Virus.

    Directory of Open Access Journals (Sweden)

    Jian Yang

    Full Text Available Rice stripe virus (RSV is one of the most serious rice viruses in East Asia. To investigate how rice responds to RSV infection, we integrated miRNA expression with parallel mRNA transcription profiling by deep sequencing. A total of 570 miRNAs were identified of which 69 miRNAs (56 up-regulated and 13 down-regulated were significantly modified by RSV infection. Digital gene expression (DGE analysis showed that 1274 mRNAs (431 up-regulated and 843 down-regulated genes were differentially expressed as a result of RSV infection. The differential expression of selected miRNAs and mRNAs was confirmed by qRT-PCR. Gene ontology (GO and pathway enrichment analysis showed that a complex set of miRNA and mRNA networks were selectively regulated by RSV infection. In particular, 63 differentially expressed miRNAs were found to be significantly and negatively correlated with 160 target mRNAs. Interestingly, 22 up-regulated miRNAs were negatively correlated with 24 down-regulated mRNAs encoding disease resistance-related proteins, indicating that the host defense responses were selectively suppressed by RSV infection. The suppression of both osa-miR1423-5p- and osa-miR1870-5p-mediated resistance pathways was further confirmed by qRT-PCR. Chloroplast functions were also targeted by RSV, especially the zeaxanthin cycle, which would affect the stability of thylakoid membranes and the biosynthesis of ABA. All these modifications may contribute to viral symptom development and provide new insights into the pathogenicity mechanisms of RSV.

  9. Studies on the Accumulation of Drought-Induced Boiling Soluble Proteins (Hydrophilins at Vegetative and Reproductive Phases of Drought Tolerant and Susceptible Cultivars of Triticum aestivum

    Directory of Open Access Journals (Sweden)

    Gurmeen RAKHRA

    2014-06-01

    Full Text Available Drought is one of the major environmental constraints affecting the crops worldwide. Expression of boiling soluble proteins (BSPs is of paramount importance, because they play important roles in the water stress responses and also in plant metabolism. In this study, the effect of drought on BSPs at vegetative (shoots and reproductive (seeds phases of drought tolerant (cv. ‘PBW 527’ and drought susceptible (cv. ‘PBW 343’ cultivars of Triticumaestivum were carried at three different developmental stages. The boiling soluble protein profiles of shoots and seeds were outlined via SDS-PAGE followed by immune-blot analysis using anti-HSP, anti-APase, anti-LEA, anti-SOD, anti-AQUA and anti-CAT antibodies. Western blot analysis revealed that expression of BSPs was modulated differentially in a stress, tissue, developmental stage and cultivar dependent manner. For instance, enhanced expression of seeds BSPs (APase, LEA, CAT, AQUA was observed in the tolerant cv. ‘PBW 527’ after drought stress. However, no such enhancement was observed in the susceptible cultivar. Similarly, in shoots of cv. ‘PBW 527’, a substantial increase of BSP (SOD expression was established after drought stress treatment, indicating their role in drought stress adaptation. Further, to gain an insight into the role of BSPs, a time course pre- and post-stress kinetic studies were also conducted in the seeds of tolerant and susceptible wheat cultivars. Based upon the observations, the possible role of boiling soluble proteins (hydrophilins in water stress tolerance is discussed.

  10. Root-Derived Short-Chain Suberin Diacids from Rice and Rape Seed in a Paddy Soil under Rice Cultivar Treatments

    National Research Council Canada - National Science Library

    Ji, Haishi; Ding, Yuanjun; Liu, Xiaoyu; Li, Lianqing; Zhang, Dengxiao; Li, Zichuan; Sun, Jingling; Lashari, Muhammad Siddique; Joseph, Stephen; Meng, Yuanduo; Kuzyakov, Yakov; Pan, Genxing

    2015-01-01

    ... with saponification and derivatization before analysis using gas chromatography-mass spectrometry (GC-MS). Diacids C16 and C18 in bound lipids were detected both in rice and rape root samples, while diacids C20 and C22 were detected only in rape root samples...

  11. Screening and Expression of a Silicon Transporter Gene (Lsi1) in Wild-Type Indica Rice Cultivars

    Science.gov (United States)

    Abiri, Rambod; Kalhori, Nahid; Atabaki, Narges

    2017-01-01

    Silicon (Si) is one of the most prevalent elements in the soil. It is beneficial for plant growth and development, and it contributes to plant defense against different stresses. The Lsi1 gene encodes a Si transporter that was identified in a mutant Japonica rice variety. This gene was not identified in fourteen Malaysian rice varieties during screening. Then, a mutant version of Lsi1 was substituted for the native version in the three most common Malaysian rice varieties, MR219, MR220, and MR276, to evaluate the function of the transgene. Real-time PCR was used to explore the differential expression of Lsi1 in the three transgenic rice varieties. Silicon concentrations in the roots and leaves of transgenic plants were significantly higher than in wild-type plants. Transgenic varieties showed significant increases in the activities of the enzymes SOD, POD, APX, and CAT; photosynthesis; and chlorophyll content; however, the highest chlorophyll A and B levels were observed in transgenic MR276. Transgenic varieties have shown a stronger root and leaf structure, as well as hairier roots, compared to the wild-type plants. This suggests that Lsi1 plays a key role in rice, increasing the absorption and accumulation of Si, then alters antioxidant activities, and improves morphological properties. PMID:28191468

  12. Sequestration of As by iron plaque on the roots of three rice (Oryza sativa L.) cultivars in a low-P soil with or without P fertilizer.

    Science.gov (United States)

    Hu, Y; Li, J-H; Zhu, Y-G; Huang, Y-Z; Hu, H-Q; Christie, P

    2005-04-01

    A pot experiment was carried out in a greenhouse to investigate the sequestration of As in iron plaques on root surface of three rice (Oryza sativa L.) cultivars. Phosphate (P) fertilization increased both plant biomass and tissue P concentrations significantly, indicating that the soils used in this study was highly P-deficient. Results from this study confirmed that low P supply improved the formation of iron plaque on rice roots. As a consequence, arsenic (As) concentrations in DCB-extracts with no P addition were significantly higher than those with P fertilization. Arsenic was highly sequestrated in iron plaque; arsenic concentration in iron was up to nearly 120 mg kg(-1), while arsenic concentrations in roots were just several mg kg(-1). Both arsenic and phosphate concentrations in iron plaque were highly positively correlated with the amounts of iron plaque (DCB-extractable Fe). Contrary to normal understanding that increasing P supply could reduced As accumulation in plants, results from the present study showed that P fertilization did not inhibit the As uptake by plants (As accumulation in aboveground), which was probably due to the fact that iron plaque formation was improved under low P conditions, thus leading to more As sequestration in the iron plaque. Thus results obtained in this study indicated that the iron plaque may inhibit the transfer of As from roots to shoots, and thus alter the P-As interaction in plant As uptake processes.

  13. Cooked rice texture and rice flour pasting properties; impacted by rice temperature during milling

    OpenAIRE

    Saleh, Mohammed; Meullenet, Jean-Francois

    2013-01-01

    Rice milling plays a key factor in determining rice quality and value. Therefore accurate quality assessments are critical to the rice industry. This study was undertaken to assess the effect of exposing rice to elevated temperatures during milling, on cooked rice texture and rice flour pasting properties. Two long (Cybonnett and Francis) and one medium (Jupiter) rice (oryzae sativa L.) cultivars were milled using McGill laboratory mill for 30 and 40 s after warmed up the mill before milling....

  14. Spikelet-specific variation in ethylene production and constitutive expression of ethylene receptors and signal transducers during grain filling of compact- and lax-panicle rice (Oryza sativa) cultivars.

    Science.gov (United States)

    Sekhar, Sudhanshu; Panda, Binay B; Mohapatra, Trupti; Das, Kaushik; Shaw, Birendra P; Kariali, Ekamber; Mohapatra, Pravat K

    2015-05-01

    Grain yields in modern super rice cultivars do not always meet the expectations because many spikelets are located on secondary branches in closely packed homogeneous distribution in these plants, and they do not fill properly. The factors limiting grain filling of such spikelets, especially in the lower panicle branches, are elusive. Two long-duration rice cultivars differing in panicle density, Mahalaxmi (compact) and Upahar (lax), were cultivated in an open field plot. Grain filling, ethylene production and constitutive expression of ethylene receptors and ethylene signal transducers in apical and basal spikelets of the panicle were compared during the early post-anthesis stage, which is the most critical period for grain development. In another experiment, a similar assessment was made for the medium-duration cultivars compact-panicle OR-1918 and lax-panicle Lalat. Grain weight of the apical spikelets was always higher than that of the basal spikelets. This gradient of grain weight was wide in the compact-panicle cultivars and narrow in the lax-panicle cultivars. Compared to apical spikelets, the basal spikelets produced more ethylene at anthesis and retained the capacity for post-anthesis expression of ethylene receptors and ethylene signal transducers longer. High ethylene production enhanced the expression of the RSR1 gene, but reduced expression of the GBSS1 gene. Ethylene inhibited the partitioning of assimilates of developing grains resulting in low starch biosynthesis and high accumulation of soluble carbohydrates. It is concluded that an increase in grain/spikelet density in rice panicles reduces apical dominance to the detriment of grain filling by production of ethylene and/or enhanced perception of the ethylene signal. Ethylene could be a second messenger for apical dominance in grain filling. The manipulation of the ethylene signal would possibly improve rice grain yield. Copyright © 2015 Elsevier GmbH. All rights reserved.

  15. Greenhouse validation of yield component transgressive variation effects of wild Oryza species introgressions in an elite US rice cultivar

    Science.gov (United States)

    A number of global studies have been conducted which have shown that the wild ancestral species, Oryza rufipogon, possesses beneficial alleles that can be used to improve cultivated rice, O. sativa, for biotic and abiotic stress tolerance as well as yield. Introgression lines (IL) were developed thr...

  16. Cultivar specific plant-soil feedback overrules soil legacy effects of elevated ozone in a rice-wheat rotation system

    NARCIS (Netherlands)

    Li, Qi; Yang, Yue; Bao, Xuelian; Zhu, Jianguo; Liang, Wenju; Bezemer, T. Martijn

    2016-01-01

    Abstract Tropospheric ozone has been recognized as one of the most important air pollutants. Many studies have shown that elevated ozone negatively impacts yields of important crops such as wheat or rice, but how ozone influences soil ecosystems of these crops and plant growth in rotation systems is

  17. Marker-Assisted Selection of Xa21 Conferring Resistance to Bacterial Leaf Blight in indica Rice Cultivar LT2

    Directory of Open Access Journals (Sweden)

    Hue Thi Nguyen

    2018-01-01

    Full Text Available Bacterial leaf blight of rice (BLB, caused by Xanthomonas oryzae pv. oryzae, is one of the most destructive diseases in Asian rice fields. A high-quality rice variety, LT2, was used as the recipient parent. IRBB21, which carries the Xa21 gene, was used as the donor parent. The resistance gene Xa21 was introduced into LT2 by marker-assisted backcrossing. Three Xoo races were used to inoculate the improved lines following the clipping method. Eleven BC3F3 lines carrying Xa21 were obtained based on molecular markers and agronomic performance. The 11 lines were then inoculated with the three Xoo races. All the 11 improved lines showed better resistance to BLB than the recipient parent LT2. Based on the level of resistance to BLB and their agronomic performance, five lines (BC3F3 5.1.5.1, BC3F3 5.1.5.12, BC3F3 8.5.6.44, BC3F3 9.5.4.1 and BC3F3 9.5.4.23 were selected as the most promising for commercial release. These improved lines could contribute to rice production in terms of food security.

  18. silencing COI1 in rice increases susceptibility to chewing insects and impairs inducible defense.

    Directory of Open Access Journals (Sweden)

    Mao Ye

    Full Text Available The jasmonic acid (JA pathway plays a key role in plant defense responses against herbivorous insects. CORONATINE INSENSITIVE1 (COI1 is an F-box protein essential for all jasmonate responses. However, the precise defense function of COI1 in monocotyledonous plants, especially in rice (Oryza sativa L. is largely unknown. We silenced OsCOI1 in rice plants via RNA interference (RNAi to determine the role of OsCOI1 in rice defense against rice leaf folder (LF Cnaphalocrocis medinalis, a chewing insect, and brown planthopper (BPH Nilaparvata lugens, a phloem-feeding insect. In wild-type rice plants (WT, the transcripts of OsCOI1 were strongly and continuously up-regulated by LF infestation and methyl jasmonate (MeJA treatment, but not by BPH infestation. The abundance of trypsin protease inhibitor (TrypPI, and the enzymatic activities of polyphenol oxidase (PPO and peroxidase (POD were enhanced in response to both LF and BPH infestation, but the activity of lipoxygenase (LOX was only induced by LF. The RNAi lines with repressed expression of OsCOI1 showed reduced resistance against LF, but no change against BPH. Silencing OsCOI1 did not alter LF-induced LOX activity and JA content, but it led to a reduction in the TrypPI content, POD and PPO activity by 62.3%, 48.5% and 27.2%, respectively. In addition, MeJA-induced TrypPI and POD activity were reduced by 57.2% and 48.2% in OsCOI1 RNAi plants. These results suggest that OsCOI1 is an indispensable signaling component, controlling JA-regulated defense against chewing insect (LF in rice plants, and COI1 is also required for induction of TrypPI, POD and PPO in rice defense response to LF infestation.

  19. Peculiar ultrastructural characteristics of fungal cells and of other elements apposed to and in vessel walls in plants of a susceptible carnation cultivar, infected with Fusarium oxysporum f.sp dianthi race 2

    NARCIS (Netherlands)

    Ouellette, G.B.; Baayen, R.P.; Rioux, D.; Simard, M.

    2004-01-01

    Uncommon, opaque particles (of approximately 20-22 nm, referred to as OP), aggregating into paracrystalloids occurred only next to colonized cells in carnation plants of either a susceptible or resistant cultivar (cv.) infected with Fusarium oxysporum f.sp. dianthi. In the susceptible plant, those

  20. Tolerância de cultivares de arroz em estádio de plântula a diferentes níveis de ferro em solução nutritiva Tolerance of rice cultivars in seedling stage to different levels of iron in nutrient solution

    Directory of Open Access Journals (Sweden)

    Carlos Eduardo de Oliveira Camargo

    1984-01-01

    Full Text Available Foram estudados sete cultivares de arroz em soluções nutritivas, sem arejamento, contendo quatro níveis de ferro (0,56; 100; 200 e 400mg/litro, mantendo-se constante a temperatura das soluções de 30±1°C, e o pH, 4,0. A tolerância foi medida pelo comprimento médio da raiz primária e pelo peso seco total da parte aérea de vinte plântulas cultivadas durante dez dias em soluções nutritivas contendo diferentes concentrações de ferro. A presença das doses elevadas de ferro (100, 200 e 400mg/litro foi prejudicial a todos os cultivares estudados, os quais mostraram sintomas típicos de toxicidade de ferro, dependendo em intensidade do grau de tolerância de cada um. Os teores de ferro (ppm aumentaram na parte aérea de todos os cultivares, em função do aumento das concentrações de ferro nas soluções nutritivas. A maior tolerância do Pérola pareceu ser devida a uma menor absorção de ferro das soluções em comparação com os outros cultivares estudados. A presença de altos teores de ferro na parte aérea dos cultivares, com reações intermediárias e sensíveis a doses crescentes desse elemento nas soluções, indicou que suas respostas seriam devidas a uma maior ou menor tolerância às altas concentrações de ferro no interior das folhas, e não a uma maior ou menor absorção desse elemento das soluções.Seven rice cultivars were studied to iron toxicity using four different levels of this element (0.56; 100; 200 and 400mg/l in nutrient solution, without aeration, under constant temperature (30±1°C and pH 4.0. The tolerance of the plants was measured taking into account the mean of the primary root length and the total leaf dry weight of 20 seedlings per treatment solution. The presence of high levels of iron (100; 200 and 400mg/l in the solutions produced harmfull effects on all rice cultivars studied. The plants showed typical iron toxicity symptom which varied with the degree of tolerance of each cultivar. The rice

  1. A Novel Tiller Angle Gene, TAC3, together with TAC1 and D2 Largely Determine the Natural Variation of Tiller Angle in Rice Cultivars

    Science.gov (United States)

    Dong, Haijiao; Zhao, Hu; Xie, Weibo; Han, Zhongmin; Li, Guangwei; Yao, Wen; Bai, Xufeng; Hu, Yong; Guo, Zilong; Lu, Kai; Yang, Lin; Xing, Yongzhong

    2016-01-01

    Tiller angle is one of the most important components of the ideal plant architecture that can greatly enhance rice grain yield. Understanding the genetic basis of tiller angle and mining favorable alleles will be helpful for breeding new plant-type varieties. Here, we performed genome-wide association studies (GWAS) to identify genes controlling tiller angle using 529 diverse accessions of Oryza sativa including 295 indica and 156 japonica accessions in two environments. We identified 7 common quantitative trait loci (QTLs), including the previously reported major gene Tiller Angle Control 1 (TAC1), in the two environments, 10 and 13 unique QTLs in Hainan and Wuhan, respectively. More QTLs were identified in indica than in japonica, and three major QTLs (qTA3, qTA1b/DWARF2 (D2) and qTA9c/TAC1) were fixed in japonica but segregating in indica, which explained the wider variation observed in indica compared with that in japonica. No common QTLs were identified between the indica and japonica subpopulations. Mutant analysis for the candidate gene of qTA3 on chromosome 3 indicated a novel gene, Tiller Angle Control 3 (TAC3), encoding a conserved hypothetical protein controlling tiller angle. TAC3 is preferentially expressed in the tiller base. The ebisu dwarf (d2) mutant exhibited a decreased tiller angle, in addition to its previously described abnormal phenotype. A nucleotide diversity analysis revealed that TAC3, D2 and TAC1 have been subjected to selection during japonica domestication. A haplotype analysis identified favorable alleles of TAC3, D2 and TAC1, which may be used for breeding plants with an ideal architecture. In conclusion, there is a diverse genetic basis for tiller angle between the two subpopulations, and it is the novel gene TAC3 together with TAC1, D2, and other newly identified genes in this study that controls tiller angle in rice cultivars. PMID:27814357

  2. Differential gene expression in gall midge susceptible rice genotypes revealed by suppressive subtraction hybridization (SSH) cDNA libraries and microarray analysis.

    Science.gov (United States)

    Rawat, Nidhi; Neeraja, Chiruvuri Naga; Nair, Suresh; Bentur, Jagadish S

    2012-12-01

    A major pest of rice, the Asian rice gall midge (Orseolia oryzae Wood-Mason), causes significant yield losses in the rice growing regions throughout Asia. Feeding by the larvae induces susceptible plants to produce nutritive tissue to support growth and development. In order to identify molecular signatures during compatible interactions, genome wide transcriptional profiling was performed using SSH library and microarray technology. Results revealed up-regulation of genes related to primary metabolism, nutrient relocation, cell organization and DNA synthesis. Concomitantly, defense, secondary metabolism and signaling genes were suppressed. Further, real-time PCR validation of a selected set of 20 genes, in three susceptible rice varieties (TN1, Kavya and Suraksha) during the interaction with the respective virulent gall midge biotypes, also revealed variation in gene expression in Kavya as compared to TN1 and Suraksha. These studies showed that virulent insects induced the plants to step up metabolism and transport nutrients to their feeding site and suppressed defense responses. But Kavya rice mounted an elevated defense response during early hours of virulent gall midge infestation, which was over-powered later, resulting in host plant susceptibility.

  3. Drought and Heat Differentially Affect XTH Expression and XET Activity and Action in 3-Day-Old Seedlings of Durum Wheat Cultivars with Different Stress Susceptibility.

    Science.gov (United States)

    Iurlaro, Andrea; De Caroli, Monica; Sabella, Erika; De Pascali, Mariarosaria; Rampino, Patrizia; De Bellis, Luigi; Perrotta, Carla; Dalessandro, Giuseppe; Piro, Gabriella; Fry, Stephen C; Lenucci, Marcello S

    2016-01-01

    Heat and drought stress have emerged as major constraints for durum wheat production. In the Mediterranean area, their negative effect on crop productivity is expected to be exacerbated by the occurring climate change. Xyloglucan endotransglucosylase/hydrolases (XTHs) are chief enzymes in cell wall remodeling, whose relevance in cell expansion and morphogenesis suggests a central role in stress responses. In this work the potential role of XTHs in abiotic stress tolerance was investigated in durum wheat. The separate effects of dehydration and heat exposure on XTH expression and its endotransglucosylase (XET) in vitro activity and in vivo action have been monitored, up to 24 h, in the apical and sub-apical root regions and shoots excised from 3-day-old seedlings of durum wheat cultivars differing in stress susceptibility/tolerance. Dehydration and heat stress differentially influence the XTH expression profiles and the activity and action of XET in the wheat seedlings, depending on the degree of susceptibility/tolerance of the cultivars, the organ, the topological region of the root and, within the root, on the gradient of cell differentiation. The root apical region was the zone mainly affected by both treatments in all assayed cultivars, while no change in XET activity was observed at shoot level, irrespective of susceptibility/tolerance, confirming the pivotal role of the root in stress perception, signaling, and response. Conflicting effects were observed depending on stress type: dehydration evoked an overall increase, at least in the apical region of the root, of XET activity and action, while a significant inhibition was caused by heat treatment in most cultivars. The data suggest that differential changes in XET action in defined portions of the root of young durum wheat seedlings may have a role as a response to drought and heat stress, thus contributing to seedling survival and crop establishment. A thorough understanding of the mechanisms underlying

  4. Effects of nitrogen fertilization strategies on nitrogen use efficiency in physiology, recovery, and agronomy and redistribution of dry matter accumulation and nitrogen accumulation in two typical rice cultivars in Zhejiang, China.

    Science.gov (United States)

    Xie, Wen-xia; Wang, Guang-huo; Zhang, Qi-chun; Guo, Hai-chao

    2007-03-01

    Field experiments were conducted in farmers' rice fields in 2001 and 2002 to study the effects of nitrogen (N) management strategies on N use efficiency in recovery (RE), agronomy (AE) and physiology (PE) and redistribution of dry matter accumulation (DMA) and nitrogen accumulation (NA) in two typical rice cultivars in Jinhua, Zhejiang Province. This study aimed mainly at identifying the possible causes of poor fertilizer N use efficiency (NUE) of rice in Zhejiang by comparing farmers' fertilizer practice (FFP) with advanced site-specific nutrient management (SSNM) and real-time N management (RTNM). The results showed that compared to FFP, SSNM and RTNM reduced DMA and NA before panicle initiation and increased DMA and NA at post-flowering. There is no significant difference between SSNM and FFP in post-flowering dry matter redistribution (post-DMR) and post-flowering nitrogen redistribution (post-NR). These results suggest that high input rate of fertilizer N and improper fertilizer N timing are the main factors causing low NUE of irrigated rice in the farmer's routine practice of Zhejiang. With SSNM, about 15% of the current total N input in direct-seeding early rice and 45% in single rice could be reduced without yield loss in Zhejiang, China.

  5. Over-expression in the nucleotide-binding site-leucine rich repeat gene DEPG1 increases susceptibility to bacterial leaf streak disease in transgenic rice plants.

    Science.gov (United States)

    Guo, Lijia; Li, Min; Wang, Wujing; Wang, Lijuan; Hao, Guojing; Guo, Chiming; Chen, Liang

    2012-04-01

    Bacterial leaf streak of rice (BLS) caused by Xanthomonas oryzae pv. oryzicola (Xoc) is a widely-spread disease in the main rice-producing areas of the world. Investigating the genes that play roles in rice-Xoc interactions helps us to understand the defense signaling pathway in rice. Here we report a differentially expressed protein gene (DEPG1), which regulates susceptibility to BLS. DEPG1 is a nucleotide-binding site (NBS)-leucine rich repeat (LRR) gene, and the deduced protein sequence of DEPG1 has approximately 64% identity with that of the disease resistance gene Pi37. Phylogenetic analysis of DEPG1 and the 18 characterized NBS-LRR genes revealed that DEPG1 is more closely related to Pi37. DEPG1 protein is located to the cytoplasm, which was confirmed by transient expression of DEPG1-GFP (green fluorescent protein) fusion construct in onion epidermal cells. Semi-quantitative PCR assays showed that DEPG1 is widely expressed in rice, and is preferentially expressed in internodes, leaf blades, leaf sheaths and flag leaves. Observation of cross sections of leaves from the transgenic plants with a DEPG1-promoter::glucuronidase (GUS) fusion gene revealed that DEPG1 is also highly expressed in mesophyll tissues where Xoc mainly colonizes. Additionally, Xoc negatively regulates expression of DEPG1 at the early stage of the pathogen infection, and so do the three defense-signal compounds including salicylic acid (SA), methyl jasmonate (MeJA) and 1-aminocyclopropane-1-carboxylic-acid (ACC). Transgenic rice plants overexpressing DEPG1 exhibit enhanced susceptibility to Xoc compared to the wild-type controls. Moreover, enhanced susceptibility to Xoc may be mediated by inhibition of the expression of some SA biosynthesis-related genes and pathogenesis-related genes that may contribute to the disease resistance. Taken together, DEPG1 plays roles in the interactions between rice and BLS pathogen Xoc.

  6. Silicon content in the shoots of upland rice cultivars as affected by the application of silicate and limestone in the soilAcúmulo de silício na parte aérea de cultivares de arroz de terras altas afetado pela aplicação de silicato e carbonato no solo

    Directory of Open Access Journals (Sweden)

    Munir Mauad

    2013-10-01

    Full Text Available Even the element silicon being the most uptake by rice plant, many benefit effect like: increase of pest and disease tolerance, decrease of lost of water by transpiration and better the leaf architecture becoming the leafs more erect, resulting as well at the better photosynthesis efficacy. There is not too much knowledge about the uptake march in upland rice plants. This study aimed to evaluate the content of silicon in two upland rice cultivars by the influence of the application of silicate and limestone at the soil. The experiment was carried in Hapludox soil in a completely randomized experimental design in 2x2x7 factorial scheme in four replications. The treatments were consisted of calcium silicate fertilizer and limestone in interaction with seven period of physiological stage, using the upland rice cultivars Caiapó and Maravilha. At the cultivar Maravilha Si accumulation begin from tillering and achieve it better value at the microsporogenesis, while the Caiapó cultivar, occurs between tillering until the mily grain. Caiapó shows efficient Si accumulation when it was supplied to the soil. Plant organs that more accumulated silicon in both upland rice cultivars followed decreased order: stem > leaf > panicle.O silício é o elemento mais absorvido pela planta de arroz com diversos efeitos benéficos como: aumento da tolerância a pragas e doenças, redução da perda de água por transpiração e melhorias na arquitetura foliar tornando as folhas mais eretas, resultando também na melhoria da eficiência fotossintética. Pouco se conhece a respeito da marcha de absorção em plantas de arroz de terra altas. O trabalho teve o objetivo de avaliar o acúmulo de silício em duas cultivares de arroz de terras altas em função da aplicação de silicato e carbonato no solo. O trabalho foi realizado em casa de vegetação em Latossolo Vermelho distroférrico, utilizando delineamento inteiramente casualizado em esquema fatorial 2 x 2 x 7

  7. Changes in root hydraulic conductivity facilitate the overall hydraulic response of rice (Oryza sativa L.) cultivars to salt and osmotic stress.

    Science.gov (United States)

    Meng, Delong; Fricke, Wieland

    2017-04-01

    The aim of the present work was to assess the significance of changes in root AQP gene expression and hydraulic conductivity (Lp) in the regulation of water balance in two hydroponically-grown rice cultivars (Azucena, Bala) which differ in root morphology, stomatal regulation and aquaporin (AQP) isoform expression. Plants were exposed to NaCl (25 mM, 50 mM) and osmotic stress (5%, 10% PEG6000). Root Lp was determined for exuding root systems (osmotic forces driving water uptake; 'exudation Lp') and transpiring plants (hydrostatic forces dominating; 'transpiration-Lp'). Gene expression was analysed by qPCR. Stress treatments caused a consistent and significant decrease in plant growth, transpirational water loss, stomatal conductance, shoot-to-root surface area ratio and root Lp. Comparison of exudation-with transpiration-Lp supported a significant contribution of AQP-facilitated water flow to root water uptake. Changes in root Lp in response to treatments were correlated much stronger with root morphological characteristics, such as the number of main and lateral roots, surface area ratio of root to shoot and plant transpiration rate than with AQP gene expression. Changes in root Lp, involving AQP function, form an integral part of the plant hydraulic response to stress and facilitate changes in the root-to-shoot surface area ratio, transpiration and stomatal conductance. Copyright © 2017 Elsevier Masson SAS. All rights reserved.

  8. Grain quality of upland rice cultivars in response to cropping systems in the Brazilian tropical savanna Qualidade de grãos de cultivares de arroz de terras altas em função do sistema de cultivo na região do cerrado brasileiro

    Directory of Open Access Journals (Sweden)

    Carlos Alexandre Costa Crusciol

    2008-01-01

    Full Text Available The industrial quality of grain is an important parameter to determine the commercial value of rice and can be influenced by water availability and type of cultivar. The present study aimed to evaluate the milling yield as well as the protein and nutrient contents of polished grains originated from two upland rice cultivars grown under rainfed and sprinkler-irrigated conditions. A randomized block design was used in a split-plot arrangement with eight replicates. Plots consisted of two cropping systems (rainfed and sprinkler-irrigated with subplots consisting of two cultivars recommended for upland ecosystems (IAC 201 and Carajás. The sprinkler irrigation system increased upland rice milling (8.0% and head rice yield (23.7%, for years with hot and dry weather spells occurring during the reproductive and maturation stages. Under conditions of lower water availability, the Carajás cultivar showed a milled yield value 5.1% higher than that of cultivar IAC 201. Lower water availability provided increases in protein, N, P, Ca, Mg, Fe, and Zn contents but reductions in S and Cu in the polished grains. Cultivars IAC 201 and Carajás had similar nutrient contents in the polished grains.A qualidade industrial do grão beneficiado é parâmetro importante para determinar o valor de comercialização do arroz e pode estar relacionada com a disponibilidade hídrica e o cultivar utilizado. O trabalho teve como objetivo avaliar o rendimento de engenho e teores de nutrientes e proteínas nos grãos brunidos provenientes de dois cultivares de arroz de terras altas conduzidos sob condições de sequeiro e irrigados por aspersão. O delineamento experimental utilizado foi o de blocos ao acaso, em esquema de parcela subdividida, com oito repetições. As parcelas foram constituídas por dois sistemas de cultivo (sequeiro e irrigado por aspersão e as subparcelas por dois cultivares indicados para o ecossistema de terras altas (IAC 201 e Carajás. A irriga

  9. Absorção e redução de nitrato em duas cultivares de arroz na presença de alumínio Uptake and reduction of nitrate in two rice cultivars in the presence of aluminum

    Directory of Open Access Journals (Sweden)

    Gilberto Costa Justino

    2006-08-01

    Full Text Available O objetivo deste trabalho foi estudar os efeitos do alumínio (Al sobre a absorção e a redução de nitrato, em duas cultivares de arroz: Fernandes (tolerante e Maravilha (sensível, expostas a 0 e 500 µM de Al. Depois de 21 dias de crescimento, foram determinados o comprimento, a produção de matéria seca, os teores de Al e de nitrato e a atividade in vitro da redutase do nitrato (RN, nas raízes e na parte aérea, bem como as constantes cinéticas de absorção de nitrato pelas raízes. O Al reduziu o crescimento em comprimento e a produção de matéria seca, nas duas partes das plantas, apenas da cultivar Maravilha. Os teores de Al aumentaram nas raízes e parte aérea das plantas nas duas cultivares, enquanto o teor de nitrato sofreu redução apenas nas raízes da cultivar Maravilha. A Vmax não se modificou, enquanto o Km da absorção de nitrato diminuiu cerca de 11% na cultivar Fernandes e aumentou 310% na Maravilha. Em presença de Al, houve redução na atividade da RN nas raízes das duas cultivares, e na parte aérea apenas da cultivar Maravilha. A cultivar tolerante foi mais eficiente na absorção e na redução de nitrato, o que indica que esses processos são importantes componentes da tolerância ao Al em arroz.The objective of this work was to evaluate the effects of Al on the nitrate uptake and reduction in two rice cultivars, Fernandes (Al tolerant and Maravilha (Al sensitive, exposed to 0 and 500 µM Al. After 21 days of Al treatment, growth in size and dry matter yield, Al and nitrate contents and in vitro nitrate reductase activity (NR in the tops and roots, and the kinetic constants of root nitrate uptake were determined. Aluminum reduced the growth and dry matter yield of both plant parts only in the Maravilha cultivar. Aluminum content increased in the tops and roots of both cultivars, while nitrate content decreased only in the roots of Maravilha cultivar. Vmax did not change, while Km of the nitrate uptake

  10. Influência de cultivares, densidades de semeadura e doses de nitrogênio na produção integrada de arroz e peixes Cultivar, seeding rate and nitrogen side-dress fertilization influence in integrated production of rice and fish

    Directory of Open Access Journals (Sweden)

    Rafael de Campos Carmona

    2008-06-01

    Full Text Available A produção integrada de arroz e peixes é uma prática que pode trazer benefícios aos orizicultores, diminuindo o uso de agroquímicos e o número de operações de preparo do solo, embora possa aumentar o acamamento de plantas. Este trabalho objetivou testar estratégias de manejo que reduzam o acamamento de plantas de arroz cultivado no sistema pré-germinado em área com quatro anos com rizipiscicultura. Um experimento foi conduzido a campo em Santo Antônio da Patrulha, RS, utilizando duas cultivares ("IRGA 417" e "IRGA 419", três densidades de semeadura (70, 150 e 230kg ha-1 e três doses de nitrogênio (N aplicado em cobertura (0, 80 e 160kg ha-1 de N. O acamamento de plantas não diferiu entre as cultivares e entre os níveis de N testados. O rendimento de grãos variou com o incremento da densidade de semeadura apenas na cultivar "IRGA 417". O teor de proteína dos grãos da cultivar "IRGA 417" foi superior ao da "IRGA 419", independentemente de densidade de semeadura e nível de adubação nitrogenada em cobertura.Rice-fish culture is an important practice to flooded rice producers due to lower use of chemicals and number of tillage operations, although it can enhance lodging. The present study aimed to evaluate management strategies to decrease lodging in pre-germinated rice system in area with four years with rice-fish culture. An experiment was carried out in the state of Rio Grande do Sul, Brazil, using two cultivars ('IRGA 417' and 'IRGA 419', three seeding rates (0, 150 and 230kg ha-1 and three nitrogen (N side-dress rates (0, 80 and 160kg ha-1. Lodging did not vary with cultivars neither N rates applied. Grain yield varied with the increase of plant density only for 'IRGA 417'. Grain protein content of 'IRGA 417' is higher than 'IRGA 419' regardless seeding or N rates applied.

  11. Drought susceptibility of modern rice varieties: an effect of linkage of drought tolerance with undesirable traits

    Science.gov (United States)

    Vikram, Prashant; Swamy, B. P. Mallikarjuna; Dixit, Shalabh; Singh, Renu; Singh, Bikram P.; Miro, Berta; Kohli, Ajay; Henry, Amelia; Singh, N. K.; Kumar, Arvind

    2015-01-01

    Green Revolution (GR) rice varieties are high yielding but typically drought sensitive. This is partly due to the tight linkage between the loci governing plant height and drought tolerance. This linkage is illustrated here through characterization of qDTY1.1, a QTL for grain yield under drought that co-segregates with the GR gene sd1 for semi-dwarf plant height. We report that the loss of the qDTY1.1 allele during the GR was due to its tight linkage in repulsion with the sd1 allele. Other drought-yield QTLs (qDTY) also showed tight linkage with traits rejected in GR varieties. Genetic diversity analysis for 11 different qDTY regions grouped GR varieties separately from traditional drought-tolerant varieties, and showed lower frequency of drought tolerance alleles. The increased understanding and breaking of the linkage between drought tolerance and undesirable traits has led to the development of high-yielding drought-tolerant dwarf lines with positive qDTY alleles and provides new hope for extending the benefits of the GR to drought-prone rice-growing regions. PMID:26458744

  12. Drought susceptibility of modern rice varieties: an effect of linkage of drought tolerance with undesirable traits.

    Science.gov (United States)

    Vikram, Prashant; Swamy, B P Mallikarjuna; Dixit, Shalabh; Singh, Renu; Singh, Bikram P; Miro, Berta; Kohli, Ajay; Henry, Amelia; Singh, N K; Kumar, Arvind

    2015-10-13

    Green Revolution (GR) rice varieties are high yielding but typically drought sensitive. This is partly due to the tight linkage between the loci governing plant height and drought tolerance. This linkage is illustrated here through characterization of qDTY1.1, a QTL for grain yield under drought that co-segregates with the GR gene sd1 for semi-dwarf plant height. We report that the loss of the qDTY1.1 allele during the GR was due to its tight linkage in repulsion with the sd1 allele. Other drought-yield QTLs (qDTY) also showed tight linkage with traits rejected in GR varieties. Genetic diversity analysis for 11 different qDTY regions grouped GR varieties separately from traditional drought-tolerant varieties, and showed lower frequency of drought tolerance alleles. The increased understanding and breaking of the linkage between drought tolerance and undesirable traits has led to the development of high-yielding drought-tolerant dwarf lines with positive qDTY alleles and provides new hope for extending the benefits of the GR to drought-prone rice-growing regions.

  13. Root and shoot development, nutrition and uptake efficiency of macronutrients and zinc by upland rice cultivars as affected by phosphorus fertilizationDesenvolvimento radicular e aéreo, nutrição e eficiência de absorção de macronutrientes e zinco por cultivares de arroz de terras altas afetadas pela adubação fosfatada

    Directory of Open Access Journals (Sweden)

    Carlos Alexandre Costa Crusciol

    2013-10-01

    Full Text Available In Brazil, phosphorus availability is one factor that that more limit yield of upland rice under rainfed system. Then, better understanding of cultivars development at phosphorus soil fertilization is very important in the production systems making this more sustainable. The objective was to evaluate the influence of phosphorus doses applied to the soil over the root length, root and shoot dry matter, concentration and content of macronutrient and zinc in shoot and root system as well as the efficiency of nutrient absorption per meter root of upland cultivars of intermediate and modern groups. The experiment was carried out in greenhouse conditions in a completely randomized design in factorial scheme 4 x 4. Treatments were four levels of P fertilization applied at the soil (0, 50, 100 and 200 mg dm-3 of P and four upland rice cultivars (Maravilha – modern group, IAC-201, IAC-202 and Carajás – intermediate group. There is increase in phosphorus availability in the soil with increasing levels of P fertilization. Under low phosphorus availability, cultivars of the intermediate group have better shoots and root system development in relation to the modern cultivar group. Level of phosphorus affected nutrients contents in shoots and root system of upland rice cultivars. The increasing phosphorus fertilization increased absorption of nutrients per meter of root; and although under higher phosphorus availability there was a bigger root growth, in low phosphorus availability root growth was bigger at the expense of shoot growth. No Brasil, a disponibilidade de fósforo é um dos fatores que mais limita a produtividade do arroz de terras altas no sistema de sequeiro. Assim, o conhecimento do desenvolvimento das cultivares melhorados à níveis de fósforo no solo é de grande importância no manejo dos sistemas de produção, tornando-os mais sustentáveis. O objetivo deste trabalho foi avaliar a influência das doses de fósforo aplicados ao solo

  14. The alleviating effect of elevated CO2 on heat stress susceptibility of two wheat (Triticum aestivum L.) cultivars

    DEFF Research Database (Denmark)

    Kjær, Katrine Heinsvig; Ottosen, Carl-Otto; Rosenqvist, Eva S. K.

    2013-01-01

    Wollenweber4 1Department of Bioenergy, Tamilnadu Agricultural University, Coimbatore, India. 2Department of Food Science, Aarhus University, Kirstinebjergvej 10, 5792 Årslev, Denmark 3Institute of Agricultural Sciences and Ecology, University of Copenhagen, Hojbakkegaard Allé 9, 2630 Taastrup, Denmark 4......Institute for Agroecology, Aarhus University, Forsøgsvej 1, 4200 Slagelse, Denmark *Presenting author This study analysed the alleviating effect of elevated CO2 on stress-induced decreases in photosynthesis and changes in carbohydrate metabolism in two wheat cultivars (Triticum aestivum L.) of different...... crop performance under various climatic stresses....

  15. The alleviating effect of elevated CO2 on heat stress susceptibility of two wheat (Triticum aestivum L.) cultivars

    DEFF Research Database (Denmark)

    Shanmugam, S.; Kjær, Katrine Heinsvig; Ottosen, Carl-Otto

    2013-01-01

    This study analysed the alleviating effect of elevated CO2 on stress-induced decreases in photosynthesis and changes in carbohydrate metabolism in two wheat cultivars (Triticum aestivum L.) of different origin. The plants were grown in ambient (400 μl l−1) and elevated (800 μl l−1) CO2 with a day....../night temperature of 15/10 °C. At the growth stages of tillering, booting and anthesis, the plants were subjected to heat stress of 40 °C for three continuous days. Photosynthetic parameters, maximum quantum efficiency of photosystem II (PSII) photochemistry (Fv/Fm) and contents of pigments and carbohydrates...

  16. Variation in the Abundance of OsHAK1 Transcript Underlies the Differential Salinity Tolerance of an indica and a japonica Rice Cultivar

    Directory of Open Access Journals (Sweden)

    Guang Chen

    2018-01-01

    Full Text Available Salinity imposes a major constraint over the productivity of rice. A set of chromosome segment substitution lines (CSSLs, derived from a cross between the japonica type cultivar (cv. Nipponbare (salinity sensitive and the indica type cv. 9311 (moderately tolerant, was scored using a hydroponics system for their salinity tolerance at the seedling stage. Two of the CSSLs, which share a ∼1.2 Mbp stretch of chromosome 4 derived from cv. Nipponbare, were as sensitive to the stress as cv. Nipponbare itself. Fine mapping based on an F2 population bred from a backcross between one of these CSSLs and cv. 9311 narrowed this region to 95 Kbp, within which only one gene (OsHAK1 exhibited a differential (lower transcript abundance in cv. Nipponbare and the two CSSLs compared to in cv. 9311. The gene was up-regulated by exposure to salinity stress both in the root and the shoot, while a knockout mutant proved to be more salinity sensitive than its wild type with respect to its growth at both the vegetative and reproductive stages. Seedlings over-expressing OsHAK1 were more tolerant than wild type, displaying a superior photosynthetic rate, a higher leaf chlorophyll content, an enhanced accumulation of proline and a reduced level of lipid peroxidation. At the transcriptome level, the over-expression of OsHAK1 stimulated a number of stress-responsive genes as well as four genes known to be involved in Na+ homeostasis and the salinity response (OsHKT1;5, OsSOS1, OsLti6a and OsLti6b. When the stress was applied at booting through to maturity, the OsHAK1 over-expressors out-yielded wild type by 25%, and no negative pleiotropic effects were expressed in plants gown under non-saline conditions. The level of expression of OsHAK1 was correlated with Na+/K+ homeostasis, which implies that the gene should be explored a target for molecular approaches to the improvement of salinity tolerance in rice.

  17. Variation in the Abundance of OsHAK1 Transcript Underlies the Differential Salinity Tolerance of an indica and a japonica Rice Cultivar

    Science.gov (United States)

    Chen, Guang; Liu, Chaolei; Gao, Zhenyu; Zhang, Yu; Zhang, Anpeng; Zhu, Li; Hu, Jiang; Ren, Deyong; Yu, Ling; Xu, Guohua; Qian, Qian

    2018-01-01

    Salinity imposes a major constraint over the productivity of rice. A set of chromosome segment substitution lines (CSSLs), derived from a cross between the japonica type cultivar (cv.) Nipponbare (salinity sensitive) and the indica type cv. 9311 (moderately tolerant), was scored using a hydroponics system for their salinity tolerance at the seedling stage. Two of the CSSLs, which share a ∼1.2 Mbp stretch of chromosome 4 derived from cv. Nipponbare, were as sensitive to the stress as cv. Nipponbare itself. Fine mapping based on an F2 population bred from a backcross between one of these CSSLs and cv. 9311 narrowed this region to 95 Kbp, within which only one gene (OsHAK1) exhibited a differential (lower) transcript abundance in cv. Nipponbare and the two CSSLs compared to in cv. 9311. The gene was up-regulated by exposure to salinity stress both in the root and the shoot, while a knockout mutant proved to be more salinity sensitive than its wild type with respect to its growth at both the vegetative and reproductive stages. Seedlings over-expressing OsHAK1 were more tolerant than wild type, displaying a superior photosynthetic rate, a higher leaf chlorophyll content, an enhanced accumulation of proline and a reduced level of lipid peroxidation. At the transcriptome level, the over-expression of OsHAK1 stimulated a number of stress-responsive genes as well as four genes known to be involved in Na+ homeostasis and the salinity response (OsHKT1;5, OsSOS1, OsLti6a and OsLti6b). When the stress was applied at booting through to maturity, the OsHAK1 over-expressors out-yielded wild type by 25%, and no negative pleiotropic effects were expressed in plants gown under non-saline conditions. The level of expression of OsHAK1 was correlated with Na+/K+ homeostasis, which implies that the gene should be explored a target for molecular approaches to the improvement of salinity tolerance in rice. PMID:29354152

  18. Susceptibility of 15 mango (Sapindales: Anacardiaceae) cultivars to the attack by Anastrepha ludens and Anastrepha obliqua (Diptera:Tephritidae) and the role of underdeveloped fruit as pest reservoirs: management implications

    Science.gov (United States)

    We evaluated the susceptibility of 15 mango cultivars to the attack of Anastrepha ludens and A. obliqua, the main Tephritid pests of this crop in Mexico. In a field experiment, bagged, fruit-bearing branches were exposed to gravid females of both fly species. Infestation rates, developmental time,...

  19. Expression of Orseolia oryzae nucleoside diphosphate kinase (OoNDPK) is enhanced in rice gall midge feeding on susceptible rice hosts and its over-expression leads to salt tolerance in Escherichia coli.

    Science.gov (United States)

    Sinha, D K; Atray, I; Bentur, J S; Nair, S

    2012-12-01

    The Asian rice gall midge, Orseolia oryzae, is a major dipteran pest of rice, with many known biotypes. The present investigation was initiated to understand the molecular mechanisms of infestation for developing novel integrated pest management strategies. We isolated and characterized a gene, nucleoside diphosphate kinase (OoNDPK), from the rice gall midge, encoding a protein with 169 amino acid residues and with a secretory signal sequence - an observation that assumes significance as salivary gland secretions have been implicated to play a major role in insect-plant interactions. Furthermore, up-regulation (> 18 folds) of OoNDPK was observed in the salivary glands of maggots feeding on susceptible host in contrast to those feeding on resistant host. Phylogenetic analysis revealed similarity of OoNDPK with its dipteran orthologues. 3DLigandSite analysis, of the predicted OoNDPK and its orthologues, revealed phenylalanine and tyrosine residues to be specifically present in NDPK proteins from the plant feeders. Results suggest secretion of OoNDPK into the host plant and its probable involvement in gall midge-rice interaction. Using the coleoptile cell elongation assay, we demonstrated that the recombinant OoNDPK is capable of causing elongation of rice coleoptile cells. Additionally, heterologous expression of OoNDPK in Escherichia coli increased the tolerance of these cells to salt (NaCl; up to 1 mM), hinting at the involvement of this gene in abiotic stress response as well. © 2012 Royal Entomological Society.

  20. Estimativa das perdas de produtividade de grãos em cultivares de arroz (Oryza sativa pela interferência do capim-arroz (Echinochloa spp. Estimation of grain yield loss in rice (Oryza sativa cultivars due to interference by barnyardgrass (Echinochloa spp.

    Directory of Open Access Journals (Sweden)

    L. Galon

    2007-12-01

    Full Text Available Objetivou-se com este trabalho avaliar o grau de interferência do capim-arroz em cultivares de arroz irrigado e comparar variáveis explicativas, visando identificar aquela que propicia melhor ajuste dos dados a modelo matemático. Para isso, foi conduzido experimento a campo no ano agrícola 2005/06, com cultivo de arroz em sistema convencional. Os tratamentos foram constituídos por seis cultivares de arroz com diferentes durações do ciclo de desenvolvimento e por dez populações de capim-arroz. As variáveis respostas foram avaliadas aos 28 dias após a emergência do arroz. O modelo da hipérbole retangular foi utilizado para descrever a relação entre perda de produtividade de grãos de arroz e variáveis explicativas população de plantas, massa da matéria seca da pare aérea, cobertura do solo e área foliar. As perdas de produtividade de grãos de arroz devidas à interferência do capim-arroz podem ser estimadas satisfatoriamente pelo modelo da hipérbole retangular. Os cultivares de arroz IRGA 421, 416 ou 417 foram os mais competitivos, obtendo-se adequado ajuste dos dados ao modelo testado para todas as variáveis avaliadas. A variável população de plantas de capim-arroz apresenta melhor ajuste ao modelo do que massa da matéria seca da parte aérea, cobertura do solo ou área foliar.The objectives of this research were to evaluate the level of barnyardgrass interference in flooded rice cultivars and to compare explicative variables aiming to identify the variable providing better data adjustment to a mathematical model. Thus, a field experiment was carried out during the 2005/2006 growing season, with rice cultivated under the conventional system. Treatments consisted of six rice cultivars differing in life cycle duration and ten barnyardgrass plant populations. Variables were evaluated 28 days after rice emergence. The rectangular hyperbolic model was tested to describe the relationship between rice grain yield loss and

  1. Dynamic metabolic responses of brown planthoppers towards susceptible and resistant rice plants

    OpenAIRE

    Liu, Caixiang; Du, Ba; Hao, Fuhua; Lei, Hehua; Wan, Qianfen; He, Guangcun; Wang, Yulan; Tang, Huiru

    2017-01-01

    Summary Brown planthopper (Nilaparvata lugens Stål, BPH) causes huge economic losses in rice‐growing regions, and new strategies for combating BPH are required. To understand how BPHs respond towards BPH‐resistant plants, we systematically analysed the metabolic differences between BPHs feeding on the resistant and susceptible plants using NMR and GC‐FID/MS. We also measured the expression of some related genes involving glycolysis and biosyntheses of trehalose, amino acids, chitin and fatty ...

  2. Metabolic variation in rice cultivars of contrasting salt tolerance and its improvement by zinc in sodic soil.

    Science.gov (United States)

    Singh, H P; Singh, T N

    2006-07-01

    The severity of Zn deficiency increased with increase in soil exchangeable sodium percentage (ESP) with salt sensitive variety M1-48 scoring 6 at ESP 62 as against only score 3 by salt tolerant variety Pokkali under similar soil conditions. Strikingly, zinc contents were much higher in salt tolerant variety than in salt sensitive one. Zinc application increased zinc concentration in the roots by a factor of 2.85 to 3.87 in Pokkali whereas it rose from 2.37 to 4.35 times in M1-48 depending upon ESP but in the leaves it registered increase of 1.5 to 1.8 times only. In general, the concentrations of reducing sugar were less (about 2.2%) than that of non-reducing (about 3.8%) in both the varieties under normal soil conditions. However, the concentration of reducing sugar doubled (4.2-4.4%) at the highest ESP 62, whereas the concentration of non-reducing sugar though increased (4.1 to 5.1%) but not as vigorously as reducing one. Zinc application reduced the concentration of reducing sugar but not that of non-reducing at similar ESP values. In Pokkali, the concentrations of total sugar increased from 6% at ESP 20 to 9.34% at ESP 62, whereas it registered enhancements of 5.98 to 8.6% in M1-48 under similar conditions. The nitrate reductase (NR) activity decreased with increase in soil sodicity however, the varietal differences in NR activity were wider under Zn-stress than under conditions of applied zinc with Pokkali registering higher NR activities. Carbonic anhydrase activities were higher in salt tolerant variety. Inhibition in carbonic anhydrase activity amounted to 23 and 45% in salt-sensitive variely M1-48 whereas only 19 and 33% in salt-tolerant variety Pokkali at ESP 41 and 62, respectively. The effects of zinc application at higher soil sodicity were more obvious in salt-sensitive variety than in salt-tolerant one. The findings suggest that the tolerance to Zn stress runs parallel to salt tolerance abilities of rice varieties.

  3. Identification of genes differentially expressed during interaction of resistant and susceptible apple cultivars (Malus x domestica) with Erwinia amylovora.

    Science.gov (United States)

    Baldo, Angela; Norelli, Jay L; Farrell, Robert E; Bassett, Carole L; Aldwinckle, Herb S; Malnoy, Malnoy

    2010-01-04

    The necrogenic enterobacterium, Erwinia amylovora is the causal agent of the fire blight (FB) disease in many Rosaceae species, including apple and pear. During the infection process, the bacteria induce an oxidative stress response with kinetics similar to those induced in an incompatible bacteria-plant interaction. No resistance mechanism to E. amylovora in host plants has yet been characterized, recent work has identified some molecular events which occur in resistant and/or susceptible host interaction with E. amylovora: In order to understand the mechanisms that characterize responses to FB, differentially expressed genes were identified by cDNA-AFLP analysis in resistant and susceptible apple genotypes after inoculation with E. amylovora. cDNA were isolated from M.26 (susceptible) and G.41 (resistant) apple tissues collected 2 h and 48 h after challenge with a virulent E. amylovora strain or mock (buffer) inoculated. To identify differentially expressed transcripts, electrophoretic banding patterns were obtained from cDNAs. In the AFLP experiments, M.26 and G.41 showed different patterns of expression, including genes specifically induced, not induced, or repressed by E. amylovora. In total, 190 ESTs differentially expressed between M.26 and G.41 were identified using 42 pairs of AFLP primers. cDNA-AFLP analysis of global EST expression in a resistant and a susceptible apple genotype identified different major classes of genes. EST sequencing data showed that genes linked to resistance, encoding proteins involved in recognition, signaling, defense and apoptosis, were modulated by E. amylovora in its host plant. The expression time course of some of these ESTs selected via a bioinformatic analysis has been characterized. These data are being used to develop hypotheses of resistance or susceptibility mechanisms in Malus to E. amylovora and provide an initial categorization of genes possibly involved in recognition events, early signaling responses the

  4. Identification of genes differentially expressed during interaction of resistant and susceptible apple cultivars (Malus × domestica) with Erwinia amylovora

    Science.gov (United States)

    2010-01-01

    Background The necrogenic enterobacterium, Erwinia amylovora is the causal agent of the fire blight (FB) disease in many Rosaceaespecies, including apple and pear. During the infection process, the bacteria induce an oxidative stress response with kinetics similar to those induced in an incompatible bacteria-plant interaction. No resistance mechanism to E. amylovora in host plants has yet been characterized, recent work has identified some molecular events which occur in resistant and/or susceptible host interaction with E. amylovora: In order to understand the mechanisms that characterize responses to FB, differentially expressed genes were identified by cDNA-AFLP analysis in resistant and susceptible apple genotypes after inoculation with E. amylovora. Results cDNA were isolated from M.26 (susceptible) and G.41 (resistant) apple tissues collected 2 h and 48 h after challenge with a virulent E. amylovora strain or mock (buffer) inoculated. To identify differentially expressed transcripts, electrophoretic banding patterns were obtained from cDNAs. In the AFLP experiments, M.26 and G.41 showed different patterns of expression, including genes specifically induced, not induced, or repressed by E. amylovora. In total, 190 ESTs differentially expressed between M.26 and G.41 were identified using 42 pairs of AFLP primers. cDNA-AFLP analysis of global EST expression in a resistant and a susceptible apple genotype identified different major classes of genes. EST sequencing data showed that genes linked to resistance, encoding proteins involved in recognition, signaling, defense and apoptosis, were modulated by E. amylovora in its host plant. The expression time course of some of these ESTs selected via a bioinformatic analysis has been characterized. Conclusion These data are being used to develop hypotheses of resistance or susceptibility mechanisms in Malus to E. amylovora and provide an initial categorization of genes possibly involved in recognition events, early

  5. Physico-chemical parameters of rice cultivars fertilized with nitrogen Características físico-químicas do grão de cultivares de arroz em função da adubação nitrogenada

    Directory of Open Access Journals (Sweden)

    Fábio Luiz Checchio Mingotte

    2012-12-01

    Full Text Available Rice (Oryza sativa L. stands out as a staple food of the world population due to important nutritional properties. However, rice physico-chemical parameters vary according to genotype and management, for example, the use of nitrogen fertilizer. The aim of this work was to evaluate physico-chemical parameters of grains from thirteen cultivars of upland rice under supplemental sprinkler irrigation and fertilized with different nitrogen rates by topdressing (0, 40, 80, 120 and 160 kg ha-1. Parameters such as milling efficiency, commercial grade, gelatinization temperature, as well as total nitrogen and crude protein contents of grains were evaluated. Nitrogen fertilization positively influences the whole grain yield, especially IAC 25 and BRS Colosso. BRS Aroma, IAC 202, IAC 500, BEST 2000, Curinga and Baldo have a high percentage of broken grains. The cultivars Baldo and Carnaroli (appropriate for Italian cuisine, IAC 25 and Caiapó are classified as long grain and the others, as long-thin. The cultivars, except CIRAD 141, displayed grain gelatinization temperature between intermediate and low, providing quick cooking. The grain content protein varies among cultivars, and it can be increased with nitrogen fertilization. O arroz (Oriza sativa L. destaca-se como alimento básico da população mundial devido suas importantes propriedades nutricionais. No entanto, as características físico-químicas do grão de arroz variam com a cultivar, podendo ainda ser influenciadas pelo manejo cultural, a exemplo da adubação nitrogenada. O presente trabalho teve por objetivo avaliar características físico-químicas dos grãos de treze cultivares de arroz de terras altas, sob irrigação suplementar por aspersão, submetidas a diferentes doses de nitrogênio (0, 40, 80, 120 e 160 kg ha-1 em cobertura. Foram avaliados os componentes de rendimento de engenho, assim como a classe comercial, temperatura de gelatinização, teor de nitrogênio total e

  6. Putting Plant Genetic Diversity and Variability at Work for Breeding: Hybrid Rice Suitability in West Africa

    Directory of Open Access Journals (Sweden)

    Raafat El-Namaky

    2017-07-01

    Full Text Available Rice is a staple food in West Africa, where its demand keeps increasing due to population growth. Hence, there is an urgent need to identify high yielding rice cultivars that fulfill this demand locally. Rice hybrids are already known to significantly increase productivity. This study evaluated the potential of Asian hybrids with good adaptability to irrigated and rainfed lowland rice areas in Mali, Nigeria, and Senegal. There were 169 hybrids from China included in trials at target sites during 2009 and 2010. The genotype × environment interaction was highly significant (p < 0.0001 for grain yield indicating that the hybrids’ and their respective cultivar checks’ performance differed across locations. Two hybrids had the highest grain yield during 2010 in Mali, while in Nigeria, four hybrids in 2009 and one hybrid in 2010 had higher grain yield and matured earlier than the best local cultivar. The milling recovery, grain shape and cooking features of most hybrids had the quality preferred by West African consumers. Most of the hybrids were, however, susceptible to African rice gall midge (AfRGM and Rice Yellow Mottle Virus (RMYV isolate Ng40. About 60% of these hybrids were resistant to blast. Hybrids need to incorporate host plant resistant for AfRGM and RYMV to be grown in West Africa.

  7. Susceptibility to Rust (Puccinia Sp. in Cultivars of Italian and Perennial Ryegrass Grown in Two Locations of Italy

    Directory of Open Access Journals (Sweden)

    Luigi Russi

    2009-03-01

    Full Text Available A large set of foreign varieties of Italian ryegrass (Lolium multiflorum and perennial ryegrass (L. perenne were evaluated for their response to natural rust infection in two Italian locations (Lodi in the north; Perugia in the centre of the country at three-year intervals in 2001, 2004 and 2007, to acquire information on novel germplasm for Italy and verify any spatial and temporal variation in the varietal response to the disease. Crown rust (caused by Puccinia coronata on Italian ryegrass and stem rust (caused by P. graminis on perennial rygrass were consistently recorded in appreciable amount (average susceptibility score > 2.0 on a 1-9 scale. Vice-versa, crown rust on perennial and stem rust on Italian ryegrass seldom affected appreciably the crop. Strong interactions of variety response (to the prevailing pathogen with locations and years of evaluation were observed in both ryegrasses. Subsequently, the repeatability of results between locations, or between years within locations, as measured by rank correlations of variety scores, was sometimes only moderate or low. However, despite such interactions, a few promising varieties were identified in each species with consistently low susceptibility across evaluation environments, which deserve further investigation for a possible direct utilisation, or as donors of useful genes for breeding purposes.

  8. Suscetibilidade de oito cultivares de bananeira à sigatoka-amarela na região de Marília (SP Susceptibility to sigatoka of eight banana cultivars in the region of Marília, State of São Paulo, Brazil

    Directory of Open Access Journals (Sweden)

    Luiz Antonio Junqueira Teixeira

    1996-01-01

    Full Text Available A suscetibilidade de oito cultivares de bananeira à sigatoka-amarela (Mycosphaerella musicola foi avaliada em um experimento de campo, na região de Marília (SP. Três cultivares pertenciam ao Grupo AAA ('Nanicão', 'Nanicão Jangada' e 'Grande Naine' e cinco, ao AAB ('Prata', 'Enxerto', 'Maçã', 'Mysore' e 'Prata Zulu'. O experimento foi implantado em fevereiro de 1992 e, durante os três primeiros anos, não foi feito controle de sigatoka. A suscetibilidade dos materiais foi estimada mediante avaliações em três épocas: março de 93, abril e julho de 94. Na primeira avaliação, foi contado o número de manchas na segunda folha e, nas outras, foram atribuídas notas de acordo com a intensidade dos sintomas. Os cultivares foram agrupados em três classes: altamente suscetível (AS, suscetível (S ou parcialmente resistente (PR. Nenhum dos cultivares pôde ser considerado imune, pois todos apresentaram lesões foliares. Os cultivares mais suscetíveis foram os do Grupo AAA, Subgrupo Cavendish ('Nanicão', 'Grande Naine' e 'Nanicão Jangada' e 'Enxerto' (AAB. 'Mysore' (AAB e 'Prata Zulu' (AAB foram classificados como parcialmente resistentes. 'Prata' (AAB e 'Maçã' (AAB mostraram-se medianamente suscetíveis.Susceptibility of eight banana cultivars to sigatoka caused by Mycosphaerella musicola was assessed in a field experiment in the region of Marília, State of São Paulo. Three cultivars were members of AAA Group ('Nanicão', 'Nanicão Jangada' and 'Grande Naine' and five belonged to AAB Group ('Prata', 'Enxerto', 'Maçã', 'Mysore' and 'Prata Zulu'. The experiment was established in February, 1992, and during the first three years, sigatoka disease was not controlled. Susceptibility was assessed in three occasions: March, 1993, April and July, 1994. In the first, it was counted the number of spots on the second leaf, and in the others, the plants were graded according to the amount of leaf scorch due to sigatoka. The cultivars were

  9. Expression of the maize ZmGF14-6 gene in rice confers tolerance to drought stress while enhancing susceptibility to pathogen infection

    Science.gov (United States)

    Campo, Sonia; Peris-Peris, Cristina; Montesinos, Laura; Peñas, Gisela; Messeguer, Joaquima; San Segundo, Blanca

    2012-01-01

    14-3-3 proteins are found in all eukaryotes where they act as regulators of diverse signalling pathways associated with a wide range of biological processes. In this study the functional characterization of the ZmGF14-6 gene encoding a maize 14-3-3 protein is reported. Gene expression analyses indicated that ZmGF14-6 is up-regulated by fungal infection and salt treatment in maize plants, whereas its expression is down-regulated by drought stress. It is reported that rice plants constitutively expressing ZmGF14-6 displayed enhanced tolerance to drought stress which was accompanied by a stronger induction of drought-associated rice genes. However, rice plants expressing ZmGF14-6 either in a constitutive or under a pathogen-inducible regime showed a higher susceptibility to infection by the fungal pathogens Fusarium verticillioides and Magnaporthe oryzae. Under infection conditions, a lower intensity in the expression of defence-related genes occurred in ZmGF14-6 rice plants. These findings support that ZmGF14-6 positively regulates drought tolerance in transgenic rice while negatively modulating the plant defence response to pathogen infection. Transient expression assays of fluorescently labelled ZmGF14-6 protein in onion epidermal cells revealed a widespread distribution of ZmGF14-6 in the cytoplasm and nucleus. Additionally, colocalization experiments of fluorescently labelled ZmGF14-6 with organelle markers, in combination with cell labelling with the endocytic tracer FM4-64, revealed a subcellular localization of ZmGF14-6 in the early endosomes. Taken together, these results improve our understanding of the role of ZmGF14-6 in stress signalling pathways, while indicating that ZmGF14-6 inversely regulates the plant response to biotic and abiotic stresses. PMID:22016430

  10. Physiology and productivity of rice crop influenced by drought stress ...

    African Journals Online (AJOL)

    Rice is sensitive to moisture stress and in view of the water scarcity in the coming years, it is imperative to evaluate the performance of rice cultivar under moisture deficit. The present study aimed to evaluate the physiological responses of two rice cultivars under drought stress induced at panicle initiation and soft dough ...

  11. Storage behaviour of two contrasting upland rice genotypes | Bam ...

    African Journals Online (AJOL)

    This study investigated complaints by upland rice farmers in Ghana that their local rice cultivar "Kawomo" (Oryza glaberrima) stored better than an improved upland rice cultivar, IDSA 85 (Oryza sativa subsp. japonica), tested and selected in a Participatory Varietal Selection programme. One seed lot of "Kawomo" and two ...

  12. Studies on the Accumulation of Drought-Induced Boiling Soluble Proteins (Hydrophilins at Vegetative and Reproductive Phases of Drought Tolerant and Susceptible Cultivars of Triticum aestivum

    Directory of Open Access Journals (Sweden)

    Gurmeen RAKHRA

    2014-06-01

    Full Text Available Drought is one of the major environmental constraints affecting the crops worldwide. Expression of boiling soluble proteins (BSPs is of paramount importance, because they play important roles in the water stress responses and also in plant metabolism. In this study, the effect of drought on BSPs at vegetative (shoots and reproductive (seeds phases of drought tolerant (cv. ‘PBW 527’ and drought susceptible (cv. ‘PBW 343’ cultivars of Triticumaestivum were carried at three different developmental stages. The boiling soluble protein profiles of shoots and seeds were outlined via SDS-PAGE followed by immune-blot analysis using anti-HSP, anti-APase, anti-LEA, anti-SOD, anti-AQUA and anti-CAT antibodies. Western blot analysis revealed that expression of BSPs was modulated differentially in a stress, tissue, developmental stage and cultivar dependent manner. For instance, enhanced expression of seeds BSPs (APase, LEA, CAT, AQUA was observed in the tolerant cv. ‘PBW 527’ after drought stress. However, no such enhancement was observed in the susceptible cultivar. Similarly, in shoots of cv. ‘PBW 527’, a substantial increase of BSP (SOD expression was established after drought stress treatment, indicating their role in drought stress adaptation. Further, to gain an insight into the role of BSPs, a time course pre- and post-stress kinetic studies were also conducted in the seeds of tolerant and susceptible wheat cultivars. Based upon the observations, the possible role of boiling soluble proteins (hydrophilins in water stress tolerance is discussed.

  13. Effects of manganese oxide-modified biochar composites on arsenic speciation and accumulation in an indica rice (Oryza sativa L.) cultivar.

    Science.gov (United States)

    Yu, Zhihong; Qiu, Weiwen; Wang, Fei; Lei, Ming; Wang, Di; Song, Zhengguo

    2017-02-01

    A pot experiment was used to investigate arsenic (As) speciation and accumulation in rice, as well as its concentration in both heavily contaminated and moderately contaminated soils amended with manganese oxide-modified biochar composites (MBC) and biochar alone (BC). In heavily As-contaminated soil, application of BC and MBC improved the weight of above-ground part and rice root, whereas in moderately As-contaminated soil, the application of MBC and low rate BC amendment increased rice root, grain weight and the biomass of the plant. Arsenic reduction in different parts of rice grown in MBC-amended soils was greater than that in plants cultivated in BC-amended soils. Such reduction can be attributed to the oxidation of arsenite, As(III), to arsenate, As(V), by Mn-oxides, which also had a strong adsorptive capacity for As(V). MBC amended to As-contaminated soil had a positive effect on amino acids. The Fe and Mn levels in the iron-manganese plaque that formed on the rice root surface differed among the treatments. MBC addition significantly increased Mn content (p oxide-modified biochar to As-contaminated paddy soil could effectively remediate contaminated soil and reduce As accumulation in edible parts of rice. Copyright © 2016 Elsevier Ltd. All rights reserved.

  14. Impact of volunteer rice infestation on yield and grain quality of rice.

    Science.gov (United States)

    Singh, Vijay; Burgos, Nilda R; Singh, Shilpa; Gealy, David R; Gbur, Edward E; Caicedo, Ana L

    2017-03-01

    Volunteer rice (Oryza sativa L.) grains may differ in physicochemical traits from cultivated rice, which may reduce the quality of harvested rice grain. To evaluate the effect of volunteer rice on cultivated rice, fields were surveyed in Arkansas in 2012. Cropping history that included hybrid cultivars in the previous two years (2010 and 2011) had higher volunteer rice infestation (20%) compared with fields planted previously with inbred rice (5.5%). The total grain yield of rice was reduced by 0.4% for every 1% increase in volunteer rice density. The grain quality did not change in fields planted with the same cultivar for three years. Volunteer rice density of at least 7.6% negatively impacted the head rice and when infestation reached 17.7%, it also reduced the rice grain yield. The protein and amylose contents of rice were not affected until volunteer rice infestation exceeded 30%. Crop rotation systems that include hybrid rice are expected to have higher volunteer rice infestation than systems without hybrid rice. It is predicted that, at 8% infestation, volunteer rice will start to impact head rice yield and will reduce total yield at 18% infestation. It could alter the chemical quality of rice grain at >30% infestation. © 2016 Society of Chemical Industry. © 2016 Society of Chemical Industry.

  15. Effects of Surface Charge and Functional Groups on the Adsorption and Binding Forms of Cu and Cd on Roots of indica and japonica Rice Cultivars

    Directory of Open Access Journals (Sweden)

    Zhao-Dong Liu

    2017-08-01

    Full Text Available This work was designed to understand the mechanisms of adsorption of copper (Cu and cadmium (Cd on roots of indica and japonica varieties of rice. Six varieties each of indica and japonica rice were grown in hydroponics and the chemical properties of the root surface were analyzed, including surface charges and functional groups (-COO- groups as measured by the streaming potential and attenuated total reflectance-Fourier transform infrared spectroscopy (ATR-FTIR. Binding forms of heavy metals adsorbed on rice roots were identified using sequential extraction methods. In rice roots exposed to Cu and Cd solutions, Cu existed mainly in both exchangeable and complexed forms, whereas Cd existed mainly in the exchangeable form. The amounts of exchangeable Cu and Cd and total adsorbed metal cations on the roots of indica varieties were significantly greater than those on the roots of japonica varieties, and the higher negative charges and the larger number of functional groups on the roots of indica varieties were responsible for their higher adsorption capacity and greater binding strength for Cu and Cd. Surface charge and functional groups on roots play an important role in the adsorption of Cu and Cd on the rice roots.

  16. Effects of Surface Charge and Functional Groups on the Adsorption and Binding Forms of Cu and Cd on Roots of indica and japonica Rice Cultivars.

    Science.gov (United States)

    Liu, Zhao-Dong; Zhou, Qin; Hong, Zhi-Neng; Xu, Ren-Kou

    2017-01-01

    This work was designed to understand the mechanisms of adsorption of copper (Cu) and cadmium (Cd) on roots of indica and japonica varieties of rice. Six varieties each of indica and japonica rice were grown in hydroponics and the chemical properties of the root surface were analyzed, including surface charges and functional groups (-COO- groups) as measured by the streaming potential and attenuated total reflectance-Fourier transform infrared spectroscopy (ATR-FTIR). Binding forms of heavy metals adsorbed on rice roots were identified using sequential extraction methods. In rice roots exposed to Cu and Cd solutions, Cu existed mainly in both exchangeable and complexed forms, whereas Cd existed mainly in the exchangeable form. The amounts of exchangeable Cu and Cd and total adsorbed metal cations on the roots of indica varieties were significantly greater than those on the roots of japonica varieties, and the higher negative charges and the larger number of functional groups on the roots of indica varieties were responsible for their higher adsorption capacity and greater binding strength for Cu and Cd. Surface charge and functional groups on roots play an important role in the adsorption of Cu and Cd on the rice roots.

  17. Molecular progress on the mapping and cloning of functional genes for blast disease in rice (Oryza sativa L.): current status and future considerations.

    Science.gov (United States)

    Ashkani, S; Rafii, M Y; Shabanimofrad, M; Ghasemzadeh, A; Ravanfar, S A; Latif, M A

    2016-01-01

    Rice blast disease, which is caused by the fungal pathogen Magnaporthe oryzae, is a recurring problem in all rice-growing regions of the world. The use of resistance (R) genes in rice improvement breeding programmes has been considered to be one of the best options for crop protection and blast management. Alternatively, quantitative resistance conferred by quantitative trait loci (QTLs) is also a valuable resource for the improvement of rice disease resistance. In the past, intensive efforts have been made to identify major R-genes as well as QTLs for blast disease using molecular techniques. A review of bibliographic references shows over 100 blast resistance genes and a larger number of QTLs (∼500) that were mapped to the rice genome. Of the blast resistance genes, identified in different genotypes of rice, ∼22 have been cloned and characterized at the molecular level. In this review, we have summarized the reported rice blast resistance genes and QTLs for utilization in future molecular breeding programmes to introgress high-degree resistance or to pyramid R-genes in commercial cultivars that are susceptible to M. oryzae. The goal of this review is to provide an overview of the significant studies in order to update our understanding of the molecular progress on rice and M. oryzae. This information will assist rice breeders to improve the resistance to rice blast using marker-assisted selection which continues to be a priority for rice-breeding programmes.

  18. Períodos de interferência das plantas daninhas na cultura do arroz de terras altas. II - cultivar Caiapó Interference periods of weeds in the upland rice - Caiapó variety

    Directory of Open Access Journals (Sweden)

    Maria Rosangela Malheiros Silva

    2009-01-01

    Full Text Available Os experimentos foram desenvolvidos nos anos agrícolas 2003/2004 e 2004/2005, em área experimental da Universidade Estadual Paulista, Campus de Jaboticabal (SP, com o objetivo de se determinarem os períodos de interferência das plantas daninhas na cultura do arroz de terras altas, cultivar Caiapó. O delineamento experimental foi em blocos ao acaso com quatro repetições e 16 tratamentos. Os tratamentos foram constituídos por períodos crescentes de controle ou de convivência das plantas daninhas após a emergência da cultura: 0-10, 0-20, 0-30, 0-40, 0-50, 0-60, 0-70 dias e 0-colheita. Nos dois anos, as famílias predominantes eram Poaceae, Asteraceae, Amaranthaceae e Malvaceae e as principais plantas daninhas presentes foram: Cyperus rotundus L., Cenchrus echinatus L., Digitaria spp Heist., Echinochloa crus-galli (L. P. Beauv., Brachiaria decumbens Stapf., Eleusine indica Gaertn e Alternanthera tenella Colla. A cultivar de arroz de terras altas Caiapó deve ser mantida sem plantas daninhas nos 30 dias após a emergência.The experiments were carried out in two growing seasons (2003/04 and 2004/05 in an experimental area at São Paulo State University - UNESP, Jaboticabal Campus, to evaluate the weed interference periods on the upland Caiapó rice variety. The experimental design was randomized blocks with 4 replicates and 16 treatments. The treatments consisted of increasing periods of control or coexistence after emergence of the culture: 0-10; 0-20; 0-30; 0-40; 0-50; 0-60; 0-70 days; 0-harvest. The predominant families were Poaceae, Asteraceae, Amaranthaceae and Malvaceae, and the main weeds present were Cyperus rotundus L., Cenchrus echinatus L., Digitaria spp Heist., Echinochloa crus-galli (L. P. Beauv., Brachiaria decumbens Stapf., Eleusine indica Gaertn e Alternanthera tenella Colla for both years. The upland rice cultivar Caiapó is to be kept free of weeds for 30 days after emergence.

  19. Changes in free polyamine levels, expression of polyamine biosynthesis genes, and performance of rice cultivars under salt stress: a comparison with responses to drought

    Science.gov (United States)

    Do, Phuc T.; Drechsel, Oliver; Heyer, Arnd G.; Hincha, Dirk K.; Zuther, Ellen

    2014-01-01

    Soil salinity affects a large proportion of rural area and limits agricultural productivity. To investigate differential adaptation to soil salinity, we studied salt tolerance of 18 varieties of Oryza sativa using a hydroponic culture system. Based on visual inspection and photosynthetic parameters, cultivars were classified according to their tolerance level. Additionally, biomass parameters were correlated with salt tolerance. Polyamines have frequently been demonstrated to be involved in plant stress responses and therefore soluble leaf polyamines were measured. Under salinity, putrescine (Put) content was unchanged or increased in tolerant, while dropped in sensitive cultivars. Spermidine (Spd) content was unchanged at lower NaCl concentrations in all, while reduced at 100 mM NaCl in sensitive cultivars. Spermine (Spm) content was increased in all cultivars. A comparison with data from 21 cultivars under long-term, moderate drought stress revealed an increase of Spm under both stress conditions. While Spm became the most prominent polyamine under drought, levels of all three polyamines were relatively similar under salt stress. Put levels were reduced under both, drought and salt stress, while changes in Spd were different under drought (decrease) or salt (unchanged) conditions. Regulation of polyamine metabolism at the transcript level during exposure to salinity was studied for genes encoding enzymes involved in the biosynthesis of polyamines and compared to expression under drought stress. Based on expression profiles, investigated genes were divided into generally stress-induced genes (ADC2, SPD/SPM2, SPD/SPM3), one generally stress-repressed gene (ADC1), constitutively expressed genes (CPA1, CPA2, CPA4, SAMDC1, SPD/SPM1), specifically drought-induced genes (SAMDC2, AIH), one specifically drought-repressed gene (CPA3) and one specifically salt-stress repressed gene (SAMDC4), revealing both overlapping and specific stress responses under these conditions

  20. Effects of Organic and Conventional Cropping Systems on Technological Properties and Phenolic Compounds of Freshly Harvested and Stored Rice.

    Science.gov (United States)

    Alves, Gabriela Hörnke; Paraginski, Ricardo Tadeu; Lamas, Nelisa de Souza; Hoffmann, Jessica Fernanda; Vanier, Nathan Levien; de Oliveira, Maurício

    2017-10-01

    This study compared the physicochemical and technological properties of the IRGA 410 rice cultivar, obtained from organic and conventional cropping systems, and showed its susceptibility to changes during storage at 0, 6, and 12 mo. The rice conventional cropping system exhibited greater protein, lipids, and ash levels, and a head rice yield. However, organic rice presented greater total carbohydrates, soluble protein, amylose content, 33% greater free phenolics, and phenolic acids, but exhibited a greater percentage of stained grains during the storage period. The free phenolic content of cooked rice was lower than the free phenolic content of the raw rice. By Liquid chromatography with mass spectrometer (LC-MS) were identified p-coumaric and ferulic acids in both fractions (free and bound). The content of p-coumaric acid and ferulic acid in bound fraction was higher in organic brown rice than in conventional brown rice. At 6 and 12 mo of storage, the main fungi found were Aspergillus sp. and Penicillium sp. Prior to storage, the Bipolaris sp. fungi was identified only in organic rice. For conventional rice, the infestation level by Aspergillus sp. increased from 3% to 70% at the 6th mo of storage. In addition to the advantage of organic rice being free of agrochemicals, this study revealed that natural plant defense compounds could be produced when the rice was subjected to more biotic and abiotic stresses. However, some disadvantages were observed, such as lower protein content and a greater percentage of soluble protein, which favored the breaking of rice in processing, and a greater percentage of grain stained before and during storage. The organic and conventional cropping systems affect the physicochemical and technological properties of rice grains, which is one of the main cereals grown and consumed in the world. This study shows the advantages and disadvantages of the cropping system in grain properties that are in the interest of both consumers and

  1. Tolerância de cultivares de arroz a dois níveis de alumínio em soluções nutritivas contendo diferentes concentrações de sais Influence of different salt concentrations in nutrient solution on tolerance to aluminum toxicity in rice cultivars

    Directory of Open Access Journals (Sweden)

    Carlos Eduardo de Oliveira Camargo

    1984-01-01

    Full Text Available Foi estudado o comportamento diferencial de seis cultivares de arroz em soluções nutritivas contendo dois níveis de alumínio (20 e 40mg/litro combinados com quatro diferentes concentrações salinas. A tolerância ao excesso de Al foi medida pelo comprimento médio das raízes e pelo peso da matéria seca da parte aérea dos cultivares avaliados após dez dias de crescimento em solução nutritiva contendo uma concentração calculada de sais e de alumínio. Os cultivares IAC-120, IAC-435, IAC-164 e IAC-165 foram tolerantes a 20mg/litro de Al3+, independente da concentração salina das soluções, e IAC-899 e IR-841 foram sensíveis a essa concentração de alumínio quando a concentração salina foi diluída para um quinto e um décimo da solução nutritiva completa. Os cultivares IAC-120, IAC-435, IAC-164 e IAC-165 foram mais tolerantes a 40mg/litro de Al3+ quando se empregaram soluções salinas mais concentradas, mostrando, porém, menor tolerância a essa concentração de Al3+ nas soluções salinas com um décimo da concentração da nutritiva completa. Os cultivares IAC-899 e IR-841 foram sensíveis a 40mg/litro de Al3+, mesmo com soluções salinas mais concentradas, e aumentaram essa sensibilidade à medida que as concentrações salinas das soluções se tornaram mais diluídas. Os sintomas de toxicidade de alumínio em arroz poderiam ser obtidos ou por aumentar a concentração de alumínio ou por diminuir as concentrações de sais da solução nutritiva para todos os cultivares estudados, mantendo-se constante a temperatura de 30±1°C e o pH 4,0.The response of six rice cultivars to aluminum toxicity was studied, in nutrient solutions using two different levels of this element (20 and 40 ppm, combined with four different salt concentrations. The tolerance was measured taking into account the root length and leaf dry weight after a growth period of ten days in nutrient solutions with Al3+ (20 and 40 ppm combined with equal

  2. Períodos de drenagem do solo no perfilhamento, progresso da brusone e rendimento degrãos de cultivares de arroz irrigado no sistema pré-germinado Soil drainage periods during tillering brast progress and grain yield of paddy rice cultivars grown with pre-germinated seeds

    Directory of Open Access Journals (Sweden)

    Amauri Bogo

    2010-09-01

    yield of rice. This work was carried out aiming to study the effect of soil drainage periods during tillering on the progress of leaf and panicle blast (Pyricularia grisea and grain yield of paddy rice grown with pre-germinated seeds. Four periods of water drainage were tested: no drainage, soil drainage at tillering and reflooding at 7, 14 and 21 days after soil drainage. Two cultivars were eva lu a t ed for ea ch ir r igat ion syst em: Epagr i 10 6 (short season and Epagri 109 ( late season . The cultivar 's disease reaction was evaluated during the growing seasons of 2004/05 and 2005/06, in Pouso Redondo, SC, Brazil. Blast severity on leaves and panicles was determined in seven samples, performed from 40 to 90 and 100 to 140 days after rice sowing, respectively. Data were used to estimat e the area under disease progress curve (AUDPC of each cultivar. The water management system at tillering did not affect the area under disease progress curve (AUDPC and grain yield. Smaller AUDPC values were presented by Epagri 106 for leaf and panicle bast. Grain yield ranged from 7.833 to 9.239 kg ha-1 (2004/2005 and from 3.984 to 9.040 kg ha-1 (2005/2006. High pluvial precipitation during the drainage periods prevented drought. This probably mitigated the effects of water management system on blast progress and rice grain yield.

  3. Does African catfish ( Clarias gariepinus ) affect rice in integrated ...

    African Journals Online (AJOL)

    An experiment was conducted for 98 days in the Lake Victoria Basin to investigate the interactions of fish and rice growth performance in rice paddies. The experiment was laid out in a split-plot design, with rice cultivar as the main plot and method of rice-fish culture as the sub-plot. Treatments consisted of two levels of ...

  4. genetic analysis of resistance to rice bacterial blight in uganda

    African Journals Online (AJOL)

    Prof. Adipala Ekwamu

    Advances in rice genetics. Supplement to rice genetics IV. Proceedings of the Fourth. International Rice Genetics Symposium, 22-. 27 October 2000. IRRI. Los Baños, Philippines. Lee, K.S., Rasabandith, S., Angeles, E.R. and. Khush, G.S. 2003. Inheritance of resistance to bacterial blight in 21cultivars of rice. Phytopathology ...

  5. Adição de molibdênio ao inoculante turfoso com bactérias diazotróficas usado em duas cultivares de arroz irrigado Addition of molybdenum in peat innoculum with diazotrophic bacteria used in two rice cultivars

    Directory of Open Access Journals (Sweden)

    Salomão Lima Guimarães

    2007-03-01

    Full Text Available O objetivo deste trabalho foi avaliar o efeito da utilização de bactérias diazotróficas com ou sem molibdênio em duas cultivares de arroz com diferentes potenciais de fixação biológica de nitrogênio. Dois experimentos foram montados: o primeiro foi conduzido em condições gnotobióticas, com utilização das estirpes BR 11417 (ZAE94 - Herbaspirillum seropedicae e BR 11340 (M130 - Burkholderia sp., duas doses de molibdênio, 1,12 e 2,25 g, e duas fontes, molibdato de sódio e molibdato de amônio. As sementes foram peletizadas com inoculante turfoso com bactérias diazotróficas e o molibdênio. Em seguida as cultivares foram plantadas em tubos de ensaio com capacidade para 120 mL com 60 mL da solução de Hoagland sem nitrogênio por 30 dias. Foi avaliada a matéria seca das plantas. O segundo experimento foi conduzido em vasos em casa de vegetação, com as mesmas estirpes e dosagens de molibdênio. Foram avaliados a produção e o N total dos grãos. O delineamento estatístico foi inteiramente casualizado com quatro repetições e quatro plantas por vaso. Foram observados aumentos na produção de grãos nas cultivares IR42 e IAC4440 de 88 e 57%, respectivamente, com a adição ao inoculante turfoso, das estirpes ZAE94 e M130 com molibdênio.The objective of this work was to evaluate the effect of the inoculation of diazotrophic bacteria associated with the molybdenum in two rice cultivars. Two experiments were performed: the first one was lead under gnotobiotics conditions, using Herbaspirillum seropedicae, strain BR 11417 and Burkholderia sp., strain BR 11340, two doses of molybdenum (1.12 and 2.25 g and two different sources of Mo - sodium molybdate and ammonium molybdate. The seeds were pelleted with peat containing diazotrophic bacteria and molybdenum. After inoculations were seeds planted in to test tubes with capacity for 120 mL content 60 mL Hoagland solution without nitrogen. Seedlings were harvested after 30 days and plant

  6. The Effect of Chemical Applications on Cuticular and Epidermal Properties of Some Sweet Cherry Cultivars With Respect to Fruit Cracking Susceptibility

    OpenAIRE

    DEMİRSOY, Leyla; BİLGENER, Şükriye

    2000-01-01

    This study was carried out in Amasya during 1994 and 1995. The aim of this study was to determine the effect of various chemical applications before harvest on epidermal characteristics related with fruit cracking in some sweet cherry cultivars (0900 Ziraat, Lambert and Van). The trees of the cherry cultivars were sprayed with GA 3 (20 ppm), NAA (1 ppm), GA 3 +NAA (20+1 ppm), NAA+Ca(OH) 2 (1 ppm+0.7%), GA 3 +Ca(OH) 2 (20 ppm+0.7%) and GA 3 +NAA+Ca(OH) 2 (20 ppm+1ppm+0.7%) 30-35 days before...

  7. Períodos de drenagem do solo durante o perfilhamento e características agronômicas de cultivares de arroz irrigado no sistema pré-germinado Soil drainage periods during tillering and agronomic traits of rice cultivars grown with pre-germinated seeds

    Directory of Open Access Journals (Sweden)

    Luís Sangoi

    2008-02-01

    Full Text Available A retirada da água no perfilhamento é uma prática comumente efetuada pelos produtores de arroz irrigado no Estado de Santa Catarina, visando a estimular o enraizamento, prevenir o acamamento e facilitar a colheita. Contudo, ela pode estressar a cultura, reduzindo o número de perfilhos, a produção de panículas por área e a produtividade. Este trabalho foi conduzido objetivando avaliar os efeitos de períodos de drenagem do solo no perfilhamento sobre características agronômicas de duas cultivares de arroz de ciclos contrastantes. O experimento foi implantado no município de Pouso Redondo, localizado no Alto Vale do Itajaí, SC, durante os anos agrícolas de 2004/2005 e 2005/2006. Testaram-se quatro períodos de drenagem do solo no afilhamento: T1 = sem drenagem; T2 = drenagem aos 45 dias após a semeadura (DAS e retorno da irrigação 7 dias após; T3 = drenagem aos 45 DAS e retorno 14 dias após; e T4 = drenagem aos 45 DAS e retorno 20 dias após. Em cada sistema de manejo da irrigação, foram testadas as cultivares "EPAGRI 106" (precoce e "EPAGRI 109" (tardia. O rendimento de grãos variou entre 7.833 e 9.239kg ha-1 (2004/2005 e 3.984 e 9.040kg ha-1 (2005/2006. O sistema de manejo da irrigação no perfilhamento não interferiu sobre o rendimento de grãos e seus componentes, nem sobre a renda base e o rendimento de grãos inteiros. A elevada precipitação ocorrida durante o período de drenagem evitou a ocorrência de deficiência hídrica, mitigando o efeito do sistema de manejo da irrigação sobre o rendimento de grãos. As diferenças de ciclo entre as cutivares não afetaram a resposta das variáveis analisadas ao sistema de manejo da irrigação. Períodos de drenagem de até 20 dias no perfilhamento não reduzem a produtividade do arroz irrigado cultivado no sistema pré-germinado.The water withdraw is a management practice frequently used by rice growers in the State of Santa Catarina, Brazil. The water removal aims at

  8. El Silverio: nueva variedad de arroz para el trópico mexicano El Silverio: a new rice cultivar for the tropical areas of Mexico

    OpenAIRE

    José Luis García Angulo; Leonardo Hernández Aragón; Leticia Tavitas Fuentes

    2011-01-01

    El Silverio es una variedad de grano mediano con 10% de "panza blanca" y altamente versátil, ya que se puede cultivar en condiciones de temporal o temporal con riegos de auxilio en el trópico húmedo del sureste (Veracruz, Oaxaca, Tabasco, Campeche y Chiapas) y sub-húmedo del noreste (Tamaulipas), así como bajo riego en el trópico seco de la vertiente del pacífico (Nayarit, Jalisco, Colima y Michoacán). Su potencial de rendimiento medio es de 6 t ha-1 en condiciones de temporal, 7 t ha-1 en te...

  9. Identification of four functionally important microRNA families with contrasting differential expression profiles between drought-tolerant and susceptible rice leaf at vegetative stage.

    Science.gov (United States)

    Cheah, Boon Huat; Nadarajah, Kalaivani; Divate, Mayur Dashrath; Wickneswari, Ratnam

    2015-09-15

    Developing drought-tolerant rice varieties with higher yield under water stressed conditions provides a viable solution to serious yield-reduction impact of drought. Understanding the molecular regulation of this polygenic trait is crucial for the eventual success of rice molecular breeding programmes. microRNAs have received tremendous attention recently due to its importance in negative regulation. In plants, apart from regulating developmental and physiological processes, microRNAs have also been associated with different biotic and abiotic stresses. Hence here we chose to analyze the differential expression profiles of microRNAs in three drought treated rice varieties: Vandana (drought-tolerant), Aday Sel (drought-tolerant) and IR64 (drought-susceptible) in greenhouse conditions via high-throughput sequencing. Twenty-six novel microRNA candidates involved in the regulation of diverse biological processes were identified based on the detection of miRNA*. Out of their 110 predicted targets, we confirmed 16 targets from 5 novel microRNA candidates. In the differential expression analysis, mature microRNA members from 49 families of known Oryza sativa microRNA were differentially expressed in leaf and stem respectively with over 28 families having at least a similar mature microRNA member commonly found to be differentially expressed between both tissues. Via the sequence profiling data of leaf samples, we identified osa-miR397a/b, osa-miR398b, osa-miR408-5p and osa-miR528-5p as being down-regulated in two drought-tolerant rice varieties and up-regulated in the drought-susceptible variety. These microRNAs are known to be involved in regulating starch metabolism, antioxidant defence, respiration and photosynthesis. A wide range of biological processes were found to be regulated by the target genes of all the identified differentially expressed microRNAs between both tissues, namely root development (5.3-5.7 %), cell transport (13.2-18.4 %), response to stress (10

  10. Effect of volunteer rice infestation on grain quality and yield of rice

    Science.gov (United States)

    Volunteer rice (Oryza sativa L.) plants arise from shattered seeds of the previous crop, which could reduce the yield of cultivated rice and the commercial value of harvested grain. Volunteer rice plants from a cultivar other than the current crop produce grains that may differ in physico-chemical t...

  11. Effect of temperature and time immersion of stage soaking on color grains of upland rice parboiled cultivars/ Efeito da temperatura e do tempo de imersão da etapa de encharcamento sobre a cor dos grãos de arroz parboilizado de cultivares de terras altas

    Directory of Open Access Journals (Sweden)

    Priscila Zaczuk Bassinelo

    Full Text Available The parboiling is the hydrothermal treatment of paddy before processing. The objective of this study was to evaluate the influence of the temperature and immersion time step of soaking (independent variables on the color of the grain parboiled (dependent variable cultivars of upland rice (BRS Primavera and BRS Sertaneja. A central composite rotational design (DCCR was used, which includes a 22 full factorial, three replicates at the center point and four axial points, making eleven treatments. It was considered for the selection of hydrothermal conditions to be studied, the criterion of water absorption in the age group from 28% - 32%. In extreme conditions of soaking (high temperature and immersion time was observed in general that the grains of parboiled rice had higher color difference for the samples of grains of white rice. Therefore, the use of temperatures below 65 °C during the soaking tend to have grains with milder browning. After parboiling under different conditions of temperature and time of soaking, the change of color (?E* was greater in cv. BRS Sertaneja. It is possible to produce grains with different shades, depending on the conditions used. The choice will depend on the application that is intended or products in wich the rice will be employed.A parboilização consiste no tratamento hidrotérmico do arroz em casca antes do beneficiamento. O objetivo deste estudo foi avaliar a influência das variáveis temperatura e tempo de imersão da etapa de encharcamento sobre a cor dos grãos parboilizados de cultivares de arroz de terras altas (BRS Primavera e BRS Sertaneja. Utilizou-se um delineamento composto central rotacional (DCCR, que inclui um fatorial completo 22, mais três repetições no ponto central e quatro pontos axiais, totalizando onze tratamentos. Considerou-se para seleção das condições hidrotérmicas, o critério de absorção de água na faixa de 28% – 32%. Nas condições extremas do encharcamento (elevada

  12. Bioactive compounds in pigmented rice bran inhibit growth of human cancer cells

    Science.gov (United States)

    Rice bran contains both lipophilic and hydrophilic antioxidants. Our previous studies have shown that pigmented rice cultivars contained several-fold higher total phenolic concentrations and antioxidant capacities than non-pigmented cultivars. We investigated three rice brans (purple, red and light-...

  13. Comparative analysis of root transcriptome profiles of two pairs of drought-tolerant and susceptible rice near-isogenic lines under different drought stress.

    Science.gov (United States)

    Moumeni, Ali; Satoh, Kouji; Kondoh, Hiroaki; Asano, Takayuki; Hosaka, Aeni; Venuprasad, Ramiah; Serraj, Rachid; Kumar, Arvind; Leung, Hei; Kikuchi, Shoshi

    2011-12-02

    Plant roots are important organs to uptake soil water and nutrients, perceiving and transducing of soil water deficit signals to shoot. The current knowledge of drought stress transcriptomes in rice are mostly relying on comparative studies of diverse genetic background under drought. A more reliable approach is to use near-isogenic lines (NILs) with a common genetic background but contrasting levels of resistance to drought stress under initial exposure to water deficit. Here, we examined two pairs of NILs in IR64 background with contrasting drought tolerance. We obtained gene expression profile in roots of rice NILs under different levels of drought stress help to identify genes and mechanisms involved in drought stress. Global gene expression analysis showed that about 55% of genes differentially expressed in roots of rice in response to drought stress treatments. The number of differentially expressed genes (DEGs) increased in NILs as the level of water deficits, increased from mild to severe condition, suggesting that more genes were affected by increasing drought stress. Gene onthology (GO) test and biological pathway analysis indicated that activated genes in the drought tolerant NILs IR77298-14-1-2-B-10 and IR77298-5-6-B-18 were mostly involved in secondary metabolism, amino acid metabolism, response to stimulus, defence response, transcription and signal transduction, and down-regulated genes were involved in photosynthesis and cell wall growth. We also observed gibberellic acid (GA) and auxin crosstalk modulating lateral root formation in the tolerant NILs. Transcriptome analysis on two pairs of NILs with a common genetic background (~97%) showed distinctive differences in gene expression profiles and could be effective to unravel genes involved in drought tolerance. In comparison with the moderately tolerant NIL IR77298-5-6-B-18 and other susceptible NILs, the tolerant NIL IR77298-14-1-2-B-10 showed a greater number of DEGs for cell growth, hormone

  14. Comparative analysis of root transcriptome profiles of two pairs of drought-tolerant and susceptible rice near-isogenic lines under different drought stress

    Directory of Open Access Journals (Sweden)

    Moumeni Ali

    2011-12-01

    Full Text Available Abstract Background Plant roots are important organs to uptake soil water and nutrients, perceiving and transducing of soil water deficit signals to shoot. The current knowledge of drought stress transcriptomes in rice are mostly relying on comparative studies of diverse genetic background under drought. A more reliable approach is to use near-isogenic lines (NILs with a common genetic background but contrasting levels of resistance to drought stress under initial exposure to water deficit. Here, we examined two pairs of NILs in IR64 background with contrasting drought tolerance. We obtained gene expression profile in roots of rice NILs under different levels of drought stress help to identify genes and mechanisms involved in drought stress. Results Global gene expression analysis showed that about 55% of genes differentially expressed in roots of rice in response to drought stress treatments. The number of differentially expressed genes (DEGs increased in NILs as the level of water deficits, increased from mild to severe condition, suggesting that more genes were affected by increasing drought stress. Gene onthology (GO test and biological pathway analysis indicated that activated genes in the drought tolerant NILs IR77298-14-1-2-B-10 and IR77298-5-6-B-18 were mostly involved in secondary metabolism, amino acid metabolism, response to stimulus, defence response, transcription and signal transduction, and down-regulated genes were involved in photosynthesis and cell wall growth. We also observed gibberellic acid (GA and auxin crosstalk modulating lateral root formation in the tolerant NILs. Conclusions Transcriptome analysis on two pairs of NILs with a common genetic background (~97% showed distinctive differences in gene expression profiles and could be effective to unravel genes involved in drought tolerance. In comparison with the moderately tolerant NIL IR77298-5-6-B-18 and other susceptible NILs, the tolerant NIL IR77298-14-1-2-B-10 showed

  15. RNA interference knockdown of aminopeptidase N genes decrease the susceptibility of Chilo suppressalis larvae to Cry1Ab/Cry1Ac and Cry1Ca-expressing transgenic rice.

    Science.gov (United States)

    Qiu, Lin; Fan, Jinxing; Zhang, Boyao; Liu, Lang; Wang, Xiaoping; Lei, Chaoliang; Lin, Yongjun; Ma, Weihua

    2017-05-01

    Transgenic rice expressing Bacillus thuringiensis (Bt) Cry toxins are resistant to lepidopteran pests, such as Chilo suppressalis, a major insect pest of rice in Asia. Understanding how these toxins interact with their hosts is crucial to understanding their insecticidal action. In this study, knockdown of two aminopeptidase N genes (APN1 and APN2) by RNA interference resulted in decreased susceptibility of C. suppressalis larvae to the Bt rice varieties TT51 (Cry1Ab and Cry1Ac fusion genes) and T1C-19 (Cry1Ca), but not T2A-1 (Cry2Aa). This suggests that APN1 and APN2 are receptors for Cry1A and Cry1C toxins in C. suppressalis. Copyright © 2017 Elsevier Inc. All rights reserved.

  16. Susceptibility of Different Populations of Nilaparvata lugens from Major Rice Growing Areas of Karnataka, India to Different Groups of Insecticides

    Directory of Open Access Journals (Sweden)

    Y.S. BASANTH

    2013-09-01

    Full Text Available Susceptibility to insecticides was investigated by collecting field populations of brown planthopper from different locations of southern Karnataka, India (Gangavati, Kathalagere, Kollegala, Soraba and Mandya. All the field populations differed in their susceptibility to insecticides. In general, Soraba and Mandya populations were more susceptible to insecticides compared to Gangavati and Kathalagere populations. The resistance ratios varied greatly among the populations viz., chlorpyriphos (1.13- to 16.82-fold, imidacloprid (0.53- to 13.50-fold, acephate (1.34- to 5.32-fold, fipronil (1.13- to 4.06-fold, thiamethoxam (1.01- to 2.19-fold, clothianidin (1.92- to 4.86-fold, dinotefuran (0.82- to 2.22-fold, buprofezin (1.06- to 5.43-fold and carbofuran (0.41- to 2.17-fold. The populations from Gangavati, Kathalagere and Kollegala exhibited higher resistance to some of the old insecticides and low resistance to new molecules.

  17. Fourie susceptible.pmd

    African Journals Online (AJOL)

    Prof. Adipala Ekwamu

    a number of cultivars exhibited field resistance to halo blight and bacterial brown spot, all cultivars were more or less susceptible to .... Cerillos. Alubia. I. 91. 57. Kranskop. Red speckled sugar. II. 97. 63. OPS-RS1. Red speckled sugar. II. 96. 63. OPS-RS2. Red speckled sugar. I. 100. 61. OPS-RS3. Red speckled sugar. II. 97.

  18. [In vitro susceptibility of Trichoconiella padwickii to various active ingredients used as fungicides in the cultivation of rice].

    Science.gov (United States)

    Lovato Echeverria, Alfonso D; Gutiérrez, Susana A; Carmona, Marcelo A

    The aim of this study was to evaluate in vitro the mycelial susceptibility of Trichoconiella padwickii to different active ingredients through average median concentration IC50 calculation. Inoculum disks were seeded on bean agar at different concentrations (0.1; 1; 10; 30, 50; 100 and 1000mg/l) of various fungicides. After seven days the colony diameter was measured. The data obtained were fitted to nonlinear regression models. Susceptibility was classified using the scale proposed by Edgington. The results show that the pathogen is very sensitive to products that act on the respiratory chain (quinone outside inhibitors [QoI] and succinate dehydrogenase inhibitors [SDHI]) and cell membrane (multi-site contact activity), and moderately sensitive to those products interfering with cell division (methyl benzimidazole carbamates [MBC]), synthesis of nucleic acids (phenylamides [PA]) and osmotic signal transduction (multi-site contact activity). This work is the first record on the sensitivity of T. padwickii. Copyright © 2017 Asociación Argentina de Microbiología. Publicado por Elsevier España, S.L.U. All rights reserved.

  19. Marker-assisted selection for the rice blast resistance gene Pi-ar in a backcross population

    Directory of Open Access Journals (Sweden)

    Leila Garcês de Araújo

    2010-01-01

    Full Text Available A doubled-haploid (DH population, obtained by anther culture of F1 plants from a cross between a highlysusceptible rice cultivar Lijiangxintuanheigu and the resistant somaclone (SC09, of the cultivar Araguaia, was used to identifyRAPD markers linked to the blast resistance gene Pi-ar. The 86 DH plants, inoculated with the race IB-9 of Magnaportheoryzae, segregated in 1:1 ratio of resistant and susceptible plants. Of the 67 primers used 31 produced DNA profiles thatdifferentiated resistant and susceptible bulks as well as the parental cultivars. The resistance gene was found linked to theprimer OPS162072 (‘AGGGGGTTCC’ at a distance of 3.6 cM. The selection efficiency of this primer was assessed in a BC3 F1population derived from another cross between a susceptible cultivar IAC 201 and SC09. The marker OPS16 showedefficiency of 86.9%, when six resistant and two susceptible plants were considered as negatives in RAPD analysis.

  20. Altered Cultivar Resistance of Kimchi Cabbage Seedlings Mediated by Salicylic Acid, Jasmonic Acid and Ethylene

    Directory of Open Access Journals (Sweden)

    Young Hee Lee

    2014-09-01

    Full Text Available Two cultivars Buram-3-ho (susceptible and CR-Hagwang (moderate resistant of kimchi cabbage seedlings showed differential defense responses to anthracnose (Colletotrichum higginsianum, black spot (Alternaria brassicicola and black rot (Xanthomonas campestris pv. campestris, Xcc diseases in our previous study. Defense-related hormones salicylic acid (SA, jasmonic acid (JA and ethylene led to different transcriptional regulation of pathogenesis-related (PR gene expression in both cultivars. In this study, exogenous application of SA suppressed basal defenses to C. higginsianum in the 1st leaves of the susceptible cultivar and cultivar resistance of the 2nd leaves of the resistant cultivar. SA also enhanced susceptibility of the susceptible cultivar to A. brassicicola. By contrast, SA elevated disease resistance to Xcc in the resistant cultivar, but not in the susceptible cultivar. Methyl jasmonate (MJ treatment did not affect the disease resistance to C. higginsianum and Xcc in either cultivar, but it compromised the disease resistance to A. brassicicola in the resistant cultivar. Treatment with 1-aminocyclopropane-1-carboxylic acid (ACC ethylene precursor did not change resistance of the either cultivar to C. higginsianum and Xcc. Effect of ACC pretreatment on the resistance to A. brassicicola was not distinguished between susceptible and resistant cultivars, because cultivar resistance of the resistant cultivar was lost by prolonged moist dark conditions. Taken together, exogenously applied SA, JA and ethylene altered defense signaling crosstalk to three diseases of anthracnose, black spot and black rot in a cultivar-dependent manner.

  1. Survey of rice blast race identity for blast resistance gene identification in the USA and Puerto Rico

    Science.gov (United States)

    Rice blast disease is a significant threat to stable rice production in the USA and worldwide. The major resistance gene (Pi-ta) located within a cluster of resistance genes on rice chromosome 12 has been demonstrated to confer resistance to the rice blast disease. Katy, a rice cultivar released in ...

  2. Against the grain: safeguarding rice from rice blast disease.

    Science.gov (United States)

    Skamnioti, Pari; Gurr, Sarah J

    2009-03-01

    Rice is the staple diet of more than three billion people. Yields must double over the next 40 years if we are to sustain the nutritional needs of the ever-expanding global population. Between 10% and 30% of the annual rice harvest is lost due to infection by the rice blast fungus Magnaporthe oryzae. Evaluation of genetic and virulence diversity of blast populations with diagnostic markers will aid disease management. We review the M. oryzae species-specific and cultivar-specific avirulence determinants and evaluate efforts towards generating durable and broad-spectrum resistance in single resistant cultivars or mixtures. We consider modern usage of fungicides and plant defence activators, assess the usefulness of biological control and categorize current approaches towards blast-tolerant genetically modified rice.

  3. Resistance of upland-rice lines to root-knot nematode, Meloidogyne incognita.

    Science.gov (United States)

    Souza, D C T; Botelho, F B S; Rodrigues, C S; Furtini, I V; Smiderle, E C; de Matos, D L; Bruzi, A T

    2015-12-21

    Despite the benefits of crop rotation, occurrence of nematodes is a common problem for almost all crops within the Cerrado biome, especially for rice. The use of resistant cultivars is one of the main methods for control of nematodes. Thus, the present study aimed to evaluate the reaction of 36 upland-rice lines, with desirable agronomic characteristics, according to their resistance to root-knot nematodes (Meloidogyne incognita). The experimental design was entirely randomized with four replications. Each plot of land consisted of two rice plants in a 3-L vase. The plants were inoculated with 1000 eggs and eventual juveniles of the respective nematodes. Fifty-five days after the inoculation, the roots and the aerial part of the plant were weighed and the egg mass (EM) as well as the reproduction factor (Rf) were estimated. It was determined that the isolated use of EM was not beneficial in selecting rice lines resistant to the root-knot nematode. This procedure must, therefore, take into account the egg counting and the Rf, in order to improve the reliability of the selection. In our study, 30 evaluated lines were observed to be resistant. Among the recommended cultivars, only BRS Monarca had its performance susceptible to the studied nematode species.

  4. Developing selection protocols for weed competitiveness in aerobic rice

    NARCIS (Netherlands)

    Zhao, D.L.; Atlin, G.N.; Bastiaans, L.; Spiertz, J.H.J.

    2006-01-01

    Aerobic rice production systems, wherein rice is dry-sown in non-puddled soil and grown as an upland crop, offer large water savings but are subject to severe weed infestation. Weed-competitive cultivars will be critical to the adoption of aerobic rice production by farmers. Breeding

  5. Impact of milling and water-to-rice ratio on cooked rice and wastewater properties.

    Science.gov (United States)

    Altheide, M C; Morawicki, R O; Hager, T J

    2012-06-01

    Due to the environmental concerns and expense associated with the disposal of wastewater after industrial cooking of rice, the purpose of this study was to evaluate the extent of leaching, water uptake and volumetric expansion of rice during cooking at various milling durations and water-to-rice ratios. Two cultivars of Arkansas rice, a long grain (Francis) and a medium grain (Jupiter), were milled for 10, 20, and 30 s with a laboratory mill. Samples were cooked in aluminum foil covered beakers at water-to-rice ratios of 10:1, 15:1, and 20:1. After 20 min, rice was weighed for water uptake and measured for volumetric expansion using hexane displacement. The excess cooking water was evaluated for total solids, amylose, and protein to determine the extent of leaching. Water uptake and volumetric expansion significantly increased with milling duration in both cultivars. Leached solids increased as the water-to-rice ratio increased in Francis and increased with milling duration in Jupiter; however, the amylose content of leached solids was unaffected by the water-to-rice ratio in both cultivars. Thus, shorter milling durations may limit the extent of leaching during cooking, as observed with Jupiter, while a lower water-to-rice ratio may reduce wastewater contamination for cultivars similar to Francis.

  6. Historical contingencies modulate the adaptability of Rice yellow mottle virus.

    Directory of Open Access Journals (Sweden)

    Nils Poulicard

    2012-01-01

    Full Text Available The rymv1-2 and rymv1-3 alleles of the RYMV1 resistance to Rice yellow mottle virus (RYMV, coded by an eIF(iso4G1 gene, occur in a few cultivars of the Asiatic (Oryza sativa and African (O. glaberrima rice species, respectively. The most salient feature of the resistance breaking (RB process is the converse genetic barrier to rymv1-2 and rymv1-3 resistance breakdown. This specificity is modulated by the amino acid (glutamic acid vs. threonine at codon 49 of the Viral Protein genome-linked (VPg, a position which is adjacent to the virulence codons 48 and 52. Isolates with a glutamic acid (E do not overcome rymv1-3 whereas those with a threonine (T rarely overcome rymv1-2. We found that isolates with T49 had a strong selective advantage over isolates with E49 in O. glaberrima susceptible cultivars. This explains the fixation of the mutation T49 during RYMV evolution and accounts for the diversifying selection estimated at codon 49. Better adapted to O. glaberrima, isolates with T49 are also more prone than isolates with E49 to fix rymv1-3 RB mutations at codon 52 in resistant O. glaberrima cultivars. However, subsequent genetic constraints impaired the ability of isolates with T49 to fix rymv1-2 RB mutations at codons 48 and 52 in resistant O. sativa cultivars. The origin and role of the amino acid at codon 49 of the VPg exemplifies the importance of historical contingencies in the ability of RYMV to overcome RYMV1 resistance.

  7. Transgenic rice expressing Allium sativum leaf agglutinin (ASAL) exhibits high-level resistance against major sap-sucking pests

    Science.gov (United States)

    Yarasi, Bharathi; Sadumpati, Vijayakumar; Immanni, China Pasalu; Vudem, Dasavantha Reddy; Khareedu, Venkateswara Rao

    2008-01-01

    Background Rice (Oryza sativa) productivity is adversely impacted by numerous biotic and abiotic factors. An approximate 52% of the global production of rice is lost annually owing to the damage caused by biotic factors, of which ~21% is attributed to the attack of insect pests. In this paper we report the isolation, cloning and characterization of Allium sativum leaf agglutinin (asal) gene, and its expression in elite indica rice cultivars using Agrobacterium-mediated genetic transformation method. The stable transgenic lines, expressing ASAL, showed explicit resistance against major sap-sucking pests. Results Allium sativum leaf lectin gene (asal), coding for mannose binding homodimeric protein (ASAL) from garlic plants, has been isolated and introduced into elite indica rice cultivars susceptible to sap-sucking insects, viz., brown planthopper (BPH), green leafhopper (GLH) and whitebacked planthopper (WBPH). Embryogenic calli of rice were co-cultivated with Agrobacterium harbouring pSB111 super-binary vector comprising garlic lectin gene asal along with the herbicide resistance gene bar, both under the control of CaMV35S promoter. PCR and Southern blot analyses confirmed stable integration of transgenes into the genomes of rice plants. Northern and western blot analyses revealed expression of ASAL in different transgenic rice lines. In primary transformants, the level of ASAL protein, as estimated by enzyme-linked immunosorbent assay, varied between 0.74% and 1.45% of the total soluble proteins. In planta insect bioassays on transgenic rice lines revealed potent entomotoxic effects of ASAL on BPH, GLH and WBPH insects, as evidenced by significant decreases in the survival, development and fecundity of the insects. Conclusion In planta insect bioassays were carried out on asal transgenic rice lines employing standard screening techniques followed in conventional breeding for selection of insect resistant plants. The ASAL expressing rice plants, bestowed with high

  8. Transgenic rice expressing Allium sativum leaf agglutinin (ASAL exhibits high-level resistance against major sap-sucking pests

    Directory of Open Access Journals (Sweden)

    Vudem Dasavantha

    2008-10-01

    Full Text Available Abstract Background Rice (Oryza sativa productivity is adversely impacted by numerous biotic and abiotic factors. An approximate 52% of the global production of rice is lost annually owing to the damage caused by biotic factors, of which ~21% is attributed to the attack of insect pests. In this paper we report the isolation, cloning and characterization of Allium sativum leaf agglutinin (asal gene, and its expression in elite indica rice cultivars using Agrobacterium-mediated genetic transformation method. The stable transgenic lines, expressing ASAL, showed explicit resistance against major sap-sucking pests. Results Allium sativum leaf lectin gene (asal, coding for mannose binding homodimeric protein (ASAL from garlic plants, has been isolated and introduced into elite indica rice cultivars susceptible to sap-sucking insects, viz., brown planthopper (BPH, green leafhopper (GLH and whitebacked planthopper (WBPH. Embryogenic calli of rice were co-cultivated with Agrobacterium harbouring pSB111 super-binary vector comprising garlic lectin gene asal along with the herbicide resistance gene bar, both under the control of CaMV35S promoter. PCR and Southern blot analyses confirmed stable integration of transgenes into the genomes of rice plants. Northern and western blot analyses revealed expression of ASAL in different transgenic rice lines. In primary transformants, the level of ASAL protein, as estimated by enzyme-linked immunosorbent assay, varied between 0.74% and 1.45% of the total soluble proteins. In planta insect bioassays on transgenic rice lines revealed potent entomotoxic effects of ASAL on BPH, GLH and WBPH insects, as evidenced by significant decreases in the survival, development and fecundity of the insects. Conclusion In planta insect bioassays were carried out on asal transgenic rice lines employing standard screening techniques followed in conventional breeding for selection of insect resistant plants. The ASAL expressing rice

  9. Transgenic rice expressing Allium sativum leaf agglutinin (ASAL) exhibits high-level resistance against major sap-sucking pests.

    Science.gov (United States)

    Yarasi, Bharathi; Sadumpati, Vijayakumar; Immanni, China Pasalu; Vudem, Dasavantha Reddy; Khareedu, Venkateswara Rao

    2008-10-14

    Rice (Oryza sativa) productivity is adversely impacted by numerous biotic and abiotic factors. An approximate 52% of the global production of rice is lost annually owing to the damage caused by biotic factors, of which approximately 21% is attributed to the attack of insect pests. In this paper we report the isolation, cloning and characterization of Allium sativum leaf agglutinin (asal) gene, and its expression in elite indica rice cultivars using Agrobacterium-mediated genetic transformation method. The stable transgenic lines, expressing ASAL, showed explicit resistance against major sap-sucking pests. Allium sativum leaf lectin gene (asal), coding for mannose binding homodimeric protein (ASAL) from garlic plants, has been isolated and introduced into elite indica rice cultivars susceptible to sap-sucking insects, viz., brown planthopper (BPH), green leafhopper (GLH) and whitebacked planthopper (WBPH). Embryogenic calli of rice were co-cultivated with Agrobacterium harbouring pSB111 super-binary vector comprising garlic lectin gene asal along with the herbicide resistance gene bar, both under the control of CaMV35S promoter. PCR and Southern blot analyses confirmed stable integration of transgenes into the genomes of rice plants. Northern and western blot analyses revealed expression of ASAL in different transgenic rice lines. In primary transformants, the level of ASAL protein, as estimated by enzyme-linked immunosorbent assay, varied between 0.74% and 1.45% of the total soluble proteins. In planta insect bioassays on transgenic rice lines revealed potent entomotoxic effects of ASAL on BPH, GLH and WBPH insects, as evidenced by significant decreases in the survival, development and fecundity of the insects. In planta insect bioassays were carried out on asal transgenic rice lines employing standard screening techniques followed in conventional breeding for selection of insect resistant plants. The ASAL expressing rice plants, bestowed with high entomotoxic

  10. Serine Proteases-Like Genes in the Asian Rice Gall Midge Show Differential Expression in Compatible and Incompatible Interactions with Rice

    Directory of Open Access Journals (Sweden)

    Suresh Nair

    2011-04-01

    Full Text Available The Asian rice gall midge, Orseolia oryzae (Wood-Mason, is a serious pest of rice. Investigations into the gall midge-rice interaction will unveil the underlying molecular mechanisms which, in turn, can be used as a tool to assist in developing suitable integrated pest management strategies. The insect gut is known to be involved in various physiological and biological processes including digestion, detoxification and interaction with the host. We have cloned and identified two genes, OoprotI and OoprotII, homologous to serine proteases with the conserved His87, Asp136 and Ser241 residues. OoProtI shared 52.26% identity with mosquito-type trypsin from Hessian fly whereas OoProtII showed 52.49% identity to complement component activated C1s from the Hessian fly. Quantitative real time PCR analysis revealed that both the genes were significantly upregulated in larvae feeding on resistant cultivar than in those feeding on susceptible cultivar. These results provide an opportunity to understand the gut physiology of the insect under compatible or incompatible interactions with the host. Phylogenetic analysis grouped these genes in the clade containing proteases of phytophagous insects away from hematophagous insects.

  11. Serine proteases-like genes in the asian rice gall midge show differential expression in compatible and incompatible interactions with rice.

    Science.gov (United States)

    Sinha, Deepak Kumar; Lakshmi, Mulagondla; Anuradha, Ghanta; Rahman, Shaik J; Siddiq, Ebrahimali A; Bentur, Jagadish S; Nair, Suresh

    2011-01-01

    The Asian rice gall midge, Orseolia oryzae (Wood-Mason), is a serious pest of rice. Investigations into the gall midge-rice interaction will unveil the underlying molecular mechanisms which, in turn, can be used as a tool to assist in developing suitable integrated pest management strategies. The insect gut is known to be involved in various physiological and biological processes including digestion, detoxification and interaction with the host. We have cloned and identified two genes, OoprotI and OoprotII, homologous to serine proteases with the conserved His(87), Asp(136) and Ser(241) residues. OoProtI shared 52.26% identity with mosquito-type trypsin from Hessian fly whereas OoProtII showed 52.49% identity to complement component activated C1s from the Hessian fly. Quantitative real time PCR analysis revealed that both the genes were significantly upregulated in larvae feeding on resistant cultivar than in those feeding on susceptible cultivar. These results provide an opportunity to understand the gut physiology of the insect under compatible or incompatible interactions with the host. Phylogenetic analysis grouped these genes in the clade containing proteases of phytophagous insects away from hematophagous insects.

  12. Picadas de alimentação de Nezara viridula em cultivares e linhagens de soja de diferentes graus de suscetibilidade Stylet sheath op Nezara viridula in resistant and susceptible soybean varieties

    Directory of Open Access Journals (Sweden)

    C. J. Rossetto

    1981-01-01

    Full Text Available O número de vezes que o percevejo-verde Nezara viridula (L., 1758 (Hemiptera: Pentatomidae se alimentou em cinco diferentes genótipos de soja foi estimado através das bainhas do estilete que permaneceram no local onde ele se alimentou. Foram feitas estimativas a olho nu, através de lupa sem corante e através de lupa após tratamento das vagens com corante de fucsina ácida, como foi proposto por BOWLING. A olho nu, notaram-se distintamente os locais das picadas nos cultivares Paraná e Hill e muito poucas picadas nas linhagens IAC 73/228 e IAC 77/656. A primeira geração do cruzamento entre 'Paraná' e IAC 73/228 apresentou comportamento intermediário, quando observada sem corante. Após tratarem-se as vagens com corante, ficou reduzida a diferenciação entre as linhagens IAO e os cultivares Hill e Paraná, enquanto a geração F1 deixou de ser intermediária e igualou-se aos cultivares suscetíveis. Os resultados sugerem a presença de um grau alto de tolerância à alimentação de percevejo nas linhagens IAC 73/228 e IAC 77/656.The number of stylet sheaths of Nezara viridula (L., 1758 (Hemiptera: Pentatomidae in 5 soybean (Glycine max (L. Merrill varieties was estimated under greenhouse conditions, at Campinas, State of São Paulo, Brazil. When estimated with naked eyes, the number of stylet sheaths was low in the varieties IAC 73/228 and IAC 77/656, high in the commercial varieties 'Hill' and 'Paraná' and intermediate in the F1 generation between Paraná and IAC 73/228. When estimated under the stereo microscope after staining the pods with acid fucsin, the number of stylet sheaths was high in the commercial varieties 'Hill', 'Paraná' and the F1. It was intermediate in IAC 73/228 and IAC 77/656. It seems from these results that a moderate degree of non preference for feeding might be present in the varieties IAC 73/228 and IAC 77/656, but further research is needed to support or to reject the existence of this moderate degree of

  13. qEMF3, a novel QTL for the early-morning flowering trait from wild rice, Oryza officinalis, to mitigate heat stress damage at flowering in rice, O. sativa.

    Science.gov (United States)

    Hirabayashi, Hideyuki; Sasaki, Kazuhiro; Kambe, Takashi; Gannaban, Ritchel B; Miras, Monaliza A; Mendioro, Merlyn S; Simon, Eliza V; Lumanglas, Patrick D; Fujita, Daisuke; Takemoto-Kuno, Yoko; Takeuchi, Yoshinobu; Kaji, Ryota; Kondo, Motohiko; Kobayashi, Nobuya; Ogawa, Tsugufumi; Ando, Ikuo; Jagadish, Krishna S V; Ishimaru, Tsutomu

    2015-03-01

    A decline in rice (Oryza sativa L.) production caused by heat stress is one of the biggest concerns resulting from future climate change. Rice spikelets are most susceptible to heat stress at flowering. The early-morning flowering (EMF) trait mitigates heat-induced spikelet sterility at the flowering stage by escaping heat stress during the daytime. We attempted to develop near-isogenic lines (NILs) for EMF in the indica-type genetic background by exploiting the EMF locus from wild rice, O. officinalis (CC genome). A stable quantitative trait locus (QTL) for flower opening time (FOT) was detected on chromosome 3. A QTL was designated as qEMF3 and it shifted FOT by 1.5-2.0 h earlier for cv. Nanjing 11 in temperate Japan and cv. IR64 in the Philippine tropics. NILs for EMF mitigated heat-induced spikelet sterility under elevated temperature conditions completing flower opening before reaching 35°C, a general threshold value leading to spikelet sterility. Quantification of FOT of cultivars popular in the tropics and subtropics did not reveal the EMF trait in any of the cultivars tested, suggesting that qEMF3 has the potential to advance FOT of currently popular cultivars to escape heat stress at flowering under future hotter climates. This is the first report to examine rice with the EMF trait through marker-assisted breeding using wild rice as a genetic resource. © The Author 2014. Published by Oxford University Press on behalf of the Society for Experimental Biology.

  14. Transcriptional profile of Pseudomonas syringae pv. phaseolicola NPS3121 in response to tissue extracts from a susceptible Phaseolus vulgaris L. cultivar

    Directory of Open Access Journals (Sweden)

    Martínez-Antonio Agustino

    2009-12-01

    Full Text Available Abstract Background Pseudomonas syringae pv. phaseolicola is a Gram-negative plant-pathogenic bacterium that causes "halo blight" disease of beans (Phaseolus vulgaris L.. This disease affects both foliage and pods, and is a major problem in temperate areas of the world. Although several bacterial genes have been determined as participants in pathogenesis, the overall process still remains poorly understood, mainly because the identity and function of many of the genes are largely unknown. In this work, a genomic library of P. syringae pv. phaseolicola NPS3121 was constructed and PCR amplification of individual fragments was carried out in order to print a DNA microarray. This microarray was used to identify genes that are differentially expressed when bean leaf extracts, pod extracts or apoplastic fluid were added to the growth medium. Results Transcription profiles show that 224 genes were differentially expressed, the majority under the effect of bean leaf extract and apoplastic fluid. Some of the induced genes were previously known to be involved in the first stages of the bacterial-plant interaction and virulence. These include genes encoding type III secretion system proteins and genes involved in cell-wall degradation, phaseolotoxin synthesis and aerobic metabolism. On the other hand, most repressed genes were found to be involved in the uptake and metabolism of iron. Conclusion This study furthers the understanding of the mechanisms involved, responses and the metabolic adaptation that occurs during the interaction of P. syringae pv. phaseolicola with a susceptible host plant.

  15. Evolutionary and social consequences of introgression of nontransgenic herbicide resistance from rice to weedy rice in Brazil.

    Science.gov (United States)

    Merotto, Aldo; Goulart, Ives C G R; Nunes, Anderson L; Kalsing, Augusto; Markus, Catarine; Menezes, Valmir G; Wander, Alcido E

    2016-08-01

    Several studies have expressed concerns about the effects of gene flow from transgenic herbicide-resistant crops to their wild relatives, but no major problems have been observed. This review describes a case study in which what has been feared in transgenics regarding gene flow has actually changed biodiversity and people's lives. Nontransgenic imidazolinone-resistant rice (IMI-rice) cultivars increased the rice grain yield by 50% in southern Brazil. This increase was beneficial for life quality of the farmers and also improved the regional economy. However, weedy rice resistant to imidazolinone herbicides started to evolve three years after the first use of IMI-rice cultivars. Population genetic studies indicate that the herbicide-resistant weedy rice was mainly originated from gene flow from resistant cultivars and distributed by seed migration. The problems related with herbicide-resistant weedy rice increased the production costs of rice that forced farmers to sell or rent their land. Gene flow from cultivated rice to weedy rice has proven to be a large agricultural, economic, and social constraint in the use of herbicide-resistant technologies in rice. This problem must be taken into account for the development of new transgenic or nontransgenic rice technologies.

  16. Root distribution and interactions between allelopathic rice and c4 grass weed species as determined by 13c isotope discrimination analysis

    Science.gov (United States)

    Cultivars which carry allelopathic traits (traits that enable them to suppress weeds) could improve the economical management and sustainability of rice production. Interactions between roots of rice and weeds are thought to be modulated by the weed-suppressive activity of some rice cultivars, but ...

  17. Comparative transcriptome profiling of a resistant vs. susceptible tomato (Solanum lycopersicum cultivar in response to infection by tomato yellow leaf curl virus.

    Directory of Open Access Journals (Sweden)

    Tianzi Chen

    Full Text Available Tomato yellow leaf curl virus (TYLCV threatens tomato production worldwide by causing leaf yellowing, leaf curling, plant stunting and flower abscission. The current understanding of the host plant defense response to this virus is very limited. Using whole transcriptome sequencing, we analyzed the differential gene expression in response to TYLCV infection in the TYLCV-resistant tomato breeding line CLN2777A (R and TYLCV-susceptible tomato breeding line TMXA48-4-0 (S. The mixed inoculated samples from 3, 5 and 7 day post inoculation (dpi were compared to non-inoculated samples at 0 dpi. Of the total of 34831 mapped transcripts, 209 and 809 genes were differentially expressed in the R and S tomato line, respectively. The proportion of up-regulated differentially expressed genes (DEGs in the R tomato line (58.37% was higher than that in the S line (9.17%. Gene ontology (GO analyses revealed that similar GO terms existed in both DEGs of R and S lines; however, some sets of defense related genes and their expression levels were not similar between the two tomato lines. Genes encoding for WRKY transcriptional factors, R genes, protein kinases and receptor (-like kinases which were identified as down-regulated DEGs in the S line were up-regulated or not differentially expressed in the R line. The up-regulated DEGs in the R tomato line revealed the defense response of tomato to TYLCV infection was characterized by the induction and regulation of a series of genes involved in cell wall reorganization, transcriptional regulation, defense response, ubiquitination, metabolite synthesis and so on. The present study provides insights into various reactions underlining the successful establishment of resistance to TYLCV in the R tomato line, and helps in the identification of important defense-related genes in tomato for TYLCV disease management.

  18. Selection of Desirable Cultivar for Organic Cultivation of Carrot

    Directory of Open Access Journals (Sweden)

    Byung Sup Kim

    2011-04-01

    Full Text Available This research was carried out to selection of desirable cultivar for organic cultivation of carrot in Korea. The assay of disease resistance, insect tolerance and rate of bolting were investigated on 32 cultivars of genetic resources of carrot. This experiment was carried out at experimental field and greenhouse of Gangneung- Wonju National University. ``PI 223360`` was resistant against powdery mildew. Ten cultivars including ``Oxheart Carrot Heirloom`` were moderately resistant, 22 cultivars including ``Long Impeator #58`` were susceptible to powdery mildew. Although there was no resistant cultivar against black rot and leaf blight, our results showed that several cultivars have moderate resistance. Thirteen cultivars including ``Oxheart Carrot Heirloom`` were having insect (Erythroplusia pyropia tolerance and ``SA 102`` and ``Scarlet Keeper Carrot Rare`` were susceptible. According to the investigation of bolting, 6 cultivars including ``Hongsim Ouchon Carrot`` were early bolting and 4 cultivars including ``Japanese Imperial Long Carrot`` were moderate bolting. Other cultivars were identified as late bolting. From above results, we confirmed that ``Oxheart Carrot Heirloom`` was suitable cultivar for organic cultivation among 32 genetic resources of carrot.

  19. Extensive sequence variation in rice blast resistance gene Pi54 makes it broad spectrum in nature

    Directory of Open Access Journals (Sweden)

    Shallu eThakur

    2015-05-01

    Full Text Available Rice blast resistant gene, Pi54 cloned from rice line, Tetep, is effective against diverse isolates of Magnaporthe oryzae. In this study, we prospected the allelic variants of the dominant blast resistance gene from a set of 92 rice lines to determine the nucleotide diversity, pattern of its molecular evolution, phylogenetic relationships and evolutionary dynamics, and to develop allele specific markers. High quality sequences were generated for homologs of Pi54 gene. Using comparative sequence analysis, InDels of variable sizes in all the alleles were observed. Profiling of the selected sites of SNP (Single Nucleotide Polymorphism and amino acids (N sites ≥ 10 exhibited constant frequency distribution of mutational and substitutional sites between the resistance and susceptible rice lines, respectively. A total of 50 new haplotypes based on the nucleotide polymorphism was also identified. A unique haplotype (H_3 was found to be linked to all the resistant alleles isolated from indica rice lines. Unique leucine zipper and tyrosine sulfation sites were identified in the predicted Pi54 proteins. Selection signals were observed in entire coding sequence of resistance alleles, as compared to LRR domains for susceptible alleles. This is a maiden report of extensive variability of Pi54 alleles in different landraces and cultivated varieties, possibly, attributing broad-spectrum resistance to Magnaporthe oryzae. The sequence variation in two consensus region: 163 bp and 144 bp were used for the development of allele specific DNA markers. Validated markers can be used for the selection and identification of better allele(s and their introgression in commercial rice cultivars employing marker assisted selection.

  20. Redox-active pyocyanin secreted by Pseudomonas aeruginosa 7NSK2 triggers systemic resistance to Magnaporthe grisea but enhances Rhizoctonia solani susceptibility in rice.

    Science.gov (United States)

    De Vleesschauwer, David; Cornelis, Pierre; Höfte, Monica

    2006-12-01

    Pseudomonas aeruginosa 7NSK2 induces resistance in dicots through a synergistic interaction of the phenazine pyocyanin and the salicylic acid-derivative pyochelin. Root inoculation of the monocot model rice with 7NSK2 partially protected leaves against blast disease (Magnaporthe grisea) but failed to consistently reduce sheath blight (Rhizoctonia solani). Only mutations interfering with pyocyanin production led to a significant decrease in induced systemic resistance (ISR) to M. grisea, and in trans complementation for pyocyanin production restored the ability to elicit ISR. Intriguingly, pyocyanin-deficient mutants, unlike the wild type, triggered ISR against R. solani. Hence, bacterial pyocyanin plays a differential role in 7NSK2-mediated ISR in rice. Application of purified pyocyanin to hydroponically grown rice seedlings increased H202 levels locally on the root surface as well as a biphasic H202 generation pattern in distal leaves. Co-application of pyocyanin and the antioxidant sodium ascorbate alleviated the opposite effects of pyocyanin on rice blast and sheath blight development, suggesting that the differential effectiveness of pyocyanin with respect to 7NSK2-triggered ISR is mediated by transiently elevated H202 levels in planta. The cumulative results suggest that reactive oxygen species act as a double-edged sword in the interaction of rice with the hemibiotroph M. grisea and the necrotroph R. solani.

  1. Switchgrass cultivar EG1101

    Energy Technology Data Exchange (ETDEWEB)

    Bouton, Joseph H; Wood, Donald T

    2012-11-27

    A switchgrass cultivar designated EG1101 is disclosed. Also disclosed are seeds of switchgrass cultivar EG1101, plants of switchgrass EG1101, plant parts of switchgrass cultivar EG1101 and methods for producing a switchgrass plant produced by crossing switchgrass cultivar EG1101 with itself or with another switchgrass variety. Methods are also described for producing a switchgrass plant containing in its genetic material one or more transgenes and to the transgenic switchgrass plants and plant parts produced by those methods. Switchgrass cultivars or breeding cultivars and plant parts derived from switchgrass variety EG1101, methods for producing other switchgrass cultivars, lines or plant parts derived from switchgrass cultivar EG1101 and the switchgrass plants, varieties, and their parts derived from use of those methods are described herein. Hybrid switchgrass seeds, plants and plant parts produced by crossing the cultivar EG1101 with another switchgrass cultivar are also described.

  2. Switchgrass cultivar EG1102

    Energy Technology Data Exchange (ETDEWEB)

    Bouton, Joseph H; Wood, Donald T

    2012-11-20

    A switchgrass cultivar designated EG1102 is disclosed. The invention relates to the seeds of switchgrass cultivar EG1102, to the plants of switchgrass EG1102, to plant parts of switchgrass cultivar EG1102 and to methods for producing a switchgrass plant produced by crossing switchgrass cultivar EG1102 with itself or with another switchgrass variety. The invention also relates to methods for producing a switchgrass plant containing in its genetic material one or more transgenes and to the transgenic switchgrass plants and plant parts produced by those methods. This invention also relates to switchgrass cultivars or breeding cultivars and plant parts derived from switchgrass variety EG1102, to methods for producing other switchgrass cultivars, lines or plant parts derived from switchgrass cultivar EG1102 and to the switchgrass plants, varieties, and their parts derived from use of those methods. The invention further relates to hybrid switchgrass seeds, plants and plant parts produced by crossing the cultivar EG1102 with another switchgrass cultivar.

  3. Quantitative proteomic analysis of cold-responsive proteins in rice.

    Science.gov (United States)

    Neilson, Karlie A; Mariani, Michael; Haynes, Paul A

    2011-05-01

    Rice is susceptible to cold stress and with a future of climatic instability we will be unable to produce enough rice to satisfy increasing demand. A thorough understanding of the molecular responses to thermal stress is imperative for engineering cultivars, which have greater resistance to low temperature stress. In this study we investigated the proteomic response of rice seedlings to 48, 72 and 96 h of cold stress at 12-14°C. The use of both label-free and iTRAQ approaches in the analysis of global protein expression enabled us to assess the complementarity of the two techniques for use in plant proteomics. The approaches yielded a similar biological response to cold stress despite a disparity in proteins identified. The label-free approach identified 236 cold-responsive proteins compared to 85 in iTRAQ results, with only 24 proteins in common. Functional analysis revealed differential expression of proteins involved in transport, photosynthesis, generation of precursor metabolites and energy; and, more specifically, histones and vitamin B biosynthetic proteins were observed to be affected by cold stress. Copyright © 2011 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  4. Pathogenecity of two strains of rice yellow mottle virus on aromatic ...

    African Journals Online (AJOL)

    ... against four aromatic rice cultivars M-69-9, Loya, Shingo ya mwali and Motisoro. The analysis of variance revealed significant differences only among cultivars for all plant parameters except for the disease severity, which showed significant statistical differences for cultivars, strains and their interactions. The strain S“New” ...

  5. A comparative study of competitiveness between different genotypes of weedy rice (Oryza sativa) and cultivated rice.

    Science.gov (United States)

    Dai, Lei; Dai, Weimin; Song, Xiaoling; Lu, Baorong; Qiang, Sheng

    2014-01-01

    Competition from weedy rice can cause serious yield losses to cultivated rice. However, key traits that facilitate competitiveness are still not well understood. To explore the mechanisms behind the strong growth and competitive ability, replacement series experiments were established with six genotypes of weedy rice from different regions and one cultivated rice cultivar. (1) Weedy rice from southern China had the greatest impact on growth and yield of cultivated rice throughout the entire growing season. Weedy rice from the northeast was very competitive during the early vegetative stage while the competitive effects of eastern weedy rice were more detrimental at later crop-growth stages. (2) As the proportion of weedy rice increased, plant height, tillers, above-ground biomass, and yield of cultivated rice significantly declined; the crop always being at disadvantage regardless of proportion. (3) Weedy biotypes with greater diversity as estimated by their Shannon indexes were more detrimental to the growth and yield of cultivated rice. Geographic origin (latitude) of weedy rice biotype, its mixture proportion under competition with the crop and its genetic diversity are determinant factors of the outcome of competition and the associated decline in the rice crop yield. © 2013 Society of Chemical Industry. © 2013 Society of Chemical Industry.

  6. A genome-wide association study of a global rice panel reveals resistance in Oryza sativa to root-knot nematodes.

    Science.gov (United States)

    Dimkpa, Stanley O N; Lahari, Zobaida; Shrestha, Roshi; Douglas, Alex; Gheysen, Godelieve; Price, Adam H

    2016-02-01

    The root-knot nematode Meloidogyne graminicola is one of the most serious nematode pests worldwide and represents a major constraint on rice production. While variation in the susceptibility of Asian rice (Oryza sativa) exists, so far no strong and reliable resistance has been reported. Quantitative trait loci for partial resistance have been reported but no underlying genes have been tagged or cloned. Here, 332 accessions of the Rice Diversity Panel 1 were assessed for gall formation, revealing large variation across all subpopulations of rice and higher susceptibility in temperate japonica accessions. Accessions Khao Pahk Maw and LD 24 appeared to be resistant, which was confirmed in large pot experiments where no galls were observed. Detailed observations on these two accessions revealed no nematodes inside the roots 2 days after inoculation and very few females after 17 days (5 in Khao Pahk Maw and 100 in the susceptible controls). These two cultivars appear ideal donors for breeding root-knot nematode resistance. A genome-wide association study revealed 11 quantitative trait loci, two of which are close to epistatic loci detected in the Bala x Azucena population. The discussion highlights a small number of candidate genes worth exploring further, in particular many genes with lectin domains and genes on chromosome 11 with homology to the Hordeum Mla locus. © The Author 2015. Published by Oxford University Press on behalf of the Society for Experimental Biology.

  7. Production of transgenic rice with agronomically useful genes: an assessment.

    Science.gov (United States)

    Giri, C C; Vijaya Laxmi, G

    2000-12-01

    Rice is the most important food crop in tropical and subtropical regions of the world. Yield enhancement to increase rice production is one of the essential strategies to meet the demand for food of the growing population. Both abiotic and biotic features limit adversely the productivity of rice growing areas. Conventional breeding has been an effective means for developing high yielding varieties, however; it is associated with its own limitations. It is envisaged that recent trends in biotechnology can contribute to the agronomic improvement of rice in terms of yield and nutritional quality as a supplement to traditional breeding methods. Genetic transformation of rice has demonstrated numerous important opportunities resulting in the genetic improvement of existing elite rice varieties and production of new plant types. Significant advances have been made in the genetic engineering of rice since the first transgenic rice plant production in the late 1980s. Several gene transfer protocols have been employed successfully for the introduction of foreign genes to rice. In more than 60 rice cultivars belonging to indica, japonica, javanica, and elite African cultivars, the protocol has been standardized for transgenic rice production. Selection and use of appropriate promoters, selectable markers, and reporter genes has been helpful for development of efficient protocols for transgenic rice in a number of rice cultivars. The present review is an attempt to assess the current state of development in transgenic rice for the transfer of agronomically useful genes, emphasizing the application and future prospects of transgenic rice production for the genetic improvement of this food crop.

  8. Cadmium accumulation in and tolerance of rice (Oryza sativa L.) varieties with different rates of radial oxygen loss

    Energy Technology Data Exchange (ETDEWEB)

    Wang, M.Y. [School of Life Sciences, Sun Yat-sen University, Guangzhou 510006 (China); Chen, A.K. [Department of Biology, Guangdong University of Education, Guangzhou 510303 (China); Wong, M.H. [Croucher Institute for Environmental Sciences, and Department of Biology, Hong Kong Baptist University, Hong Kong SAR (China); Qiu, R.L., E-mail: eesqrl@mail.sysu.edu.cn [School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510275 (China); Cheng, H. [School of Life Sciences, Sun Yat-sen University, Guangzhou 510006 (China); Ye, Z.H., E-mail: lssyzhh@mail.sysu.edu.cn [School of Life Sciences, Sun Yat-sen University, Guangzhou 510006 (China)

    2011-06-15

    Cadmium (Cd) uptake and tolerance were investigated among 20 rice cultivars based on a field experiment (1.2 mg Cd kg{sup -1} in soil) and a soil pot trial (control, 100 mg Cd kg{sup -1}), and rates of radial oxygen loss (ROL) were measured under a deoxygenated solution. Significant differences were found among the cultivars in: (1) brown rice Cd concentrations (0.11-0.29 mg kg{sup -1}) in a field soil, (2) grain Cd tolerance (34-113%) and concentrations (2.1-6.5 mg kg{sup -1}) in a pot trial, and (3) rates of ROL (15-31 mmol O{sub 2} kg{sup -1} root d.w. h{sup -1}). Target hazard quotients were calculated for the field experiment to assess potential Cd risk. Significant negative relationships were found between rates of ROL and concentrations of Cd in brown rice or straw under field and greenhouse conditions, indicating that rice cultivars with higher rates of ROL had higher capacities for limiting the transfer of Cd to rice and straw. - Highlights: > There are significant differences in brown rice Cd concentrations and rates of ROL among the rice cultivars. > The rates of ROL are significantly correlated with concentrations of Cd in brown rice. > Rice cultivars with higher rates of ROL have higher capacities for limiting the transfer of Cd to rice and straw. - Rice cultivars with high rates of ROL tended to accumulate low Cd in grains.

  9. Evolutionary Insights Based on SNP Haplotypes of Red Pericarp, Grain Size and Starch Synthase Genes in Wild and Cultivated Rice

    Directory of Open Access Journals (Sweden)

    Nisha Singh

    2017-06-01

    Full Text Available The origin and domestication of rice has been a subject of considerable debate in the post-genomic era. Rice varieties have been categorized based on isozyme and DNA markers into two broad cultivar groups, Indica and Japonica. Among other well-known cultivar groups Aus varieties are closer to Indica and Aromatic varieties including Basmati are closer to Japonica, while deep-water rice varieties share kinship to both Indica and Japonica cultivar groups. Here, we analyzed haplotype networks and phylogenetic relationships in a diverse set of genotypes including Indian Oryza nivara/Oryza rufipogon wild rice accessions and representative varieties of four rice cultivar groups based on pericarp color (Rc, grain size (GS3 and eight different starch synthase genes (GBSSI, SSSI, SSIIa, SSIIb, SSIIIa, SSIIIb, SSIVa, and SSIVb. Aus cultivars appear to have the most ancient origin as they shared the maximum number of haplotypes with the wild rice populations, while Indica, Japonica and Aromatic cultivar groups showed varying phylogenetic origins of these genes. Starch synthase genes showed higher variability in cultivated rice than wild rice populations, suggesting diversified selection during and after domestication. O. nivara/O. rufipogon wild rice accessions belonging to different sub-populations shared common haplotypes for all the 10 genes analyzed. Our results support polyphyletic origin of cultivated rice with a complex pattern of migration of domestication alleles from wild to different rice cultivar groups. The findings provide novel insights into evolutionary and domestication history of rice and will help utilization of wild rice germplasm for genetic improvement of rice cultivars.

  10. Evolutionary Insights Based on SNP Haplotypes of Red Pericarp, Grain Size and Starch Synthase Genes in Wild and Cultivated Rice

    Science.gov (United States)

    Singh, Nisha; Singh, Balwant; Rai, Vandna; Sidhu, Sukhjeet; Singh, Ashok K.; Singh, Nagendra K.

    2017-01-01

    The origin and domestication of rice has been a subject of considerable debate in the post-genomic era. Rice varieties have been categorized based on isozyme and DNA markers into two broad cultivar groups, Indica and Japonica. Among other well-known cultivar groups Aus varieties are closer to Indica and Aromatic varieties including Basmati are closer to Japonica, while deep-water rice varieties share kinship to both Indica and Japonica cultivar groups. Here, we analyzed haplotype networks and phylogenetic relationships in a diverse set of genotypes including Indian Oryza nivara/Oryza rufipogon wild rice accessions and representative varieties of four rice cultivar groups based on pericarp color (Rc), grain size (GS3) and eight different starch synthase genes (GBSSI, SSSI, SSIIa, SSIIb, SSIIIa, SSIIIb, SSIVa, and SSIVb). Aus cultivars appear to have the most ancient origin as they shared the maximum number of haplotypes with the wild rice populations, while Indica, Japonica and Aromatic cultivar groups showed varying phylogenetic origins of these genes. Starch synthase genes showed higher variability in cultivated rice than wild rice populations, suggesting diversified selection during and after domestication. O. nivara/O. rufipogon wild rice accessions belonging to different sub-populations shared common haplotypes for all the 10 genes analyzed. Our results support polyphyletic origin of cultivated rice with a complex pattern of migration of domestication alleles from wild to different rice cultivar groups. The findings provide novel insights into evolutionary and domestication history of rice and will help utilization of wild rice germplasm for genetic improvement of rice cultivars. PMID:28649256

  11. Development of rice materials for studying the genomics of disease resistance

    Science.gov (United States)

    The availability of the rice genome sequence allows rapid characterization of resistance genes using standard methods of reverse and forward genetics. To facilitate genomic characterization of rice resistance genes a large mutant population based on a single rice genotype, Oryzae sativa cultivar 'Ka...

  12. Phenological characters and genetic divergence in aromatic rices ...

    African Journals Online (AJOL)

    Phenological properties of rice cultivars determine their yield potential, local agronomic suitability and ability to escape from drought and natural calamities. This study was conducted to assess the genetic diversity of aromatic rice genotypes on the basis of phenological characters. 40 genotypes composed of 32 local ...

  13. UV-irradiation enhances rice allelopathic potential in rhizosphere soil

    DEFF Research Database (Denmark)

    Mahmood, Khalid; Khan, Muhammad Bismillah; Song, Yuan Yuan

    2013-01-01

    Ultraviolet-B radiation is rising continuously due to stratospheric ozone depletion over temperate latitudes. This study investigated effects of UV exposure on rice allelopathic potentials. For this purpose, two rice (Oryza sativa L.) cultivars BR-41 (high allelopathic = able to inhibit neighbori...

  14. Relative susceptibility of banana cultivars to Xanthomonas ...

    African Journals Online (AJOL)

    STORAGESEVER

    2009-10-19

    Oct 19, 2009 ... Mwangi M, Valentine G, Aritua V, Ivey ML, Miller SA, Smith JJ. (2009). Confirmation of Xanthomonas vasicola causative organism of. Banana Xanthomonas Wilt in Tanzania, Burundi and Kenya. Plant. Pathol. 57: 170-177. Denman S, Kirk SA, Brasier CM, Webber JF (2005). In vitro leaf inoculation studies as ...

  15. Identification of molecular markers linked to rice bacterial blight resistance genes from Oryza meyeriana

    Directory of Open Access Journals (Sweden)

    Jing WANG,Chen CHENG,Yanru ZHOU,Yong YANG,Qiong MEI,Junmin LI,Ye CHENG,Chengqi YAN,Jianping CHEN

    2015-09-01

    Full Text Available Y73 is a progeny of asymmetric somatic hybridization between Oryza sativa cv. Dalixiang and the wild rice species Oryza meyeriana. Inoculation with a range of strains of Xanthomonas oryzae pv. oryzae showed that Y73 had inherited a high level of resistance to rice bacterial blight (BB from its wild parent. An F2 population of 7125 individuals was constructed from the cross between Y73 and a BB-susceptible cultivar IR24. After testing 615 SSR and STS markers covering the 12 rice chromosomes, 186 markers were selected that showed polymorphism between Y73 and IR24. Molecular markers linked to the BB resistance genes in Y73 were scanned using the F2 population and the polymorphic markers. The SSR marker RM128 on chromosome 1, the STS marker R03D159 on chromosome 3 and the STS marker R05D104 on chromosome 5 were found to be linked to the rice BB resistance genes in Y73.

  16. Activation of ethylene signaling pathways enhances disease resistance by regulating ROS and phytoalexin production in rice.

    Science.gov (United States)

    Yang, Chao; Li, Wen; Cao, Jidong; Meng, Fanwei; Yu, Yongqi; Huang, Junkai; Jiang, Lan; Liu, Muxing; Zhang, Zhengguang; Chen, Xuewei; Miyamoto, Koji; Yamane, Hisakazu; Zhang, Jinsong; Chen, Shouyi; Liu, Jun

    2017-01-01

    Ethylene plays diverse roles in plant growth, development and stress responses. However, the roles of ethylene signaling in immune responses remain largely unknown. In this study, we showed that the blast fungus Magnaporthe oryzae infection activated ethylene biosynthesis in rice. Resistant rice cultivars accumulated higher levels of ethylene than susceptible ones. Ethylene signaling components OsEIN2 and the downstream transcription factor OsEIL1 positively regulated disease resistance. Mutation of OsEIN2 led to enhanced disease susceptibility. Whole-genome transcription analysis revealed that responsive genes of ethylene, jasmonates (JAs) and reactive oxygen species (ROS) signaling as well as phytoalexin biosynthesis genes were remarkably induced. Transcription of OsrbohA/B, which encode NADPH oxidases, and OsOPRs, the JA biosynthesis genes, were induced by M. oryzae infection. Furthermore, we demonstrated that OsEIL1 binds to the promoters of OsrbohA/OsrbohB and OsOPR4 to activate their expression. These data suggest that OsEIN2-mediated OsrbohA/OsrbohB and OsOPR transcription may play essential roles in ROS generation, JA biosynthesis and the subsequent phytoalexin accumulation. Therefore, the involvement of ethylene signaling in disease resistance is probably by activation of ROS and phytoalexin production in rice during M. oryzae infection. © 2016 The Authors The Plant Journal © 2016 John Wiley & Sons Ltd.

  17. Comparing rice germplasm groups for growth, grain yield and weed-suppressive ability under aerobic soil conditions

    NARCIS (Netherlands)

    Zhao, D.L.; Atlin, G.N.; Bastiaans, L.; Spiertz, J.H.J.

    2006-01-01

    Germplasm and cultivars need to be selected as parents for breeding weed-competitive aerobic rice in the tropics. Forty rice (Oryza sativa) cultivars belonging to the aus, indica and tropical japonica germplasm groups, or derived from crosses among them, were evaluated in adjacent weed-free and

  18. Rice brans, rice bran oils, and rice hulls: composition, food and industrial uses, and bioactivities in humans, animals, and cells.

    Science.gov (United States)

    Friedman, Mendel

    2013-11-13

    Rice plants produce bioactive rice brans and hulls that have been reported to have numerous health-promoting effects in cells, animals, and humans. The main objective of this review is to consolidate and integrate the widely scattered information on the composition and the antioxidative, anti-inflammatory, and immunostimulating effects of rice brans from different rice cultivars, rice bran oils derived from rice brans, rice hulls, liquid rice hull smoke derived from rice hulls, and some of their bioactive compounds. As part of this effort, this paper also presents brief summaries on the preparation of health-promoting foods including bread, corn flakes, frankfurters, ice cream, noodles, pasta, tortillas, and zero-trans-fat shortening as well as industrial products such bioethanol and biodiesel fuels. Also covered are antibiotic, antiallergic, anticarcinogenic, antidiabetic, cardiovascular, allelochemical, and other beneficial effects and the mechanisms of the bioactivities. The results show that food-compatible and safe formulations with desirable nutritional and biological properties can be used to develop new multifunctional foods as well as bioethanol and biodiesel fuel. The overlapping aspects are expected to contribute to a better understanding of the potential impact of the described health-promoting potential of the rice-derived brans, oils, and hulls in food and medicine. Such an understanding will enhance nutrition and health and benefit the agricultural and industrial economies.

  19. Xanthomonas oryzae pv. oryzae requires H-NS-family protein XrvC to regulate virulence during rice infection.

    Science.gov (United States)

    Liu, Yongting; Long, Juying; Shen, Dan; Song, Congfeng

    2016-05-01

    Histone-like nucleoid-structuring (H-NS) proteins, which are conserved in Gram-negative bacteria, bind DNA and act as the global transcriptional repressors. In this study, we identified and characterized the xrvC gene encoding a H-NS protein in Xathomonas oryzae pv. oryzae (Xoo) Philippines strain PXO99(A) Compared with the wild type, the xrvC-deficient mutant of PXO99(A) (named PXO99ΔxrvC) showed a reduced growth rate in both nutrient-rich and nutrient-limited media. Interestingly, PXO99ΔxrvC exhibited significantly reduced virulence on rice cultivar IRBB214, but its virulence on 31 other rice cultivars was not affected. Transcriptional analysis revealed that the expression of hrpG, hrpX and hpa1 and of 15 out of 18 tested non-TAL (transcription activator-like) effector genes was decreased significantly in the xrvC mutant compared with that in the wild type. In addition, loss of xrvC also impaired the induction of the rice susceptibility gene Os8N3 in IRBB214 by PXO99(A) Our results suggest that the xrvC gene is involved in bacterial growth, and it plays a vital role in virulence by positively regulating the expression of hrp genes and non-TAL effector genes in PXO99(A) and the susceptibility gene Os8N3 in rice. © FEMS 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

  20. The Effects of Cadmium Exposure on Cadmium Fractionation and Enzyme Activities in the Rhizosphere of Two Radish Cultivars (Raphanus sativus L.).

    Science.gov (United States)

    Xin, Juan; Zhao, Xiaohu; Tan, Qiling; Sun, Xuecheng; Wen, Xin; Qin, Shiyu; Hu, Chengxiao

    2017-02-01

    The effects of increasing Cd additions on plant growth and Cd fractionation and enzyme activities in rhizosphere soil of two radish cultivars were investigated. The results showed that Cd concentrations in shoot and root of cultivar 4 were both higher than for cultivar 19 under different Cd levels. Compared with cultivar 19, the total, shoot and root biomasses of cultivar 4 were significantly reduced with increasing Cd levels. A decrease in soil pH was observed for cultivar 4. The exchangeable Cd concentration of soil from cultivar 4 was significantly higher than for soil from cultivar 19, while the carbonate-bound Cd concentration of soil from cultivar 4 was significantly lower than for cultivar 19. Enzyme activities, especially acid phosphatase activity, were more susceptible to Cd in soil from cultivar 4. These results indicated that cultivar 19 exhibits a stronger ability to adapt to Cd stress than cultivar 4.

  1. Effect of Salt Stress on Germination and Growth Parameters of Rice (Oryza sativa L.

    Directory of Open Access Journals (Sweden)

    Akinbode Foluso OLOGUNDUDU

    2014-06-01

    Full Text Available The response of eight varieties of Oryza sativa L. (‘NERICA 1’, ‘NERICA 5’, ‘NERICA 12’, ‘NERICA 19’, ‘IR 29’, ‘IR 20’, ‘IWA 11’, and ‘POKKALI’, a salt tolerant check against four salinity levels (0, 5, 10, and 15 ds m-1 were studied at germination and early growth stages. Data were analyzed using Statistical Analytical System (SAS and means were separated by Duncan Multiple Range Test (DMRT for Final Germination Percentage (FGP, Speed of Germination (SG, Germination Energy Percentage (GE%, shoot and root length and root and shoot dry weight. Based on dry matter yield reduction, rice varieties were classified as tolerant (T, moderately tolerant (MT, moderately susceptible (MS or susceptible (S. Germination was not recorded at 20 ds m-1 salt concentration in all cultivars. Salinity decreased FGP, SG, GE% and led to reduction in shoot and root length and dry weight in all varieties and the magnitude of reduction increased with increasing salinity stress. Rice varieties ‘NERICA 12’, ‘IR 20’, ‘IWA 11’ and ‘NERICA 19’ showed greater salt tolerance during germination (germinated at 10 ds m-1 salinity. However, ‘NERICA 1’, ‘IR 29’, and ‘IR 20’ performed better based on dry matter yield reduction. The result suggested that ‘NERICA 1’, ‘IR 29’, and ‘IR 20’ might be used for further study of salinity effect on growth processes and physiological consequences at advanced stage of growth. The physiological responses of rice plants to salinity at various developmental stages are therefore critical for identifying salinity tolerance in the cultivars.

  2. Role of ferritin in the rice tolerance to iron overload Papel da ferritina na tolerância de arroz ao excesso de ferro

    Directory of Open Access Journals (Sweden)

    Vivian Chagas da Silveira

    2009-08-01

    Full Text Available Plants ordinarily face iron (Fe deficiency, since this mineral is poorly available in soils under aerobic conditions. Nonetheless, wetland and irrigated rice plants can be exposed to excess, highly toxic Fe. Ferritin is a ubiquitous Fe-storage protein, important for iron homeostasis. Increased ferritin accumulation resulting from higher Fe availability was shown in some plant species. However, the role of ferritin in tolerance mechanisms to Fe overload in rice is yet to be established. In this study, recombinant rice ferritin was expressed in Escherichia coli, producing an anti-rice ferritin polyclonal antibody which was used to evaluate ferritin accumulation in two rice (Oryza sativa L. cultivars, either susceptible (BR-IRGA 409 or tolerant (EPAGRI 108 to Fe toxicity. Increased ferritin mRNA and protein levels resulting from excess Fe treatment were detected in both cultivars, with higher ferritin protein accumulation in EPAGRI 108 plants, which also reached lower shoot Fe concentrations when submitted to iron overload. The tolerance mechanism to excess Fe in EPAGRI 108 seems to include both restricted Fe translocation and increased ferritin accumulation. This is the first work that shows higher accumulation of the ferritin protein in an iron-excess tolerant Oryza sativa cultivar, providing evidence of a possible role of this protein in iron tolerance mechanisms.Deficiência de ferro (Fe ocorre freqüentemente em plantas, uma vez que este mineral é pouco disponível em condições aeróbicas. Plantas de arroz cultivadas sob alagamento, no entanto, estão sujeitas ao excesso de Fe, que pode ser extremamente tóxico. Alguns cultivares de arroz são resistentes a altas concentrações de ferro, mas os mecanismos fisiológicos responsáveis por essa resistência são pouco conhecidos. A ferritina é uma proteína de ampla distribuição e capaz de armazenar ferro, sendo considerada importante para a homeostase deste metal. Acúmulo de ferritina em

  3. Reproduction of Meloidogyne chitwoodi on Popcorn Cultivars

    Science.gov (United States)

    Cardwell, D. M.; Ingham, R. E.

    1997-01-01

    Popcorn cultivars were evaluated in field and greenhouse tests for resistance to the Columbia root-knot nematode, Meloidogyne chitwoodi, as potential resistant crops in potato rotations. A nematode reproductive factor (Rf) was calculated for each cultivar. Reproductive factor values also were compared on a relative basis as percentages of the Rf on a susceptible field corn standard, Pioneer 3578. Popcorn cultivars W206 and Robust 33-77 consistently supported low population densities of M. chitwoodi in repeated tests. However, WOC 9508 had the greatest resistance in any of the field tests, with an Rf value of 0.04. Cultivars with a mean field and greenhouse Rf value less than 50% of the value for Pioneer 3578 were WOC 9508 (8%), WOC 9554 (13%), W206 (15%), WOX 9512 (23%), Robust 33-77 (30%), Robust 20-70 (38%), WOC 9510 (41%), and WOC 9504 (42%). If these cultivars were used in rotation, M. chitwoodi population densities at the end of the popcorn season would be between 58% and 92% less than if Pioneer 3578 were grown. In greenhouse tests, WOX 9511, WOX 9528, WOC 9556, and WOX 9531 also had low Rf values (7-46% that of Pioneer 3578), but field testing of these cultivars is needed. PMID:19274265

  4. Reproductive stage physiological and transcriptional responses to salinity stress in reciprocal populations derived from tolerant (Horkuch) and susceptible (IR29) rice

    Science.gov (United States)

    Razzaque, Samsad; Haque, Taslima; Elias, Sabrina M.; Rahman, Md. Sazzadur; Biswas, Sudip; Schwartz, Scott; Ismail, Abdelbagi M.; Walia, Harkamal; Juenger, Thomas E.; Seraj, Zeba I.

    2017-04-01

    Global increase in salinity levels has made it imperative to identify novel sources of genetic variation for tolerance traits, especially in rice. The rice landrace Horkuch, endemic to the saline coastal area of Bangladesh, was used in this study as the source of tolerance in reciprocal crosses with the sensitive but high-yielding IR29 variety for discovering transcriptional variation associated with salt tolerance in the resulting populations. The cytoplasmic effect of the Horkuch background in leaves under stress showed functional enrichment for signal transduction, DNA-dependent regulation and transport activities. In roots the enrichment was for cell wall organization and macromolecule biosynthesis. In contrast, the cytoplasmic effect of IR29 showed upregulation of apoptosis and downregulation of phosphorylation across tissues relative to Horkuch. Differential gene expression in leaves of the sensitive population showed downregulation of GO processes like photosynthesis, ATP biosynthesis and ion transport. Roots of the tolerant plants conversely showed upregulation of GO terms like G-protein coupled receptor pathway, membrane potential and cation transport. Furthermore, genes involved in regulating membrane potentials were constitutively expressed only in the roots of tolerant individuals. Overall our work has developed genetic resources and elucidated the likely mechanisms associated with the tolerance response of the Horkuch genotype.

  5. mediated transformation in two indica rice

    African Journals Online (AJOL)

    Agrobacterium tumefaciens strain EHA 105 carrying binary vector pCAMBIA 1301 was used for transformation in two economically important highly recalcitrant indica rice cultivars HKR-46 and HKR-126. High concentrations of acetosyringone in the agrobacterium culture and co-cultivation medium proved to be ...

  6. Quantitative and qualitative damage caused by Oebalus poecilus (Hemiptera, Pentatomidae to upland rice cultivated in new agricultural frontier of the Amazon rainforest (Brazil

    Directory of Open Access Journals (Sweden)

    Diones Krinski

    Full Text Available ABSTRACT Oebalus poecilus (Dallas 1851 is one of the stink bug species of great economic importance for rice producers in Brazil of irrigated, flood and upland cropping systems. These pentatomids are known as stink bugs of panicles, because both nymphs and adults feed mainly on panicles. Stink bug attacks result in pecky (spots seeds, lower mass, germinative reduction and deformed grains. Bearing these factors in mind, the aim of this study was to evaluate the quantitative and qualitative losses in commercial cultivars of upland rice (Cambará variety, submitted to different population levels of stink bugs of panicles, O. poecilus, at different reproductive growth stages. The results show that in upland rice (Cambará variety, the rice grains are susceptible to quantitative (number and weight and qualitative (pecky, atrophy, chalky and broken grains damage during all panicle development. However, when the insects feed during anthesis/caryopsis and milky stage cause significantly greater percentage of empty grains (up to 83% than when they feed of grains during later phases of panicle development. This characteristic was also observed for the reduction in grain weight. This information may benefit producers and other researchers, allowing them to focus on the monitoring efforts of O. poecilus in most susceptible phases of the attack of this insect. This will enable decision-making about what control measures should be taken, and when, in order to control stink bugs of panicles.

  7. Effects of Wheat Cultivar Mixtures on Epidemic Progression of Septoria Tritici Blotch and Pathogenicity of Mycosphaerella graminicola

    National Research Council Canada - National Science Library

    Cowger, Christina; Mundt, Christopher C

    2002-01-01

    .... We used four mixtures of moderately resistant and susceptible winter wheat cultivars naturally inoculated with Mycosphaerella graminicola to investigate impacts on disease progression in the field...

  8. Effect of acetic acid on rice seeds coated with rice husk ash

    Directory of Open Access Journals (Sweden)

    Lizandro Ciciliano Tavares

    2013-06-01

    Full Text Available Flooded rice cultivation promotes anaerobic conditions, favoring the formation of short chain organic acids such as acetic acid, which may be toxic to the crop. The objective of this study was to evaluate the effect of acetic acid on rice seeds coated with rice husk ash. The experiment was arranged in a 2 x 5 x 5 factorial randomized design, with two cultivars (IRGA 424 and BRS Querência, five doses of coating material (0, 2, 3,4 e 5 g kg-1 seed and five concentrations of acetic acid (0, 3, 6, 9 and 12 mM, with 4 replications, totaling 50 treatments. The variables first count of germination, germination, shoot and root length, dry weight of shoots and roots were recorded. The results showed that coating rice seeds with rice husk ash up to 5 g kg-1 seed does not influence the performance of rice seeds of cultivars IRGA 424 and BRS Querência when exposed to concentrations of 12 mM acetic acid. The presence of acetic acid in the substrates used for seed germination reduced the vigor and viability of seeds of cultivars IRGA 424 and BRS Querência, as well as seedling development, affecting mainly the roots of BRS Querência.

  9. Danish apple cultivars

    DEFF Research Database (Denmark)

    Larsen, Bjarne; Pedersen, Carsten; Ørgaard, Marian

    2017-01-01

    Abstract We made a genetic analysis of about 500 apple cultivars, which either originate from Denmark or have been of greater importance in Denmark. To study the diversity and parentage among the cultivars, 15 SSR markers were used. A new PCR-based protocol for identification of S-alleles was dev......Abstract We made a genetic analysis of about 500 apple cultivars, which either originate from Denmark or have been of greater importance in Denmark. To study the diversity and parentage among the cultivars, 15 SSR markers were used. A new PCR-based protocol for identification of S...

  10. Allelopathic effects of jungle rice (Echinochloa colona (L.Link extract on seed germination and seedling growth of rice

    Directory of Open Access Journals (Sweden)

    Pimjai Sitthinoi

    2017-04-01

    Full Text Available The allelopathic effects of jungle rice were investigated on the seed germination and seedling growth of the two rice cultivars, Khao Dawk Mali 105 and RD41. Jungle rice extract with varying concentrations (0 mg/mL, 1 mg/mL, 5 mg/mL and 10 mg/mL was prepared using three solvents (hexane, dichloromethane and methanol from shoots and roots separately. The jungle rice extracts from the shoot part showed a higher inhibitory effect on the root length and seedling dry weight of rice compared to the extracts from the root part. Different extraction solvents caused differences in the inhibitory effect on the germination and seedling growth of rice and had an interaction with the extract concentration in all parameters measured. Methanol extraction solvent severely inhibited the seed germination of both cultivars regardless of the extract concentrations, whereas the jungle rice extracts using dichloromethane and hexane showed moderate inhibitory effects depending on the concentrations of 1–10 mg/mL, respectively. It can be concluded that jungle rice extracts contain allelopathic compounds and can inhibit the seed germination and seedling growth of rice. Methanol should be used as an extraction solvent if the inhibitory effect of the jungle rice extract is required.

  11. Uptake, translocation and transformation of antimony in rice (Oryza sativa L.) seedlings.

    Science.gov (United States)

    Cai, Fei; Ren, Jinghua; Tao, Shu; Wang, Xilong

    2016-02-01

    Antimony (Sb), as a toxic metalloid, has been gaining increasing research concerns due mainly to its severe pollution in many places. Rice has been identified to be the dominant intake route of Sb by residents close to the Sb mining areas. A hydroponic experiment was conducted to investigate the difference in uptake, translocation and transformation of Sb in rice seedlings of four cultivars exposed to 0.2 or 1.0 mg/L of Sb(V). The results showed that mass concentration of iron plaque (mg/kg FW) formed at the root surfaces of cultivar N was the highest among all tested cultivars at both low and high exposure levels of Sb(V). The accumulated Sb concentration in iron plaque significantly increased with an increase in mass concentration of iron plaque formed at the rice root. The total amount of iron plaque (mg/pot) at rice root generally increased with increasing exposed Sb(V) concentration, which was closely associated with the increasing lipid peroxidation in roots. Concentration percentage of Sb in rice root significantly reduced as the corresponding value in the iron plaque increased, suggesting that iron plaque formation strongly suppressed uptake of Sb by rice root. Sb concentration in rice tissues followed an order: root > stem, leaf. The japonica rice (cultivars N and Z) exhibited a stronger translocation tendency of Sb from root to stem than indica hybrid rice (cultivars F and G). Translocation of Sb from root of cultivar F to its stem and leaf was sharply enhanced with increasing Sb exposure concentration. Sb(V) could be reduced to Sb(III) in rice tissues, especially in stems (10-26% of the total Sb). For the sake of food safety, the difference in uptake, translocation and transformation of Sb in rice species planted in Sb-contaminated soils should be taken into consideration. Copyright © 2015 Elsevier Ltd. All rights reserved.

  12. Transmission of Rice Black-Streaked Dwarf Virus from Frozen Infected Leaves to Healthy Rice Plants by Small Brown Planthopper (Laodelphax striatellus)

    OpenAIRE

    Zhou, Tong; Wu, Li-juan; Wang, Ying; Cheng, Zhao-Bang; Ji, Ying-Hua; Yong-jian FAN; Zhou, Yi-Jun

    2011-01-01

    In order to preserve virus for identifying the resistance of rice varieties against rice black-streaked dwarf disease, a simple and reliable method was developed, through which virus-free small brown planthopper (SBPH) acquired rice black-streaked dwarf virus (RBSDV) from frozen infected leaves and the virus was transmitted to healthy rice plants. The experimental results showed that SBPH could obtain RBSDV from frozen infected rice leaves and the virus could be transmitted to a susceptible r...

  13. Genetic dissection of rice blast resistance by QTL mapping approach using an F3 population.

    Science.gov (United States)

    Ashkani, S; Rafii, M Y; Rahim, H A; Latif, M A

    2013-03-01

    Rice blast is one of the major fungal diseases that badly reduce rice production in Asia including Malaysia. There is not much information on identification of QTLs as well as linked markers and their association with blast resistance within local rice cultivars. In order to understanding of the genetic control of blast in the F3 families from indica rice cross Pongsu seribu2/Mahsuri, an analysis of quantitative trait loci against one of the highly virulent Malaysian rice blast isolate Magnaporthe oryzae, P5.0 was carried out. Result indicated that partial resistance to this pathotype observed in the present study was controlled by multiple loci or different QTLs. In QTL analysis in F3 progeny fifteen QTLs on chromosomes 1, 2, 3, 5, 6, 11 and 12 for resistance to blast nursery tests was identified. Three of detected QTLs (qRBr-6.1, qRBr-11.4, and qRBr-12.1) had significant threshold (LOD >3) and approved by both IM and CIM methods. Twelve suggestive QTLs, qRBr-1.2, qRBr-2.1, qRBr-4.1, qRBr-5.1, qRBr-6.2, qRBr-6.3, qRBr-8.1, qRBr-10.1, qRBr-10.2, qRBr-11.1, qRBr-11.2 and qRBr-11.3) with Logarithmic of Odds (LOD) F3 lines resistance segregated in the expected ratio of 15: 1 for resistant to susceptible. The average score for blast resistance measured in the green house was 3.15, 1.98 and 29.95 % for three traits, BLD, BLT and % DLA, respectively.

  14. Do Phosphorus Nutrition and Iron Plaque Alter Arsenate (As) Uptake by Rice Seedlings in Hydroponic Culture?

    National Research Council Canada - National Science Library

    W.-J. Liu; Y.-G. Zhu; F. A. Smith; S. E. Smith

    2004-01-01

    • A hydroponic experiment was conducted to investigate the effect of phosphorus (P) nutrition and iron plaque on root surfaces on arsenate uptake by, and translocation within, the seedlings of three cultivars of rice...

  15. Effects of nighttime air temperature during kernel development on rice physicochemical and functional properties

    Science.gov (United States)

    Elevated nighttime air temperatures (NTATs) occurring during critical grain-filling stages affected rice physicochemical properties, which impacted functional quality. Six cultivars were grown at multiple field locations from northern to southern Arkansas during 2007 to 2010. Nighttime temperature...

  16. Rice methylmercury exposure and mitigation: a comprehensive review.

    Science.gov (United States)

    Rothenberg, Sarah E; Windham-Myers, Lisamarie; Creswell, Joel E

    2014-08-01

    Rice cultivation practices from field preparation to post-harvest transform rice paddies into hot spots for microbial mercury methylation, converting less-toxic inorganic mercury to more-toxic methylmercury, which is likely translocated to rice grain. This review includes 51 studies reporting rice total mercury and/or methylmercury concentrations, based on rice (Orzya sativa) cultivated or purchased in 15 countries. Not surprisingly, both rice total mercury and methylmercury levels were significantly higher in polluted sites compared to non-polluted sites (Wilcoxon rank sum, p<0.001). However, rice percent methylmercury (of total mercury) did not differ statistically between polluted and non-polluted sites (Wilcoxon rank sum, p=0.35), suggesting comparable mercury methylation rates in paddy soil across these sites and/or similar accumulation of mercury species for these rice cultivars. Studies characterizing the effects of rice cultivation under more aerobic conditions were reviewed to determine the mitigation potential of this practice. Rice management practices utilizing alternating wetting and drying (instead of continuous flooding) caused soil methylmercury levels to spike, resulting in a strong methylmercury pulse after fields were dried and reflooded; however, it is uncertain whether this led to increased translocation of methylmercury from paddy soil to rice grain. Due to the potential health risks, it is advisable to investigate this issue further, and to develop separate water management strategies for mercury polluted and non-polluted sites, in order to minimize methylmercury exposure through rice ingestion. Copyright © 2014 Elsevier Inc. All rights reserved.

  17. Uso da sensitividade à radiação gama na discriminação de variedades de arroz-de-sequeiro dos grupos Índica e Japônica Use of gamma-rays sensitivity for discrimination of upland rice cultivars of groups Indica and Japonica

    Directory of Open Access Journals (Sweden)

    Luís Roberto Franco Rodrigues

    2003-01-01

    Full Text Available Avaliaram-se 65 variedades de arroz-de-sequeiro (Oryza sativa L. quanto à sensitividade à radiação gama. As sementes foram submetidas a sete doses de radiação gama e semeadas em caixas de madeira no delineamento em blocos completos ao acaso com três repetições. O experimento foi desenvolvido em casa de vegetação em 1992. A medida da sensitividade foi efetuada por meio dos efeitos fisiológicos produzidos na geração M1; determinaram-se as percentagens de emergência, sobrevivência e a altura das plântulas. Os resultados mostraram que a sensitividade à radiação gama foi eficiente para discriminar os grupos Índica e Japônica nas dosagens de 300 e 360 Gy.Sixty-five upland rice cultivars (Oryza sativa L. were evaluated in relation to gamma-ray sensitivity. Seeds were subjected to seven doses of gamma-radiation and sown in wooden boxes in randomised complete block design with three replications. The experiment was conducted in greenhouse during the year of 1992. Physiological effects caused by radiation in the M1 generation, were evaluated. The results showed that the sensitivity to the radiation at doses 300 and 360 Gy was useful for distinguishing Indica and Japonica groups.

  18. Effect of Salt Stress on Germination and Growth Parameters of Rice (Oryza sativa L.

    Directory of Open Access Journals (Sweden)

    Akinbode Foluso OLOGUNDUDU

    2014-06-01

    Full Text Available The response of eight varieties of Oryza sativa L. (‘NERICA 1’, ‘NERICA 5’, ‘NERICA 12’, ‘NERICA 19’, ‘IR 29’, ‘IR 20’, ‘IWA 11’, and ‘POKKALI’, a salt tolerant check against four salinity levels (0, 5, 10, and 15 ds m-1 were studied at germination and early growth stages. Data were analyzed using Statistical Analytical System (SAS and means were separated by Duncan Multiple Range Test (DMRT for Final Germination Percentage (FGP, Speed of Germination (SG, Germination Energy Percentage (GE%, shoot and root length and root and shoot dry weight. Based on dry matter yield reduction, rice varieties were classified as tolerant (T, moderately tolerant (MT, moderately susceptible (MS or susceptible (S. Germination was not recorded at 20 ds m-1 salt concentration in all cultivars. Salinity decreased FGP, SG, GE% and led to reduction in shoot and root length and dry weight in all varieties and the magnitude of reduction increased with increasing salinity stress. Rice varieties ‘NERICA 12’, ‘IR 20’, ‘IWA 11’ and ‘NERICA 19’ showed greater salt tolerance during germination (germinated at 10 ds m-1 salinity. However, ‘NERICA 1’, ‘IR 29’, and ‘IR 20’ performed better based on dry matter yield reduction. The result suggested that ‘NERICA 1’, ‘IR 29’, and ‘IR 20’ might be used for further study of salinity effect on growth processes and physiological consequences at advanced stage of growth. The physiological responses of rice plants to salinity at various developmental stages are therefore critical for identifying salinity tolerance in the cultivars.

  19. Marker-assisted backcrossing for identification of salt tolerant rice lines

    Directory of Open Access Journals (Sweden)

    M. Moniruzzaman

    2012-12-01

    Full Text Available SSR or microsatellite markers are proved to be ideal for making genetic maps, assisting selection and studying genetic diversity in germplasm. SSR markers are playing important role to identify gene for salt tolerance that can be helpful for plant breeders to develop new cultivars. The experiment was conducted during the period from July 2009 to November 2010 in the experimental field and Biotechnology Laboratory of Plant Breeding Division, Bangladesh Institute of Nuclear Agriculture (BINA, Mymensingh to identify salt tolerant rice line of BC1F1 progenies of Binadhan-5 x FL-478 using SSR markers. Salt tolerant genotype, FL-478 was crossed with high yielding variety, Binadhan-5. Randomly selected 40 BC1F1 progenies along with their two parents (Binadhan-5, FL-478 and F1 were genotyped with microsatellite or SSR markers for identification of salt tolerant rice lines. Parental polymorphism survey was assayed by 10 SSR markers and three polymorphic SSR markers viz., RM 336, RM 510, and RM 585 were selected to evaluate BC1F1 rice lines for salt tolerance. In respect of Primer RM 336, 11 lines were found as salt tolerant and 25 lines were heterozygous and 3 lines were susceptible. Primer RM 510 identified two tolerant, 14 heterozygous and 22 susceptible lines. And primer RM 585 identified 4 lines as tolerant and 35 lines as susceptible. Thus, these markers could be efficiently used in tagging salt tolerant genes, in marker-assisted selection and quantitative trait loci (QTL mapping. The selected BC1F1 could be used for developing BC2F1 and BC2F2 and mapping genes for salinity tolerance.

  20. Rice Nutrition

    Science.gov (United States)

    This chapter presents the symptoms of deficiency and toxicity of the major and minor mineral nutrients in rice, as well as a current synopsis of nutrient transporters and their regulation. The availability of sequences from the recently completed rice genome has furthered the knowledge of how plants...

  1. CULTIVAR RELEASE - BRS Saturno – triticale cultivar

    Directory of Open Access Journals (Sweden)

    Alfredo do Nascimento Junior

    2011-01-01

    Full Text Available The triticale cultivar BRS Saturno was developed by Embrapa (Brazilian Agricultural Research Corporation inpartnership with the Fundação Pró-Sementes de Apoio à Pesquisa. It is the result of a cross between the genotypes PFT 512 and CEP28 – Guará, adapted to the environmental conditions of cultivation in southern Brazil.

  2. Meloidoginose da bananeira (sintomas e susceptibilidade de cultivares)

    OpenAIRE

    Zem, Antonio Carlos; Luiz Gonzaga E. Lordello

    1981-01-01

    Vinte cultivares de banana (Musa spp.) foram avaliados em condições naturais de infestação em relação aos nematóides formadores de galhas Meloidogyne incognita e M. javanica, espécies estas mais difundidas no País. Verificou-se que todos os cultivares foram susceptíveis a M. incognita e oito a M. javanica. Suspeitou-se, no entanto, que caso houvesse infestação uniforme do nematóide javanês, todos os cultivares seriam eventualmente parasitados. Descrevem-se também os sintomas apresentados pelo...

  3. Host Active Defense Responses Occur within 24 Hours after Pathogen Inoculation in the Rice Blast System

    Directory of Open Access Journals (Sweden)

    Zhong-hua WANG

    2007-12-01

    Full Text Available Phenotypical, cytological and molecular responses of rice to the fungus Magnaporthe grisea were studied using rice cultivars and lesion mimic plants. The cultivar Katy was susceptible to several virulent M. grisea isolates, and a Sekiguchi like-lesion mimic mutant of Katy (LmmKaty showed enhanced resistance to these isolates. Lesion mimic phenotype of LmmKaty was rapidly induced by virulent M. grisea isolates or by avirulent ones only at high levels of inoculum. Autofluorescence (a sign of an active defense response was visible under ultraviolet light 24 h after localized inoculation in the incompatible interaction, whereas, not evident in the compatible interaction. Autofluorescence was also observed in LmmKaty 20 h after pathogen inoculation, indicating that rapid cell death is a mechanism of LmmKaty to restrict pathogen invasion. Rapid accumulations of defense related (DR gene transcripts, phenylalanine ammonia lyase and ß-glucanase, were observed beginning at 6 h and were obvious at 16 h and 24 h after inoculation in an incompatible interaction. Rapid transcript accumulations of PR-1 and chitinase had occurred by 24 h after inoculation in an incompatible interaction. Accumulations of these transcripts were delayed in the compatible interaction. These results indicate that host active defense responses occur 24 h after pathogen inoculation and that LmmKaty exhibits enhanced resistance to M. grisea. It is suggested that the autofluorescence and expression of the DR genes after heavy inoculation are important cytological and molecular markers respectively for early determination of the host response to M. grisea in the rice blast system.

  4. Manejo integrado da brusone em arroz no plantio direto e convencional Integrated rice blast disease management under direct drilling and conventional tillage

    Directory of Open Access Journals (Sweden)

    Gisele Barata da Silva

    2003-04-01

    Full Text Available O objetivo deste trabalho foi desenvolver medidas adequadas para o manejo da brusone (Pyricularia grisea, integrando a resistência da cultivar, práticas culturais e o controle químico. Foram realizados dois experimentos no campo, um no plantio direto (PD e outro no plantio convencional (PC, nos anos agrícolas 1998/1999 e 1999/2000. Os tratamentos, num total de 16, em esquema fatorial 2(4, consistiram de duas cultivares, Carajás e Primavera, duas doses de N, 30 e 60 kg ha-1, sementes não tratadas e tratadas com fungicida pyroquilon e parcelas sem pulverização e com duas pulverizações, na parte aérea das plantas, da mistura dos fungicidas benomyl e difenoconazole. A incidência e a severidade da brusone nas folhas e nas panículas foram significativamente menores no PD em relação ao PC. A cultivar Primavera apresentou maior suscetibilidade à brusone nas folhas, independentemente do sistema de plantio. A dose de 60 kg ha-1 de N contribuiu para aumento da brusone nas folhas, no PD e no PC, no segundo ano. As pulverizações com a mistura de fungicidas reduziram a severidade da brusone nas panículas nos dois sistemas de plantio. A produtividade foi maior no PC do que no PD e a cultivar Carajás foi superior à Primavera.The objective of this work was to develop adequate measures for rice blast (Pyricularia grisea management integrating cultivar resistance, cultural practices and chemical control. Two field experiments were carried out, one under direct drilling and the other one under conventional tillage, during two consecutive rice growing seasons, 1998/1999 and 1999/2000. The treatments totaling 16, in a factorial scheme 2(4, included two cultivars, Carajás and Primavera, two levels of N, 30 and 60 kg ha-1, nontreated seed and seed treated with pyroquilon, plots nonsprayed and sprayed with two applications of fungicide mixture benomyl and difenoconazole. The incidence and severity of leaf and panicle blast were significantly lower

  5. Northward expansion of paddy rice in northeastern Asia during 2000-2014.

    Science.gov (United States)

    Dong, J; Xiao, X; Zhang, G; Menarguez, M A; Choi, C Y; Qin, Y; Luo, P; Zhang, Y; Moore, B

    2016-04-28

    Paddy rice in monsoon Asia plays an important role in global food security and climate change. Here we documented annual dynamics of paddy rice areas in the northern frontier of Asia, including Northeastern (NE) China, North Korea, South Korea, and Japan, from 2000-2014 through analysis of satellite images. The paddy rice area has increased by 120% (2.5 to 5.5 million ha) in NE China, in comparison to a decrease in South Korea and Japan, and the paddy rice centroid shifted northward from 41.16 °N to 43.70 °N (~310 km) in this period. Market, technology, policy, and climate together drove the rice expansion in NE China. The increased use of greenhouse nurseries, improved rice cultivars, agricultural subsidy policy, and a rising rice price generally promoted northward paddy rice expansion. The potential effects of large rice expansion on climate change and ecological services should be paid more attention in the future.

  6. Aroma chemistry of African Oryza glaberrima and Oryza sativa rice and their interspecific hybrids.

    Science.gov (United States)

    Cho, Sungeun; Nuijten, Edwin; Shewfelt, Robert L; Kays, Stanley J

    2014-03-15

    To increase rice production in Africa, considerable research has focused on creating interspecific hybrids between African (Oryza glaberrima Steud.) and Asian (O. sativa L.) rice in an attempt to obtain the positive attributes of each in new cultivars. Since flavor is a key criterion in consumer acceptance of rice, as an initial inquiry we characterized and compared the aroma chemistry of selected cultivars of African O. sativa ssp. japonica, O. sativa ssp. indica, O. glaberrima, and their interspecific hybrids grown in West Africa, using gas chromatography-mass spectrometry, gas chromatography-olfactometry and descriptive sensory analysis. Of 41 volatiles identified across seven representative rice cultivars grown in West Africa, 3,5,5-trimethyl-2-cyclopenten-1-one, styrene, eucalyptol, linalool, myrtenal and L-α-terpineol had not been previously reported in rice. Thirty-three odor-active compounds were characterized. 4-Ethylphenol and (E,E)-2,4-heptadienal were unique to O. glaberrima, and pyridine, eucalyptol and myrtenal were described only in an interspecific hybrid. Descriptive sensory analysis indicated 'cooked grain', 'barny' and 'earthy' attributes were statistically different among the cultivars. The aroma chemistry data suggest that it should be possible to separate African cultivars into distinct flavor types thereby facilitating selection of new cultivars with superior flavor in African rice breeding programs. © 2013 Society of Chemical Industry.

  7. The effects of chilling stress after anthesis on the physicochemical properties of rice (Oryza sativa L) starch.

    Science.gov (United States)

    Zhu, Dawei; Wei, Haiyan; Guo, Baowei; Dai, Qigen; Wei, Cunxu; Gao, Hui; Hu, Yajie; Cui, Peiyuan; Li, Min; Huo, Zhongyang; Xu, Ke; Zhang, Hongcheng

    2017-12-15

    This study investigates the effect of chilling stress, over a period of three days after anthesis, on the physicochemical properties of starches derived from six rice cultivars. Chilling stress significantly affected the grain characteristics and physicochemical properties of rice starches, except for those of two varieties, NJ 9108 and ZD 18. In the other four rice cultivars subjected to chilling stress, the content of medium, and large sized granules showed a decrease, and an increase, respectively. Amylose content increased as a result of chilling stress, thereby resulting in starch with a lower swelling power, water solubility, and higher retrogradation enthalpy and gelatinization temperature. Chilling stress led to deterioration of cooked rice quality as determined by the pasting properties of starch. This study indicated that among the cultivars studied, the two rice varieties most resistant to chilling stress after rice anthesis were NJ 9108 and ZD 18. Copyright © 2017 Elsevier Ltd. All rights reserved.

  8. Isolation of a novel PP2C gene from rice and its response to abiotic ...

    African Journals Online (AJOL)

    Biotic and abiotic stresses adversely affect plant growth and improvement. In order to discover new stress-tolerance genes in rice (Oryza sativa L.), we analyzed a global genome expression profiling of the indica cultivar Pei'ai 64S, using Affymetrix rice expression chip, subjected to cold, drought or heat stress. A large ...

  9. Aroma chemistry of African Oryza glaberrima and Oryza sativa rice and their interspecific hybrids

    NARCIS (Netherlands)

    Cho, S.; Nuijten, H.A.C.P.; Shewfelt, R.L.; Kays, S.J.

    2014-01-01

    BackgroundTo increase rice production in Africa, considerable research has focused on creating interspecific hybrids between African (Oryza glaberrima Steud.) and Asian (O. sativa L.) rice in an attempt to obtain the positive attributes of each in new cultivars. Since flavor is a key criterion in

  10. Super Rice Cropping Will Enhance Rice Yield and Reduce CH4 Emission: A Case Study in Nanjing, China

    Directory of Open Access Journals (Sweden)

    Yu JIANG

    2013-11-01

    Full Text Available A pot experiment was performed to learn the differences in plant productivity and CH4 emission between two rice cultivars, super rice variety Ningjing 1 and traditional variety Zhendao 11, which were currently commercially applied in Nanjing, China. Similar seasonal changes of CH4 emission fluxes and soil solution CH4 contents were found between the tested cultivars. Although there was no significant difference in plant biomass production between the cultivars, the grain yield of Ningjing 1 was significantly higher by 35.0% (P < 0.05 than that of Zhendao 11, whereas the total CH4 emission from Ningjing 1 was 35.2% lower (P < 0.05. The main difference in the amounts of CH4 emission between the cultivars occurred in the period from the tillering stage to the heading stage. The biomass-scaled and yield-scaled CH4 emissions were respectively 3.8 and 5.2 mg/g for Ningjing 1, significantly lower than those for Zhendao 11 (7.4 and 12.8 mg/g, respectively. According to the relationships between the plant growth characteristics and the CH4 emission, a stronger root system contributed mainly to the lower CH4 emission of Ningjing 1, as compared with Zhendao 11. Our results demonstrated that super rice has advantages not only in grain productivity but also in CH4 emission mitigation. Further expansion of super rice cropping will enhance rice yield and reduce greenhouse gas emission in China.

  11. Tungsten (W) bioavailability in paddy rice soils and its accumulation in rice (Oryza sativa).

    Science.gov (United States)

    James, Blessing; Zhang, Weili; Sun, Pei; Wu, Mingyan; Li, Hong Hong; Khaliq, Muhammad Athar; Jayasuriya, Pathmamali; James, Swithin; Wang, Guo

    2017-10-10

    The aim of this study was to investigate the accumulation characteristics of tungsten (W) by different indica rice cultivars from the soil and to assess the potential risks to human health via dietary intake of W in rice consumption. A total of 153 rice (ear) samples of 15 cultivars and the corresponding surface soil samples were collected from 7 cities in Fujian Province of southeastern China. The available soil W were extracted using H2C2O4·2H2O-(NH4)2C2O4·H2O at pH 3.3). Results showed that the total soil W ranged from 2.03 mg kg(-1) to 15.34 mg kg(-1 )and available soil W ranged from 0.03 mg kg(-1) to 1.61 mg kg(-1). The W concentration in brown rice varied from 7 μg kg(-1) to 283 μg kg(-1) and was significantly correlated with the available soil W. The highest mean TFavail (transfer factor based on available soil W) was 0.91 for Te-you 627 (hybrid, indica rice), whereas the lowest was 0.08 for Yi-you 673 (hybrid, indica rice). The TFavail decreased with the increase in available soil W, clay content, and cation exchange capacity. The consumption of the brown rice produced from the investigated areas in some cultivars by the present study may cause risks to human health.

  12. Cyanide, a Coproduct of Plant Hormone Ethylene Biosynthesis, Contributes to the Resistance of Rice to Blast Fungus1[W][OA

    Science.gov (United States)

    Seo, Shigemi; Mitsuhara, Ichiro; Feng, Jiao; Iwai, Takayoshi; Hasegawa, Morifumi; Ohashi, Yuko

    2011-01-01

    Rice (Oryza sativa) plants carrying the Pi-i resistance gene to blast fungus Magnaporthe oryzae restrict invaded fungus in infected tissue via hypersensitive reaction or response (HR), which is accompanied by rapid ethylene production and formation of small HR lesions. Ethylene biosynthesis has been implicated to be important for blast resistance; however, the individual roles of ethylene and cyanide, which are produced from the precursor 1-aminocyclopropane-1-carboxylic acid, remain unevaluated. In this study, we found that Pi-i-mediated resistance was compromised in transgenic rice lines, in which ethylene biosynthetic enzyme genes were silenced and then ethylene production was inhibited. The compromised resistance in transgenic lines was recovered by exogenously applying cyanide but not ethephon, an ethylene-releasing chemical in plant tissue. In a susceptible rice cultivar, treatment with cyanide or 1-aminocyclopropane-1-carboxylic acid induced the resistance to blast fungus in a dose-dependent manner, while ethephon did not have the effect. Cyanide inhibited the growth of blast fungus in vitro and in planta, and application of flavonoids, secondary metabolites that exist ubiquitously in the plant kingdom, enhanced the cyanide-induced inhibition of fungal growth. These results suggested that cyanide, whose production is triggered by HR in infected tissue, contributes to the resistance in rice plants via restriction of fungal growth. PMID:21075959

  13. Cultivar architecture modulates spore dispersal by rain splash: A new perspective to reduce disease progression in cultivar mixtures

    Science.gov (United States)

    Vidal, Tiphaine; Lusley, Pauline; Leconte, Marc; de Vallavieille-Pope, Claude; Huber, Laurent

    2017-01-01

    Cultivar mixtures can be used to improve the sustainability of disease management within farming systems by growing cultivars that differ in their disease resistance level in the same field. The impact of canopy aerial architecture on rain-splash dispersal could amplify disease reduction within mixtures. We designed a controlled conditions experiment to study single splash-dispersal events and their consequences for disease. We quantified this impact through the spore interception capacities of the component cultivars of a mixture. Two wheat cultivars, differing in their aerial architecture (mainly leaf area density) and resistance to Septoria tritici blotch, were used to constitute pure stands and mixtures with 75% of resistant plants that accounted for 80% of the canopy leaf area. Canopies composed of 3 rows of plants were exposed to standardized spore fluxes produced by splashing calibrated rain drops on a linear source of inoculum. Disease propagation was measured through spore fluxes and several disease indicators. Leaf susceptibility was higher for upper than for lower leaves. Dense canopies intercepted more spores and mainly limited horizontal spore transfer to the first two rows. The presence of the resistant and dense cultivar made the mixed canopy denser than the susceptible pure stand. No disease symptoms were observed on susceptible plants of the second and third rows in the cultivar mixture, suggesting that the number of spores intercepted by these plants was too low to cause disease symptoms. Both lesion area and disease conditional severity were significantly reduced on susceptible plants within mixtures on the first row beside the inoculum source. Those reductions on one single-splash dispersal event, should be amplified after several cycle over the full epidemic season. Control of splash-dispersed diseases within mixtures could therefore be improved by a careful choice of cultivars taking into consideration both resistance and architecture. PMID

  14. Cultivar architecture modulates spore dispersal by rain splash: A new perspective to reduce disease progression in cultivar mixtures.

    Directory of Open Access Journals (Sweden)

    Tiphaine Vidal

    Full Text Available Cultivar mixtures can be used to improve the sustainability of disease management within farming systems by growing cultivars that differ in their disease resistance level in the same field. The impact of canopy aerial architecture on rain-splash dispersal could amplify disease reduction within mixtures. We designed a controlled conditions experiment to study single splash-dispersal events and their consequences for disease. We quantified this impact through the spore interception capacities of the component cultivars of a mixture. Two wheat cultivars, differing in their aerial architecture (mainly leaf area density and resistance to Septoria tritici blotch, were used to constitute pure stands and mixtures with 75% of resistant plants that accounted for 80% of the canopy leaf area. Canopies composed of 3 rows of plants were exposed to standardized spore fluxes produced by splashing calibrated rain drops on a linear source of inoculum. Disease propagation was measured through spore fluxes and several disease indicators. Leaf susceptibility was higher for upper than for lower leaves. Dense canopies intercepted more spores and mainly limited horizontal spore transfer to the first two rows. The presence of the resistant and dense cultivar made the mixed canopy denser than the susceptible pure stand. No disease symptoms were observed on susceptible plants of the second and third rows in the cultivar mixture, suggesting that the number of spores intercepted by these plants was too low to cause disease symptoms. Both lesion area and disease conditional severity were significantly reduced on susceptible plants within mixtures on the first row beside the inoculum source. Those reductions on one single-splash dispersal event, should be amplified after several cycle over the full epidemic season. Control of splash-dispersed diseases within mixtures could therefore be improved by a careful choice of cultivars taking into consideration both resistance and

  15. Cultivar architecture modulates spore dispersal by rain splash: A new perspective to reduce disease progression in cultivar mixtures.

    Science.gov (United States)

    Vidal, Tiphaine; Lusley, Pauline; Leconte, Marc; de Vallavieille-Pope, Claude; Huber, Laurent; Saint-Jean, Sébastien

    2017-01-01

    Cultivar mixtures can be used to improve the sustainability of disease management within farming systems by growing cultivars that differ in their disease resistance level in the same field. The impact of canopy aerial architecture on rain-splash dispersal could amplify disease reduction within mixtures. We designed a controlled conditions experiment to study single splash-dispersal events and their consequences for disease. We quantified this impact through the spore interception capacities of the component cultivars of a mixture. Two wheat cultivars, differing in their aerial architecture (mainly leaf area density) and resistance to Septoria tritici blotch, were used to constitute pure stands and mixtures with 75% of resistant plants that accounted for 80% of the canopy leaf area. Canopies composed of 3 rows of plants were exposed to standardized spore fluxes produced by splashing calibrated rain drops on a linear source of inoculum. Disease propagation was measured through spore fluxes and several disease indicators. Leaf susceptibility was higher for upper than for lower leaves. Dense canopies intercepted more spores and mainly limited horizontal spore transfer to the first two rows. The presence of the resistant and dense cultivar made the mixed canopy denser than the susceptible pure stand. No disease symptoms were observed on susceptible plants of the second and third rows in the cultivar mixture, suggesting that the number of spores intercepted by these plants was too low to cause disease symptoms. Both lesion area and disease conditional severity were significantly reduced on susceptible plants within mixtures on the first row beside the inoculum source. Those reductions on one single-splash dispersal event, should be amplified after several cycle over the full epidemic season. Control of splash-dispersed diseases within mixtures could therefore be improved by a careful choice of cultivars taking into consideration both resistance and architecture.

  16. Black rice as a functional food in Indonesia

    Directory of Open Access Journals (Sweden)

    Rarastoeti Pratiwi

    2017-03-01

    Full Text Available There are many local black rice cultivars in Indonesia, yet only a few of these are formally describedin the literature.It has been reportedthat black rice has many phytochemicalvariants which may contribute to its use as a functional food, including nutraceuticals andsecondary metabolites such as anthocyanin, oryzanol,and more.The purpose of this article wasto review literature describing black rice cultivars from Indonesia, with a particular focuson its potential use as a functional food.Our literature search revealed several articles that describe black rice in relation to its nutraceuticalproperties and its role in reducing non-communicable diseases. Other studies describe the diversity of local pigmented rice and its potentialfor lowering the risk of hyperlipidemia,hyperglycemia,and for cancer prevention. Black rice has been described as a functional food in several countries;however,there is great diversity among cultivars and further research on Indonesian varieties will determine whether local variants are candidates as well for the development of functional foods.

  17. Composição química de grãos crus de cultivares de Coffea arabica L. suscetíveis e resistentes à Hemileia vastatrix Berg et Br Chemical composition of raw grains of cultivars the Coffea arabica L. susceptible and resistant to Hemileia vastatrix Berg et Br

    Directory of Open Access Journals (Sweden)

    Luciana Maria Vieira Lopes Mendonça

    2007-04-01

    Full Text Available Com este trabalho, buscou-se caracterizar a composição química e físico-química dos grãos crus de 16 cultivares de café Coffea arabica L., com o intuito de avaliar novos materiais desenvolvidos com resistência à ferrugem (Hemileia vastatrix Berg. et Br. em comparação aos tradicionais. Desta forma, frutos provenientes do ensaio de melhoramento genético do MAPA/PROCAFÉ, localizado na Fazenda Experimental de Varginha em MG foram colhidos e transportados imediatamente para o Pólo de Tecnologia em Pós-Colheita do Café da UFLA, onde foram lavados, descascados e secados em terreiro de concreto. Após o beneficiamento, os grãos foram acondicionados em latas de alumínio e armazenados a 15ºC. Os frutos avaliados correspondiam às cultivares 'Acaiá', 'Acauã', 'Bourbon Amarelo', 'Canário', 'Catuaí Amarelo', 'Catuaí Vermelho', 'Catucaí Amarelo', 'Catucaí Vermelho', 'Icatu Amarelo', 'Icatu Vermelho' 'Mundo Novo', 'Palma', 'Rubi', 'Sabiá 398', 'Siriema' e 'Topázio', do ano safra 2002. Os grãos crus foram moídos em moinho de bola com nitrogênio líquido. As análises realizadas foram: açúcares totais, redutores e não-redutores, extrato etéreo, polifenóis e cafeína. Diferenças foram consideradas significativas e as cultivares apresentaram variações para os teores de todos os compostos avaliados, indicando haver uma influência do genótipo sobre esses constituintes.The aim of this article is characterizing the chemical and physical chemical composition of raw grains and analyzing new resistent material to rust (Hemilea vastatrix Berg. et Br. compared to the traditional ones. The fruits were originated from breeding experiments from MAPA/PROCAFÉ, localized in the experimental farm of Varginha , Minas Gerais state. They were harvested and taken to the Postharvest Technology Center of Universidade Federal de Lavras, where they were washed, peeled and dried in a concrete ground. After cleaning, the grains were packed in

  18. Effects of elevated atmospheric CO2 on respiratory rates in mature leaves of two rice cultivars grown at a free-air CO2 enrichment site and analyses of the underlying mechanisms.

    Science.gov (United States)

    Noguchi, Ko; Tsunoda, Tomonori; Miyagi, Atsuko; Kawai-Yamada, Maki; Sugiura, Daisuke; Miyazawa, Shin-Ichi; Tokida, Takeshi; Usui, Yasuhiro; Nakamura, Hirofumi; Sakai, Hidemitsu; Hasegawa, Toshihiro

    2018-02-01

    Respiratory CO2 efflux and O2 uptake rates in leaves change in response to the growth CO2 concentration ([CO2]). The degrees of change vary depending on the responses of cellular processes such as nitrogen (N) assimilation and organic acids accumulation to growth [CO2]. However, the underlying mechanisms remain unclear. Here, we examined the respiratory characteristics of mature leaves of two rice varieties with different yield capacities at different growth stages under ambient and elevated [CO2] conditions at a free-air CO2 enrichment site. We also examined effect of increased water temperature to leaf respiration. We measured the rates of CO2 efflux and O2 uptake, and determined N contents, primary metabolite contents, and maximal activities of respiratory enzymes. The leaf CO2 efflux rates decreased in plants grown at elevated [CO2] in both varieties, and were higher in high-yielding Takanari than in Koshihikari. The leaf O2 uptake rates showed little changes with respect to growth [CO2] and variety. The increased water temperature did not significantly affect the CO2 efflux and O2 uptake rates. The N and amino acids contents were significantly higher in Takanari than in Koshihikari. The enhanced N assimilation in Takanari may have consumed more respiratory NADH, leading to higher CO2 efflux rates. In Koshihikari, the ratio of TCA cycle intermediates changed and maximal activities of enzymes in the TCA cycle decreased at elevated [CO2]. Therefore, the decreased rates of CO2 efflux in Koshihikari may be due to the decreased activities of TCA cycle enzymes at elevated [CO2]. © The Author 2018. Published by Oxford University Press on behalf of Japanese Society of Plant Physiologists. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

  19. Yield responses of 12 okra cultivars to southern root-knot nematode (Meloidogyne incognita

    Directory of Open Access Journals (Sweden)

    Tariq Mukhtar

    Full Text Available ABSTRACT Meloidogyne incognita is one of the most widespread and damaging plant-parasitic nematodes throughout the world and substantially affects growth and yield of okra (Abelmoschus esculentus L. In the present study, effects of M. incognita on yield parameters of 12 okra cultivars with varying levels of resistance or susceptibility were assessed. M. incognita caused significant reductions in yield parameters of okra plants of all the cultivars. Maximum reduction of 34.1% in yield was observed in highly susceptible (HS cultivar Sharmeeli. The nematode caused 20 and 17.6% reductions in yields in susceptible (S cultivars Okra Sindha and Anmol, respectively. Moderately susceptible (MS cultivars suffered 5.9 to 12.9% reductions in yields. In case of moderately resistant (MR cultivars (Sanam, Dikshah, Arka Anamika, Ikra-1 and Ikra-2, the reductions in yields were the minimum and ranged from 2.9 to 6.5%. The reductions in other yield parameters of okra cultivars were observed in the order HS > S > MS > MR. As the MR cultivars suffered less damage by the nematode, they are recommended for cultivation in fields heavily infested with M. incognita.

  20. Bioethanol production from rice straw residues

    Directory of Open Access Journals (Sweden)

    Elsayed B. Belal

    2013-01-01

    Full Text Available A rice straw -cellulose utilizing mold was isolated from rotted rice straw residues. The efficient rice straw degrading microorganism was identified as Trichoderma reesei. The results showed that different carbon sources in liquid culture such as rice straw, carboxymethyl cellulose, filter paper, sugar cane bagasse, cotton stalk and banana stalk induced T. reesei cellulase production whereas glucose or Potato Dextrose repressed the synthesis of cellulase. T. reesei cellulase was produced by the solid state culture on rice straw medium. The optimal pH and temperature for T. reesei cellulase production were 6 and 25 ºC, respectively. Rice straw exhibited different susceptibilities towards cellulase to their conversion to reducing sugars. The present study showed also that, the general trend of rice straw bioconversion with cellulase was more than the general trend by T. reesei. This enzyme effectively led to enzymatic conversion of acid, alkali and ultrasonic pretreated cellulose from rice straw into glucose, followed by fermentation into ethanol. The combined method of acid pretreatment with ultrasound and subsequent enzyme treatment resulted the highest conversion of lignocellulose in rice straw to sugar and consequently, highest ethanol concentration after 7 days fermentation with S. cerevisae yeast. The ethanol yield in this study was about 10 and 11 g.L-1.

  1. Proposal of a growth chamber for growing Super-Dwarf Rice in Space Agriculture

    Science.gov (United States)

    Hirai, Hiroaki; Kitaya, Yoshiaki; Tsukamoto, Koya; Yamashita, Youichirou; Hirai, Takehiro

    Space agriculture needs to be considered to supply food for space crew who stay in space over an extended time period. So far crops such as wheat, onion, oat, pea and lettuce grew to explore the possibility of space agriculture. Although rice is a staple food for most of the world, research on rice cultivation in space has not been done much. Rice grains are nutrient-rich with carbohydrate, protein and dietary fiber. Moreover, rice is a high yield crop and harvested grains have a long shelf life. However, the plant height of standard rice cultivars is relatively long, requiring much space. In addition, rice plants require higher light intensities for greater yield. For these reasons, it is difficult to establish facilities for rice culture in a limited space with a low cost. We propose to employee a super-dwarf cultivar and a small growth chamber with a new type of LEDs. The super-dwarf rice is a short-grain japonica variety and the plant height is approximately 20 cm that is one-fifth as tall as standard cultivars. The LED light used as a light source for this study can provide full spectrum of 380 nm to 750 nm. Air temperature and humidity were controlled by a Peltier device equipped in the chamber. The characteristics of the new type of LEDs and other equipments of the chamber and the ground based performance of super-dwarf rice plants grown in the chamber will be reported.

  2. Differences in Viscosity of Superior and Inferior Spikelets of Japonica Rice with Various Percentages of Apparent Amylose Content.

    Science.gov (United States)

    Ma, Zhao-Hui; Cheng, Hai-Tao; Nitta, Y; Aoki, Naohiro; Chen, Yun; Chen, Heng-Xue; Ohsugi, Ryu; Lyu, Wen-Yan

    2017-05-31

    Viscosity, a crucial characteristic for rice palatability, is affected by endosperm characters. We compared correlations between differences in viscosity of japonica rice with various palatability and endosperm characters. Changes in apparent amylose and protein contents (AAC% and PC%, respectively) and amylopectin side-chain distribution and the relationship of these traits with palatability were investigated in superior and inferior spikelets of good cultivars with low amylose content from Hokkaido and common cultivars from northeastern Japan, using rapid visco analyzer characteristics and rice-grain microstructures. Significant differences occurred in PC%, AAC%, breakdown, setback, peak time, and pasting temperature of different cultivars and grain positions. Amylopectin components showed remarkable differences in grain surfaces, surface layers, and section structure between the grain varieties. Hokkaido cultivars showed better viscosity than northeastern cultivars, particularly initial stage grains. Correlation analysis indicated viscosity was mainly AAC%-dependent, whereas differences in endosperm characteristics between spikelet positions were mainly due to grain-filling temperature.

  3. Respose of Phaseolus vulgaris L. cultivars to drought stress

    Directory of Open Access Journals (Sweden)

    Amalia Domínguez

    2014-01-01

    Full Text Available Tolerance to drought is a desired cultivars of Phaseolus vulgaris L. The present study aimed to determine the response of 22 cultivars of common bean during the early stages of vegetative development character. The plants were subjected to irrigation at 70% or 20% of field capacity (FC for seven days and the indicators were measured relative water content, stomatal opening, stomatal index, proline content and total phenols in leaves. The data obtained were processed using a principal component analysis and the variables studied were represented by a bivariate graph (biplot. It was possible to group the cultivars based on their response in tolerant, moderately tolerant and susceptible to water stress condition induced by irrigation at 20% FC. Stomatal opening and relative water content were recommended to be used as criteria for selecting cultivars tolerant to water stress indicators bean. Key words: PCA, Phaseolus vulgaris L., proline, water stress

  4. Effects of exogenous plant growth regulator abscisic acid-induced resistance in rice on the expression of vitellogenin mRNA in Nilaparvata lugens (Hemiptera: Delphacidae) adult females.

    Science.gov (United States)

    Liu, Jing-Lan; Chen, Xiao; Zhang, Hong-Mei; Yang, Xia; Wong, Andrew

    2014-01-01

    Recent study showed that exogenous abscisic acid (ABA) acts as a regulator of plant resistance. This study investigated average injury scale and callose contents of rice, and vitellogenin (Nlvg) mRNA expression in Nilaparvata lugens (Stål) (Hemiptera: Delphacidae) adult females after third instar nymphs fed on exogenous ABA-treated susceptible [Taichung Native one (TN1)] and moderately resistant (IR42) rice cultivars. The results showed that exogenous ABA significantly decreased average injury scale of rice and Nlvg mRNA expression in N. lugens adults compared with the control (without ABA spraying). Nlvg mRNA expression in N. lugens adults decreased significantly after third instar nymphs fed on ABA-treated (5, 20, and 40 mg/liter) TN1 for 1 and 2 d, and for IR42, after fed on ABA-treated (20 and 40 mg/liter) rice plants for 1 d and after fed on ABA-treated (5, 20, and 40 mg/liter) rice for 2 d decreased significantly. The callose contents showed no significant change for TN1, while for IR42, significantly increased in roots and sheathes after N. lugens infestation under ABA treatments (20 and 40 mg/liter) compared with the control. The decrease of Nlvg mRNA expression may be partially attributed to the increase of callose content of plants. The results provide a profile for concerning the effects of ABA-induced rice plants' defenses on phloem-feeding insects. © The Author 2014. Published by Oxford University Press on behalf of the Entomological Society of America.

  5. Sensitivity of tomato ( Solanum lycopersicum ) cultivars from Turkey ...

    African Journals Online (AJOL)

    The susceptibility of 93 different tomato cultivars that are commonly grown in greenhouses and field in the western Mediterranean region of Turkey have been assessed for resistance to bacterial speck disease caused by Pseudomonas syringae pv. tomato strains. The disease severity indexes (DSI) varied between zero and ...

  6. Response of common bean ( Phaseolus vulgaris L.) cultivars to ...

    African Journals Online (AJOL)

    Yield losses in common bean (Phaseolus vulgaris L.) may occur due to boron (B) deficiency when the susceptible cultivars are grown in calcareous boron deficient soils. The study was therefore aimed at investigating the effects of three B doses: control (0.0 kg ha-1), soil application (3.0 kg ha-1) and foliar fertilization (0.3 kg ...

  7. cultivars to foliar and soil applied boron in boron

    African Journals Online (AJOL)

    STORAGESEVER

    2008-09-17

    Sep 17, 2008 ... Yield losses in common bean (Phaseolus vulgaris L.) may occur due to boron (B) deficiency when the susceptible cultivars are grown in calcareous boron deficient soils. The study was therefore aimed at investigating the effects of three B doses: control (0.0 kg ha-1), soil application (3.0 kg ha-1) and foliar.

  8. RNA-Seq analysis reveals insight into enhanced rice Xa7-mediated bacterial blight resistance at high temperature.

    Directory of Open Access Journals (Sweden)

    Stephen P Cohen

    Full Text Available Plant disease is a major challenge to agriculture worldwide, and it is exacerbated by abiotic environmental factors. During some plant-pathogen interactions, heat stress allows pathogens to overcome host resistance, a phenomenon which could severely impact crop productivity considering the global warming trends associated with climate change. Despite the importance of this phenomenon, little is known about the underlying molecular mechanisms. To better understand host plant responses during simultaneous heat and pathogen stress, we conducted a transcriptomics experiment for rice plants (cultivar IRBB61 containing Xa7, a bacterial blight disease resistance (R gene, that were infected with Xanthomonas oryzae, the bacterial blight pathogen of rice, during high temperature stress. Xa7-mediated resistance is unusual relative to resistance mediated by other R genes in that it functions better at high temperatures. Using RNA-Seq technology, we identified 8,499 differentially expressed genes as temperature responsive in rice cultivar IRBB61 experiencing susceptible and resistant interactions across three time points. Notably, genes in the plant hormone abscisic acid biosynthesis and response pathways were up-regulated by high temperature in both mock-treated plants and plants experiencing a susceptible interaction and were suppressed by high temperature in plants exhibiting Xa7-mediated resistance. Genes responsive to salicylic acid, an important plant hormone for disease resistance, were down-regulated by high temperature during both the susceptible and resistant interactions, suggesting that enhanced Xa7-mediated resistance at high temperature is not dependent on salicylic acid signaling. A DNA sequence motif similar to known abscisic acid-responsive cis-regulatory elements was identified in the promoter region upstream of genes up-regulated in susceptible but down-regulated in resistant interactions. The results of our study suggest that the plant

  9. RNA-Seq analysis reveals insight into enhanced rice Xa7-mediated bacterial blight resistance at high temperature.

    Science.gov (United States)

    Cohen, Stephen P; Liu, Hongxia; Argueso, Cristiana T; Pereira, Andy; Vera Cruz, Casiana; Verdier, Valerie; Leach, Jan E

    2017-01-01

    Plant disease is a major challenge to agriculture worldwide, and it is exacerbated by abiotic environmental factors. During some plant-pathogen interactions, heat stress allows pathogens to overcome host resistance, a phenomenon which could severely impact crop productivity considering the global warming trends associated with climate change. Despite the importance of this phenomenon, little is known about the underlying molecular mechanisms. To better understand host plant responses during simultaneous heat and pathogen stress, we conducted a transcriptomics experiment for rice plants (cultivar IRBB61) containing Xa7, a bacterial blight disease resistance (R) gene, that were infected with Xanthomonas oryzae, the bacterial blight pathogen of rice, during high temperature stress. Xa7-mediated resistance is unusual relative to resistance mediated by other R genes in that it functions better at high temperatures. Using RNA-Seq technology, we identified 8,499 differentially expressed genes as temperature responsive in rice cultivar IRBB61 experiencing susceptible and resistant interactions across three time points. Notably, genes in the plant hormone abscisic acid biosynthesis and response pathways were up-regulated by high temperature in both mock-treated plants and plants experiencing a susceptible interaction and were suppressed by high temperature in plants exhibiting Xa7-mediated resistance. Genes responsive to salicylic acid, an important plant hormone for disease resistance, were down-regulated by high temperature during both the susceptible and resistant interactions, suggesting that enhanced Xa7-mediated resistance at high temperature is not dependent on salicylic acid signaling. A DNA sequence motif similar to known abscisic acid-responsive cis-regulatory elements was identified in the promoter region upstream of genes up-regulated in susceptible but down-regulated in resistant interactions. The results of our study suggest that the plant hormone abscisic

  10. Combined herbicide and saline stress differentially modulates hormonal regulation and antioxidant defense system in Oryza sativa cultivars.

    Science.gov (United States)

    Islam, Faisal; Ali, Basharat; Wang, Jian; Farooq, Muhammad A; Gill, Rafaqat A; Ali, Shafaqat; Wang, Danying; Zhou, Weijun

    2016-10-01

    Plants are simultaneously exposed to a combination of biotic and abiotic stresses in field conditions. Crops respond to the combined stress in a unique way which cannot be understood by extrapolating the results of individual stress. In the present study, effects of individual and combined stress of herbicide (2,4-dichlorophenoxyacetic acid) and salinity (NaCl) on two Oryza sativa cultivars (ZJ 88 and XS 134) were investigated. Both herbicide and saline stress affected the plant growth differentially and produced oxidative stress in rice cultivars. Interestingly, the combination of herbicide and salinity showed a significant protection to both rice cultivars by reducing ROS (H2O2, O2(-)) and lipid peroxidation through modulation of enzymatic (SOD, POD, CAT and APX) and non-enzymatic (TSP, sugars, phenolic and proline) antioxidants. In addition, active regulation of transcript levels of genes encoding Na(+) and K(+) (OsHKT1;5, OsLti6a,b, OsHKT2;1, OsSOS1, OsCNGC1, OsNHX1 and OsAKT1) transporter proteins reduced sodium and enhanced potassium accumulation under combined stress, resulted a better growth and ionic homeostasis in both rice cultivars. The production of ABA and IAA was significantly higher in cultivar XS 134 compared to cultivar ZJ 88 under control conditions. However, combined herbicide and saline stress enhanced the accumulation of phytohormones (IAA and ABA) and transcription of ethylene in cultivar ZJ 88, which might be one of the factors responsible for poor salt tolerance in sensitive cultivar. These findings indicated that herbicide application under saline stress confers tolerance to salinity in rice cultivars, likely by reducing oxidative damage, modulating mineral absorption, upgradation of antioxidant defense and by dynamic regulation of key genes involved in Na(+) and K(+) homeostasis in plants. Copyright © 2016 Elsevier Masson SAS. All rights reserved.

  11. High frequency plant regeneration from desiccated calli of indica rice

    African Journals Online (AJOL)

    An efficient and reproducible protocol is required to achieve high frequency transformation from transformed calli. We report here high frequency plant regeneration from mature seed derived embryogenic calli of two recalcitrant indica rice cultivars HKR-46 and HKR-126 after partial desiccation treatment. Embryogenic and ...

  12. SSR marker based DNA fingerprinting and diversity study in rice ...

    African Journals Online (AJOL)

    The genetic diversity and DNA fingerprinting of 15 elite rice genotypes using 30 SSR primers on chromosome numbers 7-12 was investigated. The results revealed that all the primers showed distinct polymorphism among the cultivars studied indicating the robust nature of microsatellites in revealing polymorphism. Cluster ...

  13. Pessegueiro: cultivar BRS kampai

    Directory of Open Access Journals (Sweden)

    Maria do Carmo Bassols Raseira

    2010-12-01

    Full Text Available RESUMO O programa de Melhoramento Genético de Pessegueiros da Embrapa Clima Temperado tem, entre seus objetivos, a obtenção de cultivares produtoras de frutas para consumo in natura, com características que satisfaçam às exigências dos consumidores. Alguns dos grandes centros consumidores, como é o caso de São Paulo e Curitiba, preferem pêssegos de polpa branca e sabor doce. A cultivar BRS Kampai, obtida de um cruzamento entre 'Chimarrita' e 'Flordaprince', alia a baixa necessidade em frio, o que é uma vantagem em regiões subtropicais, à boa aparência, com sabor superior a qualquer um dos parentais. A colheita dos frutos desta cultivar inicia-se geralmente, em meados de novembro, em Pelotas-RS (em Atibaia, São Paulo, inicia-se na segunda quinzena de outubro, poucos dias antes das cultivares Rubimel (polpa amarela e Premier (polpa branca, sendo ótima substituta para esta última.

  14. BRS Harmonia - triticale cultivar

    Directory of Open Access Journals (Sweden)

    Alfredo do Nascimento Junior

    2015-03-01

    Full Text Available The triticale cultivar BRS Harmonia has moderate resistance to leaf rust, is outstanding in grain yield and quality, and its flour is suitable for cookie baking. It is an excellent alternative as winter crop for the different grain production systems in southcentral Brazil.

  15. BRS 277: Wheat cultivar

    Directory of Open Access Journals (Sweden)

    Eduardo Caierão

    2009-01-01

    Full Text Available The wheat cultivar ‘BRS 277’ was developed by Embrapa (Empresa Brasileira de Pesquisa Agropecuária,resulting from a cross between OR1 and Coker 97-33. The plant height of ‘BRS 277’ is short, frost resistance in the vegetativestage is good and resistance to leaf rust moderate.

  16. Epidemiological effect of gene deployment strategies on bacterial blight of rice.

    Science.gov (United States)

    Ahmed, H U; Finckh, M R; Alfonso, R F; Mundt, C C

    1997-01-01

    ABSTRACT Experiments were conducted in farmers' fields at two locations of the irrigated lowlands of Laguna province in southern Luzon island, Philippines, during the wet seasons of 1993 and 1994. Nine rice populations were studied including pure stands, two-component mixtures, two-gene combinations of backcrossed lines containing varying combinations of the bacterial blight resistance genes Xa-4, xa-5, and Xa-10, and a non-isogenic cultivar containing Xa-4 and partial resistance to bacterial blight. The area under the disease progress curve (AUDPC) of both gene combinations studied was significantly less than the single most effective gene of each combination deployed singly. A mixture of a susceptible and a resistant line expressed an AUDPC significantly less than the mean of its component pure stands, but two other mixtures did not. The cultivar IR20, which contains both Xa-4 and partial resistance, reduced the AUDPC by about two-thirds as compared with IR-BB4, which contains Xa-4 and little or no partial resistance.

  17. Mapping of Novel QTL Regulating Grain Shattering Using Doubled Haploid Population in Rice (Oryza sativaL.)

    National Research Council Canada - National Science Library

    Lee, Gyu-Ho; Kang, In-Kyu; Kim, Kyung-Min

    2016-01-01

    ... 2082.4 cM and covering 12 rice chromosomes with an average interval of 9.6 cM between markers based on 120 DHLs derived from a cross between Cheongcheong indica type cultivar and Nagdong japonica type cultivar...

  18. Allelopathic tolerance of pea cultivars to Sorghum halepense L. (Pers. extracts

    Directory of Open Access Journals (Sweden)

    Georgieva Natalia

    2016-01-01

    Full Text Available In order to evaluate the allelopathic effect of Sorghum halepense extracts on germination and initial growth of six pea (Pisum sativum subsp. sativum, Pisum sativum subsp. arvense cultivars and to identify tolerant cultivars, a laboratory experiment was conducted. The studied cultivars revealed different levels of susceptibility to allelopathic impact of root and aboveground biomass extracts of S. halepense. Root growth parameters (length and weight of the pea cultivars exhibited greater susceptibility to weed extracts than stem parameters. The inhibitory effects of the extracts on germ length of P. sativum ranged from 1.4% (cultivar Mir to 45.0% (Kamerton, on germ weight - from 3.5% (Pleven 4 to 42.9% (K-80, and on seed germination - from 11.8% (Mir to 31.3% (K-80. Total inhibitory effect, i.e. the impact of S. halepense extracts on all studied parameters of P.sativum, revealed that the cultivars Mir and Pleven 4 were the most tolerant. Growing such cultivars may reduce weed damage. Low tolerance was manifested by the cultivar K-80, while Modus, Glyans and Kamerton ranked intermediate. The cultivars with large-size seeds or lower grain protein content were more affected by the depressing effect of S. halepense extracts.

  19. Attenuation of low-temperature stress in rice seedlings

    Directory of Open Access Journals (Sweden)

    Mara Grohs

    2016-06-01

    Full Text Available Rice is a cold-sensitive crop, and its exposure to low-temperature stress, during germination and early seedling growth, can negatively affect the initial stand establishment. Substances that act as growth regulators can be used to mitigate this initial stress. Thus, the influence of gibberellic acid, thiamethoxam and a phytohormone was investigated at the growth variables and antioxidant enzyme activity of the 'Irga 424' and 'Puita Inta CL' rice cultivars, at low-temperature (17 ºC. The products act on the germination percentage of 'Puita Inta CL', but vigor is only influenced by giberellic acid. Giberellic acid influences shoot length, irrespective of cultivar, while thiamethoxam and the phytohormone only affect length in 'Puita Inta CL'. The antioxidant activity depends on the cultivar and organ tested (shoot or root. These products mitigate the effects of cold, thereby preventing the formation of reactive-oxygen species and lipid peroxidation, and positively influence the superoxide dismutase enzyme activity.

  20. Transmission of Rice Black-Streaked Dwarf Virus from Frozen Infected Leaves to Healthy Rice Plants by Small Brown Planthopper (Laodelphax striatellus

    Directory of Open Access Journals (Sweden)

    Tong ZHOU

    2011-06-01

    Full Text Available In order to preserve virus for identifying the resistance of rice varieties against rice black-streaked dwarf disease, a simple and reliable method was developed, through which virus-free small brown planthopper (SBPH acquired rice black-streaked dwarf virus (RBSDV from frozen infected leaves and the virus was transmitted to healthy rice plants. The experimental results showed that SBPH could obtain RBSDV from frozen infected rice leaves and the virus could be transmitted to a susceptible rice variety. For the ability to acquire RBSDV and transmit the virus to healthy plants by SBPH, there was no significant difference between frozen infected leaves and in vitro infected leaves. The novel method could be applied to identification of rice variety resistance to rice black-streaked dwarf disease, facilitating the breeding process for rice black-streaked dwarf disease resistance.

  1. Structural changes of high-amylose rice starch residues following in vitro and in vivo digestion.

    Science.gov (United States)

    Man, Jianmin; Yang, Yang; Zhang, Changquan; Zhou, Xinghua; Dong, Ying; Zhang, Fengmin; Liu, Qiaoquan; Wei, Cunxu

    2012-09-12

    High-amylose cereal starch has a great benefit on human health through its resistant starch content. In this paper, starches were isolated from mature grains of high-amylose transgenic rice line (TRS) and its wild-type rice cultivar Te-qing (TQ) and digested in vitro and in vivo. The structural changes of digestive starch residues were characterized using DSC, XRD, (13)C CP/MAS NMR, and ATR-FTIR. TQ starch was very susceptible to digestion; its residues following in vitro and in vivo digestion showed similar structural characteristics with TQ control starch, which suggested that both amorphous and crystalline structures were simultaneously digested. Both amorphous and the long-range order structures were also simultaneously hydrolyzed in TRS starch, but the short-range order (double helix) structure in the external region of TRS starch granule increased with increasing digestion time. The A-type polymorph of TRS C-type starch was hydrolyzed more rapidly than the B-type polymorph. These results suggested that B-type crystallinity and short-range order structure in the external region of starch granule made TRS starch resistant to digestion.

  2. Molecular Scree ning of Blast Resistance Genes in Rice Germplasms Resistant to Magnaporthe oryzae

    Directory of Open Access Journals (Sweden)

    Liang Yan

    2017-01-01

    Full Text Available Molecular screening of major rice blast resistance genes was determined with molecular markers, which showed close-set linkage to 11 major rice blast resistance genes (Pi-d2, Pi-z, Piz-t, Pi-9, Pi-36, Pi-37, Pi5, Pi-b, Pik-p, Pik-h and Pi-ta2, in a collection of 32 accessions resistant to Magnaporthe oryzae. Out of the 32 accessions, the Pi-d2 and Pi-z appeared to be omnipresent and gave positive express. As the second dominant, Pi-b and Piz-t gene frequencies were 96.9% and 87.5%. And Pik-h and Pik-p gene frequencies were 43.8% and 28.1%, respectively. The molecular marker linkage to Pi-ta2 produced positive bands in eleven accessions, while the molecular marker linkage to Pi-36 and Pi-37 in only three and four accessions, respectively. The natural field evaluation analysis showed that 30 of the 32 accessions were resistant, one was moderately resistant and one was susceptible. Infection types were negatively correlated with the genotype scores of Pi-9, Pi5, Pi-b, Pi-ta2 and Pik-p, although the correlation coefficients were very little. These results are useful in identification and incorporation of functional resistance genes from these germplasms into elite cultivars through marker-assisted selection for improved blast resistance in China and worldwide.

  3. Molecular evolution of shattering loci in U.S. weedy rice

    Science.gov (United States)

    Thurber, Carrie S.; Reagon, Michael; Gross, Briana L.; Olsen, Kenneth M.; Jia, Yulin; Caicedo, Ana L.

    2010-01-01

    Cultivated rice fields worldwide are plagued with weedy rice, a conspecific weed of cultivated rice (Oryza sativa L.). The persistence of weedy rice has been attributed, in part, to its ability to shatter (disperse) seed prior to crop harvesting. In the United States, separately evolved weedy rice groups have been shown to share genomic identity with exotic domesticated cultivars. Here, we investigate the shattering phenotype in a collection of U.S. weedy rice accessions, as well as wild and cultivated relatives. We find that all U.S. weedy rice groups shatter seeds easily, despite multiple origins, and in contrast to a decrease in shattering ability seen in cultivated groups. We assessed allelic identity and diversity at the major shattering locus, sh4, in weedy rice; we find that all cultivated and weedy rice, regardless of population, share similar haplotypes at sh4, and all contain a single derived mutation associated with decreased seed shattering. Our data constitute the strongest evidence to date of an evolution of weeds from domesticated backgrounds. The combination of a shared cultivar sh4 allele and a highly shattering phenotype, suggests that U.S. weedy rice have re-acquired the shattering trait after divergence from their progenitors through alternative genetic mechanisms. PMID:20584132

  4. Analysis on Factors Affecting Seedling Establishment in Rice

    Directory of Open Access Journals (Sweden)

    Ju LUO

    2007-03-01

    Full Text Available Elongations of coleoptile and mesocotyl are related directly to rice seedling establishment in soil and height of plant is related to lodging in rice production. Twelve typical rice cultivars with different lengths of coleoptile and mesocotyl (long, medium and short were selected by screening the lengths of coleoptile and mesocotyl in 1500 accessions. The seedling establishments of these typical cultivars were compared under the combinations of different sowing depths and flooding durations, and two semi-dwarf varieties (G140, Zhong 96–21 with good seedling establishments and optimum mesocotyl lengths were found. The length of mesocotyl was completely fitted negative binomial distribution and the length of coleoptile was nearly fitted lognormal distribution. Analysis of the relationships among mesocotyl, coleoptile, seeding depth, flooding duration, and their interactions to seedling establishment percentage showed that there existed significant relations among mesocotyl, coleoptile, mesocotyl × coleoptile, seeding depth, flooding duration and mesocotyl × sowing depth in the experiment for seedling establishment.

  5. Evaluation of the Incidence and Severity of Olive Leaf Spot caused by Spilocaea oleaginain different olive cultivars in Palestine

    Directory of Open Access Journals (Sweden)

    Ruba Abuamsha

    2013-12-01

    Full Text Available Twelve olive (Olea europaea L. cultivars including Nabali Baladi, Nabali Mohassan, Santa Augustino, Nasohi Jaba`a 1, Nasohi Jaba`a 2, Yunani, Talmasani, Chemlali, Arbequino, Frantoio, Coca and Barouni, were sampled for their susceptibility to Spilocaea oleagina the causal agent for Olive leaf spot (OLS disease on olive trees in Palestine. Investigations were carried out to measure the incidence and severity of the disease at Qabatyia station in Jenin district area Susceptible olive cultivars grown commercially in Palestine include Arbequino, Frantoio and ?Barouni’.The “Nabali” is the most dominant and highly susceptible olive cultivar grown in Palestine. Disease incidence varied greatly among the cultivars F=59.4, df=11, 251, p?0.0001 and was correlated with the severity (y = 0.42x + 9.3, P ? 0.0001, R² = 0.84, y = disease severity and x = disease incidence. Disease severity also varied among different cultivars F=13.9, df=11, 251, p?0.0001. Nabali Mohassan was the most affected susceptible while Barouni was most resistant. Progress of disease severity over time fit the logistic function for all cultivars except for highly susceptible cultivars F=1.56, df=6, 83, p?0.169. The assessment method may be useful to screen olive cultivars for OLS resistance in Palestine.

  6. Uptake and distribution of root-applied or foliar-applied 65Zn after flowering in aerobic rice

    NARCIS (Netherlands)

    Jiang, W.; Struik, P.C.; Lingna, J.; Keulen, van H.; Ming, Z.; Stomph, T.J.

    2007-01-01

    We investigated the uptake and distribution of zinc (Zn) either applied to the roots or to the leaves in rice during grain development. Plants of two aerobic rice cultivars were grown in a nutrient solution with either sufficient Zn or surplus Zn. Root treatment with 1 week`s supply of both 65Zn and

  7. Comparison Between Direct-seeding and Transplanting of Rice in Mazandaran Province: Weed Competition, Yield and Yield Components

    Directory of Open Access Journals (Sweden)

    A Ala

    2014-12-01

    Full Text Available In order to investigate rice competition ability against weeds in direct-seeding and transplanting systems afield experiment was conducted at Mahmud Abad region of Mazandaran province on 2011 growing season. Experimental treatments were studied in a split plot factorial design based on randomized complete blocks with three replicates. Direct-seeding and transplanting of rice in wet seedbed were the main plots and three rice cultivars under two weed management systems (weed free and weed infested were arranged in sub plots. Results showed there was no significant yield difference in both system of rice planting under weed free condition, but yield loss due to weed interference in direct-seeding and transplanting of rice were 66% and 14% respectively.Line 843 which showed high competition ability in transplanting of rice, encountered with low ability due to weed pressure derivedweek early vigor but our traditional cultivar (Tarom Deilamani has acceptable competition ability and better yield sustainabilitythan improved cultivar (Khazar and line 843 in direct seeding system. Cultivars competitiveness could be attributed to more height, higher growth rate in early season, panicle number and higher dry weight of rice. Also in direct seeding related traits to the early vigor was more important than others. Results revealed that direct seeding integrated with weed control could be a good strategy for reducing costs of rice production. In such a system seedling early growth has important role in weed suppression.

  8. Genetic analysis of genetic basis of a physiological disorder "straighthead’’ in rice (Oryza sativa L.)

    Science.gov (United States)

    Straighthead is a physiological disorder in rice that causes yield losses and is a serious threat to rice production worldwide. Identification of QTL conferring resistance will help develop resistant cultivars for straighthead control. We conducted linkage mapping to identify QTL involved with strai...

  9. Impact of phytic acid on nutrient bioaccessibility and antioxidant properties of dehusked rice.

    Science.gov (United States)

    Lee, H H; Loh, S P; Bong, C F J; Sarbini, S R; Yiu, P H

    2015-12-01

    Whole grains consumption promotes health benefits, but demonstrates controversial impacts from phytic acid in meeting requirements of good health. Therefore, this study was aimed to determine the nutrient bioaccessibility and antioxidant properties of rice cultivars named "Adan" or "Bario" and deduce the nutritional impact of phytic acid. Majority of the dehusked rice in the collection showed an acceptable level of in-vitro starch digestibility and in-vitro protein digestibility, but were poor in antioxidant properties and bioaccessibility of minerals (Ca, Fe and Zn). The drawbacks identified in the rice cultivars were due to relatively high phytic acid content (2420.6 ± 94.6 mg/100 g) and low phenolic content (152.39 ± 18.84 μg GAE/g). The relationship between phytic acid content and mineral bioaccessibility was strongest in calcium (r = 0.60), followed by iron (r = 0.40) and zinc (r = 0.27). Phytic acid content did not significantly correlate with in-vitro starch digestibility and in-vitro protein digestibility but showed a weak relationship with antioxidant properties. These suggest that phytic acid could significantly impair the mineral bioaccessibility of dehusked rice, and also act as an important antioxidant in non-pigmented rice. Bario rice cultivars offered dehusked rice with wide range of in-vitro digestibility of starch and protein, and also pigmented rice as a good source of antioxidants. However, there is a need to reduce phytic acid content in dehusked rice for improved mineral bioaccessibility among Bario rice cultivars.

  10. Genome-wide haplotype changes produced by artificial selection during modern rice breeding in Japan.

    Science.gov (United States)

    Yonemaru, Jun-ichi; Yamamoto, Toshio; Ebana, Kaworu; Yamamoto, Eiji; Nagasaki, Hideki; Shibaya, Taeko; Yano, Masahiro

    2012-01-01

    During the last 90 years, the breeding of rice has delivered cultivars with improved agronomic and economic characteristics. Crossing of different lines and successive artificial selection of progeny based on their phenotypes have changed the chromosomal constitution of the ancestors of modern rice; however, the nature of these changes is unclear. The recent accumulation of data for genome-wide single-nucleotide polymorphisms (SNPs) in rice has allowed us to investigate the change in haplotype structure and composition. To assess the impact of these changes during modern breeding, we studied 177 Japanese rice accessions, which were categorized into three groups: landraces, improved cultivars developed from 1931 to 1974 (the early breeding phase), and improved cultivars developed from 1975 to 2005 (the late breeding phase). Phylogenetic tree and structure analysis indicated genetic differentiation between non-irrigated (upland) and irrigated (lowland) rice groups as well as genetic structuring within the irrigated rice group that corresponded to the existence of three subgroups. Pedigree analysis revealed that a limited number of landraces and cultivars was used for breeding at the beginning of the period of systematic breeding and that 11 landraces accounted for 70% of the ancestors of the modern improved cultivars. The values for linkage disequilibrium estimated from SNP alleles and the haplotype diversity determined from consecutive alleles in five-SNP windows indicated that haplotype blocks became less diverse over time as a result of the breeding process. A decrease in haplotype diversity, caused by a reduced number of polymorphisms in the haplotype blocks, was observed in several chromosomal regions. However, our results also indicate that new haplotype polymorphisms have been generated across the genome during the breeding process. These findings will facilitate our understanding of the association between particular haplotypes and desirable phenotypes in

  11. An indica rice genotype showed a similar yield enhancement to that of hybrid rice under free air carbon dioxide enrichment

    Science.gov (United States)

    Zhu, Chunwu; Xu, Xi; Wang, Dan; Zhu, Jianguo; Liu, Gang

    2015-07-01

    Although the rice growth response to FACE (free-air CO2 enrichment) has been widely studied and is considered important within the scientific community, few studies have attempted to examine the effects of FACE on the yield of indica rice, which is typically the parent of indica hybrids in China. The effects of FACE on the yield, yield components, biomass, N uptake and leaf photosynthesis of Yangdao 6 Hao (an indica rice) in China were examined over 2 years. The grain yield increased over 30%, the panicle number increased 12.4% on average, and the spikelet number per panicle also showed an average increase of 8.2% at elevated CO2. FACE caused a significant enhancement in both the filled spikelet percentage (+5.9%) and the individual grain weight (+3.0%). Compared with three prior FACE studies on rice, a similar enhancement of yield in hybrid indica was shown under FACE, with much a higher value than for the japonica rice cultivar (approximately + 13%) because of indica’s stronger sink generation and N uptake capacity, which help coordinate the C/N balance to avoid photosynthetic acclimation. The high enhancement of the indica rice yield under FACE holds promise for improved cultivar selection for future food security.

  12. Evaluation of Rice Resistance to Southern Rice Black-Streaked Dwarf Virus and Rice Ragged Stunt Virus through Combined Field Tests, Quantitative Real-Time PCR, and Proteome Analysis.

    Science.gov (United States)

    Wang, Zhenchao; Yu, Lu; Jin, Linhong; Wang, Wenli; Zhao, Qi; Ran, Longlu; Li, Xiangyang; Chen, Zhuo; Guo, Rong; Wei, Yongtian; Yang, Zhongcheng; Liu, Enlong; Hu, Deyu; Song, Baoan

    2017-02-22

    Diseases caused by southern rice black-streaked dwarf virus (SRBSDV) and rice ragged stunt virus (RRSV) considerably decrease grain yield. Therefore, determining rice cultivars with high resistance to SRBSDV and RRSV is necessary. In this study, rice cultivars with high resistance to SRBSDV and RRSV were evaluated through field trials in Shidian and Mangshi county, Yunnan province, China. SYBR Green I-based quantitative real-time polymerase chain reaction (qRT-PCR) analysis was used to quantitatively detect virus gene expression levels in different rice varieties. The following parameters were applied to evaluate rice resistance: acre yield (A.Y.), incidence of infected plants (I.I.P.), virus load (V.L.), disease index (D.I.), and insect quantity (I.Q.) per 100 clusters. Zhongzheyou1 (Z1) and Liangyou2186 (L2186) were considered the most suitable varieties with integrated higher A.Y., lower I.I.P., V.L., D.I. and I.Q. In order to investigate the mechanism of rice resistance, comparative label-free shotgun liquid chromatography tandem-mass spectrometry (LC-MS/MS) proteomic approaches were applied to comprehensively describe the proteomics of rice varieties' SRBSDV tolerance. Systemic acquired resistance (SAR)-related proteins in Z1 and L2186 may result in the superior resistance of these varieties compared with Fengyouxiangzhan (FYXZ).

  13. Evaluation of Rice Resistance to Southern Rice Black-Streaked Dwarf Virus and Rice Ragged Stunt Virus through Combined Field Tests, Quantitative Real-Time PCR, and Proteome Analysis

    Directory of Open Access Journals (Sweden)

    Zhenchao Wang

    2017-02-01

    Full Text Available Diseases caused by southern rice black-streaked dwarf virus (SRBSDV and rice ragged stunt virus (RRSV considerably decrease grain yield. Therefore, determining rice cultivars with high resistance to SRBSDV and RRSV is necessary. In this study, rice cultivars with high resistance to SRBSDV and RRSV were evaluated through field trials in Shidian and Mangshi county, Yunnan province, China. SYBR Green I-based quantitative real-time polymerase chain reaction (qRT-PCR analysis was used to quantitatively detect virus gene expression levels in different rice varieties. The following parameters were applied to evaluate rice resistance: acre yield (A.Y., incidence of infected plants (I.I.P., virus load (V.L., disease index (D.I., and insect quantity (I.Q. per 100 clusters. Zhongzheyou1 (Z1 and Liangyou2186 (L2186 were considered the most suitable varieties with integrated higher A.Y., lower I.I.P., V.L., D.I. and I.Q. features. In order to investigate the mechanism of rice resistance, comparative label-free shotgun liquid chromatography tandem-mass spectrometry (LC-MS/MS proteomic approaches were applied to comprehensively describe the proteomics of rice varieties’ SRBSDV tolerance. Systemic acquired resistance (SAR-related proteins in Z1 and L2186 may result in the superior resistance of these varieties compared with Fengyouxiangzhan (FYXZ.

  14. The gymnastics of epigenomics in rice.

    Science.gov (United States)

    Banerjee, Aditya; Roychoudhury, Aryadeep

    2017-09-02

    Epigenomics is represented by the high-throughput investigations of genome-wide epigenetic alterations, which ultimately dictate genomic, transcriptomic, proteomic and metabolomic dynamism. Rice has been accepted as the global staple crop. As a result, this model crop deserves significant importance in the rapidly emerging field of plant epigenomics. A large number of recently available data reveal the immense flexibility and potential of variable epigenomic landscapes. Such epigenomic impacts and variability are determined by a number of epigenetic regulators and several crucial inheritable epialleles, respectively. This article highlights the correlation of the epigenomic landscape with growth, flowering, reproduction, non-coding RNA-mediated post-transcriptional regulation, transposon mobility and even heterosis in rice. We have also discussed the drastic epigenetic alterations which are reported in rice plants grown from seeds exposed to the extraterrestrial environment. Such abiotic conditions impose stress on the plants leading to epigenomic modifications in a genotype-specific manner. Some significant bioinformatic databases and in silico approaches have also been explained in this article. These softwares provide important interfaces for comparative epigenomics. The discussion concludes with a unified goal of developing epigenome editing to promote biological hacking of the rice epigenome. Such a cutting-edge technology if properly standardized, can integrate genomics and epigenomics together with the generation of high-yielding trait in several cultivars of rice.

  15. A preliminary study on identification of Thai rice samples by INAA and statistical analysis

    Science.gov (United States)

    Kongsri, S.; Kukusamude, C.

    2017-09-01

    This study aims to investigate the elemental compositions in 93 Thai rice samples using instrumental neutron activation analysis (INAA) and to identify rice according to their types and rice cultivars using statistical analysis. As, Mg, Cl, Al, Br, Mn, K, Rb and Zn in Thai jasmine rice and Sung Yod rice samples were successfully determined by INAA. The accuracy and precision of the INAA method were verified by SRM 1568a Rice Flour. All elements were found to be in a good agreement with the certified values. The precisions in term of %RSD were lower than 7%. The LODs were obtained in range of 0.01 to 29 mg kg-1. The concentration of 9 elements distributed in Thai rice samples was evaluated and used as chemical indicators to identify the type of rice samples. The result found that Mg, Cl, As, Br, Mn, K, Rb, and Zn concentrations in Thai jasmine rice samples are significantly different but there was no evidence that Al is significantly different from concentration in Sung Yod rice samples at 95% confidence interval. Our results may provide preliminary information for discrimination of rice samples and may be useful database of Thai rice.

  16. Current Insights into Research on Rice stripe virus

    Directory of Open Access Journals (Sweden)

    Won Kyong Cho

    2013-09-01

    Full Text Available Rice stripe virus (RSV is one of the most destructive viruses of rice, and greatly reduces rice production in China, Japan, and Korea, where mostly japonica cultivars of rice are grown. RSV is transmitted by the small brown plant-hopper (SBPH in a persistent and circulative-propagative manner. Several methods have been developed for detection of RSV, which is composed of four single-stranded RNAs that encode seven proteins. Genome sequence data and comparative phylogenetic analysis have been used to identify the origin and diversity of RSV isolates. Several rice varieties resistant to RSV have been selected and QTL analysis and fine mapping have been intensively performed to map RSV resistance loci or genes. RSV genes have been used to generate several genetically modified transgenic rice plants with RSV resistance. Recently, genome-wide transcriptome analyses and deep sequencing have been used to identify mRNAs and small RNAs involved in RSV infection; several rice host factors that interact with RSV proteins have also been identified. In this article, we review the current statues of RSV research and propose integrated approaches for the study of interactions among RSV, rice, and the SBPH.

  17. Seed treatment, soil compaction and nitrogen management affect upland rice

    Directory of Open Access Journals (Sweden)

    Veneraldo Pinheiro

    2016-03-01

    Full Text Available Water availability for cultivation of irrigated rice (Oryza sativa L. is decreasing worldwide. Therefore, new technologies are needed to grow rice under aerobic conditions, in order to produce rice grains without yield losses and with lower water consumption. This study aimed at determining the best combination of management options for producing upland rice. A randomized blocks design, in a factorial scheme, was used. The treatments consisted of a combination of five rice cultivars (BRS Caçula, BRS Serra Dourada, BRS Primavera, BRS Sertaneja and BRS Esmeralda with two compaction pressures in the seed furrow (25 kPa or 126 kPa, two types of seed treatment (with or without pesticide and two types of N management (all at sowing or all at topdressing. Applying N at sowing instead of at topdressing produced higher grain yield in the no-tillage system (NTS. Under this system, upland rice genotypes show higher grain yield with higher compaction pressure. Seed treatment with pesticide provided greater grain yield for the BRS Sertaneja, in NTS, and for all genotypes in the conventional tillage system (CTS. BRS Esmeralda, in NTS, and BRS Esmeralda and BRS Primavera, in CTS, were the most productive genotypes. Moreover, in NTS, the application of N at sowing and the compaction pressure on the seed furrow are important for increasing upland rice grain yield. In CTS, seed treatment is important to improve upland rice grain yield.

  18. Profiling the expression domains of a rice-specific microRNA under stress

    Directory of Open Access Journals (Sweden)

    Neha eSharma

    2015-05-01

    Full Text Available Plant microRNAs (miRs have emerged as important regulators of gene expression under normal as well as stressful environments. Rice is an important cereal crop whose productivity is compromised due to various abiotic stress factors such as salt, heat and drought. In the present study, we have investigated the role of rice-specific Osa-miR820, in indica rice cultivars showing contrasting response to salt stress. The dissection of expression patterns indicated that the miR is present in all the tissues but is enriched in the anther tissues. In salinity, the miR levels are up-regulated in the leaf tissues but down-regulated in the root tissues. To map the deregulation under salt stress comprehensive time kinetics of expression was performed in the leaf and root tissues. The reproductive stages were also analyzed under salt stress. It emerged that a common regulatory scheme for Osa-miR820 expression is present in the salt-susceptible Pusa Basmati 1 (PB1 and salt-tolerant Pokkali (PK varieties, although there is a variation in the levels of the miR and its target transcript, OsDRM2. The regulation of Osa-miR820 and its target were also studied under other abiotic stresses. This study thus captures the window for the miR-target correlation and the putative role of this regulation is discussed.This will help in gaining useful insights on the role of species specific miRs in plant development and abiotic stress response.

  19. Mechanisms controlling arsenic uptake in rice grown in mining impacted regions in South China.

    Science.gov (United States)

    Li, Junhui; Dong, Fei; Lu, Ying; Yan, Qiuyan; Shim, Hojae

    2014-01-01

    Foods produced on soils impacted by Pb-Zn mining activities are a potential health risk due to plant uptake of the arsenic (As) associated with such mining. A field survey was undertaken in two Pb-Zn mining-impacted paddy fields in Guangdong Province, China to assess As accumulation and translocation, as well as other factors influencing As in twelve commonly grown rice cultivars. The results showed that grain As concentrations in all the surveyed rice failed national food standards, irrespective of As speciation. Among the 12 rice cultivars, "SY-89" and "DY-162" had the least As in rice grain. No significant difference for As concentration in grain was observed between the rice grown in the two areas that differed significantly for soil As levels, suggesting that the amount of As contamination in the soil is not necessarily the overriding factor controlling the As content in the rice grain. The iron and manganese plaque on the root surface curtailed As accumulation in rice roots. Based on our results, the accumulation of As within rice plants was strongly associated with such soil properties such as silicon, phosphorus, organic matter, pH, and clay content. Understanding the factors and mechanisms controlling As uptake is important to develop mitigation measures that can reduce the amount of As accumulated in rice grains produced on contaminated soils.

  20. Selection and breeding of plant cultivars to minimize cadmium accumulation

    Energy Technology Data Exchange (ETDEWEB)

    Grant, C.A. [AAFC Brandon Research Centre, Box 1000A, R.R. 3, Brandon, MB, R7A 5Y3 (Canada)], E-mail: cgrant@agr.gc.ca; Clarke, J.M. [AAFC Semiarid Prairie Agricultural Research Centre, Swift Current, SK, S9H 3X2 (Canada); Duguid, S. [AAFC Morden Research Station, Morden, MB, R6M 1Y5 (Canada); Chaney, R.L. [USDA, ARS, Animal Manure and Byproducts Laboratory, Room 013, Building 007, BARC-West, 10300 Baltimore Avenue, Beltsville, MD 20705-2350 (United States)

    2008-02-15

    Natural variation occurs in the uptake and distribution of essential and nonessential trace elements among crop species and among cultivars within species. Such variation can be responsible for trace element deficiencies and toxicities, which in turn can affect the quality of food. Plant breeding can be an important tool to both increase the concentration of desirable trace elements and reduce that of potentially harmful trace elements such as cadmium (Cd). Selection programs for a low-Cd content of various crops, including durum wheat, sunflower, rice and soybean have been established and low-Cd durum wheat cultivars and sunflower hybrids have been developed. In durum wheat (Triticum turgidum L. var durum), low-Cd concentration is controlled by a single dominant gene. The trait is highly heritable, and incorporation of the low-Cd allele can help to reduce the average grain Cd to levels below proposed international limits. The allele for low-Cd concentration does not appear to affect major economic traits and should not cause problems when incorporated into durum cultivars. The cost of Cd selection in a breeding program is initially large both in terms of Cd determination and reduced progress towards development of other economic traits, but declines as more breeding lines in the program carry the low-Cd trait and are utilized in new crosses. Production of low-Cd crop cultivars can be used as a tool to reduce the risk of movement of Cd into the human diet.

  1. Feeding performance and life table parameters of Khapra Beetle, Trogoderma granarium Everts (Coleoptera: Dermestidae) on various barley cultivars.

    Science.gov (United States)

    Golizadeh, A; Abedi, Z

    2017-10-01

    The Khapra beetle, Trogoderma granarium Everts (Coleoptera: Dermestidae), is a common pest of cereal grains and other stored products. In this study, the effects of ten barley cultivars (Abidar, Bahman, Line20, Line22, Line30, Lisuei, Lokht11, Makuyi, Sahand, and Sahraa) were evaluated on life table parameters and nutritional indices of T. granarium under the following laboratory conditions: 33 ± 1°C, 60 ± 5% RH, and a photoperiod of 14: 10 (L: D) h. Life history parameters of T. granarium could be appropriate indices in resistance and susceptibility evaluation of barley cultivars. The maximum survival rate of immature stages was observed on Makuyi and Lisuei cultivars and the minimum rate was on Abidar and Line22 cultivars. The shortest development time was on Makuyi cultivar and the longest on Line22 cultivar. Pupal weight was ranged from 2.56 mg on Lokht11 to 4.86 mg on Makuyi. Fecundity and egg-hatching rates were highest on Lisuei cultivar and the adults were long-lived on Makuyi cultivar. The highest r m values were observed on Makuyi and Lisuei cultivars but lower value of it resulted from rearing of T. granarium on Line22 cultivar (0.0350 female per female day-1). The results showed that T. granarium larvae fed on Makuyi cultivar had higher values of relative consumption rate and relative growth rate. The results indicated that Makuyi and Lisuei cultivars were relatively susceptible barley cultivars and Line22 was the most inappropriate cultivar for feeding of T. granarium, which could prove useful in the development of Integrated Pest Management programs for this pest.

  2. THE INFLUENCE OF POTATO CYST NEMATODE G. ROSTOCHIENSIS INFESTATION ON DIFFERENT POTATO CULTIVARS

    Directory of Open Access Journals (Sweden)

    Gregor Urek

    2008-07-01

    Full Text Available The potato cyst nematode Globodera rostochiensis is one of the most serious pests of potato in Slovenia. Precise nematode identification and knowledge about potato cultivars, which are most suitable for growing in the Slovenian climate conditions and most resistant to G. rostochiensis, are necessary to develop an effective integrated pest control. Here we report the results of the influence of G. rostochiensis pathotype Ro1/4 on the yield of different potato cultivars: the susceptible cultivar Desiree, the resistant cultivars White Lady, Miranda, Aladin, Sante and Adora, and the clone KIS 94-1/5-14. The yield of cv. White Lady was the highest and that of susceptible cv. Desiree the lowest. The influence of several resistant and one susceptible potato cultivars on population dynamics of G. rostochiensis was also determined. The total number of cysts/100 cm3 and the number of eggs and juveniles per cyst increased in the susceptible cv. Desiree and decreased in the resistant cultivars White Lady, Sante and Adora.

  3. Physicochemical and sensory profile of rice bran roasted in microwave

    Directory of Open Access Journals (Sweden)

    Marina Costa Garcia

    2012-12-01

    Full Text Available The purpose of this study was to evaluate the physical, chemical, and sensory changes in bran from three rice cultivars according to microwave roasting time. This study analyzed three rice cultivars, BRS Sertaneja (S, BRS Primavera (P, and IRGA 417 (I determining the color parameters (L*, a*, and b * at 6, 9, 12, 15, and 18 minutes of roasting time. After applying the difference from control test, the rice brans with different characteristics aroma and flavor were selected: S and P roasted for 9 and 15 minutes and IRGA 417 roasted for 9, 12, and 15 minutes. These samples were characterized by Free-Choice Profile descriptive sensory analysis, and their chemical composition was also determined. The longer the roasting process, the higher the roasted flavor intensity and aroma. The IRG 417 cultivar roasted for 12 minutes showed a sweeter flavor and aroma. After roasting, the brans remained rich in protein and lipid and presented higher fiber content and lower reducing sugar and phytic acid content. Microwave roasting for 12 minutes can be a viable option for improving the sensory functional and nutritional characteristics of the rice bran considering its use in food products.

  4. Assessment of genetic diversity of rice ( Oryza sativa ) cultivars using ...

    African Journals Online (AJOL)

    The polymorphism information content (PIC) value of the markers ranged between 0.28 and 0.50 with a mean value of 0.45. The highest PIC value (0.50) was observed for ten primers that is, RM 2, RM 24, RM 411, RM 104, RM 266, RM 125, RM 4674, RM 247, RM 3476 and RM 3351 while the lowest was 0.28 for RM 29.

  5. Inheritance of aroma in two rice cultivars | Dartey | Agricultural and ...

    African Journals Online (AJOL)

    No Abstract. Agricultural and Food Science Journal of Ghana Vol. 5 December 2006: 375-380. Full Text: EMAIL FULL TEXT EMAIL FULL TEXT · DOWNLOAD FULL TEXT DOWNLOAD FULL TEXT · http://dx.doi.org/10.4314/afsjg.v5i1.37527 · AJOL African Journals Online. HOW TO USE AJOL... for Researchers · for ...

  6. Resistant and susceptible responses in alfalfa (Medicago sativa) to bacterial stem blight caused by Pseudomonas syringae pv. syringae.

    Science.gov (United States)

    Nemchinov, Lev G; Shao, Jonathan; Lee, Maya N; Postnikova, Olga A; Samac, Deborah A

    2017-01-01

    Bacterial stem blight caused by Pseudomonas syringae pv. syringae is a common disease of alfalfa (Medicago sativa L). Little is known about host-pathogen interactions and host defense mechanisms. Here, individual resistant and susceptible plants were selected from cultivars Maverick and ZG9830 and used for transcript profiling at 24 and 72 hours after inoculation (hai) with the isolate PssALF3. Bioinformatic analysis revealed a number of differentially expressed genes (DEGs) in resistant and susceptible genotypes. Although resistant plants from each cultivar produced a hypersensitive response, transcriptome analyses indicated that they respond differently at the molecular level. The number of DEGs was higher in resistant plants of ZG9830 at 24 hai than in Maverick, suggesting that ZG9830 plants had a more rapid effector triggered immune response. Unique up-regulated genes in resistant ZG9830 plants included genes encoding putative nematode resistance HSPRO2-like proteins, orthologs for the rice Xa21 and soybean Rpg1-b resistance genes, and TIR-containing R genes lacking both NBS and LRR domains. The suite of R genes up-regulated in resistant Maverick plants had an over-representation of R genes in the CC-NBS-LRR family including two genes for atypical CCR domains and a putative ortholog of the Arabidopsis RPM1 gene. Resistance in both cultivars appears to be mediated primarily by WRKY family transcription factors and expression of genes involved in protein phosphorylation, regulation of transcription, defense response including synthesis of isoflavonoids, and oxidation-reduction processes. These results will further the identification of mechanisms involved in resistance to facilitate selection of parent populations and development of commercial varieties.

  7. Resistant and susceptible responses in alfalfa (Medicago sativa to bacterial stem blight caused by Pseudomonas syringae pv. syringae.

    Directory of Open Access Journals (Sweden)

    Lev G Nemchinov

    Full Text Available Bacterial stem blight caused by Pseudomonas syringae pv. syringae is a common disease of alfalfa (Medicago sativa L. Little is known about host-pathogen interactions and host defense mechanisms. Here, individual resistant and susceptible plants were selected from cultivars Maverick and ZG9830 and used for transcript profiling at 24 and 72 hours after inoculation (hai with the isolate PssALF3. Bioinformatic analysis revealed a number of differentially expressed genes (DEGs in resistant and susceptible genotypes. Although resistant plants from each cultivar produced a hypersensitive response, transcriptome analyses indicated that they respond differently at the molecular level. The number of DEGs was higher in resistant plants of ZG9830 at 24 hai than in Maverick, suggesting that ZG9830 plants had a more rapid effector triggered immune response. Unique up-regulated genes in resistant ZG9830 plants included genes encoding putative nematode resistance HSPRO2-like proteins, orthologs for the rice Xa21 and soybean Rpg1-b resistance genes, and TIR-containing R genes lacking both NBS and LRR domains. The suite of R genes up-regulated in resistant Maverick plants had an over-representation of R genes in the CC-NBS-LRR family including two genes for atypical CCR domains and a putative ortholog of the Arabidopsis RPM1 gene. Resistance in both cultivars appears to be mediated primarily by WRKY family transcription factors and expression of genes involved in protein phosphorylation, regulation of transcription, defense response including synthesis of isoflavonoids, and oxidation-reduction processes. These results will further the identification of mechanisms involved in resistance to facilitate selection of parent populations and development of commercial varieties.

  8. IDENTIFICATION OF A MAJOR QUANTITATIVE TRAIT LOCUS CONFERRING RICE BLAST RESISTANCE USING RECOMBINANT INBRED LINES

    Directory of Open Access Journals (Sweden)

    Sobrizal Sobrizal

    2013-05-01

    Full Text Available Blast disease caused by Pyricularia oryzae is one of the limiting factors for rice production world wide. The use of resistant varieties for managing blast disease is considered as the most eco-friendly approaches. However, their resistances may be broken down within a few years due to the appearance of new virulent blast races in the field. The objective of the present study was to identify the quantitative trait locus (QTL conferring resistance to blast disease using 126 recombinant inbred (RI lines originated from a crossing of a durably resistant upland rice genotype (Laka and a highly susceptible rice accession cultivar (Kencana Bali. The RI population was developed through a single seed descent method from 1997 to 2004. Resistance of the RI lines was evaluated for blast in an endemic area of Sukabumi, West Java, in 2005. Disease intensity of the blast was examined following the standard evaluation system developed by the International Rice Research Institute (IRRI. At the same year the RI lines were analyzed with 134 DNA markers. Results of the study showed that one major QTL was found to be associated with blast resistance, and this QTL was located near RM2136 marker on the long arm of chromosome 11. This QTL explained 87% of the phenotypic variation with 37% additive effect. The map position of this QTL differed from that of a partial resistant gene, Pi34, identified previously on chromosome 11 in the Japanese durably resistant variety, Chubu 32. The QTL, however, was almost at the same position as that of the multiple allele-resistant gene, Pik. Therefore, an allelic test should be conducted to clarify the allelic relationship between QTL identified in this study and the Pik. The RI lines are the permanent segregating population that could be very useful for analysing phenotypic variations of important agronomic traits possibly owned by the RI lines. The major QTL identified in this study could be used as a genetic resource in

  9. Wound-induced pectin methylesterases enhance banana (Musa spp. AAA) susceptibility to Fusarium oxysporum f. sp. cubense.

    Science.gov (United States)

    Ma, Li; Jiang, Shuang; Lin, Guimei; Cai, Jianghua; Ye, Xiaoxi; Chen, Houbin; Li, Minhui; Li, Huaping; Takác, Tomás; Samaj, Jozef; Xu, Chunxiang

    2013-05-01

    Recent studies suggest that plant pectin methylesterases (PMEs) are directly involved in plant defence besides their roles in plant development. However, the molecular mechanisms of PME action on pectins are not well understood. In order to understand how PMEs modify pectins during banana (Musa spp.)-Fusarium interaction, the expression and enzyme activities of PMEs in two banana cultivars, highly resistant or susceptible to Fusarium, were compared with each other. Furthermore, the spatial distribution of PMEs and their effect on pectin methylesterification of 10 individual homogalacturonan (HG) epitopes with different degrees of methylesterification (DMs) were also examined. The results showed that, before pathogen treatment, the resistant cultivar displayed higher PME activity than the susceptible cultivar, corresponding well to the lower level of pectin DM. A significant increase in PME expression and activity and a decrease in pectin DM were observed in the susceptible cultivar but not in the resistant cultivar when plants were wounded, which was necessary for successful infection. With the increase of PME in the wounded susceptible cultivar, the JIM5 antigen (low methyestrified HGs) increased. Forty-eight hours after pathogen infection, the PME activity and expression in the susceptible cultivar were higher than those in the resistant cultivar, while the DM was lower. In conclusion, the resistant and the susceptible cultivars differ significantly in their response to wounding. Increased PMEs and thereafter decreased DMs acompanied by increased low methylesterified HGs in the root vascular cylinder appear to play a key role in determination of banana susceptibility to Fusarium.

  10. CRISPR/Cas9-Mediated Gene Editing in Rice (Oryza sativa L. japonica cv. Katy) for Stable Resistance against Blast Fungus (Magnaporthe oryzae)

    Science.gov (United States)

    Rice blast is a recurring and devastating disease in the USA and worldwide. In the USA, the blast-resistance (R) genes found in a tropical japonica cultivar, Katy, reduce blast damages from 1990 to present. The cultivar is still used as a principal donor of blast R genes in developing numerous elit...

  11. Resistance of Some Iraqi Bread Wheat Cultivars to Puccinia triticina

    Directory of Open Access Journals (Sweden)

    E.M. Al-Maaroof

    2005-12-01

    Full Text Available Brown rust (leaf rust caused by Puccinia triticina is one of the most serious diseases of wheat worldwide. In Iraq the occurrence and distribution of brown rust is more regular and uniform than that of other wheat rusts. with yield losses as high as 44% on susceptible wheat cultivars in commercial fields. Recently several promising wheat (Triticum aestivum cultivars with different levels of rust resistance have been released in Iraq. The present work was conducted to postulate the resistance genes in twenty-two Iraqi bread wheat cultivars by testing them with thirteen Mexican races of P. triticina. ‘Thatcher’ near-isogenic lines were used as testers for known resistance genes. Ten day old seedling sets were artificially inoculated with each race, and the infection type was recorded ten days later. Field reactions of the cultivars with the predominantly Iraqi races were determined under field conditions for three years. Results revealed that the Iraqi wheat cultivars possessed brown rust resistance genes Lr1, 3, 10, 13, 16, 17, 23 and 26, either alone or in various combinations. The presence of unknown resistance genes was also postulated in some cultivars. Lr23, derived from Triticum turgidum var. durum, was present in 23% of tested cultivars, whereas Lr13 was present in 18%. The presence of Lr26 in ‘Al-Nour’ and ‘Hashemia’ indicated that they carried the 1BL.1RS wheat-rye translocation. ‘Al-Melad’ displayed resistant reactions to all races used in the study. ‘Tamuz 3’ and ‘Al- Nour’ displayed high adult-plant resistance to P. triticina in the field.

  12. Assessment of Yield and Drought Tolerance in Iranian Sainfoin Cultivars

    Directory of Open Access Journals (Sweden)

    S. Irani

    2016-02-01

    Full Text Available This research was conducted to evaluate 30 sainfoin cultivars in terms of yield, agronomic and morphological traits under water stress condition, using different drought tolerannce indices. A randomized complete block design with three replications was employed during two years at Isfahan University of Technology Research Farm, Isfahan, Iran. Effect of cultivars were significant for all of the measured traits at p<0.01. Also, the interactions of cultivars by moisture environment were significant for number of days to 50% flowering; inflorescence length, fresh and dry matter yield and leaf to stem ratio, indicating that different genotypes had different responses to moisture environments. Among different drought tolerance and susceptibility indices STI, GMP and MP had high correlation coefficients with yield under stress and non stress conditions, indicating that these indices are more suitable as criterion for selection of drought-tolerant cultivars. According to the studied indices and principle component analysis, cultivars 16 (Bardsir, 21 (Fereydunshahr 2, 23 (Najafabad 2 and 27 (Borujerd were found to be the most desirable ones and can be considered as drought tolerant genotypes for future studies.

  13. A systems-wide comparison of red rice (Oryza longistaminata) tissues identifies rhizome specific genes and proteins that are targets for cultivated rice improvement.

    Science.gov (United States)

    He, Ruifeng; Salvato, Fernanda; Park, Jeong-Jin; Kim, Min-Jeong; Nelson, William; Balbuena, Tiago S; Willer, Mark; Crow, John A; May, Greg D; Soderlund, Carol A; Thelen, Jay J; Gang, David R

    2014-02-12

    The rhizome, the original stem of land plants, enables species to invade new territory and is a critical component of perenniality, especially in grasses. Red rice (Oryza longistaminata) is a perennial wild rice species with many valuable traits that could be used to improve cultivated rice cultivars, including rhizomatousness, disease resistance and drought tolerance. Despite these features, little is known about the molecular mechanisms that contribute to rhizome growth, development and function in this plant. We used an integrated approach to compare the transcriptome, proteome and metabolome of the rhizome to other tissues of red rice. 116 Gb of transcriptome sequence was obtained from various tissues and used to identify rhizome-specific and preferentially expressed genes, including transcription factors and hormone metabolism and stress response-related genes. Proteomics and metabolomics approaches identified 41 proteins and more than 100 primary metabolites and plant hormones with rhizome preferential accumulation. Of particular interest was the identification of a large number of gene transcripts from Magnaportha oryzae, the fungus that causes rice blast disease in cultivated rice, even though the red rice plants showed no sign of disease. A significant set of genes, proteins and metabolites appear to be specifically or preferentially expressed in the rhizome of O. longistaminata. The presence of M. oryzae gene transcripts at a high level in apparently healthy plants suggests that red rice is resistant to this pathogen, and may be able to provide genes to cultivated rice that will enable resistance to rice blast disease.

  14. Low-level maternal methylmercury exposure through rice ingestion and potential implications for offspring health

    Energy Technology Data Exchange (ETDEWEB)

    Rothenberg, Sarah E., E-mail: rothenberg.sarah@gmail.com [State Key Laboratory of Environmental Geochemistry, Institute of Geochemistry, Chinese Academy of Sciences, 46 Guanshui Lu, Guiyang 550002 (China); Feng Xinbin, E-mail: fengxinbin@vip.skleg.cn [State Key Laboratory of Environmental Geochemistry, Institute of Geochemistry, Chinese Academy of Sciences, 46 Guanshui Lu, Guiyang 550002 (China); Li Ping [State Key Laboratory of Environmental Geochemistry, Institute of Geochemistry, Chinese Academy of Sciences, 46 Guanshui Lu, Guiyang 550002 (China)

    2011-04-15

    Fish consumption is considered the primary pathway for MeHg (MeHg) exposure; however, MeHg exposure also occurs through rice ingestion. Rice is grown in an aquatic environment and although documented MeHg concentrations in rice are lower compared to fish tissue, human exposures exceed international guidelines in some regions where rice is a staple food and rice MeHg levels are elevated. Studies concerning human health exposure to MeHg should also include populations where maternal MeHg exposure occurs through ingestion of rice. Rice does not contain long-chain polyunsaturated fatty acids, which are associated with confounding developmental outcomes in offspring. Rice is also a staple food for more than half the world's population; therefore, it is critical to investigate the potential health risks of maternal ingestion of rice to the developing fetus, the most susceptible population to the deleterious effects of MeHg. Data concerning MeHg in rice are reviewed and micronutrients in rice are discussed. - Research highlights: > Maternal methylmercury exposure through rice may be important. > Rice does not contain the same micronutrients as fish, but may contain methylmercury. > Effects to offspring from methylmercury without beneficial micronutrients are unknown. - Studies concerning maternal methylmercury exposure and cognitive outcomes for offspring should include populations where rice ingestion is the primary methylmercury exposure pathway.

  15. Expression of Rice Chitinase Gene in Genetically Engineered Tomato Confers Enhanced Resistance to Fusarium Wilt and Early Blight

    Directory of Open Access Journals (Sweden)

    Nyla Jabeen

    2015-09-01

    Full Text Available This is the first study reporting the evaluation of transgenic lines of tomato harboring rice chitinase (RCG3 gene for resistance to two important fungal pathogens Fusarium oxysporum f. sp. lycopersici (Fol causing fusarium wilt and Alternaria solani causing early blight (EB. In this study, three transgenic lines TL1, TL2 and TL3 of tomato Solanum lycopersicum Mill. cv. Riogrande genetically engineered with rice chitinase (RCG 3 gene and their R1 progeny was tested for resistance to Fol by root dip method and A. solani by detached leaf assay. All the R0 transgenic lines were highly resistant to these fungal pathogens compared to non-transgenic control plants. The pattern of segregation of three independent transformant for Fol and A. solani was also studied. Mendelian segregation was observed in transgenic lines 2 and 3 while it was not observed in transgenic line 1. It was concluded that introduction of chitinase gene in susceptible cultivar of tomato not only enhanced the resistance but was stably inherited in transgenic lines 2 and 3.

  16. Microenxertia em cultivares de manga Micrografting in mango cultivars

    OpenAIRE

    Ronaldo Posella Zaccaro; Luiz Carlos Donadio; Eliana Gertrudes Macedo Lemos

    2006-01-01

    Com a finalidade de se testar a viabilidade do método de microenxertia para produzir mudas de mangueira livres do fungo Fusarium subglutinans, agente causal da malformação, foram realizados experimentos utilizando-se do ápice meristemático da cultivar Tommy Atkins. Retirou-se o ápice meristemático do porta-enxerto e colocou-se o ápice meristemático da cultivar-copa, denominando-se essa metodologia de "microenxertia por substituição de ápice meristemático", na qual foram utilizadas as cultivar...

  17. Improving the phenotypic expression of rice genotypes: Rethinking “intensification” for production systems and selection practices for rice breeding

    Directory of Open Access Journals (Sweden)

    Norman Uphoff

    2015-06-01

    expression of rice plants' genetic potential, thereby creating more productive and robust phenotypes from given rice genotypes. Data indicate that increased plant density does not necessarily enhance crop yield potential, as classical breeding methods suggest. Developing cultivars that can achieve their higher productivity under a wide range of plant densities—breeding for density-neutral cultivars using alternative selection strategies—will enable more effective exploitation of available crop growth resources. Density-neutral cultivars that achieve high productivity under ample environmental growth resources can also achieve optimal productivity under limited resources, where lower densities can avert crop failure due to overcrowding. This will become more important to the extent that climatic and other factors become more adverse to crop production. Focusing more on which management practices can evoke the most productive and robust phenotypes from given genotypes is important for rice breeding and improvement programs since it is phenotypes that feed our human populations.

  18. Fine mapping and introgressing qFIS1-2, a major QTL for kernel fissure resistance in rice (Oryza sativa L.)

    Science.gov (United States)

    Rice (Oryza sativa L.) kernel fissuring increases breakage during milling and decreases the value of processed rice. This study employed molecular gene tagging methods to fine-map a fissure resistance (FR) locus in ‘Cybonnet’, a semidwarf tropical japonica cultivar, as well as transfer this trait to...

  19. Genetic diversity analysis of rice (Oryza sativa L.) landraces through RAPD markers

    OpenAIRE

    Alam, M.S.

    2014-01-01

    The molecular marker is a useful tool for assessing genetic variations and resolving cultivar identities. Information on genetic diversity and relationships among rice landraces from Bangladesh is currently very limited. Thirty-five rice genotypes including 33 landraces and 01 HYV of Bangladesh and 1 Indian landrace of particular interest to breeding programs were evaluated by means of random amplified polymorphic DNA (RAPD) technique. For molecular characterization, RAPD markers viz., OPC 03...

  20. Cadmium stress in rice: toxic effects, tolerance mechanisms, and management: a critical review.

    Science.gov (United States)

    Rizwan, Muhammad; Ali, Shafaqat; Adrees, Muhammad; Rizvi, Hina; Zia-Ur-Rehman, Muhammad; Hannan, Fakhir; Qayyum, Muhammad Farooq; Hafeez, Farhan; Ok, Yong Sik

    2016-09-01

    Cadmium (Cd) is one of the main pollutants in paddy fields, and its accumulation in rice (Oryza sativa L.) and subsequent transfer to food chain is a global environmental issue. This paper reviews the toxic effects, tolerance mechanisms, and management of Cd in a rice paddy. Cadmium toxicity decreases seed germination, growth, mineral nutrients, photosynthesis, and grain yield. It also causes oxidative stress and genotoxicity in rice. Plant response to Cd toxicity varies with cultivars, growth condition, and duration of Cd exposure. Under Cd stress, stimulation of antioxidant defense system, osmoregulation, ion homeostasis, and over production of signaling molecules are important tolerance mechanisms in rice. Several strategies have been proposed for the management of Cd-contaminated paddy soils. One such approach is the exogenous application of hormones, osmolytes, and signaling molecules. Moreover, Cd uptake and toxicity in rice can be decreased by proper application of essential nutrients such as nitrogen, zinc, iron, and selenium in Cd-contaminated soils. In addition, several inorganic (liming and silicon) and organic (compost and biochar) amendments have been applied in the soils to reduce Cd stress in rice. Selection of low Cd-accumulating rice cultivars, crop rotation, water management, and exogenous application of microbes could be a reasonable approach to alleviate Cd toxicity in rice. To draw a sound conclusion, long-term field trials are still required, including risks and benefit analysis for various management strategies.

  1. Susceptibility levels of Rhododendron species and hybrids to Phytophthora ramorum

    Science.gov (United States)

    Isabelle De Dobbelaere; Kurt Heungens; Martine Maes

    2006-01-01

    Until now there has been little scientific information available about the susceptibility of different Rhododendron species and cultivars to Phytophthora ramorum. However, growers could use this knowledge as part of their control strategy. In our susceptibility screening we first optimized different inoculation methods on stem and...

  2. Screening of Tomato Cultivars for Resistance to Pulsarium Wilt in Eastern States of Nigeria

    Directory of Open Access Journals (Sweden)

    M. Y. Nwaiwu

    2013-12-01

    Full Text Available The causual organism of the out-break of wilt disease of tomato in the Imo and Rivers States of Nigeria was identified as Fusarium pallindoroseum (Berk and Rav Booth and Sutton, and its pathogenicity was established. Experiments were designed to screen five tomato cultivars for resistance to F. pallidoroseum. Four methods were employed in the screening experiments. The results of all the methods used showed the cultivar IFe-l as the most susceptible (65 % while the Chef Cultivar was the most resistant with less than 10 % of the test plants wilting.

  3. Meloidogyne graminicola: a major threat to rice agriculture.

    Science.gov (United States)

    Mantelin, Sophie; Bellafiore, Stéphane; Kyndt, Tina

    2017-01-01

    Superkingdom Eukaryota; Kingdom Metazoa; Phylum Nematoda; Class Chromadorea; Order Tylenchida; Suborder Tylenchina; Infraorder Tylenchomorpha; Superfamily Tylenchoidea; Family Meloidogynidae; Subfamily Meloidogyninae; Genus Meloidogyne. Microscopic non-segmented roundworm. Plant pathogen; obligate sedentary endoparasitic root-knot nematode. Reproduction: facultative meiotic parthenogenetic species in which amphimixis can occur at a low frequency (c. 0.5%); relatively fast life cycle completed in 19-27 days on rice depending on the temperature range. Reported to infect over 100 plant species, including cereals and grass plants, as well as dicotyledonous plants. Main host: rice (Oryza sativa). Characteristic hook-shaped galls (root swellings), mainly formed at the root tips of infected plants. Alteration of the root vascular system causes disruption of water and nutrient transport, stunting, chlorosis and loss of vigour, resulting in poor growth and reproduction of the plants with substantial yield losses in crops. Nematicides, chemical priming, constant immersion of rice in irrigated fields, crop rotation with resistant or non-host plants, use of nematode-free planting material. Some sources of resistance to Meloidogyne graminicola have been identified in African rice species (O. glaberrima and O. longistaminata), as well as in a few Asian rice cultivars. Major threat to rice agriculture, particularly in Asia. Adapted to flooded conditions, Meloidogyne graminicola causes problems in all types of rice agrosystems. © 2016 BSPP and John Wiley & Sons Ltd.

  4. Development of an Efficient Bioassay Method to Evaluate Resistance of Chili Pepper Cultivars to Ralstonia solanacearum

    Directory of Open Access Journals (Sweden)

    Sung Min Hwang

    2017-12-01

    Full Text Available Bacterial wilt caused by Ralstonia solanacearum is an important disease in cultivation of chili pepper, causing plant death and significant yield losses. Cultivation of disease-resistant varieties is the most suitable measure to control bacterial wilt of chili pepper. To establish an efficient screening method for resistant chili pepper to R. solanacearum, six resistant or susceptible cultivars to the R. solanacearum were selected and the development of bacterial wilt on the cultivars according to several conditions was investigated. Drenching bacterial suspension into the cut roots using a scalpel was more simple and effective to distinguish resistant and susceptible cultivars than inoculation methods of root-dipping or soil-drenching without wounding. A resistant pepper, ’MC4’ to R. solanacearum showed high resistance under the developed conditions which were 21- to 28-day-old pepper inoculated with 1×10⁸ cfu/ml of bacterial suspension. On the other hands, the susceptible cultivars represented high disease severity under the conditions. These results indicated that we developed an efficient method to evaluate resistance of chili pepper cultivars against bacterial wilt. In addition, we successfully evaluated resistance degree of 140 commercial chili pepper cultivars to R. solanacearum using the developed method.

  5. Fusarium head blight incidence and mycotoxin accumulation in three durum wheat cultivars in relation to sowing date and density

    Science.gov (United States)

    Gorczyca, Anna; Oleksy, Andrzej; Gala-Czekaj, Dorota; Urbaniak, Monika; Laskowska, Magdalena; Waśkiewicz, Agnieszka; Stępień, Łukasz

    2018-02-01

    Durum wheat ( Triticum turgidum var. durum) is an important crop in Europe, particularly in the Mediterranean countries. Fusarium head blight (FHB) is considered as one of the most damaging diseases, resulting in yield and quality reduction as well as contamination of grain with mycotoxins. Three winter durum wheat cultivars originating from Austria, Slovakia, and Poland were analyzed during 2012-2014 seasons for FHB incidence and Fusarium mycotoxin accumulation in harvested grain. Moreover, the effects of sowing density and delayed sowing date were evaluated in the climatic conditions of Southern Poland. Low disease severity was observed in 2011/2012 in all durum wheat cultivars analyzed, and high FHB occurrence was recorded in 2012/2013 and 2013/2014 seasons. Fusarium graminearum was the most abundant pathogen, followed by Fusarium avenaceum. Through all three seasons, cultivar Komnata was the most susceptible to FHB and to mycotoxin accumulation, while cultivars Auradur and IS Pentadur showed less symptoms. High susceptibility of cv. Komnata was reflected by the number of Fusarium isolates and elevated mycotoxin (deoxynivalenol, zearalenone, and moniliformin) content in the grain of this cultivar across all three seasons. Nivalenol was identified in the samples of cv. Komnata only. Genotype-dependent differences in FHB susceptibility were observed for the plants sown at optimal date but not at delayed sowing date. It can be hypothesized that cultivars bred in Austria and Slovakia show less susceptibility towards FHB than the cultivar from Poland because of the environmental conditions allowing for more efficient selection of breeding materials.

  6. Molecular Evolution of the Rice Blast Resistance Gene Pi-ta in Invasive Weedy Rice in the USA

    Science.gov (United States)

    Lee, Seonghee; Jia, Yulin; Jia, Melissa; Gealy, David R.; Olsen, Kenneth M.; Caicedo, Ana L.

    2011-01-01

    The Pi-ta gene in rice has been effectively used to control rice blast disease caused by Magnaporthe oryzae worldwide. Despite a number of studies that reported the Pi-ta gene in domesticated rice and wild species, little is known about how the Pi-ta gene has evolved in US weedy rice, a major weed of rice. To investigate the genome organization of the Pi-ta gene in weedy rice and its relationship to gene flow between cultivated and weedy rice in the US, we analyzed nucleotide sequence variation at the Pi-ta gene and its surrounding 2 Mb region in 156 weedy, domesticated and wild rice relatives. We found that the region at and around the Pi-ta gene shows very low genetic diversity in US weedy rice. The patterns of molecular diversity in weeds are more similar to cultivated rice (indica and aus), which have never been cultivated in the US, rather than the wild rice species, Oryza rufipogon. In addition, the resistant Pi-ta allele (Pi-ta) found in the majority of US weedy rice belongs to the weedy group strawhull awnless (SH), suggesting a single source of origin for Pi-ta. Weeds with Pi-ta were resistant to two M. oryzae races, IC17 and IB49, except for three accessions, suggesting that component(s) required for the Pi-ta mediated resistance may be missing in these accessions. Signatures of flanking sequences of the Pi-ta gene and SSR markers on chromosome 12 suggest that the susceptible pi-ta allele (pi-ta), not Pi-ta, has been introgressed from cultivated to weedy rice by out-crossing. PMID:22043312

  7. Molecular evolution of the rice blast resistance gene Pi-ta in invasive weedy rice in the USA.

    Directory of Open Access Journals (Sweden)

    Seonghee Lee

    Full Text Available The Pi-ta gene in rice has been effectively used to control rice blast disease caused by Magnaporthe oryzae worldwide. Despite a number of studies that reported the Pi-ta gene in domesticated rice and wild species, little is known about how the Pi-ta gene has evolved in US weedy rice, a major weed of rice. To investigate the genome organization of the Pi-ta gene in weedy rice and its relationship to gene flow between cultivated and weedy rice in the US, we analyzed nucleotide sequence variation at the Pi-ta gene and its surrounding 2 Mb region in 156 weedy, domesticated and wild rice relatives. We found that the region at and around the Pi-ta gene shows very low genetic diversity in US weedy rice. The patterns of molecular diversity in weeds are more similar to cultivated rice (indica and aus, which have never been cultivated in the US, rather than the wild rice species, Oryza rufipogon. In addition, the resistant Pi-ta allele (Pi-ta found in the majority of US weedy rice belongs to the weedy group strawhull awnless (SH, suggesting a single source of origin for Pi-ta. Weeds with Pi-ta were resistant to two M. oryzae races, IC17 and IB49, except for three accessions, suggesting that component(s required for the Pi-ta mediated resistance may be missing in these accessions. Signatures of flanking sequences of the Pi-ta gene and SSR markers on chromosome 12 suggest that the susceptible pi-ta allele (pi-ta, not Pi-ta, has been introgressed from cultivated to weedy rice by out-crossing.

  8. Aluminium tolerance in rice is antagonistic with nitrate preference and synergistic with ammonium preference.

    Science.gov (United States)

    Zhao, Xue Qiang; Guo, Shi Wei; Shinmachi, Fumie; Sunairi, Michio; Noguchi, Akira; Hasegawa, Isao; Shen, Ren Fang

    2013-01-01

    Acidic soils are dominated chemically by more ammonium and more available, so more potentially toxic, aluminium compared with neutral to calcareous soils, which are characterized by more nitrate and less available, so less toxic, aluminium. However, it is not known whether aluminium tolerance and nitrogen source preference are linked in plants. This question was investigated by comparing the responses of 30 rice (Oryza sativa) varieties (15 subsp. japonica cultivars and 15 subsp. indica cultivars) to aluminium, various ammonium/nitrate ratios and their combinations under acidic solution conditions. indica rice plants were generally found to be aluminium-sensitive and nitrate-preferring, while japonica cultivars were aluminium-tolerant and relatively ammonium-preferring. Aluminium tolerance of different rice varieties was significantly negatively correlated with their nitrate preference. Furthermore, aluminium enhanced ammonium-fed rice growth but inhibited nitrate-fed rice growth. The results suggest that aluminium tolerance in rice is antagonistic with nitrate preference and synergistic with ammonium preference under acidic solution conditions. A schematic diagram summarizing the interactions of aluminium and nitrogen in soil-plant ecosystems is presented and provides a new basis for the integrated management of acidic soils.

  9. Microenxertia em cultivares de manga

    OpenAIRE

    Zaccaro,Ronaldo Posella; Donadio,Luiz Carlos; Lemos,Eliana Gertrudes Macedo

    2006-01-01

    Com a finalidade de se testar a viabilidade do método de microenxertia para produzir mudas de mangueira livres do fungo Fusarium subglutinans, agente causal da malformação, foram realizados experimentos utilizando-se do ápice meristemático da cultivar Tommy Atkins. Retirou-se o ápice meristemático do porta-enxerto e colocou-se o ápice meristemático da cultivar-copa, denominando-se essa metodologia de "microenxertia por substituição de ápice meristemático", na qual foram utilizadas as cultivar...

  10. Selection of strawberry cultivars with tolerance to Tetranychus urticae (Acari: Tetranychidae) and high yield under different managements.

    Science.gov (United States)

    Costa, A F; Teodoro, P E; Bhering, L L; Fornazier, M J; Andrade, J S; Martins, D S; Zanuncio Junior, J S

    2017-04-28

    Tetranychus urticae Koch (Acari: Tetranychidae) is considered the main pest of strawberry. Several factors can favor its development, among them the genotype susceptibility and cropping system. The aims of this study were to evaluate the agronomic performance of strawberry cultivars under different managements and to identify strawberry cultivars that meet tolerance to T. urticae and high fruit yield. Thirteen cultivars of strawberry ('Albion', 'Aleluia', 'Aromas', 'Camarosa', 'Camino Real', 'Campinas', 'Diamante', 'Dover', 'Festival', 'Seascape', 'Toyonoka', 'Tudla', and 'Ventana') under three managements (open field, low tunnel, and high tunnel) were evaluated. The T. urticae attack to different cultivars was influenced by managements, being low tunnel the one that provided higher infestations in the most evaluated cultivars. 'Camarosa' was the cultivar with the lower incidence of pest and 'Dover' had the higher infestation. The genotype most suitable for growing under different managements is the 'Festival' genotype, since it meets tolerance to T. urticae, high fruit yield, and phenotypic stability.

  11. Non-destructive assessment of plant nitrogen parameters using leaf chlorophyll measurements in rice

    Directory of Open Access Journals (Sweden)

    Syed Tahir Ata-Ul-Karim

    2016-12-01

    Full Text Available Non-destructive assessment of plant nitrogen (N status is essential for efficient crop production and N management in intensive rice (Oryza sativa L. cropping systems. Chlorophyll meter (SPAD-502 has been widely used as a rapid, non-destructive and cost-effective diagnostic tool for in-season assessment of crop N status. The present study was intended to establish the quantitative relationships between chlorophyll meters readings, plant N concentration (PNC, N nutrition index (NNI, accumulated N deficit (AND, and N requirement (NR, as well as to compare the stability of these relationships at different vegetative growth stages in Japonica and Indica rice cultivars. Seven multi-locational field experiments using varied N rates and seven rice cultivars were conducted in east China. The results showed that the PNC and chlorophyll meters readings increased with increasing N application rates across the cultivars, growing seasons, and sites. The PNC and chlorophyll meters readings under varied N rates ranged from 2.29 to 3.21, 1.06 to 1.82 and 37.10 to 45.4 and 37.30 to 46.6, respectively, at TL and HD stages for Japonica rice cultivars, while they ranged from 2.25 to 3.23, 1.34 to 1.91 and 35.6 to 43.3 and 37.3 to 45.5 for Indica rice cultivars, respectively. The quantitative relationships between chlorophyll meters readings, PNC, NNI, AND, and NR established at different crop growth stages in two rice ecotypes, were highly significant with R2 values ranging from 0.69 to 0.93 and 0.71 to 0.86 for Japonica and Indica rice, respectively. The strongest relationships were observed for AND and NR at panicle initiation and booting stages in both rice ecotypes. The validation of the relationships developed in the present study with an independent data exhibited a solid model performance and confirmed their robustness as a reliable and rapid diagnostic tool for in-season estimation of plant N parameters for sustainable N management in rice. The results of

  12. Genotypic and environmental variation in cadmium, chromium, lead and copper in rice and approaches for reducing the accumulation

    Energy Technology Data Exchange (ETDEWEB)

    Cao, Fangbin; Wang, Runfeng [Institute of Crop Science, Department of Agronomy, College of Agriculture and Biotechnology, Zijingang Campus, Zhejiang University, Hangzhou 310058 (China); Cheng, Wangda [Jiaxing Academy of Agricultural Sciences, Jiaxing 314016 (China); Zeng, Fanrong; Ahmed, Imrul Mosaddek; Hu, Xinna; Zhang, Guoping [Institute of Crop Science, Department of Agronomy, College of Agriculture and Biotechnology, Zijingang Campus, Zhejiang University, Hangzhou 310058 (China); Wu, Feibo, E-mail: wufeibo@zju.edu.cn [Institute of Crop Science, Department of Agronomy, College of Agriculture and Biotechnology, Zijingang Campus, Zhejiang University, Hangzhou 310058 (China)

    2014-10-15

    The field scale trials revealed significant genotypic and environmental differences in grain heavy metal (HM) concentrations of 158 newly developed rice varieties grown in twelve locations of Zhejiang province of China. Grain Pb and Cd contents in 5.3% and 0.4% samples, respectively, were above the maximum permissible concentration (MPC);