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Sample records for surveys species counts

  1. On the use of 10-minute point counts and 10-species lists for surveying birds in lowland Atlantic Forests in southeastern Brazil

    Directory of Open Access Journals (Sweden)

    Vagner Cavarzere

    2012-01-01

    Full Text Available Due to rapid and continuous deforestation, recent bird surveys in the Atlantic Forest are following rapid assessment programs to accumulate significant amounts of data during short periods of time. During this study, two surveying methods were used to evaluate which technique rapidly accumulated most species (> 90% of the estimated empirical value at lowland Atlantic Forests in the state of São Paulo, southeastern Brazil. Birds were counted during the 2008-2010 breeding seasons using 10-minute point counts and 10-species lists. Overall, point counting detected as many species as lists (79 vs. 83, respectively, and 88 points (14.7 h detected 90% of the estimated species richness. Forty-one lists were insufficient to detect 90% of all species. However, lists accumulated species faster in a shorter time period, probably due to the nature of the point count method in which species detected while moving between points are not considered. Rapid assessment programs in these forests will rapidly detect more species using 10-species lists. Both methods shared 63% of all forest species, but this may be due to spatial and temporal mismatch between samplings of each method.

  2. Influence of call broadcast timing within point counts and survey duration on detection probability of marsh breeding birds

    Directory of Open Access Journals (Sweden)

    Douglas C. Tozer

    2017-12-01

    Full Text Available The Standardized North American Marsh Bird Monitoring Protocol recommends point counts consisting of a 5-min passive observation period, meant to be free of broadcast bias, followed by call broadcasts to entice elusive species to reveal their presence. Prior to this protocol, some monitoring programs used point counts with broadcasts during the first 5 min of 10-min counts, and have since used 15-min counts with an initial 5-min passive period (P1 followed by 5 min of broadcasts (B and a second 5-min passive period (P2 to ensure consistency across years and programs. Influence of timing of broadcasts within point counts and point count duration, however, have rarely been assessed. Using data from 23,973 broadcast-assisted 15-min point counts conducted throughout the Great Lakes-St. Lawrence region between 2008 and 2016 by Bird Studies Canada's Marsh Monitoring Program and Central Michigan University's Great Lakes Coastal Wetland Monitoring Program, we estimated detection probabilities of individuals for 14 marsh breeding bird species during P1B compared to BP2, P1 compared to P2, and P1B compared to P1BP2. For six broadcast species and American Bittern (Botaurus lentiginosus, we found no significant difference in detection during P1B compared to BP2, and no significant difference in four of the same seven species during P1 compared to P2. We observed small but significant differences in detection for 7 of 14 species during P1B compared to P1BP2. We conclude that differences in timing of broadcasts causes no bias based on counts from entire 10-minute surveys, although P1B should be favored over BP2 because the same amount of effort in P1B avoids broadcast bias in all broadcast species, and 10-min surveys are superior to 15-min surveys because modest gains in detection of some species does not warrant the additional effort. We recommend point counts consisting of 5 min of passive observation followed by broadcasts, consistent with the standardized

  3. Counting and Surveying Homeless Youth: Recommendations from YouthCount 2.0!, a Community-Academic Partnership.

    Science.gov (United States)

    Narendorf, Sarah C; Santa Maria, Diane M; Ha, Yoonsook; Cooper, Jenna; Schieszler, Christine

    2016-12-01

    Communities across the United States are increasing efforts to find and count homeless youth. This paper presents findings and lessons learned from a community/academic partnership to count homeless youth and conduct an in depth research survey focused on the health needs of this population. Over a 4 week recruitment period, 632 youth were counted and 420 surveyed. Methodological successes included an extended counting period, broader inclusion criteria to capture those in unstable housing, use of student volunteers in health training programs, recruiting from magnet events for high risk youth, and partnering with community agencies to disseminate findings. Strategies that did not facilitate recruitment included respondent driven sampling, street canvassing beyond known hotspots, and having community agencies lead data collection. Surveying was successful in gathering data on reasons for homelessness, history in public systems of care, mental health history and needs, sexual risk behaviors, health status, and substance use. Youth were successfully surveyed across housing types including shelters or transitional housing (n = 205), those in unstable housing such as doubled up with friends or acquaintances (n = 75), and those who were literally on the streets or living in a place not meant for human habitation (n = 140). Most youth completed the self-report survey and provided detailed information about risk behaviors. Recommendations to combine research data collection with counting are presented.

  4. Reviving common standards in point-count surveys for broad inference across studies

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    Matsuoka, Steven M.; Mahon, C. Lisa; Handel, Colleen M.; Solymos, Peter; Bayne, Erin M.; Fontaine, Patricia C.; Ralph, C.J.

    2014-01-01

    We revisit the common standards recommended by Ralph et al. (1993, 1995a) for conducting point-count surveys to assess the relative abundance of landbirds breeding in North America. The standards originated from discussions among ornithologists in 1991 and were developed so that point-count survey data could be broadly compared and jointly analyzed by national data centers with the goals of monitoring populations and managing habitat. Twenty years later, we revisit these standards because (1) they have not been universally followed and (2) new methods allow estimation of absolute abundance from point counts, but these methods generally require data beyond the original standards to account for imperfect detection. Lack of standardization and the complications it introduces for analysis become apparent from aggregated data. For example, only 3% of 196,000 point counts conducted during the period 1992-2011 across Alaska and Canada followed the standards recommended for the count period and count radius. Ten-minute, unlimited-count-radius surveys increased the number of birds detected by >300% over 3-minute, 50-m-radius surveys. This effect size, which could be eliminated by standardized sampling, was ≥10 times the published effect sizes of observers, time of day, and date of the surveys. We suggest that the recommendations by Ralph et al. (1995a) continue to form the common standards when conducting point counts. This protocol is inexpensive and easy to follow but still allows the surveys to be adjusted for detection probabilities. Investigators might optionally collect additional information so that they can analyze their data with more flexible forms of removal and time-of-detection models, distance sampling, multiple-observer methods, repeated counts, or combinations of these methods. Maintaining the common standards as a base protocol, even as these study-specific modifications are added, will maximize the value of point-count data, allowing compilation and

  5. 2014-2016 Avian Point Count and Migration Surveys at Site 300 for the Lawrence Livermore National Laboratory

    Energy Technology Data Exchange (ETDEWEB)

    Fratanduono, M. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)

    2016-04-14

    The primary goals of the surveys were to: 1) collect minutes of bird activity within Site 300, 2) consider relative abundance of the different bird species occurring within the Site, 3) collect behavioral information, and 4) provide compelling evidence to determine the status of the Site as a migration corridor or migration stopover site. To this end, two survey types were conducted: avian point counts were conducted on a monthly basis from February 2014 through January 2016 and migration surveys were conducted over two three-month periods from September 2014 through November 2014, and September 2015 through November 2015. These two surveys types provided the opportunity to observe avian species in a variety of conditions across a two year period. Whenever possible or relevant, the observations of either survey were used to inform and complement the observations of the other survey in pursuit of the above goals. Both survey types are described below.

  6. Poisson and negative binomial item count techniques for surveys with sensitive question.

    Science.gov (United States)

    Tian, Guo-Liang; Tang, Man-Lai; Wu, Qin; Liu, Yin

    2017-04-01

    Although the item count technique is useful in surveys with sensitive questions, privacy of those respondents who possess the sensitive characteristic of interest may not be well protected due to a defect in its original design. In this article, we propose two new survey designs (namely the Poisson item count technique and negative binomial item count technique) which replace several independent Bernoulli random variables required by the original item count technique with a single Poisson or negative binomial random variable, respectively. The proposed models not only provide closed form variance estimate and confidence interval within [0, 1] for the sensitive proportion, but also simplify the survey design of the original item count technique. Most importantly, the new designs do not leak respondents' privacy. Empirical results show that the proposed techniques perform satisfactorily in the sense that it yields accurate parameter estimate and confidence interval.

  7. Biofluorescence as a survey tool for cryptic marine species.

    Science.gov (United States)

    De Brauwer, Maarten; Hobbs, Jean-Paul A; Ambo-Rappe, Rohani; Jompa, Jamaluddin; Harvey, Euan S; McIlwain, Jennifer L

    2017-10-06

    As ecosystems come under increasing anthropogenic pressure, rare species face the highest risk of extinction. Paradoxically, data necessary to evaluate the conservation status of rare species are often lacking because of the challenges of detecting species with low abundance. One group of fishes subject to this undersampling bias are those with cryptic body patterns. Twenty-one percent of cryptic fish species assessed for their extinction risk (International Union for Conservation of Nature [IUCN]) are data deficient. We developed a nondestructive method for surveying cryptically patterned marine fishes based on the presence of biofluorescence (underwater biofluorescence census, UBC). Blue LED torches were used to investigate how widespread biofluorescence was in cryptic reef fishes in the Coral Triangle region. The effectiveness of UBC to generate abundance data was tested on a data-deficient pygmy seahorse species (Hippocampus bargibanti) and compared with data obtained from standard underwater visual census (UVC) surveys. We recorded 95 reef fish species displaying biofluorescence, 73 of which had not been previously described as biofluorescent. Of those fish with cryptic patterns, 87% were biofluorescent compared with 9% for noncryptic fishes. The probability of species displaying biofluorescence was 70.9 times greater for cryptic species than for noncryptic species. Almost twice the number of H. bargibanti was counted using the UBC compared with UVC. For 2 triplefin species (Ucla xenogrammus, Enneapterygius tutuilae), the abundance detected with UBC was triple that detected with UVC. The UBC method was effective at finding cryptic species that would otherwise be difficult to detect and thus will reduce interobserver variability inherent to UVC surveys. Biofluorescence is ubiquitous in cryptic fishes, making this method applicable across a wide range of species. Data collected using UBC could be used with multiple IUCN criteria to assess the extinction risk of

  8. Bias correction in species distribution models: pooling survey and collection data for multiple species.

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    Fithian, William; Elith, Jane; Hastie, Trevor; Keith, David A

    2015-04-01

    Presence-only records may provide data on the distributions of rare species, but commonly suffer from large, unknown biases due to their typically haphazard collection schemes. Presence-absence or count data collected in systematic, planned surveys are more reliable but typically less abundant.We proposed a probabilistic model to allow for joint analysis of presence-only and survey data to exploit their complementary strengths. Our method pools presence-only and presence-absence data for many species and maximizes a joint likelihood, simultaneously estimating and adjusting for the sampling bias affecting the presence-only data. By assuming that the sampling bias is the same for all species, we can borrow strength across species to efficiently estimate the bias and improve our inference from presence-only data.We evaluate our model's performance on data for 36 eucalypt species in south-eastern Australia. We find that presence-only records exhibit a strong sampling bias towards the coast and towards Sydney, the largest city. Our data-pooling technique substantially improves the out-of-sample predictive performance of our model when the amount of available presence-absence data for a given species is scarceIf we have only presence-only data and no presence-absence data for a given species, but both types of data for several other species that suffer from the same spatial sampling bias, then our method can obtain an unbiased estimate of the first species' geographic range.

  9. Reviving common standards in point-count surveys for broad inference across studies

    Science.gov (United States)

    Steven M. Matsuoka; C. Lisa Mahon; Colleen M. Handel; Péter Sólymos; Erin M. Bayne; Patricia C. Fontaine; C. John Ralph

    2014-01-01

    We revisit the common standards recommended by Ralph et al. (1993, 1995a) for conducting point-count surveys to assess the relative abundance of landbirds breeding in North America. The standards originated from discussions among ornithologists in 1991 and were developed so that point-count survey data could be broadly compared and jointly analyzed by national data...

  10. Recent trends in counts of migrant hawks from northeastern North America

    Science.gov (United States)

    Titus, K.; Fuller, M.R.

    1990-01-01

    Using simple regression, pooled-sites route-regression, and nonparametric rank-trend analyses, we evaluated trends in counts of hawks migrating past 6 eastern hawk lookouts from 1972 to 1987. The indexing variable was the total count for a season. Bald eagle (Haliaeetus leucocephalus), peregrine falcon (Falco peregrinus), merlin (F. columbarius), osprey (Pandion haliaetus), and Cooper's hawk (Accipiter cooperii) counts increased using route-regression and nonparametric methods (P 0.10). We found no consistent trends (P > 0.10) in counts of sharp-shinned hawks (A. striatus), northern goshawks (A. gentilis) red-shouldered hawks (Buteo lineatus), red-tailed hawks (B. jamaicensis), rough-legged hawsk (B. lagopus), and American kestrels (F. sparverius). Broad-winged hawk (B. platypterus) counts declined (P < 0.05) based on the route-regression method. Empirical comparisons of our results with those for well-studied species such as the peregrine falcon, bald eagle, and osprey indicated agreement with nesting surveys. We suggest that counts of migrant hawks are a useful and economical method for detecting long-term trends in species across regions, particularly for species that otherwise cannot be easily surveyed.

  11. 2012 School Libraries Count! National Longitudinal Survey of School Library Programs

    Science.gov (United States)

    American Association of School Librarians (NJ1), 2012

    2012-01-01

    AASL's School Libraries Count! annual longitudinal survey is an online survey that is open to all primary and secondary school library programs to participate. The 2012 survey was launched on January 24th and closed on March 20th. The survey was publicized through various professional organizations and events and through word of mouth. Data…

  12. Assessment of frequency and duration of point counts when surveying for golden eagle presence

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    Skipper, Ben R.; Boal, Clint W.; Tsai, Jo-Szu; Fuller, Mark R.

    2017-01-01

    We assessed the utility of the recommended golden eagle (Aquila chrysaetos) survey methodology in the U.S. Fish and Wildlife Service 2013 Eagle Conservation Plan Guidance. We conducted 800-m radius, 1-hr point-count surveys broken into 20-min segments, during 2 sampling periods in 3 areas within the Intermountain West of the United States over 2 consecutive breeding seasons during 2012 and 2013. Our goal was to measure the influence of different survey time intervals and sampling periods on detectability and use estimates of golden eagles among different locations. Our results suggest that a less intensive effort (i.e., survey duration shorter than 1 hr and point-count survey radii smaller than 800 m) would likely be inadequate for rigorous documentation of golden eagle occurrence pre- or postconstruction of wind energy facilities. Results from a simulation analysis of detection probabilities and survey effort suggest that greater temporal and spatial effort could make point-count surveys more applicable for evaluating golden eagle occurrence in survey areas; however, increased effort would increase financial costs associated with additional person-hours and logistics (e.g., fuel, lodging). Future surveys can benefit from a pilot study and careful consideration of prior information about counts or densities of golden eagles in the survey area before developing a survey design. If information is lacking, survey planning may be best served by assuming low detection rates and increasing the temporal and spatial effort.

  13. Using citizen science butterfly counts to predict species population trends.

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    Dennis, Emily B; Morgan, Byron J T; Brereton, Tom M; Roy, David B; Fox, Richard

    2017-12-01

    Citizen scientists are increasingly engaged in gathering biodiversity information, but trade-offs are often required between public engagement goals and reliable data collection. We compared population estimates for 18 widespread butterfly species derived from the first 4 years (2011-2014) of a short-duration citizen science project (Big Butterfly Count [BBC]) with those from long-running, standardized monitoring data collected by experienced observers (U.K. Butterfly Monitoring Scheme [UKBMS]). BBC data are gathered during an annual 3-week period, whereas UKBMS sampling takes place over 6 months each year. An initial comparison with UKBMS data restricted to the 3-week BBC period revealed that species population changes were significantly correlated between the 2 sources. The short-duration sampling season rendered BBC counts susceptible to bias caused by interannual phenological variation in the timing of species' flight periods. The BBC counts were positively related to butterfly phenology and sampling effort. Annual estimates of species abundance and population trends predicted from models including BBC data and weather covariates as a proxy for phenology correlated significantly with those derived from UKBMS data. Overall, citizen science data obtained using a simple sampling protocol produced comparable estimates of butterfly species abundance to data collected through standardized monitoring methods. Although caution is urged in extrapolating from this U.K. study of a small number of common, conspicuous insects, we found that mass-participation citizen science can simultaneously contribute to public engagement and biodiversity monitoring. Mass-participation citizen science is not an adequate replacement for standardized biodiversity monitoring but may extend and complement it (e.g., through sampling different land-use types), as well as serving to reconnect an increasingly urban human population with nature. © 2017 The Authors. Conservation Biology published

  14. 76 FR 38202 - Proposed Information Collection; Mourning Dove Call Count Survey

    Science.gov (United States)

    2011-06-29

    ...] Proposed Information Collection; Mourning Dove Call Count Survey AGENCY: Fish and Wildlife Service... we gather accurate data on various characteristics of migratory bird populations. The Mourning Dove... determine the population status of the mourning dove. If this survey were not conducted, we would not be...

  15. Finger Counting Habits in Middle Eastern and Western Individuals: An Online Survey

    NARCIS (Netherlands)

    Lindemann, O.; Alipour, A.; Fischer, M.H.

    2011-01-01

    The current study documents the presence of cultural differences in the development of finger counting strategies. About 900 Middle Eastern (i.e., Iranian) and Western (i.e., European and American) individuals reported in an online survey how they map numbers onto their fingers when counting from 1

  16. CRED REA Fish Team Stationary Point Count Surveys at Agrihan Island, 2003

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Stationary Point Counts at 4 stations at each survey site were surveyed as part of Rapid Ecological Assessments conducted at 3 sites at Agrihan in the Commonwealth...

  17. CRED REA Fish Team Stationary Point Count Surveys at Rota Island, 2003

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Stationary Point Counts at 4 stations at each survey site were surveyed as part of Rapid Ecological Assessments conducted at 6 sites at Rota Island in the...

  18. CRED REA Fish Team Stationary Point Count Surveys at Rose Atoll, 2004

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Stationary Point Counts at 4 stations at each survey site were surveyed as part of Rapid Ecological Assessments conducted at 12 sites at Rose Atoll in American Samoa...

  19. CRED REA Fish Team Stationary Point Count Surveys at Midway Atoll, 2003

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Stationary Point Counts at 4 stations at each survey site were surveyed as part of Rapid Ecological Assessments conducted at 9 sites at Midway Atoll in July and...

  20. CRED REA Fish Team Stationary Point Count Surveys at Kure Atoll, 2004

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Stationary Point Counts at 4 stations at each survey site were surveyed as part of Rapid Ecological Assessments conducted at 9 sites at Kure Atoll in October, 2004...

  1. CRED REA Fish Team Stationary Point Count Surveys at Kaui Island, 2005

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Stationary Point Counts at 4 stations at each survey site were surveyed as part of Rapid Ecological Assessments conducted at 12 sites at Kaui in July, 2005 from the...

  2. CRED REA Fish Team Stationary Point Count Surveys at Maug, Marianas Archipelago, 2007

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Stationary Point Counts at 4 stations at each survey site were surveyed as part of Rapid Ecological Assessments (REA) conducted at 9 sites around Maug in the...

  3. CRED REA Fish Team Stationary Point Count Surveys at Asuncion, Marianas Archipelago, 2005

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Stationary Point Counts at 4 stations at each survey site were surveyed as part of Rapid Ecological Assessments (REA) conducted at 3 sites around Asuncion in the...

  4. CRED REA Fish Team Stationary Point Count Surveys at Pagan, Marianas Archipelago, 2007

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Stationary Point Counts at 4 stations at each survey site were surveyed as part of Rapid Ecological Assessments (REA) conducted at 9 sites around Pagan in the...

  5. The European large area ISO survey - III. 90-mu m extragalactic source counts

    DEFF Research Database (Denmark)

    Efstathiou, A.; Oliver, S.; Rowan-Robinson, M.

    2000-01-01

    We present results and source counts at 90 mum extracted from the preliminary analysis of the European Large Area ISO Survey (ELAIS). The survey covered about 12 deg(2) of the sky in four main areas and was carried out with the ISOPHOT instrument onboard the Infrared Space Observatory (ISO...... or small groups of galaxies, suggesting that the sample may include a significant fraction of luminous infrared galaxies. The source counts extracted from a reliable subset of the detected sources are in agreement with strongly evolving models of the starburst galaxy population....

  6. CRED REA Fish Team Stationary Point Count Surveys at Ni'ihau Island, 2005

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    National Oceanic and Atmospheric Administration, Department of Commerce — Stationary Point Counts at 4 stations at each survey site were surveyed as part of Rapid Ecological Assessments conducted at 9 sites at Ni'ihau in July, 2005 from...

  7. Bird biodiversity assessments in temperate forest: the value of point count versus acoustic monitoring protocols

    Directory of Open Access Journals (Sweden)

    Brian T. Klingbeil

    2015-05-01

    Full Text Available Effective monitoring programs for biodiversity are needed to assess trends in biodiversity and evaluate the consequences of management. This is particularly true for birds and faunas that occupy interior forest and other areas of low human population density, as these are frequently under-sampled compared to other habitats. For birds, Autonomous Recording Units (ARUs have been proposed as a supplement or alternative to point counts made by human observers to enhance monitoring efforts. We employed two strategies (i.e., simultaneous-collection and same-season to compare point count and ARU methods for quantifying species richness and composition of birds in temperate interior forests. The simultaneous-collection strategy compares surveys by ARUs and point counts, with methods matched in time, location, and survey duration such that the person and machine simultaneously collect data. The same-season strategy compares surveys from ARUs and point counts conducted at the same locations throughout the breeding season, but methods differ in the number, duration, and frequency of surveys. This second strategy more closely follows the ways in which monitoring programs are likely to be implemented. Site-specific estimates of richness (but not species composition differed between methods; however, the nature of the relationship was dependent on the assessment strategy. Estimates of richness from point counts were greater than estimates from ARUs in the simultaneous-collection strategy. Woodpeckers in particular, were less frequently identified from ARUs than point counts with this strategy. Conversely, estimates of richness were lower from point counts than ARUs in the same-season strategy. Moreover, in the same-season strategy, ARUs detected the occurrence of passerines at a higher frequency than did point counts. Differences between ARU and point count methods were only detected in site-level comparisons. Importantly, both methods provide similar

  8. The utility of point count surveys to predict wildlife interactions with wind energy facilities: An example focused on golden eagles

    Science.gov (United States)

    Sur, Maitreyi; Belthoff, James R.; Bjerre, Emily R.; Millsap, Brian A.; Katzner, Todd

    2018-01-01

    Wind energy development is rapidly expanding in North America, often accompanied by requirements to survey potential facility locations for existing wildlife. Within the USA, golden eagles (Aquila chrysaetos) are among the most high-profile species of birds that are at risk from wind turbines. To minimize golden eagle fatalities in areas proposed for wind development, modified point count surveys are usually conducted to estimate use by these birds. However, it is not always clear what drives variation in the relationship between on-site point count data and actual use by eagles of a wind energy project footprint. We used existing GPS-GSM telemetry data, collected at 15 min intervals from 13 golden eagles in 2012 and 2013, to explore the relationship between point count data and eagle use of an entire project footprint. To do this, we overlaid the telemetry data on hypothetical project footprints and simulated a variety of point count sampling strategies for those footprints. We compared the time an eagle was found in the sample plots with the time it was found in the project footprint using a metric we called “error due to sampling”. Error due to sampling for individual eagles appeared to be influenced by interactions between the size of the project footprint (20, 40, 90 or 180 km2) and the sampling type (random, systematic or stratified) and was greatest on 90 km2 plots. However, use of random sampling resulted in lowest error due to sampling within intermediate sized plots. In addition sampling intensity and sampling frequency both influenced the effectiveness of point count sampling. Although our work focuses on individual eagles (not the eagle populations typically surveyed in the field), our analysis shows both the utility of simulations to identify specific influences on error and also potential improvements to sampling that consider the context-specific manner that point counts are laid out on the landscape.

  9. Comparison of Birds Detected from Roadside and Off-Road Point Counts in the Shenandoah National Park

    Science.gov (United States)

    Cherry M.E. Keller; Mark R. Fuller

    1995-01-01

    Roadside point counts are generally used for large surveys to increase the number of samples. We examined differences in species detected from roadside versus off-road (200-m and 400-m) point counts in the Shenandoah National Park. We also compared the list of species detected in the first 3 minutes to those detected in 10 minutes for potential species biases. Results...

  10. CRED REA Fish Team Stationary Point Count Surveys at Niihau, Main Hawaiian Islands, 2006

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Stationary Point Counts at 4 stations at each survey site were surveyed as part of Rapid Ecological Assessments (REA) conducted at 6 sites around Niihau in the Main...

  11. CRED REA Fish Team Stationary Point Count Surveys at Ta'u, American Samoa, 2006

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Stationary Point Counts at 4 stations at each survey site were surveyed as part of Rapid Ecological Assessments (REA) conducted at 9 sites around Ta'u in the...

  12. CRED REA Fish Team Stationary Point Count Surveys at Ofu-Olosega, American Samoa, 2006

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Stationary Point Counts at 4 stations at each survey site were surveyed as part of Rapid Ecological Assessments (REA) conducted at 12 sites around Ofu-Olosega in the...

  13. Comparison of visual-based helicopter and fixed-wing forward-looking infrared surveys for counting white-tailed deer Odocoileus virginianus

    Science.gov (United States)

    Storm, Daniel J.; Samuel, Michael D.; Van Deelen, Timothy R.; Malcolm, Karl D.; Rolley, Robert E.; Frost, Nancy A.; Bates, Donald P.; Richards, Bryan J.

    2011-01-01

    Aerial surveys using direct counts of animals are commonly used to estimate deer abundance. Forward-looking infrared (FLIR) technology is increasingly replacing traditional methods such as visual observation from helicopters. Our goals were to compare fixed-wing FLIR and visual, helicopter-based counts in terms of relative bias, influence of snow cover and cost. We surveyed five plots: four 41.4 km2 plots with free-ranging white-tailed deer Odocoileus virginianus populations in Wisconsin and a 5.3 km2 plot with a white-tailed deer population contained by a high fence in Michigan. We surveyed plots using both fixed-wing FLIR and helicopters, both with snow cover and without snow. None of the methods counted more deer than the other when snow was present. Helicopter counts were lower in the absence of snow, but lack of snow cover did not apparently affect FLIR. Group sizes of observed deer were similar regardless of survey method or season. We found that FLIR counts were generally precise (CV = 0.089) when two or three replicate surveys were conducted within a few hours. However, at the plot level, FLIR counts differed greatly between seasons, suggesting that detection rates vary over larger time scales. Fixed-wing FLIR was more costly than visual observers in helicopters and was more restrictive in terms of acceptable survey conditions. Further research is needed to understand what factors influence the detection of deer during FLIR surveys.

  14. Comparing distribution models for small samples of overdispersed counts of freshwater fish

    Science.gov (United States)

    Vaudor, Lise; Lamouroux, Nicolas; Olivier, Jean-Michel

    2011-05-01

    The study of species abundance often relies on repeated abundance counts whose number is limited by logistic or financial constraints. The distribution of abundance counts is generally right-skewed (i.e. with many zeros and few high values) and needs to be modelled for statistical inference. We used an extensive dataset involving about 100,000 fish individuals of 12 freshwater fish species collected in electrofishing points (7 m 2) during 350 field surveys made in 25 stream sites, in order to compare the performance and the generality of four distribution models of counts (Poisson, negative binomial and their zero-inflated counterparts). The negative binomial distribution was the best model (Bayesian Information Criterion) for 58% of the samples (species-survey combinations) and was suitable for a variety of life histories, habitat, and sample characteristics. The performance of the models was closely related to samples' statistics such as total abundance and variance. Finally, we illustrated the consequences of a distribution assumption by calculating confidence intervals around the mean abundance, either based on the most suitable distribution assumption or on an asymptotical, distribution-free (Student's) method. Student's method generally corresponded to narrower confidence intervals, especially when there were few (≤3) non-null counts in the samples.

  15. Requirements on the Redshift Accuracy for future Supernova and Number Count Surveys

    International Nuclear Information System (INIS)

    Huterer, Dragan; Kim, Alex; Broderick, Tamara

    2004-01-01

    We investigate the required redshift accuracy of type Ia supernova and cluster number-count surveys in order for the redshift uncertainties not to contribute appreciably to the dark energy parameter error budget. For the SNAP supernova experiment, we find that, without the assistance of ground-based measurements, individual supernova redshifts would need to be determined to about 0.002 or better, which is a challenging but feasible requirement for a low-resolution spectrograph. However, we find that accurate redshifts for z < 0.1 supernovae, obtained with ground-based experiments, are sufficient to immunize the results against even relatively large redshift errors at high z. For the future cluster number-count surveys such as the South Pole Telescope, Planck or DUET, we find that the purely statistical error in photometric redshift is less important, and that the irreducible, systematic bias in redshift drives the requirements. The redshift bias will have to be kept below 0.001-0.005 per redshift bin (which is determined by the filter set), depending on the sky coverage and details of the definition of the minimal mass of the survey. Furthermore, we find that X-ray surveys have a more stringent required redshift accuracy than Sunyaev-Zeldovich (SZ) effect surveys since they use a shorter lever arm in redshift; conversely, SZ surveys benefit from their high redshift reach only so long as some redshift information is available for distant (zgtrsim1) clusters

  16. CRED REA Fish Team Stationary Point Count Surveys at Kaula Rock, Main Hawaiian Islands, 2006

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Stationary Point Counts at 4 stations at each survey site were surveyed as part of Rapid Ecological Assessments (REA) conducted at 2 sites around Kaula Rock in the...

  17. CRED REA Fish Team Stationary Point Count Surveys at French Frigate Shoals, NW Hawaiian Islands, 2006

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Stationary Point Counts at 4 stations at each survey site were surveyed as part of Rapid Ecological Assessments (REA) conducted at 10 sites around French Frigate...

  18. Recommendations for monitoring avian populations with point counts: a case study in southeastern Brazil

    Directory of Open Access Journals (Sweden)

    Vagner Cavarzere

    2013-01-01

    Full Text Available In the northern hemisphere, bird counts have been fundamental in gathering data to understand population trends. Due to the seasonality of the northern hemisphere, counts take place during two clearly defined moments in time: the breeding season (resident birds and winter (after migration. Depending on location, Neotropical birds may breed at any time of year, may or may not migrate, and those patterns are not necessarily synchronous among species. Also in contrast to the northern hemisphere, population trends and the impact of rapid urbanization and deforestation are unknown and unmonitored. Throughout one year, we used point counts to better understand temporal patterns of bird species richness and relative abundance in the state of São Paulo, southeastern Brazil, to examine how to implement similar bird counts in tropical America. We counted birds twice each day on 10 point transects (20 points day‑1, separated by 200 m, with a 100 m limited detection radius in a semideciduous tropical forest. Both species richness and bird abundance were greater in the morning, but accumulation curves suggest that longer-duration afternoon counts would reach the same total species as in morning counts. Species richness and bird abundance did not vary seasonally and unique species were counted every month; relatively few species (20% were present in all months. Most (84% known forest species in the area were encountered. We suggest that point counts can work here as they do in the northern hemisphere. We recommend that transects include at least 20 points and that the simplest timing of bird counts would also be seasonal, using timing of migration of austral migrants (and six months later to coordinate counts. We propose that bird counts in Brazil, and elsewhere in Latin America, would provide data to help understand population trends, but would require greater effort than in temperate latitudes due to greater species richness and different dynamics of

  19. Anomalies from aerial spectrometric and total count radiometric surveys in the southeastern United States

    International Nuclear Information System (INIS)

    Lee, C.H.; Lawton, D.E.

    1978-01-01

    Aerial radiometric reconnaissance surveys are conducted because of their cost, time, and manpower savings compared to surface studies. Two types of aerial surveys are being flown in the southeastern United States: total count gamma-ray surveys for the Coastal Plains Regional Commission and the US Geological Survey, and differential gamma-ray spectrometric surveys for the US Department of Energy. Anomalous radioactivity detected during aerial surveys is related to higher concentrations of naturally occurring uranium, or to cultural activities, natural causes, or mapping errors which simulate real uranium anomalies. Each anomaly should be ground checked; however, several types of anomalies may be eliminated by evaluation of the aerial data in the office if field time is limited

  20. Environmentally Sensitive Areas Surveys Program threatened and endangered species survey: Progress report. Environmental Restoration Program

    Energy Technology Data Exchange (ETDEWEB)

    King, A.L.; Awl, D.J.; Gabrielsen, C.A.

    1994-09-01

    The Endangered Species Act (originally passed in 1973) is a Federal statute that protects both animal and plant species. The Endangered Species Act identifies species which are, without careful management, in danger of becoming extinct and species that are considered threatened. Along with the designation of threatened or endangered, the Endangered Species Act provides for the identification of appropriate habitat for these species. Since 1993, the United States Department of Energy`s (DOE) Environmental Restoration (ER) Program has supported a program to survey the Oak Ridge Reservation (ORR) for threatened and endangered species. The Environmentally Sensitive Areas Surveys Program initiated vascular plant surveys during fiscal year 1993 and vertebrate animal surveys during fiscal year 1994 to determine the baseline condition of threatened and endangered species on the ORR at the present time. Data collected during these surveys are currently aiding Comprehensive Environmental Response, Compensation, and Liability Act (CERCLA) Remedial Investigations on the ORR. They also provide data for ER and Waste Management decision documents, ensure that decisions have technical and legal defensibility, provide a baseline for ensuring compliance with principal legal requirements and will increase public confidence in DOE`s adherence to all related environmental resources rules, laws, regulations, and instructions. This report discusses the progress to date of the threatened and endangered species surveys of the ORR.

  1. Effects of Point Count Duration, Time-of-Day, and Aural Stimuli on Detectability of Migratory and Resident Bird Species in Quintana Roo, Mexico

    Science.gov (United States)

    James F. Lynch

    1995-01-01

    Effects of count duration, time-of-day, and aural stimuli were studied in a series of unlimited-radius point counts conducted during winter in Quintana Roo, Mexico. The rate at which new species were detected was approximately three times higher during the first 5 minutes of each 15- minute count than in the final 5 minutes. The number of individuals and species...

  2. Scaling local species-habitat relations to the larger landscape with a hierarchical spatial count model

    Science.gov (United States)

    Thogmartin, W.E.; Knutson, M.G.

    2007-01-01

    Much of what is known about avian species-habitat relations has been derived from studies of birds at local scales. It is entirely unclear whether the relations observed at these scales translate to the larger landscape in a predictable linear fashion. We derived habitat models and mapped predicted abundances for three forest bird species of eastern North America using bird counts, environmental variables, and hierarchical models applied at three spatial scales. Our purpose was to understand habitat associations at multiple spatial scales and create predictive abundance maps for purposes of conservation planning at a landscape scale given the constraint that the variables used in this exercise were derived from local-level studies. Our models indicated a substantial influence of landscape context for all species, many of which were counter to reported associations at finer spatial extents. We found land cover composition provided the greatest contribution to the relative explained variance in counts for all three species; spatial structure was second in importance. No single spatial scale dominated any model, indicating that these species are responding to factors at multiple spatial scales. For purposes of conservation planning, areas of predicted high abundance should be investigated to evaluate the conservation potential of the landscape in their general vicinity. In addition, the models and spatial patterns of abundance among species suggest locations where conservation actions may benefit more than one species. ?? 2006 Springer Science+Business Media B.V.

  3. Aerial Survey as a Tool to Estimate Abundance and Describe Distribution of a Carcharhinid Species, the Lemon Shark, Negaprion brevirostris

    Directory of Open Access Journals (Sweden)

    S. T. Kessel

    2013-01-01

    Full Text Available Aerial survey provides an important tool to assess the abundance of both terrestrial and marine vertebrates. To date, limited work has tested the effectiveness of this technique to estimate the abundance of smaller shark species. In Bimini, Bahamas, the lemon shark (Negaprion brevirostris shows high site fidelity to a shallow sandy lagoon, providing an ideal test species to determine the effectiveness of localised aerial survey techniques for a Carcharhinid species in shallow subtropical waters. Between September 2007 and September 2008, visual surveys were conducted from light aircraft following defined transects ranging in length between 8.8 and 4.4 km. Count results were corrected for “availability”, “perception”, and “survey intensity” to provide unbiased abundance estimates. The abundance of lemon sharks was greatest in the central area of the lagoon during high tide, with a change in abundance distribution to the east and western regions of the lagoon with low tide. Mean abundance of sharks was estimated at 49 (±8.6 individuals, and monthly abundance was significantly positively correlated with mean water temperature. The successful implementation of the aerial survey technique highlighted the potential of further employment for shark abundance assessments in shallow coastal marine environments.

  4. The cosmological analysis of X-ray cluster surveys - I. A new method for interpreting number counts

    Science.gov (United States)

    Clerc, N.; Pierre, M.; Pacaud, F.; Sadibekova, T.

    2012-07-01

    We present a new method aimed at simplifying the cosmological analysis of X-ray cluster surveys. It is based on purely instrumental observable quantities considered in a two-dimensional X-ray colour-magnitude diagram (hardness ratio versus count rate). The basic principle is that even in rather shallow surveys, substantial information on cluster redshift and temperature is present in the raw X-ray data and can be statistically extracted; in parallel, such diagrams can be readily predicted from an ab initio cosmological modelling. We illustrate the methodology for the case of a 100-deg2XMM survey having a sensitivity of ˜10-14 erg s-1 cm-2 and fit at the same time, the survey selection function, the cluster evolutionary scaling relations and the cosmology; our sole assumption - driven by the limited size of the sample considered in the case study - is that the local cluster scaling relations are known. We devote special attention to the realistic modelling of the count-rate measurement uncertainties and evaluate the potential of the method via a Fisher analysis. In the absence of individual cluster redshifts, the count rate and hardness ratio (CR-HR) method appears to be much more efficient than the traditional approach based on cluster counts (i.e. dn/dz, requiring redshifts). In the case where redshifts are available, our method performs similar to the traditional mass function (dn/dM/dz) for the purely cosmological parameters, but constrains better parameters defining the cluster scaling relations and their evolution. A further practical advantage of the CR-HR method is its simplicity: this fully top-down approach totally bypasses the tedious steps consisting in deriving cluster masses from X-ray temperature measurements.

  5. Aerial Survey Counts of Harbor Seals in Lake Iliamna, Alaska, 1984-2013 (NODC Accession 0123188)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — This dataset provides counts of harbor seals from aerial surveys over Lake Iliamna, Alaska, USA. The data have been collated from three previously published sources...

  6. A Dataset of Aerial Survey Counts of Harbor Seals in Iliamna Lake, Alaska: 1984-2013

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — This dataset provides counts of harbor seals from aerial surveys over Iliamna Lake, Alaska, USA. The data have been collated from three previously published sources...

  7. Evaluating species richness: biased ecological inference results from spatial heterogeneity in species detection probabilities

    Science.gov (United States)

    McNew, Lance B.; Handel, Colleen M.

    2015-01-01

    Accurate estimates of species richness are necessary to test predictions of ecological theory and evaluate biodiversity for conservation purposes. However, species richness is difficult to measure in the field because some species will almost always be overlooked due to their cryptic nature or the observer's failure to perceive their cues. Common measures of species richness that assume consistent observability across species are inviting because they may require only single counts of species at survey sites. Single-visit estimation methods ignore spatial and temporal variation in species detection probabilities related to survey or site conditions that may confound estimates of species richness. We used simulated and empirical data to evaluate the bias and precision of raw species counts, the limiting forms of jackknife and Chao estimators, and multi-species occupancy models when estimating species richness to evaluate whether the choice of estimator can affect inferences about the relationships between environmental conditions and community size under variable detection processes. Four simulated scenarios with realistic and variable detection processes were considered. Results of simulations indicated that (1) raw species counts were always biased low, (2) single-visit jackknife and Chao estimators were significantly biased regardless of detection process, (3) multispecies occupancy models were more precise and generally less biased than the jackknife and Chao estimators, and (4) spatial heterogeneity resulting from the effects of a site covariate on species detection probabilities had significant impacts on the inferred relationships between species richness and a spatially explicit environmental condition. For a real dataset of bird observations in northwestern Alaska, the four estimation methods produced different estimates of local species richness, which severely affected inferences about the effects of shrubs on local avian richness. Overall, our results

  8. LIFTING THE VEIL ON OBSCURED ACCRETION: ACTIVE GALACTIC NUCLEI NUMBER COUNTS AND SURVEY STRATEGIES FOR IMAGING HARD X-RAY MISSIONS

    International Nuclear Information System (INIS)

    Ballantyne, D. R.; Draper, A. R.; Madsen, K. K.; Rigby, J. R.; Treister, E.

    2011-01-01

    Finding and characterizing the population of active galactic nuclei (AGNs) that produces the X-ray background (XRB) is necessary to connect the history of accretion to observations of galaxy evolution at longer wavelengths. The year 2012 will see the deployment of the first hard X-ray imaging telescope which, through deep extragalactic surveys, will be able to measure the AGN population at the energies where the XRB peaks (∼20-30 keV). Here, we present predictions of AGN number counts in three hard X-ray bandpasses: 6-10 keV, 10-30 keV, and 30-60 keV. Separate predictions are presented for the number counts of Compton thick AGNs, the most heavily obscured active galaxies. The number counts are calculated for five different models of the XRB that differ in the assumed hard X-ray luminosity function, the evolution of the Compton thick AGNs, and the underlying AGN spectral model. The majority of the hard X-ray number counts will be Compton thin AGNs, but there is a greater than tenfold increase in the Compton thick number counts from the 6-10 keV to the 10-30 keV band. The Compton thick population shows enough variation that a hard X-ray number counts measurement will constrain the models. The computed number counts are used to consider various survey strategies for the NuSTAR mission, assuming a total exposure time of 6.2 Ms. We find that multiple surveys will allow a measurement of Compton thick evolution. The predictions presented here should be useful for all future imaging hard X-ray missions.

  9. SEDS: THE SPITZER EXTENDED DEEP SURVEY. SURVEY DESIGN, PHOTOMETRY, AND DEEP IRAC SOURCE COUNTS

    International Nuclear Information System (INIS)

    Ashby, M. L. N.; Willner, S. P.; Fazio, G. G.; Huang, J.-S.; Hernquist, L.; Hora, J. L.; Arendt, R.; Barmby, P.; Barro, G.; Faber, S.; Guhathakurta, P.; Bell, E. F.; Bouwens, R.; Cattaneo, A.; Croton, D.; Davé, R.; Dunlop, J. S.; Egami, E.; Finlator, K.; Grogin, N. A.

    2013-01-01

    The Spitzer Extended Deep Survey (SEDS) is a very deep infrared survey within five well-known extragalactic science fields: the UKIDSS Ultra-Deep Survey, the Extended Chandra Deep Field South, COSMOS, the Hubble Deep Field North, and the Extended Groth Strip. SEDS covers a total area of 1.46 deg 2 to a depth of 26 AB mag (3σ) in both of the warm Infrared Array Camera (IRAC) bands at 3.6 and 4.5 μm. Because of its uniform depth of coverage in so many widely-separated fields, SEDS is subject to roughly 25% smaller errors due to cosmic variance than a single-field survey of the same size. SEDS was designed to detect and characterize galaxies from intermediate to high redshifts (z = 2-7) with a built-in means of assessing the impact of cosmic variance on the individual fields. Because the full SEDS depth was accumulated in at least three separate visits to each field, typically with six-month intervals between visits, SEDS also furnishes an opportunity to assess the infrared variability of faint objects. This paper describes the SEDS survey design, processing, and publicly-available data products. Deep IRAC counts for the more than 300,000 galaxies detected by SEDS are consistent with models based on known galaxy populations. Discrete IRAC sources contribute 5.6 ± 1.0 and 4.4 ± 0.8 nW m –2 sr –1 at 3.6 and 4.5 μm to the diffuse cosmic infrared background (CIB). IRAC sources cannot contribute more than half of the total CIB flux estimated from DIRBE data. Barring an unexpected error in the DIRBE flux estimates, half the CIB flux must therefore come from a diffuse component.

  10. Urban birds in the Sonoran Desert: estimating population density from point counts

    Directory of Open Access Journals (Sweden)

    Karina Johnston López

    2015-01-01

    Full Text Available We conducted bird surveys in Hermosillo, Sonora using distance sampling to characterize detection functions at point-transects for native and non-native urban birds in a desert environment. From March to August 2013 we sampled 240 plots in the city and its surroundings; each plot was visited three times. Our purpose was to provide information for a rapid assessment of bird density in this region by using point counts. We identified 72 species, including six non-native species. Sixteen species had sufficient detections to accurately estimate the parameters of the detection functions. To illustrate the estimation of density from bird count data using our inferred detection functions, we estimated the density of the Eurasian Collared-Dove (Streptopelia decaocto under two different levels of urbanization: highly urbanized (90-100% of urban impact and moderately urbanized zones (39-50% of urban impact. Density of S. decaocto in the highly-urbanized and moderately-urbanized zones was 3.97±0.52 and 2.92±0.52 individuals/ha, respectively. By using our detection functions, avian ecologists can efficiently relocate time and effort that is regularly used for the estimation of detection distances, to increase the number of sites surveyed and to collect other relevant ecological information.

  11. Overestimating fish counts by non-instantaneous visual censuses: consequences for population and community descriptions.

    Directory of Open Access Journals (Sweden)

    Christine Ward-Paige

    Full Text Available BACKGROUND: Increasingly, underwater visual censuses (UVC are used to assess fish populations. Several studies have demonstrated the effectiveness of protected areas for increasing fish abundance or provided insight into the natural abundance and structure of reef fish communities in remote areas. Recently, high apex predator densities (>100,000 individuals x km(-2 and biomasses (>4 tonnes x ha(-1 have been reported for some remote islands suggesting the occurrence of inverted trophic biomass pyramids. However, few studies have critically evaluated the methods used for sampling conspicuous and highly mobile fish such as sharks. Ideally, UVC are done instantaneously, however, researchers often count animals that enter the survey area after the survey has started, thus performing non-instantaneous UVC. METHODOLOGY/PRINCIPAL FINDINGS: We developed a simulation model to evaluate counts obtained by divers deploying non-instantaneous belt-transect and stationary-point-count techniques. We assessed how fish speed and survey procedure (visibility, diver speed, survey time and dimensions affect observed fish counts. Results indicate that the bias caused by fish speed alone is huge, while survey procedures had varying effects. Because the fastest fishes tend to be the largest, the bias would have significant implications on their biomass contribution. Therefore, caution is needed when describing abundance, biomass, and community structure based on non-instantaneous UVC, especially for highly mobile species such as sharks. CONCLUSIONS/SIGNIFICANCE: Based on our results, we urge that published literature state explicitly whether instantaneous counts were made and that survey procedures be accounted for when non-instantaneous counts are used. Using published density and biomass values of communities that include sharks we explore the effect of this bias and suggest that further investigation may be needed to determine pristine shark abundances and the

  12. An Ethnobotanical Survey on Fuel Wood and Timber plant Species ...

    African Journals Online (AJOL)

    A survey was conducted to explore the fuel wood species and timber producing species of Kaghan valleys, Pakistan. Consumption pattern and impact on the forest resources were also taken into consideration. A questionnaire was used as a survey instrument to obtain desired data. For this study, 10 villages were randomly ...

  13. A study of cellular counting to determine minimum thresholds for adequacy for liquid-based cervical cytology using a survey and counting protocol.

    Science.gov (United States)

    Kitchener, Henry C; Gittins, Matthew; Desai, Mina; Smith, John H F; Cook, Gary; Roberts, Chris; Turnbull, Lesley

    2015-03-01

    Liquid-based cytology (LBC) for cervical screening would benefit from laboratory practice guidelines that define specimen adequacy for reporting of slides. The evidence base required to define cell adequacy should incorporate both ThinPrep™ (TP; Hologic, Inc., Bedford, MA, USA) and SurePath™ (SP; BD Diagnostics, Burlington, NC, USA), the two LBC systems used in the UK cervical screening programmes. The objectives of this study were to determine (1) current practice for reporting LBC in England, Wales and Scotland, (2) a reproducible method for cell counting, (3) the cellularity of slides classified as inadequate, negative or abnormal and (4) the impact of varying cellularity on the likelihood of detecting cytological abnormalities. The study involved four separate arms to pursue each of the four objectives. (1) A questionnaire survey of laboratories was conducted. (2) A standard counting protocol was developed and used by three experienced cytopathologists to determine a reliable and reproducible cell counting method. (3) Slide sets which included a range of cytological abnormalities were each sent to three laboratories for cell counting to study the correlation between cell counts and reported cytological outcomes. (4) Dilution of LBC samples by fluid only (unmixed) or by dilution with a sample containing normal cells (mixed) was performed to study the impact on reporting of reducing either the total cell count or the relative proportion of abnormal to normal cells. The study was conducted within the cervical screening programmes in England, Wales and Scotland, using routinely obtained cervical screening samples, and in 56 participating NHS cervical cytology laboratories. The study involved only routinely obtained cervical screening samples. There was no clinical intervention. The main outcome measures were (1) reliability of counting method, (2) correlation of reported cytology grades with cellularity and (3) levels of detection of abnormal cells in

  14. Optimal surveillance strategy for invasive species management when surveys stop after detection.

    Science.gov (United States)

    Guillera-Arroita, Gurutzeta; Hauser, Cindy E; McCarthy, Michael A

    2014-05-01

    Invasive species are a cause for concern in natural and economic systems and require both monitoring and management. There is a trade-off between the amount of resources spent on surveying for the species and conducting early management of occupied sites, and the resources that are ultimately spent in delayed management at sites where the species was present but undetected. Previous work addressed this optimal resource allocation problem assuming that surveys continue despite detection until the initially planned survey effort is consumed. However, a more realistic scenario is often that surveys stop after detection (i.e., follow a "removal" sampling design) and then management begins. Such an approach will indicate a different optimal survey design and can be expected to be more efficient. We analyze this case and compare the expected efficiency of invasive species management programs under both survey methods. We also evaluate the impact of mis-specifying the type of sampling approach during the program design phase. We derive analytical expressions that optimize resource allocation between monitoring and management in surveillance programs when surveys stop after detection. We do this under a scenario of unconstrained resources and scenarios where survey budget is constrained. The efficiency of surveillance programs is greater if a "removal survey" design is used, with larger gains obtained when savings from early detection are high, occupancy is high, and survey costs are not much lower than early management costs at a site. Designing a surveillance program disregarding that surveys stop after detection can result in an efficiency loss. Our results help guide the design of future surveillance programs for invasive species. Addressing program design within a decision-theoretic framework can lead to a better use of available resources. We show how species prevalence, its detectability, and the benefits derived from early detection can be considered.

  15. Species undersampling in tropical bat surveys: effects on emerging biodiversity patterns.

    Science.gov (United States)

    Meyer, Christoph F J; Aguiar, Ludmilla M S; Aguirre, Luis F; Baumgarten, Julio; Clarke, Frank M; Cosson, Jean-François; Estrada Villegas, Sergio; Fahr, Jakob; Faria, Deborah; Furey, Neil; Henry, Mickaël; Jenkins, Richard K B; Kunz, Thomas H; Cristina MacSwiney González, M; Moya, Isabel; Pons, Jean-Marc; Racey, Paul A; Rex, Katja; Sampaio, Erica M; Stoner, Kathryn E; Voigt, Christian C; von Staden, Dietrich; Weise, Christa D; Kalko, Elisabeth K V

    2015-01-01

    Undersampling is commonplace in biodiversity surveys of species-rich tropical assemblages in which rare taxa abound, with possible repercussions for our ability to implement surveys and monitoring programmes in a cost-effective way. We investigated the consequences of information loss due to species undersampling (missing subsets of species from the full species pool) in tropical bat surveys for the emerging patterns of species richness (SR) and compositional variation across sites. For 27 bat assemblage data sets from across the tropics, we used correlations between original data sets and subsets with different numbers of species deleted either at random, or according to their rarity in the assemblage, to assess to what extent patterns in SR and composition in data subsets are congruent with those in the initial data set. We then examined to what degree high sample representativeness (r ≥ 0·8) was influenced by biogeographic region, sampling method, sampling effort or structural assemblage characteristics. For SR, correlations between random subsets and original data sets were strong (r ≥ 0·8) with moderate (ca. 20%) species loss. Bias associated with information loss was greater for species composition; on average ca. 90% of species in random subsets had to be retained to adequately capture among-site variation. For nonrandom subsets, removing only the rarest species (on average c. 10% of the full data set) yielded strong correlations (r > 0·95) for both SR and composition. Eliminating greater proportions of rare species resulted in weaker correlations and large variation in the magnitude of observed correlations among data sets. Species subsets that comprised ca. 85% of the original set can be considered reliable surrogates, capable of adequately revealing patterns of SR and temporal or spatial turnover in many tropical bat assemblages. Our analyses thus demonstrate the potential as well as limitations for reducing survey effort and streamlining

  16. Point Count Length and Detection of Forest Neotropical Migrant Birds

    Science.gov (United States)

    Deanna K. Dawson; David R. Smith; Chandler S. Robbins

    1995-01-01

    Comparisons of bird abundances among years or among habitats assume that the rates at which birds are detected and counted are constant within species. We use point count data collected in forests of the Mid-Atlantic states to estimate detection probabilities for Neotropical migrant bird species as a function of count length. For some species, significant differences...

  17. Temporal aggregation of migration counts can improve accuracy and precision of trends

    Directory of Open Access Journals (Sweden)

    Tara L. Crewe

    2016-12-01

    Full Text Available Temporal replicate counts are often aggregated to improve model fit by reducing zero-inflation and count variability, and in the case of migration counts collected hourly throughout a migration, allows one to ignore nonindependence. However, aggregation can represent a loss of potentially useful information on the hourly or seasonal distribution of counts, which might impact our ability to estimate reliable trends. We simulated 20-year hourly raptor migration count datasets with known rate of change to test the effect of aggregating hourly counts to daily or annual totals on our ability to recover known trend. We simulated data for three types of species, to test whether results varied with species abundance or migration strategy: a commonly detected species, e.g., Northern Harrier, Circus cyaneus; a rarely detected species, e.g., Peregrine Falcon, Falco peregrinus; and a species typically counted in large aggregations with overdispersed counts, e.g., Broad-winged Hawk, Buteo platypterus. We compared accuracy and precision of estimated trends across species and count types (hourly/daily/annual using hierarchical models that assumed a Poisson, negative binomial (NB or zero-inflated negative binomial (ZINB count distribution. We found little benefit of modeling zero-inflation or of modeling the hourly distribution of migration counts. For the rare species, trends analyzed using daily totals and an NB or ZINB data distribution resulted in a higher probability of detecting an accurate and precise trend. In contrast, trends of the common and overdispersed species benefited from aggregation to annual totals, and for the overdispersed species in particular, trends estimating using annual totals were more precise, and resulted in lower probabilities of estimating a trend (1 in the wrong direction, or (2 with credible intervals that excluded the true trend, as compared with hourly and daily counts.

  18. Tower counts

    Science.gov (United States)

    Woody, Carol Ann; Johnson, D.H.; Shrier, Brianna M.; O'Neal, Jennifer S.; Knutzen, John A.; Augerot, Xanthippe; O'Neal, Thomas A.; Pearsons, Todd N.

    2007-01-01

    Counting towers provide an accurate, low-cost, low-maintenance, low-technology, and easily mobilized escapement estimation program compared to other methods (e.g., weirs, hydroacoustics, mark-recapture, and aerial surveys) (Thompson 1962; Siebel 1967; Cousens et al. 1982; Symons and Waldichuk 1984; Anderson 2000; Alaska Department of Fish and Game 2003). Counting tower data has been found to be consistent with that of digital video counts (Edwards 2005). Counting towers do not interfere with natural fish migration patterns, nor are fish handled or stressed; however, their use is generally limited to clear rivers that meet specific site selection criteria. The data provided by counting tower sampling allow fishery managers to determine reproductive population size, estimate total return (escapement + catch) and its uncertainty, evaluate population productivity and trends, set harvest rates, determine spawning escapement goals, and forecast future returns (Alaska Department of Fish and Game 1974-2000 and 1975-2004). The number of spawning fish is determined by subtracting subsistence, sport-caught fish, and prespawn mortality from the total estimated escapement. The methods outlined in this protocol for tower counts can be used to provide reasonable estimates ( plus or minus 6%-10%) of reproductive salmon population size and run timing in clear rivers. 

  19. When is a species declining? Optimizing survey effort to detect population changes in reptiles.

    Directory of Open Access Journals (Sweden)

    David Sewell

    Full Text Available Biodiversity monitoring programs need to be designed so that population changes can be detected reliably. This can be problematical for species that are cryptic and have imperfect detection. We used occupancy modeling and power analysis to optimize the survey design for reptile monitoring programs in the UK. Surveys were carried out six times a year in 2009-2010 at multiple sites. Four out of the six species--grass snake, adder, common lizard, slow-worm -were encountered during every survey from March-September. The exceptions were the two rarest species--sand lizard and smooth snake--which were not encountered in July 2009 and March 2010 respectively. The most frequently encountered and most easily detected species was the slow-worm. For the four widespread reptile species in the UK, three to four survey visits that used a combination of directed transect walks and artificial cover objects resulted in 95% certainty that a species would be detected if present. Using artificial cover objects was an effective detection method for most species, considerably increased the detection rate of some, and reduced misidentifications. To achieve an 85% power to detect a decline in any of the four widespread species when the true decline is 15%, three surveys at a total of 886 sampling sites, or four surveys at a total of 688 sites would be required. The sampling effort needed reduces to 212 sites surveyed three times, or 167 sites surveyed four times, if the target is to detect a true decline of 30% with the same power. The results obtained can be used to refine reptile survey protocols in the UK and elsewhere. On a wider scale, the occupancy study design approach can be used to optimize survey effort and help set targets for conservation outcomes for regional or national biodiversity assessments.

  20. Estimation and correction of visibility bias in aerial surveys of wintering ducks

    Science.gov (United States)

    Pearse, A.T.; Gerard, P.D.; Dinsmore, S.J.; Kaminski, R.M.; Reinecke, K.J.

    2008-01-01

    Incomplete detection of all individuals leading to negative bias in abundance estimates is a pervasive source of error in aerial surveys of wildlife, and correcting that bias is a critical step in improving surveys. We conducted experiments using duck decoys as surrogates for live ducks to estimate bias associated with surveys of wintering ducks in Mississippi, USA. We found detection of decoy groups was related to wetland cover type (open vs. forested), group size (1?100 decoys), and interaction of these variables. Observers who detected decoy groups reported counts that averaged 78% of the decoys actually present, and this counting bias was not influenced by either covariate cited above. We integrated this sightability model into estimation procedures for our sample surveys with weight adjustments derived from probabilities of group detection (estimated by logistic regression) and count bias. To estimate variances of abundance estimates, we used bootstrap resampling of transects included in aerial surveys and data from the bias-correction experiment. When we implemented bias correction procedures on data from a field survey conducted in January 2004, we found bias-corrected estimates of abundance increased 36?42%, and associated standard errors increased 38?55%, depending on species or group estimated. We deemed our method successful for integrating correction of visibility bias in an existing sample survey design for wintering ducks in Mississippi, and we believe this procedure could be implemented in a variety of sampling problems for other locations and species.

  1. Can reliable sage-grouse lek counts be obtained using aerial infrared technology

    Science.gov (United States)

    Gillette, Gifford L.; Coates, Peter S.; Petersen, Steven; Romero, John P.

    2013-01-01

    More effective methods for counting greater sage-grouse (Centrocercus urophasianus) are needed to better assess population trends through enumeration or location of new leks. We describe an aerial infrared technique for conducting sage-grouse lek counts and compare this method with conventional ground-based lek count methods. During the breeding period in 2010 and 2011, we surveyed leks from fixed-winged aircraft using cryogenically cooled mid-wave infrared cameras and surveyed the same leks on the same day from the ground following a standard lek count protocol. We did not detect significant differences in lek counts between surveying techniques. These findings suggest that using a cryogenically cooled mid-wave infrared camera from an aerial platform to conduct lek surveys is an effective alternative technique to conventional ground-based methods, but further research is needed. We discuss multiple advantages to aerial infrared surveys, including counting in remote areas, representing greater spatial variation, and increasing the number of counted leks per season. Aerial infrared lek counts may be a valuable wildlife management tool that releases time and resources for other conservation efforts. Opportunities exist for wildlife professionals to refine and apply aerial infrared techniques to wildlife monitoring programs because of the increasing reliability and affordability of this technology.

  2. Counts-in-Cylinders in the Sloan Digital Sky Survey with Comparisons to N-Body

    Energy Technology Data Exchange (ETDEWEB)

    Berrier, Heather D.; Barton, Elizabeth J.; /UC, Irvine; Berrier, Joel C.; /Arkansas U.; Bullock, James S.; /UC, Irvine; Zentner, Andrew R.; /Pittsburgh U.; Wechsler, Risa H. /KIPAC, Menlo Park /SLAC

    2010-12-16

    Environmental statistics provide a necessary means of comparing the properties of galaxies in different environments and a vital test of models of galaxy formation within the prevailing, hierarchical cosmological model. We explore counts-in-cylinders, a common statistic defined as the number of companions of a particular galaxy found within a given projected radius and redshift interval. Galaxy distributions with the same two-point correlation functions do not necessarily have the same companion count distributions. We use this statistic to examine the environments of galaxies in the Sloan Digital Sky Survey, Data Release 4. We also make preliminary comparisons to four models for the spatial distributions of galaxies, based on N-body simulations, and data from SDSS DR4 to study the utility of the counts-in-cylinders statistic. There is a very large scatter between the number of companions a galaxy has and the mass of its parent dark matter halo and the halo occupation, limiting the utility of this statistic for certain kinds of environmental studies. We also show that prevalent, empirical models of galaxy clustering that match observed two- and three-point clustering statistics well fail to reproduce some aspects of the observed distribution of counts-in-cylinders on 1, 3 and 6-h{sup -1}Mpc scales. All models that we explore underpredict the fraction of galaxies with few or no companions in 3 and 6-h{sup -1} Mpc cylinders. Roughly 7% of galaxies in the real universe are significantly more isolated within a 6 h{sup -1} Mpc cylinder than the galaxies in any of the models we use. Simple, phenomenological models that map galaxies to dark matter halos fail to reproduce high-order clustering statistics in low-density environments.

  3. An Ethnobotanical Survey on Fuel Wood and Timber plant Species ...

    African Journals Online (AJOL)

    Yomi

    2011-12-19

    Dec 19, 2011 ... 3Department of Botany, Post Graduate College Abbottabad, Pakistan. Accepted 17 March, 2011. A survey was conducted to explore the fuel wood species and timber producing species of Kaghan valleys, Pakistan. Consumption pattern and impact on the forest resources were also taken into consideration.

  4. Off-road sampling reveals a different grassland bird community than roadside sampling: implications for survey design and estimates to guide conservation

    Directory of Open Access Journals (Sweden)

    Troy I. Wellicome

    2014-06-01

    Full Text Available Grassland bird species continue to decline steeply across North America. Road-based surveys such as the North American Breeding Bird Survey (BBS are often used to estimate trends and population sizes and to build species distribution models for grassland birds, although roadside survey counts may introduce bias in estimates because of differences in habitats along roadsides and in off-road surveys. We tested for differences in land cover composition and in the avian community on 21 roadside-based survey routes and in an equal number of adjacent off-road walking routes in the grasslands of southern Alberta, Canada. Off-road routes (n = 225 point counts had more native grassland and short shrubs and less fallow land and road area than the roadside routes (n = 225 point counts. Consequently, 17 of the 39 bird species differed between the two route types in frequency of occurrence and relative abundance, measured using an indicator species analysis. Six species, including five obligate grassland species, were more prevalent at off-road sites; they included four species listed under the Canadian federal Species At Risk Act or listed by the Committee on the Status of Endangered Wildlife in Canada: Sprague's Pipit (Anthus spragueii, Baird's Sparrow (Ammodramus bairdii, the Chestnut-collared Longspur (Calcarius ornatus, and McCown's Longspur (Rhynchophanes mccownii. The six species were as much as four times more abundant on off-road sites. Species more prevalent along roadside routes included common species and those typical of farmland and other human-modified habitats, e.g., the European Starling (Sturnus vulgaris, the Black-billed Magpie (Pica hudsonia, and the House Sparrow (Passer domesticus. Differences in avian community composition between roadside and off-road surveys suggest that the use of BBS data when generating population estimates or distribution models may overestimate certain common species and underestimate others of conservation

  5. Generalized estimators of avian abundance from count survey data

    Directory of Open Access Journals (Sweden)

    Royle, J. A.

    2004-01-01

    Full Text Available I consider modeling avian abundance from spatially referenced bird count data collected according to common protocols such as capture-recapture, multiple observer, removal sampling and simple point counts. Small sample sizes and large numbers of parameters have motivated many analyses that disregard the spatial indexing of the data, and thus do not provide an adequate treatment of spatial structure. I describe a general framework for modeling spatially replicated data that regards local abundance as a random process, motivated by the view that the set of spatially referenced local populations (at the sample locations constitute a metapopulation. Under this view, attention can be focused on developing a model for the variation in local abundance independent of the sampling protocol being considered. The metapopulation model structure, when combined with the data generating model, define a simple hierarchical model that can be analyzed using conventional methods. The proposed modeling framework is completely general in the sense that broad classes of metapopulation models may be considered, site level covariates on detection and abundance may be considered, and estimates of abundance and related quantities may be obtained for sample locations, groups of locations, unsampled locations. Two brief examples are given, the first involving simple point counts, and the second based on temporary removal counts. Extension of these models to open systems is briefly discussed.

  6. Isolation and evaluation of Candida species and their association with CD4+ T cells counts in HIV patients with diarrhoea.

    Science.gov (United States)

    Awoyeni, Ayobami; Olaniran, Olarinde; Odetoyin, Babatunde; Hassan-Olajokun, Rachel; Olopade, Bolatito; Afolayan, David; Adekunle, Oluwakayode

    2017-06-01

    Gastrointestinal infection is one of the most common infections among HIV patients. Candida spp have been implicated in the aetiology of chronic diarrhoea in HIV patients, but little is known about this in Nigeria. We determined the prevalence of faecal candidiasis in HIV patients in relation to diarrhoea, CD4 counts, and other socio-demographic factors and the spectrum of Candida isolates involved. One hundred and fifty four HIV patients were investigated. Candida species were identified by standard techniques. Socio-demographic and clinical information was obtained from the patients using a structured questionnaire. The CD4 count was estimated using a single platform flow cytometer. Candida overgrowth was detected in 61 (39.5%) HIV patients, and diarrhoea was associated with candidiasis in the subjects (P=0.001). Candidiasis was commonly detected among subjects in the 29-39 years' age group. A CD4 count below 200 cells/mm 2 (62.3%) was a risk factor for acquiring candidiasis among HIV patients (P=0.001). Candida albicans (65.6%) was the most frequently recovered species followed by Candida krusei (16.4%) and Candida tropicalis (14.8%). Candidiasis is an important opportunistic infection in HIV-patients in Ile-Ife. There is need for regular checks for opportunistic infections, including candidiasis in HIV patients to monitor disease progression and prevent subsequent complications.

  7. SWFSC/MMTD: Ecosystem Survey of Delphinus Species (ESDS) 2009

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — This survey focused on two species of common dolphin: the short-beaked common dolphin, Delphinus delphis, and the long-beaked common dolphin, Delphinus capensis ,...

  8. Threatened and Endangered Species Survey for Patrick Air Force Base, Florida

    Science.gov (United States)

    Oddy, Donna M.; Stolen, Eric D.; Schmalzer, Paul A.; Larson, Vickie L.; Hall, Patrice; Hensley, Melissa A.

    1997-01-01

    A review of previous environmental work conducted at Patrick Air Force Base (PAFB) indicated that several threatened, endangered, or species of special concern occurred or had the potential to occur there. This study was implemented to collect more information on protected species at PAFB. A map of landcover types was prepared for PAFB using aerial photography, groundtruthing, and a geographic information system (GIS). Herbaceous vegetation was the most common vegetation type. The second most abundant vegetation type was disturbed shrubs/exotics. The beach and associated dune vegetation comprised 3.2% of the land area, but was the most extensive natural community within PAFB. A few isolated mangrove communities exist along the Banana River. Seventy-seven species of vascular plants occurred on the dunes, including four species listed by state agencies: spider lily (Hymenocallis latifolia), prickly pear cactus (Opuntia stricta), beach star (Remirea maritima), and inkberry (Scaevola plumien). Surveys of other habitats revealed eighty-four species of vascular plants including two state-listed species: spider lily and prickly pear cactus. Many of these areas are dominated by invasive, exotic species, particularly Brazilian pepper (Schinus terebinthifolius) and Australian pine (Casuarina equisetifolia), and native species of open or disturbed sites such as camphorweed (Heterotheca subaxillaris) and beardgrass (Andropogon spp.). Due to the isolation of PAFB from other natural areas, most exotic plant populations on the base are not an immediate threat to intact native plant communities. Dune habitat was surveyed for the southeastem beach mouse (Peromyscus polionotus niveiventris) by quarterly trapping along eight 100 m transects. No beach mice were found. The limited extent of dune habitat, its fragmented condition, and the isolation of PAFB from extant populations of the beach mouse probably accounts for its absence. Surveys of birds on PAFB found an avifauna

  9. COUNTS-IN-CYLINDERS IN THE SLOAN DIGITAL SKY SURVEY WITH COMPARISONS TO N-BODY SIMULATIONS

    International Nuclear Information System (INIS)

    Berrier, Heather D.; Barton, Elizabeth J.; Bullock, James S.; Berrier, Joel C.; Zentner, Andrew R.; Wechsler, Risa H.

    2011-01-01

    Environmental statistics provide a necessary means of comparing the properties of galaxies in different environments, and a vital test of models of galaxy formation within the prevailing hierarchical cosmological model. We explore counts-in-cylinders, a common statistic defined as the number of companions of a particular galaxy found within a given projected radius and redshift interval. Galaxy distributions with the same two-point correlation functions do not necessarily have the same companion count distributions. We use this statistic to examine the environments of galaxies in the Sloan Digital Sky Survey Data Release 4 (SDSS DR4). We also make preliminary comparisons to four models for the spatial distributions of galaxies, based on N-body simulations and data from SDSS DR4, to study the utility of the counts-in-cylinders statistic. There is a very large scatter between the number of companions a galaxy has and the mass of its parent dark matter halo and the halo occupation, limiting the utility of this statistic for certain kinds of environmental studies. We also show that prevalent empirical models of galaxy clustering, that match observed two- and three-point clustering statistics well, fail to reproduce some aspects of the observed distribution of counts-in-cylinders on 1, 3, and 6 h -1 Mpc scales. All models that we explore underpredict the fraction of galaxies with few or no companions in 3 and 6 h -1 Mpc cylinders. Roughly 7% of galaxies in the real universe are significantly more isolated within a 6 h -1 Mpc cylinder than the galaxies in any of the models we use. Simple phenomenological models that map galaxies to dark matter halos fail to reproduce high-order clustering statistics in low-density environments.

  10. Assessing landscape constraints on species abundance: Does the neighborhood limit species response to local habitat conservation programs?

    Science.gov (United States)

    Jorgensen, Christopher F.; Powell, Larkin A.; Lusk, Jeffrey J.; Bishop, Andrew A.; Fontaine, Joseph J.

    2014-01-01

    Landscapes in agricultural systems continue to undergo significant change, and the loss of biodiversity is an ever-increasing threat. Although habitat restoration is beneficial, management actions do not always result in the desired outcome. Managers must understand why management actions fail; yet, past studies have focused on assessing habitat attributes at a single spatial scale, and often fail to consider the importance of ecological mechanisms that act across spatial scales. We located survey sites across southern Nebraska, USA and conducted point counts to estimate Ring-necked Pheasant abundance, an economically important species to the region, while simultaneously quantifying landscape effects using a geographic information system. To identify suitable areas for allocating limited management resources, we assessed land cover relationships to our counts using a Bayesian binomial-Poisson hierarchical model to construct predictive Species Distribution Models of relative abundance. Our results indicated that landscape scale land cover variables severely constrained or, alternatively, facilitated the positive effects of local land management for Ring-necked Pheasants.

  11. Evaluating autonomous acoustic surveying techniques for rails in tidal marshes

    Science.gov (United States)

    Stiffler, Lydia L.; Anderson, James T.; Katzner, Todd

    2018-01-01

    There is a growing interest toward the use of autonomous recording units (ARUs) for acoustic surveying of secretive marsh bird populations. However, there is little information on how ARUs compare to human surveyors or how best to use ARU data that can be collected continuously throughout the day. We used ARUs to conduct 2 acoustic surveys for king (Rallus elegans) and clapper rails (R. crepitans) within a tidal marsh complex along the Pamunkey River, Virginia, USA, during May–July 2015. To determine the effectiveness of an ARU in replacing human personnel, we compared results of callback point‐count surveys with concurrent acoustic recordings and calculated estimates of detection probability for both rail species combined. The success of ARUs at detecting rails that human observers recorded decreased with distance (P ≤ 0.001), such that at 75 m, only 34.0% of human‐detected rails were detected by the ARU. To determine a subsampling scheme for continuous ARU data that allows for effective surveying of presence and call rates of rails, we used ARUs to conduct 15 continuous 48‐hr passive surveys, generating 720 hr of recordings. We established 5 subsampling periods of 5, 10, 15, 30, and 45 min to evaluate ARU‐based presence and vocalization detections of rails compared with each of the full 60‐min sampling of ARU‐based detection of rails. All subsampling periods resulted in different (P ≤ 0.001) detection rates and unstandardized vocalization rates compared with the hourly sampling period. However, standardized vocalization counts from the 30‐min subsampling period were not different from vocalization counts of the full hourly sampling period. When surveying rail species in estuarine environments, species‐, habitat‐, and ARU‐specific limitations to ARU sampling should be considered when making inferences about abundances and distributions from ARU data. 

  12. The first 50 years of the North American Breeding Bird Survey

    Science.gov (United States)

    Sauer, John; Ziolkowski, David; Pardieck, Keith L.; Smith, Adam C.; Hudson, Marie-Anne R.; Rodriguez, Vicente; Berlanga, Humberto; Niven, Daniel; Link, William

    2017-01-01

    The vision of Chandler (Chan) S. Robbins for a continental-scale omnibus survey of breeding birds led to the development of the North American Breeding Bird Survey (BBS). Chan was uniquely suited to develop the BBS. His position as a government scientist had given him experience with designing and implementing continental-scale surveys, his research background made him an effective advocate of the need for a survey to monitor pesticide effects on birds, and his prominence in the birding community gave him connections to infrastructure—a network of qualified volunteer birders who could conduct roadside surveys with standardized point counts. Having started in the eastern United States and the Atlantic provinces of Canada in 1966, the BBS now provides population change information for ∼546 species in the continental United States and Canada, and recently initiated routes in Mexico promise to greatly expand the areas and species covered by the survey. Although survey protocols have remained unchanged for 50 years, the BBS remains relevant in a changing world. Several papers that follow in this Special Section of The Condor: Ornithological Advances review how the BBS has been applied to conservation assessments, especially in combination with other large-scale survey data. A critical feature of the BBS program is an active research program into field and analytical methods to enhance the quality of the count data and to control for factors that influence detectability. Papers in the Special Section also present advances in BBS analyses that improve the utility of this expanding and sometimes controversial survey. In this Perspective, we introduce the Special Section by reviewing the history of the BBS, describing current analyses, and providing summary trend results for all species, highlighting 3 groups of conservation concern: grassland-breeding birds, aridland-breeding birds, and aerial insectivorous birds.

  13. Make My Trip Count 2015

    Data.gov (United States)

    Allegheny County / City of Pittsburgh / Western PA Regional Data Center — The Make My Trip Count (MMTC) commuter survey, conducted in September and October 2015 by GBA, the Pittsburgh 2030 District, and 10 other regional transportation...

  14. A survey of entomopathogenic nematode species in continental Portugal.

    Science.gov (United States)

    Valadas, V; Laranjo, M; Mota, M; Oliveira, S

    2014-09-01

    Entomopathogenic nematodes (EPN) are lethal parasites of insects, used as biocontrol agents. The objectives of this work were to survey the presence of EPN in continental Portugal and to characterize the different species. Of the 791 soil samples collected throughout continental Portugal, 53 were positive for EPN. Steinernema feltiae and Heterorhabditis bacteriophora were the two most abundant species. Analysis of EPN geographical distribution revealed an association between nematode species and vegetation type. Heterorhabditis bacteriophora was mostly found in the Alentejo region while S. feltiae was present in land occupied by agriculture with natural vegetation, broadleaved forest, mixed forest and transitional woodland-shrub, agro-forestry areas, complex cultivated patterns and non-irrigated arable land. Although no clear association was found between species and soil type, S. feltiae was typically recovered from cambisols and H. bacteriophora was more abundant in lithosols. Sequencing of the internal transcribed spacer (ITS) region indicated that S. feltiae was the most abundant species, followed by H. bacteriophora. Steinernema intermedium and S. kraussei were each isolated from one site and Steinernema sp. from two sites. Phylogenetic analyses of ITS, D2D3 expansion region of the 28S rRNA gene, as well as mitochondrial cytochrome c oxidase subunit I (COXI) and cytochrome b (cytb) genes, was performed to evaluate the genetic diversity of S. feltiae and H. bacteriophora. No significant genetic diversity was found among H. bacteriophora isolates. However, COXI seems to be the best marker to study genetic diversity of S. feltiae. This survey contributes to the understanding of EPN distribution in Europe.

  15. Non-use Economic Values for Little-Known Aquatic Species at Risk: Comparing Choice Experiment Results from Surveys Focused on Species, Guilds, and Ecosystems

    Science.gov (United States)

    Rudd, Murray A.; Andres, Sheri; Kilfoil, Mary

    2016-09-01

    Accounting for non-market economic values of biological diversity is important to fully assess the benefits of environmental policies and regulations. This study used three choice experiments (species-, guild-, and ecosystem-based surveys) in parallel to quantify non-use values for little-known aquatic species at risk in southern Ontario. Mean willingness-to-pay (WTP) ranged from 9.45 to 21.41 per listing status increment under Canada's Species at Risk Act for both named and unnamed little-known species. Given the broad range of valuable ecosystem services likely to accrue to residents from substantial increases in water quality and the rehabilitation of coastal wetlands, the difference in WTP between species- and ecosystem-based surveys seemed implausibly small. It appeared that naming species—the `iconization' of species in two of the three surveys—had an important effect on WTP. The results suggest that reasonable annual household-level WTP values for little-known aquatic species may be 10 to 25 per species or 10 to 20 per listing status increment. The results highlighted the utility of using parallel surveys to triangulate on non-use economic values for little-known species at risk.

  16. A comparison of point counts with a new acoustic sampling method ...

    African Journals Online (AJOL)

    We showed that the estimates of species richness, abundance and community composition based on point counts and post-hoc laboratory listening to acoustic samples are very similar, especially for a distance limited up to 50 m. Species that were frequently missed during both point counts and listening to acoustic samples ...

  17. Mobile acoustic transects miss rare bat species: implications of survey method and spatio-temporal sampling for monitoring bats

    Directory of Open Access Journals (Sweden)

    Elizabeth C. Braun de Torrez

    2017-11-01

    Full Text Available Due to increasing threats facing bats, long-term monitoring protocols are needed to inform conservation strategies. Effective monitoring should be easily repeatable while capturing spatio-temporal variation. Mobile acoustic driving transect surveys (‘mobile transects’ have been touted as a robust, cost-effective method to monitor bats; however, it is not clear how well mobile transects represent dynamic bat communities, especially when used as the sole survey approach. To assist biologists who must select a single survey method due to resource limitations, we assessed the effectiveness of three acoustic survey methods at detecting species richness in a vast protected area (Everglades National Park: (1 mobile transects, (2 stationary surveys that were strategically located by sources of open water and (3 stationary surveys that were replicated spatially across the landscape. We found that mobile transects underrepresented bat species richness compared to stationary surveys across all major vegetation communities and in two distinct seasons (dry/cool and wet/warm. Most critically, mobile transects failed to detect three rare bat species, one of which is federally endangered. Spatially replicated stationary surveys did not estimate higher species richness than strategically located stationary surveys, but increased the rate at which species were detected in one vegetation community. The survey strategy that detected maximum species richness and the highest mean nightly species richness with minimal effort was a strategically located stationary detector in each of two major vegetation communities during the wet/warm season.

  18. Mobile acoustic transects miss rare bat species: implications of survey method and spatio-temporal sampling for monitoring bats.

    Science.gov (United States)

    Braun de Torrez, Elizabeth C; Wallrichs, Megan A; Ober, Holly K; McCleery, Robert A

    2017-01-01

    Due to increasing threats facing bats, long-term monitoring protocols are needed to inform conservation strategies. Effective monitoring should be easily repeatable while capturing spatio-temporal variation. Mobile acoustic driving transect surveys ('mobile transects') have been touted as a robust, cost-effective method to monitor bats; however, it is not clear how well mobile transects represent dynamic bat communities, especially when used as the sole survey approach. To assist biologists who must select a single survey method due to resource limitations, we assessed the effectiveness of three acoustic survey methods at detecting species richness in a vast protected area (Everglades National Park): (1) mobile transects, (2) stationary surveys that were strategically located by sources of open water and (3) stationary surveys that were replicated spatially across the landscape. We found that mobile transects underrepresented bat species richness compared to stationary surveys across all major vegetation communities and in two distinct seasons (dry/cool and wet/warm). Most critically, mobile transects failed to detect three rare bat species, one of which is federally endangered. Spatially replicated stationary surveys did not estimate higher species richness than strategically located stationary surveys, but increased the rate at which species were detected in one vegetation community. The survey strategy that detected maximum species richness and the highest mean nightly species richness with minimal effort was a strategically located stationary detector in each of two major vegetation communities during the wet/warm season.

  19. Surveying wolves without snow: a critical review of the methods used in Spain

    OpenAIRE

    Blanco, Juan Carlos; Cortés, Yolanda

    2011-01-01

    Wolves (Canis lupus) are difficult to survey, and in most countries, snow is used for identifying the species, counting individuals, recording movements and determining social position. However, in the Iberian peninsula and other southern regions of its gobal range, snow is very scarce in winter, so wolves must be surveyed without snow. In Spain and Portugal, wolves are surveyed through estimating number of wolf packs in summer by means of locating litters of pups when they are at rendezvous ...

  20. A Preliminary Survey of Species Composition of Termites (Insecta: Isoptera) in Samunsam Wildlife Sanctuary, Sarawak.

    Science.gov (United States)

    Jamil, Norsyarizan; Ismail, Wan Nurainie Wan; Abidin, Siti Shamimi; Amaran, Mazdan Ali; Hazali, Ratnawati

    2017-07-01

    A survey on termite species composition was conducted in Samunsam Wildlife Sanctuary, Sarawak in February 2015. Overall 19 species of termite belonging to 13 genera and 8 subfamilies was found in the sanctuary. It was recorded the subfamily of Termitinae had the highest number of species (6 species, equal to 31.58% of total species), followed by Nasutermitinae (3 species, 15.79%), Macrotermitinae, Amitermitinae, Rhinotermitinae, Coptotermitinae, (2 species, 10.53% respectively), and Heterotermitinae, Termitogetoninae (1 species, 5.26% respectively). Since this rapid survey is the first termite assemblage representation in Samunsam Wildlife Sanctuary, the preliminary result may serve as the baseline data for termite composition in the area. Therefore, a whole coverage for the area within this sanctuary would definitely increase the number of termite species found in the sanctuary.

  1. Monitoring strategy for eight amphibian species in French Guiana, South America.

    Directory of Open Access Journals (Sweden)

    Elodie A Courtois

    Full Text Available Although dramatic amphibian declines have been documented worldwide, only few of such events have been quantitatively documented for the tropical forests of South America. This is due partly to the fact that tropical amphibians are patchily distributed and difficult to detect. We tested three methods often used to monitor population trends in amphibian species in a remote lowland tropical forest of French Guiana. These methods are capture-mark-recapture (CMR, estimation of the number of calling males with repeated counts data and distance sampling, and rates of occupancy inferred by presence/absence data. We monitored eight diurnal, terrestrial amphibian species including five Dendrobatidae and three Bufonidae. We found that CMR, the most precise way of estimating population size, can be used only with two species in high density patches where the recapture rate is high enough. Only for one of the species (Dendrobates tinctorius, a low coefficient of variation (CV = 0.19 can be achieved with 15 to 20 capture events. For dendrobatid species with day-calling males, audio surveys yield a better probability of detection with only 8 audio surveys needed; quantitative estimates can be achieved by computing the number of calling males inferred from audio counts or distance sampling analysis. We therefore suggest that an efficient monitoring protocol for Neotropical amphibian species should include a combination of sighting and audio techniques, and we discuss the need of implementing a large-scale monitoring in order to provide a baseline for comparison with future changes.

  2. Characterisation of false-positive observations in botanical surveys

    Directory of Open Access Journals (Sweden)

    Quentin J. Groom

    2017-05-01

    Full Text Available Errors in botanical surveying are a common problem. The presence of a species is easily overlooked, leading to false-absences; while misidentifications and other mistakes lead to false-positive observations. While it is common knowledge that these errors occur, there are few data that can be used to quantify and describe these errors. Here we characterise false-positive errors for a controlled set of surveys conducted as part of a field identification test of botanical skill. Surveys were conducted at sites with a verified list of vascular plant species. The candidates were asked to list all the species they could identify in a defined botanically rich area. They were told beforehand that their final score would be the sum of the correct species they listed, but false-positive errors counted against their overall grade. The number of errors varied considerably between people, some people create a high proportion of false-positive errors, but these are scattered across all skill levels. Therefore, a person’s ability to correctly identify a large number of species is not a safeguard against the generation of false-positive errors. There was no phylogenetic pattern to falsely observed species; however, rare species are more likely to be false-positive as are species from species rich genera. Raising the threshold for the acceptance of an observation reduced false-positive observations dramatically, but at the expense of more false negative errors. False-positive errors are higher in field surveying of plants than many people may appreciate. Greater stringency is required before accepting species as present at a site, particularly for rare species. Combining multiple surveys resolves the problem, but requires a considerable increase in effort to achieve the same sensitivity as a single survey. Therefore, other methods should be used to raise the threshold for the acceptance of a species. For example, digital data input systems that can verify

  3. Surveying Caulerpa (Chlorophyta species along the shores of the eastern Mediterranean

    Directory of Open Access Journals (Sweden)

    S. UKABI

    2012-02-01

    Full Text Available Caulerpa (Chlorophyta species inhabiting intertidal and shallow subtidal areas along the Israeli Mediterranean shores were surveyed (i.e. presence/absence on a seasonal basis from 2007-2009. We recorded the presence of three speciesC. prolifera, C. mexicana, and C. scalpelliformis. These species were noticeable in autumn and inconspicuous during winter, thus, revealing seasonality and population dynamics. There were no indications of well-known invasive species such as Caulerpa racemosa var.cylindracea and Caulerpa taxifolia. This study is the first of a kind that assesses the geographical distribution and seasonality of the genus Caulerpa along the Israeli shores.

  4. ALMACAL I: FIRST DUAL-BAND NUMBER COUNTS FROM A DEEP AND WIDE ALMA SUBMILLIMETER SURVEY, FREE FROM COSMIC VARIANCE

    Energy Technology Data Exchange (ETDEWEB)

    Oteo, I.; Ivison, R. J. [Institute for Astronomy, University of Edinburgh, Royal Observatory, Blackford Hill, Edinburgh EH9 3HJ UK (United Kingdom); Zwaan, M. A.; Biggs, A. D. [European Southern Observatory, Karl-Schwarzschild-Strasse 2, D-85748 Garching (Germany); Smail, I., E-mail: ivanoteogomez@gmail.com [Centre for Extragalactic Astronomy, Department of Physics, Durham University, South Road, Durham DH1 3LE UK (United Kingdom)

    2016-05-01

    We have exploited ALMA calibration observations to carry out a novel, wide, and deep submillimeter (submm) survey, almacal. These calibration data comprise a large number of observations of calibrator fields in a variety of frequency bands and array configurations. By gathering together data acquired during multiple visits to many ALMA calibrators, it is possible to reach noise levels which allow the detection of faint, dusty, star-forming galaxies (DSFGs) over a significant area. In this paper, we outline our survey strategy and report the first results. We have analyzed data for 69 calibrators, reaching depths of ∼25 μ Jy beam{sup −1} at sub-arcsec resolution. Adopting a conservative approach based on ≥5 σ detections, we have found 8 and 11 DSFGs in ALMA bands 6 and 7, respectively, with flux densities S {sub 1.2} m {sub m} ≥ 0.2 mJy. The faintest galaxies would have been missed by even the deepest Herschel surveys. Our cumulative number counts have been determined independently at 870 μ m and 1.2 mm from a sparse sampling of the astronomical sky, and are thus relatively free of cosmic variance. The counts are lower than reported previously by a factor of at least 2×. Future analyses will yield large, secure samples of DSFGs with redshifts determined via the detection of submm spectral lines. Uniquely, our strategy then allows for morphological studies of very faint DSFGs—representative of more normal star-forming galaxies than conventional submm galaxies—in fields where self-calibration is feasible, yielding milliarcsecond spatial resolution.

  5. Post-precipitation bias in band-tailed pigeon surveys conducted at mineral sites

    Science.gov (United States)

    Overton, C.T.; Schmitz, R.A.; Casazza, Michael L.

    2005-01-01

    Many animal surveys to estimate populations or index trends include protocol prohibiting counts during rain but fail to address effects of rainfall preceding the count. Prior research on Pacific Coast band-tailed pigeons (Patagioenas fasciata monilis) documented declines in use of mineral sites during rainfall. We hypothesized that prior precipitation was associated with a short-term increase in use of mineral sites following rain. We conducted weekly counts of band-tailed pigeons at 19 Pacific Northwest mineral sites in 2001 and 20 sites in 2002. Results from regression analysis indicated higher counts ???2 days after rain (11.31??5.00% [x????SE]) compared to ???3 days. Individual index counts conducted ???2 days after rain were biased high, resulting in reduced ability to accurately estimate population trends. Models of band-tailed pigeon visitation rates throughout the summer showed increased mineral-site counts during both June and August migration periods, relative to the July breeding period. Our research supported previous studies recommending that mineral-site counts used to index the band-tailed pigeon population be conducted during July. We further recommend conducting counts >3 days after rain to avoid weather-related bias in index estimation. The design of other population sampling strategies that rely on annual counts should consider the influence of aberrant weather not only coincident with but also preceding surveys if weather patterns are thought to influence behavior or detection probability of target species.

  6. Integrating count and detection–nondetection data to model population dynamics

    Science.gov (United States)

    Zipkin, Elise F.; Rossman, Sam; Yackulic, Charles B.; Wiens, David; Thorson, James T.; Davis, Raymond J.; Grant, Evan H. Campbell

    2017-01-01

    There is increasing need for methods that integrate multiple data types into a single analytical framework as the spatial and temporal scale of ecological research expands. Current work on this topic primarily focuses on combining capture–recapture data from marked individuals with other data types into integrated population models. Yet, studies of species distributions and trends often rely on data from unmarked individuals across broad scales where local abundance and environmental variables may vary. We present a modeling framework for integrating detection–nondetection and count data into a single analysis to estimate population dynamics, abundance, and individual detection probabilities during sampling. Our dynamic population model assumes that site-specific abundance can change over time according to survival of individuals and gains through reproduction and immigration. The observation process for each data type is modeled by assuming that every individual present at a site has an equal probability of being detected during sampling processes. We examine our modeling approach through a series of simulations illustrating the relative value of count vs. detection–nondetection data under a variety of parameter values and survey configurations. We also provide an empirical example of the model by combining long-term detection–nondetection data (1995–2014) with newly collected count data (2015–2016) from a growing population of Barred Owl (Strix varia) in the Pacific Northwest to examine the factors influencing population abundance over time. Our model provides a foundation for incorporating unmarked data within a single framework, even in cases where sampling processes yield different detection probabilities. This approach will be useful for survey design and to researchers interested in incorporating historical or citizen science data into analyses focused on understanding how demographic rates drive population abundance.

  7. Evaluating autonomous acoustic surveying techniques for rails in tidal marshes

    Science.gov (United States)

    Stiffler, Lydia L.; Anderson, James T.; Katzner, Todd

    2018-01-01

    There is a growing interest toward the use of autonomous recording units (ARUs) for acoustic surveying of secretive marsh bird populations. However, there is little information on how ARUs compare to human surveyors or how best to use ARU data that can be collected continuously throughout the day. We used ARUs to conduct 2 acoustic surveys for king (Rallus elegans) and clapper rails (R. crepitans) within a tidal marsh complex along the Pamunkey River, Virginia, USA, during May–July 2015. To determine the effectiveness of an ARU in replacing human personnel, we compared results of callback point‐count surveys with concurrent acoustic recordings and calculated estimates of detection probability for both rail species combined. The success of ARUs at detecting rails that human observers recorded decreased with distance (P ≤ 0.001), such that at of human‐recorded rails also were detected by the ARU, but at >75 m, only 34.0% of human‐detected rails were detected by the ARU. To determine a subsampling scheme for continuous ARU data that allows for effective surveying of presence and call rates of rails, we used ARUs to conduct 15 continuous 48‐hr passive surveys, generating 720 hr of recordings. We established 5 subsampling periods of 5, 10, 15, 30, and 45 min to evaluate ARU‐based presence and vocalization detections of rails compared with each of the full 60‐min sampling of ARU‐based detection of rails. All subsampling periods resulted in different (P ≤ 0.001) detection rates and unstandardized vocalization rates compared with the hourly sampling period. However, standardized vocalization counts from the 30‐min subsampling period were not different from vocalization counts of the full hourly sampling period. When surveying rail species in estuarine environments, species‐, habitat‐, and ARU‐specific limitations to ARU sampling should be considered when making inferences about abundances and distributions from ARU data. 

  8. The Prevention of the Workplace Harassment at Japanese Universities:The Perspective of the Research and the Findings from the Complete Count Survey

    Science.gov (United States)

    Kawabata, Tomoko

    2014-01-01

    This article shows the perspective of this research and the result of the complete count survey performed from October to November in 2013 to examine the attitude toward the prevention and the resolution of the workplace harassment at the Japanese universities. The questionnaire was distributed to 1131 universities, two years colleges, and…

  9. Optimizing the duration of point counts for monitoring trends in bird populations

    Science.gov (United States)

    Jared Verner

    1988-01-01

    Minute-by-minute analysis of point counts of birds in mixed-conifer forests in the Sierra National Forest, central California, showed that cumulative counts of species and individuals increased in a curvilinear fashion but did not reach asymptotes after 10 minutes of counting. Comparison of the expected number of individuals counted per hour with various combinations...

  10. The Herschel Virgo Cluster Survey. XVII. SPIRE point-source catalogs and number counts

    Science.gov (United States)

    Pappalardo, Ciro; Bendo, George J.; Bianchi, Simone; Hunt, Leslie; Zibetti, Stefano; Corbelli, Edvige; di Serego Alighieri, Sperello; Grossi, Marco; Davies, Jonathan; Baes, Maarten; De Looze, Ilse; Fritz, Jacopo; Pohlen, Michael; Smith, Matthew W. L.; Verstappen, Joris; Boquien, Médéric; Boselli, Alessandro; Cortese, Luca; Hughes, Thomas; Viaene, Sebastien; Bizzocchi, Luca; Clemens, Marcel

    2015-01-01

    Aims: We present three independent catalogs of point-sources extracted from SPIRE images at 250, 350, and 500 μm, acquired with the Herschel Space Observatory as a part of the Herschel Virgo Cluster Survey (HeViCS). The catalogs have been cross-correlated to consistently extract the photometry at SPIRE wavelengths for each object. Methods: Sources have been detected using an iterative loop. The source positions are determined by estimating the likelihood to be a real source for each peak on the maps, according to the criterion defined in the sourceExtractorSussextractor task. The flux densities are estimated using the sourceExtractorTimeline, a timeline-based point source fitter that also determines the fitting procedure with the width of the Gaussian that best reproduces the source considered. Afterwards, each source is subtracted from the maps, removing a Gaussian function in every position with the full width half maximum equal to that estimated in sourceExtractorTimeline. This procedure improves the robustness of our algorithm in terms of source identification. We calculate the completeness and the flux accuracy by injecting artificial sources in the timeline and estimate the reliability of the catalog using a permutation method. Results: The HeViCS catalogs contain about 52 000, 42 200, and 18 700 sources selected at 250, 350, and 500 μm above 3σ and are ~75%, 62%, and 50% complete at flux densities of 20 mJy at 250, 350, 500 μm, respectively. We then measured source number counts at 250, 350, and 500 μm and compare them with previous data and semi-analytical models. We also cross-correlated the catalogs with the Sloan Digital Sky Survey to investigate the redshift distribution of the nearby sources. From this cross-correlation, we select ~2000 sources with reliable fluxes and a high signal-to-noise ratio, finding an average redshift z ~ 0.3 ± 0.22 and 0.25 (16-84 percentile). Conclusions: The number counts at 250, 350, and 500 μm show an increase in

  11. Survey of fungal counts and natural occurrence of aflatoxins in Malaysian starch-based foods.

    Science.gov (United States)

    Abdullah, N; Nawawi, A; Othman, I

    1998-01-01

    In a survey of starch-based foods sampled from retail outlets in Malaysia, fungal colonies were mostly detected in wheat flour (100%), followed by rice flour (74%), glutinous rice grains (72%), ordinary rice grains (60%), glutinous rice flour (48%) and corn flour (26%). All positive samples of ordinary rice and glutinous rice grains had total fungal counts below 10(3) cfu/g sample, while among the positive rice flour, glutinous rice flour and corn flour samples, the highest total fungal count was more than 10(3) but less than 10(4) cfu/g sample respectively. However, in wheat flour samples total fungal count ranged from 10(2) cfu/g sample to slightly more than 10(4) cfu/g sample. Aflatoxigenic colonies were mostly detected in wheat flour (20%), followed by ordinary rice grains (4%), glutinous rice grains (4%) and glutinous rice flour (2%). No aflatoxigenic colonies were isolated from rice flour and corn flour samples. Screening of aflatoxin B1, aflatoxin B2, aflatoxin G1 and aflatoxin G2 using reversed-phase HPLC were carried out on 84 samples of ordinary rice grains and 83 samples of wheat flour. Two point four percent (2.4%) of ordinary rice grains were positive for aflatoxin G1 and 3.6% were positive for aflatoxin G2. All the positive samples were collected from private homes at concentrations ranging from 3.69-77.50 micrograms/kg. One point two percent (1.2%) of wheat flour samples were positive for aflatoxin B1 at a concentration of 25.62 micrograms/kg, 4.8% were positive for aflatoxin B2 at concentrations ranging from 11.25-252.50 micrograms/kg, 3.6% were positive for aflatoxin G1 at concentrations ranging from 25.00-289.38 micrograms/kg and 13.25% were positive for aflatoxin G2 at concentrations ranging from 16.25-436.25 micrograms/kg. Similarly, positive wheat flour samples were mostly collected from private homes.

  12. Relationship between salivary flow rates and Candida counts in subjects with xerostomia.

    Science.gov (United States)

    Torres, Sandra R; Peixoto, Camila Bernardo; Caldas, Daniele Manhães; Silva, Eline Barboza; Akiti, Tiyomi; Nucci, Márcio; de Uzeda, Milton

    2002-02-01

    This study evaluated the relationship between salivary flow and Candida colony counts in the saliva of patients with xerostomia. Sialometry and Candida colony-forming unit (CFU) counts were taken from 112 subjects who reported xerostomia in a questionnaire. Chewing-stimulated whole saliva was collected and streaked in Candida plates and counted in 72 hours. Species identification was accomplished under standard methods. There was a significant inverse relationship between salivary flow and Candida CFU counts (P =.007) when subjects with high colony counts were analyzed (cutoff point of 400 or greater CFU/mL). In addition, the median sialometry of men was significantly greater than that of women (P =.003), even after controlling for confounding variables like underlying disease and medications. Sjögren's syndrome was associated with low salivary flow rate (P =.007). There was no relationship between the median Candida CFU counts and gender or age. There was a high frequency (28%) of mixed colonization. Candida albicans was the most frequent species, followed by C parapsilosis, C tropicalis, and C krusei. In subjects with high Candida CFU counts there was an inverse relationship between salivary flow and Candida CFU counts.

  13. Combining counts and incidence data: an efficient approach for estimating the log-normal species abundance distribution and diversity indices.

    Science.gov (United States)

    Bellier, Edwige; Grøtan, Vidar; Engen, Steinar; Schartau, Ann Kristin; Diserud, Ola H; Finstad, Anders G

    2012-10-01

    Obtaining accurate estimates of diversity indices is difficult because the number of species encountered in a sample increases with sampling intensity. We introduce a novel method that requires that the presence of species in a sample to be assessed while the counts of the number of individuals per species are only required for just a small part of the sample. To account for species included as incidence data in the species abundance distribution, we modify the likelihood function of the classical Poisson log-normal distribution. Using simulated community assemblages, we contrast diversity estimates based on a community sample, a subsample randomly extracted from the community sample, and a mixture sample where incidence data are added to a subsample. We show that the mixture sampling approach provides more accurate estimates than the subsample and at little extra cost. Diversity indices estimated from a freshwater zooplankton community sampled using the mixture approach show the same pattern of results as the simulation study. Our method efficiently increases the accuracy of diversity estimates and comprehension of the left tail of the species abundance distribution. We show how to choose the scale of sample size needed for a compromise between information gained, accuracy of the estimates and cost expended when assessing biological diversity. The sample size estimates are obtained from key community characteristics, such as the expected number of species in the community, the expected number of individuals in a sample and the evenness of the community.

  14. A rapid assessment survey of invasive species of macrobenthic invertebrates in Korean waters

    Science.gov (United States)

    Park, Chul; Kim, Sung-Tae; Hong, Jae-Sang; Choi, Keun-Hyung

    2017-09-01

    Introduced species are a growing and imminent threat to living marine resources in parts of the world's oceans. The present study is a rapid assessment survey of invasive macrobenthic invertebrate species in Korean ports. We surveyed over 40 ports around Korea during the period of May 2010 March 2013. Among the sampling sites were concrete walls, docks and associated floats, bumpers, tires, and ropes which might harbor non-native species. We found 15 invasive species as follows: one Sponge, two Bryozoans, three Mollusks, one Polychaete, four Cirripedes, and four Ascidians. Three morphologically similar species, namely X. atrata, M. galloprovincialis, and X. securis were further examined for distinctions in their morphology. Although they could be reasonably distinguished based on shell shapes, significant overlap was noted so that additional analysis may be required to correctly distinguish them. Although many of the introduced species have already spread to all three coastal areas, newly arrived invasive species showed a relatively restricted range, with a serpulid polychaete Ficopomatus enigmaticus and a mytilid bivalve Xenostrobus securis found only at a few sites on the East Coast. An exception is for Balanus perforatus, which has rapidly colonized the East coast of Korea following its introduction into the region. Successful management of invasive macrobenthic invertebrates should be established in order to contain the spread of these newly arrived species.

  15. HOW MANY HIPPOS (HOMHIP: ALGORITHM FOR AUTOMATIC COUNTS OF ANIMALS WITH INFRA-RED THERMAL IMAGERY FROM UAV

    Directory of Open Access Journals (Sweden)

    S. Lhoest

    2015-08-01

    Full Text Available The common hippopotamus (Hippopotamus amphibius L. is part of the animal species endangered because of multiple human pressures. Monitoring of species for conservation is then essential, and the development of census protocols has to be chased. UAV technology is considering as one of the new perspectives for wildlife survey. Indeed, this technique has many advantages but its main drawback is the generation of a huge amount of data to handle. This study aims at developing an algorithm for automatic count of hippos, by exploiting thermal infrared aerial images acquired from UAV. This attempt is the first known for automatic detection of this species. Images taken at several flight heights can be used as inputs of the algorithm, ranging from 38 to 155 meters above ground level. A Graphical User Interface has been created in order to facilitate the use of the application. Three categories of animals have been defined following their position in water. The mean error of automatic counts compared with manual delineations is +2.3% and shows that the estimation is unbiased. Those results show great perspectives for the use of the algorithm in populations monitoring after some technical improvements and the elaboration of statistically robust inventories protocols.

  16. A matrix-inversion method for gamma-source mapping from gamma-count data - 59082

    International Nuclear Information System (INIS)

    Bull, Richard K.; Adsley, Ian; Burgess, Claire

    2012-01-01

    Gamma ray counting is often used to survey the distribution of active waste material in various locations. Ideally the output from such surveys would be a map of the activity of the waste. In this paper a simple matrix-inversion method is presented. This allows an array of gamma-count data to be converted to an array of source activities. For each survey area the response matrix is computed using the gamma-shielding code Microshield [1]. This matrix links the activity array to the count array. The activity array is then obtained via matrix inversion. The method was tested on artificially-created arrays of count-data onto which statistical noise had been added. The method was able to reproduce, quite faithfully, the original activity distribution used to generate the dataset. The method has been applied to a number of practical cases, including the distribution of activated objects in a hot cell and to activated Nimonic springs amongst fuel-element debris in vaults at a nuclear plant. (authors)

  17. Three dimensional marine seismic survey has no measurable effect on species richness or abundance of a coral reef associated fish community

    International Nuclear Information System (INIS)

    Miller, Ian; Cripps, Edward

    2013-01-01

    Highlights: • A marine seismic survey was conducted at Scott Reef, North Western Australia. • Effects of the survey on demersal fish were gauged using underwater visual census. • There was no detectable impact of the seismic survey on species abundance. • There was no detectable impact of the seismic survey on species richness. -- Abstract: Underwater visual census was used to determine the effect of a three dimensional seismic survey on the shallow water coral reef slope associated fish community at Scott Reef. A census of the fish community was conducted on six locations at Scott Reef both before and after the survey. The census included small site attached demersal species belonging to the family Pomacentridae and larger roving demersal species belonging to the non-Pomacentridae families. These data were combined with a decade of historical data to assess the impact of the seismic survey. Taking into account spatial, temporal, spatio-temporal and observer variability, modelling showed no significant effect of the seismic survey on the overall abundance or species richness of Pomacentridae or non-Pomacentridae. The six most abundant species were also analysed individually. In all cases no detectable effect of the seismic survey was found on the abundance of these fish species at Scott Reef

  18. A comparison of multiple indicator kriging and area-to-point Poisson kriging for mapping patterns of herbivore species abundance in Kruger National Park, South Africa.

    Science.gov (United States)

    Kerry, Ruth; Goovaerts, Pierre; Smit, Izak P J; Ingram, Ben R

    Kruger National Park (KNP), South Africa, provides protected habitats for the unique animals of the African savannah. For the past 40 years, annual aerial surveys of herbivores have been conducted to aid management decisions based on (1) the spatial distribution of species throughout the park and (2) total species populations in a year. The surveys are extremely time consuming and costly. For many years, the whole park was surveyed, but in 1998 a transect survey approach was adopted. This is cheaper and less time consuming but leaves gaps in the data spatially. Also the distance method currently employed by the park only gives estimates of total species populations but not their spatial distribution. We compare the ability of multiple indicator kriging and area-to-point Poisson kriging to accurately map species distribution in the park. A leave-one-out cross-validation approach indicates that multiple indicator kriging makes poor estimates of the number of animals, particularly the few large counts, as the indicator variograms for such high thresholds are pure nugget. Poisson kriging was applied to the prediction of two types of abundance data: spatial density and proportion of a given species. Both Poisson approaches had standardized mean absolute errors (St. MAEs) of animal counts at least an order of magnitude lower than multiple indicator kriging. The spatial density, Poisson approach (1), gave the lowest St. MAEs for the most abundant species and the proportion, Poisson approach (2), did for the least abundant species. Incorporating environmental data into Poisson approach (2) further reduced St. MAEs.

  19. The Modular Optical Underwater Survey System

    Directory of Open Access Journals (Sweden)

    Ruhul Amin

    2017-10-01

    Full Text Available The Pacific Islands Fisheries Science Center deploys the Modular Optical Underwater Survey System (MOUSS to estimate the species-specific, size-structured abundance of commercially-important fish species in Hawaii and the Pacific Islands. The MOUSS is an autonomous stereo-video camera system designed for the in situ visual sampling of fish assemblages. This system is rated to 500 m and its low-light, stereo-video cameras enable identification, counting, and sizing of individuals at a range of 0.5–10 m. The modular nature of MOUSS allows for the efficient and cost-effective use of various imaging sensors, power systems, and deployment platforms. The MOUSS is in use for surveys in Hawaii, the Gulf of Mexico, and Southern California. In Hawaiian waters, the system can effectively identify individuals to a depth of 250 m using only ambient light. In this paper, we describe the MOUSS’s application in fisheries research, including the design, calibration, analysis techniques, and deployment mechanism.

  20. Zooplankton species identification and counts data from drifting station ARLIS II and Fletchers ice island T-3 in the Arctic Ocean from 19521229 to 19680129 (NODC Accession 6900643)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — These data are counts of 3 copepod species collected during plankton tows in the Arctic Ocean from December 1952 through January 1968 by the University of...

  1. Using expert opinion surveys to rank threats to endangered species: a case study with sea turtles.

    Science.gov (United States)

    Donlan, C Josh; Wingfield, Dana K; Crowder, Larry B; Wilcox, Chris

    2010-12-01

    Little is known about how specific anthropogenic hazards affect the biology of organisms. Quantifying the effect of regional hazards is particularly challenging for species such as sea turtles because they are migratory, difficult to study, long lived, and face multiple anthropogenic threats. Expert elicitation, a technique used to synthesize opinions of experts while assessing uncertainty around those views, has been in use for several decades in the social science and risk assessment sectors. We conducted an internet-based survey to quantify expert opinion on the relative magnitude of anthropogenic hazards to sea turtle populations at the regional level. Fisheries bycatch and coastal development were most often ranked as the top hazards to sea turtle species in a geographic region. Nest predation and direct take followed as the second and third greatest threats, respectively. Survey results suggest most experts believe sea turtles are threatened by multiple factors, including substantial at-sea threats such as fisheries bycatch. Resources invested by the sea turtle community, however, appear biased toward terrestrial-based impacts. Results from the survey are useful for conservation planning because they provide estimates of relative impacts of hazards on sea turtles and a measure of consensus on the magnitude of those impacts among researchers and practitioners. Our survey results also revealed patterns of expert bias, which we controlled for in our analysis. Respondents with no experience with respect to a sea turtle species tended to rank hazards affecting that sea turtle species higher than respondents with experience. A more-striking pattern was with hazard-based expertise: the more experience a respondent had with a specific hazard, the higher the respondent scored the impact of that hazard on sea turtle populations. Bias-controlled expert opinion surveys focused on threatened species and their hazards can help guide and expedite species recovery plans.

  2. Population Size and Decadal Trends of Three Penguin Species Nesting at Signy Island, South Orkney Islands.

    Science.gov (United States)

    Dunn, Michael J; Jackson, Jennifer A; Adlard, Stacey; Lynnes, Amanda S; Briggs, Dirk R; Fox, Derren; Waluda, Claire M

    2016-01-01

    We report long-term changes in population size of three species of sympatrically breeding pygoscelid penguins: Adélie (Pygoscelis adeliae), chinstrap (Pygoscelis antarctica) and gentoo (Pygoscelis papua ellsworthii) over a 38 year period at Signy Island, South Orkney Islands, based on annual counts from selected colonies and decadal all-island systematic counts of occupied nests. Comparing total numbers of breeding pairs over the whole island from 1978/79 to 2015/16 revealed varying fortunes: gentoo penguin pairs increased by 255%, (3.5% per annum), chinstrap penguins declined by 68% (-3.6% per annum) and Adélie penguins declined by 42% (-1.5% per annum). The chinstrap population has declined steadily over the last four decades. In contrast, Adélie and gentoo penguins have experienced phases of population increase and decline. Annual surveys of selected chinstrap and Adélie colonies produced similar trends from those revealed by island-wide surveys, allowing total island population trends to be inferred relatively well. However, while the annual colony counts of chinstrap and Adélie penguins showed a trend consistent in direction with the results from all-island surveys, the magnitude of estimated population change was markedly different between colony wide and all island counts. Annual population patterns suggest that pair numbers in the study areas partly reflect immigration and emigration of nesting birds between different parts of the island. Breeding success for all three species remained broadly stable over time in the annually monitored colonies. Breeding success rates in gentoo and chinstrap penguins were strongly correlated, despite the differing trends in population size. This study shows the importance of effective, standardised monitoring to accurately determine long-term population trajectories. Our results indicate significant declines in the Adélie and chinstrap penguin populations at Signy Island over the last five decades, and a gradual

  3. The prevalence and distribution of Fusarium species in Norwegian cereals: a survey

    DEFF Research Database (Denmark)

    Kosiak, B.; Torp, M.; Skjerve, E.

    2003-01-01

    the regions. A total of 695 grain samples were analysed. The amount of Fusarium infection varied with cereal species and region of origin. The most frequently isolated Fusarium spp. from all samples were F. avenaceum, F. poae, F. tricinctum and F. culmorum. Other important toxigenic Fusarium spp. were F......In the period 1994-1996 a post-harvest survey was conducted in wheat, barley and oats to assess the occurrence and geographic distribution of Fusarium species in Norwegian cereals. The number of samples investigated was adjusted proportionally to the production of each cereal species within...... and F. culmorum demonstrated in this study , corresponded to previously reported DON-distribution, although DON seems to be produced by different species in different regions. Distribution of the isolated Fusarium species and comparison between cereals and locations are discussed....

  4. A new stratification of mourning dove call-count routes

    Science.gov (United States)

    Blankenship, L.H.; Humphrey, A.B.; MacDonald, D.

    1971-01-01

    The mourning dove (Zenaidura macroura) call-count survey is a nationwide audio-census of breeding mourning doves. Recent analyses of the call-count routes have utilized a stratification based upon physiographic regions of the United States. An analysis of 5 years of call-count data, based upon stratification using potential natural vegetation, has demonstrated that this uew stratification results in strata with greater homogeneity than the physiographic strata, provides lower error variance, and hence generates greatet precision in the analysis without an increase in call-count routes. Error variance was reduced approximately 30 percent for the contiguous United States. This indicates that future analysis based upon the new stratification will result in an increased ability to detect significant year-to-year changes.

  5. The influence of habitat structure on bird species composition in lowland malaysian rain forests.

    Science.gov (United States)

    Mansor, Mohammad Saiful; Sah, Shahrul Anuar Mohd

    2012-05-01

    Bird surveys were conducted in the Bukit Kepala Gajah limestone area in Lenggong, Perak from July 2010 to January 2011. The study area was divided into three zones: forest edge, forest intermediate and forest interior. A point-count distance sampling method was used in the bird surveys. The study recorded 7789 detections, representing 100 bird species belonging to 28 families. Pycnonotidae, Timaliidae and Nectariniidae were the dominant families overall and showed the highest number of observations recorded in the study area whereas Motacillidae showed the fewest observations. The bird species were grouped into three feeding guilds: insectivores, frugivores and others (omnivores, carnivores, nectarivores and granivores). The species richness of insectivorous birds differed significantly among the forest zones sampled (Kruskal-Wallis: α=0.05, H=10.979, d.f.=2, p=0.004), with more insectivorous birds occurring in the forest interior. No significant differences were found among the zones in the species richness of either the frugivore guild or the composite others guild.

  6. Status and Trend of Regal Fritillary (Speyeria idalia (Lepidoptera: Nymphalidae in the 4th of July Butterfly Count Program in 1977–2014

    Directory of Open Access Journals (Sweden)

    Scott R. Swengel

    2016-01-01

    Full Text Available Regal Fritillary (Speyeria idalia primarily inhabits prairie, a native grassland of central North America, and occurs rarely in nonprairie grasslands further east. This butterfly has experienced widespread decline and marked range contraction. We analyze Regal Fritillary incidence and abundance during 1977–2014 in 4th of July Butterfly Counts, an annual census of butterflies in North America. Volunteers count within the same 24 km diameter circle each year. Only 6% of counts in range reported a Regal, while 18% of counts in core range in the Midwest and Great Plains did. 99.9% of Regal individuals occurred in core range. Only four circles east of core range reported this species, and only during the first half of the study period. All individuals reported west of its main range occurred in two circles in Colorado in the second half of the study. The number of counts per year and survey effort per count increased during the study. During 1991–2014, >31 counts occurred per year in core Regal range, compared to 0–23 during 1975–1990. During 1991–2014, all measures of Regal presence and abundance declined, most significantly. These results agree with other sources that Regal Fritillary has contracted its range and declined in abundance.

  7. Development of a mobile application for manual traffic counts

    Directory of Open Access Journals (Sweden)

    Ghanim Mohammad

    2017-01-01

    Full Text Available The use of technology in performing traffic counts has become widely used by many transportation agencies and private sectors. Different technologies have been employed to perform such counts, such as inductive loops, image processing, Bluetooth technologies, and laser and infrared technologies. However, the use of these advanced technologies come with extra cost to develop, install, and maintain. While the use of advanced technologies provide reliable traffic counts and vehicle classifications data, the use of manual traffic is an inevitable task. Manual traffic counts can serve different purposes, such as performing quality control or conducting short-term traffic survey. Manual traffic counts are usually conducted with the use of the traditional paper-and-pencil approach or the use of hand-held devices that are specifically developed to assess performing manual traffic counts. In this paper, the development of a mobile app that can be used to assist those who need to perform manual traffic counts. The app can be used by many public agencies, private sectors, and college students to collect their traffic data. It also provides users with the capabilities of sharing their traffic counts instantly, where traffic counts can be extracted and processed quickly by other parties.

  8. Counting on dis-inhibition: a circuit motif for interval counting and selectivity in the anuran auditory system.

    Science.gov (United States)

    Naud, Richard; Houtman, Dave; Rose, Gary J; Longtin, André

    2015-11-01

    Information can be encoded in the temporal patterning of spikes. How the brain reads these patterns is of general importance and represents one of the greatest challenges in neuroscience. We addressed this issue in relation to temporal pattern recognition in the anuran auditory system. Many species of anurans perform mating decisions based on the temporal structure of advertisement calls. One important temporal feature is the number of sound pulses that occur with a species-specific interpulse interval. Neurons representing this pulse count have been recorded in the anuran inferior colliculus, but the mechanisms underlying their temporal selectivity are incompletely understood. Here, we construct a parsimonious model that can explain the key dynamical features of these cells with biologically plausible elements. We demonstrate that interval counting arises naturally when combining interval-selective inhibition with pulse-per-pulse excitation having both fast- and slow-conductance synapses. Interval-dependent inhibition is modeled here by a simple architecture based on known physiology of afferent nuclei. Finally, we consider simple implementations of previously proposed mechanistic explanations for these counting neurons and show that they do not account for all experimental observations. Our results demonstrate that tens of millisecond-range temporal selectivities can arise from simple connectivity motifs of inhibitory neurons, without recourse to internal clocks, spike-frequency adaptation, or appreciable short-term plasticity. Copyright © 2015 the American Physiological Society.

  9. A New Method for Calculating Counts in Cells

    Science.gov (United States)

    Szapudi, István

    1998-04-01

    In the near future, a new generation of CCD-based galaxy surveys will enable high-precision determination of the N-point correlation functions. The resulting information will help to resolve the ambiguities associated with two-point correlation functions, thus constraining theories of structure formation, biasing, and Gaussianity of initial conditions independently of the value of Ω. As one of the most successful methods of extracting the amplitude of higher order correlations is based on measuring the distribution of counts in cells, this work presents an advanced way of measuring it with unprecedented accuracy. Szapudi & Colombi identified the main sources of theoretical errors in extracting counts in cells from galaxy catalogs. One of these sources, termed as measurement error, stems from the fact that conventional methods use a finite number of sampling cells to estimate counts in cells. This effect can be circumvented by using an infinite number of cells. This paper presents an algorithm, which in practice achieves this goal; that is, it is equivalent to throwing an infinite number of sampling cells in finite time. The errors associated with sampling cells are completely eliminated by this procedure, which will be essential for the accurate analysis of future surveys.

  10. Survey of Aspergillus and Fusarium species and their mycotoxins in raw materials and poultry feeds from Córdoba, Argentina.

    Science.gov (United States)

    Monge, María Del Pilar; Magnoli, Carina Elizabeth; Chiacchiera, Stella Maris

    2012-05-01

    The aims of the present work were: (1) to determine both mycobiota in raw materials and finisher poultry feed, as well as the ability to produce aflatoxin B1 by A. flavus strains, and (2) to evaluate the natural co-occurrence of aflatoxins (AFs), fumonisins (FBs), gliotoxin, diacetoxyscirpenol (DAS), HT-2 toxin, and T-2 toxin in poultry feed by LC-MS/MS. Nineteen percent of raw materials and 79% of finisher poultry feed samples exceeded the maximum allowed total fungal count (1 × 10(4) CFU g(-1)) to ensure hygienic quality. Aspergillus flavus was the only species belonging to section Flavi which was isolated while Fusarium verticilliodes was the prevalent species. Forty-seven percent of A. flavus strains were aflatoxin B1 producers and the highest frequency of aflatoxigenic strains was isolated from finisher poultry feeds. Principal component analysis showed that corn grains are closely related with total fungal and Fusarium counts. This positive relationship suggests that total fungal and Fusarium spp. counts in poultry feed might come mainly from corn grains. Regarding poultry feeds, in ground finisher type, Aspergillus spp. counts increased as water activity (aw) diminished. A positive relationship among aw, total fungal and Fusarium spp. counts was observed in both ground finisher and ground starter feed. Several mycotoxins were monitored in feeds by applying the LC MS/MS technique. One hundred percent of poultry samples were contaminated with FB1, and the highest levels were detected in pelleted finisher poultry. AFB1, gliotoxin, DAS, HT-2 toxin, and T-2 toxin were not detected in any poultry feed. The scarcity of available mycotoxicological studies from Argentinean poultry feed using a multitoxin analysis technique enhances the contribution of the findings of this report.

  11. Can Detectability Analysis Improve the Utility of Point Counts for Temperate Forest Raptors?

    Science.gov (United States)

    Temperate forest breeding raptors are poorly represented in typical point count surveys because these birds are cryptic and typically breed at low densities. In recent years, many new methods for estimating detectability during point counts have been developed, including distanc...

  12. Pitch Counts in Youth Baseball and Softball: A Historical Review.

    Science.gov (United States)

    Feeley, Brian T; Schisel, Jessica; Agel, Julie

    2018-07-01

    Pitching injuries are getting increased attention in the mass media. Many references are made to pitch counts and the role they play in injury prevention. The original purpose of regulating the pitch count in youth baseball was to reduce injury and fatigue to pitchers. This article reviews the history and development of the pitch count limit in baseball, the effect it has had on injury, and the evidence regarding injury rates on softball windmill pitching. Literature search through PubMed, mass media, and organizational Web sites through June 2015. Pitch count limits and rest recommendations were introduced in 1996 after a survey of 28 orthopedic surgeons and baseball coaches showed injuries to baseball pitchers' arms were believed to be from the number of pitches thrown. Follow-up research led to revised recommendations with more detailed guidelines in 2006. Since that time, data show a relationship between innings pitched and upper extremity injury, but pitch type has not clearly been shown to affect injury rates. Current surveys of coaches and players show that coaches, parents, and athletes often do not adhere to these guidelines. There are no pitch count guidelines currently available in softball. The increase in participation in youth baseball and softball with an emphasis on early sport specialization in youth sports activities suggests that there will continue to be a rise in injury rates to young throwers. The published pitch counts are likely to positively affect injury rates but must be adhered to by athletes, coaches, and parents.

  13. Whole-body counting and dietary surveys in Norway during the first year after the Chernobyl accident

    International Nuclear Information System (INIS)

    Strand, P.; Berteig, L.; Berthelsen, T.; Strand, T.; Boee, E.; Trygg, K.

    1989-01-01

    Doses to the Norwegian population from radiocaesium in food are estimated from whole-body counting and dietary surveys. The average effective dose equivalent during the first year after the Chernobyl accident is estimated to be between 0.12-0.25 mSv. One quarter of the dose is due to consumption of milk. For those of the population specially vulnerable (Lapps excluded), the dose is estimated to be about 1 mSv in the first year. Almost 90% of the dose is due to consumption of reindeer meat, freshwater fish and milk. The corresponding effective dose equivalent for Lapps was estimated to be between 1-3 mSv in the first year. More than 90% of the dose is due to consumption of reindeer meat. Without dietary changes the Lapps would probably have received doses 7-10 times higher. (author)

  14. Using Christmas Bird Count data in analysis of population change

    Science.gov (United States)

    Sauer, J.R.; Link, W.A.

    2002-01-01

    The scientific credibility of Christmas Bird Count (CBC) results depend on the development and implementation of appropriate methods of statistical analysis. The key to any successful analysis of CBC data is to begin with a careful review of how the limitations of the data are likely to influence the results of the analysis, then to choose methods of analysis that accommodate as much as possible the limitations of the survey. For our analyses of CBC data, we develop a flexible model for effort adjustment and use information from the data to guide the selection of the best model. We include geographic structuring to accommodate the regional variation in number of samples, use a model that allows for overdispersed poisson data appropriate for counts, and employ empirical Bayes procedures to accommodate differences in quality of information in regional summaries. This generalized linear model approach is very flexible, and can be applied to a variety of studies focused on factors influencing wintering bird populations. In particular, the model can be easily modified to contain covariates, allowing for assessment of associations between CBC counts and winter weather, disturbance, and a variety of other environmental factors. These new survey analysis methods have added value in that they provide insights into changes in survey design that can enhance the value of the information. The CBC has been extremely successful as a tool for increasing public interest in birding and bird conservation. Use of the information for bird conservation creates new demands on quality of information, and it is important to maintain a dialogue between users of the information, information needs for the analyses, and survey coordinators and participants. Our work as survey analysts emphasizes the value and limitations of existing data, and provides some indications of what features of the survey could be modified to make the survey a more reliable source of bird population data. Surveys

  15. Project of the avifauna near Senigallia: the Misa River. First year of survey

    Directory of Open Access Journals (Sweden)

    Mauro Mencarelli

    2012-09-01

    Full Text Available This study analyzed the birds of the Misa River terminal part, near Senigallia (AN. We collected 28 point counts placed at a distance of 500 m apart and visited each month. We recorded more than 100 species after the first year of survey: this high number of species is due to the residual river vegetation strip, that offers a refuge to a lot of birds, even during migration. Among the breeding species that are included in Birds Directive Attachment I, we found Alcedo atthis, Lanius collurio and Emberiza hortulana. To be ascertained Dendrocopos minor. Several birds of prey were recorded during spring migration, such as Circus aeruginosus.

  16. Honeybee forage, bee visitation counts and the properties of honey ...

    African Journals Online (AJOL)

    The aim of the survey was to document honeybee forage plants and asses honeybee visitation counts on different forage plants and properties of honey from selected agro-ecological zones of Uganda. In order to achieve the objectives of the study, a survey of the apiaries and beekeepers was done by selecting fifteen bee ...

  17. Automatic Counting of Large Mammals from Very High Resolution Panchromatic Satellite Imagery

    NARCIS (Netherlands)

    Xue, Yifei; Wang, Tiejun; Skidmore, Andrew K.

    2017-01-01

    Estimating animal populations by direct counting is an essential component of wildlife conservation and management. However, conventional approaches (i.e., ground survey and aerial survey) have intrinsic constraints. Advances in image data capture and processing provide new opportunities for using

  18. A comparison of morphological and molecular-based surveys to estimate the species richness of Chaetoceros and Thalassiosira (bacillariophyta, in the Bay of Fundy.

    Directory of Open Access Journals (Sweden)

    Sarah E Hamsher

    Full Text Available The goal of this study was to compare the ability of morphology and molecular-based surveys to estimate species richness for two species-rich diatom genera, Chaetoceros Ehrenb. and Thalassiosira Cleve, in the Bay of Fundy. Phytoplankton tows were collected from two sites at intervals over two years and subsampled for morphology-based surveys (2010, 2011, a culture-based DNA reference library (DRL; 2010, and a molecular-based survey (2011. The DRL and molecular-based survey utilized the 3' end of the RUBISCO large subunit (rbcL-3P to identify genetic species groups (based on 0.1% divergence in rbcL-3P, which were subsequently identified morphologically to allow comparisons to the morphology-based survey. Comparisons were compiled for the year (2011 by site (n = 2 and by season (n = 3. Of the 34 taxa included in the comparisons, 50% of taxa were common to both methods, 35% were unique to the molecular-based survey, and 12% were unique to the morphology-based survey, while the remaining 3% of taxa were unidentified genetic species groups. The morphology-based survey excelled at identifying rare taxa in individual tow subsamples, which were occasionally missed with the molecular approach used here, while the molecular methods (the DRL and molecular-based survey, uncovered nine cryptic species pairs and four previously overlooked species. The last mentioned were typically difficult to identify and were generically assigned to Thalassiosira spp. during the morphology-based survey. Therefore, for now we suggest a combined approach encompassing routine morphology-based surveys accompanied by periodic molecular-based surveys to monitor for cryptic and difficult to identify taxa. As sequencing technologies improve, molecular-based surveys should become routine, leading to a more accurate representation of species composition and richness in monitoring programs.

  19. Detection ratios on winter surveys of Rocky Mountain Trumpeter Swans Cygnus buccinator

    Science.gov (United States)

    Bart, J.; Mitchell, C.D.; Fisher, M.N.; Dubovsky, J.A.

    2007-01-01

    We estimated the detection ratio for Rocky Mountain Trumpeter Swans Cygnus buccinator that were counted during aerial surveys made in winter. The standard survey involved counting white or grey birds on snow and ice and thus might be expected to have had low detection ratios. On the other hand, observers were permitted to circle areas where the birds were concentrated multiple times to obtain accurate counts. Actual numbers present were estimated by conducting additional intensive aerial counts either immediately before or immediately after the standard count. Surveyors continued the intensive surveys at each area until consecutive counts were identical. The surveys were made at 10 locations in 2006 and at 19 locations in 2007. A total of 2,452 swans were counted on the intensive surveys. Detection ratios did not vary detectably with year, observer, which survey was conducted first, age of the swans, or the number of swans present. The overall detection ratio was 0.93 (90% confidence interval 0.82-1.04), indicating that the counts were quite accurate. Results are used to depict changes in population size for Rocky Mountain Trumpeter Swans from 1974-2007. ?? Wildfowl & Wetlands Trust.

  20. Photophore counts in the deep-sea commercial shrimp Aristeus alcocki Ramadan, 1938 (Crustacea: Decapoda: Aristeidae), with a revised key to the Indo-West Pacific species of the genus.

    Science.gov (United States)

    Chan, Tin-Yam; Kumar, Appukuttannair Biju; Yang, Chien-Hui

    2017-10-06

    The availability of abundant fresh material of Aristeus alcocki Ramadan, 1938 from India allowed the evaluation of the variation in the numbers of photophores on the pereiopods in this species, as well as other diagnostic characters for species discrimination. Although the pereiopodal photophore counts in A. alcocki largely overlap with those of A. semidentatus Bate, 1888, it is found that A. alcocki is unique in the Indo-West Pacific species of the genus by the lower end of the cervical carina considerably farther away from the branchiostegal carina. Molecular genetic analysis confirmed the distinct taxonomic status of the six currently known species in this genus from the Indo-West Pacific and a revised key is provided for distinguishing them.

  1. Pacific Reef Assessment and Monitoring Program: Rapid Ecological Assessments of Fish Large-Area Stationary Point Count Surveys (SPC) at Coral Reef Sites across the Pacific Ocean from 2000 to 2007

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The large-area stationary point count (SPC) method is used to conduct reef fish surveys in the Hawaiian and Mariana Archipelagos, American Samoa, and the Pacific...

  2. Assessing historical fish community composition using surveys, historical collection data, and species distribution models.

    Science.gov (United States)

    Labay, Ben; Cohen, Adam E; Sissel, Blake; Hendrickson, Dean A; Martin, F Douglas; Sarkar, Sahotra

    2011-01-01

    Accurate establishment of baseline conditions is critical to successful management and habitat restoration. We demonstrate the ability to robustly estimate historical fish community composition and assess the current status of the urbanized Barton Creek watershed in central Texas, U.S.A. Fish species were surveyed in 2008 and the resulting data compared to three sources of fish occurrence information: (i) historical records from a museum specimen database and literature searches; (ii) a nearly identical survey conducted 15 years earlier; and (iii) a modeled historical community constructed with species distribution models (SDMs). This holistic approach, and especially the application of SDMs, allowed us to discover that the fish community in Barton Creek was more diverse than the historical data and survey methods alone indicated. Sixteen native species with high modeled probability of occurrence within the watershed were not found in the 2008 survey, seven of these were not found in either survey or in any of the historical collection records. Our approach allowed us to more rigorously establish the true baseline for the pre-development fish fauna and then to more accurately assess trends and develop hypotheses regarding factors driving current fish community composition to better inform management decisions and future restoration efforts. Smaller, urbanized freshwater systems, like Barton Creek, typically have a relatively poor historical biodiversity inventory coupled with long histories of alteration, and thus there is a propensity for land managers and researchers to apply inaccurate baseline standards. Our methods provide a way around that limitation by using SDMs derived from larger and richer biodiversity databases of a broader geographic scope. Broadly applied, we propose that this technique has potential to overcome limitations of popular bioassessment metrics (e.g., IBI) to become a versatile and robust management tool for determining status of

  3. MEASURING PRIMORDIAL NON-GAUSSIANITY THROUGH WEAK-LENSING PEAK COUNTS

    International Nuclear Information System (INIS)

    Marian, Laura; Hilbert, Stefan; Smith, Robert E.; Schneider, Peter; Desjacques, Vincent

    2011-01-01

    We explore the possibility of detecting primordial non-Gaussianity of the local type using weak-lensing peak counts. We measure the peak abundance in sets of simulated weak-lensing maps corresponding to three models f NL = 0, - 100, and 100. Using survey specifications similar to those of EUCLID and without assuming any knowledge of the lens and source redshifts, we find the peak functions of the non-Gaussian models with f NL = ±100 to differ by up to 15% from the Gaussian peak function at the high-mass end. For the assumed survey parameters, the probability of fitting an f NL = 0 peak function to the f NL = ±100 peak functions is less than 0.1%. Assuming the other cosmological parameters are known, f NL can be measured with an error Δf NL ∼ 13. It is therefore possible that future weak-lensing surveys like EUCLID and LSST may detect primordial non-Gaussianity from the abundance of peak counts, and provide information complementary to that obtained from the cosmic microwave background.

  4. Hyperspectral classification of grassland species: towards a UAS application for semi-automatic field surveys

    Science.gov (United States)

    Lopatin, Javier; Fassnacht, Fabian E.; Kattenborn, Teja; Schmidtlein, Sebastian

    2017-04-01

    Grasslands are one of the ecosystems that have been strongly intervened during the past decades due to anthropogenic impacts, affecting their structural and functional composition. To monitor the spatial and/or temporal changes of these environments, a reliable field survey is first needed. As quality relevés are usually expensive and time consuming, the amount of information available is usually poor or not well spatially distributed at the regional scale. In the present study, we investigate the possibility of a semi-automated method used for repeated surveys of monitoring sites. We analyze the applicability of very high spatial resolution hyperspectral data to classify grassland species at the level of individuals. The AISA+ imaging spectrometer mounted on a scaffold was applied to scan 1 m2 grassland plots and assess the impact of four sources of variation on the predicted species cover: (1) the spatial resolution of the scans, (2) the species number and structural diversity, (3) the species cover, and (4) the species functional types (bryophytes, forbs and graminoids). We found that the spatial resolution and the diversity level (mainly structural diversity) were the most important source of variation for the proposed approach. A spatial resolution below 1 cm produced relatively high model performances, while predictions with pixel sizes over that threshold produced non adequate results. Areas with low interspecies overlap reached classification median values of 0.8 (kappa). On the contrary, results were not satisfactory in plots with frequent interspecies overlap in multiple layers. By means of a bootstrapping procedure, we found that areas with shadows and mixed pixels introduce uncertainties into the classification. We conclude that the application of very high resolution hyperspectral remote sensing as a robust alternative or supplement to field surveys is possible for environments with low structural heterogeneity. This study presents the first try of a

  5. Population Size and Decadal Trends of Three Penguin Species Nesting at Signy Island, South Orkney Islands.

    Directory of Open Access Journals (Sweden)

    Michael J Dunn

    Full Text Available We report long-term changes in population size of three species of sympatrically breeding pygoscelid penguins: Adélie (Pygoscelis adeliae, chinstrap (Pygoscelis antarctica and gentoo (Pygoscelis papua ellsworthii over a 38 year period at Signy Island, South Orkney Islands, based on annual counts from selected colonies and decadal all-island systematic counts of occupied nests. Comparing total numbers of breeding pairs over the whole island from 1978/79 to 2015/16 revealed varying fortunes: gentoo penguin pairs increased by 255%, (3.5% per annum, chinstrap penguins declined by 68% (-3.6% per annum and Adélie penguins declined by 42% (-1.5% per annum. The chinstrap population has declined steadily over the last four decades. In contrast, Adélie and gentoo penguins have experienced phases of population increase and decline. Annual surveys of selected chinstrap and Adélie colonies produced similar trends from those revealed by island-wide surveys, allowing total island population trends to be inferred relatively well. However, while the annual colony counts of chinstrap and Adélie penguins showed a trend consistent in direction with the results from all-island surveys, the magnitude of estimated population change was markedly different between colony wide and all island counts. Annual population patterns suggest that pair numbers in the study areas partly reflect immigration and emigration of nesting birds between different parts of the island. Breeding success for all three species remained broadly stable over time in the annually monitored colonies. Breeding success rates in gentoo and chinstrap penguins were strongly correlated, despite the differing trends in population size. This study shows the importance of effective, standardised monitoring to accurately determine long-term population trajectories. Our results indicate significant declines in the Adélie and chinstrap penguin populations at Signy Island over the last five decades, and a

  6. Whales from space: counting southern right whales by satellite.

    Science.gov (United States)

    Fretwell, Peter T; Staniland, Iain J; Forcada, Jaume

    2014-01-01

    We describe a method of identifying and counting whales using very high resolution satellite imagery through the example of southern right whales breeding in part of the Golfo Nuevo, Península Valdés in Argentina. Southern right whales have been extensively hunted over the last 300 years and although numbers have recovered from near extinction in the early 20(th) century, current populations are fragmented and are estimated at only a small fraction of pre-hunting total. Recent extreme right whale calf mortality events at Península Valdés, which constitutes the largest single population, have raised fresh concern for the future of the species. The WorldView2 satellite has a maximum 50 cm resolution and a water penetrating coastal band in the far-blue part of the spectrum that allows it to see deeper into the water column. Using an image covering 113 km², we identified 55 probable whales and 23 other features that are possibly whales, with a further 13 objects that are only detected by the coastal band. Comparison of a number of classification techniques, to automatically detect whale-like objects, showed that a simple thresholding technique of the panchromatic and coastal band delivered the best results. This is the first successful study using satellite imagery to count whales; a pragmatic, transferable method using this rapidly advancing technology that has major implications for future surveys of cetacean populations.

  7. The role of the North American Breeding Bird Survey in conservation

    Science.gov (United States)

    Hudson, Marie-Anne R.; Francis, Charles M.; Campbell, Kate J.; Downes, Constance M.; Smith, Adam C.; Pardieck, Keith L.

    2017-01-01

    The North American Breeding Bird Survey (BBS) was established in 1966 in response to a lack of quantitative data on changes in the populations of many bird species at a continental scale, especially songbirds. The BBS now provides the most reliable regional and continental trends and annual indices of abundance available for >500 bird species. This paper reviews some of the ways in which BBS data have contributed to bird conservation in North America over the past 50 yr, and highlights future program enhancement opportunities. BBS data have contributed to the listing of species under the Canadian Species at Risk Act and, in a few cases, have informed species assessments under the U.S. Endangered Species Act. By raising awareness of population changes, the BBS has helped to motivate bird conservation efforts through the creation of Partners in Flight. BBS data have been used to determine priority species and locations for conservation action at regional and national scales through Bird Conservation Region strategies and Joint Ventures. Data from the BBS have provided the quantitative foundation for North American State of the Birds reports, and have informed the public with regard to environmental health through multiple indicators, such as the Canadian Environmental Sustainability Indicators and the U.S. Environmental Protection Agency's Report on the Environment. BBS data have been analyzed with other data (e.g., environmental, land cover, and demographic) to evaluate potential drivers of population change, which have then informed conservation actions. In a few cases, BBS data have contributed to the evaluation of management actions, including informing the management of Mourning Doves (Zenaida macroura), Wood Ducks (Aix sponsa), and Golden Eagles (Aquila chrysaetos). Improving geographic coverage in northern Canada and in Mexico, improving the analytical approaches required to integrate data from other sources and to address variation in detectability, and

  8. Installation Summaries from the 1996 Survey of Threatened and Endangered Species on Army Lands

    National Research Council Canada - National Science Library

    Schreiber, Eric

    1997-01-01

    ...) species residing on and contiguous to its lands. This report, intended for installation use, provides quick access to basic information from the survey on the Federally Threatened, Endangered, Proposed, and Candidate (TEPC...

  9. Marine species survey of Johnson Atoll, Central Pacific Ocean June 2000 (NODC Accession 0000697)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The marine biota of Johnston atoll was surveyed for nonindigenous species in June, 2000 with observations and collections made by investigators using Scuba. Eleven...

  10. Modelling the Covariance Structure in Marginal Multivariate Count Models

    DEFF Research Database (Denmark)

    Bonat, W. H.; Olivero, J.; Grande-Vega, M.

    2017-01-01

    The main goal of this article is to present a flexible statistical modelling framework to deal with multivariate count data along with longitudinal and repeated measures structures. The covariance structure for each response variable is defined in terms of a covariance link function combined...... be used to indicate whether there was statistical evidence of a decline in blue duikers and other species hunted during the study period. Determining whether observed drops in the number of animals hunted are indeed true is crucial to assess whether species depletion effects are taking place in exploited...... with a matrix linear predictor involving known matrices. In order to specify the joint covariance matrix for the multivariate response vector, the generalized Kronecker product is employed. We take into account the count nature of the data by means of the power dispersion function associated with the Poisson...

  11. The biodiversity and species composition of the spider community of Marion Island, a recent survey (Arachnida: Araneae

    Directory of Open Access Journals (Sweden)

    T.T. Khoza

    2005-12-01

    Full Text Available Marion Island, the larger of the Prince Edward Islands, lies in the sub-Antarctic biogeographic region in the southern Indian Ocean. From previous surveys, four spider species are known from Marion. The last survey was undertaken in 1968. During this study a survey was undertaken over a period of four weeks on the island to determine the present spider diversity and to record information about the habitat preferences and general behaviour of the species present. Three collection methods (active search, Tullgren funnels and pitfall traps were used, and spiders were sampled from six habitat sites. A total of 430 spiders represented by four families were collected, Myro kerguelenesis crozetensis Enderlein, 1909 and M. paucispinosus Berland, 1947 (Desidae, Prinerigone vagans (Audouin, 1826 (Linyphiidae, Cheiracanthium furculatum Karsch, 1879 (Miturgidae and an immature Salticidae. The miturgid and salticid are first records. Neomaso antarticus (Hickman, 1939 (Linyphiidae was absent from samples, confirming that the species might have been an erroneous record.

  12. Marine Species Survey of Johnston Atoll, Central Pacific Ocean, June 2000 (NODC Accession 0000670)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The marine biota of Johnston atoll was surveyed for non-indigenous species in June, 2000 with observations and collections made by investigators using Scuba. Eleven...

  13. Bat Acoustic Survey Report for ORNL: Bat Species Distribution on the Oak Ridge Reservation

    Energy Technology Data Exchange (ETDEWEB)

    McCracken, Kitty [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Giffen, Neil R. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Haines, Angelina [XCEL Engineering Inc., Oak Ridge, TN (United States); Guge, B. J. [Tennessee Technological Univ., Cookeville, TN (United States); Evans, James W. [Tennessee Wildlife Resources Agency (TWRA), Nashville, TN (United States)

    2015-10-01

    This report summarizes results of a three-year acoustic survey of bat species on the US Department of Energy (DOE) Oak Ridge Reservation (ORR) in Oak Ridge, Tennessee. The survey was implemented through the Oak Ridge National Laboratory (ORNL) Natural Resources Management Program and included researchers from the ORNL Environmental Sciences Division and ORNL Facilities and Operations Directorate, Tennessee Wildlife Resources Agency’s ORR wildlife manager, a student from Tennessee Technological University, and a technician contracted through Excel Corp. One hundred and twenty-six sites were surveyed reservation-wide using Wildlife Acoustics SM2+ Acoustic Bat Detectors.

  14. Relationship between high white blood cell count and insulin resistance (HOMA-IR) in Korean children and adolescents: Korean National Health and Nutrition Examination Survey 2008-2010.

    Science.gov (United States)

    Park, J-M; Lee, D-C; Lee, Y-J

    2017-05-01

    Increasing evidence has indicated that insulin resistance is associated with inflammation. However, few studies have investigated the association between white blood cell (WBC) count and insulin resistance, as measured by a homeostasis model assessment of insulin resistance (HOMA-IR) in a general pediatric population. This study aimed to examine the association between WBC count and insulin resistance as measured by HOMA-IR in a nationally representative sample of children and adolescents. In total, 2761 participants (1479 boys and 1282 girls) aged 10-18 years were selected from the 2008-2010 Korean National Health and Nutrition Examination Survey. Insulin resistance was defined as a HOMA-IR value greater than the 90th percentile. The odds ratios and 95% confidence intervals for insulin resistance were determined using multiple logistic regression analysis. The mean values of most cardiometabolic variables tended to increase proportionally with WBC count quartiles. The prevalence of insulin resistance significantly increased in accordance with WBC count quartiles in both boys and girls. Compared to individuals in the lowest WBC count quartile, the odds ratio for insulin resistance for individuals in the highest quartile was 2.84 in boys and 3.20 in girls, after adjusting for age, systolic blood pressure, body mass index, and waist circumference. A higher WBC count was positively associated with an increased risk of insulin resistance in Korean children and adolescents. This study suggests that WBC count could facilitate the identification of children and adolescents with insulin resistance. Copyright © 2017 The Italian Society of Diabetology, the Italian Society for the Study of Atherosclerosis, the Italian Society of Human Nutrition, and the Department of Clinical Medicine and Surgery, Federico II University. Published by Elsevier B.V. All rights reserved.

  15. Targeting Abundant Fish Stocks while Avoiding Overfished Species: Video and Fishing Surveys to Inform Management after Long-Term Fishery Closures

    Science.gov (United States)

    2016-01-01

    Historically, it has been difficult to balance conservation goals and yield objectives when managing multispecies fisheries that include stocks with various vulnerabilities to fishing. As managers try to maximize yield in mixed-stock fisheries, exploitation rates can lead to less productive stocks becoming overfished. In the late 1990s, population declines of several U.S. West Coast groundfish species caused the U.S. Pacific Fishery Management Council to create coast-wide fishery closures, known as Rockfish Conservation Areas, to rebuild overfished species. The fishery closures and other management measures successfully reduced fishing mortality of these species, but constrained fishing opportunities on abundant stocks. Restrictive regulations also caused the unintended consequence of reducing fishery-dependent data available to assess population status of fished species. As stocks rebuild, managers are faced with the challenge of increasing fishing opportunities while minimizing fishing mortality on rebuilding species. We designed a camera system to evaluate fishes in coastal habitats and used experimental gear and fishing techniques paired with video surveys to determine if abundant species could be caught in rocky habitats with minimal catches of co-occurring rebuilding species. We fished a total of 58 days and completed 741 sets with vertical hook-and-line fishing gear. We also conducted 299 video surveys in the same locations where fishing occurred. Comparison of fishing and stereo-video surveys indicated that fishermen could fish with modified hook-and-line gear to catch abundant species while limiting bycatch of rebuilding species. As populations of overfished species continue to recover along the U.S. West Coast, it is important to improve data collection, and video and fishing surveys may be key to assessing species that occur in rocky habitats. PMID:28002499

  16. The Einstein Slew Survey

    Science.gov (United States)

    Elvis, Martin; Plummer, David; Schachter, Jonathan; Fabbiano, G.

    1992-01-01

    A catalog of 819 sources detected in the Einstein IPC Slew Survey of the X-ray sky is presented; 313 of the sources were not previously known as X-ray sources. Typical count rates are 0.1 IPC count/s, roughly equivalent to a flux of 3 x 10 exp -12 ergs/sq cm s. The sources have positional uncertainties of 1.2 arcmin (90 percent confidence) radius, based on a subset of 452 sources identified with previously known pointlike X-ray sources (i.e., extent less than 3 arcmin). Identifications based on a number of existing catalogs of X-ray and optical objects are proposed for 637 of the sources, 78 percent of the survey (within a 3-arcmin error radius) including 133 identifications of new X-ray sources. A public identification data base for the Slew Survey sources will be maintained at CfA, and contributions to this data base are invited.

  17. Effects of sample survey design on the accuracy of classification tree models in species distribution models

    Science.gov (United States)

    Thomas C. Edwards; D. Richard Cutler; Niklaus E. Zimmermann; Linda Geiser; Gretchen G. Moisen

    2006-01-01

    We evaluated the effects of probabilistic (hereafter DESIGN) and non-probabilistic (PURPOSIVE) sample surveys on resultant classification tree models for predicting the presence of four lichen species in the Pacific Northwest, USA. Models derived from both survey forms were assessed using an independent data set (EVALUATION). Measures of accuracy as gauged by...

  18. A survey of Euphorinae (Hymenoptera: Braconidae) of southern Iran, with description of a new species.

    Science.gov (United States)

    Ameri, Ali; Talebi, Ali Asghar; Rakhshani, Ehsan; Beyarslan, Ahmet; Kamali, Karim

    2014-12-23

    A faunistic survey of Euphorinae (Hym., Braconidae) in southern Iran, as well as an updated checklist of the genera and species in Iran, are presented. Sampling was performed using Malaise traps at different locations of Hormozgan province and Qeshm Island in Persian Gulf during 2011-2013. In total, 38 species belonging to 10 genera are listed from Iran. The recorded species belong to the following genera: Allurus Forster, 1862 (two species), Chrysopophthorus Goidanich 1948 (one species), Dinocampus Forster, 1862 (one species), Ecclitura Kokujev, 1902 (one species), Leiophron Nees von Esenbeck, 1819 (10 species), Meteorus Haliday, 1835 (12 species), Perilitus Nees von Esenbeck, 1819 (five species), Syntretus Forster 1862 (three species), Wesmaelia Foerster, 1862 (one species) and Zele Curtis, 1832 (two species). Allurus lituratus (Haliday 1835), Dinocampus coccinellae (Schrank, 1802), Leiophron (Peristenus) grandiceps (Thomson 1892), Meteorus rubens (Nees, 1811) and Wesmaelia petiolata (Wollaston, 1858) are new records for Hormozgan province and Leiophron (Peristenus) grandiceps (Thomson 1892) is recorded for the first time from Iran. In addition, Meteorus breviterebratus Ameri, Talebi & Beyarslan sp. n. is newly described and illustrated. 

  19. Ecosystem studies, endangered species survey - Gibson Dome and Elk Ridge study areas, Paradox Basin, Utah

    International Nuclear Information System (INIS)

    1983-04-01

    This report is published as a product of the National Waste Terminal Storage (NWTS) Program. The objective of this program is the development of terminal waste storage facilities in deep stable geologic formations for high-level nuclear wastes, including spent fuel elements from commercial power reactors and transuranic nuclear waste for which the federal government is responsible. This report is part of the location and site characterization phase and contains threatened and endangered species information for the Gibson Dome and Elk Ridge study areas of the Paradox Region. The threatened and endangered species information was obtained through site surveys designed and implemented by area experts. The site surveys were performed during the period late summer 1981 - spring 1982 in the Gibson Dome and Elk Ridge Study Areas. No threatened or endangered species were identified in either Lavender or Davis canyons. Additional studies at the borehole locations in Beef Basin did identify the nearest occurrence of a species proposed for endangered status (Astragalus monumentalis, a monument milkvetch, member of the legume family). The species was identified approximately 160 to 300 m (500 to 1000 ft) from a hydro testing drill site. Consequently, construction and operation activity should not cause any adverse impacts. This report will be used to satisfy Section 7 requirements of the Endangered Species Act (PL 93-205 as amended) and to allow the United States Fish and Wildlife Service to verify that no protected species are subject to disturbance as the result of project activities occurring in the Gibson Dome and Elk Ridge study areas

  20. Compton suppression gamma-counting: The effect of count rate

    Science.gov (United States)

    Millard, H.T.

    1984-01-01

    Past research has shown that anti-coincidence shielded Ge(Li) spectrometers enhanced the signal-to-background ratios for gamma-photopeaks, which are situated on high Compton backgrounds. Ordinarily, an anti- or non-coincidence spectrum (A) and a coincidence spectrum (C) are collected simultaneously with these systems. To be useful in neutron activation analysis (NAA), the fractions of the photopeak counts routed to the two spectra must be constant from sample to sample to variations must be corrected quantitatively. Most Compton suppression counting has been done at low count rate, but in NAA applications, count rates may be much higher. To operate over the wider dynamic range, the effect of count rate on the ratio of the photopeak counts in the two spectra (A/C) was studied. It was found that as the count rate increases, A/C decreases for gammas not coincident with other gammas from the same decay. For gammas coincident with other gammas, A/C increases to a maximum and then decreases. These results suggest that calibration curves are required to correct photopeak areas so quantitative data can be obtained at higher count rates. ?? 1984.

  1. Errors associated with moose-hunter counts of occupied beaver Castor fiber lodges in Norway

    OpenAIRE

    Parker, Howard; Rosell, Frank; Gustavsen, Per Øyvind

    2002-01-01

    In Norway, Sweden and Finland moose Alces alces hunting teams are often employed to survey occupied beaver (Castor fiber and C. canadensis) lodges while hunting. Results may be used to estimate population density or trend, or for issuing harvest permits. Despite the method's increasing popularity, the errors involved have never been identified. In this study we 1) compare hunting-team counts of occupied lodges with total counts, 2) identify the sources of error between counts and 3) evaluate ...

  2. EcoCount

    Directory of Open Access Journals (Sweden)

    Phillip P. Allen

    2014-05-01

    Full Text Available Techniques that analyze biological remains from sediment sequences for environmental reconstructions are well established and widely used. Yet, identifying, counting, and recording biological evidence such as pollen grains remain a highly skilled, demanding, and time-consuming task. Standard procedure requires the classification and recording of between 300 and 500 pollen grains from each representative sample. Recording the data from a pollen count requires significant effort and focused resources from the palynologist. However, when an adaptation to the recording procedure is utilized, efficiency and time economy improve. We describe EcoCount, which represents a development in environmental data recording procedure. EcoCount is a voice activated fully customizable digital count sheet that allows the investigator to continuously interact with a field of view during the data recording. Continuous viewing allows the palynologist the opportunity to remain engaged with the essential task, identification, for longer, making pollen counting more efficient and economical. EcoCount is a versatile software package that can be used to record a variety of environmental evidence and can be installed onto different computer platforms, making the adoption by users and laboratories simple and inexpensive. The user-friendly format of EcoCount allows any novice to be competent and functional in a very short time.

  3. THE HAWAII SCUBA-2 LENSING CLUSTER SURVEY: NUMBER COUNTS AND SUBMILLIMETER FLUX RATIOS

    Energy Technology Data Exchange (ETDEWEB)

    Hsu, Li-Yen; Cowie, Lennox L.; Barger, Amy J. [Institute of Astronomy, University of Hawaii, 2680 Woodlawn Drive, Honolulu, HI 96822 (United States); Chen, Chian-Chou [Center for Extragalactic Astronomy, Department of Physics, Durham University, South Road, Durham DH1 3LE (United Kingdom); Wang, Wei-Hao [Academia Sinica Institute of Astronomy and Astrophysics, P.O. Box 23-141, Taipei 10617, Taiwan (China)

    2016-09-20

    We present deep number counts at 450 and 850 μ m using the SCUBA-2 camera on the James Clerk Maxwell Telescope. We combine data for six lensing cluster fields and three blank fields to measure the counts over a wide flux range at each wavelength. Thanks to the lensing magnification, our measurements extend to fluxes fainter than 1 mJy and 0.2 mJy at 450 μ m and 850 μ m, respectively. Our combined data highly constrain the faint end of the number counts. Integrating our counts shows that the majority of the extragalactic background light (EBL) at each wavelength is contributed by faint sources with L {sub IR} < 10{sup 12} L {sub ⊙}, corresponding to luminous infrared galaxies (LIRGs) or normal galaxies. By comparing our result with the 500 μ m stacking of K -selected sources from the literature, we conclude that the K -selected LIRGs and normal galaxies still cannot fully account for the EBL that originates from sources with L {sub IR} < 10{sup 12} L {sub ⊙}. This suggests that many faint submillimeter galaxies may not be included in the UV star formation history. We also explore the submillimeter flux ratio between the two bands for our 450 μ m and 850 μ m selected sources. At 850 μ m, we find a clear relation between the flux ratio and the observed flux. This relation can be explained by a redshift evolution, where galaxies at higher redshifts have higher luminosities and star formation rates. In contrast, at 450 μ m, we do not see a clear relation between the flux ratio and the observed flux.

  4. Application of a background-compensated Geiger-Mueller counter to a survey meter

    International Nuclear Information System (INIS)

    Mori, C.; Kumanomido, H.; Watanabe, T.

    1984-01-01

    A background-compensated Geiger-Mueller counter was used as a probe for a GM survey meter to obtain a net count rate of β-rays from a radioactive source in a quick survey. Although a background counting ratio between the two parts in the counter, front and rear, varied somewhat depending on the incident direction of background γ-rays, it was possible to compensate the background counts by subtracting a part of the rear counts, which were background counts, from the front counts, which contained β-ray counts and background counts. Undesirable small pulses generated during the recovering time after a full Geiger discharge were eliminated by an anticoincidence gating method. The survey meter with this counter and a differential ratemeter is useful for obtaining a net count rate of β-rays emitted from a surface radioactive-contamination or from a source being put near the window of the counter with nearly the same accuracy in half the measuring time as compared with conventional GM counters. (orig.)

  5. Seabird species vary in behavioural response to drone census.

    Science.gov (United States)

    Brisson-Curadeau, Émile; Bird, David; Burke, Chantelle; Fifield, David A; Pace, Paul; Sherley, Richard B; Elliott, Kyle H

    2017-12-20

    Unmanned aerial vehicles (UAVs) provide an opportunity to rapidly census wildlife in remote areas while removing some of the hazards. However, wildlife may respond negatively to the UAVs, thereby skewing counts. We surveyed four species of Arctic cliff-nesting seabirds (glaucous gull Larus hyperboreus, Iceland gull Larus glaucoides, common murre Uria aalge and thick-billed murre Uria lomvia) using a UAV and compared censusing techniques to ground photography. An average of 8.5% of murres flew off in response to the UAV, but >99% of those birds were non-breeders. We were unable to detect any impact of the UAV on breeding success of murres, except at a site where aerial predators were abundant and several birds lost their eggs to predators following UAV flights. Furthermore, we found little evidence for habituation by murres to the UAV. Most gulls flew off in response to the UAV, but returned to the nest within five minutes. Counts of gull nests and adults were similar between UAV and ground photography, however the UAV detected up to 52.4% more chicks because chicks were camouflaged and invisible to ground observers. UAVs provide a less hazardous and potentially more accurate method for surveying wildlife. We provide some simple recommendations for their use.

  6. RBC count

    Science.gov (United States)

    ... by kidney disease) RBC destruction ( hemolysis ) due to transfusion, blood vessel injury, or other cause Leukemia Malnutrition Bone ... slight risk any time the skin is broken) Alternative Names Erythrocyte count; Red blood cell count; Anemia - RBC count Images Blood test ...

  7. Occurrence of potentially toxigenic mould species in fresh salads of different kinds of ready-for-use vegetables

    Directory of Open Access Journals (Sweden)

    Kocić-Tanackov Sunčica D.

    2010-01-01

    Full Text Available In the mycological survey of fresh salads of different vegetables, the collected samples were tested for total counts of moulds with special attention paid to the presence of potentially toxigenic species. The survey also included the isolation and the identification of species, as well as the evaluation of mycotoxin biosynthesis ability of potential producers of ochratoxin A (OA and sterigmatocystin (STC. Mould counts ranged from 10.0 to 4.7x102 cfu g-1. The most common moulds found in fresh salads were Cladosporium (42.89%, Penicillium (25.78%, Aspergillus (14.67% and Alternaria (6.89%. C. cladosporioides (40.44%, followed by A. niger (10.22%, P. aurantiogriseum (7.55%, A. alternata (6.89% and Fusarium spp. (3.11% were the most dominating species. Other species were represented with 2.22% (Eurotium spp., 1.56% (Botrytis spp., 0.67% (Phoma spp., 0.44% (Geotrichum spp., Mucor spp., Phialophora spp. and 0.22% (Emericella spp., Paecilomyces spp., Trichoderma spp., Xeromyces spp.. Twenty-two of 41 identified mould species were potentially toxigenic, which accounted for 46.18% of the total isolated population. The most frequent were the potential producers of ochratoxin A (17.77%. Potential producers of moniliformin were isolated in 3.11% of samples, while producers of fumonisin and STC were found in 2.67% and 2.44% of samples, respectively. The tested isolates of OA producers did not demonstrate the ability to biosynthetise this mycotoxins, but two out of five isolates of A. versicolor were found to biosynthesise STC in doses of 109.2 ng mL-1 and 56.3 ng mL-1. The obtained results indicate that such products may threaten human health, considering that isolated species were potentially toxigenic, while isolates of A. versicolor also biosynthesised STS.

  8. Ichthyofauna of the Kubo, Tochikura, and Ichinono river systems (Kitakami River drainage, northern Japan), with a comparison of predicted and surveyed species richness

    Science.gov (United States)

    Nakae, Masanori; Senou, Hiroshi

    2014-01-01

    Abstract The potential fish species pool of the Kubo, Tochikura, and Ichinono river systems (tributaries of the Iwai River, Kitakami River drainage), Iwate Prefecture, northern Japan, was compared with the observed ichthyofauna by using historical records and new field surveys. Based on the literature survey, the potential species pool comprised 24 species/subspecies but only 20, including 7 non-native taxa, were recorded during the fieldwork. The absence during the survey of 11 species/subspecies from the potential species pool suggested either that sampling effort was insufficient, or that accurate determination of the potential species pool was hindered by lack of biogeographic data and ecological data related to the habitat use of the species. With respect to freshwater fish conservation in the area, Lethenteron reissneri, Carassius auratus buergeri, Pseudorasbora pumila, Tachysurus tokiensis, Oryzias latipes, and Cottus nozawae are regarded as priority species, and Cyprinus rubrofuscus, Pseudorasbora parva, and Micropterus salmoides as targets for removal. PMID:25425932

  9. Short communication: Environmental mastitis pathogen counts in freestalls bedded with composted and fresh recycled manure solids.

    Science.gov (United States)

    Cole, K J; Hogan, J S

    2016-02-01

    An experiment was conducted to compare bacterial counts of environmental mastitis pathogens in composted recycled manure solids bedding with those in fresh recycled manure solids. Eighteen Holstein cows were housed in 1 pen with 18 stalls. One row of 9 freestalls included mattresses and was bedded weekly with composted recycled manure solids. The second row of 9 freestalls included mattresses and was bedded weekly with fresh recycled manure solids. The back one-third of stalls toward the alleyway was covered in 25 to 50 mm of bedding. Samples were taken from the back one-third of 4 stalls for both treatments on d 0, 1, 2, and 6 of each week. After 3 wk, bedding treatments were switched between rows, making the total duration 6 wk. Mean total gram-negative bacterial counts were approximately 0.5 log10 cfu/g of dry matter lower in the composted recycled manure solids on d 0 compared with fresh recycled manure solids. Klebsiella species, coliform, and Streptococcus species counts were at least 1.0 log10 cfu/g of dry matter lower in composted compared with fresh recycled manure solids on d 0. Only gram-negative bacterial counts on d 1 were reduced in composted recycled manure solids compared with fresh recycled manure solids. Differences were not observed between treatments in gram-negative bacterial, coliform, Klebsiella species, or Streptococcus species counts on d 2 and 6. Ash content was higher in composted recycled manure solids compared with fresh recycled manure solids on d 0, 1, 2, and 6. Despite the increase in ash after composting, bacterial counts of mastitis pathogens in composted recycled manure solids were comparable with those in fresh recycled manure when used as freestall bedding. Copyright © 2016 American Dairy Science Association. Published by Elsevier Inc. All rights reserved.

  10. Using habitat suitability models to target invasive plant species surveys.

    Science.gov (United States)

    Crall, Alycia W; Jarnevich, Catherine S; Panke, Brendon; Young, Nick; Renz, Mark; Morisette, Jeffrey

    2013-01-01

    Managers need new tools for detecting the movement and spread of nonnative, invasive species. Habitat suitability models are a popular tool for mapping the potential distribution of current invaders, but the ability of these models to prioritize monitoring efforts has not been tested in the field. We tested the utility of an iterative sampling design (i.e., models based on field observations used to guide subsequent field data collection to improve the model), hypothesizing that model performance would increase when new data were gathered from targeted sampling using criteria based on the initial model results. We also tested the ability of habitat suitability models to predict the spread of invasive species, hypothesizing that models would accurately predict occurrences in the field, and that the use of targeted sampling would detect more species with less sampling effort than a nontargeted approach. We tested these hypotheses on two species at the state scale (Centaurea stoebe and Pastinaca sativa) in Wisconsin (USA), and one genus at the regional scale (Tamarix) in the western United States. These initial data were merged with environmental data at 30-m2 resolution for Wisconsin and 1-km2 resolution for the western United States to produce our first iteration models. We stratified these initial models to target field sampling and compared our models and success at detecting our species of interest to other surveys being conducted during the same field season (i.e., nontargeted sampling). Although more data did not always improve our models based on correct classification rate (CCR), sensitivity, specificity, kappa, or area under the curve (AUC), our models generated from targeted sampling data always performed better than models generated from nontargeted data. For Wisconsin species, the model described actual locations in the field fairly well (kappa = 0.51, 0.19, P guiding invasive species monitoring, and we support the use of an iterative sampling design for

  11. Pacific Reef Assessment and Monitoring Program: Rapid Ecological Assessments of Fish Large-Area Stationary Point Count Surveys (SPC) in the Pacific Ocean from 2000-09-09 to 2007-06-08 (NCEI Accession 0162466)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The large-area stationary point count (SPC) method is used to conduct reef fish surveys in the Hawaiian and Mariana Archipelagos, American Samoa, and the Pacific...

  12. CASA-Mot technology: how results are affected by the frame rate and counting chamber.

    Science.gov (United States)

    Bompart, Daznia; García-Molina, Almudena; Valverde, Anthony; Caldeira, Carina; Yániz, Jesús; Núñez de Murga, Manuel; Soler, Carles

    2018-04-04

    For over 30 years, CASA-Mot technology has been used for kinematic analysis of sperm motility in different mammalian species, but insufficient attention has been paid to the technical limitations of commercial computer-aided sperm analysis (CASA) systems. Counting chamber type and frame rate are two of the most important aspects to be taken into account. Counting chambers can be disposable or reusable, with different depths. In human semen analysis, reusable chambers with a depth of 10µm are the most frequently used, whereas for most farm animal species it is more common to use disposable chambers with a depth of 20µm . The frame rate was previously limited by the hardware, although changes in the number of images collected could lead to significant variations in some kinematic parameters, mainly in curvilinear velocity (VCL). A frame rate of 60 frames s-1 is widely considered to be the minimum necessary for satisfactory results. However, the frame rate is species specific and must be defined in each experimental condition. In conclusion, we show that the optimal combination of frame rate and counting chamber type and depth should be defined for each species and experimental condition in order to obtain reliable results.

  13. Counting statistics in low level radioactivity measurements fluctuating counting efficiency

    International Nuclear Information System (INIS)

    Pazdur, M.F.

    1976-01-01

    A divergence between the probability distribution of the number of nuclear disintegrations and the number of observed counts, caused by counting efficiency fluctuation, is discussed. The negative binominal distribution is proposed to describe the probability distribution of the number of counts, instead of Poisson distribution, which is assumed to hold for the number of nuclear disintegrations only. From actual measurements the r.m.s. amplitude of counting efficiency fluctuation is estimated. Some consequences of counting efficiency fluctuation are investigated and the corresponding formulae are derived: (1) for detection limit as a function of the number of partial measurements and the relative amplitude of counting efficiency fluctuation, and (2) for optimum allocation of the number of partial measurements between sample and background. (author)

  14. A method for estimating abundance of mobile populations using telemetry and counts of unmarked animals

    Science.gov (United States)

    Clement, Matthew; O'Keefe, Joy M; Walters, Brianne

    2015-01-01

    While numerous methods exist for estimating abundance when detection is imperfect, these methods may not be appropriate due to logistical difficulties or unrealistic assumptions. In particular, if highly mobile taxa are frequently absent from survey locations, methods that estimate a probability of detection conditional on presence will generate biased abundance estimates. Here, we propose a new estimator for estimating abundance of mobile populations using telemetry and counts of unmarked animals. The estimator assumes that the target population conforms to a fission-fusion grouping pattern, in which the population is divided into groups that frequently change in size and composition. If assumptions are met, it is not necessary to locate all groups in the population to estimate abundance. We derive an estimator, perform a simulation study, conduct a power analysis, and apply the method to field data. The simulation study confirmed that our estimator is asymptotically unbiased with low bias, narrow confidence intervals, and good coverage, given a modest survey effort. The power analysis provided initial guidance on survey effort. When applied to small data sets obtained by radio-tracking Indiana bats, abundance estimates were reasonable, although imprecise. The proposed method has the potential to improve abundance estimates for mobile species that have a fission-fusion social structure, such as Indiana bats, because it does not condition detection on presence at survey locations and because it avoids certain restrictive assumptions.

  15. Pairing call-response surveys and distance sampling for a mammalian carnivore

    Science.gov (United States)

    Hansen, Sara J. K.; Frair, Jacqueline L.; Underwood, Harold B.; Gibbs, James P.

    2015-01-01

    Density estimates accounting for differential animal detectability are difficult to acquire for wide-ranging and elusive species such as mammalian carnivores. Pairing distance sampling with call-response surveys may provide an efficient means of tracking changes in populations of coyotes (Canis latrans), a species of particular interest in the eastern United States. Blind field trials in rural New York State indicated 119-m linear error for triangulated coyote calls, and a 1.8-km distance threshold for call detectability, which was sufficient to estimate a detection function with precision using distance sampling. We conducted statewide road-based surveys with sampling locations spaced ≥6 km apart from June to August 2010. Each detected call (be it a single or group) counted as a single object, representing 1 territorial pair, because of uncertainty in the number of vocalizing animals. From 524 survey points and 75 detections, we estimated the probability of detecting a calling coyote to be 0.17 ± 0.02 SE, yielding a detection-corrected index of 0.75 pairs/10 km2 (95% CI: 0.52–1.1, 18.5% CV) for a minimum of 8,133 pairs across rural New York State. Importantly, we consider this an index rather than true estimate of abundance given the unknown probability of coyote availability for detection during our surveys. Even so, pairing distance sampling with call-response surveys provided a novel, efficient, and noninvasive means of monitoring populations of wide-ranging and elusive, albeit reliably vocal, mammalian carnivores. Our approach offers an effective new means of tracking species like coyotes, one that is readily extendable to other species and geographic extents, provided key assumptions of distance sampling are met.

  16. Determining random counts in liquid scintillation counting

    International Nuclear Information System (INIS)

    Horrocks, D.L.

    1979-01-01

    During measurements involving coincidence counting techniques, errors can arise due to the detection of chance or random coincidences in the multiple detectors used. A method and the electronic circuits necessary are here described for eliminating this source of error in liquid scintillation detectors used in coincidence counting. (UK)

  17. Variations in pollen counts largely explained by climate and weather

    Science.gov (United States)

    Jung, Stephan; Damialis, Athanasios; Estrella, Nicole; Jochner, Susanne; Menzel, Annette

    2017-04-01

    The interaction between climate and vegetation is well studied within phenology. Climatic / weather conditions affect e.g. flowering date, length of vegetation period, start and end of the season and the plant growth. Besides phenological stages also pollen counts can be used to investigate the interaction between climate and vegetation. Pollen emission and distribution is directly influenced by temperature, wind speed, wind direction and humidity/precipitation. The objective of this project is to study daily/sub daily variations in pollen counts of woody and herbaceous plant species along an altitudinal gradient with different climatic conditions during the vegetation period. Measurements of pollen were carried out with three volumetric pollen traps installed at the altitudes 450 m a.s.l (Freising), 700 m a.s.l (Garmisch-Partenkirchen), and 2700 m a.s.l (Schneefernerhaus near Zugspitze) representing gradient from north of Munich towards the highest mountain of Germany. Airborne pollen concentrations were recorded during the years 2014-2015. The altitudinal range of these three stations accompanied by different microclimates ("space for time approach") can be used as proxy for climate change and to assess its impact on pollen counts and thus allergenic risk for human health. For example the pollen season is shortened and pollen amount is reduced at higher sites. For detailed investigations pollen of the species Plantago, Quercus, Poaceae, Cupressaceae, Cyperacea, Betula and Platanus were chosen, because those are found in appropriate quantities. In general, pollen captured in the pollen traps to a certain extent has its origin from the immediate surrounding. Thus, it mirrors local species distribution. But furthermore the distance of pollen transport is also based on (micro-) climatic conditions, land cover and topography. The pollen trap shortly below the summit of Zugspitze (Schneefernerhaus) has an alpine environment without vegetation nearby. Therefore, this

  18. Development of a stained cell nuclei counting system

    Science.gov (United States)

    Timilsina, Niranjan; Moffatt, Christopher; Okada, Kazunori

    2011-03-01

    This paper presents a novel cell counting system which exploits the Fast Radial Symmetry Transformation (FRST) algorithm [1]. The driving force behind our system is a research on neurogenesis in the intact nervous system of Manduca Sexta or the Tobacco Hornworm, which was being studied to assess the impact of age, food and environment on neurogenesis. The varying thickness of the intact nervous system in this species often yields images with inhomogeneous background and inconsistencies such as varying illumination, variable contrast, and irregular cell size. For automated counting, such inhomogeneity and inconsistencies must be addressed, which no existing work has done successfully. Thus, our goal is to devise a new cell counting algorithm for the images with non-uniform background. Our solution adapts FRST: a computer vision algorithm which is designed to detect points of interest on circular regions such as human eyes. This algorithm enhances the occurrences of the stained-cell nuclei in 2D digital images and negates the problems caused by their inhomogeneity. Besides FRST, our algorithm employs standard image processing methods, such as mathematical morphology and connected component analysis. We have evaluated the developed cell counting system with fourteen digital images of Tobacco Hornworm's nervous system collected for this study with ground-truth cell counts by biology experts. Experimental results show that our system has a minimum error of 1.41% and mean error of 16.68% which is at least forty-four percent better than the algorithm without FRST.

  19. Radiation counting statistics

    Energy Technology Data Exchange (ETDEWEB)

    Suh, M. Y.; Jee, K. Y.; Park, K. K.; Park, Y. J.; Kim, W. H

    1999-08-01

    This report is intended to describe the statistical methods necessary to design and conduct radiation counting experiments and evaluate the data from the experiment. The methods are described for the evaluation of the stability of a counting system and the estimation of the precision of counting data by application of probability distribution models. The methods for the determination of the uncertainty of the results calculated from the number of counts, as well as various statistical methods for the reduction of counting error are also described. (Author). 11 refs., 8 tabs., 8 figs.

  20. Radiation counting statistics

    Energy Technology Data Exchange (ETDEWEB)

    Suh, M. Y.; Jee, K. Y.; Park, K. K. [Korea Atomic Energy Research Institute, Taejon (Korea)

    1999-08-01

    This report is intended to describe the statistical methods necessary to design and conduct radiation counting experiments and evaluate the data from the experiments. The methods are described for the evaluation of the stability of a counting system and the estimation of the precision of counting data by application of probability distribution models. The methods for the determination of the uncertainty of the results calculated from the number of counts, as well as various statistical methods for the reduction of counting error are also described. 11 refs., 6 figs., 8 tabs. (Author)

  1. Radiation counting statistics

    International Nuclear Information System (INIS)

    Suh, M. Y.; Jee, K. Y.; Park, K. K.; Park, Y. J.; Kim, W. H.

    1999-08-01

    This report is intended to describe the statistical methods necessary to design and conduct radiation counting experiments and evaluate the data from the experiment. The methods are described for the evaluation of the stability of a counting system and the estimation of the precision of counting data by application of probability distribution models. The methods for the determination of the uncertainty of the results calculated from the number of counts, as well as various statistical methods for the reduction of counting error are also described. (Author). 11 refs., 8 tabs., 8 figs

  2. Evaluating call-count procedures for measuring local mourning dove populations

    Science.gov (United States)

    Armbruster, M.J.; Baskett, T.S.; Goforth, W.R.; Sadler, K.C.

    1978-01-01

    Seventy-nine mourning dove call-count runs were made on a 32-km route in Osage County, Missouri, May 1-August 31, 1971 and 1972. Circular study areas, each 61 ha, surrounding stop numbers 4 and 5, were delineated for intensive nest searches and population estimates. Tallies of cooing male doves along the entire call-count route were quite variable in repeated runs, fluctuating as much as 50 percent on consecutive days. There were no consistent relationships between numbers of cooing males tallied at stops 4 and 5 and the numbers of current nests or doves estimated to be present in the surrounding study areas. We doubt the suitability of call-count procedures to estimate precisely the densities of breeding pairs, nests or production of doves on small areas. Our findings do not dispute the usefulness of the national call-count survey as an index to relative densities of mourning doves during the breeding season over large portions of the United States, or as an index to annual population trends.

  3. Results of radioactivity surveys in Miyagi Prefecture

    International Nuclear Information System (INIS)

    1983-01-01

    The results of radioactivity surveys carried out in Miyagi Prefecture in fiscal 1981 (from April, 1981, to March, 1982), entrusted by the Science and Technology Agency, are presented in tables: total β radioactivity in rainwater, in rainwater and dust collected by large basins, in daily foods, in land water, in dairy products and vegetables, in marine products and in soil, 131 I nuclide in cow's milk, air γ-ray dose rate by survey meters, and air γ-ray counting, rate by a monitoring post were examined. The total β radioactivity was measured by a GM counting apparatus with an automatic sample changer, the nuclide analysis by a NaI(Tl) scintillation spectrometer, the air γ-ray dose rate by a NaI(Tl) scintillation survey meter, and the γ-ray counting rate by a NaI(Tl) scintillation type monitoring post. (Mori, K.)

  4. Citizen Science: The First Peninsular Malaysia Butterfly Count

    Science.gov (United States)

    Jisming-See, Shi-Wei; Brandon-Mong, Guo-Jie; Lim, Aik-Hean; Lim, Voon-Ching; Lee, Ping-Shin; Sing, Kong-Wah

    2015-01-01

    Abstract Background Over the past 50 years, Southeast Asia has suffered the greatest losses of biodiversity of any tropical region in the world. Malaysia is a biodiversity hotspot in the heart of Southeast Asia with roughly the same number of mammal species, three times the number of butterfly species, but only 4% of the land area of Australia. Consequently, in Malaysia, there is an urgent need for biodiversity monitoring and also public engagement with wildlife to raise awareness of biodiversity loss. Citizen science is “on the rise” globally and can make valuable contributions to long-term biodiversity monitoring, but perhaps more importantly, involving the general public in science projects can raise public awareness and promote engagement. Butterflies are often the focus of citizen science projects due to their charisma and familiarity and are particularly valuable “ambassadors” of biodiversity conservation for public outreach. New information Here we present the data from our citizen science project, the first “Peninsular Malaysia Butterfly Count”. Participants were asked to go outdoors on June 6, 2015, and (non-lethally) sample butterfly legs for species identification through DNA barcoding. Fifty-seven citizens responded to our adverts and registered to take part in the butterfly count with many registering on behalf of groups. Collectively the participants sampled 220 butterfly legs from 26 mostly urban and suburban sampling localities. These included our university campus, a highschool, several public parks and private residences. On the basis of 192 usable DNA barcodes, 43 species were sampled by the participants. The most sampled species was Appias olferna, followed by Junonia orithya and Zizina otis. Twenty-two species were only sampled once, five were only sampled twice, and four were only sampled three times. Three DNA barcodes could not be assigned species names. The sampled butterflies revealed that widely distributed, cosmopolitan

  5. PREDICTIONS FOR ULTRA-DEEP RADIO COUNTS OF STAR-FORMING GALAXIES

    Energy Technology Data Exchange (ETDEWEB)

    Mancuso, Claudia; Lapi, Andrea; De Zotti, Gianfranco; Bressan, Alessandro; Perrotta, Francesca; Danese, Luigi [Astrophysics Sector, SISSA, Via Bonomea 265, I-34136 Trieste (Italy); Cai, Zhen-Yi [CAS Key Laboratory for Research in Galaxies and Cosmology, Department of Astronomy, University of Science and Technology of China, Hefei, Anhui 230026 (China); Negrello, Mattia; Bonato, Matteo, E-mail: cmancuso@sissa.it [INAF—Osservatorio Astronomico di Padova, Vicolo dell’Osservatorio 5, I-35122 Padova (Italy)

    2015-09-01

    We have worked outty predictions for the radio counts of star-forming galaxies down to nJy levels, along with redshift distributions down to the detection limits of the phase 1 Square Kilometer Array MID telescope (SKA1-MID) and of its precursors. Such predictions were obtained by coupling epoch-dependent star formation rate (SFR) functions with relations between SFR and radio (synchrotron and free–free) emission. The SFR functions were derived taking into account both the dust-obscured and the unobscured star formation, by combining far-infrared, ultraviolet, and Hα luminosity functions up to high redshifts. We have also revisited the South Pole Telescope counts of dusty galaxies at 95 GHz, performing a detailed analysis of the Spectral Energy Distributions. Our results show that the deepest SKA1-MID surveys will detect high-z galaxies with SFRs two orders of magnitude lower compared to Herschel surveys. The highest redshift tails of the distributions at the detection limits of planned SKA1-MID surveys comprise a substantial fraction of strongly lensed galaxies. We predict that a survey down to 0.25 μJy at 1.4 GHz will detect about 1200 strongly lensed galaxies per square degree, at redshifts of up to 10. For about 30% of them the SKA1-MID will detect at least 2 images. The SKA1-MID will thus provide a comprehensive view of the star formation history throughout the re-ionization epoch, unaffected by dust extinction. We have also provided specific predictions for the EMU/ASKAP and MIGHTEE/MeerKAT surveys.

  6. Bonding and electron counting in hyper-closo metalloboranes and metallocarbaboranes

    International Nuclear Information System (INIS)

    Johnston, R.L

    1991-01-01

    Since the characterisation of the first hyper-or iso-closo metalloboranes and metallocarbaboranes there has been considerable debate regarding the most appropriate formal electron counting scheme for these species. While they clearly show deviations from the usual geometries as a result of a formal electron deficiency, there is some disagreement as to whether the electron deficiency should be considered on the metal centre (iso-closo) or associated with the delocalised cluster bonding (hyper-closo). We review the structural evidence and some of the theoretical contributions to the debate, and describe MO calculations which address the validity of the alternative electron counting schemes. Although we find that the hyper-closo model is more generally applicable, the structures show such a diversity of bonding characteristics that any simple attempt to generalise electron counting rules is unlikely to be applicable to all known examples. 53 refs

  7. Effect of species rarity on the accuracy of species distribution models for reptiles and amphibians in southern California

    Science.gov (United States)

    Franklin, J.; Wejnert, K.E.; Hathaway, S.A.; Rochester, C.J.; Fisher, R.N.

    2009-01-01

    Aim: Several studies have found that more accurate predictive models of species' occurrences can be developed for rarer species; however, one recent study found the relationship between range size and model performance to be an artefact of sample prevalence, that is, the proportion of presence versus absence observations in the data used to train the model. We examined the effect of model type, species rarity class, species' survey frequency, detectability and manipulated sample prevalence on the accuracy of distribution models developed for 30 reptile and amphibian species. Location: Coastal southern California, USA. Methods: Classification trees, generalized additive models and generalized linear models were developed using species presence and absence data from 420 locations. Model performance was measured using sensitivity, specificity and the area under the curve (AUC) of the receiver-operating characteristic (ROC) plot based on twofold cross-validation, or on bootstrapping. Predictors included climate, terrain, soil and vegetation variables. Species were assigned to rarity classes by experts. The data were sampled to generate subsets with varying ratios of presences and absences to test for the effect of sample prevalence. Join count statistics were used to characterize spatial dependence in the prediction errors. Results: Species in classes with higher rarity were more accurately predicted than common species, and this effect was independent of sample prevalence. Although positive spatial autocorrelation remained in the prediction errors, it was weaker than was observed in the species occurrence data. The differences in accuracy among model types were slight. Main conclusions: Using a variety of modelling methods, more accurate species distribution models were developed for rarer than for more common species. This was presumably because it is difficult to discriminate suitable from unsuitable habitat for habitat generalists, and not as an artefact of the

  8. Detectability in Audio-Visual Surveys of Tropical Rainforest Birds: The Influence of Species, Weather and Habitat Characteristics

    Science.gov (United States)

    Anderson, Alexander S.; Marques, Tiago A.; Shoo, Luke P.; Williams, Stephen E.

    2015-01-01

    Indices of relative abundance do not control for variation in detectability, which can bias density estimates such that ecological processes are difficult to infer. Distance sampling methods can be used to correct for detectability, but in rainforest, where dense vegetation and diverse assemblages complicate sampling, information is lacking about factors affecting their application. Rare species present an additional challenge, as data may be too sparse to fit detection functions. We present analyses of distance sampling data collected for a diverse tropical rainforest bird assemblage across broad elevational and latitudinal gradients in North Queensland, Australia. Using audio and visual detections, we assessed the influence of various factors on Effective Strip Width (ESW), an intuitively useful parameter, since it can be used to calculate an estimate of density from count data. Body size and species exerted the most important influence on ESW, with larger species detectable over greater distances than smaller species. Secondarily, wet weather and high shrub density decreased ESW for most species. ESW for several species also differed between summer and winter, possibly due to seasonal differences in calling behavior. Distance sampling proved logistically intensive in these environments, but large differences in ESW between species confirmed the need to correct for detection probability to obtain accurate density estimates. Our results suggest an evidence-based approach to controlling for factors influencing detectability, and avenues for further work including modeling detectability as a function of species characteristics such as body size and call characteristics. Such models may be useful in developing a calibration for non-distance sampling data and for estimating detectability of rare species. PMID:26110433

  9. Counting carbohydrates

    Science.gov (United States)

    Carb counting; Carbohydrate-controlled diet; Diabetic diet; Diabetes-counting carbohydrates ... Many foods contain carbohydrates (carbs), including: Fruit and fruit juice Cereal, bread, pasta, and rice Milk and milk products, soy milk Beans, legumes, ...

  10. Comparison and assessment of aerial and ground estimates of waterbird colonies

    Science.gov (United States)

    Green, M.C.; Luent, M.C.; Michot, T.C.; Jeske, C.W.; Leberg, P.L.

    2008-01-01

    Aerial surveys are often used to quantify sizes of waterbird colonies; however, these surveys would benefit from a better understanding of associated biases. We compared estimates of breeding pairs of waterbirds, in colonies across southern Louisiana, USA, made from the ground, fixed-wing aircraft, and a helicopter. We used a marked-subsample method for ground-counting colonies to obtain estimates of error and visibility bias. We made comparisons over 2 sampling periods: 1) surveys conducted on the same colonies using all 3 methods during 3-11 May 2005 and 2) an expanded fixed-wing and ground-survey comparison conducted over 4 periods (May and Jun, 2004-2005). Estimates from fixed-wing aircraft were approximately 65% higher than those from ground counts for overall estimated number of breeding pairs and for both dark and white-plumaged species. The coefficient of determination between estimates based on ground and fixed-wing aircraft was ???0.40 for most species, and based on the assumption that estimates from the ground were closer to the true count, fixed-wing aerial surveys appeared to overestimate numbers of nesting birds of some species; this bias often increased with the size of the colony. Unlike estimates from fixed-wing aircraft, numbers of nesting pairs made from ground and helicopter surveys were very similar for all species we observed. Ground counts by one observer resulted in underestimated number of breeding pairs by 20% on average. The marked-subsample method provided an estimate of the number of missed nests as well as an estimate of precision. These estimates represent a major advantage of marked-subsample ground counts over aerial methods; however, ground counts are difficult in large or remote colonies. Helicopter surveys and ground counts provide less biased, more precise estimates of breeding pairs than do surveys made from fixed-wing aircraft. We recommend managers employ ground counts using double observers for surveying waterbird colonies

  11. Repeatability of differential goat bulk milk culture and associations with somatic cell count, total bacterial count, and standard plate count

    OpenAIRE

    Koop, G.; Dik, N.; Nielen, M.; Lipman, L.J.A.

    2010-01-01

    The aims of this study were to assess how different bacterial groups in bulk milk are related to bulk milk somatic cell count (SCC), bulk milk total bacterial count (TBC), and bulk milk standard plate count (SPC) and to measure the repeatability of bulk milk culturing. On 53 Dutch dairy goat farms, 3 bulk milk samples were collected at intervals of 2 wk. The samples were cultured for SPC, coliform count, and staphylococcal count and for the presence of Staphylococcus aureus. Furthermore, SCC ...

  12. Radiation measurement practice for understanding statistical fluctuation of radiation count using natural radiation sources

    International Nuclear Information System (INIS)

    Kawano, Takao

    2014-01-01

    It is known that radiation is detected at random and the radiation counts fluctuate statistically. In the present study, a radiation measurement experiment was performed to understand the randomness and statistical fluctuation of radiation counts. In the measurement, three natural radiation sources were used. The sources were fabricated from potassium chloride chemicals, chemical fertilizers and kelps. These materials contain naturally occurring potassium-40 that is a radionuclide. From high schools, junior high schools and elementary schools, nine teachers participated to the radiation measurement experiment. Each participant measured the 1-min integration counts of radiation five times using GM survey meters, and 45 sets of data were obtained for the respective natural radiation sources. It was found that the frequency of occurrence of radiation counts was distributed according to a Gaussian distribution curve, although the obtained 45 data sets of radiation counts superficially looked to be fluctuating meaninglessly. (author)

  13. A novel species of Euspondylus (Squamata: Gymnophthalmidae) from the Andes Mountains of central Peru.

    Science.gov (United States)

    Doan, Tiffany M; Adams, Grant

    2015-10-21

    The South American gymnophthalmid genus Euspondylus is distributed from Venezuela through Peru, with its highest diversity occurring in Peru. Euspondylus paxcorpus sp. nov. is a new species from Junín, Peru possessing prefrontal scales and represented by 60 specimens. The new species differs from all other species by the combination of four supraoculars with supraocular/supraciliary fusion, 5-7 occipitals, a single palpebral scale, five supralabials and infralabials, quadrangular dorsal scales with low keels arranged in transverse series only, 40-45 in a longitudinal count and 22-28 in a transverse count, 12 rows of ventrals in a transverse count and 23-25 in a longitudinal count, and no sexual dimorphism in coloration. The discovery of E. paxcorpus increases the known number of Euspondylus species to 13. Because the coloration patterns of the specimens were greatly different after preservation in alcohol, caution should be used when identifying Euspondylus species from museum specimens.

  14. Measurement of antral follicle count in patients undergoing in vitro fertilization treatment: results of a worldwide web-based survey.

    Science.gov (United States)

    Christianson, Mindy S; Shoham, Gon; Tobler, Kyle J; Zhao, Yulian; Cordeiro, Christina N; Leong, Milton; Shoham, Zeev

    2015-10-01

    The purpose of the present study was to identify trends in the therapeutic approaches used to measure antral follicle count (AFC) in patients undergoing in vitro fertilization (IVF) treatment worldwide. A retrospective evaluation utilizing the results of a web-based survey, IVF-Worldwide ( www.IVF-Worldwide.com ), was performed. Responses from 796 centers representing 593,200 cycles were evaluated. The majority of respondents (71.2 %) considered antral follicle count as a mandatory part of their practice with most (69.0 %) measuring AFC in the follicular phase. Most respondents (89.7 %) reported that they would modify the IVF stimulation protocol based on the AFC. There was considerable variation regarding a limit for the number of antral follicles required to initiate an IVF cycle with 46.1 % designating three antral follicles as their limit, 39.9 % selecting either four or five follicles as their limit, and 14.0 % reporting a higher cutoff criteria. With respect to antral follicle size, 61.5 % included follicles ranging between 2 and 10 mm in the AFC. When asked to identify the best predictor of ovarian hyper-response during IVF cycles, AFC was selected most frequently (49.4 %), followed by anti-Mullerian hormone level (42.7 %). Age was selected as the best predictor of ongoing pregnancy rate in 81.7 % of respondents. While a large proportion of respondents utilized AFC as part of their daily practice and modified IVF protocol based on the measurement, the majority did not consider AFC as the best predictor of ongoing pregnancy rate.

  15. Distribution of non-aureus staphylococci species in udder quarters with low and high somatic cell count, and clinical mastitis.

    Science.gov (United States)

    Condas, Larissa A Z; De Buck, Jeroen; Nobrega, Diego B; Carson, Domonique A; Roy, Jean-Philippe; Keefe, Greg P; DeVries, Trevor J; Middleton, John R; Dufour, Simon; Barkema, Herman W

    2017-07-01

    The effect of non-aureus staphylococci (NAS) in bovine mammary health is controversial. Overall, NAS intramammary infections (IMI) increase somatic cell count (SCC), with an effect categorized as mild, mostly causing subclinical or mild to moderate clinical mastitis. However, based on recent studies, specific NAS may affect the udder more severely. Some of these apparent discrepancies could be attributed to the large number of species that compose the NAS group. The objectives of this study were to determine (1) the SCC of quarters infected by individual NAS species compared with NAS as a group, culture-negative, and major pathogen-infected quarters; (2) the distribution of NAS species isolated from quarters with low SCC (mastitis; and (3) the prevalence of NAS species across quarters with low and high SCC. A total of 5,507 NAS isolates, 3,561 from low SCC quarters, 1,873 from high SCC quarters, and 73 from clinical mastitis cases, were obtained from the National Cohort of Dairy Farms of the Canadian Bovine Mastitis Research Network. Of quarters with low SCC, high SCC, or clinical mastitis, 7.6, 18.5, and 4.3% were NAS positive, respectively. The effect of NAS IMI on SCC was estimated using mixed-effect linear regression; prevalence of NAS IMI was estimated using Bayesian analyses. Mean SCC of NAS-positive quarters was 70,000 cells/mL, which was higher than culture-negative quarters (32,000 cells/mL) and lower than major pathogen-positive quarters (129,000 to 183,000 cells/mL). Compared with other NAS species, SCC was highest in quarters positive for Staphylococcus capitis, Staphylococcus gallinarum, Staphylococcus hyicus, Staphylococcus agnetis, or Staphylococcus simulans. In NAS-positive quarters, Staphylococcus xylosus (12.6%), Staphylococcus cohnii (3.1%), and Staphylococcus equorum (0.6%) were more frequently isolated from quarters with low SCC than other NAS species, whereas Staphylococcus sciuri (14%) was most frequently isolated from clinical mastitis cases

  16. Atlantic Protected Species Assessment Aerial Surveys

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — These data sets include a compilation of aerial line-transect surveys conducted over continental shelf waters of the southeastern U.S. Surveys have been conducted...

  17. Effect of strategic deworming of village cattle in Uganda with moxidectin pour-on on faecal egg count and pasture larval counts : short communication

    Directory of Open Access Journals (Sweden)

    J.W. Magona

    2004-06-01

    Full Text Available Strategic application of moxidectin pour-on (Cydectin(R was evaluated in Uganda for its effect on pasture larval counts and gastrointestinal nematode faecal egg counts in village cattle kept under tethering (semi-intensive grazing management. The strategic deworming schedule involved treating cattle twice at an interval of 2 months, at the end of the 1st wet season and during the 2nd wet season. Two groups of 30 cattle, each consisting of a treated and a control group, were examined for nematode infections every 4 weeks from June 1999 to January 2000. The treated group had significantly lower mean faecal egg counts than the untreated groups (t-value = 2.47, P < 0.05. Generally, the pasture larval counts on treated farms were lower than on untreated ones, but not significantly so (t-value = 2.22, P = 0.068. Pasture larval counts with different nematode species on treated farms were lower than on untreated ones, but the differences were not significant for Haemonchus spp. (t-value=1.68, P=0.145, Oesophagostomum spp. (t-value= 1.87, P=0.111, Trichostrongylus spp. (t-value=1.93, P=0.102, Dictyocaulus spp. (t-value= -0.74, P=0.485 and Cooperia spp. (t-value=-1.00, P=0.356. Treated farms did , however, have significantly lower pasture larval counts of Bunostomum spp. (t-value=4.64, P<0.05. This study has revealed that the application ofmoxidectin pour-on on cattle has an effect on faecal egg count and pasture contamination under the tethering grazing system. Moxidectin pour-on and the strategic deworming schedule evaluated here could be used for the control of gastrointestinal nematode infections in cattle by small-scale farmers who practise tethering or semi-intensive grazing management in Uganda and other tropical countries, especially where there is a bimodal rainfall pattern.

  18. Spatial Distribution of Reef Fish Species along the Southeast US Atlantic Coast Inferred from Underwater Video Survey Data.

    Directory of Open Access Journals (Sweden)

    Nathan M Bacheler

    Full Text Available Marine fish abundance and distribution often varies across spatial scales for a variety of reasons, and this variability has significant ecological and management consequences. We quantified the distribution of reef-associated fish species along the southeast United States Atlantic coast using underwater video survey samples (N = 4,855 in 2011-2014 to elucidate variability within species across space, depths, and habitats, as well as describe broad-scale patterns in species richness. Thirty-two species were seen at least 10 times on video, and the most commonly observed species were red porgy (Pagrus pagrus; 41.4% of videos, gray triggerfish (Balistes capriscus; 31.0%, black sea bass (Centropristis striata; 29.1%, vermilion snapper (Rhomboplites aurorubens; 27.7%, and red snapper (Lutjanus campechanus; 22.6%. Using generalized additive models, we found that most species were non-randomly distributed across space, depths, and habitats. Most rare species were observed along the continental shelf break, except for goliath grouper (Epinephelus itajara, which was found on the continental shelf in Florida and Georgia. We also observed higher numbers of species in shelf-break habitats from southern North Carolina to Georgia, and fewer in shallower water and at the northern and southern ends of the southeast United States Atlantic coast. Our study provides the first broad-scale description of the spatial distribution of reef fish in the region to be based on fishery-independent data, reinforces the utility of underwater video to survey reef fish, and can help improve the management of reef fish in the SEUS, for example, by improving indices of abundance.

  19. Jungle Giants: Assessing Sustainable Harvesting in a Difficult-to-Survey Species (Python reticulatus.

    Directory of Open Access Journals (Sweden)

    Daniel J D Natusch

    Full Text Available Sustainability of wildlife harvests is critical but difficult to assess. Evaluations of sustainability typically combine modelling with the measurement of underlying abundances. For many taxa harvested in developing countries, however, abundances are near-impossible to survey and a lack of detailed ecological information impedes the reliability of models. In such cases, repeated surveys of the attributes of harvested individuals may provide more robust information on sustainability. If the numbers, sizes and other demographic attributes of animals taken for the commercial trade do not change over biologically significant time intervals (decades, there is a prima facie case that the harvest is indeed sustainable. Here, we report the results of examinations of > 4,200 reticulated pythons (Python reticulatus taken for the commercial leather industry in northern and southern Sumatra, Indonesia. The numbers, mean body sizes, clutch sizes, sizes at maturity and proportion of giant specimens have not decreased between our first surveys (1995 and repeat surveys (2015. Thus, despite assumptions to the contrary, the harvest appears to be sustainable. We use our data to inform the design of future monitoring programs for this species. Our study underpins the need for robust science to inform wildlife trade policy and decision-making, and urges wildlife managers to assess sustainability of difficult-to-survey terrestrial wildlife by drawing inferences directly from the harvest itself.

  20. Jungle Giants: Assessing Sustainable Harvesting in a Difficult-to-Survey Species (Python reticulatus).

    Science.gov (United States)

    Natusch, Daniel J D; Lyons, Jessica A; Mumpuni; Riyanto, Awal; Shine, Richard

    2016-01-01

    Sustainability of wildlife harvests is critical but difficult to assess. Evaluations of sustainability typically combine modelling with the measurement of underlying abundances. For many taxa harvested in developing countries, however, abundances are near-impossible to survey and a lack of detailed ecological information impedes the reliability of models. In such cases, repeated surveys of the attributes of harvested individuals may provide more robust information on sustainability. If the numbers, sizes and other demographic attributes of animals taken for the commercial trade do not change over biologically significant time intervals (decades), there is a prima facie case that the harvest is indeed sustainable. Here, we report the results of examinations of > 4,200 reticulated pythons (Python reticulatus) taken for the commercial leather industry in northern and southern Sumatra, Indonesia. The numbers, mean body sizes, clutch sizes, sizes at maturity and proportion of giant specimens have not decreased between our first surveys (1995) and repeat surveys (2015). Thus, despite assumptions to the contrary, the harvest appears to be sustainable. We use our data to inform the design of future monitoring programs for this species. Our study underpins the need for robust science to inform wildlife trade policy and decision-making, and urges wildlife managers to assess sustainability of difficult-to-survey terrestrial wildlife by drawing inferences directly from the harvest itself.

  1. Updated survey of Fusarium species and toxins in Finnish cereal grains.

    Science.gov (United States)

    Hietaniemi, Veli; Rämö, Sari; Yli-Mattila, Tapani; Jestoi, Marika; Peltonen, Sari; Kartio, Mirja; Sieviläinen, Elina; Koivisto, Tauno; Parikka, Päivi

    2016-05-01

    The aim of the project was to produce updated information during 2005-14 on the Fusarium species found in Finnish cereal grains, and the toxins produced by them, as the last comprehensive survey study of Fusarium species and their toxins in Finland was carried out at the turn of the 1960s and the 1970s. Another aim was to use the latest molecular and chemical methods to investigate the occurrence and correlation of Fusarium species and their mycotoxins in Finland. The most common Fusarium species found in Finland in the FinMyco project 2005 and 2006 were F. avenaceum, F. culmorum, F. graminearum, F. poae, F. sporotrichioides and F. langsethiae. F. avenaceum was the most dominant species in barley, spring wheat and oat samples. The occurrence of F. culmorum and F. graminearum was high in oats and barley. Infection by Fusarium fungi was the lowest in winter cereal grains. The incidence of Fusarium species in 2005 was much higher than in 2006 due to weather conditions. F. langsethiae has become much more common in Finland since 2001. F. graminearum has also risen in the order of importance. A highly significant correlation was found between Fusarium graminearum DNA and deoxynivalenol (DON) levels in Finnish oats, barley and wheat. When comparing the FinMyco data in 2005-06 with the results of the Finnish safety monitoring programme for 2005-14, spring cereals were noted as being more susceptible to infection by Fusarium fungi and the formation of toxins. The contents of T-2 and HT-2 toxins and the frequency of exceptionally high DON concentrations all increased in Finland during 2005-14. Beauvericin (BEA), enniatins (ENNs) and moniliformin (MON) were also very common contaminants of Finnish grains in 2005-06. Climate change is leading to warmer weather, and this may indicate more changes in Finnish Fusarium mycobiota and toxin contents and profiles in the near future.

  2. Standardization of 241Am by digital coincidence counting, liquid scintillation counting and defined solid angle counting

    International Nuclear Information System (INIS)

    Balpardo, C.; Capoulat, M.E.; Rodrigues, D.; Arenillas, P.

    2010-01-01

    The nuclide 241 Am decays by alpha emission to 237 Np. Most of the decays (84.6%) populate the excited level of 237 Np with energy of 59.54 keV. Digital coincidence counting was applied to standardize a solution of 241 Am by alpha-gamma coincidence counting with efficiency extrapolation. Electronic discrimination was implemented with a pressurized proportional counter and the results were compared with two other independent techniques: Liquid scintillation counting using the logical sum of double coincidences in a TDCR array and defined solid angle counting taking into account activity inhomogeneity in the active deposit. The results show consistency between the three methods within a limit of a 0.3%. An ampoule of this solution will be sent to the International Reference System (SIR) during 2009. Uncertainties were analysed and compared in detail for the three applied methods.

  3. Estimating rates of local species extinction, colonization and turnover in animal communities

    Science.gov (United States)

    Nichols, James D.; Boulinier, T.; Hines, J.E.; Pollock, K.H.; Sauer, J.R.

    1998-01-01

    Species richness has been identified as a useful state variable for conservation and management purposes. Changes in richness over time provide a basis for predicting and evaluating community responses to management, to natural disturbance, and to changes in factors such as community composition (e.g., the removal of a keystone species). Probabilistic capture-recapture models have been used recently to estimate species richness from species count and presence-absence data. These models do not require the common assumption that all species are detected in sampling efforts. We extend this approach to the development of estimators useful for studying the vital rates responsible for changes in animal communities over time; rates of local species extinction, turnover, and colonization. Our approach to estimation is based on capture-recapture models for closed animal populations that permit heterogeneity in detection probabilities among the different species in the sampled community. We have developed a computer program, COMDYN, to compute many of these estimators and associated bootstrap variances. Analyses using data from the North American Breeding Bird Survey (BBS) suggested that the estimators performed reasonably well. We recommend estimators based on probabilistic modeling for future work on community responses to management efforts as well as on basic questions about community dynamics.

  4. Benjamin Thompson, Count Rumford Count Rumford on the nature of heat

    CERN Document Server

    Brown, Sanborn C

    1967-01-01

    Men of Physics: Benjamin Thompson - Count Rumford: Count Rumford on the Nature of Heat covers the significant contributions of Count Rumford in the fields of physics. Count Rumford was born with the name Benjamin Thompson on March 23, 1753, in Woburn, Massachusetts. This book is composed of two parts encompassing 11 chapters, and begins with a presentation of Benjamin Thompson's biography and his interest in physics, particularly as an advocate of an """"anti-caloric"""" theory of heat. The subsequent chapters are devoted to his many discoveries that profoundly affected the physical thought

  5. A Vision-Based Counting and Recognition System for Flying Insects in Intelligent Agriculture

    Directory of Open Access Journals (Sweden)

    Yuanhong Zhong

    2018-05-01

    Full Text Available Rapid and accurate counting and recognition of flying insects are of great importance, especially for pest control. Traditional manual identification and counting of flying insects is labor intensive and inefficient. In this study, a vision-based counting and classification system for flying insects is designed and implemented. The system is constructed as follows: firstly, a yellow sticky trap is installed in the surveillance area to trap flying insects and a camera is set up to collect real-time images. Then the detection and coarse counting method based on You Only Look Once (YOLO object detection, the classification method and fine counting based on Support Vector Machines (SVM using global features are designed. Finally, the insect counting and recognition system is implemented on Raspberry PI. Six species of flying insects including bee, fly, mosquito, moth, chafer and fruit fly are selected to assess the effectiveness of the system. Compared with the conventional methods, the test results show promising performance. The average counting accuracy is 92.50% and average classifying accuracy is 90.18% on Raspberry PI. The proposed system is easy-to-use and provides efficient and accurate recognition data, therefore, it can be used for intelligent agriculture applications.

  6. The impact of the species-area relationship on estimates of paleodiversity.

    Directory of Open Access Journals (Sweden)

    2005-08-01

    Full Text Available Estimates of paleodiversity patterns through time have relied on datasets that lump taxonomic occurrences from geographic areas of varying size per interval of time. In essence, such estimates assume that the species-area effect, whereby more species are recorded from larger geographic areas, is negligible for fossil data. We tested this assumption by using the newly developed Miocene Mammal Mapping Project database of western North American fossil mammals and its associated analysis tools to empirically determine the geographic area that contributed to species diversity counts in successive temporal bins. The results indicate that a species-area effect markedly influences counts of fossil species, just as variable spatial sampling influences diversity counts on the modern landscape. Removing this bias suggests some traditionally recognized peaks in paleodiversity are just artifacts of the species-area effect while others stand out as meriting further attention. This discovery means that there is great potential for refining existing time-series estimates of paleodiversity, and for using species-area relationships to more reliably understand the magnitude and timing of such biotically important events as extinction, lineage diversification, and long-term trends in ecological structure.

  7. Food insecurity, CD4 counts, and incomplete viral suppression among HIV+ patients from Texas Children's Hospital: A pilot study

    Science.gov (United States)

    Our goal was to determine the relationship between food insecurity and CD4 counts and viral suppression among pediatric HIV-positive patients. Food insecurity was assessed by validated survey. CD4 counts and viral load were abstracted from patients’ charts. We used linear regression for the dependen...

  8. Counting cormorants

    DEFF Research Database (Denmark)

    Bregnballe, Thomas; Carss, David N; Lorentsen, Svein-Håkon

    2013-01-01

    This chapter focuses on Cormorant population counts for both summer (i.e. breeding) and winter (i.e. migration, winter roosts) seasons. It also explains differences in the data collected from undertaking ‘day’ versus ‘roost’ counts, gives some definitions of the term ‘numbers’, and presents two...

  9. Winter Bird Assemblages in Rural and Urban Environments: A National Survey.

    Science.gov (United States)

    Tryjanowski, Piotr; Sparks, Tim H; Biaduń, Waldemar; Brauze, Tomasz; Hetmański, Tomasz; Martyka, Rafał; Skórka, Piotr; Indykiewicz, Piotr; Myczko, Łukasz; Kunysz, Przemysław; Kawa, Piotr; Czyż, Stanisław; Czechowski, Paweł; Polakowski, Michał; Zduniak, Piotr; Jerzak, Leszek; Janiszewski, Tomasz; Goławski, Artur; Duduś, Leszek; Nowakowski, Jacek J; Wuczyński, Andrzej; Wysocki, Dariusz

    2015-01-01

    Urban development has a marked effect on the ecological and behavioural traits of many living organisms, including birds. In this paper, we analysed differences in the numbers of wintering birds between rural and urban areas in Poland. We also analysed species richness and abundance in relation to longitude, latitude, human population size, and landscape structure. All these parameters were analysed using modern statistical techniques incorporating species detectability. We counted birds in 156 squares (0.25 km2 each) in December 2012 and again in January 2013 in locations in and around 26 urban areas across Poland (in each urban area we surveyed 3 squares and 3 squares in nearby rural areas). The influence of twelve potential environmental variables on species abundance and richness was assessed with Generalized Linear Mixed Models, Principal Components and Detrended Correspondence Analyses. Totals of 72 bird species and 89,710 individual birds were recorded in this study. On average (± SE) 13.3 ± 0.3 species and 288 ± 14 individuals were recorded in each square in each survey. A formal comparison of rural and urban areas revealed that 27 species had a significant preference; 17 to rural areas and 10 to urban areas. Moreover, overall abundance in urban areas was more than double that of rural areas. There was almost a complete separation of rural and urban bird communities. Significantly more birds and more bird species were recorded in January compared to December. We conclude that differences between rural and urban areas in terms of winter conditions and the availability of resources are reflected in different bird communities in the two environments.

  10. Winter Bird Assemblages in Rural and Urban Environments: A National Survey.

    Directory of Open Access Journals (Sweden)

    Piotr Tryjanowski

    Full Text Available Urban development has a marked effect on the ecological and behavioural traits of many living organisms, including birds. In this paper, we analysed differences in the numbers of wintering birds between rural and urban areas in Poland. We also analysed species richness and abundance in relation to longitude, latitude, human population size, and landscape structure. All these parameters were analysed using modern statistical techniques incorporating species detectability. We counted birds in 156 squares (0.25 km2 each in December 2012 and again in January 2013 in locations in and around 26 urban areas across Poland (in each urban area we surveyed 3 squares and 3 squares in nearby rural areas. The influence of twelve potential environmental variables on species abundance and richness was assessed with Generalized Linear Mixed Models, Principal Components and Detrended Correspondence Analyses. Totals of 72 bird species and 89,710 individual birds were recorded in this study. On average (± SE 13.3 ± 0.3 species and 288 ± 14 individuals were recorded in each square in each survey. A formal comparison of rural and urban areas revealed that 27 species had a significant preference; 17 to rural areas and 10 to urban areas. Moreover, overall abundance in urban areas was more than double that of rural areas. There was almost a complete separation of rural and urban bird communities. Significantly more birds and more bird species were recorded in January compared to December. We conclude that differences between rural and urban areas in terms of winter conditions and the availability of resources are reflected in different bird communities in the two environments.

  11. Protecting rare, old-growth, forest-associated species under the Survey and Manage program guidelines of the northwest forest plan.

    Science.gov (United States)

    Randy Molina; Bruce G. Marcot; Robin. Lesher

    2006-01-01

    The Survey and Manage Program of the Northwest Forest Plan (MFP) represents an unparalleled attempt to protect rare, little-known species associated with late-successional and old-growth forests on more than 7.7 million ha of federal lands. Approximately 400 species of amphibians, bryophytes, fungi, lichens, mollusks, vascular plants, arthropod functional groups, and...

  12. Population estimates and geographical distributions of swans and geese in East Asia based on counts during the non-breeding season

    DEFF Research Database (Denmark)

    Jia, Qiang; Koyama, Kazuo; Choi, Chang-Yong

    2016-01-01

    For the first time, we estimated the population sizes of two swan species and four goose species from observations during the non-breeding period in East Asia. Based on combined counts from South Korea, Japan and China, we estimated the total abundance of these species as follows: 42,000–47,000 W......For the first time, we estimated the population sizes of two swan species and four goose species from observations during the non-breeding period in East Asia. Based on combined counts from South Korea, Japan and China, we estimated the total abundance of these species as follows: 42......,000–47,000 Whooper Swans Cygnus cygnus ; 99,000–141,000 Tundra Swans C. columbianus bewickii ; 56,000–98,000 Swan Geese Anser cygnoides ; 157,000–194,000 Bean Geese A. fabalis ; 231,000–283,000 Greater White-fronted Geese A. albifrons ; and 14,000–19,000 Lesser White-fronted Geese A. erythropus. While the count data...... from Korea and Japan provide a good reflection of numbers present, there remain gaps in the coverage in China, which particularly affect the precision of the estimates for Bean, Greater and Lesser White-fronted Geese as well as Tundra Swans. Lack of subspecies distinction of Bean Geese in China until...

  13. Digital readout alpha survey instrument

    International Nuclear Information System (INIS)

    Jacobs, M.E.

    1976-01-01

    A prototype solid-state digital readout alpha particle survey instrument has been designed and constructed. The meter incorporates a Ludlum alpha scintillator as a detector, digital logic circuits for control and timing, and a Digilin counting module with reflective liquid crystal display. The device is used to monitor alpha radiation from a surface. Sample counts are totalized over 10-second intervals and displayed digitally in counts per minute up to 19,999. Tests over source samples with counts to 15,600 cpm have shown the device to be rapid, versatile and accurate. The instrument can be fabricated in one man-week and requires about $835 in material costs. A complete set of drawings is included

  14. Shortlist masterplan wind. Ship-based monitoring of seabirds and cetaceans

    Energy Technology Data Exchange (ETDEWEB)

    Van Bemmelen, R.; Geelhoed, S.; Leopold, M. [Institute for Marine Resources and Ecosystem Studies IMARES, Wageningen UR, IJmuiden (Netherlands)

    2011-02-15

    During April 2010 - February 2011, monthly surveys of seabirds and marine mammals were conducted aboard ships engaged in plankton surveys. After many years of little or no effort in far offshore areas of the DCS (Dutch Continental Shelf), this series of surveys provided the first recent ship-based data on seabirds, covering a large area (the entire DCS, including some Belgian and British waters) almost year round. Due to changes in the design of the survey grid, the use of several ships, spells of bad weather conditions and seasonal differences in the number of daylight hours, the resulting coverage is not evenly spread in space and time. Still, both in terms of areas covered and detailed data gathered, this series of surveys complement the aerial surveys carried out under the same programme Shortlist Masterplan Wind. By surveying beyond the designated areas for round II offshore wind farms on the DCS, areas that might be targeted for round III, such as the shallow Dogger Bank area, got a first boost in T-zero survey effort. From April 2010 till February 2011 11 surveys, totalling to 48 at-sea days, 4610 5-minute counts were conducted over a distance of 9021 km. At a counting strip width of mostly 300 m (200 m over a very small percentage of the counts), this amounts to a total surveyed area of 2706 km{sup 2}. The surveys have provided rough data on seabird distribution in far offshore areas. In total, 54,593 individuals of 90 bird species were recorded, from which 15,003 individuals of 36 species were recorded within the counting strip. Marine mammals were represented by 616 individuals of seven species, of which 389 individuals of six species were seen within the counting strip. Flying heights were noted for 5044 clusters of individuals, covering 75 species. Behaviour was noted for 1790 (clusters of) individuals. Apart from birds and marine mammals, 352 balloons were counted (of which 164 were within the counting strip) and proved omnipresent in periods of

  15. Short communication: Repeatability of differential goat bulk milk culture and associations with somatic cell count, total bacterial count, and standard plate count.

    Science.gov (United States)

    Koop, G; Dik, N; Nielen, M; Lipman, L J A

    2010-06-01

    The aims of this study were to assess how different bacterial groups in bulk milk are related to bulk milk somatic cell count (SCC), bulk milk total bacterial count (TBC), and bulk milk standard plate count (SPC) and to measure the repeatability of bulk milk culturing. On 53 Dutch dairy goat farms, 3 bulk milk samples were collected at intervals of 2 wk. The samples were cultured for SPC, coliform count, and staphylococcal count and for the presence of Staphylococcus aureus. Furthermore, SCC (Fossomatic 5000, Foss, Hillerød, Denmark) and TBC (BactoScan FC 150, Foss) were measured. Staphylococcal count was correlated to SCC (r=0.40), TBC (r=0.51), and SPC (r=0.53). Coliform count was correlated to TBC (r=0.33), but not to any of the other variables. Staphylococcus aureus did not correlate to SCC. The contribution of the staphylococcal count to the SPC was 31%, whereas the coliform count comprised only 1% of the SPC. The agreement of the repeated measurements was low. This study indicates that staphylococci in goat bulk milk are related to SCC and make a significant contribution to SPC. Because of the high variation in bacterial counts, repeated sampling is necessary to draw valid conclusions from bulk milk culturing. 2010 American Dairy Science Association. Published by Elsevier Inc. All rights reserved.

  16. The Global Garlic Mustard Field Survey (GGMFS: challenges and opportunities of a unique, large-scale collaboration for invasion biology

    Directory of Open Access Journals (Sweden)

    Robert Colautti

    2014-04-01

    Full Text Available To understand what makes some species successful invaders, it is critical to quantify performance differences between native and introduced regions, and among populations occupying a broad range of environmental conditions within each region. However, these data are not available even for the world’s most notorious invasive species. Here we introduce the Global Garlic Mustard Field Survey, a coordinated distributed field survey to collect performance data and germplasm from a single invasive species: garlic mustard (Alliaria petiolata across its entire distribution using minimal resources. We chose this species for its ecological impacts, prominence in ecological studies of invasion success, simple life history, and several genetic and life history attributes that make it amenable to experimental study. We developed a standardised field survey protocol to estimate population size (area and density, age structure, plant size and fecundity, as well as damage by herbivores and pathogens in each population, and to collect representative seed samples. Across four years and with contributions from 164 academic and non-academic participants from 16 countries in North America and Europe thus far, we have collected 45,788 measurements and counts of 137,811 plants from 383 populations and seeds from over 5,000 plants. All field data and seed resources will be curated for release to the scientific community. Our goal is to establish A. petiolata as a model species for plant invasion biology and to encourage large collaborative studies of other invasive species.

  17. Correlation between CD4 count and intensity of Candida colonization in the oropharynx of HIV-infected/ AIDS patient.

    Science.gov (United States)

    Bandar, Ivo Novita Sah; Widodo, Djoko; Djauzi, Samsuridjal; Muthalib, Abdul; Soegondo, Sidartawan; Wahyuningsih, Retno

    2006-01-01

    To know the correlation between CD4 count and intensity of Candida colonizations in the oropharynx of HIV-infected/AIDS patients, to get the prevalence of oropharyngeal candidiasis (OPC), and to know what kind of Candida species that causes oropharynx candidiasis of HIV-infected/AIDS patients. A cross-sectional study was conducted in HIV-infected/AIDS patients who came as outpatients and inpatients in Cipto Mangunkusumo Hospital. The patients were interviewed, physically examined, their CD4 counts were checked, and their mouth rinse samples were taken to be cultured. Candida species was identified in CHROMagar media, and data were processed. From September 2004 until January 2005, 60 HIV-infected/AIDS patients were included in this study. There were 86.7% males and 13.3% females. Majority of the patients were from 20-30 years age group (85%). The most frequent transmission was among drug users (75%) followed by sexual contact (18.3%). The median of CD4 counts was 100 cells/il, ranged from 2 to 842 cells/il. Proportion of the OPC was 63.3% (CI 95% = 51.1 - 75.5). From 59 Candida isolates in this study, 74.58% were C. albicans. Candida non C. albicans species that were found in this trial were C. krusei, C. parapsilosis and C. tropicalis. There was significant correlation between low CD4 counts and high intensity of Candida colonization on the oropharynx of the subjects (r = -0.756). There was strong negative correlation (r = -0.756) between CD4 count and intensity of Candida colonization in the oropharynx of HIV-infected/AIDS patients. Proportion of OPC in this study was 63.3%. The most frequent species found in the oropharynx of the subjects was C. albicans.

  18. Geographic range size and determinants of avian species richness

    DEFF Research Database (Denmark)

    Jetz, Walter; Rahbek, Carsten

    2002-01-01

    Geographic patterns in species richness are mainly based on wide-ranging species because their larger number of distribution records has a disproportionate contribution to the species richness counts. Here we demonstrate how this effect strongly influences our understanding of what determines spe...

  19. A Field Evaluation of the Time-of-Detection Method to Estimate Population Size and Density for Aural Avian Point Counts

    Directory of Open Access Journals (Sweden)

    Mathew W. Alldredge

    2007-12-01

    Full Text Available The time-of-detection method for aural avian point counts is a new method of estimating abundance, allowing for uncertain probability of detection. The method has been specifically designed to allow for variation in singing rates of birds. It involves dividing the time interval of the point count into several subintervals and recording the detection history of the subintervals when each bird sings. The method can be viewed as generating data equivalent to closed capture-recapture information. The method is different from the distance and multiple-observer methods in that it is not required that all the birds sing during the point count. As this method is new and there is some concern as to how well individual birds can be followed, we carried out a field test of the method using simulated known populations of singing birds, using a laptop computer to send signals to audio stations distributed around a point. The system mimics actual aural avian point counts, but also allows us to know the size and spatial distribution of the populations we are sampling. Fifty 8-min point counts (broken into four 2-min intervals using eight species of birds were simulated. Singing rate of an individual bird of a species was simulated following a Markovian process (singing bouts followed by periods of silence, which we felt was more realistic than a truly random process. The main emphasis of our paper is to compare results from species singing at (high and low homogenous rates per interval with those singing at (high and low heterogeneous rates. Population size was estimated accurately for the species simulated, with a high homogeneous probability of singing. Populations of simulated species with lower but homogeneous singing probabilities were somewhat underestimated. Populations of species simulated with heterogeneous singing probabilities were substantially underestimated. Underestimation was caused by both the very low detection probabilities of all distant

  20. Repeatability of differential goat bulk milk culture and associations with somatic cell count, total bacterial count, and standard plate count

    NARCIS (Netherlands)

    Koop, G.; Dik, N.; Nielen, M.; Lipman, L.J.A.

    2010-01-01

    The aims of this study were to assess how different bacterial groups in bulk milk are related to bulk milk somatic cell count (SCC), bulk milk total bacterial count (TBC), and bulk milk standard plate count (SPC) and to measure the repeatability of bulk milk culturing. On 53 Dutch dairy goat farms,

  1. Monitoring butterflies using counts of puddling males: A case study of the Rajah Brooke's Birdwing (Trogonoptera brookiana albescens.

    Directory of Open Access Journals (Sweden)

    Chooi-Khim Phon

    Full Text Available The Rajah Brooke's Birdwing, Trogonoptera brookiana, is a large, iconic butterfly that is facing heavy commercial exploitation and habitat loss. Males of some subspecies exhibit puddling behavior. A method of conservation monitoring was developed for subspecies albescens in Ulu Geroh, Peninsular Malaysia, where the males consistently puddle in single-species aggregations at stable geothermal springs, reaching well over 300 individuals when the population is at its highest. Digital photography was used to conduct counts of numbers of males puddling. The numbers of birdwings puddling were significantly correlated with counts of birdwings in flight, but were much higher. The numbers puddling during the peak hour were correlated with numbers puddling throughout the day and could be predicted using the numbers puddling at an alternative hour, enabling flexibility in the time of counts. Average counts for three images taken at each puddle at three peak hours between 1400-1600 hours over 2-3 days were used as a monthly population index. The numbers puddling were positively associated with higher relative humidity and brightness during monitoring hours. Monthly counts of birdwings from monitoring of puddles over a period of two years are presented. The minimum effort required for a monitoring program using counts of puddling males is discussed, as well as the potential of using the method to monitor other species of puddling butterflies.

  2. Monitoring butterflies using counts of puddling males: A case study of the Rajah Brooke's Birdwing (Trogonoptera brookiana albescens).

    Science.gov (United States)

    Phon, Chooi-Khim; Kirton, Laurence G; Norma-Rashid, Yusoff

    2017-01-01

    The Rajah Brooke's Birdwing, Trogonoptera brookiana, is a large, iconic butterfly that is facing heavy commercial exploitation and habitat loss. Males of some subspecies exhibit puddling behavior. A method of conservation monitoring was developed for subspecies albescens in Ulu Geroh, Peninsular Malaysia, where the males consistently puddle in single-species aggregations at stable geothermal springs, reaching well over 300 individuals when the population is at its highest. Digital photography was used to conduct counts of numbers of males puddling. The numbers of birdwings puddling were significantly correlated with counts of birdwings in flight, but were much higher. The numbers puddling during the peak hour were correlated with numbers puddling throughout the day and could be predicted using the numbers puddling at an alternative hour, enabling flexibility in the time of counts. Average counts for three images taken at each puddle at three peak hours between 1400-1600 hours over 2-3 days were used as a monthly population index. The numbers puddling were positively associated with higher relative humidity and brightness during monitoring hours. Monthly counts of birdwings from monitoring of puddles over a period of two years are presented. The minimum effort required for a monitoring program using counts of puddling males is discussed, as well as the potential of using the method to monitor other species of puddling butterflies.

  3. Standardization of {sup 241}Am by digital coincidence counting, liquid scintillation counting and defined solid angle counting

    Energy Technology Data Exchange (ETDEWEB)

    Balpardo, C., E-mail: balpardo@cae.cnea.gov.a [Laboratorio de Metrologia de Radioisotopos, CNEA, Buenos Aires (Argentina); Capoulat, M.E.; Rodrigues, D.; Arenillas, P. [Laboratorio de Metrologia de Radioisotopos, CNEA, Buenos Aires (Argentina)

    2010-07-15

    The nuclide {sup 241}Am decays by alpha emission to {sup 237}Np. Most of the decays (84.6%) populate the excited level of {sup 237}Np with energy of 59.54 keV. Digital coincidence counting was applied to standardize a solution of {sup 241}Am by alpha-gamma coincidence counting with efficiency extrapolation. Electronic discrimination was implemented with a pressurized proportional counter and the results were compared with two other independent techniques: Liquid scintillation counting using the logical sum of double coincidences in a TDCR array and defined solid angle counting taking into account activity inhomogeneity in the active deposit. The results show consistency between the three methods within a limit of a 0.3%. An ampoule of this solution will be sent to the International Reference System (SIR) during 2009. Uncertainties were analysed and compared in detail for the three applied methods.

  4. The demand of car rentals: a microeconometric approach with count models and survey data

    Czech Academy of Sciences Publication Activity Database

    Menezes, A. G.; Uzagalieva, Ainura

    2013-01-01

    Roč. 5, č. 1 (2013), s. 25-41 ISSN 1973-3909 Institutional support: RVO:67985998 Keywords : count data models * tourism * tax rates Subject RIV: AH - Economics http://www.rofea.org/index.php?journal=journal&page=article&op=view&path%5B%5D=106

  5. Long-term avifaunal survey in an urban ecosystem from southeastern Brazil, with comments on range extensions, new and disappearing species

    Directory of Open Access Journals (Sweden)

    Marcelo Ferreira de Vasconcelos

    2013-01-01

    Full Text Available Urban avifaunal surveys in Brazil have been increasing in recent years, despite none of them consisting of long-term studies indicating events of regional colonization and/or missing species. Here, we present an avifaunal survey of an urbanized ecosystem in southeastern Brazil, carried out along 30 years, on the campus of the Pontifícia Universidade Católica de Minas Gerais, municipality of Belo Horizonte, Minas Gerais state. Inside the campus there is a forest reserve adjacent to a small lake. The inventory was mainly based on opportunistic records from the years 1982-2013. We recorded 134 bird species along the past 30 years. However, the present avifauna is composed of 123 species. A total of 97 species was recorded in the reserve, including the forest fragment and the adjacent lake, of which 44 were exclusive to this area. Nevertheless, the majority of the current species found in the study area is forest independent (N = 51 or semi-dependent (N = 46. There is a predominance of insectivorous (N = 43 and omnivorous (N = 29 species. The current avifauna is represented by 15 migratory species, which can be found both in the urbanized area and in the forest remnant. However, the majority of the species (N = 75 is resident in the area, including three invasive species, whereas few others (N = 28 are occasional visitors. The remaining species were probably introduced in the area. There were 11 cases of disappearing species, which include typical forest birds, and also species typical of wetlands and rural environments. We also comment on recent colonization and on the possible effects of isolation on birds. Probably, the majority of forest-dependents are on the brink of extinction in the forest fragment. Thus, the species' list provided here can be useful as a database for monitoring long-term effects of urbanization on this bird community.

  6. Multiple comparative metagenomics using multiset k-mer counting

    Directory of Open Access Journals (Sweden)

    Gaëtan Benoit

    2016-11-01

    Full Text Available Background Large scale metagenomic projects aim to extract biodiversity knowledge between different environmental conditions. Current methods for comparing microbial communities face important limitations. Those based on taxonomical or functional assignation rely on a small subset of the sequences that can be associated to known organisms. On the other hand, de novo methods, that compare the whole sets of sequences, either do not scale up on ambitious metagenomic projects or do not provide precise and exhaustive results. Methods These limitations motivated the development of a new de novo metagenomic comparative method, called Simka. This method computes a large collection of standard ecological distances by replacing species counts by k-mer counts. Simka scales-up today’s metagenomic projects thanks to a new parallel k-mer counting strategy on multiple datasets. Results Experiments on public Human Microbiome Project datasets demonstrate that Simka captures the essential underlying biological structure. Simka was able to compute in a few hours both qualitative and quantitative ecological distances on hundreds of metagenomic samples (690 samples, 32 billions of reads. We also demonstrate that analyzing metagenomes at the k-mer level is highly correlated with extremely precise de novo comparison techniques which rely on all-versus-all sequences alignment strategy or which are based on taxonomic profiling.

  7. Mourning dove population trend estimates from Call-Count and North American Breeding Bird Surveys

    Science.gov (United States)

    Sauer, J.R.; Dolton, D.D.; Droege, S.

    1994-01-01

    The mourning dove (Zenaida macroura) Callcount Survey and the North American Breeding Bird Survey provide information on population trends of mourning doves throughout the continental United States. Because surveys are an integral part of the development of hunting regulations, a need exists to determine which survey provides precise information. We estimated population trends from 1966 to 1988 by state and dove management unit, and assessed the relative efficiency of each survey. Estimates of population trend differ (P lt 0.05) between surveys in 11 of 48 states; 9 of 11 states with divergent results occur in the Eastern Management Unit. Differences were probably a consequence of smaller sample sizes in the Callcount Survey. The Breeding Bird Survey generally provided trend estimates with smaller variances than did the Callcount Survey. Although the Callcount Survey probably provides more withinroute accuracy because of survey methods and timing, the Breeding Bird Survey has a larger sample size of survey routes and greater consistency of coverage in the Eastern Unit.

  8. Estimation of Species Identification Error: Implications for Raptor Migration Counts and Trend Estimation

    Science.gov (United States)

    J.M. Hull; A.M. Fish; J.J. Keane; S.R. Mori; B.J Sacks; A.C. Hull

    2010-01-01

    One of the primary assumptions associated with many wildlife and population trend studies is that target species are correctly identified. This assumption may not always be valid, particularly for species similar in appearance to co-occurring species. We examined size overlap and identification error rates among Cooper's (Accipiter cooperii...

  9. Clean Hands Count

    Medline Plus

    Full Text Available ... Like this video? Sign in to make your opinion count. Sign in 131 2 Don't like this video? Sign in to make your opinion count. Sign in 3 Loading... Loading... Transcript The ...

  10. An Interferometric Spectral-Line and Imaging Survey of VY Canis Majoris in the 345 GHz Band

    OpenAIRE

    Kaminski, T.; Gottlieb, C. A.; Young, K. H.; Menten, K. M.; Patel, N. A.

    2013-01-01

    A spectral line survey of the oxygen-rich red supergiant VY Canis Majoris was made between 279 and 355 GHz with the Submillimeter Array. Two hundred twenty three spectral features from 19 molecules (not counting isotopic species of some of them) were observed, including the rotational spectra of TiO, TiO2, and AlCl for the first time in this source. The parameters and an atlas of all spectral features is presented. Observations of each line with a synthesized beam of ~0.9 arcsec, reveal the c...

  11. Investigation on Carbohydrate Counting Method in Type 1 Diabetic Patients

    Directory of Open Access Journals (Sweden)

    Osman Son

    2014-01-01

    Full Text Available Objective. The results from Diabetes Control and Complications Trial (DCCT have propounded the importance of the approach of treatment by medical nutrition when treating diabetes mellitus (DM. During this study, we tried to inquire carbohydrate (Kh count method’s positive effects on the type 1 DM treatment’s success as well as on the life quality of the patients. Methods. 22 of 37 type 1 DM patients who applied to Eskişehir Osmangazi University, Faculty of Medicine Hospital, Department of Endocrinology and Metabolism, had been treated by Kh count method and 15 of them are treated by multiple dosage intensive insulin treatment with applying standard diabetic diet as a control group and both of groups were under close follow-up for 6 months. Required approval was taken from the Ethical Committee of Eskişehir Osmangazi University, Medical Faculty, as well as informed consent from the patients. The body weight of patients who are treated by carbohydrate count method and multiple dosage intensive insulin treatment during the study beginning and after 6-month term, body mass index, and body compositions are analyzed. A short life quality and medical research survey applied. At statistical analysis, t-test, chi-squared test, and Mann-Whitney U test were used. Results. There had been no significant change determined at glycemic control indicators between the Kh counting group and the standard diabetic diet and multiple dosage insulin treatment group in our study. Conclusion. As a result, Kh counting method which offers a flexible nutrition plan to diabetic individuals is a functional method.

  12. Strategic survey framework for the Northwest Forest Plan survey and manage program.

    Science.gov (United States)

    Randy Molina; Dan McKenzie; Robin Lesher; Jan Ford; Jim Alegria; Richard Cutler

    2003-01-01

    This document outlines an iterative process for assessing the information needs for all Northwest Forest Plan (NWFP) survey and manage species, designing and implementing strategic surveys (including field surveys and other information-gathering processes), and analyzing that information for use in the NWFP annual species review and adaptive-management processes. The...

  13. Noun Countability; Count Nouns and Non-count Nouns, What are the Syntactic Differences Between them?

    Directory of Open Access Journals (Sweden)

    Azhar A. Alkazwini

    2016-11-01

    Full Text Available Words that function as the subjects of verbs, objects of verbs or prepositions and which can have a plural form and possessive ending are known as nouns. They are described as referring to persons, places, things, states, or qualities and might also be used as an attributive modifier. In this paper, classes and subclasses of nouns shall be presented, then, noun countability branching into count and non-count nous shall be discussed. A number of present examples illustrating differences between count and non-count nouns and this includes determiner-head-co-occurrence restrictions of number, subject-verb agreement, in addition to some exceptions to this agreement rule shall be discussed. Also, the lexically inherent number in nouns and how inherently plural nouns are classified in terms of (+/- count are illustrated. This research will discuss partitive construction of count and non-count nouns, nouns as attributive modifier and, finally, conclude with the fact that there are syntactic difference between count and non-count in the English Language.

  14. Turkey vulture surveys in Cuba

    Science.gov (United States)

    Wotzkow, C.; Wiley, J.W.

    1988-01-01

    Turkey Vultures (Cathartes aura), were surveyed monthly in Cuba from March 1982-January 1983. A total of 25371 vultures were tallied in 7186 km (3.5 vultures/transect km) of roadside counting along main highways leading from the city of La Habana (northwestern Cuba) to the city of Las Tunas (southeast). Numbers of vultures counted declined substantially beyond 200 m from the transect road. Density of vultures observed within 200 m of the road along the transect route was 0.06/ha. Highest counts were obtained in March, April and June. Turkey Vulture flying activity was greatest during the periods 0900-1200 H and 1400-1700 H.

  15. AKARI/IRC source catalogues and source counts for the IRAC Dark Field, ELAIS North and the AKARI Deep Field South

    Science.gov (United States)

    Davidge, H.; Serjeant, S.; Pearson, C.; Matsuhara, H.; Wada, T.; Dryer, B.; Barrufet, L.

    2017-12-01

    We present the first detailed analysis of three extragalactic fields (IRAC Dark Field, ELAIS-N1, ADF-S) observed by the infrared satellite, AKARI, using an optimized data analysis toolkit specifically for the processing of extragalactic point sources. The InfaRed Camera (IRC) on AKARI complements the Spitzer Space Telescope via its comprehensive coverage between 8-24 μm filling the gap between the Spitzer/IRAC and MIPS instruments. Source counts in the AKARI bands at 3.2, 4.1, 7, 11, 15 and 18 μm are presented. At near-infrared wavelengths, our source counts are consistent with counts made in other AKARI fields and in general with Spitzer/IRAC (except at 3.2 μm where our counts lie above). In the mid-infrared (11 - 18 μm), we find our counts are consistent with both previous surveys by AKARI and the Spitzer peak-up imaging survey with the InfraRed Spectrograph (IRS). Using our counts to constrain contemporary evolutionary models, we find that although the models and counts are in agreement at mid-infrared wavelengths there are inconsistencies at wavelengths shortward of 7 μm, suggesting either a problem with stellar subtraction or indicating the need for refinement of the stellar population models. We have also investigated the AKARI/IRC filters, and find an active galactic nucleus selection criteria out to z < 2 on the basis of AKARI 4.1, 11, 15 and 18 μm colours.

  16. Clean Hands Count

    Medline Plus

    Full Text Available ... starting stop Loading... Watch Queue Queue __count__/__total__ It’s YouTube. Uninterrupted. Loading... Want music and videos with ... ads? Get YouTube Red. Working... Not now Try it free Find out why Close Clean Hands Count ...

  17. Species Trials at the Waiakea Arboretum, Hilo, Hawaii

    Science.gov (United States)

    George B. Richmond

    1963-01-01

    Survival counts were made of 84 exotic tree species planted during 1956-1960 in a cleared rain-forest area near Hilo, Hawaii. Growth measurements were recorded for 5- and 6-year-old plantings. Most species had good survival, but some failed entirely. Soil depth was found to have a strong influence on rate of growth, but not on survival. Several valuable timber species...

  18. Count-to-count time interval distribution analysis in a fast reactor

    International Nuclear Information System (INIS)

    Perez-Navarro Gomez, A.

    1973-01-01

    The most important kinetic parameters have been measured at the zero power fast reactor CORAL-I by means of the reactor noise analysis in the time domain, using measurements of the count-to-count time intervals. (Author) 69 refs

  19. Weeds in spring cereal fields in Finland - a third survey

    Directory of Open Access Journals (Sweden)

    J. SALONEN

    2008-12-01

    Full Text Available A survey of weeds in spring cereal fields was conducted in 16 regions of southern and central Finland in 1997-1999. Data were collected from conventional and organic farms, both of which applied their normal cropping practices. A total of 690 fields were investigated by counting and weighing the weed species from ten sample quadrats 0.1 m2 in size in late July - early August. Altogether 160 weed species were found, of which 134 were broad-leaved and 26 grass species. The total number of weed species ranged from 41 to 84 between regions. In organically farmed fields, the average species number was 24 and in conventionally farmed fields 16. The most frequent weed species were Viola arvensis 84%, Stellaria media 76% and Galeopsis spp. 70%. Only 18 species exceeded the frequency level of 33%. The average density of weeds was 136 m-2 (median= 91 in sprayed conventional fields, 420 m-2 (374 in unsprayed conventional fields and 469 m-2 (395 in organic fields. The average air-dry above-ground biomass of weeds was 163 kg ha-1 (median=63, 605 kg ha-1 (413 and 678 kg ha-1 (567, respectively. Weed biomass accounted for 3% of the total biomass of the crop stand in sprayed conventional fields and for 17% in organic fields. Elymus repens, the most frequent grass species, produced the highest proportion of weed biomass.

  20. Comparative Effectiveness of Two Walking Interventions on Participation, Step Counts, and Health.

    Science.gov (United States)

    Smith-McLallen, Aaron; Heller, Debbie; Vernisi, Kristin; Gulick, Diana; Cruz, Samantha; Snyder, Richard L

    2017-03-01

    To (1) compare the effects of two worksite-based walking interventions on employee participation rates; (2) compare average daily step counts between conditions, and; (3) examine the effects of increases in average daily step counts on biometric and psychologic outcomes. We conducted a cluster-randomized trial in which six employer groups were randomly selected and randomly assigned to condition. Four manufacturing worksites and two office-based worksite served as the setting. A total of 474 employees from six employer groups were included. A standard walking program was compared to an enhanced program that included incentives, feedback, competitive challenges, and monthly wellness workshops. Walking was measured by self-reported daily step counts. Survey measures and biometric screenings were administered at baseline and 3, 6, and 9 months after baseline. Analysis used linear mixed models with repeated measures. During 9 months, participants in the enhanced condition averaged 726 more steps per day compared with those in the standard condition (p women (-2.1 lbs.), and reductions in body mass index (-0.41 men, -0.31 women). Higher step counts were also associated with improvements in mood, having more energy, and higher ratings of overall health. An enhanced walking program significantly increases participation rates and daily step counts, which were associated with weight loss and reductions in body mass index.

  1. Fast radio burst event rate counts - I. Interpreting the observations

    Science.gov (United States)

    Macquart, J.-P.; Ekers, R. D.

    2018-02-01

    The fluence distribution of the fast radio burst (FRB) population (the `source count' distribution, N (>F) ∝Fα), is a crucial diagnostic of its distance distribution, and hence the progenitor evolutionary history. We critically reanalyse current estimates of the FRB source count distribution. We demonstrate that the Lorimer burst (FRB 010724) is subject to discovery bias, and should be excluded from all statistical studies of the population. We re-examine the evidence for flat, α > -1, source count estimates based on the ratio of single-beam to multiple-beam detections with the Parkes multibeam receiver, and show that current data imply only a very weak constraint of α ≲ -1.3. A maximum-likelihood analysis applied to the portion of the Parkes FRB population detected above the observational completeness fluence of 2 Jy ms yields α = -2.6_{-1.3}^{+0.7 }. Uncertainties in the location of each FRB within the Parkes beam render estimates of the Parkes event rate uncertain in both normalizing survey area and the estimated post-beam-corrected completeness fluence; this uncertainty needs to be accounted for when comparing the event rate against event rates measured at other telescopes.

  2. What Counts as a 'Social and Ethical Issue' in Nanotechnology?

    OpenAIRE

    Bruce V. Lewenstein

    2005-01-01

    As 'social and ethical issues' becomes a recurring phrase in the community paying attention to nanotechnology research, a crucial question becomes: what counts as a social and ethical issue? A typical list includes privacy, environmental health and safety, media hype, and other apparently unrelated issues. This article surveys those issues and suggests that concerns about fundamental concepts of ethics, such as fairness, justice, equity, and especially power, unite the various issues identifi...

  3. An evaluation of the Bayesian approach to fitting the N-mixture model for use with pseudo-replicated count data

    Science.gov (United States)

    Toribo, S.G.; Gray, B.R.; Liang, S.

    2011-01-01

    The N-mixture model proposed by Royle in 2004 may be used to approximate the abundance and detection probability of animal species in a given region. In 2006, Royle and Dorazio discussed the advantages of using a Bayesian approach in modelling animal abundance and occurrence using a hierarchical N-mixture model. N-mixture models assume replication on sampling sites, an assumption that may be violated when the site is not closed to changes in abundance during the survey period or when nominal replicates are defined spatially. In this paper, we studied the robustness of a Bayesian approach to fitting the N-mixture model for pseudo-replicated count data. Our simulation results showed that the Bayesian estimates for abundance and detection probability are slightly biased when the actual detection probability is small and are sensitive to the presence of extra variability within local sites.

  4. Seasonal fluctuations of airborne pollen grains count and its correlation with climatic factors from khairpur; sindh, pakistan

    International Nuclear Information System (INIS)

    Perveen, A.; Khan, M.

    2014-01-01

    This is the first aerobiological survey of Khairpur, Sindh. The survey was conducted from January-December, 2011 using Burkard's Seven Days Volumetric Spore trap. A total of 4559 pollen/m3 were recorded belonging to 33 plant families and 41 pollen types. The major pollen types were Poaceae (13.84%), Amaranthaceae/ Chenopodiaceae (10.40%), Cyperus rotundus (7.61%); Prosopis juliflora (6.19%), Brassica campestris (4.91%), Typha angustifolia (4.89%), Tamarix indica (4.43%), Eucalyptus globules (4.28%), Conocarpus erectus (3.73%), Asteraceae (3.01%), Guaicum officinale (2.94%), Azadirachta indica (2.74%), Malvaceae (2.15%) and Phoenix dactylifera (1.84%) constituting more than 70% of total pollen catch. The highest pollen grains concentration was observed in May-2011 with 880 pollen/m3 count while second highest pollen concentration was detected in September 2011 with 682 pollen/m3. The lowest count was found in December- 2011. Climatic factors like wind speed, average temperature, humidity and rainfall were correlated with the pollen counts. Different pollen types showed significant positive correlation with average temperature while negative correlation with humidity and wind speed. (author)

  5. Telephony user survey

    CERN Multimedia

    IT Department

    2016-01-01

    Let us know your needs to better plan the transition to a new CERN telephony system.   CERN is planning to upgrade its telephony network and replace the system with a new and modern VoIP infrastructure. We strive to make this transition as beneficial and smooth as possible for you. Please let us know more about your current working environment, expectations and suggestions by responding to this survey: https://cern.ch/tel-survey. The more answers we get, the better the new system will serve everyone in the future. The survey will take you about five minutes to complete; we are counting on your feedback!

  6. The effect of volume and quenching on estimation of counting efficiencies in liquid scintillation counting

    International Nuclear Information System (INIS)

    Knoche, H.W.; Parkhurst, A.M.; Tam, S.W.

    1979-01-01

    The effect of volume on the liquid scintillation counting performance of 14 C-samples has been investigated. A decrease in counting efficiency was observed for samples with volumes below about 6 ml and those above about 18 ml when unquenched samples were assayed. Two quench-correction methods, sample channels ratio and external standard channels ratio, and three different liquid scintillation counters, were used in an investigation to determine the magnitude of the error in predicting counting efficiencies when small volume samples (2 ml) with different levels of quenching were assayed. The 2 ml samples exhibited slightly greater standard deviations of the difference between predicted and determined counting efficiencies than did 15 ml samples. Nevertheless, the magnitude of the errors indicate that if the sample channels ratio method of quench correction is employed, 2 ml samples may be counted in conventional counting vials with little loss in counting precision. (author)

  7. TasselNet: counting maize tassels in the wild via local counts regression network.

    Science.gov (United States)

    Lu, Hao; Cao, Zhiguo; Xiao, Yang; Zhuang, Bohan; Shen, Chunhua

    2017-01-01

    Accurately counting maize tassels is important for monitoring the growth status of maize plants. This tedious task, however, is still mainly done by manual efforts. In the context of modern plant phenotyping, automating this task is required to meet the need of large-scale analysis of genotype and phenotype. In recent years, computer vision technologies have experienced a significant breakthrough due to the emergence of large-scale datasets and increased computational resources. Naturally image-based approaches have also received much attention in plant-related studies. Yet a fact is that most image-based systems for plant phenotyping are deployed under controlled laboratory environment. When transferring the application scenario to unconstrained in-field conditions, intrinsic and extrinsic variations in the wild pose great challenges for accurate counting of maize tassels, which goes beyond the ability of conventional image processing techniques. This calls for further robust computer vision approaches to address in-field variations. This paper studies the in-field counting problem of maize tassels. To our knowledge, this is the first time that a plant-related counting problem is considered using computer vision technologies under unconstrained field-based environment. With 361 field images collected in four experimental fields across China between 2010 and 2015 and corresponding manually-labelled dotted annotations, a novel Maize Tassels Counting ( MTC ) dataset is created and will be released with this paper. To alleviate the in-field challenges, a deep convolutional neural network-based approach termed TasselNet is proposed. TasselNet can achieve good adaptability to in-field variations via modelling the local visual characteristics of field images and regressing the local counts of maize tassels. Extensive results on the MTC dataset demonstrate that TasselNet outperforms other state-of-the-art approaches by large margins and achieves the overall best counting

  8. TasselNet: counting maize tassels in the wild via local counts regression network

    Directory of Open Access Journals (Sweden)

    Hao Lu

    2017-11-01

    Full Text Available Abstract Background Accurately counting maize tassels is important for monitoring the growth status of maize plants. This tedious task, however, is still mainly done by manual efforts. In the context of modern plant phenotyping, automating this task is required to meet the need of large-scale analysis of genotype and phenotype. In recent years, computer vision technologies have experienced a significant breakthrough due to the emergence of large-scale datasets and increased computational resources. Naturally image-based approaches have also received much attention in plant-related studies. Yet a fact is that most image-based systems for plant phenotyping are deployed under controlled laboratory environment. When transferring the application scenario to unconstrained in-field conditions, intrinsic and extrinsic variations in the wild pose great challenges for accurate counting of maize tassels, which goes beyond the ability of conventional image processing techniques. This calls for further robust computer vision approaches to address in-field variations. Results This paper studies the in-field counting problem of maize tassels. To our knowledge, this is the first time that a plant-related counting problem is considered using computer vision technologies under unconstrained field-based environment. With 361 field images collected in four experimental fields across China between 2010 and 2015 and corresponding manually-labelled dotted annotations, a novel Maize Tassels Counting (MTC dataset is created and will be released with this paper. To alleviate the in-field challenges, a deep convolutional neural network-based approach termed TasselNet is proposed. TasselNet can achieve good adaptability to in-field variations via modelling the local visual characteristics of field images and regressing the local counts of maize tassels. Extensive results on the MTC dataset demonstrate that TasselNet outperforms other state-of-the-art approaches by large

  9. Robustifying Bayesian nonparametric mixtures for count data.

    Science.gov (United States)

    Canale, Antonio; Prünster, Igor

    2017-03-01

    Our motivating application stems from surveys of natural populations and is characterized by large spatial heterogeneity in the counts, which makes parametric approaches to modeling local animal abundance too restrictive. We adopt a Bayesian nonparametric approach based on mixture models and innovate with respect to popular Dirichlet process mixture of Poisson kernels by increasing the model flexibility at the level both of the kernel and the nonparametric mixing measure. This allows to derive accurate and robust estimates of the distribution of local animal abundance and of the corresponding clusters. The application and a simulation study for different scenarios yield also some general methodological implications. Adding flexibility solely at the level of the mixing measure does not improve inferences, since its impact is severely limited by the rigidity of the Poisson kernel with considerable consequences in terms of bias. However, once a kernel more flexible than the Poisson is chosen, inferences can be robustified by choosing a prior more general than the Dirichlet process. Therefore, to improve the performance of Bayesian nonparametric mixtures for count data one has to enrich the model simultaneously at both levels, the kernel and the mixing measure. © 2016, The International Biometric Society.

  10. Behavior of Listeria monocytogenes in a multi-species biofilm with Enterococcus faecalis and Enterococcus faecium and control through sanitation procedures.

    Science.gov (United States)

    da Silva Fernandes, Meg; Kabuki, Dirce Yorika; Kuaye, Arnaldo Yoshiteru

    2015-05-04

    The formation of mono-species biofilm (Listeria monocytogenes) and multi-species biofilms (Enterococcus faecium, Enterococcus faecalis, and L. monocytogenes) was evaluated. In addition, the effectiveness of sanitation procedures for the control of the multi-species biofilm also was evaluated. The biofilms were grown on stainless steel coupons at various incubation temperatures (7, 25 and 39°C) and contact times (0, 1, 2, 4, 6 and 8 days). In all tests, at 7°C, the microbial counts were below 0.4 log CFU/cm(2) and not characteristic of biofilms. In mono-species biofilm, the counts of L. monocytogenes after 8 days of contact were 4.1 and 2.8 log CFU/cm(2) at 25 and 39°C, respectively. In the multi-species biofilms, Enterococcus spp. were present at counts of 8 log CFU/cm(2) at 25 and 39°C after 8 days of contact. However, the L. monocytogenes in multi-species biofilms was significantly affected by the presence of Enterococcus spp. and by temperature. At 25°C, the growth of L. monocytogenes biofilms was favored in multi-species cultures, with counts above 6 log CFU/cm(2) after 8 days of contact. In contrast, at 39°C, a negative effect was observed for L. monocytogenes biofilm growth in mixed cultures, with a significant reduction in counts over time and values below 0.4 log CFU/cm(2) starting at day 4. Anionic tensioactive cleaning complemented with another procedure (acid cleaning, disinfection or acid cleaning+disinfection) eliminated the multi-species biofilms under all conditions tested (counts of all micro-organismsbiofilms under all tested conditions (counts of the all microorganisms biofilms under all the test conditions. Copyright © 2015 Elsevier B.V. All rights reserved.

  11. Isospectral discrete and quantum graphs with the same flip counts and nodal counts

    Science.gov (United States)

    Juul, Jonas S.; Joyner, Christopher H.

    2018-06-01

    The existence of non-isomorphic graphs which share the same Laplace spectrum (to be referred to as isospectral graphs) leads naturally to the following question: what additional information is required in order to resolve isospectral graphs? It was suggested by Band, Shapira and Smilansky that this might be achieved by either counting the number of nodal domains or the number of times the eigenfunctions change sign (the so-called flip count) (Band et al 2006 J. Phys. A: Math. Gen. 39 13999–4014 Band and Smilansky 2007 Eur. Phys. J. Spec. Top. 145 171–9). Recent examples of (discrete) isospectral graphs with the same flip count and nodal count have been constructed by Ammann by utilising Godsil–McKay switching (Ammann private communication). Here, we provide a simple alternative mechanism that produces systematic examples of both discrete and quantum isospectral graphs with the same flip and nodal counts.

  12. A Survey of Bee Species Found Pollinating Watermelons in the Lower Rio Grande Valley of Texas

    Directory of Open Access Journals (Sweden)

    C. S. Henne

    2012-01-01

    Full Text Available Using a combination of flower traps and visual observations, we surveyed three watermelon (Citrullus lanatus (Thunb. Matsum. & Nakai fields in the Lower Rio Grande Valley to determine what bees inhabit this crop in this region. No managed honey bee (Apis mellifera L. hives were in any of the fields; however, two contained managed hives of the common eastern bumble bee, Bombus impatiens (Cresson. A total of 15 species were collected or observed from all three fields combined. Of these species, only four were found to be very abundant: Agapostemon angelicus Cockerell/texanus Cresson, A. mellifera, Lasioglossum coactum (Cresson, and Melissodes thelypodii Cockerell. Apis mellifera comprised 46% of all bees collected from all three fields combined and was highly abundant in two of the three fields. In the third field, however, A. mellifera and Agapostemon angelicus/texanus were equally abundant. Surprisingly, B. impatiens comprised only 1% of the total bees surveyed in all three fields combined, despite two of the fields having several managed hives each. As B. impatiens is not native to this region, it was not surprising that none were collected or observed in the field with no managed hives.

  13. Counting It Twice.

    Science.gov (United States)

    Schattschneider, Doris

    1991-01-01

    Provided are examples from many domains of mathematics that illustrate the Fubini Principle in its discrete version: the value of a summation over a rectangular array is independent of the order of summation. Included are: counting using partitions as in proof by pictures, combinatorial arguments, indirect counting as in the inclusion-exclusion…

  14. Low White Blood Cell Count

    Science.gov (United States)

    Symptoms Low white blood cell count By Mayo Clinic Staff A low white blood cell count (leukopenia) is a decrease ... of white blood cell (neutrophil). The definition of low white blood cell count varies from one medical ...

  15. A survey of mosquitoes breeding in used tires in Spain for the detection of imported potential vector species.

    Science.gov (United States)

    Roiz, D; Eritja, R; Escosa, R; Lucientes, J; Marquès, E; Melero-Alcíbar, R; Ruiz, S; Molina, R

    2007-06-01

    The used tire trade has facilitated the introduction, spread, and establishment of the Asian tiger mosquito, Aedes albopictus, and other mosquito species in several countries of America, Africa, Oceania, and Europe. A strategy for detecting these imported mosquito vectors was developed in Spain during 2003-2004 by EVITAR (multidisciplinary network for the study of viruses transmitted by arthropods and rodents). A survey in 45 locations found no invasive species. Eight autochthonous species of mosquitoes were detected in used tires, including Culex pipiens, Cx. hortensis, Cx. modestus, Anopheles atroparvus, An. claviger, Culiseta longiareolata, Cs. annulata, and Aedes caspius. Dominant species were Cx. pipiens and Cs. longiareolata. Aedes caspius was found in only once, near its natural breeding habitat. Considering the recent discovery of an established population of Ae. albopictus in Catalonia, the increasing commerce of used tires in Spain for recycling, storage, and recapping might greatly contribute to the rapid spread of this species across the Iberian Peninsula.

  16. Using Social Media to Measure the Contribution of Red List Species to the Nature-Based Tourism Potential of African Protected Areas.

    Directory of Open Access Journals (Sweden)

    Louise Willemen

    Full Text Available Cultural ecosystem services are defined by people's perception of the environment, which make them hard to quantify systematically. Methods to describe cultural benefits from ecosystems typically include resource-demanding survey techniques, which are not suitable to assess cultural ecosystem services for large areas. In this paper we explore a method to quantify cultural benefits through the enjoyment of natured-based tourism, by assessing the potential tourism attractiveness of species for each protected area in Africa using the IUCN's Red List of Threatened Species. We use the number of pictures of wildlife posted on a photo sharing website as a proxy for charisma, popularity, and ease of observation, as these factors combined are assumed to determine how attractive species are for the global wildlife tourist. Based on photo counts of 2473 African animals and plants, species that seem most attractive to nature-based tourism are the Lion, African Elephant and Leopard. Combining the photo counts with species range data, African protected areas with the highest potential to attract wildlife tourists based on attractive species occurrence were Samburu National Reserve in Kenya, Mukogodo Forest Reserve located just north of Mount Kenya, and Addo Elephant National Park in South-Africa. The proposed method requires only three data sources which are freely accessible and available online, which could make the proposed index tractable for large scale quantitative ecosystem service assessments. The index directly links species presence to the tourism potential of protected areas, making the connection between nature and human benefits explicit, but excludes other important contributing factors for tourism, such as accessibility and safety. This social media based index provides a broad understanding of those species that are popular globally; in many cases these are not the species of highest conservation concern.

  17. Using Social Media to Measure the Contribution of Red List Species to the Nature-Based Tourism Potential of African Protected Areas.

    Science.gov (United States)

    Willemen, Louise; Cottam, Andrew J; Drakou, Evangelia G; Burgess, Neil D

    2015-01-01

    Cultural ecosystem services are defined by people's perception of the environment, which make them hard to quantify systematically. Methods to describe cultural benefits from ecosystems typically include resource-demanding survey techniques, which are not suitable to assess cultural ecosystem services for large areas. In this paper we explore a method to quantify cultural benefits through the enjoyment of natured-based tourism, by assessing the potential tourism attractiveness of species for each protected area in Africa using the IUCN's Red List of Threatened Species. We use the number of pictures of wildlife posted on a photo sharing website as a proxy for charisma, popularity, and ease of observation, as these factors combined are assumed to determine how attractive species are for the global wildlife tourist. Based on photo counts of 2473 African animals and plants, species that seem most attractive to nature-based tourism are the Lion, African Elephant and Leopard. Combining the photo counts with species range data, African protected areas with the highest potential to attract wildlife tourists based on attractive species occurrence were Samburu National Reserve in Kenya, Mukogodo Forest Reserve located just north of Mount Kenya, and Addo Elephant National Park in South-Africa. The proposed method requires only three data sources which are freely accessible and available online, which could make the proposed index tractable for large scale quantitative ecosystem service assessments. The index directly links species presence to the tourism potential of protected areas, making the connection between nature and human benefits explicit, but excludes other important contributing factors for tourism, such as accessibility and safety. This social media based index provides a broad understanding of those species that are popular globally; in many cases these are not the species of highest conservation concern.

  18. Optimal Allocation of Sampling Effort in Depletion Surveys

    Science.gov (United States)

    We consider the problem of designing a depletion or removal survey as part of estimating animal abundance for populations with imperfect capture or detection rates. In a depletion survey, animals are captured from a given area, counted, and withheld from the population. This proc...

  19. Probing dark energy with cluster counts and cosmic shear power spectra: including the full covariance

    International Nuclear Information System (INIS)

    Takada, Masahiro; Bridle, Sarah

    2007-01-01

    Several dark energy experiments are available from a single large-area imaging survey and may be combined to improve cosmological parameter constraints and/or test inherent systematics. Two promising experiments are cosmic shear power spectra and counts of galaxy clusters. However, the two experiments probe the same cosmic mass density field in large-scale structure, therefore the combination may be less powerful than first thought. We investigate the cross-covariance between the cosmic shear power spectra and the cluster counts based on the halo model approach, where the cross-covariance arises from the three-point correlations of the underlying mass density field. Fully taking into account the cross-covariance, as well as non-Gaussian errors on the lensing power spectrum covariance, we find a significant cross-correlation between the lensing power spectrum signals at multipoles l∼10 3 and the cluster counts containing halos with masses M∼>10 14 M o-dot . Including the cross-covariance for the combined measurement degrades and in some cases improves the total signal-to-noise (S/N) ratios up to ∼±20% relative to when the two are independent. For cosmological parameter determination, the cross-covariance has a smaller effect as a result of working in a multi-dimensional parameter space, implying that the two observables can be considered independent to a good approximation. We also discuss the fact that cluster count experiments using lensing-selected mass peaks could be more complementary to cosmic shear tomography than mass-selected cluster counts of the corresponding mass threshold. Using lensing selected clusters with a realistic usable detection threshold ((S/N) cluster ∼6 for a ground-based survey), the uncertainty on each dark energy parameter may be roughly halved by the combined experiments, relative to using the power spectra alone

  20. Endangered Fish Species in Kansas: Historic vs Contemporary Distribution

    Science.gov (United States)

    Background/Question/Methods Kansas state has more freshwater fish species than other states in the west and northern US. Based on recent count, more than 140 fishes have been documented in Kansas rivers. And at least five are categorized as endangered species in Kansas (and thre...

  1. Unimodal models to relate species to environment

    NARCIS (Netherlands)

    Braak, ter C.J.F.

    1987-01-01

    To assess the impact of environmental change on biological communities knowledge about species-environment relationships is indispensable. Ecologists attempt to uncover the relationships between species and environment from data obtained from field surveys. In the survey, species are scored on their

  2. Hanford whole body counting manual

    International Nuclear Information System (INIS)

    Palmer, H.E.; Brim, C.P.; Rieksts, G.A.; Rhoads, M.C.

    1987-05-01

    This document, a reprint of the Whole Body Counting Manual, was compiled to train personnel, document operation procedures, and outline quality assurance procedures. The current manual contains information on: the location, availability, and scope of services of Hanford's whole body counting facilities; the administrative aspect of the whole body counting operation; Hanford's whole body counting facilities; the step-by-step procedure involved in the different types of in vivo measurements; the detectors, preamplifiers and amplifiers, and spectroscopy equipment; the quality assurance aspect of equipment calibration and recordkeeping; data processing, record storage, results verification, report preparation, count summaries, and unit cost accounting; and the topics of minimum detectable amount and measurement accuracy and precision. 12 refs., 13 tabs

  3. CalCOFI Egg Counts

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Fish egg counts and standardized counts for eggs captured in CalCOFI icthyoplankton nets (primarily vertical [Calvet or Pairovet], oblique [bongo or ring nets], and...

  4. Count-doubling time safety circuit

    International Nuclear Information System (INIS)

    Keefe, D.J.; McDowell, W.P.; Rusch, G.K.

    1981-01-01

    There is provided a nuclear reactor count-factor-increase time monitoring circuit which includes a pulse-type neutron detector, and means for counting the number of detected pulses during specific time periods. Counts are compared and the comparison is utilized to develop a reactor scram signal, if necessary

  5. Count-doubling time safety circuit

    Science.gov (United States)

    Rusch, Gordon K.; Keefe, Donald J.; McDowell, William P.

    1981-01-01

    There is provided a nuclear reactor count-factor-increase time monitoring circuit which includes a pulse-type neutron detector, and means for counting the number of detected pulses during specific time periods. Counts are compared and the comparison is utilized to develop a reactor scram signal, if necessary.

  6. Evaluation of unmanned aerial vehicle shape, flight path and camera type for waterfowl surveys: disturbance effects and species recognition

    Directory of Open Access Journals (Sweden)

    John F. McEvoy

    2016-03-01

    Full Text Available The use of unmanned aerial vehicles (UAVs for ecological research has grown rapidly in recent years, but few studies have assessed the disturbance impacts of these tools on focal subjects, particularly when observing easily disturbed species such as waterfowl. In this study we assessed the level of disturbance that a range of UAV shapes and sizes had on free-living, non-breeding waterfowl surveyed in two sites in eastern Australia between March and May 2015, as well as the capability of airborne digital imaging systems to provide adequate resolution for unambiguous species identification of these taxa. We found little or no obvious disturbance effects on wild, mixed-species flocks of waterfowl when UAVs were flown at least 60m above the water level (fixed wing models or 40m above individuals (multirotor models. Disturbance in the form of swimming away from the UAV through to leaving the water surface and flying away from the UAV was visible at lower altitudes and when fixed-wing UAVs either approached subjects directly or rapidly changed altitude and/or direction near animals. Using tangential approach flight paths that did not cause disturbance, commercially available onboard optical equipment was able to capture images of sufficient quality to identify waterfowl and even much smaller taxa such as swallows. Our results show that with proper planning of take-off and landing sites, flight paths and careful UAV model selection, UAVs can provide an excellent tool for accurately surveying wild waterfowl populations and provide archival data with fewer logistical issues than traditional methods such as manned aerial surveys.

  7. The Big Pumpkin Count.

    Science.gov (United States)

    Coplestone-Loomis, Lenny

    1981-01-01

    Pumpkin seeds are counted after students convert pumpkins to jack-o-lanterns. Among the activities involved, pupils learn to count by 10s, make estimates, and to construct a visual representation of 1,000. (MP)

  8. Demographic survey of black howler monkey (Alouatta pigra) in the Lachuá Eco-region in Alta Verapaz, Guatemala.

    Science.gov (United States)

    Rosales-Meda, Marleny; Estrada, Alejandro; López, Jorge E

    2008-03-01

    Guatemala harbors three species of primates (Alouatta palliata, Alouatta pigra and Ateles geoffroyi), but the distribution and state of conservation of populations of these species are poorly documented. In the case of A. pigra, populations have been studied recently and documented in several sites in Mexico and Belize, and only in one site in Guatemala (Tikal National Park). In this study, we report first-time population data for A. pigra existing in the Lachuá Eco-region in northwestern Guatemala. Surveys were conducted between September 2002 and April 2003 in the northern portion (32 km2) of the Lachuá National Park (LLNP; 145 km2) and in a fragmented landscape north of the protected area. In this latter area we surveyed a large forest fragment (17.14 km2), "Nueve Cerros", and 26 small forest fragments that ranged in size from 0.01 to 3.9 km2. Surveys resulted in a total count of 414 howler monkeys of which 403 belonged to 80 mixed-sex groups, four were solitary males, two were solitary females and five were found in two male groups. Standardized sampling effort among sites indicated 16.7 monkeys/100 survey hours at LLNP, 35.8 individuals/100 survey hours at "Nueve Cerros" and 71.0+/-62.2 individuals/100 survey hours in the forest fragments. Mean group size varied from 4.07 individuals at LLNP to 5.19 individuals in the forest fragments. Conservation problems for the black howler population surveyed are discussed, along with possible conservation scenarios.

  9. Simultaneous and separate, low background counting of beta rays and gamma rays using the phoswich principle

    International Nuclear Information System (INIS)

    Mayhugh, M.R.; Utts, B.K.; Shoffner, B.M.

    1978-01-01

    A phoswich constructed using thin calcium fluoride optically coupled to a thicker sodium iodide crystal and operated with pulse shape analysis equipment can be used as an efficient low background counting assembly. Low background in the beta ray counting channel is achieved by judicious choice of pure materials in the assembly and by operating the analysis equipment so as to reject background events which occur simultaneously in the sodium iodide crystal. Careful survey of construction materials and methods has resulted in reducing beta ray counting background to 0.6 c/min for a 2-inch diameter assembly. The radioactivity of typical building materials will be discussed. A pulse shape analyzer has been constructed which provides separately adjusted time windows and separate output information for the beta ray and gamma ray channels. The dual channel capability combined with the low beta ray background reduces the sample counting time significantly for typical laboratory samples. (author)

  10. Probing the Cosmological Principle in the counts of radio galaxies at different frequencies

    Science.gov (United States)

    Bengaly, Carlos A. P.; Maartens, Roy; Santos, Mario G.

    2018-04-01

    According to the Cosmological Principle, the matter distribution on very large scales should have a kinematic dipole that is aligned with that of the CMB. We determine the dipole anisotropy in the number counts of two all-sky surveys of radio galaxies. For the first time, this analysis is presented for the TGSS survey, allowing us to check consistency of the radio dipole at low and high frequencies by comparing the results with the well-known NVSS survey. We match the flux thresholds of the catalogues, with flux limits chosen to minimise systematics, and adopt a strict masking scheme. We find dipole directions that are in good agreement with each other and with the CMB dipole. In order to compare the amplitude of the dipoles with theoretical predictions, we produce sets of lognormal realisations. Our realisations include the theoretical kinematic dipole, galaxy clustering, Poisson noise, simulated redshift distributions which fit the NVSS and TGSS source counts, and errors in flux calibration. The measured dipole for NVSS is ~2 times larger than predicted by the mock data. For TGSS, the dipole is almost ~ 5 times larger than predicted, even after checking for completeness and taking account of errors in source fluxes and in flux calibration. Further work is required to understand the nature of the systematics that are the likely cause of the anomalously large TGSS dipole amplitude.

  11. 1-99 W. Hubbard St, May 2018, Lindsay Light Radiological Survey

    Science.gov (United States)

    Radiological Survey of Right-of-Way Utility Excavation.The count rates in the excavation ranged from 2,100 cpm to 4,200 cpm.No count rates were found at any time that exceeded the instrument specific threshold limits of 7,366 and 6,415 cpm.

  12. Corrections for the combined effects of decay and dead time in live-timed counting of short-lived radionuclides

    International Nuclear Information System (INIS)

    Fitzgerald, R.

    2016-01-01

    Studies and calibrations of short-lived radionuclides, for example "1"5O, are of particular interest in nuclear medicine. Yet counting experiments on such species are vulnerable to an error due to the combined effect of decay and dead time. Separate decay corrections and dead-time corrections do not account for this issue. Usually counting data are decay-corrected to the start time of the count period, or else instead of correcting the count rate, the mid-time of the measurement is used as the reference time. Correction factors are derived for both those methods, considering both extending and non-extending dead time. Series approximations are derived here and the accuracy of those approximations are discussed. - Highlights: • Derived combined effects of decay and dead time. • Derived for counting systems with extending or non-extending dead times. • Derived series expansions for both midpoint and decay-to-start-time methods. • Useful for counting experiments with short-lived radionuclides. • Examples given for "1"5O, used in PET scanning.

  13. Galaxy number counts: Pt. 2

    International Nuclear Information System (INIS)

    Metcalfe, N.; Shanks, T.; Fong, R.; Jones, L.R.

    1991-01-01

    Using the Prime Focus CCD Camera at the Isaac Newton Telescope we have determined the form of the B and R galaxy number-magnitude count relations in 12 independent fields for 21 m ccd m and 19 m ccd m 5. The average galaxy count relations lie in the middle of the wide range previously encompassed by photographic data. The field-to-field variation of the counts is small enough to define the faint (B m 5) galaxy count to ±10 per cent and this variation is consistent with that expected from galaxy clustering considerations. Our new data confirm that the B, and also the R, galaxy counts show evidence for strong galaxy luminosity evolution, and that the majority of the evolving galaxies are of moderately blue colour. (author)

  14. Statistical approaches to the analysis of point count data: A little extra information can go a long way

    Science.gov (United States)

    Farnsworth, G.L.; Nichols, J.D.; Sauer, J.R.; Fancy, S.G.; Pollock, K.H.; Shriner, S.A.; Simons, T.R.; Ralph, C. John; Rich, Terrell D.

    2005-01-01

    Point counts are a standard sampling procedure for many bird species, but lingering concerns still exist about the quality of information produced from the method. It is well known that variation in observer ability and environmental conditions can influence the detection probability of birds in point counts, but many biologists have been reluctant to abandon point counts in favor of more intensive approaches to counting. However, over the past few years a variety of statistical and methodological developments have begun to provide practical ways of overcoming some of the problems with point counts. We describe some of these approaches, and show how they can be integrated into standard point count protocols to greatly enhance the quality of the information. Several tools now exist for estimation of detection probability of birds during counts, including distance sampling, double observer methods, time-depletion (removal) methods, and hybrid methods that combine these approaches. Many counts are conducted in habitats that make auditory detection of birds much more likely than visual detection. As a framework for understanding detection probability during such counts, we propose separating two components of the probability a bird is detected during a count into (1) the probability a bird vocalizes during the count and (2) the probability this vocalization is detected by an observer. In addition, we propose that some measure of the area sampled during a count is necessary for valid inferences about bird populations. This can be done by employing fixed-radius counts or more sophisticated distance-sampling models. We recommend any studies employing point counts be designed to estimate detection probability and to include a measure of the area sampled.

  15. Counting statistics in radioactivity measurements

    International Nuclear Information System (INIS)

    Martin, J.

    1975-01-01

    The application of statistical methods to radioactivity measurement problems is analyzed in several chapters devoted successively to: the statistical nature of radioactivity counts; the application to radioactive counting of two theoretical probability distributions, Poisson's distribution law and the Laplace-Gauss law; true counting laws; corrections related to the nature of the apparatus; statistical techniques in gamma spectrometry [fr

  16. Correlation between total lymphocyte count, hemoglobin, hematocrit and CD4 count in HIV patients in Nigeria.

    Science.gov (United States)

    Emuchay, Charles Iheanyichi; Okeniyi, Shemaiah Olufemi; Okeniyi, Joshua Olusegun

    2014-04-01

    The expensive and technology limited setting of CD4 count testing is a major setback to the initiation of HAART in a resource limited country like Nigeria. Simple and inexpensive tools such as Hemoglobin (Hb) measurement and Total Lymphocyte Count (TLC) are recommended as substitute marker. In order to assess the correlations of these parameters with CD4 count, 100 "apparently healthy" male volunteers tested HIV positive aged ≥ 20 years but ≤ 40 years were recruited and from whom Hb, Hct, TLC and CD4 count were obtained. The correlation coefficients, R, the Nash-Sutcliffe Coefficient of Efficiency (CoE) and the p-values of the ANOVA model of Hb, Hct and TLC with CD4 count were assessed. The assessments show that there is no significant relationship of any of these parameters with CD4 count and the correlation coefficients are very weak. This study shows that Hb, Hct and TLC cannot be substitute for CD4 count as this might lead to certain individuals' deprivation of required treatment.

  17. Microbiological survey of a South African poultry processing plant.

    Science.gov (United States)

    Geornaras, I; de Jesus, A; van Zyl, E; von Holy, A

    1995-01-01

    Bacterial populations associated with poultry processing were determined on neck skin samples, equipment surfaces and environmental samples by replicate surveys. Aerobic plate counts, Enterobacteriaceae counts, Enterobacteriaceae counts and Pseudomonas counts were performed by standard procedures and the prevalence of Listeria, presumptive Salmonella and Staphylococcus aureus determined. Statistically significant (P defeathering curtains, shackles and conveyor belts repeatedly showed aerobic plate counts in excess of 5.0 log CFU 25 cm-2. Aerobic plate counts of scald tank and spinchiller water were 2 log CFU ml-1 higher than those of potable water samples. Bacterial numbers of the air in the "dirty" area were higher than those of the "clean" area. Listeria, presumptive Salmonella and Staphylococcus aureus were isolated from 27.6, 51.7 and 24.1% of all product samples, respectively, and Listeria and Staphylococcus aureus were also isolated from selected equipment surfaces.

  18. Effects of EMF Emissions from Cables and Junction Boxes on Marine Species

    Energy Technology Data Exchange (ETDEWEB)

    Dhanak, Manhar [Florida Atlantic Univ., Boca Raton, FL (United States); Spieler, Richard [Nova Southeastern Univ., Fort Lauderdale, FL (United States); Kilfoyle, Kirk [Nova Southeastern Univ., Fort Lauderdale, FL (United States); Jermain, Robert F. [Nova Southeastern Univ., Fort Lauderdale, FL (United States); Frankenfield, John [Florida Atlantic Univ., Boca Raton, FL (United States); Ravenna, Shirley [Florida Atlantic Univ., Boca Raton, FL (United States); Dibiasio, Christopher [Florida Atlantic Univ., Boca Raton, FL (United States); Coulson, Robert [Florida Atlantic Univ., Boca Raton, FL (United States); Henderson, Ed [Florida Atlantic Univ., Boca Raton, FL (United States); Venezia, William [Naval Surface Warfare Center (NSWC), Carderock Division (United States)

    2016-09-29

    typifies a setting representative of an offshore location where a MHK device may be sited. Background electromagnetic field (EMF) levels and EMF emissions due to submarine cables were measured using a custom E-field sensor and a commercial magnetometer deployed from an autonomous underwater vehicle (AUV) at various fixed altitudes above the seafloor. EMF signatures detected from power cables and junction boxes are contrasted against ambient background levels and other EMF sources. The potential responses of local marine species were observed at selected representative locations using divers on SCUBA, complemented with fixed cameras on the sea bottom and by a set of video cameras mounted on the AUV. The objectives of the study were: 1) to characterize the EMF emission levels associated with submarine cables 2) to monitor potential responses of aquatic animals to the emissions and 3) to develop an associated database of field observations. As control, observations of EMF levels and in situ marine species were conducted with power in the cable turned off. Good quality measurements of EMF emissions were obtained using the mobile AUV platform and the data from the surveys were used to develop contour maps of the EMF levels in the water column above the live cable as well as to provide information about how the field decays away from the cable. The measurements show good agreement with theoretical models of the how EMF levels decay away from the cable in deep and shallow water environment. Electric fields in excess of 200µV/m were measured in the vicinity of the cable during the power on state. Quarterly surveys by SCUBA divers were conducted, using point and transect count methods, over a period of one year at three locations, one at a shallow site where the water depth is approximately 5m, and the other at the Barracuda Reef where the water depth is approximately 10m. The sampling results were analyzed to determine if the presence of an SFOMF generated EMF alters: (1

  19. A nationwide survey of ixodid tick species recovered from domestic dogs and cats in Japan in 2011.

    Science.gov (United States)

    Iwakami, Shinya; Ichikawa, Yasuaki; Inokuma, Hisashi

    2014-10-01

    A nationwide survey of ixodid ticks was performed in 2011, during which a total of 4237 and 298 ticks were recovered from 1162 dogs and 136 cats, respectively. Haemaphysalis longicornis was the most frequently found tick species on canine hosts (739 dogs), followed by H. flava (166), Ixodes ovatus (139), and Rhipicephalus sanguineus sensu lato (70). H. hystricis, H. japonica, H. megaspinosa, H. formosensis, H. campanulata, H. ias, I. nipponensis, I. persulcatus, and Amblyomma testudinarium were also recovered. H. longicornis was also the most frequently found species on feline hosts (52 cats), followed by I. ovatus (34), A. testudinarium (19), and H. flava (12). H. hystricis, H. japonica, H. megaspinosa, I. nipponensis, I. persulcatus, I. granulatus and R. sanguineus sensu lato were also recovered from cats. The three major species of ticks found on dogs and cats, H. longicornis, H. flava, and I. ovatus, displayed a wide geographical distribution, with specimens found throughout northern and southern Japan. R. sanguineus sensu lato was primarily recovered in Okinawa, but was also found in Kanagawa, Wakayama, Hiroshima, and Yamaguchi Prefectures. A. testudinarium was mainly distributed throughout western Japan, but small numbers were also recovered from Gumma and Shizuoka Prefectures. H. longicornis was more frequently found on dogs in rural areas than those in urban or suburban areas. Exposure to woodland environments was significantly associated with H. flava and I. ovatus in dogs. Dogs in urban or suburban areas encountered R. sanguineus sensu lato more often than other tick species. Most of the cats surveyed in the present study were from rural areas. In the present study, H. hystricis and R. sanguineus sensu lato were found on cats for the first time in Japan. Copyright © 2014 Elsevier GmbH. All rights reserved.

  20. It counts who counts: an experimental evaluation of the importance of observer effects on spotlight count estimates

    DEFF Research Database (Denmark)

    Sunde, Peter; Jessen, Lonnie

    2013-01-01

    observers with respect to their ability to detect and estimate distance to realistic animal silhouettes at different distances. Detection probabilities were higher for observers experienced in spotlighting mammals than for inexperienced observers, higher for observers with a hunting background compared...... with non-hunters and decreased as function of age but were independent of sex or educational background. If observer-specific detection probabilities were applied to real counting routes, point count estimates from inexperienced observers without a hunting background would only be 43 % (95 % CI, 39...

  1. Two new species of Chaetognatha from the Andaman Sea, Indian Ocean

    Digital Repository Service at National Institute of Oceanography (India)

    Nair, V.R.; Panampunnayil, S.U.; Pillai, H.U.K.; Gireesh, R.

    fins and smaller size. S. meenakshiae has distinct characters, such as a small size, lower tail percentage, lower meristic counts and a difference in eye pigmentation as compared with three related species. The two new species appear to be endemic...

  2. Single-species versus dual-species probiotic supplementation as an emerging therapeutic strategy for obesity.

    Science.gov (United States)

    Karimi, G; Jamaluddin, R; Mohtarrudin, N; Ahmad, Z; Khazaai, H; Parvaneh, M

    2017-10-01

    Recent studies have reported beneficial effects of specific probiotics on obesity. However, the difference in the anti-obesity effects of probiotics as single species and dual species is still uncertain. Therefore, we aimed to compare the efficacy of single and dual species of bacteria on markers of obesity in high-fat diet-induced obese rats. A total of 40 male Sprague-Dawley rats were assigned to one of five groups of varying diets as follows: standard diet, high fat diet (HFD), HFD supplemented with Lactobacillus casei strain Shirota, HFD supplemented with Bifidobacterium longum and HFD supplemented with a mixture of these two bacterial species. After 15 weeks of supplementation, the animals were examined for changes in body weight, body fat, total count of bacteria in fecal, blood serum lipid profile, leptin, adiponectin and inflammatory biomarkers. Histological analysis of the liver and adipose tissue was performed and the hepatic mRNA expression levels of genes related to lipid metabolism were measured. It was found that probiotic supplementation of either B. longum or a mixture of B. longum and LcS bacteria significantly reduced weight and triglycerides in the HFD groups. Supplementation of B. longum bacteria showed better results in terms of modulating leptin level, fat mass, adipocyte size and lipoprotein lipase expression, as well as increasing adiponectin and peroxisome proliferator-activated receptors-γ expression compared to dual species of bacteria. No significant differences were observed in the total count of fecal bacteria, glucose and inflammatory biomarker levels between supplemented groups. B. longum supplementation in obesity was more beneficial in metabolic profile changes than the mixture species. Copyright © 2017 The Italian Society of Diabetology, the Italian Society for the Study of Atherosclerosis, the Italian Society of Human Nutrition, and the Department of Clinical Medicine and Surgery, Federico II University. Published by Elsevier B

  3. A SURVEY OF THE SPECIES AND DISTRIBUTION OF AEDES AT SEAPORTS AND AIRPORTS OF IRIAN JAYA

    Directory of Open Access Journals (Sweden)

    Sumengen Sumengen

    2012-09-01

    Full Text Available Walaupun penyakit demam berdarah terdapat dimana-mana didaerah Asia Tenggara termasuk Indonesia, namun demikian belum pernah dilaporkan adanya di propinsi Irian Jaya. Vector utama penyakit tersebut adalah A. (Stegomya aegypti meskipun A. (S albopictus juga dapat menjadi vectornya. Penyakit lain yang terpenting dapat ditularkan oleh A. aegypti ialah yellow fever, dimana virusnya hanya terdapat di Afrika dan Amerika. Mengingat letak geografis yang sangat dekat dan kommunikasi yang regular baik melalui laut dan udara dengan negara-negara seperti Philipana, Thailand, Singapura, Vietnam, India, Ceylon dan Indonesia, maka setiap saat kedua penyakit tersebut kemungkinan dapat menginfeksi penduduk Irian Jaya. Untuk membantu mempelajari apakah infeksi dapat terjadi maka dari bulan September sampai dengan Desember 1968 telah dilakukan survey pendahuluan untuk mengetahui species Aedes yang ada dan distribusinya di pelabuhan-pelabuhan laut maupun udara terpenting di Irian Jaya. Survey ini dilakukan dengan cara mengadakan penangkapan serta pemeriksaan nyamuk dan larva yang terdapat pada setiap bangunan didaerah pelabuhan laut maupun udara. Berdasarkan hasil survey yang dilakukan ternyata ditemukan adanya 7 species Aedes yaitu, A. aegypti, A. albopictus, A. (S scutellaris, A. (Finlaya koehi, A. (Ochlerotatus vigilax, A. (S alboleneatus, dan A. (F novalbitarsis. Walaupun Van Den Assem & Bonne Wepster (1964 menyatakan bahwa sebagian besar di wilayah Irian Jaya masih belum ditemukan adanya A. aegypti tetapi pada penelitian ini ternyata dari 11 pelabuhan laut dan udara, 9 diantaranya ditemukan A. aegypti. Timbulnya A. aegypti pada beberapa kota diwilayah Irian Jaya pada tahun 1968 mungkin disebabkan karena pemindahan vector tersebut dari daerah-daerah lain melalui kapal laut maupun udara yang merupakan alat pengangkut dari satu daerah kedaerah lain.

  4. You can count on the motor cortex: Finger counting habits modulate motor cortex activation evoked by numbers

    Science.gov (United States)

    Tschentscher, Nadja; Hauk, Olaf; Fischer, Martin H.; Pulvermüller, Friedemann

    2012-01-01

    The embodied cognition framework suggests that neural systems for perception and action are engaged during higher cognitive processes. In an event-related fMRI study, we tested this claim for the abstract domain of numerical symbol processing: is the human cortical motor system part of the representation of numbers, and is organization of numerical knowledge influenced by individual finger counting habits? Developmental studies suggest a link between numerals and finger counting habits due to the acquisition of numerical skills through finger counting in childhood. In the present study, digits 1 to 9 and the corresponding number words were presented visually to adults with different finger counting habits, i.e. left- and right-starters who reported that they usually start counting small numbers with their left and right hand, respectively. Despite the absence of overt hand movements, the hemisphere contralateral to the hand used for counting small numbers was activated when small numbers were presented. The correspondence between finger counting habits and hemispheric motor activation is consistent with an intrinsic functional link between finger counting and number processing. PMID:22133748

  5. Total lymphocyte count and subpopulation lymphocyte counts in relation to dietary intake and nutritional status of peritoneal dialysis patients.

    Science.gov (United States)

    Grzegorzewska, Alicja E; Leander, Magdalena

    2005-01-01

    Dietary deficiency causes abnormalities in circulating lymphocyte counts. For the present paper, we evaluated correlations between total and subpopulation lymphocyte counts (TLC, SLCs) and parameters of nutrition in peritoneal dialysis (PD) patients. Studies were carried out in 55 patients treated with PD for 22.2 +/- 11.4 months. Parameters of nutritional status included total body mass, lean body mass (LBM), body mass index (BMI), and laboratory indices [total protein, albumin, iron, ferritin, and total iron binding capacity (TIBC)]. The SLCs were evaluated using flow cytometry. Positive correlations were seen between TLC and dietary intake of niacin; TLC and CD8 and CD16+56 counts and energy delivered from protein; CD4 count and beta-carotene and monounsaturated fatty acids 17:1 intake; and CD19 count and potassium, copper, vitamin A, and beta-carotene intake. Anorexia negatively influenced CD19 count. Serum albumin showed correlations with CD4 and CD19 counts, and LBM with CD19 count. A higher CD19 count was connected with a higher red blood cell count, hemoglobin, and hematocrit. Correlations were observed between TIBC and TLC and CD3 and CD8 counts, and between serum Fe and TLC and CD3 and CD4 counts. Patients with a higher CD19 count showed a better clinical-laboratory score, especially less weakness. Patients with a higher CD4 count had less expressed insomnia. Quantities of ingested vitamins and minerals influence lymphocyte counts in the peripheral blood of PD patients. Evaluation of TLC and SLCs is helpful in monitoring the effectiveness of nutrition in these patients.

  6. Clinical aspects of Candida species carriage in saliva of xerotomic subjects.

    Science.gov (United States)

    Torres, S R; Peixoto, C B; Caldas, D M; Silva, E B; Magalhães, F A C; Uzeda, M; Nucci, M

    2003-10-01

    In order to investigate the clinical factors that might influence the diversity and the degree of Candida species carriage in saliva, we conducted a cross-sectional study with 133 patients with complaints of xerostomia. Anamnesis, oral examination and collection of chewing-stimulated whole saliva were performed. The samples of saliva were kept refrigerated until they were plated onto CHROMagar Candida; cfu were counted and Candida species were identified by standard methods. There was a high prevalence of mixed Candida colonization. No relationship was found between total Candida cfu counts and variables like gender, age, place of origin, underlying diseases, exposure to medications (except antibiotics), daily habits and salivary flow rates. Oral candidiasis, antibiotic exposure and dental prosthesis wearing were associated with relatively high Candida counts in saliva. Low salivary flow rates predisposed to intense colonization by C. albicans and C. parapsilosis.

  7. Aerial Survey Counts of Harbor Seals in Coastal Alaska (1998-2002)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — This dataset supports efforts to estimate the abundance and trends in population size of Alaska harbor seals. Annual surveys of harbor seal populations are...

  8. Aerial Survey Counts of Harbor Seals in Coastal Alaska (2003-2011)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — This dataset supports efforts to estimate the abundance and trends in population size of Alaska harbor seals. Annual surveys of harbor seal populations are...

  9. Detection probability of gyrfalcons and other cliff-nesting raptors during aerial surveys in Alaska

    Science.gov (United States)

    Booms, Travis L.; Fuller, Mark R.; Schempf, Philip F.; McCaffery, Brian J.; Lindberg, Mark S.; Watson, Richard T.; Cade, Tom J.; Fuller, Mark; Hunt, Grainger; Potapov, Eugene

    2011-01-01

    Assessing the status of Gyrfalcons (Falco rusticolus) and other cliffnesting raptors as the Arctic climate changes often requires aerial surveys of their breeding habitats. Because traditional, count-based surveys that do not adjust for differing detection probabilities can provide faulty inference about population status (Link and Sauer 1998, Thompson 2002), it will be important to incorporate measures of detection probability into survey methods whenever possible. To evaluate the feasibility of this, we conducted repeated aerial surveys for breeding cliff-nesting raptors on the Yukon Delta National Wildlife Refuge (YDNWR) in western Alaska to estimate detection probabilities of Gyrfalcons, Golden Eagles (Aquila chrysaetos), Rough-legged Hawks (Buteo lagopus), and also Common Ravens (Corvus corax). Using the program PRESENCE, we modeled detection histories of each species based on single species occupancy modeling following MacKenzie et al. (2002, 2006). We used different observers during four helicopter replicate surveys in the Kilbuck Mountains and five fixed-wing replicate surveys in the Ingakslugwat Hills (hereafter called Volcanoes) near Bethel, Alaska. We used the following terms and definitions throughout: Survey Site: site of a nest used previously by a raptor and marked with a GPS-obtained latitude and longitude accurate to within 20 m. All GPS locations were obtained in prior years from a helicopter hovering approximately 10?20 m from a nest. The site was considered occupied if a bird or an egg was detected within approximately 500 m of the nest and this area served as our sampling unit. When multiple historical nests were located on a single cliff, we used only one GPS location to locate the survey site. Detection probability (p): the probability of a species being detected at a site given the site is occupied. Occupancy (?): the probability that the species of interest is present at a site during the survey period. A site was considered occupied if the

  10. HIGH-RESOLUTION IMAGING OF THE ATLBS REGIONS: THE RADIO SOURCE COUNTS

    Energy Technology Data Exchange (ETDEWEB)

    Thorat, K.; Subrahmanyan, R.; Saripalli, L.; Ekers, R. D., E-mail: kshitij@rri.res.in [Raman Research Institute, C. V. Raman Avenue, Sadashivanagar, Bangalore 560080 (India)

    2013-01-01

    The Australia Telescope Low-brightness Survey (ATLBS) regions have been mosaic imaged at a radio frequency of 1.4 GHz with 6'' angular resolution and 72 {mu}Jy beam{sup -1} rms noise. The images (centered at R.A. 00{sup h}35{sup m}00{sup s}, decl. -67 Degree-Sign 00'00'' and R.A. 00{sup h}59{sup m}17{sup s}, decl. -67 Degree-Sign 00'00'', J2000 epoch) cover 8.42 deg{sup 2} sky area and have no artifacts or imaging errors above the image thermal noise. Multi-resolution radio and optical r-band images (made using the 4 m CTIO Blanco telescope) were used to recognize multi-component sources and prepare a source list; the detection threshold was 0.38 mJy in a low-resolution radio image made with beam FWHM of 50''. Radio source counts in the flux density range 0.4-8.7 mJy are estimated, with corrections applied for noise bias, effective area correction, and resolution bias. The resolution bias is mitigated using low-resolution radio images, while effects of source confusion are removed by using high-resolution images for identifying blended sources. Below 1 mJy the ATLBS counts are systematically lower than the previous estimates. Showing no evidence for an upturn down to 0.4 mJy, they do not require any changes in the radio source population down to the limit of the survey. The work suggests that automated image analysis for counts may be dependent on the ability of the imaging to reproduce connecting emission with low surface brightness and on the ability of the algorithm to recognize sources, which may require that source finding algorithms effectively work with multi-resolution and multi-wavelength data. The work underscores the importance of using source lists-as opposed to component lists-and correcting for the noise bias in order to precisely estimate counts close to the image noise and determine the upturn at sub-mJy flux density.

  11. Species-specific diagnostics of Apis mellifera trypanosomatids: A nine-year survey (2007-2015) for trypanosomatids and microsporidians in Serbian honey bees.

    Science.gov (United States)

    Stevanovic, Jevrosima; Schwarz, Ryan S; Vejnovic, Branislav; Evans, Jay D; Irwin, Rebecca E; Glavinic, Uros; Stanimirovic, Zoran

    2016-09-01

    In this study, honey bees collected in Serbia over 9 consecutive years (2007-2015) were retrospectively surveyed to determine the prevalence of eukaryotic gut parasites by molecular screening of archival DNA samples. We developed species-specific primers for PCR to detect the two known honey bee trypanosomatid species, Crithidia mellificae and the recently described Lotmaria passim. These primers were validated for target specificity under single and mixed-species conditions as well as against the bumblebee trypanosomatid Crithidia bombi. Infections by Nosema apis and Nosema ceranae (Microsporidia) were also determined using PCR. Samples from 162 colonies (18 from each year) originating from 57 different localities were surveyed. L. passim was detected in every year with an overall frequency of 62.3% and annual frequencies ranging from 38.9% to 83.3%. This provides the earliest confirmed record to date for L. passim and the first report of this species in Serbia. N. ceranae was ubiquitous, occurring in every year and at 95.7% overall frequency, ranging annually from 83.3% to 100%. The majority of colonies (60.5%) were co-infected with L. passim and N. ceranae, but colony infections by each species were statistically independent of one another over the nine years. Although C. mellificae and N. apis have both been reported recently at low frequency in Europe, neither of these species was detected in Serbia. These results support the hypothesis that L. passim has predominated over C. mellificae in A. mellifera during the past decade. Copyright © 2016 Elsevier Inc. All rights reserved.

  12. Heterogeneous counting on filter support media

    International Nuclear Information System (INIS)

    Long, E.; Kohler, V.; Kelly, M.J.

    1976-01-01

    Many investigators in the biomedical research area have used filter paper as the support for radioactive samples. This means that a heterogeneous counting of sample sometimes results. The count rate of a sample on a filter will be affected by positioning, degree of dryness, sample application procedure, the type of filter, and the type of cocktail used. Positioning of the filter (up or down) in the counting vial can cause a variation of 35% or more when counting tritiated samples on filter paper. Samples of varying degrees of dryness when added to the counting cocktail can cause nonreproducible counts if handled improperly. Count rates starting at 2400 CPM initially can become 10,000 CPM in 24 hours for 3 H-DNA (deoxyribonucleic acid) samples dried on standard cellulose acetate membrane filters. Data on cellulose nitrate filters show a similar trend. Sample application procedures in which the sample is applied to the filter in a small spot or on a large amount of the surface area can cause nonreproducible or very low counting rates. A tritiated DNA sample, when applied topically, gives a count rate of 4,000 CPM. When the sample is spread over the whole filter, 13,400 CPM are obtained with a much better coefficient of variation (5% versus 20%). Adding protein carrier (bovine serum albumin-BSA) to the sample to trap more of the tritiated DNA on the filter during the filtration process causes a serious beta absorption problem. Count rates which are one-fourth the count rate applied to the filter are obtained on calibrated runs. Many of the problems encountered can be alleviated by a proper choice of filter and the use of a liquid scintillation cocktail which dissolves the filter. Filter-Solv has been used to dissolve cellulose nitrate filters and filters which are a combination of cellulose nitrate and cellulose acetate. Count rates obtained for these dissolved samples are very reproducible and highly efficient

  13. Hydraulic and biological analysis of the passability of select fish species at the U.S. Geological Survey streamgaging weir at Blackwells Mills, New Jersey

    Science.gov (United States)

    Haro, Alexander J.; Mulligan, Kevin; Suro, Thomas P.; Noreika, John; McHugh, Amy

    2017-10-16

    Recent efforts to advance river connectivity for the Millstone River watershed in New Jersey have led to the evaluation of a low-flow gauging weir that spans the full width of the river. The methods and results of a desktop modelling exercise were used to evaluate the potential ability of three anadromous fish species (Alosa sapidissima [American shad], Alosa pseudoharengus [alewife], and Alosa aestivalis [blueback herring]) to pass upstream over the U.S. Geological Survey Blackwells Mills streamgage (01402000) and weir on the Millstone River, New Jersey, at various streamflows, and to estimate the probability that the weir will be passable during the spring migratory season. Based on data from daily fishway counts downstream from the Blackwells Mills streamgage and weir between 1996 and 2014, the general migratory period was defined as April 14 to May 28. Recorded water levels and flow data were used to theoretically estimate water depths and velocities over the weir, as well as flow exceedances occurring during the migratory period.Results indicate that the weir is a potential depth barrier to fish passage when streamflows are below 200 cubic feet per second using a 1-body-depth criterion for American shad (the largest fish among the target species). Streamflows in that range occur on average 35 percent of the time during the migratory period. An increase of the depth criterion to 2 body depths causes the weir to become a possible barrier to passage when flows are below 400 cubic feet per second. Streamflows in that range occur on average 73 percent of the time during the migration season. Average cross-sectional velocities at several points along the weir do not seem to be limiting to the fish migration, but maximum theoretical velocities estimated without friction loss over the face of the weir could be potentially limiting.

  14. LENSING NOISE IN MILLIMETER-WAVE GALAXY CLUSTER SURVEYS

    International Nuclear Information System (INIS)

    Hezaveh, Yashar; Vanderlinde, Keith; Holder, Gilbert; De Haan, Tijmen

    2013-01-01

    We study the effects of gravitational lensing by galaxy clusters of the background of dusty star-forming galaxies (DSFGs) and the cosmic microwave background (CMB), and examine the implications for Sunyaev-Zel'dovich-based (SZ) galaxy cluster surveys. At the locations of galaxy clusters, gravitational lensing modifies the probability distribution of the background flux of the DSFGs as well as the CMB. We find that, in the case of a single-frequency 150 GHz survey, lensing of DSFGs leads both to a slight increase (∼10%) in detected cluster number counts (due to a ∼50% increase in the variance of the DSFG background, and hence an increased Eddington bias) and a rare (occurring in ∼2% of clusters) 'filling-in' of SZ cluster signals by bright strongly lensed background sources. Lensing of the CMB leads to a ∼55% reduction in CMB power at the location of massive galaxy clusters in a spatially matched single-frequency filter, leading to a net decrease in detected cluster number counts. We find that the increase in DSFG power and decrease in CMB power due to lensing at cluster locations largely cancel, such that the net effect on cluster number counts for current SZ surveys is subdominant to Poisson errors

  15. The SCUBA-2 Cosmology Legacy Survey: 850 μm maps, catalogues and number counts

    NARCIS (Netherlands)

    Geach, J. E.; Dunlop, J. S.; Halpern, M.; Smail, Ian; van der Werf, P.; Alexander, D. M.; Almaini, O.; Aretxaga, I.; Arumugam, V.; Asboth, V.; Banerji, M.; Beanlands, J.; Best, P. N.; Blain, A. W.; Birkinshaw, M.; Chapin, E. L.; Chapman, S. C.; Chen, C.-C.; Chrysostomou, A.; Clarke, C.; Clements, D. L.; Conselice, C.; Coppin, K. E. K.; Cowley, W. I.; Danielson, A. L. R.; Eales, S.; Edge, A. C.; Farrah, D.; Gibb, A.; Harrison, C. M.; Hine, N. K.; Hughes, D.; Ivison, R. J.; Jarvis, M.; Jenness, T.; Jones, S. F.; Karim, A.; Koprowski, M.; Knudsen, K. K.; Lacey, C. G.; Mackenzie, T.; Marsden, G.; McAlpine, K.; McMahon, R.; Meijerink, R.; Michałowski, M. J.; Oliver, S. J.; Page, M. J.; Peacock, J. A.; Rigopoulou, D.; Robson, E. I.; Roseboom, I.; Rotermund, K.; Scott, Douglas; Serjeant, S.; Simpson, C.; Simpson, J. M.; Smith, D. J. B.; Spaans, M.; Stanley, F.; Stevens, J. A.; Swinbank, A. M.; Targett, T.; Thomson, A. P.; Valiante, E.; Wake, D. A.; Webb, T. M. A.; Willott, C.; Zavala, J. A.; Zemcov, M.

    2017-01-01

    We present a catalogue of ˜3000 submillimetre sources detected (≥3.5σ) at 850 μm over ˜5 deg2 surveyed as part of the James Clerk Maxwell Telescope (JCMT) SCUBA-2 Cosmology Legacy Survey (S2CLS). This is the largest survey of its kind at 850 μm, increasing the sample size of 850 μm selected

  16. Genital mycoplasmas in semen samples of males attending a tertiary care hospital in Nigeria: any role in sperm count reduction?

    Science.gov (United States)

    Agbakoba, N R; Adetosoye, A I; Ikechebelu, J I

    2007-06-01

    Semen samples from 54 married men attending the outpatient clinics for problems of infertility and routine semen analysis were examined for the presence of genital mycoplasmas. The mean age of the men was 36.1 years with a range of 25 55 years. Majority of the men 57.4% (31 of 54) were in their fourth decade of life (30 39 years). This age group also had the highest percentage 57.2% (8 of 14) of positive isolates of genital mycoplasmas on semen culture. A total of 21 organisms obtained from 14 (26.0%) positive samples were isolated. Mycoplasma and Ureaplasma spp. separately isolated from the samples yielded frequencies of 1 (1.9%) and 6 (11.1%) respectively and the remaining 7 (13.0%) samples were infected with both organisms. A breakdown of the mycoplasma species include 5 (23.8%) M. hominis, 2 (9.5%) M. fermentans and 1 (4.8%) M. penetrans. Apart from one isolate of M. hominis other Mycoplasma species were found in association with Ureaplasma species. Fifteen (71.4%) of the 21 isolates [8 (53.3%) ureaplasmas and 7 (46.7%) mycoplasmas] were isolated from samples with sperm counts less than 20 million/ml while the remaining 6 (21.6%) isolates [5 (83.3%) ureaplasmas and 1 (16.7) mycoplasma] were from samples with counts greater than 20 million/ml. This finding could indicate a possible influence of genital mycoplasmas especially mycoplasmas species on sperm count.

  17. An emperor penguin population estimate: the first global, synoptic survey of a species from space.

    Science.gov (United States)

    Fretwell, Peter T; Larue, Michelle A; Morin, Paul; Kooyman, Gerald L; Wienecke, Barbara; Ratcliffe, Norman; Fox, Adrian J; Fleming, Andrew H; Porter, Claire; Trathan, Phil N

    2012-01-01

    Our aim was to estimate the population of emperor penguins (Aptenodytes fosteri) using a single synoptic survey. We examined the whole continental coastline of Antarctica using a combination of medium resolution and Very High Resolution (VHR) satellite imagery to identify emperor penguin colony locations. Where colonies were identified, VHR imagery was obtained in the 2009 breeding season. The remotely-sensed images were then analysed using a supervised classification method to separate penguins from snow, shadow and guano. Actual counts of penguins from eleven ground truthing sites were used to convert these classified areas into numbers of penguins using a robust regression algorithm.We found four new colonies and confirmed the location of three previously suspected sites giving a total number of emperor penguin breeding colonies of 46. We estimated the breeding population of emperor penguins at each colony during 2009 and provide a population estimate of ~238,000 breeding pairs (compared with the last previously published count of 135,000-175,000 pairs). Based on published values of the relationship between breeders and non-breeders, this translates to a total population of ~595,000 adult birds.There is a growing consensus in the literature that global and regional emperor penguin populations will be affected by changing climate, a driver thought to be critical to their future survival. However, a complete understanding is severely limited by the lack of detailed knowledge about much of their ecology, and importantly a poor understanding of their total breeding population. To address the second of these issues, our work now provides a comprehensive estimate of the total breeding population that can be used in future population models and will provide a baseline for long-term research.

  18. Upgradation of automatic liquid scintillation counting system

    International Nuclear Information System (INIS)

    Bhattacharya, Sadhana; Behere, Anita; Sonalkar, S.Y.; Vaidya, P.P.

    2001-01-01

    This paper describes the upgradation of Microprocessor based Automatic Liquid Scintillation Counting systems (MLSC). This system was developed in 1980's and subsequently many systems were manufactured and supplied to Environment Survey labs at various Nuclear Power Plants. Recently this system has been upgraded to a more sophisticated one by using PC add-on hardware and developing Windows based software. The software implements more intuitive graphical user interface and also enhances the features making it comparable with commercially available systems. It implements data processing using full spectrum analysis as against channel ratio method adopted earlier, improving the accuracy of the results. Also it facilitates qualitative as well as quantitative analysis of the β-spectrum. It is possible to analyze a sample containing an unknown β-source. (author)

  19. LAWRENCE RADIATION LABORATORY COUNTING HANDBOOK

    Energy Technology Data Exchange (ETDEWEB)

    Group, Nuclear Instrumentation

    1966-10-01

    The Counting Handbook is a compilation of operational techniques and performance specifications on counting equipment in use at the Lawrence Radiation Laboratory, Berkeley. Counting notes have been written from the viewpoint of the user rather than that of the designer or maintenance man. The only maintenance instructions that have been included are those that can easily be performed by the experimenter to assure that the equipment is operating properly.

  20. Landscape correlates along mourning dove call-count routes in Mississippi

    Science.gov (United States)

    Elmore, R.D.; Vilella, F.J.; Gerard, P.D.

    2007-01-01

    Mourning dove (Zenaida macroura) call-count surveys in Mississippi, USA, suggest declining populations. We used available mourning dove call-count data to evaluate long-term mourning dove habitat relationships. Dove routes were located in the Mississippi Alluvial Valley, Deep Loess Province, Mid Coastal Plain, and Hilly Coastal Plain physiographic provinces of Mississippi. We also included routes in the Blackbelt Prairie region of Mississippi and Alabama, USA. We characterized landscape structure and composition within 1.64-km buffers around 10 selected mourning dove call-count routes during 3 time periods. Habitat classes included agriculture, forest, urban, regeneration stands, wetland, and woodlot. We used Akaike's Information Criterion to select the best candidate model. We selected a model containing percent agriculture and edge density that contained approximately 40% of the total variability in the data set. Percent agriculture was positively correlated with relative dove abundance. Interestingly, we found a negative relationship between edge density and dove abundance. Researchers should conduct future research on dove nesting patterns in Mississippi and threshold levels of edge necessary to maximize dove density. During the last 20 years, Mississippi lost more than 800,000 ha of cropland while forest cover represented largely by pine (Pinus taeda) plantations increased by more than 364,000 ha. Our results suggest observed localized declines in mourning dove abundance in Mississippi may be related to the documented conversion of agricultural lands to pine plantations.

  1. Relationship between somatic cell count and lactose content in milk of various species of mammals

    Directory of Open Access Journals (Sweden)

    Oto Hanuš

    2010-01-01

    Full Text Available Somatic cell count (SCC is an indicator of mammary gland health state. Lactose (L can be reduced with mastitis and SCC increase. Mammary gland health is an essential factor of milk quality. Monitoring of mammary gland health is important for prevention and treatment of milk secretion disorders. The goal of this work was to analyse the relationship between SCC and L in various biological species. 7 sets of individual and bulk milk samples (MSs were analysed (n = 479, 479, 345, 80, 90 and 102 for SCC and L content. 3 sets were with cow (C milk and 1 set with goat (G, 1 with sheep (S and 1 with human (H MSs. The relations in C milk were used as reference. SCC geometric means were markedly lower in C milk (62, 99 and 81 103 . ml−1 and H milk (103 103 . ml−1 as compared to small ruminants (G 3 509 and S 609 103 . ml−1. The mean L values were lower in small ruminants (G 4.36% and S 4.42% as compared to C milk (4.95%, 4.97% and in 1st lactation 5.10% and higher in H milk (5.77%. L contents in Czech Fleckvieh and Holstein correlated negatively to SCC (log SCC in all lactations (−0.36 P < 0.001 and −0.33 P < 0.001. L content in 1st lactation correlated with SCC markedly narrower than in cows for all lactations (−0.49 P < 0.001. The SCC×L relationship in G (White short–haired milk (−0.35 P < 0.01 was in good relation to C milk and in S (Tsigai milk (−0.51 P < 0.001 was markedly narrower as in C and G milk. Lower mean SCC in H milk as compared to G and S milk and comparable to C milk did not show significant negative relationship to L which was 0.08 (P > 0.05 for original SCC values. Surprisingly there was not found the SCC×L relationship in H milk which could be comparable to other mammal species milk. It could be caused by bacteriologically negative results in MSs with higher SCC (> 300 103 . ml−1. As well as at C milk also at G and S milk and in contrast to H milk it is possible to use the SCC×L relationship

  2. Using Count Data and Ordered Models in National Forest Recreation Demand Analysis

    Science.gov (United States)

    Simões, Paula; Barata, Eduardo; Cruz, Luis

    2013-11-01

    This research addresses the need to improve our knowledge on the demand for national forests for recreation and offers an in-depth data analysis supported by the complementary use of count data and ordered models. From a policy-making perspective, while count data models enable the estimation of monetary welfare measures, ordered models allow for the wider use of the database and provide a more flexible analysis of data. The main purpose of this article is to analyse the individual forest recreation demand and to derive a measure of its current use value. To allow a more complete analysis of the forest recreation demand structure the econometric approach supplements the use of count data models with ordered category models using data obtained by means of an on-site survey in the Bussaco National Forest (Portugal). Overall, both models reveal that travel cost and substitute prices are important explanatory variables, visits are a normal good and demographic variables seem to have no influence on demand. In particular, estimated price and income elasticities of demand are quite low. Accordingly, it is possible to argue that travel cost (price) in isolation may be expected to have a low impact on visitation levels.

  3. Hierarchical species distribution models

    Science.gov (United States)

    Hefley, Trevor J.; Hooten, Mevin B.

    2016-01-01

    Determining the distribution pattern of a species is important to increase scientific knowledge, inform management decisions, and conserve biodiversity. To infer spatial and temporal patterns, species distribution models have been developed for use with many sampling designs and types of data. Recently, it has been shown that count, presence-absence, and presence-only data can be conceptualized as arising from a point process distribution. Therefore, it is important to understand properties of the point process distribution. We examine how the hierarchical species distribution modeling framework has been used to incorporate a wide array of regression and theory-based components while accounting for the data collection process and making use of auxiliary information. The hierarchical modeling framework allows us to demonstrate how several commonly used species distribution models can be derived from the point process distribution, highlight areas of potential overlap between different models, and suggest areas where further research is needed.

  4. Smart fast blood counting of trace volumes of body fluids from various mammalian species using a compact custom-built microscope cytometer (Conference Presentation)

    Science.gov (United States)

    Smith, Zachary J.; Gao, Tingjuan; Lin, Tzu-Yin; Carrade-Holt, Danielle; Lane, Stephen M.; Matthews, Dennis L.; Dwyre, Denis M.; Wachsmann-Hogiu, Sebastian

    2016-03-01

    Cell counting in human body fluids such as blood, urine, and CSF is a critical step in the diagnostic process for many diseases. Current automated methods for cell counting are based on flow cytometry systems. However, these automated methods are bulky, costly, require significant user expertise, and are not well suited to counting cells in fluids other than blood. Therefore, their use is limited to large central laboratories that process enough volume of blood to recoup the significant capital investment these instruments require. We present in this talk a combination of a (1) low-cost microscope system, (2) simple sample preparation method, and (3) fully automated analysis designed for providing cell counts in blood and body fluids. We show results on both humans and companion and farm animals, showing that accurate red cell, white cell, and platelet counts, as well as hemoglobin concentration, can be accurately obtained in blood, as well as a 3-part white cell differential in human samples. We can also accurately count red and white cells in body fluids with a limit of detection ~3 orders of magnitude smaller than current automated instruments. This method uses less than 1 microliter of blood, and less than 5 microliters of body fluids to make its measurements, making it highly compatible with finger-stick style collections, as well as appropriate for small animals such as laboratory mice where larger volume blood collections are dangerous to the animal's health.

  5. The Kruskal Count

    OpenAIRE

    Lagarias, Jeffrey C.; Rains, Eric; Vanderbei, Robert J.

    2001-01-01

    The Kruskal Count is a card trick invented by Martin J. Kruskal in which a magician "guesses" a card selected by a subject according to a certain counting procedure. With high probability the magician can correctly "guess" the card. The success of the trick is based on a mathematical principle related to coupling methods for Markov chains. This paper analyzes in detail two simplified variants of the trick and estimates the probability of success. The model predictions are compared with simula...

  6. Ant species (Hymenoptera, Formicidae from the seasonally dry tropical forest of northeastern Brazil: a compilation from field surveys in Bahia and literature records

    Directory of Open Access Journals (Sweden)

    Mônica A. Ulysséa

    2013-06-01

    Full Text Available Ant species (Hymenoptera, Formicidae from the seasonally dry tropical forest of northeastern Brazil: a compilation from field surveys in Bahia and literature records. The Caatingas occur predominantly in northeastern Brazil and comparatively it is the biome that received less attention than any other ecosystem in Brazil, representing the region where invertebrate groups are less known. We present here the first list of ant species of the Caatingas, compiling information from the literature, from a study of samples preserved in alcohol in the Laboratory of Entomology (Universidade Estadual de Feira de Santana, and from a field survey conducted in Milagres, Bahia, submitting standardized 1-m² samples of the leaf-litter to Winkler extractors. Summing all information, 11 subfamilies, 61 genera and 173 species (plus one subspecies of ants are recognized in the biome. This species number does not consider morphospecies that could not be named due to the lack of reliable recent taxonomic information for some Neotropical ant genera. The list presented here for ant species of the Caatingas is therefore underestimated, but it is relevant because it allows the identification of areas to be sampled in order to improve our knowledge of the diversity of ants in this biome.

  7. SPERM COUNT DISTRIBUTIONS IN FERTILE MEN

    Science.gov (United States)

    Sperm concentration and count are often used as indicators of environmental impacts on male reproductive health. Existing clinical databases may be biased towards subfertile men with low sperm counts and less is known about expected sperm count distributions in cohorts of fertil...

  8. Phoswich Detector for Simultaneous Counting of Alpha- and Beta-ray in a Pipe during Decommissioning

    International Nuclear Information System (INIS)

    Seo, B.K.; Kim, G.H.; Woo, Z.H.; Jung, Y.H.; Oh, W.Z.; Lee, K.W.; Han, M.J.

    2006-01-01

    A great quantity of waste has been generated during the decommissioning of nuclear facilities. These wastes are contaminated with various types of alpha, beta, and gamma nuclides. The contamination level of the decommissioning wastes must be surveyed for free release, but it is very difficult to monitor the radioactive contamination level of the pipe inside using conventional counting methods because of the small diameter. In this study a Phoswich detector for simultaneous counting of alpha- and beta-rays in a pipe was developed. The Phoswich detector is convenient for monitoring of alpha and beta contamination using only a single detector, which was composed of thin cylindrical ZnS(Ag) and plastic scintillator. The scintillator for counting an alpha particle has been applied a cylindrical polymer composite sheet, having a double layer structure of an inorganic scintillator ZnS(Ag) layer adhered onto a polymer sub-layer. The sub-layer in an alpha particle counting sheet is made of polysulfone, working as a mechanical and optical support. The ZnS(Ag) layer is formed by coating a ternary mixture of ZnS(Ag), cyano resin as a binder and solvent onto the top of a sub-layer via the screen printing method. The other layer for counting a beta particle used a commercially available plastic scintillator. The plastic scintillator was simulated by using the Monte Carlo simulation method for detection of beta radiation emitted from internal surfaces of small diameter pipe. Simulation results predicted the optimum thickness and geometry of plastic scintillator at which energy absorption for beta radiation was maximized. Characteristics of the detector fabricated were also estimated. As a result, it was confirmed that detector capability was suitable for counting the beta ray. The overall counting results reveal that the developed Phoswich detector is efficient for simultaneous counting of alpha and beta ray in a pipe. (authors)

  9. Bayesian analysis of energy and count rate data for detection of low count rate radioactive sources.

    Science.gov (United States)

    Klumpp, John; Brandl, Alexander

    2015-03-01

    A particle counting and detection system is proposed that searches for elevated count rates in multiple energy regions simultaneously. The system analyzes time-interval data (e.g., time between counts), as this was shown to be a more sensitive technique for detecting low count rate sources compared to analyzing counts per unit interval (Luo et al. 2013). Two distinct versions of the detection system are developed. The first is intended for situations in which the sample is fixed and can be measured for an unlimited amount of time. The second version is intended to detect sources that are physically moving relative to the detector, such as a truck moving past a fixed roadside detector or a waste storage facility under an airplane. In both cases, the detection system is expected to be active indefinitely; i.e., it is an online detection system. Both versions of the multi-energy detection systems are compared to their respective gross count rate detection systems in terms of Type I and Type II error rates and sensitivity.

  10. Total bacterial count and somatic cell count in refrigerated raw milk stored in communal tanks

    Directory of Open Access Journals (Sweden)

    Edmar da Costa Alves

    2014-09-01

    Full Text Available The current industry demand for dairy products with extended shelf life has resulted in new challenges for milk quality maintenance. The processing of milk with high bacterial counts compromises the quality and performance of industrial products. The study aimed to evaluate the total bacteria counts (TBC and somatic cell count (SCC in 768 samples of refrigerated raw milk, from 32 communal tanks. Samples were collected in the first quarter of 2010, 2011, 2012 and 2013 and analyzed by the Laboratory of Milk Quality - LQL. Results showed that 62.5%, 37.5%, 15.6% and 27.1% of the means for TBC in 2010, 2011, 2012 and 2013, respectively, were above the values established by legislation. However, we observed a significant reduction in the levels of total bacterial count (TBC in the studied periods. For somatic cell count, 100% of the means indicated values below 600.000 cells/mL, complying with the actual Brazilian legislation. The values found for the somatic cell count suggests the adoption of effective measures for the sanitary control of the herd. However, the results must be considered with caution as it highlights the need for quality improvements of the raw material until it achieves reliable results effectively.

  11. A “Forward Genomics” Approach Links Genotype to Phenotype using Independent Phenotypic Losses among Related Species

    Directory of Open Access Journals (Sweden)

    Michael Hiller

    2012-10-01

    Full Text Available Genotype-phenotype mapping is hampered by countless genomic changes between species. We introduce a computational “forward genomics” strategy that—given only an independently lost phenotype and whole genomes—matches genomic and phenotypic loss patterns to associate specific genomic regions with this phenotype. We conducted genome-wide screens for two metabolic phenotypes. First, our approach correctly matches the inactivated Gulo gene exactly with the species that lost the ability to synthesize vitamin C. Second, we attribute naturally low biliary phospholipid levels in guinea pigs and horses to the inactivated phospholipid transporter Abcb4. Human ABCB4 mutations also result in low phospholipid levels but lead to severe liver disease, suggesting compensatory mechanisms in guinea pig and horse. Our simulation studies, counts of independent changes in existing phenotype surveys, and the forthcoming availability of many new genomes all suggest that forward genomics can be applied to many phenotypes, including those relevant for human evolution and disease.

  12. Rainflow counting revisited

    Energy Technology Data Exchange (ETDEWEB)

    Soeker, H [Deutsches Windenergie-Institut (Germany)

    1996-09-01

    As state of the art method the rainflow counting technique is presently applied everywhere in fatigue analysis. However, the author feels that the potential of the technique is not fully recognized in wind energy industries as it is used, most of the times, as a mere data reduction technique disregarding some of the inherent information of the rainflow counting results. The ideas described in the following aim at exploitation of this information and making it available for use in the design and verification process. (au)

  13. Radon counting statistics - a Monte Carlo investigation

    International Nuclear Information System (INIS)

    Scott, A.G.

    1996-01-01

    Radioactive decay is a Poisson process, and so the Coefficient of Variation (COV) of open-quotes nclose quotes counts of a single nuclide is usually estimated as 1/√n. This is only true if the count duration is much shorter than the half-life of the nuclide. At longer count durations, the COV is smaller than the Poisson estimate. Most radon measurement methods count the alpha decays of 222 Rn, plus the progeny 218 Po and 214 Po, and estimate the 222 Rn activity from the sum of the counts. At long count durations, the chain decay of these nuclides means that every 222 Rn decay must be followed by two other alpha decays. The total number of decays is open-quotes 3Nclose quotes, where N is the number of radon decays, and the true COV of the radon concentration estimate is 1/√(N), √3 larger than the Poisson total count estimate of 1/√3N. Most count periods are comparable to the half lives of the progeny, so the relationship between COV and count time is complex. A Monte-Carlo estimate of the ratio of true COV to Poisson estimate was carried out for a range of count periods from 1 min to 16 h and three common radon measurement methods: liquid scintillation, scintillation cell, and electrostatic precipitation of progeny. The Poisson approximation underestimates COV by less than 20% for count durations of less than 60 min

  14. Hanford whole body counting manual

    International Nuclear Information System (INIS)

    Palmer, H.E.; Rieksts, G.A.; Lynch, T.P.

    1990-06-01

    This document describes the Hanford Whole Body Counting Program as it is administered by Pacific Northwest Laboratory (PNL) in support of the US Department of Energy--Richland Operations Office (DOE-RL) and its Hanford contractors. Program services include providing in vivo measurements of internally deposited radioactivity in Hanford employees (or visitors). Specific chapters of this manual deal with the following subjects: program operational charter, authority, administration, and practices, including interpreting applicable DOE Orders, regulations, and guidance into criteria for in vivo measurement frequency, etc., for the plant-wide whole body counting services; state-of-the-art facilities and equipment used to provide the best in vivo measurement results possible for the approximately 11,000 measurements made annually; procedures for performing the various in vivo measurements at the Whole Body Counter (WBC) and related facilities including whole body counts; operation and maintenance of counting equipment, quality assurance provisions of the program, WBC data processing functions, statistical aspects of in vivo measurements, and whole body counting records and associated guidance documents. 16 refs., 48 figs., 22 tabs

  15. Platelet Count and Plateletcrit

    African Journals Online (AJOL)

    strated that neonates with late onset sepsis (bacteremia after 3 days of age) had a dramatic increase in MPV and. PDW18. We hypothesize that as the MPV and PDW increase and platelet count and PCT decrease in sick children, intui- tively, the ratio of MPV to PCT; MPV to Platelet count,. PDW to PCT, PDW to platelet ...

  16. Signatures of reproductive events on blood counts and biomarkers of inflammation: Implications for chronic disease risk.

    Directory of Open Access Journals (Sweden)

    Daniel W Cramer

    Full Text Available Whether inflammation mediates how reproductive events affect chronic-disease risk is unclear. We studied inflammatory biomarkers in the context of reproductive events using National Health and Nutrition Examination Survey (NHANES data. From 15,986 eligible women from the 1999-2011 data cycles, we accessed information on reproductive events, blood counts, C-reactive protein (CRP, and total homocysteine (tHCY. We calculated blood-count ratios including: platelet-lymphocyte (PLR, lymphocyte-monocyte (LMR, platelet-monocyte (PMR, and neutrophil-monocyte (NMR. Using sampling weights per NHANES guidelines, means for counts, ratios, or biomarkers by reproductive events were compared using linear regression. We performed trend tests and calculated p-values with partial sum of squares F-tests. Higher PLR and lower LMR were associated with nulliparity. In postmenopausal women, lower PMR was associated with early age at first birth and higher NMR with later age at and shorter interval since last birth. Lower PNR and higher neutrophils and tHCY were associated with early natural menopause. In all women, the neutrophil count correlated positively with CRP; but, in premenopausal women, correlated inversely with tHCY. Reproductive events leave residual signatures on blood counts and inflammatory biomarkers that could underlie their links to chronic disease risk.

  17. Aerial radiological survey of the area surrounding the Feed Materials Production Center, Fernald, Ohio. Dates of surveys, August 1976/May-June 1977

    International Nuclear Information System (INIS)

    Feimster, E.L.

    1979-06-01

    Two aerial radiological surveys to measure terrestrial gamma radiation were made over an area centered on the United States Department of Energy's Feed Materials Production Center in the city of Fernald, Ohio. The Center is operated by the National Lead Company of Ohio. Gamma ray data were collected from east-west flight lines at 90 m intervals over an area 25 km 2 centered on the plant site. The small Ohio towns of Shandon, Ross, and New Baltimore were surveyed from north-south flight lines at 300 m intervals. Processed data indicated that on-site radioactivity was due primarily to radionuclides currently being handled or processed at the Center. Off-site data showed the radioactivity to be due to naturally occurring radionuclides northeast and south of the site. If the northwest corner of the survey area an unusually high count rate region of airborne radon daughter activity was encountered. This was equivalent to approximately four times the normal background. However, the follow-up survey of 1977 showed this area to be within the background count rate level

  18. An Adaptive Smoother for Counting Measurements

    International Nuclear Information System (INIS)

    Kondrasovs Vladimir; Coulon Romain; Normand Stephane

    2013-06-01

    Counting measurements associated with nuclear instruments are tricky to carry out due to the stochastic process of the radioactivity. Indeed events counting have to be processed and filtered in order to display a stable count rate value and to allow variations monitoring in the measured activity. Smoothers (as the moving average) are adjusted by a time constant defined as a compromise between stability and response time. A new approach has been developed and consists in improving the response time while maintaining count rate stability. It uses the combination of a smoother together with a detection filter. A memory of counting data is processed to calculate several count rate estimates using several integration times. These estimates are then sorted into the memory from short to long integration times. A measurement position, in terms of integration time, is then chosen into this memory after a detection test. An inhomogeneity into the Poisson counting process is detected by comparison between current position estimate and the other estimates contained into the memory in respect with the associated statistical variance calculated with homogeneous assumption. The measurement position (historical time) and the ability to forget an obsolete data or to keep in memory a useful data are managed using the detection test result. The proposed smoother is then an adaptive and a learning algorithm allowing an optimization of the response time while maintaining measurement counting stability and converging efficiently to the best counting estimate after an effective change in activity. This algorithm has also the specificity to be low recursive and thus easily embedded into DSP electronics based on FPGA or micro-controllers meeting 'real life' time requirements. (authors)

  19. Western states uranium resource survey

    International Nuclear Information System (INIS)

    Tinney, J.F.

    1977-01-01

    ERDA's National Uranium Resource Evaluation (NURE) program was established to provide a comprehensive description of uranium resources in the United States. To carry out this task, ERDA has contracted with various facilities, including universities, private companies, and state agencies, to undertake projects such as airborne radiometric surveys, geological and geochemical studies, and the development of advanced geophysical technology. LLL is one of four ERDA laboratories systematically studying uranium distribution in surface water, groundwater, and lake and stream sediments. We are specifically responsible for surveying seven western states. This past year we have designed and installed facilities for delayed-neutron counting and neutron-activation analysis, completed seven orientation surveys, and analyzed several thousand field samples. Full-scale reconnaissance surveys began last fall

  20. The hematology of captive Bobtail lizards (Tiliqua rugosa): blood counts, light microscopy, cytochemistry, and ultrastructure.

    Science.gov (United States)

    Moller, Cheryl A; Gaál, Tibor; Mills, Jennifer N

    2016-12-01

    Bobtail lizards (Tiliqua rugosa) are native to Australia. The only previous study on the hematology of this species documented just 6 animals. The aims of this study were to characterize the light microscopy, ultrastructure and cytochemistry of blood cells, and evaluate CBCs of captive Bobtail lizards. Over 2 consecutive summers, heparinized venous blood was collected from the ventral coccygeal vein of 46 clinically healthy, captive indoor- or outdoor-housed adult Bobtails. Complete blood cell counts and smear evaluations were performed, and cytochemical stains and transmission electron microscopy were used to further characterize blood cells. The eosinophils of this species were uniformly vacuolated: a unique feature not previously reported in reptiles. Heterophils were the predominant leukocyte, with fewer lymphocytes, azurophilic and nonazurophilic monocytes, occasional eosinophils, and basophils. Thrombocytes were frequently clumped. Slight polychromasia (0-15% of erythrocytes) was typically present. Hemogregarine parasites were seen on some smears. The range of CBC results was often wide. The PCV ranged from 11% to 38%. Total plasma proteins by refractometry were between 3.5 and 7.8 g/dL. Hemoglobin ranged between 2.6 and 12.6 g/dL by the modified hemoglobin-hydroxylamine method. Manual RBC count was 0.35-1.27 × 10 6 /μL, and WBC count was 2.86-22.66 × 10 3 /μL. Bobtail lizards housed outdoors had lower PCVs than indoor-housed animals. Bobtails with hemogregarine infections had lower PCVs than noninfected lizards. Ranges for CBC data were often very wide, influenced by preanalytic and analytic factors. Hemogregarine infection is associated with a decreased PCV, suggesting that some hemogregarine species are pathogenic in this population. © 2016 American Society for Veterinary Clinical Pathology.

  1. Counting probe

    International Nuclear Information System (INIS)

    Matsumoto, Haruya; Kaya, Nobuyuki; Yuasa, Kazuhiro; Hayashi, Tomoaki

    1976-01-01

    Electron counting method has been devised and experimented for the purpose of measuring electron temperature and density, the most fundamental quantities to represent plasma conditions. Electron counting is a method to count the electrons in plasma directly by equipping a probe with the secondary electron multiplier. It has three advantages of adjustable sensitivity, high sensitivity of the secondary electron multiplier, and directional property. Sensitivity adjustment is performed by changing the size of collecting hole (pin hole) on the incident front of the multiplier. The probe is usable as a direct reading thermometer of electron temperature because it requires to collect very small amount of electrons, thus it doesn't disturb the surrounding plasma, and the narrow sweep width of the probe voltage is enough. Therefore it can measure anisotropy more sensitively than a Langmuir probe, and it can be used for very low density plasma. Though many problems remain on anisotropy, computer simulation has been carried out. Also it is planned to provide a Helmholtz coil in the vacuum chamber to eliminate the effect of earth magnetic field. In practical experiments, the measurement with a Langmuir probe and an emission probe mounted to the movable structure, the comparison with the results obtained in reverse magnetic field by using a Helmholtz coil, and the measurement of ionic sound wave are scheduled. (Wakatsuki, Y.)

  2. A mind you can count on: validating breath counting as a behavioral measure of mindfulness

    Directory of Open Access Journals (Sweden)

    Daniel B Levinson

    2014-10-01

    Full Text Available Mindfulness practice of present moment awareness promises many benefits, but has eluded rigorous behavioral measurement. To date, research has relied on self-reported mindfulness or heterogeneous mindfulness trainings to infer skillful mindfulness practice and its effects. In four independent studies with over 400 total participants, we present the first construct validation of a behavioral measure of mindfulness, breath counting. We found it was reliable, correlated with self-reported mindfulness, differentiated long-term meditators from age-matched controls, and was distinct from sustained attention and working memory measures. In addition, we employed breath counting to test the nomological network of mindfulness. As theorized, we found skill in breath counting associated with more meta-awareness, less mind wandering, better mood, and greater nonattachment (i.e. less attentional capture by distractors formerly paired with reward. We also found in a randomized online training study that 4 weeks of breath counting training improved mindfulness and decreased mind wandering relative to working memory training and no training controls. Together, these findings provide the first evidence for breath counting as a behavioral measure of mindfulness.

  3. Chromosome Numbers and Genome Size Variation in Indian Species of Curcuma (Zingiberaceae)

    Science.gov (United States)

    Leong-Škorničková, Jana; Šída, Otakar; Jarolímová, Vlasta; Sabu, Mamyil; Fér, Tomáš; Trávníček, Pavel; Suda, Jan

    2007-01-01

    Background and Aims Genome size and chromosome numbers are important cytological characters that significantly influence various organismal traits. However, geographical representation of these data is seriously unbalanced, with tropical and subtropical regions being largely neglected. In the present study, an investigation was made of chromosomal and genome size variation in the majority of Curcuma species from the Indian subcontinent, and an assessment was made of the value of these data for taxonomic purposes. Methods Genome size of 161 homogeneously cultivated plant samples classified into 51 taxonomic entities was determined by propidium iodide flow cytometry. Chromosome numbers were counted in actively growing root tips using conventional rapid squash techniques. Key Results Six different chromosome counts (2n = 22, 42, 63, >70, 77 and 105) were found, the last two representing new generic records. The 2C-values varied from 1·66 pg in C. vamana to 4·76 pg in C. oligantha, representing a 2·87-fold range. Three groups of taxa with significantly different homoploid genome sizes (Cx-values) and distinct geographical distribution were identified. Five species exhibited intraspecific variation in nuclear DNA content, reaching up to 15·1 % in cultivated C. longa. Chromosome counts and genome sizes of three Curcuma-like species (Hitchenia caulina, Kaempferia scaposa and Paracautleya bhatii) corresponded well with typical hexaploid (2n = 6x = 42) Curcuma spp. Conclusions The basic chromosome number in the majority of Indian taxa (belonging to subgenus Curcuma) is x = 7; published counts correspond to 6x, 9x, 11x, 12x and 15x ploidy levels. Only a few species-specific C-values were found, but karyological and/or flow cytometric data may support taxonomic decisions in some species alliances with morphological similarities. Close evolutionary relationships among some cytotypes are suggested based on the similarity in homoploid genome sizes and geographical grouping

  4. Estimating species occurrence, abundance, and detection probability using zero-inflated distributions.

    Science.gov (United States)

    Wenger, Seth J; Freeman, Mary C

    2008-10-01

    Researchers have developed methods to account for imperfect detection of species with either occupancy (presence absence) or count data using replicated sampling. We show how these approaches can be combined to simultaneously estimate occurrence, abundance, and detection probability by specifying a zero-inflated distribution for abundance. This approach may be particularly appropriate when patterns of occurrence and abundance arise from distinct processes operating at differing spatial or temporal scales. We apply the model to two data sets: (1) previously published data for a species of duck, Anas platyrhynchos, and (2) data for a stream fish species, Etheostoma scotti. We show that in these cases, an incomplete-detection zero-inflated modeling approach yields a superior fit to the data than other models. We propose that zero-inflated abundance models accounting for incomplete detection be considered when replicate count data are available.

  5. Principles of correlation counting

    International Nuclear Information System (INIS)

    Mueller, J.W.

    1975-01-01

    A review is given of the various applications which have been made of correlation techniques in the field of nuclear physics, in particular for absolute counting. Whereas in most cases the usual coincidence method will be preferable for its simplicity, correlation counting may be the only possible approach in such cases where the two radiations of the cascade cannot be well separated or when there is a longliving intermediate state. The measurement of half-lives and of count rates of spurious pulses is also briefly discussed. The various experimental situations lead to different ways the correlation method is best applied (covariance technique with one or with two detectors, application of correlation functions, etc.). Formulae are given for some simple model cases, neglecting dead-time corrections

  6. Generalist Bee Species on Brazilian Bee-Plant Interaction Networks

    Directory of Open Access Journals (Sweden)

    Astrid de Matos Peixoto Kleinert

    2012-01-01

    Full Text Available Determining bee and plant interactions has an important role on understanding general biology of bee species as well as the potential pollinating relationship between them. Bee surveys have been conducted in Brazil since the end of the 1960s. Most of them applied standardized methods and had identified the plant species where the bees were collected. To analyze the most generalist bees on Brazilian surveys, we built a matrix of bee-plant interactions. We estimated the most generalist bees determining the three bee species of each surveyed locality that presented the highest number of interactions. We found 47 localities and 39 species of bees. Most of them belong to Apidae (31 species and Halictidae (6 families and to Meliponini (14 and Xylocopini (6 tribes. However, most of the surveys presented Apis mellifera and/or Trigona spinipes as the most generalist species. Apis mellifera is an exotic bee species and Trigona spinipes, a native species, is also widespread and presents broad diet breath and high number of individuals per colony.

  7. Increased microerythrocyte count in homozygous alpha(+-thalassaemia contributes to protection against severe malarial anaemia.

    Directory of Open Access Journals (Sweden)

    Freya J I Fowkes

    2008-03-01

    Full Text Available The heritable haemoglobinopathy alpha(+-thalassaemia is caused by the reduced synthesis of alpha-globin chains that form part of normal adult haemoglobin (Hb. Individuals homozygous for alpha(+-thalassaemia have microcytosis and an increased erythrocyte count. Alpha(+-thalassaemia homozygosity confers considerable protection against severe malaria, including severe malarial anaemia (SMA (Hb concentration 1.1 x 10(12/l as a result of the reduced mean cell Hb in homozygous alpha(+-thalassaemia. In addition, children homozygous for alpha(+-thalassaemia require a 10% greater reduction in erythrocyte count than children of normal genotype (p = 0.02 for Hb concentration to fall to 50 g/l, the cutoff for SMA. We estimated that the haematological profile in children homozygous for alpha(+-thalassaemia reduces the risk of SMA during acute malaria compared to children of normal genotype (relative risk 0.52; 95% confidence interval [CI] 0.24-1.12, p = 0.09.The increased erythrocyte count and microcytosis in children homozygous for alpha(+-thalassaemia may contribute substantially to their protection against SMA. A lower concentration of Hb per erythrocyte and a larger population of erythrocytes may be a biologically advantageous strategy against the significant reduction in erythrocyte count that occurs during acute infection with the malaria parasite Plasmodium falciparum. This haematological profile may reduce the risk of anaemia by other Plasmodium species, as well as other causes of anaemia. Other host polymorphisms that induce an increased erythrocyte count and microcytosis may confer a similar advantage.

  8. Delta count-rate monitoring system

    International Nuclear Information System (INIS)

    Van Etten, D.; Olsen, W.A.

    1985-01-01

    A need for a more effective way to rapidly search for gamma-ray contamination over large areas led to the design and construction of a very sensitive gamma detection system. The delta count-rate monitoring system was installed in a four-wheel-drive van instrumented for environmental surveillance and accident response. The system consists of four main sections: (1) two scintillation detectors, (2) high-voltage power supply amplifier and single-channel analyzer, (3) delta count-rate monitor, and (4) count-rate meter and recorder. The van's 6.5-kW generator powers the standard nuclear instrument modular design system. The two detectors are mounted in the rear corners of the van and can be run singly or jointly. A solid-state bar-graph count-rate meter mounted on the dashboard can be read easily by both the driver and passenger. A solid-state strip chart recorder shows trends and provides a permanent record of the data. An audible alarm is sounded at the delta monitor and at the dashboard count-rate meter if a detected radiation level exceeds the set background level by a predetermined amount

  9. The development of neutron activation, sample transportation and γ-ray counting routine system for numbers of geological samples

    International Nuclear Information System (INIS)

    Shibata Shin-nosuke; Tanaka, Tsuyoshi; Minami, Masayo

    2001-01-01

    A new gamma-ray counting and data processing system for non-destructive neutron activation analysis has been set up in Radioisotope Center in Nagoya University. The system carry out gamma-ray counting, sample change and data processing automatically, and is able to keep us away from parts of complicated operations in INAA. In this study, we have arranged simple analytical procedure that makes practical works easier than previous. The concrete flow is described from the reparation of powder rock samples to gamma-ray counting and data processing by the new INAA system. Then it is run over that the analyses used two Geological Survey of Japan rock reference samples JB-1a and JG-1a in order to evaluate how the new analytical procedure give any speediness and accuracy for analyses of geological materials. Two United States Geological Survey reference samples BCR-1 and G-2 used as the standard respectively. Twenty two elements for JB-1a and 25 elements for JG-1a were analyzed, the uncertainty are <5% for Na, Sc, Fe, Co, La, Ce, Sm, Eu, Yb, Lu, Hf, Ta and Th, and of <10% for Cr, Zn, Cs, Ba, Nd, Tb and U. This system will enable us to analyze more than 1500 geologic samples per year. (author)

  10. DC KIDS COUNT e-Databook Indicators

    Science.gov (United States)

    DC Action for Children, 2012

    2012-01-01

    This report presents indicators that are included in DC Action for Children's 2012 KIDS COUNT e-databook, their definitions and sources and the rationale for their selection. The indicators for DC KIDS COUNT represent a mix of traditional KIDS COUNT indicators of child well-being, such as the number of children living in poverty, and indicators of…

  11. In vivo counting of uranium

    International Nuclear Information System (INIS)

    Palmer, H.E.

    1985-03-01

    A state-of-the-art radiation detector system consisting of six individually mounted intrinsic germanium planar detectors, each 20 cm 2 by 13 mm thick, mounted together such that the angle of the whole system can be changed to match the slope of the chest of the person being counted, is described. The sensitivity of the system for counting uranium and plutonium in vivo and the precedures used in calibrating the system are also described. Some results of counts done on uranium mill workers are presented. 15 figs., 2 tabs

  12. Genome survey of pistachio (Pistacia vera L.) by next generation sequencing: Development of novel SSR markers and genetic diversity in Pistacia species.

    Science.gov (United States)

    Ziya Motalebipour, Elmira; Kafkas, Salih; Khodaeiaminjan, Mortaza; Çoban, Nergiz; Gözel, Hatice

    2016-12-07

    Pistachio (Pistacia vera L.) is one of the most important nut crops in the world. There are about 11 wild species in the genus Pistacia, and they have importance as rootstock seed sources for cultivated P. vera and forest trees. Published information on the pistachio genome is limited. Therefore, a genome survey is necessary to obtain knowledge on the genome structure of pistachio by next generation sequencing. Simple sequence repeat (SSR) markers are useful tools for germplasm characterization, genetic diversity analysis, and genetic linkage mapping, and may help to elucidate genetic relationships among pistachio cultivars and species. To explore the genome structure of pistachio, a genome survey was performed using the Illumina platform at approximately 40× coverage depth in the P. vera cv. Siirt. The K-mer analysis indicated that pistachio has a genome that is about 600 Mb in size and is highly heterozygous. The assembly of 26.77 Gb Illumina data produced 27,069 scaffolds at N50 = 3.4 kb with a total of 513.5 Mb. A total of 59,280 SSR motifs were detected with a frequency of 8.67 kb. A total of 206 SSRs were used to characterize 24 P. vera cultivars and 20 wild Pistacia genotypes (four genotypes from each five wild Pistacia species) belonging to P. atlantica, P. integerrima, P. chinenesis, P. terebinthus, and P. lentiscus genotypes. Overall 135 SSR loci amplified in all 44 cultivars and genotypes, 41 were polymorphic in six Pistacia species. The novel SSR loci developed from cultivated pistachio were highly transferable to wild Pistacia species. The results from a genome survey of pistachio suggest that the genome size of pistachio is about 600 Mb with a high heterozygosity rate. This information will help to design whole genome sequencing strategies for pistachio. The newly developed novel polymorphic SSRs in this study may help germplasm characterization, genetic diversity, and genetic linkage mapping studies in the genus Pistacia.

  13. How to improve the standardization and the diagnostic performance of the fecal egg count reduction test?

    DEFF Research Database (Denmark)

    Levecke, Bruno; Kaplan, Ray M.; Thamsborg, Stig M.

    2018-01-01

    Although various studies have provided novel insights into how to best design, analyze and interpret a fecal egg count reduction test (FECRT), it is still not straightforward to provide guidance that allows improving both the standardization and the analytical performance of the FECRT across...... a variety of both animal and nematode species. For example, it has been suggested to recommend a minimum number of eggs to be counted under the microscope (not eggs per gram of feces), but we lack the evidence to recommend any number of eggs that would allow a reliable assessment of drug efficacy. Other...... the UI methodology that yields the most reliable assessment of drug efficacy (coverage of TDE) and detection of reduced drug efficacy, and (iii) to determine the required sample size and number of eggs counted under the microscope that optimizes the detection of reduced efficacy. Our results confirm...

  14. Analysis of aerial survey data on Florida manatee using Markov chain Monte Carlo.

    Science.gov (United States)

    Craig, B A; Newton, M A; Garrott, R A; Reynolds, J E; Wilcox, J R

    1997-06-01

    We assess population trends of the Atlantic coast population of Florida manatee, Trichechus manatus latirostris, by reanalyzing aerial survey data collected between 1982 and 1992. To do so, we develop an explicit biological model that accounts for the method by which the manatees are counted, the mammals' movement between surveys, and the behavior of the population total over time. Bayesian inference, enabled by Markov chain Monte Carlo, is used to combine the survey data with the biological model. We compute marginal posterior distributions for all model parameters and predictive distributions for future counts. Several conclusions, such as a decreasing population growth rate and low sighting probabilities, are consistent across different prior specifications.

  15. Alpha scintillation radon counting

    International Nuclear Information System (INIS)

    Lucas, H.F. Jr.

    1977-01-01

    Radon counting chambers which utilize the alpha-scintillation properties of silver activated zinc sulfide are simple to construct, have a high efficiency, and, with proper design, may be relatively insensitive to variations in the pressure or purity of the counter filling. Chambers which were constructed from glass, metal, or plastic in a wide variety of shapes and sizes were evaluated for the accuracy and the precision of the radon counting. The principles affecting the alpha-scintillation radon counting chamber design and an analytic system suitable for a large scale study of the 222 Rn and 226 Ra content of either air or other environmental samples are described. Particular note is taken of those factors which affect the accuracy and the precision of the method for monitoring radioactivity around uranium mines

  16. Equivalence of truncated count mixture distributions and mixtures of truncated count distributions.

    Science.gov (United States)

    Böhning, Dankmar; Kuhnert, Ronny

    2006-12-01

    This article is about modeling count data with zero truncation. A parametric count density family is considered. The truncated mixture of densities from this family is different from the mixture of truncated densities from the same family. Whereas the former model is more natural to formulate and to interpret, the latter model is theoretically easier to treat. It is shown that for any mixing distribution leading to a truncated mixture, a (usually different) mixing distribution can be found so that the associated mixture of truncated densities equals the truncated mixture, and vice versa. This implies that the likelihood surfaces for both situations agree, and in this sense both models are equivalent. Zero-truncated count data models are used frequently in the capture-recapture setting to estimate population size, and it can be shown that the two Horvitz-Thompson estimators, associated with the two models, agree. In particular, it is possible to achieve strong results for mixtures of truncated Poisson densities, including reliable, global construction of the unique NPMLE (nonparametric maximum likelihood estimator) of the mixing distribution, implying a unique estimator for the population size. The benefit of these results lies in the fact that it is valid to work with the mixture of truncated count densities, which is less appealing for the practitioner but theoretically easier. Mixtures of truncated count densities form a convex linear model, for which a developed theory exists, including global maximum likelihood theory as well as algorithmic approaches. Once the problem has been solved in this class, it might readily be transformed back to the original problem by means of an explicitly given mapping. Applications of these ideas are given, particularly in the case of the truncated Poisson family.

  17. Rapid assessment survey for exotic benthic species in the São Sebastião Channel, Brazil

    Directory of Open Access Journals (Sweden)

    Antonio C Marques

    2013-04-01

    Full Text Available The study of biological invasions can be roughly divided into three parts: detection, monitoring, mitigation. Here, our objectives were to describe the marine fauna of the area of the port of São Sebastião (on the northern coast of the state of São Paulo, in the São Sebastião Channel, SSC to detect introduced species. Descriptions of the faunal community of the SSC with respect to native and allochthonous (invasive or potentially so diversity are lacking for all invertebrate groups. Sampling was carried out by specialists within each taxonomic group, in December 2009, following the protocol of the Rapid Assessment Survey (RAS in three areas with artificial structures as substrates. A total of 142 species were identified (61 native, 15 introduced, 62 cryptogenic, 4 not classified, of which 17 were Polychaeta (12, 1, 1, 3, 24 Ascidiacea (3, 6, 15, 0, 36 Bryozoa (17, 0, 18, 1, 27 Cmdana (2, 1, 24, 0, 20 Crustacea (11, 4, 5, 0, 2 Entoprocta (native, 16 Mollusca (13, 3, 0, 0. Twelve species are new occurrences for the SSC. Among the introduced taxa, two are new for coastal Brazil. Estimates of introduced taxa are conservative as the results of molecular studies suggest that some species previously considered cryptogenic are indeed introduced. We emphasize that the large number of cryptogenic species illustrates the need for a long-term monitoring program, especially in areas most susceptible to bioinvasion. We conclude that rapid assessment studies, even in relatively well-known regions, can be very useful for the detection of introduced species and we recommend that they be carried out on a larger scale in all ports with heavy ship traffic.

  18. Blood Count Tests: MedlinePlus Health Topic

    Science.gov (United States)

    ... Spanish WBC count (Medical Encyclopedia) Also in Spanish Topic Image MedlinePlus Email Updates Get Blood Count Tests ... WBC count Show More Show Less Related Health Topics Bleeding Disorders Blood Laboratory Tests National Institutes of ...

  19. Evaluation of lactate, white blood cell count, neutrophil count, procalcitonin and immature granulocyte count as biomarkers for sepsis in emergency department patients.

    Science.gov (United States)

    Karon, Brad S; Tolan, Nicole V; Wockenfus, Amy M; Block, Darci R; Baumann, Nikola A; Bryant, Sandra C; Clements, Casey M

    2017-11-01

    Lactate, white blood cell (WBC) and neutrophil count, procalcitonin and immature granulocyte (IG) count were compared for the prediction of sepsis, and severe sepsis or septic shock, in patients presenting to the emergency department (ED). We prospectively enrolled 501 ED patients with a sepsis panel ordered for suspicion of sepsis. WBC, neutrophil, and IG counts were measured on a Sysmex XT-2000i analyzer. Lactate was measured by i-STAT, and procalcitonin by Brahms Kryptor. We classified patients as having sepsis using a simplification of the 1992 consensus conference sepsis definitions. Patients with sepsis were further classified as having severe sepsis or septic shock using established criteria. Univariate receiver operating characteristic (ROC) analysis was performed to determine odds ratio (OR), area under the ROC curve (AUC), and sensitivity/specificity at optimal cut-off for prediction of sepsis (vs. no sepsis), and prediction of severe sepsis or septic shock (vs. no sepsis). There were 267 patients without sepsis; and 234 with sepsis, including 35 patients with severe sepsis or septic shock. Lactate had the highest OR (1.44, 95th% CI 1.20-1.73) for the prediction of sepsis; while WBC, neutrophil count and percent (neutrophil/WBC) had OR>1.00 (psepsis or septic shock, with an odds ratio (95th% CI) of 2.70 (2.02-3.61) and AUC 0.89 (0.82-0.96). Traditional biomarkers (lactate, WBC, neutrophil count, procalcitonin, IG) have limited utility in the prediction of sepsis. Copyright © 2017 The Canadian Society of Clinical Chemists. Published by Elsevier Inc. All rights reserved.

  20. Serum Copper Level Significantly Influences Platelet Count, Lymphocyte Count and Mean Cell Hemoglobin in Sickle Cell Anemia

    Directory of Open Access Journals (Sweden)

    Okocha Chide

    2015-12-01

    Full Text Available Background Changes in serum micro nutrients levels affect a number of critically important metabolic processes; these could potentially influence blood counts and ultimately disease presentation in patients with sickle cell anemia (SCA. Objectives To evaluate the influence of serum micro-nutrients levels; zinc, copper, selenium and magnesium on blood counts in steady state SCA patients. Methods A cross sectional study that involved 28 steady state adult SCA subjects. Seven milliliters (mls of blood was collected; 3 mls was for hemoglobin electrophoresis and full blood count determination while 4 mls was for measurement of serum micro nutrients levels, by the atomic absorption spectrophotometry. Correlation between serum micro-nutrient levels and blood counts was done by the Pearson’s linear regression. Ethical approval was obtained from the institutional review board and each participant gave informed consent. All data was analyzed by SPSS software version 20. Results There was a significant correlation between serum copper levels and mean cell hemoglobin (MCH, platelet and lymphocyte counts (r = 0.418; P = 0.02, r = -0.376; P = 0.04 and r = -0.383; P = 0.04, respectively. There were no significant correlations between serum levels of other micro nutrients (selenium, zinc and magnesium and blood counts. Conclusions Copper influences blood count in SCA patients probably by inducing red cell haemolysis, oxidant tissue damage and stimulating the immune system.

  1. Correction for decay during counting in gamma spectrometry

    International Nuclear Information System (INIS)

    Nir-El, Y.

    2013-01-01

    A basic result in gamma spectrometry is the count rate of a relevant peak. Correction for decay during counting and expressing the count rate at the beginning of the measurement can be done by a multiplicative factor that is derived from integrating the count rate over time. The counting time substituted in this factor must be the live time, whereas the use of the real-time is an error that underestimates the count rate by about the dead-time (DT) (in percentage). This error of underestimation of the count rate is corroborated in the measurement of a nuclide with a high DT. The present methodology is not applicable in systems that include a zero DT correction function. (authors)

  2. Interpretation of galaxy counts

    International Nuclear Information System (INIS)

    Tinsely, B.M.

    1980-01-01

    New models are presented for the interpretation of recent counts of galaxies to 24th magnitude, and predictions are shown to 28th magnitude for future comparison with data from the Space Telescope. The results supersede earlier, more schematic models by the author. Tyson and Jarvis found in their counts a ''local'' density enhancement at 17th magnitude, on comparison with the earlier models; the excess is no longer significant when a more realistic mixture of galaxy colors is used. Bruzual and Kron's conclusion that Kron's counts show evidence for evolution at faint magnitudes is confirmed, and it is predicted that some 23d magnitude galaxies have redshifts greater than unity. These may include spheroidal systems, elliptical galaxies, and the bulges of early-type spirals and S0's, seen during their primeval rapid star formation

  3. Cestodes of the family Dilepididae (Cestoda:Cyclophyllidea) from fish-eating birds in Mexico: a survey of species.

    Science.gov (United States)

    Scholz, Tomás; Kuchta, Roman; Salgado-Madonado, Guillermo

    2002-07-01

    A survey of adults of dilepidid tapeworms (Cyclophyllidea) from piscivorous birds from Mexico is presented on the basis of the taxonomic evaluation of freshly collected and voucher specimens. The following species are reported (first records from Mexico marked with an asterisk): Cyclustera capito (Rudolphi, 1819); *C. ibisae (Schmidt & Bush, 1972); *Dendrouterina ardeae Rausch, 1955; *D. herodiae Fuhrmann, 1912; *D. papillifera (Fuhrmann, 1908); Glossocercus auritus (Rudolphi, 1819); *Neogryporhynchus cheilancristrotus (Wedl, 1855); Paradilepis caballeroi Rysavy & Macko, 1973; Paradilepis sp.; Parvitaenia cochlearii Coil, 1955; and Valipora mutabilis Linton, 1927. Dendrouteria herodiae is reported from America for the first time. New definitive hosts are Phalacrocorax olivaceus for C. capito, N. cheilancristrotus and P. caballeroi; Casmerodius albus and Egretta thula for G. auritus; and E. thula for D. herodiae. Data on the morphology of the rostellar hooks of all species, their hosts and distribution in Mexico are provided.

  4. A survey of sport fish use on the Copper River Delta, Alaska.

    Science.gov (United States)

    Dirk W. Lang

    2010-01-01

    Aerial counts, in-person interviews, and mail-in questionnaires were used to survey sport fish use during the coho salmon (Oncorhynchus kisutch Walbaum) season on the Copper River Delta, Alaska from 2002 through 2006. Angler counts provided an index of use on individual streams and were used to develop a spatial database exhibiting patterns of use...

  5. Survey of protected terrestrial vertebrates on the Oak Ridge Reservation. Final report

    Energy Technology Data Exchange (ETDEWEB)

    Mitchell, J.M.; Vail, E.R.; Webb, J.W.; King, A.L.; Hamlett, P.A. [Oak Ridge National Lab., TN (United States). Environmental Restoration Div.

    1996-05-01

    Surveys of protected terrestrial vertebrates on the Oak Ridge Reservation (ORR) were conducted from October 1994 through May 1996. The surveys were undertaken to help avoid or minimize the potential impacts of projects on the ORR to species listed by the state or federal government as endangered, threatened, or in need-of-management; federal species of concern were included. Results of the survey will also assist in effectively managing the ORR. Currently, there are 69 species of federal- or state-listed terrestrial vertebrates (20 reptiles and amphibians, 20 mammals, and 29 birds) that may occur in Tennessee. Listed animal species that might be present on the ORR were targeted for survey using a prioritization system based on historical and recent sightings, known species distributions, presence of suitable habitat, literature reviews, and personal communications. Survey methods included trapping, seining, monitoring artificial covers, active searching, and avian surveys. Surveys were conducted during the time of year when each targeted species was most likely to be encountered. The report also includes ancillary information. Records are provided for nonlisted species (44 species of reptiles and amphibians, 155 species of birds, and 28 species of mammals). Categorization of survey sites into 1 or more of 19 habitat types, which are briefly described, is presented. Notes are summarized on the occurrence of threatened and endangered species on the ORR. The report also lists threatened and endangered species not found that might be located by additional surveys, recommends three survey areas for natural-area status due to wildlife value, and suggests several avenues for future work.

  6. Survey of protected terrestrial vertebrates on the Oak Ridge Reservation. Final report

    International Nuclear Information System (INIS)

    Mitchell, J.M.; Vail, E.R.; Webb, J.W.; King, A.L.; Hamlett, P.A.

    1996-05-01

    Surveys of protected terrestrial vertebrates on the Oak Ridge Reservation (ORR) were conducted from October 1994 through May 1996. The surveys were undertaken to help avoid or minimize the potential impacts of projects on the ORR to species listed by the state or federal government as endangered, threatened, or in need-of-management; federal species of concern were included. Results of the survey will also assist in effectively managing the ORR. Currently, there are 69 species of federal- or state-listed terrestrial vertebrates (20 reptiles and amphibians, 20 mammals, and 29 birds) that may occur in Tennessee. Listed animal species that might be present on the ORR were targeted for survey using a prioritization system based on historical and recent sightings, known species distributions, presence of suitable habitat, literature reviews, and personal communications. Survey methods included trapping, seining, monitoring artificial covers, active searching, and avian surveys. Surveys were conducted during the time of year when each targeted species was most likely to be encountered. The report also includes ancillary information. Records are provided for nonlisted species (44 species of reptiles and amphibians, 155 species of birds, and 28 species of mammals). Categorization of survey sites into 1 or more of 19 habitat types, which are briefly described, is presented. Notes are summarized on the occurrence of threatened and endangered species on the ORR. The report also lists threatened and endangered species not found that might be located by additional surveys, recommends three survey areas for natural-area status due to wildlife value, and suggests several avenues for future work

  7. Birds surveyed in the harvested and unharvested areas of a reduced-impact logged forestry concession, located in the lowland subtropical humid forests of the Department of Santa Cruz, Bolivia.

    Directory of Open Access Journals (Sweden)

    Felton, A.

    2007-01-01

    Full Text Available As part of a larger study of reduced-impactlogging effects on bird community composition,we surveyed birds from December to Februaryduring the 2003-2004 wet-season within harvestedand unharvested blocks of the La Chonta forestryconcession, Department of Santa Cruz, Bolivia.The logged forest was harvested using reduced-impactlogging techniques between one and fouryears previously. During point count surveys, weidentified 5062 individual birds, belonging to 155species, and 33 families. We provide a list of birdspecies found within the harvested andunharvested blocks of the concession for thebenefit of other researchers assessing theresponses of Neotropical avifauna to disturbance,and to facilitate increased understanding of thediverse bird assemblages found within thelowland subtropical humid forests of Bolivia.

  8. Total lymphocyte count as a substitute to cd4 count in management of hiv infected individuals in resource limited society

    International Nuclear Information System (INIS)

    Daud, M.Y.; Qazi, R.A.

    2015-01-01

    Pakistan is a resource limited society and gold standard parameters to monitor HIV disease activity are very costly. The objective of the study was to evaluate total lymphocyte count (TLC) as a surrogate to CD4 count to monitor disease activity in HIV/AIDS in resource limited society. Methods: This cross sectional study was carried out at HIV/AIDS treatment centre, Pakistan Institute of Medical Sciences (PIMS), Islamabad. A total of seven hundred and seventy four (774) HIV positive patients were enrolled in this study, and their CD4 count and total lymphocyte count were checked to find any correlation between the two by using Spearman ranked correlation coefficient. Results: The mean CD4 count was (434.30 ± 269.23), with minimum CD4 count of (9.00), and maximum of (1974.00). The mean total lymphocyte count (TLC) was (6764.0052 ± 2364.02) with minimum TLC (1200.00) and maximum TLC was (20200.00). Using the Pearson's correlation (r) there was a significant and positive correlation between TLC and CD4 count. (r2=0.127 and p=0.000) at 0.01 level. Conclusion: Our study showed a significant positive correlation between CD4 count and total lymphocyte count (TLC), so TLC can be used as a marker of disease activity in HIV infected patients. (author)

  9. Increase in distribution records of owl species in Manitoba based on a volunteer nocturnal survey using Boreal Owl (Aegolius funereus) and Great Gray Owl (Strix nebulosa) playback

    Science.gov (United States)

    James R. Duncan; Patricia A. Duncan

    1997-01-01

    From 1991 through 1995, extensive owl surveys were conducted in late March and early April in Manitoba. Prior to these surveys, distribution records of owls covered only 16-71 per cent of their expected range in Manitoba. The degree to which the survey increased the documented range varied from no increase (6 of 12 species) up to an 88 per cent increase for the...

  10. Estimating spatial and temporal components of variation in count data using negative binomial mixed models

    Science.gov (United States)

    Irwin, Brian J.; Wagner, Tyler; Bence, James R.; Kepler, Megan V.; Liu, Weihai; Hayes, Daniel B.

    2013-01-01

    Partitioning total variability into its component temporal and spatial sources is a powerful way to better understand time series and elucidate trends. The data available for such analyses of fish and other populations are usually nonnegative integer counts of the number of organisms, often dominated by many low values with few observations of relatively high abundance. These characteristics are not well approximated by the Gaussian distribution. We present a detailed description of a negative binomial mixed-model framework that can be used to model count data and quantify temporal and spatial variability. We applied these models to data from four fishery-independent surveys of Walleyes Sander vitreus across the Great Lakes basin. Specifically, we fitted models to gill-net catches from Wisconsin waters of Lake Superior; Oneida Lake, New York; Saginaw Bay in Lake Huron, Michigan; and Ohio waters of Lake Erie. These long-term monitoring surveys varied in overall sampling intensity, the total catch of Walleyes, and the proportion of zero catches. Parameter estimation included the negative binomial scaling parameter, and we quantified the random effects as the variations among gill-net sampling sites, the variations among sampled years, and site × year interactions. This framework (i.e., the application of a mixed model appropriate for count data in a variance-partitioning context) represents a flexible approach that has implications for monitoring programs (e.g., trend detection) and for examining the potential of individual variance components to serve as response metrics to large-scale anthropogenic perturbations or ecological changes.

  11. Survey of protected terrestrial vertebrates on the Oak Ridge Reservation. Final report

    Energy Technology Data Exchange (ETDEWEB)

    Mitchell, J.M.; Vail, E.R.; Webb, J.W.; Evans, J.W. [and others

    1996-07-01

    This document is the final report on surveys of protected terrestrial vertebrates on the Oak Ridge Reservation (ORR) conducted from October 1994 through May 1996. The surveys were undertaken to gain information that could help prevent or minimize the potential impacts of projects on the ORR to species listed by the state or federal government as endangered, threatened, or in need of management; federal species of concern were also included. The results of the survey will assist in the effective management of the natural resources of the ORR. Currently, there are 69 species of federal or state listed terrestrial vertebrates (20 reptiles and amphibians, 20 mammals, and 29 birds) that may occur in Tennessee. Listed animal species that might be present on the ORR were targeted for survey using a prioritization system based on historical and recent sightings, known species distributions, presence of suitable habitat, literature reviews, and personal communications. Survey methods included trapping, seining, monitoring of artificial covers, active searching, and avian surveys. Surveys were conducted during the time of year when each targeted species was most likely to be encountered. The surveys confirmed the presence of 20 threatened and endangered species on the ORR. This report also includes some ancillary information. Records are provided for nonlisted species (44 species of reptiles and amphibians, 155 species of birds, and 28 species of mammals). Categorization of survey sites into 1 or more of 19 habitat types, which are briefly described, is presented. Notes are summarized on the occurrence of threatened and endangered species on the ORR. Finally, this report also lists threatened and endangered species not found that might be located by additional surveys, recommends three survey areas for natural-area status due to wildlife value, and suggests several avenues for future work.

  12. A counting-card circuit based on PCI bus

    International Nuclear Information System (INIS)

    Shi Jing; Li Yong; Chinese Academy of Sciences, Lanzhou; Su Hong; Dong Chengfu; Li Xiaogang; Ma Xiaoli

    2004-01-01

    A counting-card circuit based on PCI bus that we developed recently used for advanced personal computer will be introduced in this paper briefly. The maximum count capacity of this counting-card is 10 9 -1, ranging from 0 to 999 999 999, the maximum counting time range, 1 x 10 6 s, can be set in 1 cycle, the maximum counting rate is 20 MHz for positive input. (authors)

  13. Aerial population estimates of wild horses (Equus caballus) in the adobe town and salt wells creek herd management areas using an integrated simultaneous double-count and sightability bias correction technique

    Science.gov (United States)

    Lubow, Bruce C.; Ransom, Jason I.

    2007-01-01

    An aerial survey technique combining simultaneous double-count and sightability bias correction methodologies was used to estimate the population of wild horses inhabiting Adobe Town and Salt Wells Creek Herd Management Areas, Wyoming. Based on 5 surveys over 4 years, we conclude that the technique produced estimates consistent with the known number of horses removed between surveys and an annual population growth rate of 16.2 percent per year. Therefore, evidence from this series of surveys supports the validity of this survey method. Our results also indicate that the ability of aerial observers to see horse groups is very strongly dependent on skill of the individual observer, size of the horse group, and vegetation cover. It is also more modestly dependent on the ruggedness of the terrain and the position of the sun relative to the observer. We further conclude that censuses, or uncorrected raw counts, are inadequate estimates of population size for this herd. Such uncorrected counts were all undercounts in our trials, and varied in magnitude from year to year and observer to observer. As of April 2007, we estimate that the population of the Adobe Town /Salt Wells Creek complex is 906 horses with a 95 percent confidence interval ranging from 857 to 981 horses.

  14. Nature or Nurture in finger counting: a review on the determinants of the direction of number-finger mapping

    Directory of Open Access Journals (Sweden)

    Paola ePrevitali

    2011-12-01

    Full Text Available The spontaneous use of finger counting has been for long recognised as critical to the acquisition of number skills. Recently, the great interest on space-number associations shifted attention to the practice of finger counting itself, and specifically, to its spatial components. Besides general cross-cultural differences in mapping numbers onto fingers, contrasting results have been reported with regard to the directional features of this mapping. The key issue we address is to what extent directionality is culturally-mediated, i.e., linked to the conventional reading-writing system direction, and/or biologically determined, i.e. linked to hand dominance. Although the preferred starting hand for counting seems to depend on the surveyed population, even within the same population high inter-individual variability minimises the role of cultural factors. Even if so far largely overlooked, handedness represents a sound candidate for shaping finger counting direction. Here we discuss adults and developmental evidence in support of this view and we reconsider the plausibility of multiple and coexistent number-space mapping in physical and representational space.

  15. TU-FG-209-03: Exploring the Maximum Count Rate Capabilities of Photon Counting Arrays Based On Polycrystalline Silicon

    Energy Technology Data Exchange (ETDEWEB)

    Liang, A K; Koniczek, M; Antonuk, L E; El-Mohri, Y; Zhao, Q [University of Michigan, Ann Arbor, MI (United States)

    2016-06-15

    Purpose: Photon counting arrays (PCAs) offer several advantages over conventional, fluence-integrating x-ray imagers, such as improved contrast by means of energy windowing. For that reason, we are exploring the feasibility and performance of PCA pixel circuitry based on polycrystalline silicon. This material, unlike the crystalline silicon commonly used in photon counting detectors, lends itself toward the economic manufacture of radiation tolerant, monolithic large area (e.g., ∼43×43 cm2) devices. In this presentation, exploration of maximum count rate, a critical performance parameter for such devices, is reported. Methods: Count rate performance for a variety of pixel circuit designs was explored through detailed circuit simulations over a wide range of parameters (including pixel pitch and operating conditions) with the additional goal of preserving good energy resolution. The count rate simulations assume input events corresponding to a 72 kVp x-ray spectrum with 20 mm Al filtration interacting with a CZT detector at various input flux rates. Output count rates are determined at various photon energy threshold levels, and the percentage of counts lost (e.g., due to deadtime or pile-up) is calculated from the ratio of output to input counts. The energy resolution simulations involve thermal and flicker noise originating from each circuit element in a design. Results: Circuit designs compatible with pixel pitches ranging from 250 to 1000 µm that allow count rates over a megacount per second per pixel appear feasible. Such rates are expected to be suitable for radiographic and fluoroscopic imaging. Results for the analog front-end circuitry of the pixels show that acceptable energy resolution can also be achieved. Conclusion: PCAs created using polycrystalline silicon have the potential to offer monolithic large-area detectors with count rate performance comparable to those of crystalline silicon detectors. Further improvement through detailed circuit

  16. Recursive algorithms for phylogenetic tree counting.

    Science.gov (United States)

    Gavryushkina, Alexandra; Welch, David; Drummond, Alexei J

    2013-10-28

    In Bayesian phylogenetic inference we are interested in distributions over a space of trees. The number of trees in a tree space is an important characteristic of the space and is useful for specifying prior distributions. When all samples come from the same time point and no prior information available on divergence times, the tree counting problem is easy. However, when fossil evidence is used in the inference to constrain the tree or data are sampled serially, new tree spaces arise and counting the number of trees is more difficult. We describe an algorithm that is polynomial in the number of sampled individuals for counting of resolutions of a constraint tree assuming that the number of constraints is fixed. We generalise this algorithm to counting resolutions of a fully ranked constraint tree. We describe a quadratic algorithm for counting the number of possible fully ranked trees on n sampled individuals. We introduce a new type of tree, called a fully ranked tree with sampled ancestors, and describe a cubic time algorithm for counting the number of such trees on n sampled individuals. These algorithms should be employed for Bayesian Markov chain Monte Carlo inference when fossil data are included or data are serially sampled.

  17. A relationship between salivary flow rates and Candida counts in patients with xerostomia.

    Science.gov (United States)

    Nadig, Suchetha Devendrappa; Ashwathappa, Deepak Timmasandra; Manjunath, Muniraju; Krishna, Sowmya; Annaji, Araleri Gopalkrishna; Shivaprakash, Praveen Kunigal

    2017-01-01

    Most of the adult population is colonized by Candida in their oral cavity. The process of colonization depends on several factors, including the interaction between Candida and salivary proteins. Therefore, salivary gland hypofunction may alter the oral microbiota and increase the risk for opportunistic infections, such as candidiasis. Hence, it is necessary to evaluate the relationship between salivary flow rates (SFRs) and Candida colony counts in the saliva of patients with xerostomia. This study aims to determine and evaluate the relationship between SFRs and Candida colony forming units (CFUs) in patients with xerostomia. This study was a descriptive study. The study participants were taken from the patients attending outpatient department in a private dental college. Fifty patients, who reported xerostomia in a questionnaire of the symptoms of xerostomia, were selected. Chewing stimulated whole saliva samples were collected from them and their SFRs were assessed. Saliva samples were inoculated in the Sabouraud dextrose agar culture media for 24-48 h, and Candida CFUs were counted. Chi-squared test was used to analyze the data. There was a significant inverse relationship between salivary flow and candida CFUs count when patients with high colony counts were analyzed (cutoff point of 400 or greater CFU/mL). Females had less SFR than males. Most of the patients who had hyposalivation were taking medication for the underlying systemic diseases. Candida albicans was the most frequent species. There was a significantly negative correlation between SFRs and Candida CFUs in the patients with xerostomia.

  18. A 6-cm deep sky survey

    International Nuclear Information System (INIS)

    Fomalont, E.B.; Kellermann, K.I.; Wall, J.V.

    1983-01-01

    In order to extend radio source counts to lower flux density, the authors have used the VLA to survey a small region of sky at 4.885 GHz (6 cm) to a limiting flux density of 50 μJy. Details of this deep survey are given in the paper by kellermann et al. (these proceedings). In addition, they have observed 10 other nearby fields to a limiting flux density of 350 μJy in order to provide better statistics on sources of intermediate flux density. (Auth.)

  19. Photon-counting image sensors

    CERN Document Server

    Teranishi, Nobukazu; Theuwissen, Albert; Stoppa, David; Charbon, Edoardo

    2017-01-01

    The field of photon-counting image sensors is advancing rapidly with the development of various solid-state image sensor technologies including single photon avalanche detectors (SPADs) and deep-sub-electron read noise CMOS image sensor pixels. This foundational platform technology will enable opportunities for new imaging modalities and instrumentation for science and industry, as well as new consumer applications. Papers discussing various photon-counting image sensor technologies and selected new applications are presented in this all-invited Special Issue.

  20. Low background gas flow beta counting system [Paper No.:M2

    International Nuclear Information System (INIS)

    Abani, M.C.; Anilkumar, S.; Bhende, D.R.; Krishnan, Narayani; Babu, D.A.R.

    1993-01-01

    It is difficult to count beta samples of low specific activity in conventional types of counting systems which have inherently high background. This is specially true in case of environmental samples. A gas flow type beta counter has been developed which have the twin advantage of high efficiency and low background. This system uses a gas flow type main counter and another gas flow type guard counter working on the same principle in anticoincidence mode. Both counters are operated in G.M. region. With this anticoincidence arrangement and lead shielding of 3 inch, the system has the background of the order of 1 cpm and efficiency of 40% for 40 K beta and 14% for 14 C beta. The electronics developed includes a quenching cum coincidence-anticoincidence unit, EHT and a counter timer. This paper describes in detail the development and operational experience with the system. A number of units are already operational at BARC and at Environmental Survey Laboratories set up by Department of Atomic Energy and at various other institutions. (author). 4 refs., 2 figs

  1. Detection rates of geckos in visual surveys: Turning confounding variables into useful knowledge

    Science.gov (United States)

    Lardner, Bjorn; Rodda, Gordon H.; Yackel Adams, Amy A.; Savidge, Julie A.; Reed, Robert N.

    2016-01-01

    Transect surveys without some means of estimating detection probabilities generate population size indices prone to bias because survey conditions differ in time and space. Knowing what causes such bias can help guide the collection of relevant survey covariates, correct the survey data, anticipate situations where bias might be unacceptably large, and elucidate the ecology of target species. We used negative binomial regression to evaluate confounding variables for gecko (primarily Hemidactylus frenatus and Lepidodactylus lugubris) counts on 220-m-long transects surveyed at night, primarily for snakes, on 9,475 occasions. Searchers differed in gecko detection rates by up to a factor of six. The worst and best headlamps differed by a factor of at least two. Strong winds had a negative effect potentially as large as those of searchers or headlamps. More geckos were seen during wet weather conditions, but the effect size was small. Compared with a detection nadir during waxing gibbous (nearly full) moons above the horizon, we saw 28% more geckos during waning crescent moons below the horizon. A sine function suggested that we saw 24% more geckos at the end of the wet season than at the end of the dry season. Fluctuations on a longer timescale also were verified. Disturbingly, corrected data exhibited strong short-term fluctuations that covariates apparently failed to capture. Although some biases can be addressed with measured covariates, others will be difficult to eliminate as a significant source of error in longterm monitoring programs.

  2. Generalized linear models and point count data: statistical considerations for the design and analysis of monitoring studies

    Science.gov (United States)

    Nathaniel E. Seavy; Suhel Quader; John D. Alexander; C. John Ralph

    2005-01-01

    The success of avian monitoring programs to effectively guide management decisions requires that studies be efficiently designed and data be properly analyzed. A complicating factor is that point count surveys often generate data with non-normal distributional properties. In this paper we review methods of dealing with deviations from normal assumptions, and we focus...

  3. Platelet counting using the Coulter electronic counter.

    Science.gov (United States)

    Eggleton, M J; Sharp, A A

    1963-03-01

    A method for counting platelets in dilutions of platelet-rich plasm using the Coulter electronic counter is described.(1) The results obtained show that such platelet counts are at least as accurate as the best methods of visual counting. The various technical difficulties encountered are discussed.

  4. Automated uranium analysis by delayed-neutron counting

    International Nuclear Information System (INIS)

    Kunzendorf, H.; Loevborg, L.; Christiansen, E.M.

    1980-10-01

    Automated uranium analysis by fission-induced delayed-neutron counting is described. A short description is given of the instrumentation including transfer system, process control, irradiation and counting sites, and computer operations. Characteristic parameters of the facility (sample preparations, background, and standards) are discussed. A sensitivity of 817 +- 22 counts per 10 -6 g U is found using irradiation, delay, and counting times of 20 s, 5 s, and 10 s, respectively. Presicion is generally less than 1% for normal geological samples. Critical level and detection limits for 7.5 g samples are 8 and 16 ppb, respectively. The importance of some physical and elemental interferences are outlined. Dead-time corrections of measured count rates are necessary and a polynomical expression is used for count rates up to 10 5 . The presence of rare earth elements is regarded as the most important elemental interference. A typical application is given and other areas of application are described. (auther)

  5. Count rate effect in proportional counters

    International Nuclear Information System (INIS)

    Bednarek, B.

    1980-01-01

    A new concept is presented explaining changes in spectrometric parameters of proportional counters which occur due to varying count rate. The basic feature of this concept is that the gas gain of the counter remains constant in a wide range of count rate and that the decrease in the pulse amplitude and the detorioration of the energy resolution observed are the results of changes in the shape of original current pulses generated in the active volume of the counter. In order to confirm the validity of this statement, measurements of the gas amplification factor have been made in a wide count rate range. It is shown that above a certain critical value the gas gain depends on both the operating voltage and the count rate. (author)

  6. Microprocessor based mobile radiation survey system

    International Nuclear Information System (INIS)

    Gilbert, R.W.; McCormack, W.D.

    1983-12-01

    A microprocessor-based system has been designed and constructed to enhance the performance of routine radiation surveys on roads within the Hanford site. This device continually monitors system performance and output from four sodium iodide detectors mounted on the rear bumper of a 4-wheel drive truck. The gamma radiation count rate in counts-per-second is monitored, and a running average computed, with the results compared to predefined limits. If an abnormal instantaneous or average count rate is detected, an alarm is sounded with responsible data displayed on a liquid crystal panel in the cab of the vehicle. The system also has the capability to evaluate detector output using multiple time constants and to perform more complex tests and comparison of the data. Data can be archived for later analysis on conventional chart recorders or stored in digital form on magnetic tape or other digital storage media. 4 figures

  7. Measures of large-scale structure in the CfA redshift survey slices

    International Nuclear Information System (INIS)

    De Lapparent, V.; Geller, M.J.; Huchra, J.P.

    1991-01-01

    Variations of the counts-in-cells with cell size are used here to define two statistical measures of large-scale clustering in three 6 deg slices of the CfA redshift survey. A percolation criterion is used to estimate the filling factor which measures the fraction of the total volume in the survey occupied by the large-scale structures. For the full 18 deg slice of the CfA redshift survey, f is about 0.25 + or - 0.05. After removing groups with more than five members from two of the slices, variations of the counts in occupied cells with cell size have a power-law behavior with a slope beta about 2.2 on scales from 1-10/h Mpc. Application of both this statistic and the percolation analysis to simulations suggests that a network of two-dimensional structures is a better description of the geometry of the clustering in the CfA slices than a network of one-dimensional structures. Counts-in-cells are also used to estimate at 0.3 galaxy h-squared/Mpc the average galaxy surface density in sheets like the Great Wall. 46 refs

  8. Criterion 1: Conservation of biological diversity - Indicator 6: The number of forest dependent species

    Science.gov (United States)

    Curtis H. Flather; Taylor H. Ricketts; Carolyn Hull Sieg; Michael S. Knowles; John P. Fay; Jason McNees

    2003-01-01

    This indicator monitors the number of native species that are associated with forest habitats. Because one of the more general sign of ecosystem stress is a reduction in the variety of organisms inhabiting a given locale, species counts are often used in assessing ecosystem wellbeing. Data on the distribution of 689 tree and 1,486 terrestrial animal species associated...

  9. Resonance ionization spectroscopy: Counting noble gas atoms

    International Nuclear Information System (INIS)

    Hurst, G.S.; Payne, M.G.; Chen, C.H.; Willis, R.D.; Lehmann, B.E.; Kramer, S.D.

    1981-01-01

    The purpose of this paper is to describe new work on the counting of noble gas atoms, using lasers for the selective ionization and detectors for counting individual particles (electrons or positive ions). When positive ions are counted, various kinds of mass analyzers (magnetic, quadrupole, or time-of-flight) can be incorporated to provide A selectivity. We show that a variety of interesting and important applications can be made with atom-counting techniques which are both atomic number (Z) and mass number (A) selective. (orig./FKS)

  10. 10C survey of radio sources at 15.7 GHz - II. First results

    Science.gov (United States)

    AMI Consortium; Davies, Mathhew L.; Franzen, Thomas M. O.; Waldram, Elizabeth M.; Grainge, Keith J. B.; Hobson, Michael P.; Hurley-Walker, Natasha; Lasenby, Anthony; Olamaie, Malak; Pooley, Guy G.; Riley, Julia M.; Rodríguez-Gonzálvez, Carmen; Saunders, Richard D. E.; Scaife, Anna M. M.; Schammel, Michel P.; Scott, Paul F.; Shimwell, Timothy W.; Titterington, David J.; Zwart, Jonathan T. L.

    2011-08-01

    In a previous paper (Paper I), the observational, mapping and source-extraction techniques used for the Tenth Cambridge (10C) Survey of Radio Sources were described. Here, the first results from the survey, carried out using the Arcminute Microkelvin Imager Large Array (LA) at an observing frequency of 15.7 GHz, are presented. The survey fields cover an area of ≈27 deg2 to a flux-density completeness of 1 mJy. Results for some deeper areas, covering ≈12 deg2, wholly contained within the total areas and complete to 0.5 mJy, are also presented. The completeness for both areas is estimated to be at least 93 per cent. The 10C survey is the deepest radio survey of any significant extent (≳0.2 deg2) above 1.4 GHz. The 10C source catalogue contains 1897 entries and is available online. The source catalogue has been combined with that of the Ninth Cambridge Survey to calculate the 15.7-GHz source counts. A broken power law is found to provide a good parametrization of the differential count between 0.5 mJy and 1 Jy. The measured source count has been compared with that predicted by de Zotti et al. - the model is found to display good agreement with the data at the highest flux densities. However, over the entire flux-density range of the measured count (0.5 mJy to 1 Jy), the model is found to underpredict the integrated count by ≈30 per cent. Entries from the source catalogue have been matched with those contained in the catalogues of the NRAO VLA Sky Survey and the Faint Images of the Radio Sky at Twenty-cm survey (both of which have observing frequencies of 1.4 GHz). This matching provides evidence for a shift in the typical 1.4-GHz spectral index to 15.7-GHz spectral index of the 15.7-GHz-selected source population with decreasing flux density towards sub-mJy levels - the spectra tend to become less steep. Automated methods for detecting extended sources, developed in Paper I, have been applied to the data; ≈5 per cent of the sources are found to be extended

  11. Improving the counting efficiency in time-correlated single photon counting experiments by dead-time optimization

    Energy Technology Data Exchange (ETDEWEB)

    Peronio, P.; Acconcia, G.; Rech, I.; Ghioni, M. [Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, Piazza Leonardo da Vinci 32, 20133 Milano (Italy)

    2015-11-15

    Time-Correlated Single Photon Counting (TCSPC) has been long recognized as the most sensitive method for fluorescence lifetime measurements, but often requiring “long” data acquisition times. This drawback is related to the limited counting capability of the TCSPC technique, due to pile-up and counting loss effects. In recent years, multi-module TCSPC systems have been introduced to overcome this issue. Splitting the light into several detectors connected to independent TCSPC modules proportionally increases the counting capability. Of course, multi-module operation also increases the system cost and can cause space and power supply problems. In this paper, we propose an alternative approach based on a new detector and processing electronics designed to reduce the overall system dead time, thus enabling efficient photon collection at high excitation rate. We present a fast active quenching circuit for single-photon avalanche diodes which features a minimum dead time of 12.4 ns. We also introduce a new Time-to-Amplitude Converter (TAC) able to attain extra-short dead time thanks to the combination of a scalable array of monolithically integrated TACs and a sequential router. The fast TAC (F-TAC) makes it possible to operate the system towards the upper limit of detector count rate capability (∼80 Mcps) with reduced pile-up losses, addressing one of the historic criticisms of TCSPC. Preliminary measurements on the F-TAC are presented and discussed.

  12. Arduino based radiation survey meter

    International Nuclear Information System (INIS)

    Rahman, Nur Aira Abd; Lombigit, Lojius; Abdullah, Nor Arymaswati; Azman, Azraf; Dolah, Taufik; Jaafar, Zainudin; Mohamad, Glam Hadzir Patai; Ramli, Abd Aziz Mhd; Zain, Rasif Mohd; Said, Fazila; Khalid, Mohd Ashhar; Taat, Muhamad Zahidee; Muzakkir, Amir

    2016-01-01

    This paper presents the design of new digital radiation survey meter with LND7121 Geiger Muller tube detector and Atmega328P microcontroller. Development of the survey meter prototype is carried out on Arduino Uno platform. 16-bit Timer1 on the microcontroller is utilized as external pulse counter to produce count per second or CPS measurement. Conversion from CPS to dose rate technique is also performed by Arduino to display results in micro Sievert per hour (μSvhr −1 ). Conversion factor (CF) value for conversion of CPM to μSvhr −1 determined from manufacturer data sheet is compared with CF obtained from calibration procedure. The survey meter measurement results are found to be linear for dose rates below 3500 µSv/hr

  13. Very deep IRAS survey - constraints on the evolution of starburst galaxies

    International Nuclear Information System (INIS)

    Hacking, P.; Houck, J.R.; Condon, J.J.; National Radio Astronomy Observatory, Charlottesville, VA)

    1987-01-01

    Counts of sources (primarily starburst galaxies) from a deep 60 microns IRAS survey published by Hacking and Houck (1987) are compared with four evolutionary models. The counts below 100 mJy are higher than expected if no evolution has taken place out to a redshift of approximately 0.2. Redshift measurements of the survey sources should be able to distinguish between luminosity-evolution and density-evolution models and detect as little as a 20 percent brightening or increase in density of infrared sources per billion years ago (H/0/ = 100 km/s per Mpc). Starburst galaxies cannot account for the reported 100 microns background without extreme evolution at high redshifts. 21 references

  14. Enumerating the Hidden Homeless: Strategies to Estimate the Homeless Gone Missing From a Point-in-Time Count

    Directory of Open Access Journals (Sweden)

    Agans Robert P.

    2014-06-01

    Full Text Available To receive federal homeless funds, communities are required to produce statistically reliable, unduplicated counts or estimates of homeless persons in sheltered and unsheltered locations during a one-night period (within the last ten days of January called a point-in-time (PIT count. In Los Angeles, a general population telephone survey was implemented to estimate the number of unsheltered homeless adults who are hidden from view during the PIT count. Two estimation approaches were investigated: i the number of homeless persons identified as living on private property, which employed a conventional household weight for the estimated total (Horvitz-Thompson approach; and ii the number of homeless persons identified as living on a neighbor’s property, which employed an additional adjustment derived from the size of the neighborhood network to estimate the total (multiplicity-based approach. This article compares the results of these two methods and discusses the implications therein.

  15. CalCOFI Larvae Counts Positive Tows

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Fish larvae counts and standardized counts for eggs captured in CalCOFI icthyoplankton nets (primarily vertical [Calvet or Pairovet], oblique [bongo or ring nets],...

  16. Set of counts by scintillations for atmospheric samplings

    International Nuclear Information System (INIS)

    Appriou, D.; Doury, A.

    1962-01-01

    The author reports the development of a scintillation-based counting assembly with the following characteristics: a photo-multiplier with a wide photo-cathode, a thin plastic scintillator for the counting of beta + alpha (and possibility of mounting an alpha scintillator), a relatively small own motion with respect to activities to be counted, a weakly varying efficiency. The authors discuss the counting objective, present equipment tests (counter, proportional amplifier and pre-amplifier, input drawer). They describe the apparatus operation, discuss the selection of scintillators, report the study of the own movement (electron-based background noise, total background noise, background noise reduction), discuss counts (influence of the external source, sensitivity to alpha radiations, counting homogeneity, minimum detectable activity) and efficiencies

  17. Isolation and evaluation of Candida species and their association ...

    African Journals Online (AJOL)

    species and their association with CD4+ T cells counts in HIV patients with diarrhoea. Afri Health Sci. .... All reported p values were two-sided and a p-value ..... HIV epidemiology in Ni- geria. .... Yoganbi KA, Mbacham WF, Nubia KK, Singh RM.

  18. Track counting in radon dosimetry

    International Nuclear Information System (INIS)

    Fesenbeck, Ingo; Koehler, Bernd; Reichert, Klaus-Martin

    2013-01-01

    The newly developed, computer-controlled track counting system is capable of imaging and analyzing the entire area of nuclear track detectors. The high optical resolution allows a new analysis approach for the process of automated counting using digital image processing technologies. This way, higher exposed detectors can be evaluated reliably by an automated process as well. (orig.)

  19. CalCOFI Egg Counts Positive Tows

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Fish egg counts and standardized counts for eggs captured in CalCOFI icthyoplankton nets (primarily vertical [Calvet or Pairovet], oblique [bongo or ring nets], and...

  20. Regression Models For Multivariate Count Data.

    Science.gov (United States)

    Zhang, Yiwen; Zhou, Hua; Zhou, Jin; Sun, Wei

    2017-01-01

    Data with multivariate count responses frequently occur in modern applications. The commonly used multinomial-logit model is limiting due to its restrictive mean-variance structure. For instance, analyzing count data from the recent RNA-seq technology by the multinomial-logit model leads to serious errors in hypothesis testing. The ubiquity of over-dispersion and complicated correlation structures among multivariate counts calls for more flexible regression models. In this article, we study some generalized linear models that incorporate various correlation structures among the counts. Current literature lacks a treatment of these models, partly due to the fact that they do not belong to the natural exponential family. We study the estimation, testing, and variable selection for these models in a unifying framework. The regression models are compared on both synthetic and real RNA-seq data.

  1. FY 1998 geothermal development promotion survey. Report on the environmental effect survey (No. A-4 Kunbetsu-dake area); 1998 nendo chinetsu kaihatsu sokushin chosa. Kankyo eikyo chosa hokokusho (No.A-4 Kunbetsudake chiiki)

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1999-09-30

    Of the FY 1998 geothermal development promotion survey, the primary environmental effect survey in the Kunbetsu-dake area was conducted, and the results were arranged. In the well drilling survey, etc., the survey was made aiming at extracting areas to be preserved from an environmental aspect. The results of the survey were summarized as follows: As to the mammalia, 12 families 46 species were confirmed in the area surveyed and the periphery by literature survey. Out of them, the noticeable species which are considered important from an academic viewpoint are 10 families 19 species. As to the aves, 55 families 340 species were confirmed, of which 29 families 79 species are noticeable species. About the amphibia/reptilia, 3 families 3 species in the amphibia and 4 families 6 species in the reptilia were confirmed by literature and hearing survey. The noticeable species is 1 family 1 species in the amphilia. Concerning the terrestrial insecta, 135 families 873 species were confirmed, and the noticeable species is 11 families 20 species. As to the flora, 115 families 1055 species were confirmed, and the noticeable species is 46 families 126 species. Relating to the living vegetation, the one higher than 9 in nature reserves shows a substantial rate, and the periphery of Kaibetsu-dake is designated as the specified flora colony. (NEDO)

  2. INFLUENCE OF SOMATIC CELL COUNT IN THE COMPOSITION OF GIROLANDO COW’S MILK IN TROPICAL ZONE

    Directory of Open Access Journals (Sweden)

    Vanessa Nunes Silva

    2016-08-01

    Full Text Available Bovine mastitis has been identified as the main disease affecting dairy cattle worldwide. Somatic Cell Count (SCC in milk is one of the most important indicators to evaluate the udder health of cows due to the high direct correlation with the mammary gland’s degree of infection. This study aimed to evaluate the different ranges of somatic cell count (SCC on the composition of bovine milk as well as finding a correlation between somatic cell count and body condition score on milk production and composition of this species. The experiment was conducted on a commercial farm located in São José de Mipibu, Rio Grande do Norte, Brazil. The same cows were milked mechanically, obtaining a milk production record for the period of December 2011 to May 2012. For this, 24 Girolando breed cows (3/4 and 7/8 were used, being 50% primiparous and 50% multiparous with average production 7.51 ± 2.58 kg day-1 and 10.98 ± 2.49 kg day-1, respectively. The cows were milked mechanically, obtaining a record of milk production over a period of five months, and milk samples were collected and sent for laboratory analysis. The levels of milk composition were evaluated. Lactose, non-fat solids and milk urea nitrogen were influenced by different intervals of somatic cell count of milk. In milk samples from primiparous and multiparous cows, positive correlations between somatic cell count and some components were found. As for body condition score, significant correlations were also found for milk production and composition. It was concluded the different levels of somatic cell count influenced the percentage of lactose, non-fat solids and milk urea nitrogen. Somatic cell count and body condition score also showed significant correlations with milk production and composition.

  3. Validity of total leucocytes count and neutrophil count (differential leucocytes) in diagnosing suspected acute appendicitis

    International Nuclear Information System (INIS)

    Anwar, M.W.; Abid, I.

    2012-01-01

    Objective: To compare the diagnostic accuracy of Total Leucocytes Count (TLC) with Neutrophil count; Differential Leucocytes Count (DLC) in diagnosing cases of suspected acute appendicitis. Study design: Validation study. Place and duration of the study: Department of Surgery, Combined Military Hospital (CMH) Rawalpindi, from April 2008 to October 2008. Method: A total of 100 patients of Pain right iliac fossae who underwent appendicectomy were included. Detailed history of all the patients was taken for pain in right lower abdomen, its severity, its nature, relieving or provoking factors. Clinical examination was done in detail. Total and Differential Leucocytes Count was done. Every patient's appendix was examined grossly after appendicectomy for evidence of appendicitis. Diagnostic measures of TLC and DLC were calculated by standard formulas. Results: Sensitivity and specificity of TLC is 86.9% and 81.25% respectively and that of DLC is 82% and 68.75% respectively. Accuracy was 86% for TLC and 80% for DLC. Conclusion: TLC is more sensitive, specific and accurate test as compared to DLC and it should be used as diagnostic aid for suspected acute appendicitis cases. (author)

  4. Survey of Leafhopper Species in Almond Orchards Infected with Almond Witches'-Broom Phytoplasma in Lebanon

    Science.gov (United States)

    Hammad, Efat Abou-Fakhr; El-Mohtar, Choaa; Abou-Jawdah, Yusuf

    2011-01-01

    Leafhoppers (Hemiptera: Auchenorrhyncha: Cicadellidae) account for more than 80% of all “Auchenorrhynchous” vectors that transmit phytoplasmas. The leafhopper populations in two almond witches'-broom phytoplasma (AlmWB) infected sites: Tanboureet (south of Lebanon) and Bourj El Yahoudieh (north of Lebanon) were surveyed using yellow sticky traps. The survey revealed that the most abundant species was Asymmetrasca decedens, which represented 82.4% of all the leafhoppers sampled. Potential phytoplasma vectors in members of the subfamilies Aphrodinae, Deltocephalinae, and Megophthalminae were present in very low numbers including: Aphrodes makarovi, Cicadulina bipunctella, Euscelidius mundus, Fieberiella macchiae, Allygus theryi, Circulifer haematoceps, Neoaliturus transversalis, and Megophthalmus scabripennis. Allygus theryi (Horváth) (Deltocephalinae) was reported for the first time in Lebanon. Nested PCR analysis and sequencing showed that Asymmetrasca decedens, Empoasca decipiens, Fieberiella macchiae, Euscelidius mundus, Thamnottetix seclusis, Balclutha sp., Lylatina inexpectata, Allygus sp., and Annoplotettix danutae were nine potential carriers of AlmWB phytoplasma. Although the detection of phytoplasmas in an insect does not prove a definite vector relationship, the technique is useful in narrowing the search for potential vectors. The importance of this information for management of AlmWB is discussed. PMID:21864154

  5. Digital Survey Meter based on PIC16F628 Microcontroller

    International Nuclear Information System (INIS)

    Al-Mohamad, A.; Shliwitt, J.

    2010-01-01

    A Digital Survey Meter based on PIC16F628 Microcontroller was designed using simple Geiger-Muller Counter ZP1320 made by Centronic in the UK as detector. The sensitivity of this tube is about 9 counts/s at 10μGy/h. It is sensitive to gamma and beta particles over 0.25 MeV. It has a sensitive length of 28mm. Count rate versus dose rate is quite linear up to about 10 4 counts/s. Indication is given by a speaker which emits one click for each count. In addition to the acoustic alarm, the meter works according one of three different measurement modes selected using appropriate 3 states switch: 1- Measurement of Dose rate ( in μGy/h) and counting rate ( in CPS) , for High counting rates. 2- Measurement of Dose rate ( in μGy/h) and counting rate ( in CPM), for Low counting rates. 3- Accumulated Counting with continues display for No. of Counts and Counting Time with a period of 2 Sec. The results are Displayed on an Alphanumerical LCD Display, and the circuit will give many hours of operation from a single 9V PP3 battery. The design of the circuit combines between accuracy, simplicity and low power consumption. We built 2 Models of this design, the first only with an internal detector, and the second is equipped with an External Detector. (author)

  6. The formation of pollen in male flowers and yearly atmospheric pollen counts of Cryptomeria japonica in the following year

    Directory of Open Access Journals (Sweden)

    Hideaki Taira

    1998-01-01

    Full Text Available Prediction of yearly atmospheric pollen counts is a very important component in the prevention of allergenic symptoms. We investigated the relationship between atomspheric pollen counts and the formation of male flowers of Cryptomeriajaponica D. Don (C. japonica. An atmospheric pollen survey of C. japonica was conducted from 1983 to 1996 using a Durham’s sampler. A regression analysis was performed between the total pollen count and July temperature in previous years. The atmospheric pollen counts of C. japonica had a high positive correlation with the mean temperature in July of the previous year. However, the predicted using average mean July temperature records of the previous year were insufficient, especially in years following high pollen count. In experimental conditions, using 60 C. japonica trees in pots, the formation of male flowers was shown to increase with a rise in incubation temperature. In a forest of C. japonica, our results showed that the length and weight of new needle growth from old needles, which produced many flowers in the previous year, were shorter and lighter, respectively. These aerobiological and plant physiological studies provide evidence that a smaller number of pollen counts are a common result in a year following one in which many male flowers are produced, even if the mean July temperature of that year was high.

  7. Enhanced counting efficiency of Cerenkov radiation from bismuth-210

    International Nuclear Information System (INIS)

    Peck, G.A.; Smith, J.D.

    1998-01-01

    This paper describes the measurement of 210 Bi by Cerenkov counting in a commercial liquid scintillation counter. The counting efficiency in water is 0.17 counts per second per Becquerel (17%). When the enhancers Triton X-100 (15% v/v) and sodium salicylate (1% m/v) are added to the solution the counting efficiency for 210 Bi increases from 17% to 75%. The 210 Po daughter of 210 Bi causes interference of 0.85 counts per second per Becquerel in the presence of the enhancers but not in water. When 210 Bi and 210 Po are present in secular equilibrium the total counting efficiency is 160%. When 210 Bi and 210 Po are not in secular equilibrium the 210 Po can be removed immediately before counting by plating onto silver foil. The use of the enhancers gives a substantial increase in counting efficiency compared to counting in water. Compared with solutions used in liquid scintillation counting the enhancer solution is inexpensive and can be disposed of without environmental hazard. (author)

  8. A comparison of point counts with a new acoustic sampling method: a case study of a bird community from the montane forests of Mount Cameroon

    Czech Academy of Sciences Publication Activity Database

    Sedláček, O.; Vokurková, J.; Ferenc, M.; Djomo Nana, E.; Albrecht, Tomáš; Hořák, D.

    2015-01-01

    Roč. 86, č. 3 (2015), s. 213-220 ISSN 0030-6525 R&D Projects: GA ČR(CZ) GAP505/11/1617 Institutional support: RVO:68081766 Keywords : abundance * automatic recording units * montane forest * point count * species richness * species turnover Subject RIV: EG - Zoology Impact factor: 0.418, year: 2015

  9. Clean Hands Count

    Medline Plus

    Full Text Available ... why Close Clean Hands Count Centers for Disease Control and Prevention (CDC) Loading... Unsubscribe from Centers for Disease Control and Prevention (CDC)? Cancel Unsubscribe Working... Subscribe Subscribed ...

  10. Design and development of multiple sample counting setup

    International Nuclear Information System (INIS)

    Rath, D.P.; Murali, S.; Babu, D.A.R.

    2010-01-01

    Full text: The analysis of active samples on regular basis for ambient air activity and floor contamination from radio chemical lab accounts for major chunk of the operational activity in Health Physicist's responsibility. The requirement for daily air sample analysis on immediate counting and delayed counting from various labs in addition to samples of smear swipe check of lab led to the urge for development of system that could cater multiple sample analysis in a time programmed manner on a single sample loading. A multiple alpha/beta counting system for counting was designed and fabricated. It has arrangements for loading 10 samples in slots in order, get counted in a time programmed manner with results displayed and records maintained in PC. The paper describes the design and development of multiple sample counting setup presently in use at the facility has resulted in reduction of man-hour consumption in counting and recording of the results

  11. Automated vehicle counting using image processing and machine learning

    Science.gov (United States)

    Meany, Sean; Eskew, Edward; Martinez-Castro, Rosana; Jang, Shinae

    2017-04-01

    Vehicle counting is used by the government to improve roadways and the flow of traffic, and by private businesses for purposes such as determining the value of locating a new store in an area. A vehicle count can be performed manually or automatically. Manual counting requires an individual to be on-site and tally the traffic electronically or by hand. However, this can lead to miscounts due to factors such as human error A common form of automatic counting involves pneumatic tubes, but pneumatic tubes disrupt traffic during installation and removal, and can be damaged by passing vehicles. Vehicle counting can also be performed via the use of a camera at the count site recording video of the traffic, with counting being performed manually post-recording or using automatic algorithms. This paper presents a low-cost procedure to perform automatic vehicle counting using remote video cameras with an automatic counting algorithm. The procedure would utilize a Raspberry Pi micro-computer to detect when a car is in a lane, and generate an accurate count of vehicle movements. The method utilized in this paper would use background subtraction to process the images and a machine learning algorithm to provide the count. This method avoids fatigue issues that are encountered in manual video counting and prevents the disruption of roadways that occurs when installing pneumatic tubes

  12. Ethnobotanical survey of tree species used for wound healing in ...

    African Journals Online (AJOL)

    Seventy-one plants out of which sixty-five were tree species belonging to thirty angiosperm families were identified as plant species used for the treatment of wound and related skin disorders. Some of the most frequently used tree species mentioned by the respondents are: Khaya grandifoliola C. D. C., Vitellaria paradoxa ...

  13. Calculating concentration of inhaled radiolabeled particles from external gamma counting: External counting efficiency and attenuation coefficient of thorax

    International Nuclear Information System (INIS)

    Langenback, E.G.; Foster, W.M.; Bergofsky, E.H.

    1989-01-01

    We determined the overall external counting efficiency of radiolabeled particles deposited in the sheep lung. This efficiency permits the noninvasive calculation of the number of particles and microcuries from gamma-scintillation lung images of the live sheep. Additionally, we have calculated the attenuation of gamma radiation (120 keV) by the posterior chest wall and the gamma-scintillation camera collection efficiency of radiation emitted from the lung. Four methods were employed in our experiments: (1) by light microscopic counting of discrete carbonized polystyrene particles with a count median diameter (CMD) of 2.85 microns and tagged with cobalt-57, we delineated a linear relationship between the number of particles and the emitted counts per minute (cpm) detected by well scintillation counting; (2) from this conversion relationship we determined the number of particles inhaled and deposited in the lungs by scintillation counting fragments of dissected lung at autopsy; (3) we defined a linear association between the number of particles or microcuries contained in the lung and the emitted radiation as cpm detected by a gamma scintillation camera in the live sheep prior to autopsy; and (4) we compared the emitted radiation from the lungs of the live sheep to that of whole excised lungs in order to calculate the attenuation coefficient (ac) of the chest wall. The mean external counting efficiency was 4.00 X 10(4) particles/cpm (5.1 X 10(-3) microCi/cpm), the camera collection efficiency was 1 cpm/10(4) disintegrations per minute (dpm), and the ac had a mean of 0.178/cm. The external counting efficiency remained relatively constant over a range of particles and microcuries, permitting a more general use of this ratio to estimate number of particles or microcuries depositing after inhalation in a large mammalian lung if a similarly collimated gamma camera system is used

  14. Clean Hands Count

    Medline Plus

    Full Text Available ... Clean Hands Count Centers for Disease Control and Prevention (CDC) Loading... Unsubscribe from Centers for Disease Control and Prevention (CDC)? Cancel Unsubscribe Working... Subscribe Subscribed Unsubscribe 65K ...

  15. Clean Hands Count

    Medline Plus

    Full Text Available ... Clean Hands Count Centers for Disease Control and Prevention (CDC) Loading... Unsubscribe from Centers for Disease Control and Prevention (CDC)? Cancel Unsubscribe Working... Subscribe Subscribed Unsubscribe 66K ...

  16. Intertidal Species Inventory and Quantitative Data Collected on Oahu and Maui during 2001-2005 (NODC Accession 0002447)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Two types of data sets generated by our project: species inventories and quantitative counts of key organisms. The species inventories are a compilation of data...

  17. A survey of ichthyofauna of Lake Kanyaboli and other small waterbodies in Kenya: alternative refugia for endangered fish species

    OpenAIRE

    Maithya, J.

    1998-01-01

    In 1988, the World Conservation Union (WCU) Red Book of Endangered Species listed hundreds of endemic fishes of Lake Victoria under a single heading - "ENDANGERED". Most of the endemic native food fishes are either endangered or extinct. However, a survey of the fauna of Lake Kanyaboli, revealed that a few remaining samples of these native fishes are actually thriving. These include several unidentified Haplochromis spp., Oreochromis esculentus and Oreochromis variabilis. As a resul...

  18. Algorithm for counting large directed loops

    Energy Technology Data Exchange (ETDEWEB)

    Bianconi, Ginestra [Abdus Salam International Center for Theoretical Physics, Strada Costiera 11, 34014 Trieste (Italy); Gulbahce, Natali [Theoretical Division and Center for Nonlinear Studies, Los Alamos National Laboratory, NM 87545 (United States)

    2008-06-06

    We derive a Belief-Propagation algorithm for counting large loops in a directed network. We evaluate the distribution of the number of small loops in a directed random network with given degree sequence. We apply the algorithm to a few characteristic directed networks of various network sizes and loop structures and compare the algorithm with exhaustive counting results when possible. The algorithm is adequate in estimating loop counts for large directed networks and can be used to compare the loop structure of directed networks and their randomized counterparts.

  19. Ethnopharmacological survey of plant species used in folk medicine against central nervous system disorders in Togo.

    Science.gov (United States)

    Kantati, Yendube T; Kodjo, K Magloire; Dogbeavou, Koffi S; Vaudry, David; Leprince, Jérôme; Gbeassor, Messanvi

    2016-04-02

    Neurological diseases are rising all around the world. In a developing country such as Togo, although plant-based medicines are the only means, still very little is known regarding the nature and efficiency of medicinal plants used by indigenous people to manage central nervous system (CNS) disorders. This study, an ethnobotanical survey, aimed to report plant species used in traditional medicine (TM) for the management of various CNS disorders in Togo. 52 traditional actors (TA) including 33 traditional healers (TH) and 19 medicinal plant sellers (MPS) were interviewed, using a questionnaire mentioning informants' general data and uses of medicinal plants. The present study reports 44 medicinal plant species distributed into 26 families, mentioning scientific and common local names, plant organs used, preparation method, root of administration and putative applications. It appears that there is a real knowledge on medicinal plants used for traditional treatment of CNS disorders in Togo and that the local flora abounds of potentially neuroactive plants which could be useful for the discovery of antipsychotic or neuroprotective molecules. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

  20. Logistic regression for dichotomized counts.

    Science.gov (United States)

    Preisser, John S; Das, Kalyan; Benecha, Habtamu; Stamm, John W

    2016-12-01

    Sometimes there is interest in a dichotomized outcome indicating whether a count variable is positive or zero. Under this scenario, the application of ordinary logistic regression may result in efficiency loss, which is quantifiable under an assumed model for the counts. In such situations, a shared-parameter hurdle model is investigated for more efficient estimation of regression parameters relating to overall effects of covariates on the dichotomous outcome, while handling count data with many zeroes. One model part provides a logistic regression containing marginal log odds ratio effects of primary interest, while an ancillary model part describes the mean count of a Poisson or negative binomial process in terms of nuisance regression parameters. Asymptotic efficiency of the logistic model parameter estimators of the two-part models is evaluated with respect to ordinary logistic regression. Simulations are used to assess the properties of the models with respect to power and Type I error, the latter investigated under both misspecified and correctly specified models. The methods are applied to data from a randomized clinical trial of three toothpaste formulations to prevent incident dental caries in a large population of Scottish schoolchildren. © The Author(s) 2014.

  1. Housing Inventory Count

    Data.gov (United States)

    Department of Housing and Urban Development — This report displays the data communities reported to HUD about the nature of their dedicated homeless inventory, referred to as their Housing Inventory Count (HIC)....

  2. An aerial radiological survey of Areas 12, 15, 17 and 19, Nevada Test Site: Date of survey: October-November 1984

    International Nuclear Information System (INIS)

    Jobst, J.E.

    1986-10-01

    Airborne measurements were obtained over Areas 12, 15, 17, and 19. The data were used to obtain gross count and cesium-137 spatial distribution maps. The survey results are expressed as exposure rate isopleths and cesium-137 concentrations, superimposed on NTS maps. 11 refs., 20 figs

  3. Occurrence and identification of yeast species in fermented liquid feed for piglets

    DEFF Research Database (Denmark)

    Gori, Klaus; Bjørklund, Marina Kryger; Canibe, Nuria

    2011-01-01

    The major objective of the present study was to investigate the occurrence and identity of yeast species in fermented liquid feed (FLF) used for feeding piglets. In total, 40 different Danish farms were included in the analysis. The preparation and composition of FLF was found to be very...... heterogeneous with high variations in both yeast counts and yeast species composition. The yeast population varied between 6.0 × 10(3) and 4.2 × 10(7) cfug(-1) with an average yeast count of 8.7 × 10(6) ± 1.1 × 10(7) cfug(-1). A total of 766 yeasts were isolated and identified by conventional and/or molecular...... typing techniques. The predominant yeast species in the FLF samples were found to be Candida milleri (58.4%), Kazachstania exigua (17.5%), Candida pararugosa (6.40%) and Kazachstania bulderi (5.09%). No clear separation between isolates of C. milleri and Candida humilis could be obtained based...

  4. Multiple-Event, Single-Photon Counting Imaging Sensor

    Science.gov (United States)

    Zheng, Xinyu; Cunningham, Thomas J.; Sun, Chao; Wang, Kang L.

    2011-01-01

    The single-photon counting imaging sensor is typically an array of silicon Geiger-mode avalanche photodiodes that are monolithically integrated with CMOS (complementary metal oxide semiconductor) readout, signal processing, and addressing circuits located in each pixel and the peripheral area of the chip. The major problem is its single-event method for photon count number registration. A single-event single-photon counting imaging array only allows registration of up to one photon count in each of its pixels during a frame time, i.e., the interval between two successive pixel reset operations. Since the frame time can t be too short, this will lead to very low dynamic range and make the sensor merely useful for very low flux environments. The second problem of the prior technique is a limited fill factor resulting from consumption of chip area by the monolithically integrated CMOS readout in pixels. The resulting low photon collection efficiency will substantially ruin any benefit gained from the very sensitive single-photon counting detection. The single-photon counting imaging sensor developed in this work has a novel multiple-event architecture, which allows each of its pixels to register as more than one million (or more) photon-counting events during a frame time. Because of a consequently boosted dynamic range, the imaging array of the invention is capable of performing single-photon counting under ultra-low light through high-flux environments. On the other hand, since the multiple-event architecture is implemented in a hybrid structure, back-illumination and close-to-unity fill factor can be realized, and maximized quantum efficiency can also be achieved in the detector array.

  5. A hierarchical spatial model of avian abundance with application to Cerulean Warblers

    Science.gov (United States)

    Thogmartin, Wayne E.; Sauer, John R.; Knutson, Melinda G.

    2004-01-01

    Surveys collecting count data are the primary means by which abundance is indexed for birds. These counts are confounded, however, by nuisance effects including observer effects and spatial correlation between counts. Current methods poorly accommodate both observer and spatial effects because modeling these spatially autocorrelated counts within a hierarchical framework is not practical using standard statistical approaches. We propose a Bayesian approach to this problem and provide as an example of its implementation a spatial model of predicted abundance for the Cerulean Warbler (Dendroica cerulea) in the Prairie-Hardwood Transition of the upper midwestern United States. We used an overdispersed Poisson regression with fixed and random effects, fitted by Markov chain Monte Carlo methods. We used 21 years of North American Breeding Bird Survey counts as the response in a loglinear function of explanatory variables describing habitat, spatial relatedness, year effects, and observer effects. The model included a conditional autoregressive term representing potential correlation between adjacent route counts. Categories of explanatory habitat variables in the model included land cover composition and configuration, climate, terrain heterogeneity, and human influence. The inherent hierarchy in the model was from counts occurring, in part, as a function of observers within survey routes within years. We found that the percentage of forested wetlands, an index of wetness potential, and an interaction between mean annual precipitation and deciduous forest patch size best described Cerulean Warbler abundance. Based on a map of relative abundance derived from the posterior parameter estimates, we estimated that only 15% of the species' population occurred on federal land, necessitating active engagement of public landowners and state agencies in the conservation of the breeding habitat for this species. Models of this type can be applied to any data in which the response

  6. Detectability counts when assessing populations for biodiversity targets.

    Directory of Open Access Journals (Sweden)

    Silviu O Petrovan

    Full Text Available Efficient, practical and accurate estimates of population parameters are a necessary basis for effective conservation action to meet biodiversity targets. The brown hare is representative of many European farmland species: historically widespread and abundant but having undergone rapid declines as a result of agricultural intensification. As a priority species in the UK Biodiversity Action Plan, it has national targets for population increase that are part of wider national environmental indicators. Previous research has indicated that brown hare declines have been greatest in pastural landscapes and that gains might be made by focussing conservation effort there. We therefore used hares in pastural landscapes to examine how basic changes in survey methodology can affect the precision of population density estimates and related these to national targets for biodiversity conservation in the UK. Line transects for hares carried out at night resulted in higher numbers of detections, had better-fitting detection functions and provided more robust density estimates with lower effort than those during the day, due primarily to the increased probability of detection of hares at night and the nature of hare responses to the observer. Hare spring densities varied widely within a single region, with a pooled mean of 20.6 hares km(-2, significantly higher than the reported national average of hares in pastures of 3.3 hares km(-2. The high number of encounters allowed us to resolve hare densities at site, season and year scales. We demonstrate how survey conduct can impact on data quantity and quality with implications for setting and monitoring biodiversity targets. Our case study of the brown hare provides evidence that for wildlife species with low detectability, large scale volunteer-based monitoring programmes, either species specific or generalist, might be more successfully and efficiently carried out by a small number of trained personnel able to

  7. Lazy reference counting for the Microgrid

    NARCIS (Netherlands)

    Poss, R.; Grelck, C.; Herhut, S.; Scholz, S.-B.

    2012-01-01

    This papers revisits non-deferred reference counting, a common technique to ensure that potentially shared large heap objects can be reused safely when they are both input and output to computations. Traditionally, thread-safe reference counting exploit implicit memory-based communication of counter

  8. Arduino based radiation survey meter

    Energy Technology Data Exchange (ETDEWEB)

    Rahman, Nur Aira Abd, E-mail: nur-aira@nm.gov.my; Lombigit, Lojius; Abdullah, Nor Arymaswati; Azman, Azraf; Dolah, Taufik; Jaafar, Zainudin; Mohamad, Glam Hadzir Patai; Ramli, Abd Aziz Mhd; Zain, Rasif Mohd; Said, Fazila; Khalid, Mohd Ashhar; Taat, Muhamad Zahidee [Malaysian Nuclear Agency, 43000, Bangi, Selangor (Malaysia); Muzakkir, Amir [Sinaran Utama Teknologi Sdn Bhd, 43650, Bandar Baru Bangi, Selangor (Malaysia)

    2016-01-22

    This paper presents the design of new digital radiation survey meter with LND7121 Geiger Muller tube detector and Atmega328P microcontroller. Development of the survey meter prototype is carried out on Arduino Uno platform. 16-bit Timer1 on the microcontroller is utilized as external pulse counter to produce count per second or CPS measurement. Conversion from CPS to dose rate technique is also performed by Arduino to display results in micro Sievert per hour (μSvhr{sup −1}). Conversion factor (CF) value for conversion of CPM to μSvhr{sup −1} determined from manufacturer data sheet is compared with CF obtained from calibration procedure. The survey meter measurement results are found to be linear for dose rates below 3500 µSv/hr.

  9. Clean Hands Count

    Medline Plus

    Full Text Available ... stop Loading... Watch Queue Queue __count__/__total__ It’s YouTube. Uninterrupted. Loading... Want music and videos with zero ads? Get YouTube Red. Working... Not now Try it free Find ...

  10. An analytical framework for estimating aquatic species density from environmental DNA

    Science.gov (United States)

    Chambert, Thierry; Pilliod, David S.; Goldberg, Caren S.; Doi, Hideyuki; Takahara, Teruhiko

    2018-01-01

    Environmental DNA (eDNA) analysis of water samples is on the brink of becoming a standard monitoring method for aquatic species. This method has improved detection rates over conventional survey methods and thus has demonstrated effectiveness for estimation of site occupancy and species distribution. The frontier of eDNA applications, however, is to infer species density. Building upon previous studies, we present and assess a modeling approach that aims at inferring animal density from eDNA. The modeling combines eDNA and animal count data from a subset of sites to estimate species density (and associated uncertainties) at other sites where only eDNA data are available. As a proof of concept, we first perform a cross-validation study using experimental data on carp in mesocosms. In these data, fish densities are known without error, which allows us to test the performance of the method with known data. We then evaluate the model using field data from a study on a stream salamander species to assess the potential of this method to work in natural settings, where density can never be known with absolute certainty. Two alternative distributions (Normal and Negative Binomial) to model variability in eDNA concentration data are assessed. Assessment based on the proof of concept data (carp) revealed that the Negative Binomial model provided much more accurate estimates than the model based on a Normal distribution, likely because eDNA data tend to be overdispersed. Greater imprecision was found when we applied the method to the field data, but the Negative Binomial model still provided useful density estimates. We call for further model development in this direction, as well as further research targeted at sampling design optimization. It will be important to assess these approaches on a broad range of study systems.

  11. Preverbal and verbal counting and computation.

    Science.gov (United States)

    Gallistel, C R; Gelman, R

    1992-08-01

    We describe the preverbal system of counting and arithmetic reasoning revealed by experiments on numerical representations in animals. In this system, numerosities are represented by magnitudes, which are rapidly but inaccurately generated by the Meck and Church (1983) preverbal counting mechanism. We suggest the following. (1) The preverbal counting mechanism is the source of the implicit principles that guide the acquisition of verbal counting. (2) The preverbal system of arithmetic computation provides the framework for the assimilation of the verbal system. (3) Learning to count involves, in part, learning a mapping from the preverbal numerical magnitudes to the verbal and written number symbols and the inverse mappings from these symbols to the preverbal magnitudes. (4) Subitizing is the use of the preverbal counting process and the mapping from the resulting magnitudes to number words in order to generate rapidly the number words for small numerosities. (5) The retrieval of the number facts, which plays a central role in verbal computation, is mediated via the inverse mappings from verbal and written numbers to the preverbal magnitudes and the use of these magnitudes to find the appropriate cells in tabular arrangements of the answers. (6) This model of the fact retrieval process accounts for the salient features of the reaction time differences and error patterns revealed by experiments on mental arithmetic. (7) The application of verbal and written computational algorithms goes on in parallel with, and is to some extent guided by, preverbal computations, both in the child and in the adult.

  12. Determining Gate Count Reliability in a Library Setting

    OpenAIRE

    Jeffrey Phillips

    2016-01-01

    Objective – Patron counts are a common form of measurement for library assessment. To develop accurate library statistics, it is necessary to determine any differences between various counting devices. A yearlong comparison between card reader turnstiles and laser gate counters in a university library sought to offer a standard percentage of variance and provide suggestions to increase the precision of counts. Methods – The collection of library exit counts identified the differences be...

  13. Counting Word Frequencies with Python

    Directory of Open Access Journals (Sweden)

    William J. Turkel

    2012-07-01

    Full Text Available Your list is now clean enough that you can begin analyzing its contents in meaningful ways. Counting the frequency of specific words in the list can provide illustrative data. Python has an easy way to count frequencies, but it requires the use of a new type of variable: the dictionary. Before you begin working with a dictionary, consider the processes used to calculate frequencies in a list.

  14. A microprocessor based mobile radiation survey system

    International Nuclear Information System (INIS)

    Gilbert, R.W.; McCormack, W.D.

    1984-01-01

    A microprocessor-based system has been designed and constructed to enhance the performance of routine radiation surveys on roads within the Hanford site. This device continually monitors system performance and output from four sodium iodide detectors mounted on the rear bumper of a 4-wheel drive truck. The gamma radiation count rate in counts-per-second is monitored, and a running average computed, with the results compared to predefined limits. If an abnormal instantaneous or average count rate is detected, an alarm is sounded with responsible data displayed on a liquid crystal panel in the cab of the vehicle. The system also has the capability to evaluate detector output using multiple time constants and to perform more complex tests and comparison of the data. Data can be archived for later analysis on conventional chart recorders or stored in digital form on magnetic tape or other digital storage media

  15. Computerized radioautographic grain counting

    International Nuclear Information System (INIS)

    McKanna, J.A.; Casagrande, V.A.

    1985-01-01

    In recent years, radiolabeling techniques have become fundamental assays in physiology and biochemistry experiments. They also have assumed increasingly important roles in morphologic studies. Characteristically, radioautographic analysis of structure has been qualitative rather than quantitative, however, microcomputers have opened the door to several methods for quantifying grain counts and density. The overall goal of this chapter is to describe grain counting using the Bioquant, an image analysis package based originally on the Apple II+, and now available for several popular microcomputers. The authors discuss their image analysis procedures by applying them to a study of development in the central nervous system

  16. A dataset from bottom trawl survey around Taiwan

    Directory of Open Access Journals (Sweden)

    Kwang-tsao Shao

    2012-05-01

    Full Text Available Bottom trawl fishery is one of the most important coastal fisheries in Taiwan both in production and economic values. However, its annual production started to decline due to overfishing since the 1980s. Its bycatch problem also damages the fishery resource seriously. Thus, the government banned the bottom fishery within 3 nautical miles along the shoreline in 1989. To evaluate the effectiveness of this policy, a four year survey was conducted from 2000–2003, in the waters around Taiwan and Penghu (Pescadore Islands, one region each year respectively. All fish specimens collected from trawling were brought back to lab for identification, individual number count and body weight measurement. These raw data have been integrated and established in Taiwan Fish Database (http://fishdb.sinica.edu.tw. They have also been published through TaiBIF (http://taibif.tw, FishBase and GBIF (website see below. This dataset contains 631 fish species and 3,529 records, making it the most complete demersal fish fauna and their temporal and spatial distributional data on the soft marine habitat in Taiwan.

  17. Cerenkov counting and Cerenkov-scintillation counting with high refractive index organic liquids using a liquid scintillation counter

    International Nuclear Information System (INIS)

    Wiebe, L.I.; Helus, F.; Maier-Borst, W.

    1978-01-01

    18 F and 14 C radioactivity was measured in methyl salicylate (MS), a high refractive index hybrid Cherenkov-scintillation generating medium, using a liquid scintillation counter. At concentrations of up to 21.4%, in MS, dimethyl sulfoxide (DMSO) quenched 14 C fluorescence, and with a 10-fold excess of DMSO over MS, 18 F count rates were reduced below that for DMSO alone, probably as a result of concentration-independent self-quenching due to 'dark-complex' formation. DMSO in lower concentrations did not reduce the counting efficiency of 18 F in MS. Nitrobenzene was a concentration-dependent quencher for both 14 C and 18 F in MS. Chlorobenzene (CB) and DMSO were both found to be weak Cherenkov generators with 18 F. Counting efficiencies for 18 F in MS, CB, and DMSO were 50.3, 7.8 and 4.3% respectively in the coincidence counting mode, and 58.1, 13.0 and 6.8% in the singles mode. 14 C efficiencies were 14.4 and 22.3% for coincidence and singles respectively, and 15.3 and 42.0% using a modern counter designed for coincidence and single photon counting. The high 14 C and 18 F counting efficiency in MS are discussed with respect to excitation mechanism, on the basis of quench and channels ratios changes observed. It is proposed that MS functions as an efficient Cherenkov-scintillation generator for high-energy beta emitters such as 18 F, and as a low-efficiency scintillator for weak beta emitting radionuclides such as 14 C. (author)

  18. Relationship between salivary flow rates and Candida albicans counts.

    Science.gov (United States)

    Navazesh, M; Wood, G J; Brightman, V J

    1995-09-01

    Seventy-one persons (48 women, 23 men; mean age, 51.76 years) were evaluated for salivary flow rates and Candida albicans counts. Each person was seen on three different occasions. Samples of unstimulated whole, chewing-stimulated whole, acid-stimulated parotid, and candy-stimulated parotid saliva were collected under standardized conditions. An oral rinse was also obtained and evaluated for Candida albicans counts. Unstimulated and chewing-stimulated whole flow rates were negatively and significantly (p Candida counts. Unstimulated whole saliva significantly (p Candida counts of 0 versus or = 500 count. Differences in stimulated parotid flow rates were not significant among different levels of Candida counts. The results of this study reveal that whole saliva is a better predictor than parotid saliva in identification of persons with high Candida albicans counts.

  19. Eurajoki Olkiluoto birdlife survey 2008

    International Nuclear Information System (INIS)

    Yrjoelae, R.

    2009-02-01

    The study of birds in Olkiluoto in the summer of 2008 repeated the study of the same area conducted in 1997 (Yrjoelae 1997), and was complemented with two new line transect routes and six new waterfowl counting points for the eastern region of the Olkiluoto island. Using this method the research project covered the whole area of the Olkiluoto island. By repeating the earlier routes and counting points it presented an opportunity to clarify any possible changes in the area. A wide variety of different biotypes are evident in the mixed-growth forests of the whole Olkiluoto island and after that are both spruce and pine forests. There are regionally, however, great differences in the division. In the western sector of the island, on the first three lines, the share of industrial areas and the road network are noticeable. The methods used were line transects for the bird species found on the ground and point checks for the aquatic species of birds (Koskimies and Vaeisaenen 1998), which are the established methods used for the monitoring of birdlife in Finland. In these calculations, the bird observations were 1429 altogether, covering 65 species. The results of the checkpoint census for waterfowl are presented in this study. Altogether, 23 species were interpreted in the census for waterfowl as pairs appearing to nest in the area of the checkpoints. The endangered, or other species mentioned in the EU bird directive, sighted in Olkiluoto in summer 2008 are listed in this study. The Redbacked Shrike and Common Chiffchaff were clearly the most common among these species. The birdlife in Olkiluoto is both rather varied and abundant. A few clear tendencies can be distinguished in the changes within the species of birds. Amongst the waterfowl and gulls, the species favouring flourishing watercourses have increased. The species in the outer archipelago, such as the Common Eider and Velvet Scoter have declined compared to 1997. Probably the waders of the archipelago will

  20. On the errors in measurements of Ohio 5 radio sources in the light of the GB survey

    International Nuclear Information System (INIS)

    Machalski, J.

    1975-01-01

    Positions and flux densities of 405 OSU 5 radio sources surveyed at 1415 MHz down to 0.18 f.u. (Brundage et al. 1971) have been examined in the light of data from the GB survey made at 1400 MHz (Maslowski 1972). An identification analysis has shown that about 56% of OSU sources reveal themselves as single, 18% - as confused, 20% - as unresolved and 6% - having no counterparts in the GB survey down to 0.09 f.u. - seem to be spurious. The single OSU sources are strongly affected by the underestimation of their flux densities due to base-line procedure in their vicinity. The average value of about 0.03 f.u. has been found for the systematic underestimation. The second systematic error is due to the presence of a significant number of confused sources with strong overestimation of their flux densities. The confusion effect gives a characteristic non-Gaussian tail in the difference distribution between observed and real flux densities. The confusion effect has a strong influence on source counts from the OSU 5 survey. Differential number-counts relatively to that from the GB survey shows that the counts agree between themselves within the statistical uncertainty up to about 0.40 f.u., which is approximately 4 delta (delta - average rms flux density error in the OSU 5 survey). Below 0.40 f.u. the number of sources missing due to the confusion effect is significantly greater than the number-overestimation due to the noise error. Thus, this part of the OSU 5 source counts cannot be treated seriously, even in the statistical sense. An analysis of the approximate reliability and completeness of the OSU 5 survey shows that, although the total reliability estimated by the authors of the survey is good, the completeness is significantly lower due to the underestimation of the confusion effect magnitude. In fact, the OSU 5 completeness is 67% at 0.18 f.u. and 79% at 0.25 f.u. (author)

  1. Baseline survey for rare plant species and native plant communities within the Kamehameha Schools 'Lupea Safe Harbor Planning Project Area, North Kona District, Island of Hawai'i

    Science.gov (United States)

    Jacobi, James; Warshauer, F. R.; Price, Jonathan

    2010-01-01

    Kamehameha Schools, in conjunction with several federal, state, and private organizations, has proposed to conduct conservation management on approximately 5,340 ha (~13,200 acres) of land they own in the vicinity of Kīpukalupea in the North Kona District on the island of Hawai'i. The goal of this program is to restore and enhance the habitat to benefit native plant and animal populations that are currently, or were formerly, found in this site. The initial phase of this project has been focused on various activities including conducting baseline surveys for bird and plant species so Kamehameha Schools could develop a Safe Harbor Agreement (SHA) for the proposed project lands relative to the habitat management and species reintroduction efforts they would like to conduct in the Lupea Project area. This report summarizes methods that were used to collect field data on plant species and communities within the project area, and the results of that initial survey. The information was used to calculate baseline values for all listed threatened or endangered plant species found, or expected to be found, within the project area, and to design a monitoring program to assess changes in plant communities and rare plant species relative to management activities over the duration of the SHA.

  2. Reticulocyte Count Test

    Science.gov (United States)

    ... htm. (2004 Summer). Immature Reticulocyte Fraction(IRF). The Pathology Center Newsletter v9(1). [On-line information]. Available ... Company, Philadelphia, PA [18th Edition]. Levin, M. (2007 March 8, Updated). Reticulocyte Count. MedlinePlus Medical Encyclopedia [On- ...

  3. A new species of wedgefish Rhynchobatus cooki (Rhinopristiformes, Rhinidae) from the Indo-West Pacific.

    Science.gov (United States)

    Last, Peter R; Kyne, Peter M; Compagno, Leonard J V

    2016-07-20

    A new dwarf wedgefish, Rhynchobatus cooki sp. nov. is described from a single female from a Jakarta fish market (Indonesia) and 11 specimens collected at Jurong fish market (Singapore). First collected in 1934, the broader ichthyological community have been aware of this distinctive but little known ray since the late 1990's. Rhynchobatus cooki is the smallest of the wedgefishes (to 81 cm TL) and has the lowest vertebral count (fewer than 107 centra). It is also distinguishable from its congeners based on its long, hastate snout, very strongly undulate anterior pectoral-fin margin, coloration and aspects of its squamation. The dorsal coloration is mainly dark and distinctively marked with white blotches, spots and streaks, and has a dark cruciate marking on the interorbit and a prominent white border around the body margin. Unlike most other wedgefish species, the snout tip lacks dark blotches and there is no black pectoral-fin marking. It shares well-developed rostral spines with a much larger Atlantic species (Rhynchobatus luebberti), but these spines are confined to the snout tip (rather than being more numerous and extending in paired rows along the rostral ridges nearly to the eyes). No additional specimens have been observed since 1996, despite an increased recent effort to survey the chondrichthyan fauna of South-East Asia and collect biological data for species, raising concerns over its conservation status.

  4. Counting radon tracks in Makrofol detectors with the 'image reduction and analysis facility' (IRAF) software package

    International Nuclear Information System (INIS)

    Hernandez, F.; Gonzalez-Manrique, S.; Karlsson, L.; Hernandez-Armas, J.; Aparicio, A.

    2007-01-01

    Makrofol detectors are commonly used for long-term radon ( 222 Rn) measurements in houses, schools and workplaces. The use of this type of passive detectors for the determination of radon concentrations requires the counting of the nuclear tracks produced by alpha particles on the detecting material. The 'image reduction and analysis facility' (IRAF) software package is a piece of software commonly used in astronomical applications. It allows detailed counting and mapping of sky sections where stars are grouped very closely, even forming clusters. In order to count the nuclear tracks in our Makrofol radon detectors, we have developed an inter-disciplinary application that takes advantage of the similitude that exist between counting stars in a dark sky and tracks in a track-etch detector. Thus, a low cost semi-automatic system has been set up in our laboratory which utilises a commercially available desktop scanner and the IRAF software package. A detailed description of the proposed semi-automatic method and its performance, in comparison to ocular counting, is described in detail here. In addition, the calibration factor for this procedure, 2.97+/-0.07kBqm -3 htrack -1 cm 2 , has been calculated based on the results obtained from exposing 46 detectors to certified radon concentrations. Furthermore, the results of a preliminary radon survey carried out in 62 schools in Tenerife island (Spain), using Makrofol detectors, counted with the mentioned procedure, are briefly presented. The results reported here indicate that the developed procedure permits a fast, accurate and unbiased determination of the radon tracks in a large number of detectors. The measurements carried out in the schools showed that the radon concentrations in at least 12 schools were above 200Bqm -3 and, in two of them, above 400Bqm -3 . Further studies should be performed at those schools following the European Union recommendations about radon concentrations in buildings

  5. Temporal trends in sperm count

    DEFF Research Database (Denmark)

    Levine, Hagai; Jørgensen, Niels; Martino-Andrade, Anderson

    2017-01-01

    a predefined protocol 7518 abstracts were screened and 2510 full articles reporting primary data on SC were reviewed. A total of 244 estimates of SC and TSC from 185 studies of 42 935 men who provided semen samples in 1973-2011 were extracted for meta-regression analysis, as well as information on years.......006, respectively). WIDER IMPLICATIONS: This comprehensive meta-regression analysis reports a significant decline in sperm counts (as measured by SC and TSC) between 1973 and 2011, driven by a 50-60% decline among men unselected by fertility from North America, Europe, Australia and New Zealand. Because......BACKGROUND: Reported declines in sperm counts remain controversial today and recent trends are unknown. A definitive meta-analysis is critical given the predictive value of sperm count for fertility, morbidity and mortality. OBJECTIVE AND RATIONALE: To provide a systematic review and meta-regression...

  6. CERNDxCTA counting mode chip

    International Nuclear Information System (INIS)

    Moraes, D.; Kaplon, J.; Nygard, E.

    2008-01-01

    This ASIC is a counting mode front-end electronic optimized for the readout of CdZnTe/CdTe and silicon sensors, for possible use in applications where the flux of ionizing radiation is high. The chip is implemented in 0.25 μm CMOS technology. The circuit comprises 128 channels equipped with a transimpedance amplifier followed by a gain shaper stage with 21 ns peaking time, two discriminators and two 18-bit counters. The channel architecture is optimized for the detector characteristics in order to achieve the best energy resolution at counting rates of up to 5 M counts/second. The amplifier shows a linear sensitivity of 118 mV/fC and an equivalent noise charge of about 711 e - , for a detector capacitance of 5 pF. Complete evaluation of the circuit is presented using electronic pulses and pixel detectors

  7. Seed counting system evaluation using arduino microcontroller

    Directory of Open Access Journals (Sweden)

    Paulo Fernando Escobar Paim

    2018-01-01

    Full Text Available The development of automated systems has been highlighted in the most diverse productive sectors, among them, the agricultural sector. These systems aim to optimize activities by increasing operational efficiency and quality of work. In this sense, the present work has the objective of evaluating a prototype developed for seed count in laboratory, using Arduino microcontroller. The prototype of the system for seed counting was built using a dosing mechanism commonly used in seeders, electric motor, Arduino Uno, light dependent resistor and light emitting diode. To test the prototype, a completely randomized design (CRD was used in a two-factorial scheme composed of three groups defined according to the number of seeds (500, 1000 and 1500 seeds tested, three speeds of the dosing disc that allowed the distribution in 17, 21 and 32 seeds per second, with 40 repetitions evaluating the seed counting prototype performance in different speeds. The prototype of the bench counter showed a moderate variability of seed number of counted within the nine tests and a high precision in the seed count on the distribution speeds of 17 and 21 seeds per second (s-1 up to 1500 seeds tested. Therefore, based on the observed results, the developed prototype presents itself as an excellent tool for counting seeds in laboratory.

  8. Using DNA to test the utility of pellet-group counts as an index of deer counts

    Science.gov (United States)

    T. J. Brinkman; D. K. Person; W. Smith; F. Stuart Chapin; K. McCoy; M. Leonawicz; K. Hundertmark

    2013-01-01

    Despite widespread use of fecal pellet-group counts as an index of ungulate density, techniques used to convert pellet-group numbers to ungulate numbers rarely are based on counts of known individuals, seldom evaluated across spatial and temporal scales, and precision is infrequently quantified. Using DNA from fecal pellets to identify individual deer, we evaluated the...

  9. Tutorial on X-ray photon counting detector characterization.

    Science.gov (United States)

    Ren, Liqiang; Zheng, Bin; Liu, Hong

    2018-01-01

    Recent advances in photon counting detection technology have led to significant research interest in X-ray imaging. As a tutorial level review, this paper covers a wide range of aspects related to X-ray photon counting detector characterization. The tutorial begins with a detailed description of the working principle and operating modes of a pixelated X-ray photon counting detector with basic architecture and detection mechanism. Currently available methods and techniques for charactering major aspects including energy response, noise floor, energy resolution, count rate performance (detector efficiency), and charge sharing effect of photon counting detectors are comprehensively reviewed. Other characterization aspects such as point spread function (PSF), line spread function (LSF), contrast transfer function (CTF), modulation transfer function (MTF), noise power spectrum (NPS), detective quantum efficiency (DQE), bias voltage, radiation damage, and polarization effect are also remarked. A cadmium telluride (CdTe) pixelated photon counting detector is employed for part of the characterization demonstration and the results are presented. This review can serve as a tutorial for X-ray imaging researchers and investigators to understand, operate, characterize, and optimize photon counting detectors for a variety of applications.

  10. UAM JOURNAL 2009

    African Journals Online (AJOL)

    of ways, for instance changing water courses, draining wetlands ... A survey of the wild Avi-fauna within Makurdi Metropolis was undertaken during the dry and rainy seasons ... different species were counted during the wet season. Six species ...

  11. A Literature Survey to Identify Potentially Volatile Iodine-Bearing Species Present in Off-Gas Streams

    Energy Technology Data Exchange (ETDEWEB)

    Bruffey, S. H. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Spencer, B. B. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Strachan, D. M. [Strata-G, Knoxville, TN (United States); Jubin, R. T. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Soelberg, N. R. [Idaho National Lab. (INL), Idaho Falls, ID (United States); Riley, B. J. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States)

    2015-06-30

    Four radionuclides have been identified as being sufficiently volatile in the reprocessing of nuclear fuel that their gaseous release needs to be controlled to meet regulatory requirements (Jubin et al. 2011, 2012). These radionuclides are 3H, 14C, 85Kr, and 129I. Of these, 129I has the longest half-life and potentially high biological impact. Accordingly, control of the release of 129I is most critical with respect to the regulations for the release of radioactive material in stack emissions. It is estimated that current EPA regulations (EPA 2010) would require any reprocessing plant in the United States to limit 129I release to less than 0.05 Ci/MTIHM for a typical fuel burnup of 55 gigawatt days per metric tonne (GWd/t) (Jubin 2011). The study of inorganic iodide in off-gas systems has been almost exclusively limited to I2 and the focus of organic iodide studies has been CH3I. In this document, we provide the results of an examination of publically available literature that is relevant to the presence and sources of both inorganic and organic iodine-bearing species in reprocessing plants. We especially focus on those that have the potential to be poorly sequestered with traditional capture methodologies. Based on the results of the literature survey and some limited thermodynamic modeling, the inorganic iodine species hypoiodous acid (HOI) and iodine monochloride (ICl) were identified as potentially low-sorbing iodine species that could present in off-gas systems. Organic species of interest included both short chain alkyl iodides such as methyl iodide (CH3I) and longer alkyl iodides up to iodododecane (C10H21I). It was found that fuel dissolution may provide conditions conducive to HOI formation and has been shown to result in volatile long-chain alkyl iodides, though these may not volatilize until later in the reprocessing sequence. Solvent extraction processes were found to be significant sources of various organic iodine-bearing species; formation of these

  12. When the douglas-firs were counted: The beginning of the Forest Survey

    Science.gov (United States)

    Ivan Doig

    1976-01-01

    The wonders which Phil Briegleb remembered from that stint of work - the dark green spill of forest from ridgeline to valley floor, the colonnade of giant boles crowding acre upon acre, the Depression-staving paycheck earned by sizing up this big timber - may have been grand, all right, but no more so than the language which spelled out the project. The Forest Survey...

  13. Scintillation counting apparatus

    International Nuclear Information System (INIS)

    Noakes, J.E.

    1978-01-01

    Apparatus is described for the accurate measurement of radiation by means of scintillation counters and in particular for the liquid scintillation counting of both soft beta radiation and gamma radiation. Full constructional and operating details are given. (UK)

  14. Project and construction of counting system for neutron probe

    International Nuclear Information System (INIS)

    Monteiro, W.P.

    1985-01-01

    A counting system was developed for coupling neutron probe aiming to register pulses produced by slow neutron interaction in the detector. The neutron probe consists of fast neutron source, thermal neutron detector, amplifier circuit and pulse counting circuit. The counting system is composed by counting circuit, timer and signal circuit. (M.C.K.)

  15. Counts and colors of faint galaxies

    International Nuclear Information System (INIS)

    Kron, R.G.

    1980-01-01

    The color distribution of faint galaxies is an observational dimension which has not yet been fully exploited, despite the important constraints obtainable for galaxy evolution and cosmology. Number-magnitude counts alone contain very diluted information about the state of things because galaxies from a wide range in redshift contribute to the counts at each magnitude. The most-frequently-seen type of galaxy depends on the luminosity function and the relative proportions of galaxies of different spectral classes. The addition of color as a measured quantity can thus considerably sharpen the interpretation of galaxy counts since the apparent color depends on the redshift and rest-frame spectrum. (Auth.)

  16. Urban and rural habitats differ in number and type of bird feeders and in bird species consuming supplementary food.

    Science.gov (United States)

    Tryjanowski, Piotr; Skórka, Piotr; Sparks, Tim H; Biaduń, Waldemar; Brauze, Tomasz; Hetmański, Tomasz; Martyka, Rafał; Indykiewicz, Piotr; Myczko, Łukasz; Kunysz, Przemysław; Kawa, Piotr; Czyż, Stanisław; Czechowski, Paweł; Polakowski, Michał; Zduniak, Piotr; Jerzak, Leszek; Janiszewski, Tomasz; Goławski, Artur; Duduś, Leszek; Nowakowski, Jacek J; Wuczyński, Andrzej; Wysocki, Dariusz

    2015-10-01

    Bird feeding is one of the most widespread direct interactions between man and nature, and this has important social and environmental consequences. However, this activity can differ between rural and urban habitats, due to inter alia habitat structure, human behaviour and the composition of wintering bird communities. We counted birds in 156 squares (0.25 km(2) each) in December 2012 and again in January 2013 in locations in and around 26 towns and cities across Poland (in each urban area, we surveyed 3 squares and also 3 squares in nearby rural areas). At each count, we noted the number of bird feeders, the number of bird feeders with food, the type of feeders, additional food supplies potentially available for birds (bread offered by people, bins) and finally the birds themselves. In winter, urban and rural areas differ in the availability of food offered intentionally and unintentionally to birds by humans. Both types of food availability are higher in urban areas. Our findings suggest that different types of bird feeder support only those species specialized for that particular food type and this relationship is similar in urban and rural areas.

  17. Selecting the right statistical model for analysis of insect count data by using information theoretic measures.

    Science.gov (United States)

    Sileshi, G

    2006-10-01

    Researchers and regulatory agencies often make statistical inferences from insect count data using modelling approaches that assume homogeneous variance. Such models do not allow for formal appraisal of variability which in its different forms is the subject of interest in ecology. Therefore, the objectives of this paper were to (i) compare models suitable for handling variance heterogeneity and (ii) select optimal models to ensure valid statistical inferences from insect count data. The log-normal, standard Poisson, Poisson corrected for overdispersion, zero-inflated Poisson, the negative binomial distribution and zero-inflated negative binomial models were compared using six count datasets on foliage-dwelling insects and five families of soil-dwelling insects. Akaike's and Schwarz Bayesian information criteria were used for comparing the various models. Over 50% of the counts were zeros even in locally abundant species such as Ootheca bennigseni Weise, Mesoplatys ochroptera Stål and Diaecoderus spp. The Poisson model after correction for overdispersion and the standard negative binomial distribution model provided better description of the probability distribution of seven out of the 11 insects than the log-normal, standard Poisson, zero-inflated Poisson or zero-inflated negative binomial models. It is concluded that excess zeros and variance heterogeneity are common data phenomena in insect counts. If not properly modelled, these properties can invalidate the normal distribution assumptions resulting in biased estimation of ecological effects and jeopardizing the integrity of the scientific inferences. Therefore, it is recommended that statistical models appropriate for handling these data properties be selected using objective criteria to ensure efficient statistical inference.

  18. Clean Hands Count

    Medline Plus

    Full Text Available ... is starting stop Loading... Watch Queue Queue __count__/__total__ It’s YouTube. Uninterrupted. Loading... Want music and videos ... empower patients to play a role in their care by asking or reminding healthcare providers to clean ...

  19. The Origin of Stellar Species: constraining stellar evolution scenarios with Local Group galaxy surveys

    Science.gov (United States)

    Sarbadhicary, Sumit; Badenes, Carles; Chomiuk, Laura; Maldonado, Jessica; Caprioli, Damiano; Heger, Mairead; Huizenga, Daniel

    2018-01-01

    Our understanding of the progenitors of many stellar species, such as supernovae, massive and low-mass He-burning stars, is limited because of many poorly constrained aspects of stellar evolution theory. For my dissertation, I have focused on using Local Group galaxy surveys to constrain stellar evolution scenarios by measuring delay-time distributions (DTD). The DTD is the hypothetical occurrence rate of a stellar object per elapsed time after a brief burst of star formation. It is the measured distribution of timescales on which stars evolve, and therefore serves as a powerful observational constraint on theoretical progenitor models. The DTD can be measured from a survey of stellar objects and a set of star-formation histories of the host galaxy, and is particularly effective in the Local Group, where high-quality star-formation histories are available from resolved stellar populations. I am currently calculating a SN DTD with supernova remnants (SNRs) in order to provide the strongest constraints on the progenitors of thermonuclear and core-collapse supernovae. However, most SNRs do not have reliable age measurements and their evolution depends on the ambient environment. For this reason, I wrote a radio light curve model of an SNR population to extract the visibility times and rates of supernovae - crucial ingredients for the DTD - from an SNR survey. The model uses observational constraints on the local environments from multi-wavelength surveys, accounts for missing SNRs and employs the latest models of shock-driven particle acceleration. The final calculation of the SN DTD in the Local Group is awaiting completion of a systematic SNR catalog from deep radio-continuum images, now in preparation by a group led by Dr. Laura Chomiuk. I have also calculated DTDs for the LMC population of RR Lyrae and Cepheid variables, which serve as important distance calibrators and stellar population tracers. We find that Cepheids can have delay-times between 10 Myrs - 1 Gyr

  20. Somatic cell count and biochemical components of milk related to udder health in buffaloes

    Directory of Open Access Journals (Sweden)

    S.T. Singh

    2010-02-01

    Full Text Available The 399 clinically healthy quarters from 101 Murrah buffaloes were analyzed for somatic cell count (SCC; DCC and microscope methods and biochemical composition of milk in relation to udder health. The udder health revealed specific subclinical mastitis (SSM in 7% and non-specific mastitis (NSM in 49% of quarters. Latent infections comprised 1%. Staphylococci (43%, streptococci (39% and corynebacteria (18% constituted chief etiological agents in SSM. Electrical conductivity increased significantly both in SSM and NSM compared to healthy quarters. Significant effects for SNF and density were seen in SSM only. DCC and microscope depicted similar cell counts with a correlation coefficient of 0.89. The correlations of DCC with CMT and EC were 0.85 and 0.51, respectively. Quarters with negative CMT reactions had DCC values of < 3 × 105 cells/ml. The DCC means for negative, trace, and +1 to 2 CMT scores were 122, 238, and 593 (× 103 cells/ml, respectively. Lactose with discrimination ability of 83.76% was found better indicator of udder inflammation in buffaloes. Buffaloes unlike cows have low numbers of quarter infections, respond similarly as cows to udder inflammation but at different levels, and DCC may be effectively employed for expressing milk cell count in this species.

  1. NEFSC Survey Indices of Abundance

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Northeast Fisheries Survey Bottom trawl survey indices of abundance such as stratified mean number per tow or mean weight per tow by species stock. Includes indices...

  2. Combining cluster number counts and galaxy clustering

    Energy Technology Data Exchange (ETDEWEB)

    Lacasa, Fabien; Rosenfeld, Rogerio, E-mail: fabien@ift.unesp.br, E-mail: rosenfel@ift.unesp.br [ICTP South American Institute for Fundamental Research, Instituto de Física Teórica, Universidade Estadual Paulista, São Paulo (Brazil)

    2016-08-01

    The abundance of clusters and the clustering of galaxies are two of the important cosmological probes for current and future large scale surveys of galaxies, such as the Dark Energy Survey. In order to combine them one has to account for the fact that they are not independent quantities, since they probe the same density field. It is important to develop a good understanding of their correlation in order to extract parameter constraints. We present a detailed modelling of the joint covariance matrix between cluster number counts and the galaxy angular power spectrum. We employ the framework of the halo model complemented by a Halo Occupation Distribution model (HOD). We demonstrate the importance of accounting for non-Gaussianity to produce accurate covariance predictions. Indeed, we show that the non-Gaussian covariance becomes dominant at small scales, low redshifts or high cluster masses. We discuss in particular the case of the super-sample covariance (SSC), including the effects of galaxy shot-noise, halo second order bias and non-local bias. We demonstrate that the SSC obeys mathematical inequalities and positivity. Using the joint covariance matrix and a Fisher matrix methodology, we examine the prospects of combining these two probes to constrain cosmological and HOD parameters. We find that the combination indeed results in noticeably better constraints, with improvements of order 20% on cosmological parameters compared to the best single probe, and even greater improvement on HOD parameters, with reduction of error bars by a factor 1.4-4.8. This happens in particular because the cross-covariance introduces a synergy between the probes on small scales. We conclude that accounting for non-Gaussian effects is required for the joint analysis of these observables in galaxy surveys.

  3. Cerenkov counting and Cerenkov-scintillation counting with high refractive index organic liquids using a liquid scintillation counter

    Energy Technology Data Exchange (ETDEWEB)

    Wiebe, L I; Helus, F; Maier-Borst, W [Deutsches Krebsforschungszentrum, Heidelberg (Germany, F.R.). Inst. fuer Nuklearmedizin

    1978-06-01

    /sup 18/F and /sup 14/C radioactivity was measured in methyl salicylate (MS), a high refractive index hybrid Cherenkov-scintillation generating medium, using a liquid scintillation counter. At concentrations of up to 21.4%, in MS, dimethyl sulfoxide (DMSO) quenched /sup 14/C fluorescence, and with a 10-fold excess of DMSO over MS, /sup 18/F count rates were reduced below that for DMSO alone, probably as a result of concentration-independent self-quenching due to 'dark-complex' formation. DMSO in lower concentrations did not reduce the counting efficiency of /sup 18/F in MS. Nitrobenzene was a concentration-dependent quencher for both /sup 14/C and /sup 18/F in MS. Chlorobenzene (CB) and DMSO were both found to be weak Cherenkov generators with /sup 18/F. Counting efficiencies for /sup 18/F in MS, CB, and DMSO were 50.3, 7.8 and 4.3% respectively in the coincidence counting mode, and 58.1, 13.0 and 6.8% in the singles mode. /sup 14/C efficiencies were 14.4 and 22.3% for coincidence and singles respectively, and 15.3 and 42.0% using a modern counter designed for coincidence and single photon counting. The high /sup 14/C and /sup 18/F counting efficiency in MS are discussed with respect to excitation mechanism, on the basis of quench and channels ratios changes observed. It is proposed that MS functions as an efficient Cherenkov-scintillation generator for high-energy beta emitters such as /sup 18/F, and as a low-efficiency scintillator for weak beta emitting radionuclides such as /sup 14/C.

  4. Clean Hands Count

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    Full Text Available ... Queue __count__/__total__ It’s YouTube. Uninterrupted. Loading... Want music and videos with zero ads? Get YouTube Red. ... 396 views 3:10 Wash 'Em - Hand Hygiene Music Video - Duration: 5:46. Thomas Jefferson University & Jefferson ...

  5. Clean Hands Count

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  6. Clean Hands Count

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  7. Clean Hands Count

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    Full Text Available ... Queue __count__/__total__ It’s YouTube. Uninterrupted. Loading... Want music and videos with zero ads? Get YouTube Red. ... 786 views 1:36 Wash 'Em - Hand Hygiene Music Video - Duration: 5:46. Jefferson Health 413,702 ...

  8. Clean Hands Count

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  9. Clean Hands Count

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    Full Text Available ... Queue __count__/__total__ It’s YouTube. Uninterrupted. Loading... Want music and videos with zero ads? Get YouTube Red. ... 414 views 3:10 Wash 'Em - Hand Hygiene Music Video - Duration: 5:46. Thomas Jefferson University & Jefferson ...

  10. Clean Hands Count

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  11. Clean Hands Count

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  12. Clean Hands Count

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  13. Clean Hands Count

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  14. Clean Hands Count

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    Full Text Available ... Queue __count__/__total__ It’s YouTube. Uninterrupted. Loading... Want music and videos with zero ads? Get YouTube Red. ... 029 views 3:10 Wash 'Em - Hand Hygiene Music Video - Duration: 5:46. Jefferson Health 411,974 ...

  15. Clean Hands Count

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    Full Text Available ... Queue __count__/__total__ It’s YouTube. Uninterrupted. Loading... Want music and videos with zero ads? Get YouTube Red. ... 384 views 1:19 Wash 'Em - Hand Hygiene Music Video - Duration: 5:46. Thomas Jefferson University & Jefferson ...

  16. Clean Hands Count

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    Full Text Available ... Queue __count__/__total__ It’s YouTube. Uninterrupted. Loading... Want music and videos with zero ads? Get YouTube Red. ... 460 views 3:10 Wash 'Em - Hand Hygiene Music Video - Duration: 5:46. Thomas Jefferson University & Jefferson ...

  17. Clean Hands Count

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  18. Clean Hands Count

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  19. Risk communication with Fukushima residents affected by the Fukushima Daiichi accident at whole-body counting

    Energy Technology Data Exchange (ETDEWEB)

    Gunji, I.; Furuno, A.; Yonezawa, R.; Sugiyama, K. [Risk Communication Study Office, Japan Atomic Energy Agency 4-33 Muramatsu, Tokai-mura, Ibaraki, 319-1194 (Japan)

    2013-07-01

    After the Tokyo Electric Power Company (TEPCO) Fukushima Daiichi nuclear power plant accident, the Tokai Research and Development Center of the Japan Atomic Energy Agency (JAEA) have had direct dialogue as risk communication with Fukushima residents who underwent whole-body counting examination (WBC). The purpose of the risk communication was to exchange information and opinions about radiation in order to mitigate Fukushima residents' anxiety and stress. Two kinds of opinion surveys were performed: one survey evaluated residents' views of the nuclear accident itself and the second survey evaluated the management of WBC examination as well as the quality of JAEA's communication skills on risks. It appears that most Fukushima residents seem to have reduced their anxiety level after the direct dialogue. The results of the surveys show that Fukushima residents have the deepest anxiety and concern about their long-term health issues and that they harbor anger toward the government and TEPCO. On the other hand, many WBC patients and patients' relatives have expressed gratitude for help in reducing their feelings of anxiety.

  20. Risk communication with Fukushima residents affected by the Fukushima Daiichi accident at whole-body counting

    International Nuclear Information System (INIS)

    Gunji, I.; Furuno, A.; Yonezawa, R.; Sugiyama, K.

    2013-01-01

    After the Tokyo Electric Power Company (TEPCO) Fukushima Daiichi nuclear power plant accident, the Tokai Research and Development Center of the Japan Atomic Energy Agency (JAEA) have had direct dialogue as risk communication with Fukushima residents who underwent whole-body counting examination (WBC). The purpose of the risk communication was to exchange information and opinions about radiation in order to mitigate Fukushima residents' anxiety and stress. Two kinds of opinion surveys were performed: one survey evaluated residents' views of the nuclear accident itself and the second survey evaluated the management of WBC examination as well as the quality of JAEA's communication skills on risks. It appears that most Fukushima residents seem to have reduced their anxiety level after the direct dialogue. The results of the surveys show that Fukushima residents have the deepest anxiety and concern about their long-term health issues and that they harbor anger toward the government and TEPCO. On the other hand, many WBC patients and patients' relatives have expressed gratitude for help in reducing their feelings of anxiety

  1. SUMS Counts-Related Projects

    Data.gov (United States)

    Social Security Administration — Staging Instance for all SUMs Counts related projects including: Redeterminations/Limited Issue, Continuing Disability Resolution, CDR Performance Measures, Initial...

  2. Traffic noise affects forest bird species in a protected tropical forest

    Directory of Open Access Journals (Sweden)

    J. Edgardo Arévalo

    2011-06-01

    Full Text Available The construction of roads near protected forest areas alters ecosystem function by creating habitat fragmentation and through several direct and indirect negative effects such as increased pollution, animal mortality through collisions, disturbance caused by excessive noise and wind turbulence. Noise in particular may have strong negative effects on animal groups such as frogs and birds, that rely on sound for communication as it can negatively interfere with vocalizations used for territorial defense or courtship. Thus, birds are expected to be less abundant close to the road where noise levels are high. In this study, we examined the effects of road traffic noise levels on forest bird species in a protected tropical forest in Costa Rica. Data collection was conducted in a forest segment of the Carara National Park adjacent to the Coastal Highway. We carried out 120 ten minute bird surveys and measured road noise levels 192 times from the 19th to the 23rd of April and from the 21st to the 28th of November, 2008. To maximize bird detection for the species richness estimates we operated six 12m standard mist nets simultaneously with the surveys. The overall mist-netting effort was 240net/h. In addition, we estimated traffic volumes by tallying the number of vehicles passing by the edge of the park using 24 one hour counts throughout the study. We found that the relative abundance of birds and bird species richness decreased significantly with the increasing traffic noise in the dry and wet season. Noise decreased significantly and in a logarithmic way with distance from the road in both seasons. However, noise levels at any given distance were significantly higher in the dry compared to the wet season. Our results suggest that noise might be an important factor influencing road bird avoidance as measured by species richness and relative abundance. Since the protected forest in question is located in a national park subjected to tourist visitation

  3. Degree of polarization and source counts of faint radio sources from Stacking Polarized intensity

    International Nuclear Information System (INIS)

    Stil, J. M.; George, S. J.; Keller, B. W.; Taylor, A. R.

    2014-01-01

    We present stacking polarized intensity as a means to study the polarization of sources that are too faint to be detected individually in surveys of polarized radio sources. Stacking offers not only high sensitivity to the median signal of a class of radio sources, but also avoids a detection threshold in polarized intensity, and therefore an arbitrary exclusion of sources with a low percentage of polarization. Correction for polarization bias is done through a Monte Carlo analysis and tested on a simulated survey. We show that the nonlinear relation between the real polarized signal and the detected signal requires knowledge of the shape of the distribution of fractional polarization, which we constrain using the ratio of the upper quartile to the lower quartile of the distribution of stacked polarized intensities. Stacking polarized intensity for NRAO VLA Sky Survey (NVSS) sources down to the detection limit in Stokes I, we find a gradual increase in median fractional polarization that is consistent with a trend that was noticed before for bright NVSS sources, but is much more gradual than found by previous deep surveys of radio polarization. Consequently, the polarized radio source counts derived from our stacking experiment predict fewer polarized radio sources for future surveys with the Square Kilometre Array and its pathfinders.

  4. Five-year resurvey for endangered species on Naval Petroleum Reserve No. 1, (Elk Hills), Kern County, California

    International Nuclear Information System (INIS)

    Otten, M.R.M.; O'Farrell, T.P.; Briden, L.E.

    1992-06-01

    A transect survey of Naval Petroleum Reserve No. 1 (NPR-1), Kern County, California, was conducted between July 3 and August 5, 1989 to determine the distribution and relative density of endangered species and other wildlife. Results were compared with other reported results, particularly the 1979 and 1984 surveys of NPR-1. A total of 589.8 miles of transects were walked through approximately 47,235 acres in all or parts of 81 sections. Of the 516 San Joaquin kit fox dens observed, 496 were typical subterranean dens and 20 were atypical dens in man-made structures. Estimated den density was 36.7 ± 4.1 per square mile; and relative den density was 10.5/1,000 acres for all of NPR-1. Characteristics of typical kit fox dens were comparable to characteristics reported for other studies, except mean number of entrances per den, which was lower. Observers counted a total of 300 dens previously marked with an identification sign, 191 of which contained at least one complete entrance and would have been observed without a sign. Relative densities of preferred kit fox prey, black-toiled jackrabbits (40.1/1,000 acres) and desert cottontails (14.1/1,000 acres), were lower than previously recorded. Five blunt-nosed leopard lizards were observed along the southwest and northeast perimeter of the Reserve. Most of the 59 giant kangaroo rat burrow systems were observed in the flat terrain along the northeast and south perimeters of the Reserve. San Joaquin antelope squirrels were observed in the central and western parts of NPR- 1. A total of 73 antelope squirrels were observed, and the relative density was 1.511,000 acres. A total.of 30 possible environmental hazards were observed during transect surveys. Most of these were oil and water leaks of small size and appeared to pose little risk to endangered species. Results of this survey indicate that NPR-1 is supporting less wildlife than it did during either the 1979 or 1984 surveys

  5. Change-Point Methods for Overdispersed Count Data

    National Research Council Canada - National Science Library

    Wilken, Brian A

    2007-01-01

    .... Although the Poisson model is often used to model count data, the two-parameter gamma-Poisson mixture parameterization of the negative binomial distribution is often a more adequate model for overdispersed count data...

  6. Rediscovery of the Central American Colubrid snake, Sibon argus, with comments on related species from the region

    Science.gov (United States)

    Savage, J.M.; McDiarmid, R.W.

    1992-01-01

    Sibon argus Cope, 1875, long known only from the holotype, is redescribed based on material from Costa Rica and Panama. It differs from the only other member of the genus having an ocellate dorsal pattern (S. longifrenis) in its attenuate habitus, enlarged blunt head, protuberant eyes, and high segmental counts (ventrals 181-201, subcaudals 112-121, total segmental counts 294-312). Sibon longifrenis of Atlantic slope Costa Rica and western Panama (ventrals 151-173, subcaudals 82-103, total segmental counts 231-275) is also redescribed. These species differ from all other Sibon in having an ocellate pattern and an enlarged penultimate supralabial bordering the orbit. The allied species, S. annulatus (Costa Rica and Panama) and S. dimidiatus (Mexico to southwestern Costa Rica), are shown to be distinct from S. argus and S. longifenis in scalation and coloration. Although allopatric, S. annulatus and S. dimidiatus differ from one another most strikingly in adult coloration, postmental character states, and ventral counts (x = 175.8 in annulatus and 193.6 in dimidiatus), and are regarded as valid species. Sibon annulatus occurs sympatrically with S. argus in Panama and with S. longifrenis in Costa Rica. Although S. argus and S. longifrenis occur in the same general area on the Atlantic slope of Costa Rica, they have not yet been taken at the same locality.

  7. Leveraging multiple datasets for deep leaf counting

    OpenAIRE

    Dobrescu, Andrei; Giuffrida, Mario Valerio; Tsaftaris, Sotirios A

    2017-01-01

    The number of leaves a plant has is one of the key traits (phenotypes) describing its development and growth. Here, we propose an automated, deep learning based approach for counting leaves in model rosette plants. While state-of-the-art results on leaf counting with deep learning methods have recently been reported, they obtain the count as a result of leaf segmentation and thus require per-leaf (instance) segmentation to train the models (a rather strong annotation). Instead, our method tre...

  8. Gulf of Mexico Protected Species Assessment Aerial Surveys

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — These data sets include a compilation of aerial line-transect surveys conducted over continental shelf waters of the Gulf of Mexico since 1992. The majority of these...

  9. Detection limits for radioanalytical counting techniques

    International Nuclear Information System (INIS)

    Hartwell, J.K.

    1975-06-01

    In low-level radioanalysis it is usually necessary to test the sample net counts against some ''Critical Level'' in order to determine if a given result indicates detection. This is an interpretive review of the work by Nicholson (1963), Currie (1968) and Gilbert (1974). Nicholson's evaluation of three different computational formulas for estimation of the ''Critical Level'' is discussed. The details of Nicholson's evaluation are presented along with a basic discussion of the testing procedures used. Recommendations are presented for calculation of confidence intervals, for reporting of analytical results, and for extension of the derived formula to more complex cases such as multiple background counts, multiple use of a single background count, and gamma spectrometric analysis

  10. Counts of low-Redshift SDSS quasar candidates

    International Nuclear Information System (INIS)

    Zeljko Ivezic

    2004-01-01

    We analyze the counts of low-redshift quasar candidates selected using nine-epoch SDSS imaging data. The co-added catalogs are more than 1 mag deeper than single-epoch SDSS data, and allow the selection of low-redshift quasar candidates using UV-excess and also variability techniques. The counts of selected candidates are robustly determined down to g = 21.5. This is about 2 magnitudes deeper than the position of a change in the slope of the counts reported by Boyle (and others) (1990, 2000) for a sample selected by UV-excess, and questioned by Hawkins and Veron (1995), who utilized a variability-selected sample. Using SDSS data, we confirm a change in the slope of the counts for both UV-excess and variability selected samples, providing strong support for the Boyle (and others) results

  11. The Nustar Extragalactic Surveys: The Number Counts of Active Galactic Nuclei and the Resolved Fraction of the Cosmic X-Ray Background

    DEFF Research Database (Denmark)

    Harrison, F. A.; Aird, J.; Civano, F.

    2016-01-01

    . The measured NuSTAR counts lie significantly abovesimple extrapolation with a Euclidian slope to low flux of the Swift/BAT 15–55 keV number counts measured at higher fluxes (S(15–55 keV) ≤ 10−11 erg s-1 cm-2), reflecting the evolution of the AGN population between the Swift/BAT local (z ...STAR’s z ~ 1 sample. CXB synthesis models, which account for AGNevolution, lie above the Swift/BAT measurements, suggesting that they do not fully capture the evolution of obscured AGNs at low redshifts....... cm-2 ≤ 10-12, a factor ∼100 fainter than previous measurements. The 8–24 keV number counts match predictions from AGN populationsynthesis models, directly confirming the existence of a population of obscured and/or hard X-ray sources inferredfrom the shape of the integrated cosmic X-ray background...

  12. Liquid scintillation counting of chlorophyll

    International Nuclear Information System (INIS)

    Fric, F.; Horickova, B.; Haspel-Horvatovic, E.

    1975-01-01

    A precise and reproducible method of liquid scintillation counting was worked out for measuring the radioactivity of 14 C-labelled chlorophyll a and chlorophyll b solutions without previous bleaching. The spurious count rate caused by luminescence of the scintillant-chlorophyll system is eliminated by using a suitable scintillant and by measuring the radioactivity at 4 to 8 0 C after an appropriate time of dark adaptation. Bleaching of the chlorophyll solutions is necessary only for measuring of very low radioactivity. (author)

  13. Designing primers and evaluation of the efficiency of propidium monoazide – Quantitative polymerase chain reaction for counting the viable cells of Lactobacillus gasseri and Lactobacillus salivarius

    Directory of Open Access Journals (Sweden)

    Chieh-Hsien Lai

    2017-07-01

    Full Text Available The purpose of this study is to evaluate the efficiency of using propidium monoazide (PMA real-time quantitative polymerase chain reaction (qPCR to count the viable cells of Lactobacillus gasseri and Lactobacillus salivarius in probiotic products. Based on the internal transcription spacer and 23S rRNA genes, two primer sets specific for these two Lactobacillus species were designed. For a probiotic product, the total deMan Rogosa Sharpe plate count was 8.65±0.69 log CFU/g, while for qPCR, the cell counts of L. gasseri and L. salivarius were 8.39±0.14 log CFU/g and 8.57±0.24 log CFU/g, respectively. Under the same conditions, for its heat-killed product, qPCR counts for L. gasseri and L. salivarius were 6.70±0.16 log cells/g and 7.67±0.20 log cells/g, while PMA-qPCR counts were 5.33±0.18 log cells/g and 5.05±0.23 log cells/g, respectively. For cell dilutions with a viable cell count of 8.5 log CFU/mL for L. gasseri and L. salivarius, after heat killing, the PMA-qPCR count for both Lactobacillus species was near 5.5 log cells/mL. When the PMA-qPCR counts of these cell dilutions were compared before and after heat killing, although some DNA might be lost during the heat killing, significant qPCR signals from dead cells, i.e., about 4–5 log cells/mL, could not be reduced by PMA treatment. Increasing PMA concentrations from 100 μM to 200 μM or light exposure time from 5 minutes to 15 minutes had no or, if any, only minor effect on the reduction of qPCR signals from their dead cells. Thus, to differentiate viable lactic acid bacterial cells from dead cells using the PMA-qPCR method, the efficiency of PMA to reduce the qPCR signals from dead cells should be notable.

  14. Estimating Effects of Species Interactions on Populations of Endangered Species.

    Science.gov (United States)

    Roth, Tobias; Bühler, Christoph; Amrhein, Valentin

    2016-04-01

    Global change causes community composition to change considerably through time, with ever-new combinations of interacting species. To study the consequences of newly established species interactions, one available source of data could be observational surveys from biodiversity monitoring. However, approaches using observational data would need to account for niche differences between species and for imperfect detection of individuals. To estimate population sizes of interacting species, we extended N-mixture models that were developed to estimate true population sizes in single species. Simulations revealed that our model is able to disentangle direct effects of dominant on subordinate species from indirect effects of dominant species on detection probability of subordinate species. For illustration, we applied our model to data from a Swiss amphibian monitoring program and showed that sizes of expanding water frog populations were negatively related to population sizes of endangered yellow-bellied toads and common midwife toads and partly of natterjack toads. Unlike other studies that analyzed presence and absence of species, our model suggests that the spread of water frogs in Central Europe is one of the reasons for the decline of endangered toad species. Thus, studying population impacts of dominant species on population sizes of endangered species using data from biodiversity monitoring programs should help to inform conservation policy and to decide whether competing species should be subject to population management.

  15. Comparative bio-ecological studies among two species of Urentius lace bugs (Hemiptera: Tingidae in Sudan

    Directory of Open Access Journals (Sweden)

    Abdalla Abdelrahim Satti

    2012-06-01

    Full Text Available Among the prevalent lace bugs in Sudan, Urentius hystricellus and Urentius euonymus are important pests of eggplant and pigeon pea, respectively. They attack alternative hosts, but some plants were reported as common hosts for both species. In fact, the identity of these pests and their actual host plants seems to be confusing. Therefore, the main objectives of this work were to; differentiate between such pest species based on certain morpho-biological investigations, verify their hosts’ ranges and study their intra-host distributions and seasonal trends through field surveys and experiments. The results showed clear morphological and biological differences among the two lace bug species. The durations of pre-imaginal stages of U. hystricellus were shorter than those of U. euonymus, while each pest took shorter durations in autumn as compared with winter season. Each pest has its own host range, and no shared hosts were detected, as believed. Hence, the mistaken hosts were corrected and new hosts were added. Such new records included Solanum incanum for U. hystricellus, and two hosts (Chrozophora plicata and Rhynchosia memnonia for U. euonymus. Counts of insects on either leaf sides have revealed variable distributions in different hosts. The seasonal trends of the two pests showed peak populations during autumn and summer seasons. In conclusion, the study made clear distinctions between U. hystricellus and U. euonymus, and gave supportive findings for ecological management.

  16. A statistical model for estimation of fish density including correlation in size, space, time and between species from research survey data.

    Directory of Open Access Journals (Sweden)

    J Rasmus Nielsen

    Full Text Available Trawl survey data with high spatial and seasonal coverage were analysed using a variant of the Log Gaussian Cox Process (LGCP statistical model to estimate unbiased relative fish densities. The model estimates correlations between observations according to time, space, and fish size and includes zero observations and over-dispersion. The model utilises the fact the correlation between numbers of fish caught increases when the distance in space and time between the fish decreases, and the correlation between size groups in a haul increases when the difference in size decreases. Here the model is extended in two ways. Instead of assuming a natural scale size correlation, the model is further developed to allow for a transformed length scale. Furthermore, in the present application, the spatial- and size-dependent correlation between species was included. For cod (Gadus morhua and whiting (Merlangius merlangus, a common structured size correlation was fitted, and a separable structure between the time and space-size correlation was found for each species, whereas more complex structures were required to describe the correlation between species (and space-size. The within-species time correlation is strong, whereas the correlations between the species are weaker over time but strong within the year.

  17. Geographic distribution and environmental control of vertebral count in Ammodytes spp. along the northern Pacific coast of Japan.

    Science.gov (United States)

    Aoyama, J; Yoshinaga, T; Tanaka, C; Ishii, K

    2017-03-01

    To examine species composition and population structures in sand lance (Ammodytidae) along the northern Pacific coast of Japan, genetic analysis were carried out for specimens collected in 2014 from Otsuchi Bay, Iwate, Ishinomaki Bay, Miyagi, off Soma, Fukushima and Ise-Mikawa Bays, Aichi. The samples consisted of Ammodytes japonicus and Ammodytes heian, of which the latter is a recently described species. Neither species exhibited significant genetic differences among localities. Only A. japonicus was found in the most southern locality at Aichi, but it decreased northward to heian with modes of 65 and 63, respectively, but this characteristic did not differ significantly within a locality (Iwate). This suggests that the vertebral counts of Ammodytes spp. in Japanese waters are probably strongly determined by the environment than by a species-specific genetic trait. © 2016 The Fisheries Society of the British Isles.

  18. Radiation Counting System Software Using Visual Basic

    International Nuclear Information System (INIS)

    Nanda Nagara; Didi Gayani

    2009-01-01

    It has been created a Gamma Radiation Counting System using interface card, which paired with Personal Computer (PC) and operated by the Visual Basic program. The program was set through varied menu selections such as ”Multi Counting” , ”Counting and Record” and ”View Data”. An interface card for data acquisition was formed by using AMD9513 components as a counter and timer which can be programmed. This counting system was tested and used in waste facility in PTNBR and the result is quite good. (author)

  19. Protecting count queries in study design.

    Science.gov (United States)

    Vinterbo, Staal A; Sarwate, Anand D; Boxwala, Aziz A

    2012-01-01

    Today's clinical research institutions provide tools for researchers to query their data warehouses for counts of patients. To protect patient privacy, counts are perturbed before reporting; this compromises their utility for increased privacy. The goal of this study is to extend current query answer systems to guarantee a quantifiable level of privacy and allow users to tailor perturbations to maximize the usefulness according to their needs. A perturbation mechanism was designed in which users are given options with respect to scale and direction of the perturbation. The mechanism translates the true count, user preferences, and a privacy level within administrator-specified bounds into a probability distribution from which the perturbed count is drawn. Users can significantly impact the scale and direction of the count perturbation and can receive more accurate final cohort estimates. Strong and semantically meaningful differential privacy is guaranteed, providing for a unified privacy accounting system that can support role-based trust levels. This study provides an open source web-enabled tool to investigate visually and numerically the interaction between system parameters, including required privacy level and user preference settings. Quantifying privacy allows system administrators to provide users with a privacy budget and to monitor its expenditure, enabling users to control the inevitable loss of utility. While current measures of privacy are conservative, this system can take advantage of future advances in privacy measurement. The system provides new ways of trading off privacy and utility that are not provided in current study design systems.

  20. Upland Nesting Prairie Shorebirds: Use of Managed Wetland Basins and Accuracy of Breeding Surveys

    Directory of Open Access Journals (Sweden)

    Cheri L. Gratto-Trevor

    2006-06-01

    Full Text Available Wetlands in southern Alberta are often managed to benefit waterfowl and cattle production. Effects on other species usually are not examined. I determined the effect of managed wetlands on upland-nesting shorebirds in southern Alberta by comparing numbers of breeding willets (Catoptrophorus semipalmatus, marbled godwits (Limosa fedoa, and long-billed curlews (Numenius americanus among areas of managed wetlands, natural wetland basins, and no wetland basins from 1995 to 2000. Surveys were carried out at 21 sites three times each year. Nine to ten of these areas (each 2 km2 were searched for nests annually from 1998-2000. Numbers of willets and marbled godwits and their nests were always highest in areas with managed wetlands, probably because almost all natural wetland basins were dry in this region in most years. Densities of willets seen during pre-incubation surveys averaged 2.3 birds/km2 in areas of managed wetlands, 0.4 in areas of natural wetland basins, and 0.1 in areas with no wetland basins. Nest densities of willets (one search each season averaged 1.5, 0.9, and 0.3 nests/km2 in areas of managed, natural, and no wetland basins, respectively. Similarly, pre-incubation surveys averaged 1.6, 0.6, and 0.2 godwits/km2 in areas of managed, natural, and no wetland basins, and 1.2, 0.3, and 0.1 godwit nests/km2. For long-billed curlews, pre-incubation surveys averaged 0.1, 0.2, and 0.1 birds/km2, and 0, 0.2, and 0 nests/km2. Nest success was similar in areas with and without managed wetlands. Shallow managed wetlands in this region appear beneficial to willets and marbled godwits, but not necessarily to long-billed curlews. Only 8% of marked willets and godwits with nests in the area were seen or heard during surveys, compared with 29% of pre-laying individuals and 42% of birds with broods. This suggests that a low and variable percentage of these birds is counted during breeding bird surveys, likely limiting their ability to adequately monitor

  1. Alaska Steller Sea Lion Pup Count Database

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — This database contains counts of Steller sea lion pups on rookeries in Alaska made between 1961 and 2015. Pup counts are conducted in late June-July. Pups are...

  2. Monitoring birds, reptiles and butterflies in the St Katherine ...

    African Journals Online (AJOL)

    Fifty-two bird species were recorded during transect and point count surveys of wadis in the St Katherine Protectorate in the mountainous southern region of the Sinai, Egypt. Two species are new to Egypt: Rock Nuthatch (Sitta neumeyer) and Rock Sparrow (Petronia petronia). There were several other notable species: ...

  3. Photon counting and fluctuation of molecular movement

    International Nuclear Information System (INIS)

    Inohara, Koichi

    1978-01-01

    The direct measurement of the fluctuation of molecular motions, which provides with useful information on the molecular movement, was conducted by introducing photon counting method. The utilization of photon counting makes it possible to treat the molecular system consisting of a small number of molecules like a radioisotope in the detection of a small number of atoms, which are significant in biological systems. This method is based on counting the number of photons of the definite polarization emitted in a definite time interval from the fluorescent molecules excited by pulsed light, which are bound to the marked large molecules found in a definite spatial region. Using the probability of finding a number of molecules oriented in a definite direction in the definite spatial region, the probability of counting a number of photons in a definite time interval can be calculated. Thus the measurable count rate of photons can be related with the fluctuation of molecular movement. The measurement was carried out under the condition, in which the probability of the simultaneous arrival of more than two photons at a detector is less than 1/100. As the experimental results, the resolving power of photon-counting apparatus, the frequency distribution of the number of photons of some definite polarization counted for 1 nanosecond are shown. In the solution, the variance of the number of molecules of 500 on the average is 1200, which was estimated from the experimental data by assuming normal distribution. This departure from the Poisson distribution means that a certain correlation does exist in molecular movement. In solid solution, no significant deviation was observed. The correlation existing in molecular movement can be expressed in terms of the fluctuation of the number of molecules. (Nakai, Y.)

  4. Survey of Legionella Species Found in Thai Soil

    Directory of Open Access Journals (Sweden)

    Tatiana C. Travis

    2012-01-01

    Full Text Available Members of the Gram-negative genus Legionella are typically found in freshwater environments, with the exception of L. longbeachae, which is present in composts and potting mixes. When contaminated aerosols are inhaled, legionellosis may result, typically as either the more serious pneumonia Legionnaires’ disease or the less severe flu-like illness Pontiac fever. It is presumed that all species of the genus Legionella are capable of causing disease in humans. As a followup to a prior clinical study of legionellosis in rural Thailand, indigenous soil samples were collected proximal to cases’ homes and workplaces and tested for the presence of legionellae by culture. We obtained 115 isolates from 22/39 soil samples and used sequence-based methods to identify 12 known species of Legionella represented by 87 isolates.

  5. Current status of liquid scintillation counting

    International Nuclear Information System (INIS)

    Klingler, G.W.

    1981-01-01

    Scintillation counting of alpha particles has been used since the turn of the century. The advent of pulse shape discrimination has made this method of detection accurate and reliable. The history, concepts and development of scintillation counting and pulse shape discrimination are discussed. A brief look at the ongoing work in the consolidation of components now used for pulse shape discrimination is included

  6. Screening of Bacillus Species with Potentials of Antibiotics Production

    OpenAIRE

    Faruk Adamu KUTA; Lohya NIMZING; Priscilla Yahemba ORKA’A

    2009-01-01

    Sixteen soil samples were collected from different refuse dump sites in Minna, the capital Niger State, and analysed for the presence of Bacillus species. Physical-chemical analysis of the soil samples revealed the followings: PH value 6.89-8.47; moisture content 1.58 – 21.21% and temperature 27-28ºC. Using both pour plate and streak method of inoculation, total bacterial count in the soil samples ranged from 3.8×104 cfu/g 16.0×104 cfu/g. The identified Bacillus species included: Bacillus cer...

  7. Global coverage of cetacean line-transect surveys: status quo, data gaps and future challenges.

    Directory of Open Access Journals (Sweden)

    Kristin Kaschner

    Full Text Available Knowledge of abundance, trends and distribution of cetacean populations is needed to inform marine conservation efforts, ecosystem models and spatial planning. We compiled a geo-spatial database of published data on cetacean abundance from dedicated visual line-transect surveys and encoded >1100 abundance estimates for 47 species from 430 surveys conducted worldwide from 1975-2005. Our subsequent analyses revealed large spatial, temporal and taxonomic variability and gaps in survey coverage. With the exception of Antarctic waters, survey coverage was biased toward the northern hemisphere, especially US and northern European waters. Overall, <25% of the world's ocean surface was surveyed and only 6% had been covered frequently enough (≥ 5 times to allow trend estimation. Almost half the global survey effort, defined as total area (km(2 covered by all survey study areas across time, was concentrated in the Eastern Tropical Pacific (ETP. Neither the number of surveys conducted nor the survey effort had increased in recent years. Across species, an average of 10% of a species' predicted range had been covered by at least one survey, but there was considerable variation among species. With the exception of three delphinid species, <1% of all species' ranges had been covered frequently enough for trend analysis. Sperm whales emerged from our analyses as a relatively data-rich species. This is a notoriously difficult species to survey visually, and we use this as an example to illustrate the challenges of using available data from line-transect surveys for the detection of trends or for spatial planning. We propose field and analytical methods to fill in data gaps to improve cetacean conservation efforts.

  8. Intertidal species inventory and quantitative data collected on Oahu and Maui, Islands of Hawaii during 2001 - 2005 (NODC Accession 0002447)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Two types of data sets generated by our project: species inventories and quantitative counts of key organisms. The species inventories are a compilation of data...

  9. Valuing local endangered species. The role of intra-species substitutes

    Energy Technology Data Exchange (ETDEWEB)

    Loureiro, Maria L. [Department of Economic Analysis, Universidade de Santiago (Spain); IDEGA, Universidade de Santiago de Compostela, Campus Sur, Avda das Ciencias, S/N. 15782, Santiago de Compostela (Spain); Ojea, Elena [IDEGA, Universidade de Santiago de Compostela, Campus Sur, Avda das Ciencias, S/N. 15782, Santiago de Compostela (Spain)

    2008-12-01

    Valuation of endangered species is important in many circumstances, and particularly when assessing the impact of large accidental oil spills. Previous studies have tested the effects of including in the contingent valuation survey reminders about the existence of diverse substitutes (in terms of other natural resources also in danger of extinction in the same area, other programs to be valued, or alternative uses of money). We include a reminder about the existence of the same biological species not being under danger of extinction elsewhere. We believe this reminder allows individuals to make an easy assessment of the biological scarcity of the species they are supposed to value. Thus, the key difference with previous studies is that valuation of endangered species is combined with an assessment of preferences towards conservation of local and native species. Our WTP results are not sensitive to the information provided about other foreign substitutes. Implications of this finding are discussed. (author)

  10. Valuing local endangered species. The role of intra-species substitutes

    International Nuclear Information System (INIS)

    Loureiro, Maria L.; Ojea, Elena

    2008-01-01

    Valuation of endangered species is important in many circumstances, and particularly when assessing the impact of large accidental oil spills. Previous studies have tested the effects of including in the contingent valuation survey reminders about the existence of diverse substitutes (in terms of other natural resources also in danger of extinction in the same area, other programs to be valued, or alternative uses of money). We include a reminder about the existence of the same biological species not being under danger of extinction elsewhere. We believe this reminder allows individuals to make an easy assessment of the biological scarcity of the species they are supposed to value. Thus, the key difference with previous studies is that valuation of endangered species is combined with an assessment of preferences towards conservation of local and native species. Our WTP results are not sensitive to the information provided about other foreign substitutes. Implications of this finding are discussed. (author)

  11. A cross-sectional survey of bacterial species in plaque from client owned dogs with healthy gingiva, gingivitis or mild periodontitis.

    Directory of Open Access Journals (Sweden)

    Ian J Davis

    Full Text Available Periodontal disease is the most widespread oral disease in dogs which if left untreated results in significant pain to the pet and loss of dentition. The objective of this study was to identify bacterial species in canine plaque that are significantly associated with health, gingivitis and mild periodontitis (<25% attachment loss. In this survey subgingival plaque samples were collected from 223 dogs with healthy gingiva, gingivitis and mild periodontitis with 72 to 77 samples per health status. DNA was extracted from the plaque samples and subjected to PCR amplification of the V1-V3 region of the 16S rDNA. Pyrosequencing of the PCR amplicons identified a total of 274 operational taxonomic units after bioinformatic and statistical analysis. Porphyromonas was the most abundant genus in all disease stages, particularly in health along with Moraxella and Bergeyella. Peptostreptococcus, Actinomyces, and Peptostreptococcaceae were the most abundant genera in mild periodontitis. Logistic regression analysis identified species from each of these genera that were significantly associated with health, gingivitis or mild periodontitis. Principal component analysis showed distinct community profiles in health and disease. The species identified show some similarities with health and periodontal disease in humans but also major differences. In contrast to human, healthy canine plaque was found to be dominated by Gram negative bacterial species whereas Gram positive anaerobic species predominate in disease. The scale of this study surpasses previously published research and enhances our understanding of the bacterial species present in canine subgingival plaque and their associations with health and early periodontal disease.

  12. Consolidated Site (CS) 024 Verification Survey at Former McClellan AFB, Sacramento, California

    Science.gov (United States)

    2015-03-31

    than 26981 counts per minute ( cpm )]. Yellow dots correspond to data points between 2 and 3 SD above the mean (between 26988 and 28649 cpm ). Red...dots represent all data points above 3 SD (greater than 28650 cpm ). Survey personnel expect higher concentrations in areas marked in red. The color...collected for the trench was dirt. Consequently, the background counts observed in this location are different from the trench, approximately 6100 cpm

  13. Counting Possibilia

    Directory of Open Access Journals (Sweden)

    Alfredo Tomasetta

    2010-06-01

    Full Text Available Timothy Williamson supports the thesis that every possible entity necessarily exists and so he needs to explain how a possible son of Wittgenstein’s, for example, exists in our world:he exists as a merely possible object (MPO, a pure locus of potential. Williamson presents a short argument for the existence of MPOs: how many knives can be made by fitting together two blades and two handles? Four: at the most two are concrete objects, the others being merely possible knives and merely possible objects. This paper defends the idea that one can avoid reference and ontological commitment to MPOs. My proposal is that MPOs can be dispensed with by using the notion of rules of knife-making. I first present a solution according to which we count lists of instructions - selected by the rules - describing physical combinations between components. This account, however, has its own difficulties and I eventually suggest that one can find a way out by admitting possible worlds, entities which are more commonly accepted - at least by philosophers - than MPOs. I maintain that, in answering Williamson’s questions, we count classes of physically possible worlds in which the same instance of a general rule is applied.

  14. Accounting for Incomplete Species Detection in Fish Community Monitoring

    Energy Technology Data Exchange (ETDEWEB)

    McManamay, Ryan A [ORNL; Orth, Dr. Donald J [Virginia Polytechnic Institute and State University; Jager, Yetta [ORNL

    2013-01-01

    Riverine fish assemblages are heterogeneous and very difficult to characterize with a one-size-fits-all approach to sampling. Furthermore, detecting changes in fish assemblages over time requires accounting for variation in sampling designs. We present a modeling approach that permits heterogeneous sampling by accounting for site and sampling covariates (including method) in a model-based framework for estimation (versus a sampling-based framework). We snorkeled during three surveys and electrofished during a single survey in suite of delineated habitats stratified by reach types. We developed single-species occupancy models to determine covariates influencing patch occupancy and species detection probabilities whereas community occupancy models estimated species richness in light of incomplete detections. For most species, information-theoretic criteria showed higher support for models that included patch size and reach as covariates of occupancy. In addition, models including patch size and sampling method as covariates of detection probabilities also had higher support. Detection probability estimates for snorkeling surveys were higher for larger non-benthic species whereas electrofishing was more effective at detecting smaller benthic species. The number of sites and sampling occasions required to accurately estimate occupancy varied among fish species. For rare benthic species, our results suggested that higher number of occasions, and especially the addition of electrofishing, may be required to improve detection probabilities and obtain accurate occupancy estimates. Community models suggested that richness was 41% higher than the number of species actually observed and the addition of an electrofishing survey increased estimated richness by 13%. These results can be useful to future fish assemblage monitoring efforts by informing sampling designs, such as site selection (e.g. stratifying based on patch size) and determining effort required (e.g. number of

  15. Evaluation of misplaced event count rate using a scintillation camera

    International Nuclear Information System (INIS)

    Yanagimoto, Shin-ichi; Tomomitsu, Tatsushi; Muranaka, Akira

    1985-01-01

    Misplaced event count rates were evaluated using an acryl scatter body of various thickness and a gamma camera. The count rate in the region of interest (ROI) within the camera view field, which was thought to represent part of the misplaced event count rate, increased as the thickness of the scatter body was increased to 5 cm, followed by a steep decline in the count rate. On the other hand, the ratio of the count rate in the ROI to the total count rate continuously increased as the thickness of the scatter body was increased. As the thickness of the scatter body was increased, the count rates increased, and the increments of increase were greater in the lower energy region of the photopeak than in the higher energy region. In ranges energy other than the photopeak, the influence of the scatter body on the count rate in the ROI was the greatest at 76 keV, which was the lowest energy we examined. (author)

  16. New aerial survey and hierarchical model to estimate manatee abundance

    Science.gov (United States)

    Langimm, Cahterine A.; Dorazio, Robert M.; Stith, Bradley M.; Doyle, Terry J.

    2011-01-01

    Monitoring the response of endangered and protected species to hydrological restoration is a major component of the adaptive management framework of the Comprehensive Everglades Restoration Plan. The endangered Florida manatee (Trichechus manatus latirostris) lives at the marine-freshwater interface in southwest Florida and is likely to be affected by hydrologic restoration. To provide managers with prerestoration information on distribution and abundance for postrestoration comparison, we developed and implemented a new aerial survey design and hierarchical statistical model to estimate and map abundance of manatees as a function of patch-specific habitat characteristics, indicative of manatee requirements for offshore forage (seagrass), inland fresh drinking water, and warm-water winter refuge. We estimated the number of groups of manatees from dual-observer counts and estimated the number of individuals within groups by removal sampling. Our model is unique in that we jointly analyzed group and individual counts using assumptions that allow probabilities of group detection to depend on group size. Ours is the first analysis of manatee aerial surveys to model spatial and temporal abundance of manatees in association with habitat type while accounting for imperfect detection. We conducted the study in the Ten Thousand Islands area of southwestern Florida, USA, which was expected to be affected by the Picayune Strand Restoration Project to restore hydrology altered for a failed real-estate development. We conducted 11 surveys in 2006, spanning the cold, dry season and warm, wet season. To examine short-term and seasonal changes in distribution we flew paired surveys 1–2 days apart within a given month during the year. Manatees were sparsely distributed across the landscape in small groups. Probability of detection of a group increased with group size; the magnitude of the relationship between group size and detection probability varied among surveys. Probability

  17. Counting Knights and Knaves

    Science.gov (United States)

    Levin,Oscar; Roberts, Gerri M.

    2013-01-01

    To understand better some of the classic knights and knaves puzzles, we count them. Doing so reveals a surprising connection between puzzles and solutions, and highlights some beautiful combinatorial identities.

  18. Determining Gate Count Reliability in a Library Setting

    Directory of Open Access Journals (Sweden)

    Jeffrey Phillips

    2016-09-01

    Full Text Available Objective – Patron counts are a common form of measurement for library assessment. To develop accurate library statistics, it is necessary to determine any differences between various counting devices. A yearlong comparison between card reader turnstiles and laser gate counters in a university library sought to offer a standard percentage of variance and provide suggestions to increase the precision of counts. Methods – The collection of library exit counts identified the differences between turnstile and laser gate counter data. Statistical software helped to eliminate any inaccuracies in the collection of turnstile data, allowing this data set to be the base for comparison. Collection intervals were randomly determined and demonstrated periods of slow, average, and heavy traffic. Results – After analyzing 1,039,766 patron visits throughout a year, the final totals only showed a difference of .43% (.0043 between the two devices. The majority of collection periods did not exceed a difference of 3% between the counting instruments. Conclusion – Turnstiles card readers and laser gate counters provide similar levels of reliability when measuring patron activity. Each system has potential counting inaccuracies, but several methods exist to create more precise totals. Turnstile card readers are capable of offering greater detail involving patron identity, but their high cost makes them inaccessible for libraries with lower budgets. This makes laser gate counters an affordable alternative for reliable patron counting in an academic library.

  19. Genome Replikin Count Predicts Increased Infectivity/Lethality of Viruses

    OpenAIRE

    Samuel Bogoch; Elenore S. Bogoch

    2012-01-01

    The genomes of all groups of viruses whose sequences are listed on Pubmed, specimens since 1918, analyzed by a software from Bioradar UK Ltd., contain Replikins which range in concentration from a Replikin Count (number of Replikins per 100 amino acids) of less than 1 to 30 (see accompanying communications for higher Counts in tuberculosis, malaria, and cancer, associated with higher lethality). Counts of less than 4.0 were found in ‘resting’ virus states; Counts greater than 4....

  20. CHROMOSOMES OF WOODY SPECIES

    Directory of Open Access Journals (Sweden)

    Julio R Daviña

    2000-01-01

    Full Text Available Chromosome numbers of nine subtropical woody species collected in Argentina and Paraguay are reported. The counts tor Coutarea hexandra (2n=52, Inga vera subsp. affinis 2n=26 (Fabaceae and Chorisia speciosa 2n=86 (Bombacaceae are reported for the first time. The chromosome number given for Inga semialata 2n=52 is a new cytotype different from the previously reported. Somatic chromosome numbers of the other taxa studied are: Sesbania punicea 2n=12, S. virgata 2n=12 and Pilocarpus pennatifolius 2n=44 from Argentina

  1. Effects of plutonium redistribution on lung counting

    International Nuclear Information System (INIS)

    Swinth, K.L.

    1976-01-01

    Early counts of Pu deposition in lungs will tend to overestimate lung contents since calibrations are performed with a uniform distribution and since a more favorable geometry exists in contaminated subjects because the activity is closer to the periphery of the lungs. Although the concentration into the outer regions of the lungs continues as evidenced by the autopsy studies, the counts performed by L X-rays will probably underestimate the lung content; because, simplistically, the geometry several years after exposure consists of a spherical shell with a point of activity in the center. This point of activity represents concentration in the lymph nodes from which the 60 keV gamma of 241 Am will be counted, but from which few of the L X-rays will be counted (this is an example of interorgan distribution). When a correction is made to the L X-ray intensity, the lymph node contribution will tend to increase the amount subtracted while correcting for 241 Am X-rays. It is doubtful that the relative increase in X-ray intensity by concentration in the pleural and sub-pleural regions will compensate for this effect. This will make the plutonium burden disappear while the 241 Am can still be detected. This effect has been observed in a case where counts with an intraesophageal probe indicated a substantial lymph node burden. In order to improve the accuracy of in vivo plutonium measurements, an improved understanding of pulmonary distribution and of distribution effects on in vivo counting are required

  2. The luminosity function for different morphological types in the CfA Redshift Survey

    Science.gov (United States)

    Marzke, Ronald O.; Geller, Margaret J.; Huchra, John P.; Corwin, Harold G., Jr.

    1994-01-01

    We derive the luminosity function for different morphological types in the original CfA Redshift Survey (CfA1) and in the first two slices of the CfA Redshift Survey Extension (CfA2). CfA1 is a complete sample containing 2397 galaxies distributed over 2.7 steradians with m(sub z) less than or equal 14.5. The first two complete slices of CfA2 contain 1862 galaxies distributed over 0.42 steradians with m(sub z)=15.5. The shapes of the E-S0 and spiral luminosity functions (LF) are indistinguishable. We do not confirm the steeply decreasing faint end in the E-S0 luminosity function found by Loveday et al. for an independent sample in the southern hemisphere. We demonstrate that incomplete classification in deep redshift surveys can lead to underestimates of the faint end of the elliptical luminosity function and could be partially responsible for the difference between the CfA survey and other local field surveys. The faint end of the LF for the Magellanic spirals and irregulars is very steep. The Sm-Im luminosity function is well fit by a Schechter function with M*=-18.79, alpha=-1.87, and phi*=0.6x10(exp -3) for M(sub z) less than or equal to -13. These galaxies are largely responsible for the excess at the faint end of the general CfA luminosity function. The abundance of intrinsically faint, blue galaxies nearby affects the interpretation of deep number counts. The dwarf population increases the expected counts at B=25 in a no-evolution, q(sub 0)=0.05 model by a factor of two over standard no-evolution estimates. These dwarfs change the expected median redshift in deep redshift surveys by less than 10 percent . Thus the steep Sm-Im LF may contribute to the reconciliation of deep number counts with deep redshift surveys.

  3. Use of pliable bags in liquid scintillation counting

    International Nuclear Information System (INIS)

    Simonnet, G.; Jacquet, M.A.; Sharif, A.; Engler, R.

    1981-01-01

    Pliable plastic bags have been used to replace glass or plastic vials for liquid scintillation counting. The two major advantages of this method are the lower cost of the plastic bags and the fact that, per sample, the radioactive waste is significantly reduced. The following parameters have been checked: the impermeability of the bags to various scintillator mixtures and the fact that neither the irregular shape of the bags nor their position in the counting chamber had any effect on the results of the counting. The latter was also constant with time, at least over a period of 10 days. The technique has been used to count the radioactivity of 3 H-DNA precipitates prepared from bacteria and lymphocytes and deposited on filters impregnated with only 200 μl scintillator. It is a method that can be applied to the counting of any samples deposited on filters and insoluble in scintillator. (author)

  4. System and method of liquid scintillation counting

    International Nuclear Information System (INIS)

    Rapkin, E.

    1977-01-01

    A method of liquid scintillation counting utilizing a combustion step to overcome quenching effects comprises novel features of automatic sequential introduction of samples into a combustion zone and automatic sequential collection and delivery of combustion products into a counting zone. 37 claims, 13 figures

  5. BMI in relation to sperm count

    DEFF Research Database (Denmark)

    Sermondade, N; Faure, C; Fezeu, L

    2013-01-01

    BACKGROUND The global obesity epidemic has paralleled a decrease in semen quality. Yet, the association between obesity and sperm parameters remains controversial. The purpose of this report was to update the evidence on the association between BMI and sperm count through a systematic review...... with meta-analysis. METHODS A systematic review of available literature (with no language restriction) was performed to investigate the impact of BMI on sperm count. Relevant studies published until June 2012 were identified from a Pubmed and EMBASE search. We also included unpublished data (n = 717 men...... studies were included in the meta-analysis, resulting in a sample of 13 077 men from the general population and attending fertility clinics. Data were stratified according to the total sperm count as normozoospermia, oligozoospermia and azoospermia. Standardized weighted mean differences in sperm...

  6. Evaluating the ability of regional models to predict local avian abundance

    Science.gov (United States)

    LeBrun, Jaymi J.; Thogmartin, Wayne E.; Miller, James R.

    2012-01-01

    Spatial modeling over broad scales can potentially direct conservation efforts to areas with high species-specific abundances. We examined the performance of regional models for predicting bird abundance at spatial scales typically addressed in conservation planning. Specifically, we used point count data on wood thrush (Hylocichla mustelina) and blue-winged warbler (Vermivora cyanoptera) from 2 time periods (1995-1998 and 2006-2007) to evaluate the ability of regional models derived via Bayesian hierarchical techniques to predict bird abundance. We developed models for each species within Bird Conservation Region (BCR) 23 in the upper midwestern United States at 800-ha, 8,000-ha, and approximately 80,000-ha scales. We obtained count data from the Breeding Bird Survey and land cover data from the National Land Cover Dataset (1992). We evaluated predictions from the best models, as defined by an information-theoretic criterion, using point count data collected within an ecological subregion of BCR 23 at 131 count stations in the 1990s and again in 2006-2007. Competing (Deviance Information Criteria rs = 0.57; P = 0.14), the survey period that most closely aligned with the time period of data used for regional model construction. Wood thrush models exhibited positive correlations with point count data for all survey areas and years combined (rs = 0.58, P ≤ 0.001). In comparison, blue-winged warbler models performed worse as time increased between the point count surveys and vintage of the model building data (rs = 0.03, P = 0.92 for Iowa and rs = 0.13, P = 0.51 for all areas, 2006-2007), likely related to the ephemeral nature of their preferred early successional habitat. Species abundance and sensitivity to changing habitat conditions seems to be an important factor in determining the predictive ability of regional models. Hierarchical models can be a useful tool for concentrating efforts at the scale of management units and should be one of many tools used by

  7. Confusion-limited extragalactic source survey at 4.755 GHz. I. Source list and areal distributions

    International Nuclear Information System (INIS)

    Ledden, J.E.; Broderick, J.J.; Condon, J.J.; Brown, R.L.

    1980-01-01

    A confusion-limited 4.755-GHz survey covering 0.00 956 sr between right ascensions 07/sup h/05/sup m/ and 18/sup h/ near declination +35 0 has been made with the NRAO 91-m telescope. The survey found 237 sources and is complete above 15 mJy. Source counts between 15 and 100 mJy were obtained directly. The P(D) distribution was used to determine the number counts between 0.5 and 13.2 mJy, to search for anisotropy in the density of faint extragalactic sources, and to set a 99%-confidence upper limit of 1.83 mK to the rms temperature fluctuation of the 2.7-K cosmic microwave background on angular scales smaller than 7.3 arcmin. The discrete-source density, normalized to the static Euclidean slope, falls off sufficiently rapidly below 100 mJy that no new population of faint flat-spectrum sources is required to explain the 4.755-GHz source counts

  8. A two-phase sampling design for increasing detections of rare species in occupancy surveys

    Science.gov (United States)

    Pacifici, Krishna; Dorazio, Robert M.; Dorazio, Michael J.

    2012-01-01

    1. Occupancy estimation is a commonly used tool in ecological studies owing to the ease at which data can be collected and the large spatial extent that can be covered. One major obstacle to using an occupancy-based approach is the complications associated with designing and implementing an efficient survey. These logistical challenges become magnified when working with rare species when effort can be wasted in areas with none or very few individuals. 2. Here, we develop a two-phase sampling approach that mitigates these problems by using a design that places more effort in areas with higher predicted probability of occurrence. We compare our new sampling design to traditional single-season occupancy estimation under a range of conditions and population characteristics. We develop an intuitive measure of predictive error to compare the two approaches and use simulations to assess the relative accuracy of each approach. 3. Our two-phase approach exhibited lower predictive error rates compared to the traditional single-season approach in highly spatially correlated environments. The difference was greatest when detection probability was high (0·75) regardless of the habitat or sample size. When the true occupancy rate was below 0·4 (0·05-0·4), we found that allocating 25% of the sample to the first phase resulted in the lowest error rates. 4. In the majority of scenarios, the two-phase approach showed lower error rates compared to the traditional single-season approach suggesting our new approach is fairly robust to a broad range of conditions and design factors and merits use under a wide variety of settings. 5. Synthesis and applications. Conservation and management of rare species are a challenging task facing natural resource managers. It is critical for studies involving rare species to efficiently allocate effort and resources as they are usually of a finite nature. We believe our approach provides a framework for optimal allocation of effort while

  9. Designing primers and evaluation of the efficiency of propidium monoazide - Quantitative polymerase chain reaction for counting the viable cells of Lactobacillus gasseri and Lactobacillus salivarius.

    Science.gov (United States)

    Lai, Chieh-Hsien; Wu, Sih-Rong; Pang, Jen-Chieh; Ramireddy, Latha; Chiang, Yu-Cheng; Lin, Chien-Ku; Tsen, Hau-Yang

    2017-07-01

    The purpose of this study is to evaluate the efficiency of using propidium monoazide (PMA) real-time quantitative polymerase chain reaction (qPCR) to count the viable cells of Lactobacillus gasseri and Lactobacillus salivarius in probiotic products. Based on the internal transcription spacer and 23S rRNA genes, two primer sets specific for these two Lactobacillus species were designed. For a probiotic product, the total deMan Rogosa Sharpe plate count was 8.65±0.69 log CFU/g, while for qPCR, the cell counts of L. gasseri and L. salivarius were 8.39±0.14 log CFU/g and 8.57±0.24 log CFU/g, respectively. Under the same conditions, for its heat-killed product, qPCR counts for L. gasseri and L. salivarius were 6.70±0.16 log cells/g and 7.67±0.20 log cells/g, while PMA-qPCR counts were 5.33±0.18 log cells/g and 5.05±0.23 log cells/g, respectively. For cell dilutions with a viable cell count of 8.5 log CFU/mL for L. gasseri and L. salivarius, after heat killing, the PMA-qPCR count for both Lactobacillus species was near 5.5 log cells/mL. When the PMA-qPCR counts of these cell dilutions were compared before and after heat killing, although some DNA might be lost during the heat killing, significant qPCR signals from dead cells, i.e., about 4-5 log cells/mL, could not be reduced by PMA treatment. Increasing PMA concentrations from 100 μM to 200 μM or light exposure time from 5 minutes to 15 minutes had no or, if any, only minor effect on the reduction of qPCR signals from their dead cells. Thus, to differentiate viable lactic acid bacterial cells from dead cells using the PMA-qPCR method, the efficiency of PMA to reduce the qPCR signals from dead cells should be notable. Copyright © 2016. Published by Elsevier B.V.

  10. Analysis of General Power Counting Rules in Effective Field Theory

    CERN Document Server

    Gavela, B M; Manohar, A V; Merlo, L

    2016-01-01

    We derive the general counting rules for a quantum effective field theory (EFT) in $\\mathsf{d}$ dimensions. The rules are valid for strongly and weakly coupled theories, and predict that all kinetic energy terms are canonically normalized. They determine the energy dependence of scattering cross sections in the range of validity of the EFT expansion. The size of cross sections is controlled by the $\\Lambda$ power counting of EFT, not by chiral counting, even for chiral perturbation theory ($\\chi$PT). The relation between $\\Lambda$ and $f$ is generalized to $\\mathsf{d}$ dimensions. We show that the naive dimensional analysis $4\\pi$ counting is related to $\\hbar$ counting. The EFT counting rules are applied to $\\chi$PT, to Standard Model EFT and to the non-trivial case of Higgs EFT, which combines the $\\Lambda$ and chiral counting rules within a single theory.

  11. Atmospheric mold spore counts in relation to meteorological parameters

    Science.gov (United States)

    Katial, R. K.; Zhang, Yiming; Jones, Richard H.; Dyer, Philip D.

    Fungal spore counts of Cladosporium, Alternaria, and Epicoccum were studied during 8 years in Denver, Colorado. Fungal spore counts were obtained daily during the pollinating season by a Rotorod sampler. Weather data were obtained from the National Climatic Data Center. Daily averages of temperature, relative humidity, daily precipitation, barometric pressure, and wind speed were studied. A time series analysis was performed on the data to mathematically model the spore counts in relation to weather parameters. Using SAS PROC ARIMA software, a regression analysis was performed, regressing the spore counts on the weather variables assuming an autoregressive moving average (ARMA) error structure. Cladosporium was found to be positively correlated (Pmodel was derived for Cladosporium spore counts using the annual seasonal cycle and significant weather variables. The model for Alternaria and Epicoccum incorporated the annual seasonal cycle. Fungal spore counts can be modeled by time series analysis and related to meteorological parameters controlling for seasonallity; this modeling can provide estimates of exposure to fungal aeroallergens.

  12. Pixel-Cluster Counting Luminosity Measurement in ATLAS

    CERN Document Server

    McCormack, William Patrick; The ATLAS collaboration

    2016-01-01

    A precision measurement of the delivered luminosity is a key component of the ATLAS physics program at the Large Hadron Collider (LHC). A fundamental ingredient of the strategy to control the systematic uncertainties affecting the absolute luminosity has been to compare the measurements of several luminometers, most of which use more than one counting technique. The level of consistency across the various methods provides valuable cross-checks as well as an estimate of the detector-related systematic uncertainties. This poster describes the development of a luminosity algorithm based on pixel-cluster counting in the recently installed ATLAS inner b-layer (IBL), using data recorded during the 2015 pp run at the LHC. The noise and background contamination of the luminosity-associated cluster count is minimized by a multi-component fit to the measured cluster-size distribution in the forward pixel modules of the IBL. The linearity, long-term stability and statistical precision of the cluster-counting method are ...

  13. Pixel-Cluster Counting Luminosity Measurement In ATLAS

    CERN Document Server

    AUTHOR|(SzGeCERN)782710; The ATLAS collaboration

    2017-01-01

    A precision measurement of the delivered luminosity is a key component of the ATLAS physics program at the Large Hadron Collider (LHC). A fundamental ingredient of the strategy to control the systematic uncertainties affecting the absolute luminosity has been to compare the measure- ments of several luminometers, most of which use more than one counting technique. The level of consistency across the various methods provides valuable cross-checks as well as an estimate of the detector-related systematic uncertainties. This poster describes the development of a luminosity algorithm based on pixel-cluster counting in the recently installed ATLAS inner b-layer (IBL), using data recorded during the 2015 pp run at the LHC. The noise and background contamination of the luminosity-associated cluster count is minimized by a multi-component fit to the measured cluster-size distribution in the forward pixel modules of the IBL. The linearity, long-term stability and statistical precision of the cluster- counting method a...

  14. Environmental Survey Report for ORNL: Small Mammal Abundance and Distribution Survey Oak Ridge National Environmental Research Park 2009 - 2010

    Energy Technology Data Exchange (ETDEWEB)

    Giffen, Neil R [ORNL; Reasor, R. Scott [Oak Ridge Institute for Science and Education (ORISE); Campbell, Claire L. [Oak Ridge Institute for Science and Education (ORISE)

    2009-12-01

    This report summarizes a 1-year small mammal biodiversity survey conducted on the Oak Ridge National Environmental Research Park (OR Research Park). The task was implemented through the Oak Ridge National Laboratory (ORNL) Natural Resources Management Program and included researchers from the ORNL Environmental Sciences Division, interns in the Oak Ridge Institute for Science and Education Higher Education Research Experiences Program, and ORNL Environmental Protection Services staff. Eight sites were surveyed reservation wide. The survey was conducted in an effort to determine species abundance and diversity of small mammal populations throughout the reservation and to continue the historical inventory of small mammal presence for biodiversity records. This data collection effort was in support of the approved Wildlife Management Plan for the Oak Ridge Reservation, a major goal of which is to maintain and enhance wildlife biodiversity on the Reservation. Three of the sites (Poplar Creek, McNew Hollow, and Deer Check Station Field) were previously surveyed during a major natural resources inventory conducted in 1996. Five new sites were included in this study: Bearden Creek, Rainy Knob (Natural Area 21), Gum Hollow, White Oak Creek and Melton Branch. The 2009-2010 small mammal surveys were conducted from June 2009 to July 2010 on the Oak Ridge National Environmental Research Park (OR Research Park). The survey had two main goals: (1) to determine species abundance and diversity and (2) to update historical records on the OR Research Park. The park is located on the Department of Energy-owned Oak Ridge Reservation, which encompasses 13,580 ha. The primary focus of the study was riparian zones. In addition to small mammal sampling, vegetation and coarse woody debris samples were taken at certain sites to determine any correlations between habitat and species presence. During the survey all specimens were captured and released using live trapping techniques including

  15. AFSC/NMML: Beluga whale Counts from Aerial Surveys in Cook Inlet, Alaska, 1993-2014

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The National Marine Mammal Laboratory conducted aerial surveys to monitor the abundance and distribution of beluga whales in Cook Inlet, Alaska. This database...

  16. Cluster cosmology with next-generation surveys.

    Science.gov (United States)

    Ascaso, B.

    2017-03-01

    The advent of next-generation surveys will provide a large number of cluster detections that will serve the basis for constraining cos mological parameters using cluster counts. The main two observational ingredients needed are the cluster selection function and the calibration of the mass-observable relation. In this talk, we present the methodology designed to obtain robust predictions of both ingredients based on realistic cosmological simulations mimicking the following next-generation surveys: J-PAS, LSST and Euclid. We display recent results on the selection functions for these mentioned surveys together with others coming from other next-generation surveys such as eROSITA, ACTpol and SPTpol. We notice that the optical and IR surveys will reach the lowest masses between 0.3surveys and introduce very preliminary results.

  17. Investigation of reduction in background counts of clover detector

    International Nuclear Information System (INIS)

    Kshetri, Ritesh

    2015-01-01

    The peak-to-total ratio can be improved by increasing the full energy peak (FEP) counts and/or by decreasing the background counts. It is notable that FEP counts will be effected by mode of operation, while background counts will be effected by both modes of operation and suppression cases. It would be interesting to know if the reduction in background is caused more by active suppression or by add back process. We introduce a simple formalism to investigate the reduction of background counts for different cases-single crystal or add back mode with active or passive suppression. A more sophisticated formalism for modeling a general composite detector had been presented in a series of six recent papers by the author

  18. Quantification of different Eubacterium spp. in human fecal samples with species-specific 16S rRNA-targeted oligonucleotide probes.

    Science.gov (United States)

    Schwiertz, A; Le Blay, G; Blaut, M

    2000-01-01

    Species-specific 16S rRNA-targeted, Cy3 (indocarbocyanine)-labeled oligonucleotide probes were designed and validated to quantify different Eubacterium species in human fecal samples. Probes were directed at Eubacterium barkeri, E. biforme, E. contortum, E. cylindroides (two probes), E. dolichum, E. hadrum, E. lentum, E. limosum, E. moniliforme, and E. ventriosum. The specificity of the probes was tested with the type strains and a range of common intestinal bacteria. With one exception, none of the probes showed cross-hybridization under stringent conditions. The species-specific probes were applied to fecal samples obtained from 12 healthy volunteers. E. biforme, E. cylindroides, E. hadrum, E. lentum, and E. ventriosum could be determined. All other Eubacterium species for which probes had been designed were under the detection limit of 10(7) cells g (dry weight) of feces(-1). The cell counts obtained are essentially in accordance with the literature data, which are based on colony counts. This shows that whole-cell in situ hybridization with species-specific probes is a valuable tool for the enumeration of Eubacterium species in feces.

  19. Surveyable Representations, the "Lecture on Ethics", and Moral Philosophy

    Directory of Open Access Journals (Sweden)

    Benjamin De Mesel

    2014-12-01

    Full Text Available I argue that it is possible and useful for moral philosophy to provide surveyable representations (as the later Wittgenstein understands the concept of moral vocabulary. I proceed in four steps. First, I present two dominant interpretations of the concept “surveyable representation”. Second, I use these interpretations as a background against which I present my own interpretation. Third, I use my interpretation to support the claim that Wittgenstein’s “Lecture on Ethics” counts as an example of a surveyable representation. I conclude that, since the lecture qualifies as a surveyable representation, it is possible to provide surveyable representations of moral vocabulary. Fourth, I argue that it is useful for contemporary moral philosophy to provide surveyable representations, because it may help to dissolve problems in current debates. I provide an example of such a debate, namely, the debate between cognitivists and non-cognivitists.

  20. Multiple sample, radioactive particle counting apparatus

    International Nuclear Information System (INIS)

    Reddy, R.R.V.; Kelso, D.M.

    1978-01-01

    An apparatus is described for determining the respective radioactive particle sample count being emitted from radioactive particle containing samples. It includes means for modulating the information on the radioactive particles being emitted from the samples, coded detecting means for sequentially detecting different respective coded combinations of the radioactive particles emitted from more than one but less than all of the samples, and processing the modulated information to derive the sample count for each sample. It includes a single light emitting crystal next to a number of samples, an encoder belt sequentially movable between the crystal and the samples. The encoder belt has a coded array of apertures to provide corresponding modulated light pulses from the crystal, and a photomultiplier tube to convert the modulated light pulses to decodable electrical signals for deriving the respective sample count