Microbial biodiversity assessment of the European Space Agency's ExoMars 2016 mission.

Science.gov (United States)

Koskinen, Kaisa; Rettberg, Petra; Pukall, Rüdiger; Auerbach, Anna; Wink, Lisa; Barczyk, Simon; Perras, Alexandra; Mahnert, Alexander; Margheritis, Diana; Kminek, Gerhard; Moissl-Eichinger, Christine

2017-10-25

The ExoMars 2016 mission, consisting of the Trace Gas Orbiter and the Schiaparelli lander, was launched on March 14 2016 from Baikonur, Kazakhstan and reached its destination in October 2016. The Schiaparelli lander was subject to strict requirements for microbial cleanliness according to the obligatory planetary protection policy. To reach the required cleanliness, the ExoMars 2016 flight hardware was assembled in a newly built, biocontrolled cleanroom complex at Thales Alenia Space in Turin, Italy. In this study, we performed microbiological surveys of the cleanroom facilities and the spacecraft hardware before and during the assembly, integration and testing (AIT) activities. Besides the European Space Agency (ESA) standard bioburden assay, that served as a proxy for the microbiological contamination in general, we performed various alternative cultivation assays and utilised molecular techniques, including quantitative PCR and next generation sequencing, to assess the absolute and relative abundance and broadest diversity of microorganisms and their signatures in the cleanroom and on the spacecraft hardware. Our results show that the bioburden, detected microbial contamination and microbial diversity decreased continuously after the cleanroom was decontaminated with more effective cleaning agents and during the ongoing AIT. The studied cleanrooms and change room were occupied by very distinct microbial communities: Overall, the change room harboured a higher number and diversity of microorganisms, including Propionibacterium, which was found to be significantly increased in the change room. In particular, the so called alternative cultivation assays proved important in detecting a broader cultivable diversity than covered by the standard bioburden assay and thus completed the picture on the cleanroom microbiota. During the whole project, the bioburden stayed at acceptable level and did not raise any concern for the ExoMars 2016 mission. The cleanroom complex at

Survey of microbial degradation of asphalts with notes on relationship to nuclear waste management

International Nuclear Information System (INIS)

ZoBell, C.E.; Molecke, M.A.

1978-12-01

A survey has been made of the microbial degradation of asphalts. Topics covered include chemical and physical properties of asphalts, their chemical stability, methods of demonstrating their microbial degradation, and environmental extremes for microbial activity based on existing literature. Specific concerns for the use of asphalt in nuclear waste management, plus potential effects and consequences thereof are discussed. 82 references

Biodiversity of soil bacteria exposed to sub-lethal concentrations of phosphonium-based ionic liquids: Effects of toxicity and biodegradation.

Science.gov (United States)

Sydow, Mateusz; Owsianiak, Mikołaj; Framski, Grzegorz; Woźniak-Karczewska, Marta; Piotrowska-Cyplik, Agnieszka; Ławniczak, Łukasz; Szulc, Alicja; Zgoła-Grześkowiak, Agnieszka; Heipieper, Hermann J; Chrzanowski, Łukasz

2018-01-01

Little is known about the effect of ionic liquids (ILs) on the structure of soil microbial communities and resulting biodiversity. Therefore, we studied the influence of six trihexyl(tetradecyl)phosphonium ILs (with either bromide or various organic anions) at sublethal concentrations on the structure of microbial community present in an urban park soil in 100-day microcosm experiments. The biodiversity decreased in all samples (Shannon's index decreased from 1.75 down to 0.74 and OTU's number decreased from 1399 down to 965) with the largest decrease observed in the microcosms spiked with ILs where biodegradation extent was higher than 80%. (i.e. [P 66614 ][Br] and [P 66614 ][2,4,4]). Despite this general decrease in biodiversity, which can be explained by ecotoxic effect of the ILs, the microbial community in the microcosms was enriched with Gram-negative hydrocarbon-degrading genera e.g. Sphingomonas. It is hypothesized that, in addition to toxicity, the observed decrease in biodiversity and change in the microbial community structure may be explained by the primary biodegradation of the ILs or their metabolites by the mentioned genera, which outcompeted other microorganisms unable to degrade ILs or their metabolites. Thus, the introduction of phosphonium-based ILs into soils at sub-lethal concentrations may result not only in a decrease in biodiversity due to toxic effects, but also in enrichment with ILs-degrading bacteria. Copyright © 2017 Elsevier Inc. All rights reserved.

Conservation of biodiversity in the Sango Bay area, southern Uganda

African Journals Online (AJOL)

A series of biodiversity and socio-economic surveys carried out in the Sango Bay area of southern Uganda revealed high biodiversity values for some taxa in some sites. Use of this biodiversity and reliance on it by local communities was widespread. Biodiversity scores were given to all species and these were coupled with ...

Dormancy contributes to the maintenance of microbial diversity.

Science.gov (United States)

Jones, Stuart E; Lennon, Jay T

2010-03-30

Dormancy is a bet-hedging strategy used by a variety of organisms to overcome unfavorable environmental conditions. By entering a reversible state of low metabolic activity, dormant individuals become members of a seed bank, which can determine community dynamics in future generations. Although microbiologists have documented dormancy in both clinical and natural settings, the importance of seed banks for the diversity and functioning of microbial communities remains untested. Here, we develop a theoretical model demonstrating that microbial communities are structured by environmental cues that trigger dormancy. A molecular survey of lake ecosystems revealed that dormancy plays a more important role in shaping bacterial communities than eukaryotic microbial communities. The proportion of dormant bacteria was relatively low in productive ecosystems but accounted for up to 40% of taxon richness in nutrient-poor systems. Our simulations and empirical data suggest that regional environmental cues and dormancy synchronize the composition of active communities across the landscape while decoupling active microbes from the total community at local scales. Furthermore, we observed that rare bacterial taxa were disproportionately active relative to common bacterial taxa, suggesting that microbial rank-abundance curves are more dynamic than previously considered. We propose that repeated transitions to and from the seed bank may help maintain the high levels of microbial biodiversity that are observed in nearly all ecosystems.

Microbial biodiversity, quality and shelf life of microfiltered and pasteurized extended shelf life (ESL) milk from Germany, Austria and Switzerland.

Science.gov (United States)

Schmidt, Verena S J; Kaufmann, Veronika; Kulozik, Ulrich; Scherer, Siegfried; Wenning, Mareike

2012-03-01

Information on factors limiting the shelf life of extended shelf life (ESL) milk produced by microfiltration and subsequent pasteurization is very limited. In this study, three different batches of ESL milk were analyzed at different stages of the production process and during storage at 4 °C, 8 °C and 10 °C in order to evaluate the changes in bacterial cell counts, microbial diversity and enzymatic quality. Additionally, detailed biodiversity analyses of 250 retail ESL milk packages produced by five manufacturers in Germany, Austria and Switzerland were performed at the end of shelf life. It was observed that microfiltration decreased the microbial loads by 5-6 log₁₀ units to lower than 1 CFU/mL. However, bacterial counts at the end of shelf life were extremely variable and ranged between ESL treatment, causing stochastic variations of initial species distributions in individual packages. This would result in the development of significantly different bacterial populations during cold storage, including the occasional development of high numbers of pathogenic species such as B. cereus or Acinetobacter. Copyright © 2011 Elsevier B.V. All rights reserved.

Evaluating Temporal Consistency in Marine Biodiversity Hotspots.

Science.gov (United States)

Piacenza, Susan E; Thurman, Lindsey L; Barner, Allison K; Benkwitt, Cassandra E; Boersma, Kate S; Cerny-Chipman, Elizabeth B; Ingeman, Kurt E; Kindinger, Tye L; Lindsley, Amy J; Nelson, Jake; Reimer, Jessica N; Rowe, Jennifer C; Shen, Chenchen; Thompson, Kevin A; Heppell, Selina S

2015-01-01

With the ongoing crisis of biodiversity loss and limited resources for conservation, the concept of biodiversity hotspots has been useful in determining conservation priority areas. However, there has been limited research into how temporal variability in biodiversity may influence conservation area prioritization. To address this information gap, we present an approach to evaluate the temporal consistency of biodiversity hotspots in large marine ecosystems. Using a large scale, public monitoring dataset collected over an eight year period off the US Pacific Coast, we developed a methodological approach for avoiding biases associated with hotspot delineation. We aggregated benthic fish species data from research trawls and calculated mean hotspot thresholds for fish species richness and Shannon's diversity indices over the eight year dataset. We used a spatial frequency distribution method to assign hotspot designations to the grid cells annually. We found no areas containing consistently high biodiversity through the entire study period based on the mean thresholds, and no grid cell was designated as a hotspot for greater than 50% of the time-series. To test if our approach was sensitive to sampling effort and the geographic extent of the survey, we followed a similar routine for the northern region of the survey area. Our finding of low consistency in benthic fish biodiversity hotspots over time was upheld, regardless of biodiversity metric used, whether thresholds were calculated per year or across all years, or the spatial extent for which we calculated thresholds and identified hotspots. Our results suggest that static measures of benthic fish biodiversity off the US West Coast are insufficient for identification of hotspots and that long-term data are required to appropriately identify patterns of high temporal variability in biodiversity for these highly mobile taxa. Given that ecological communities are responding to a changing climate and other

Towards understanding, managing and protecting microbial ecosystems

Directory of Open Access Journals (Sweden)

Paul eBodelier

2011-04-01

Full Text Available Microbial communities are at the very basis of life on earth, catalysing biogeochemical reactions driving global nutrient cycles. However, unlike for plants and animals, microbial diversity is not on the biodiversity conservation agenda. The latter, however, would imply that microbial diversity is not under any threat by anthropogenic disturbance or climate change. This maybe a misconception caused by the rudimentary knowledge we have concerning microbial diversity and its role in ecosystem functioning. This perspective paper indentifies major areas with knowledge gaps within the field of environmental microbiology that preclude a comprehension of microbial ecosystems on the level we have for plants and animals. Opportunities and challenges are pointed out to open the microbial black box and to go from descriptive to predictive microbial ecology.

Toward understanding, managing, and protecting microbial ecosystems.

Science.gov (United States)

Bodelier, Paul L E

2011-01-01

Microbial communities are at the very basis of life on earth, catalyzing biogeochemical reactions driving global nutrient cycles. However, unlike for plants and animals, microbial diversity is not on the biodiversity-conservation agenda. The latter, however, would imply that microbial diversity is not under any threat by anthropogenic disturbance or climate change. This maybe a misconception caused by the rudimentary knowledge we have concerning microbial diversity and its role in ecosystem functioning. This perspective paper identifies major areas with knowledge gaps within the field of environmental microbiology that preclude a comprehension of microbial ecosystems on the level we have for plants and animals. Opportunities and challenges are pointed out to open the microbial black box and to go from descriptive to predictive microbial ecology.

77 FR 6820 - Proposed Information Collection; Comment Request: Creating Stewardship Through Biodiversity...

Science.gov (United States)

2012-02-09

... Information Collection; Comment Request: Creating Stewardship Through Biodiversity Discovery in National Parks... collection (IC) described below. This collection will survey participants of Biodiversity Discovery efforts... Biodiversity Discovery refers to a variety of efforts to discover living organisms through public involvement...

Biodiversity enhances reef fish biomass and resistance to climate change.

Science.gov (United States)

Duffy, J Emmett; Lefcheck, Jonathan S; Stuart-Smith, Rick D; Navarrete, Sergio A; Edgar, Graham J

2016-05-31

Fishes are the most diverse group of vertebrates, play key functional roles in aquatic ecosystems, and provide protein for a billion people, especially in the developing world. Those functions are compromised by mounting pressures on marine biodiversity and ecosystems. Because of its economic and food value, fish biomass production provides an unusually direct link from biodiversity to critical ecosystem services. We used the Reef Life Survey's global database of 4,556 standardized fish surveys to test the importance of biodiversity to fish production relative to 25 environmental drivers. Temperature, biodiversity, and human influence together explained 47% of the global variation in reef fish biomass among sites. Fish species richness and functional diversity were among the strongest predictors of fish biomass, particularly for the large-bodied species and carnivores preferred by fishers, and these biodiversity effects were robust to potentially confounding influences of sample abundance, scale, and environmental correlations. Warmer temperatures increased biomass directly, presumably by raising metabolism, and indirectly by increasing diversity, whereas temperature variability reduced biomass. Importantly, diversity and climate interact, with biomass of diverse communities less affected by rising and variable temperatures than species-poor communities. Biodiversity thus buffers global fish biomass from climate change, and conservation of marine biodiversity can stabilize fish production in a changing ocean.

Introducing SONS, a Tool for Operational Taxonomic Unit-Based Comparisons of Microbial Community Memberships and Structures

OpenAIRE

Schloss, Patrick D.; Handelsman, Jo

2006-01-01

The recent advent of tools enabling statistical inferences to be drawn from comparisons of microbial communities has enabled the focus of microbial ecology to move from characterizing biodiversity to describing the distribution of that biodiversity. Although statistical tools have been developed to compare community structures across a phylogenetic tree, we lack tools to compare the memberships and structures of two communities at a particular operational taxonomic unit (OTU) definition. Furt...

Road-networks, a practical indicator of human impacts on biodiversity in Tropical forests

International Nuclear Information System (INIS)

Hosaka, T; Yamada, T; Okuda, T

2014-01-01

Tropical forests sustain the most diverse plants and animals in the world, but are also being lost most rapidly. Rapid assessment and monitoring using remote sensing on biodiversity of tropical forests is needed to predict and evaluate biodiversity loss by human activities. Identification of reliable indicators of forest biodiversity and/or its loss is an urgent issue. In the present paper, we propose the density of road networks in tropical forests can be a good and practical indicator of human impacts on biodiversity in tropical forests through reviewing papers and introducing our preliminary survey in peninsular Malaysia. Many previous studies suggest a strong negative impact of forest roads on biodiversity in tropical rainforests since they changes microclimate, soil properties, drainage patterns, canopy openness and forest accessibility. Moreover, our preliminary survey also showed that even a narrow logging road (6 m wide) significantly lowered abundance of dung beetles (well-known bio-indicator in biodiversity survey in tropical forests) near the road. Since these road networks are readily to be detected with remote sensing approach such as aerial photographs and Lider, regulation and monitoring of the road networks using remote sensing techniques is a key to slow down the rate of biodiversity loss due to forest degradation in tropical forests

Road-networks, a practical indicator of human impacts on biodiversity in Tropical forests

Science.gov (United States)

Hosaka, T.; Yamada, T.; Okuda, T.

2014-02-01

Tropical forests sustain the most diverse plants and animals in the world, but are also being lost most rapidly. Rapid assessment and monitoring using remote sensing on biodiversity of tropical forests is needed to predict and evaluate biodiversity loss by human activities. Identification of reliable indicators of forest biodiversity and/or its loss is an urgent issue. In the present paper, we propose the density of road networks in tropical forests can be a good and practical indicator of human impacts on biodiversity in tropical forests through reviewing papers and introducing our preliminary survey in peninsular Malaysia. Many previous studies suggest a strong negative impact of forest roads on biodiversity in tropical rainforests since they changes microclimate, soil properties, drainage patterns, canopy openness and forest accessibility. Moreover, our preliminary survey also showed that even a narrow logging road (6 m wide) significantly lowered abundance of dung beetles (well-known bio-indicator in biodiversity survey in tropical forests) near the road. Since these road networks are readily to be detected with remote sensing approach such as aerial photographs and Lider, regulation and monitoring of the road networks using remote sensing techniques is a key to slow down the rate of biodiversity loss due to forest degradation in tropical forests.

Microbial ecology: new insights into the great wide-open culture independent sea

Science.gov (United States)

Microbial communities are the basis for most, if not all, biochemical or biogeochemical functions in the environment. These environments are vastly different with respect to matrix, function, and biodiversity, and as such, present minute to stark differences in their respective microbial communities...

Microbial Functional Gene Diversity Predicts Groundwater Contamination and Ecosystem Functioning.

Science.gov (United States)

He, Zhili; Zhang, Ping; Wu, Linwei; Rocha, Andrea M; Tu, Qichao; Shi, Zhou; Wu, Bo; Qin, Yujia; Wang, Jianjun; Yan, Qingyun; Curtis, Daniel; Ning, Daliang; Van Nostrand, Joy D; Wu, Liyou; Yang, Yunfeng; Elias, Dwayne A; Watson, David B; Adams, Michael W W; Fields, Matthew W; Alm, Eric J; Hazen, Terry C; Adams, Paul D; Arkin, Adam P; Zhou, Jizhong

2018-02-20

Contamination from anthropogenic activities has significantly impacted Earth's biosphere. However, knowledge about how environmental contamination affects the biodiversity of groundwater microbiomes and ecosystem functioning remains very limited. Here, we used a comprehensive functional gene array to analyze groundwater microbiomes from 69 wells at the Oak Ridge Field Research Center (Oak Ridge, TN), representing a wide pH range and uranium, nitrate, and other contaminants. We hypothesized that the functional diversity of groundwater microbiomes would decrease as environmental contamination (e.g., uranium or nitrate) increased or at low or high pH, while some specific populations capable of utilizing or resistant to those contaminants would increase, and thus, such key microbial functional genes and/or populations could be used to predict groundwater contamination and ecosystem functioning. Our results indicated that functional richness/diversity decreased as uranium (but not nitrate) increased in groundwater. In addition, about 5.9% of specific key functional populations targeted by a comprehensive functional gene array (GeoChip 5) increased significantly ( P contamination and ecosystem functioning. This study indicates great potential for using microbial functional genes to predict environmental contamination and ecosystem functioning. IMPORTANCE Disentangling the relationships between biodiversity and ecosystem functioning is an important but poorly understood topic in ecology. Predicting ecosystem functioning on the basis of biodiversity is even more difficult, particularly with microbial biomarkers. As an exploratory effort, this study used key microbial functional genes as biomarkers to provide predictive understanding of environmental contamination and ecosystem functioning. The results indicated that the overall functional gene richness/diversity decreased as uranium increased in groundwater, while specific key microbial guilds increased significantly as

Quantifying biodiversity and asymptotics for a sequence of random strings.

Science.gov (United States)

Koyano, Hitoshi; Kishino, Hirohisa

2010-06-01

We present a methodology for quantifying biodiversity at the sequence level by developing the probability theory on a set of strings. Further, we apply our methodology to the problem of quantifying the population diversity of microorganisms in several extreme environments and digestive organs and reveal the relation between microbial diversity and various environmental parameters.

The Hawaiian Rhodophyta Biodiversity Survey (2006-2010): a summary of principal findings.

Science.gov (United States)

Sherwood, Alison R; Kurihara, Akira; Conklin, Kimberly Y; Sauvage, Thomas; Presting, Gernot G

2010-11-22

The Hawaiian red algal flora is diverse, isolated, and well studied from a morphological and anatomical perspective, making it an excellent candidate for assessment using a combination of traditional taxonomic and molecular approaches. Acquiring and making these biodiversity data freely available in a timely manner ensures that other researchers can incorporate these baseline findings into phylogeographic studies of Hawaiian red algae or red algae found in other locations. A total of 1,946 accessions are represented in the collections from 305 different geographical locations in the Hawaiian archipelago. These accessions represent 24 orders, 49 families, 152 genera and 252 species/subspecific taxa of red algae. One order of red algae (the Rhodachlyales) was recognized in Hawaii for the first time and 196 new island distributional records were determined from the survey collections. One family and four genera are reported for the first time from Hawaii, and multiple species descriptions are in progress for newly discovered taxa. A total of 2,418 sequences were generated for Hawaiian red algae in the course of this study--915 for the nuclear LSU marker, 864 for the plastidial UPA marker, and 639 for the mitochondrial COI marker. These baseline molecular data are presented as neighbor-joining trees to illustrate degrees of divergence within and among taxa. The LSU marker was typically most conserved, followed by UPA and COI. Phylogenetic analysis of a set of concatenated LSU, UPA and COI sequences recovered a tree that broadly resembled the current understanding of florideophyte red algal relationships, but bootstrap support was largely absent above the ordinal level. Phylogeographic trends are reported here for some common taxa within the Hawaiian Islands and include examples of those with, as well as without, intraspecific variation. The UPA and COI markers were determined to be the most useful of the three and are recommended for inclusion in future algal

Microbial biogeography of San Francisco Bay sediments

Science.gov (United States)

Lee, J. A.; Francis, C. A.

2014-12-01

The largest estuary on the west coast of North America, San Francisco Bay is an ecosystem of enormous biodiversity, and also enormous human impact. The benthos has experienced dredging, occupation by invasive species, and over a century of sediment input as a result of hydraulic mining. Although the Bay's great cultural and ecological importance has inspired numerous surveys of the benthic macrofauna, to date there has been almost no investigation of the microbial communities on the Bay floor. An understanding of those microbial communities would contribute significantly to our understanding of both the biogeochemical processes (which are driven by the microbiota) and the physical processes (which contribute to microbial distributions) in the Bay. Here, we present the first broad survey of bacterial and archaeal taxa in the sediments of the San Francisco Bay. We conducted 16S rRNA community sequencing of bacteria and archaea in sediment samples taken bimonthly for one year, from five sites spanning the salinity gradient between Suisun and Central Bay, in order to capture the effect of both spatial and temporal environmental variation on microbial diversity. From the same samples we also conducted deep sequencing of a nitrogen-cycling functional gene, nirS, allowing an assessment of evolutionary diversity at a much finer taxonomic scale within an important and widespread functional group of bacteria. We paired these sequencing projects with extensive geochemical metadata as well as information about macrofaunal distribution. Our data reveal a diversity of distinct biogeographical patterns among different taxa: clades ubiquitous across sites; clades that respond to measurable environmental drivers; and clades that show geographical site-specificity. These community datasets allow us to test the hypothesis that salinity is a major driver of both overall microbial community structure and community structure of the denitrifying bacteria specifically; and to assess

Monitoring Biodiversity using Environmental DNA

DEFF Research Database (Denmark)

Thomsen, Philip Francis

DNA). Especially the advance in DNA sequencing technology has revolutionized this field and opened new frontiers in ecology, evolution and environmental sciences. Also, it is becoming a powerful tool for field biologist, with new and efficient methods for monitoring biodiversity. This thesis focuses on the use...... of eDNA in monitoring of biodiversity in different settings. First, it is shown that a diversity of rare freshwater animals – representing amphibians, fish, mammals, insects and crustaceans – can be detected based on eDNA obtained directly from 15 ml water samples of lakes, ponds and streams...... setting, showing that eDNA obtained directly from ½ l seawater samples can account for marine fish biodiversity using NGS. Promisingly, eDNA covered the fish diversity better than any of 9 methods, conventionally used in marine fish surveys. Additionally, it is shown that even short 100-bp. fish e...

The Hawaiian freshwater algae biodiversity survey (2009–2014): systematic and biogeographic trends with an emphasis on the macroalgae

Science.gov (United States)

2014-01-01

Background A remarkable range of environmental conditions is present in the Hawaiian Islands due to their gradients of elevation, rainfall and island age. Despite being well known as a location for the study of evolutionary processes and island biogeography, little is known about the composition of the non-marine algal flora of the archipelago, its degree of endemism, or affinities with other floras. We conducted a biodiversity survey of the non-marine macroalgae of the six largest main Hawaiian Islands using molecular and microscopic assessment techniques. We aimed to evaluate whether endemism or cosmopolitanism better explain freshwater algal distribution patterns, and provide a baseline data set for monitoring future biodiversity changes in the Hawaiian Islands. Results 1,786 aquatic and terrestrial habitats and 1,407 distinct collections of non-marine macroalgae were collected from the islands of Kauai, Oahu, Molokai, Maui, Lanai and Hawaii from the years 2009–2014. Targeted habitats included streams, wet walls, high elevation bogs, taro fields, ditches and flumes, lakes/reservoirs, cave walls and terrestrial areas. Sites that lacked freshwater macroalgae were typically terrestrial or wet wall habitats that were sampled for diatoms and other microalgae. Approximately 50% of the identifications were of green algae, with lesser proportions of diatoms, red algae, cyanobacteria, xanthophytes and euglenoids. 898 DNA sequences were generated representing eight different markers, which enabled an assessment of the number of taxonomic entities for genera collected as part of the survey. Forty-four well-characterized taxa were assessed for global distribution patterns. This analysis revealed no clear biogeographic affinities of the flora, with 27.3% characterized as “cosmopolitan”, 11.4% “endemic”, and 61.3% as intermediate. Conclusions The Hawaiian freshwater algal biodiversity survey represents the first comprehensive effort to characterize the non

The contribution of microbial biotechnology to mitigating coral reef degradation.

Science.gov (United States)

Damjanovic, Katarina; Blackall, Linda L; Webster, Nicole S; van Oppen, Madeleine J H

2017-09-01

The decline of coral reefs due to anthropogenic disturbances is having devastating impacts on biodiversity and ecosystem services. Here we highlight the potential and challenges of microbial manipulation strategies to enhance coral tolerance to stress and contribute to coral reef restoration and protection. © 2017 The Authors. Microbial Biotechnology published by John Wiley & Sons Ltd and Society for Applied Microbiology.

Contributions of understory and/or overstory vegetations to soil microbial PLFA and nematode diversities in Eucalyptus monocultures.

Directory of Open Access Journals (Sweden)

Jie Zhao

Full Text Available Ecological interactions between aboveground and belowground biodiversity have received many attentions in the recent decades. Although soil biodiversity declined with the decrease of plant diversity, many previous studies found plant species identities were more important than plant diversity in controlling soil biodiversity. This study focused on the responses of soil biodiversity to the altering of plant functional groups, namely overstory and understory vegetations, rather than plant diversity gradient. We conducted an experiment by removing overstory and/or understory vegetation to compare their effects on soil microbial phospholipid fatty acid (PLFA and nematode diversities in eucalyptus monocultures. Our results indicated that both overstory and understory vegetations could affect soil microbial PLFA and nematode diversities, which manifested as the decrease in Shannon-Wiener diversity index (H' and Pielou evenness index (J and the increase in Simpson dominance index (λ after vegetation removal. Soil microclimate change explained part of variance of soil biodiversity indices. Both overstory and understory vegetations positively correlated with soil microbial PLFA and nematode diversities. In addition, the alteration of soil biodiversity might be due to a mixing effect of bottom-up control and soil microclimate change after vegetation removal in the studied plantations. Given the studied ecosystem is common in humid subtropical and tropical region of the world, our findings might have great potential to extrapolate to large scales and could be conducive to ecosystem management and service.

Building a discovery partnership with Sarawak Biodiversity Centre: a gateway to access natural products from the rainforests.

Science.gov (United States)

Yeo, Tiong Chia; Naming, Margarita; Manurung, Rita

2014-03-01

The Sarawak Biodiversity Centre (SBC) is a state government agency which regulates research and promotes the sustainable use of biodiversity. It has a program on documentation of traditional knowledge (TK) and is well-equipped with facilities for natural product research. SBC maintains a Natural Product Library (NPL) consisting of local plant and microbial extracts for bioprospecting. The NPL is a core discovery platform for screening of bioactive compounds by researchers through a formal agreement with clear benefit sharing obligations. SBC aims to develop partnerships with leading institutions and the industries to explore the benefits of biodiversity.

Random survey of the microbial quality of bottled water in South Africa

African Journals Online (AJOL)

Random survey of the microbial quality of bottled water in South Africa. Marthie M Ehlers, Walda B Van Zyl, Dobromir N Pavlov, Etienne E Muller. Abstract. Due to the increased demand and consumption of bottled water in South Africa, there has been a growing concern about the microbiological quality of this product.

Biodiversity maintenance in food webs with regulatory environmental feedbacks.

Science.gov (United States)

Bagdassarian, Carey K; Dunham, Amy E; Brown, Christopher G; Rauscher, Daniel

2007-04-21

Although the food web is one of the most fundamental and oldest concepts in ecology, elucidating the strategies and structures by which natural communities of species persist remains a challenge to empirical and theoretical ecologists. We show that simple regulatory feedbacks between autotrophs and their environment when embedded within complex and realistic food-web models enhance biodiversity. The food webs are generated through the niche-model algorithm and coupled with predator-prey dynamics, with and without environmental feedbacks at the autotroph level. With high probability and especially at lower, more realistic connectance levels, regulatory environmental feedbacks result in fewer species extinctions, that is, in increased species persistence. These same feedback couplings, however, also sensitize food webs to environmental stresses leading to abrupt collapses in biodiversity with increased forcing. Feedback interactions between species and their material environments anchor food-web persistence, adding another dimension to biodiversity conservation. We suggest that the regulatory features of two natural systems, deep-sea tubeworms with their microbial consortia and a soil ecosystem manifesting adaptive homeostatic changes, can be embedded within niche-model food-web dynamics.

The Hawaiian Rhodophyta Biodiversity Survey (2006-2010: a summary of principal findings

Directory of Open Access Journals (Sweden)

Conklin Kimberly Y

2010-11-01

Full Text Available Abstract Background The Hawaiian red algal flora is diverse, isolated, and well studied from a morphological and anatomical perspective, making it an excellent candidate for assessment using a combination of traditional taxonomic and molecular approaches. Acquiring and making these biodiversity data freely available in a timely manner ensures that other researchers can incorporate these baseline findings into phylogeographic studies of Hawaiian red algae or red algae found in other locations. Results A total of 1,946 accessions are represented in the collections from 305 different geographical locations in the Hawaiian archipelago. These accessions represent 24 orders, 49 families, 152 genera and 252 species/subspecific taxa of red algae. One order of red algae (the Rhodachlyales was recognized in Hawaii for the first time and 196 new island distributional records were determined from the survey collections. One family and four genera are reported for the first time from Hawaii, and multiple species descriptions are in progress for newly discovered taxa. A total of 2,418 sequences were generated for Hawaiian red algae in the course of this study - 915 for the nuclear LSU marker, 864 for the plastidial UPA marker, and 639 for the mitochondrial COI marker. These baseline molecular data are presented as neighbor-joining trees to illustrate degrees of divergence within and among taxa. The LSU marker was typically most conserved, followed by UPA and COI. Phylogenetic analysis of a set of concatenated LSU, UPA and COI sequences recovered a tree that broadly resembled the current understanding of florideophyte red algal relationships, but bootstrap support was largely absent above the ordinal level. Phylogeographic trends are reported here for some common taxa within the Hawaiian Islands and include examples of those with, as well as without, intraspecific variation. Conclusions The UPA and COI markers were determined to be the most useful of the three

Microbial ecology of mountain glacier ecosystems: biodiversity, ecological connections and implications of a warming climate.

Science.gov (United States)

Hotaling, Scott; Hood, Eran; Hamilton, Trinity L

2017-08-01

Glacier ecosystems are teeming with life on, beneath, and to a lesser degree, within their icy masses. This conclusion largely stems from polar research, with less attention paid to mountain glaciers that overlap environmentally and ecologically with their polar counterparts in some ways, but diverge in others. One difference lies in the susceptibility of mountain glaciers to the near-term threat of climate change, as they tend to be much smaller in both area and volume. Moreover, mountain glaciers are typically steeper, more dependent upon basal sliding for movement, and experience higher seasonal precipitation. Here, we provide a modern synthesis of the microbial ecology of mountain glacier ecosystems, and particularly those at low- to mid-latitudes. We focus on five ecological zones: the supraglacial surface, englacial interior, subglacial bedrock-ice interface, proglacial streams and glacier forefields. For each, we discuss the role of microbiota in biogeochemical cycling and outline ecological and hydrological connections among zones, underscoring the interconnected nature of these ecosystems. Collectively, we highlight the need to: better document the biodiversity and functional roles of mountain glacier microbiota; describe the ecological implications of rapid glacial retreat under climate change and resolve the relative contributions of ecological zones to broader ecosystem function. © 2017 The Authors. Environmental Microbiology published by Society for Applied Microbiology and John Wiley & Sons Ltd.

The biodiversity of microbial cytochromes P450.

Science.gov (United States)

Kelly, Steven L; Lamb, David C; Jackson, Colin J; Warrilow, Andrew G; Kelly, Diane E

2003-01-01

The cytochrome P450 (CYP) superfamily of genes and proteins are well known for their involvement in pharmacology and toxicology, but also increasingly for their importance and diversity in microbes. The extent of diversity has only recently become apparent with the emergence of data from whole genome sequencing projects and the coming years will reveal even more information on the diversity in microbial eukaryotes. This review seeks to describe the historical development of these studies and to highlight the importance of the genes and proteins. CYPs are deeply involved in the development of strategies for deterrence and attraction as well as detoxification. As such, there is intense interest in pathways of secondary metabolism that include CYPs in oxidative tailoring of antibiotics, sometimes influencing potency as bioactive compounds. Further to this is interest in CYPs in metabolism of xenobiotics for use as carbon sources for microbial growth and as biotransformation agents or in bioremediation. CYPs are also current and potential drug targets; compounds inhibiting CYP are antifungal and anti-protozoan agents, and potentially similar compounds may be useful against some bacterial diseases such as tuberculosis. Of note is the diversity of CYP requirements within an organism, ranging from Escherichia coli that has no CYPs as in many bacteria, to Mycobacterium smegmatis that has 40 representing 1% of coding genes. The basidiomycete fungus Phanerochaete chrysosporium surprised all when it was found to contain a hundred or more CYPs. The functional genomic investigation of these orphan CYPs is a major challenge for the future.

Microbial biotechnology addressing the plastic waste disaster.

Science.gov (United States)

Narancic, Tanja; O'Connor, Kevin E

2017-09-01

Oceans are a major source of biodiversity, they provide livelihood, and regulate the global ecosystem by absorbing heat and CO 2 . However, they are highly polluted with plastic waste. We are discussing here microbial biotechnology advances with the view to improve the start and the end of life of biodegradable polymers, which could contribute to the sustainable use of marine and coastal ecosystems (UN Sustainability development goal 14). © 2017 The Authors. Microbial Biotechnology published by John Wiley & Sons Ltd and Society for Applied Microbiology.

Counterintuitive proposals for trans-boundary ecological compensation under "No Net Loss" biodiversity policy

DEFF Research Database (Denmark)

Bull, Joseph William; Abatayo, Anna Lou; Strange, Niels

2017-01-01

‘No net loss’ (NNL) policies involve quantifying biodiversity impacts associated with economic development, and implementing commensurate conservation gains to balance losses. Local stakeholders are often affected by NNL biodiversity trades. But to what extent are NNL principles intuitive...... compensation should be: close to development impacts; greater than losses; smaller, given a background trend of biodiversity decline; and, smaller when gains have co-benefits for biodiversity. However, survey participant proposals violated all four principles. Participants proposed substantial forest...

A comparison of proxy performance in coral biodiversity monitoring

Science.gov (United States)

Richards, Zoe T.

2013-03-01

The productivity and health of coral reef habitat is diminishing worldwide; however, the effect that habitat declines have on coral reef biodiversity is not known. Logistical and financial constraints mean that surveys of hard coral communities rarely collect data at the species level; hence it is important to know if there are proxy metrics that can reliably predict biodiversity. Here, the performances of six proxy metrics are compared using regression analyses on survey data from a location in the northern Great Barrier Reef. Results suggest generic richness is a strong explanatory variable for spatial patterns in species richness (explaining 82 % of the variation when measured on a belt transect). The most commonly used metric of reef health, percentage live coral cover, is not positively or linearly related to hard coral species richness. This result raises doubt as to whether management actions based on such reefscape information will be effective for the conservation of coral biodiversity.

Using soil microbial inoculations to enhance substrate performance on extensive green roofs.

Science.gov (United States)

Molineux, Chloe J; Gange, Alan C; Newport, Darryl J

2017-02-15

Green roofs are increasing in popularity in the urban environment for their contribution to green infrastructure; but their role for biodiversity is not often a design priority. Maximising biodiversity will impact positively on ecosystem services and is therefore fundamental for achieving the greatest benefits from green roofs. Extensive green roofs are lightweight systems generally constructed with a specialised growing medium that tends to be biologically limited and as such can be a harsh habitat for plants to thrive in. Thus, this investigation aimed to enhance the soil functioning with inoculations of soil microbes to increase plant diversity, improve vegetation health/performance and maximise access to soil nutrients. Manipulations included the addition of mycorrhizal fungi and a microbial mixture ('compost tea') to green roof rootzones, composed mainly of crushed brick or crushed concrete. The study revealed that growing media type and depth play a vital role in the microbial ecology of green roofs, with complex relationships between depth and type of substrate and the type of microbial inoculant applied, with no clear pattern being observed. For bait plant measurements (heights, leaf numbers, root/shoot biomass, leaf nutrients), a compost tea may have positive effects on plant performance when grown in substrates of shallower depths (5.5cm), even one year after inoculums are applied. Results from the species richness surveys show that diversity was significantly increased with the application of an AM fungal treatment and that overall, results suggest that brick-based substrate blends are most effective for vegetation performance as are deeper depths (although this varied with time). Microbial inoculations of green roof habitats appeared to be sustainable; they need only be done once for benefits to still been seen in subsequent years where treatments are added independently (not in combination). They seem to be a novel and viable method of enhancing

Sustaining Rare Marine Microorganisms: Macroorganisms As Repositories and Dispersal Agents of Microbial Diversity.

Science.gov (United States)

Troussellier, Marc; Escalas, Arthur; Bouvier, Thierry; Mouillot, David

2017-01-01

Recent analyses revealed that most of the biodiversity observed in marine microbial communities is represented by organisms with low abundance but, nonetheless essential for ecosystem dynamics and processes across both temporal and spatial scales. Surprisingly, few studies have considered the effect of macroorganism-microbe interactions on the ecology and distribution dynamics of rare microbial taxa. In this review, we synthesize several lines of evidence that these relationships cannot be neglected any longer. First, we provide empirical support that the microbiota of macroorganisms represents a significant part of marine bacterial biodiversity and that host-microbe interactions benefit to certain microbial populations which are part of the rare biosphere (i.e., opportunistic copiotrophic organisms). Second, we reveal the major role that macroorganisms may have on the dispersal and the geographic distribution of microbes. Third, we introduce an innovative and integrated view of the interactions between microbes and macroorganisms, namely sustaining the rares , which suggests that macroorganisms favor the maintenance of marine microbial diversity and are involved in the regulation of its richness and dynamics. Finally, we show how this hypothesis complements existing theories in microbial ecology and offers new perspectives about the importance of macroorganisms for the microbial biosphere, particularly the rare members.

Species undersampling in tropical bat surveys: effects on emerging biodiversity patterns.

Science.gov (United States)

Meyer, Christoph F J; Aguiar, Ludmilla M S; Aguirre, Luis F; Baumgarten, Julio; Clarke, Frank M; Cosson, Jean-François; Estrada Villegas, Sergio; Fahr, Jakob; Faria, Deborah; Furey, Neil; Henry, Mickaël; Jenkins, Richard K B; Kunz, Thomas H; Cristina MacSwiney González, M; Moya, Isabel; Pons, Jean-Marc; Racey, Paul A; Rex, Katja; Sampaio, Erica M; Stoner, Kathryn E; Voigt, Christian C; von Staden, Dietrich; Weise, Christa D; Kalko, Elisabeth K V

2015-01-01

Undersampling is commonplace in biodiversity surveys of species-rich tropical assemblages in which rare taxa abound, with possible repercussions for our ability to implement surveys and monitoring programmes in a cost-effective way. We investigated the consequences of information loss due to species undersampling (missing subsets of species from the full species pool) in tropical bat surveys for the emerging patterns of species richness (SR) and compositional variation across sites. For 27 bat assemblage data sets from across the tropics, we used correlations between original data sets and subsets with different numbers of species deleted either at random, or according to their rarity in the assemblage, to assess to what extent patterns in SR and composition in data subsets are congruent with those in the initial data set. We then examined to what degree high sample representativeness (r ≥ 0·8) was influenced by biogeographic region, sampling method, sampling effort or structural assemblage characteristics. For SR, correlations between random subsets and original data sets were strong (r ≥ 0·8) with moderate (ca. 20%) species loss. Bias associated with information loss was greater for species composition; on average ca. 90% of species in random subsets had to be retained to adequately capture among-site variation. For nonrandom subsets, removing only the rarest species (on average c. 10% of the full data set) yielded strong correlations (r > 0·95) for both SR and composition. Eliminating greater proportions of rare species resulted in weaker correlations and large variation in the magnitude of observed correlations among data sets. Species subsets that comprised ca. 85% of the original set can be considered reliable surrogates, capable of adequately revealing patterns of SR and temporal or spatial turnover in many tropical bat assemblages. Our analyses thus demonstrate the potential as well as limitations for reducing survey effort and streamlining

Identification of flora and fauna biodiversity at Berau, East Kalimantan in NPP pre site survey

International Nuclear Information System (INIS)

June Mellawati; Fepriadi; Yarianto; Tajudin Laddade

2010-01-01

In pre survey activity of NPP site candidate, environmental aspect is a part of non safety aspect, but the existence as an important area is needed to consider. Pre survey activity of NPP site at Berau East Kalimantan is done for follow up result of agreement of Governor in Kalimantan. Purpose of study is to identify fauna and flora biodiversity in Berau Kalalimantn Timur to complete the data base of environmental aspect at survey activity of NPP site candidate The method used is to conduct an inventory and identification of flora-fauna through secondary data collection, making zoning area based on the type of endangered species, and analyze and evaluate the suitability. The survey location priority the coast area such as Sambaliung District, Derawan, Maratua, Tabalar, Biatan-Lempake, Talisayan, Batu Putih and Biduk-Biduk District, Berau Regency, East Kalimantan Province. Activity is done at June 2008 - June 2009. The results showed that there were various species of flora and fauna that are categorized protected under Law Decree no. 5 of 1990 in the study location. However, some areas such as Tanjung Pandan, Tanjung Bohe northern, southern of Tanjung Ulingan, District Derawan Island, and Batu Putih Talisayan District, and Teluk Sulaiman, Biduk-Biduk District need further study and consideration for zoning interest in nuclear power plants because they meet the existing criteria. (author)

Bioinformatic approaches reveal metagenomic characterization of soil microbial community.

Directory of Open Access Journals (Sweden)

Zhuofei Xu

Full Text Available As is well known, soil is a complex ecosystem harboring the most prokaryotic biodiversity on the Earth. In recent years, the advent of high-throughput sequencing techniques has greatly facilitated the progress of soil ecological studies. However, how to effectively understand the underlying biological features of large-scale sequencing data is a new challenge. In the present study, we used 33 publicly available metagenomes from diverse soil sites (i.e. grassland, forest soil, desert, Arctic soil, and mangrove sediment and integrated some state-of-the-art computational tools to explore the phylogenetic and functional characterizations of the microbial communities in soil. Microbial composition and metabolic potential in soils were comprehensively illustrated at the metagenomic level. A spectrum of metagenomic biomarkers containing 46 taxa and 33 metabolic modules were detected to be significantly differential that could be used as indicators to distinguish at least one of five soil communities. The co-occurrence associations between complex microbial compositions and functions were inferred by network-based approaches. Our results together with the established bioinformatic pipelines should provide a foundation for future research into the relation between soil biodiversity and ecosystem function.

Coastal biodiversity and ecosystem services flows at the landscape scale: The CBESS progamme.

Science.gov (United States)

Paterson, David; Bothwell, John; Bradbury, Richard; Burrows, Michael; Burton, Niall; Emmerson, Mark; Garbutt, Angus; Skov, Martin; Solan, Martin; Spencer, Tom; Underwood, Graham

2015-04-01

The health of the European coastline is inextricably linked to the economy and culture of coastal nations but they are sensitive to climate change. As global temperatures increase, sea levels will rise and the forces experienced where land meets sea will become more destructive. Salt marshes, mudflats, beaches will be affected. These landscapes support a wide range of economically valuable animal and plant species, but also act as sites of carbon storage, nutrient recycling, and pollutant capture and amelioration. Their preservation is of utmost importance. Our programme: "A hierarchical approach to the examination of the relationship between biodiversity and ecosystem service flows across coastal margins" (CBESS) is designed to understand the landscape-scale links between the functions that these systems provide (ecosystem service flows) and the organisms that provide these services (biodiversity stocks) and moves beyond most previous studies, conducted at smaller scales. Our consortium of experts ranges from microbial ecologists, through environmental economists, to mathematical modellers, and organisations (RSPB, BTO, CEFAS, EA) with vested interest in the sustainable use of coastal wetlands. CBESS spans the landscape scale, investigating how biodiversity stocks provide ecosystem services (cf. National Ecosystem Assessment: Supporting services; Provisioning services; Regulating services; and Cultural services). CBESS combined a detailed study of two regional landscapes with a broad-scale UK-wide study to allow both specific and general conclusions to be drawn. The regional study compares two areas of great UK national importance: Morecambe Bay on the west coast and the Essex coastline on the east. We carried out biological and physical surveys at more than 600 stations combined with in situ measures of ecosystem funtction to clarify how biodiversity can provide these important ecosystem functions across scales. This information will be shared with those

Interactive effects of climate change and biodiversity loss on ecosystem functioning.

Science.gov (United States)

Pires, Aliny P F; Srivastava, Diane S; Marino, Nicholas A C; MacDonald, A Andrew M; Figueiredo-Barros, Marcos Paulo; Farjalla, Vinicius F

2018-05-01

Climate change and biodiversity loss are expected to simultaneously affect ecosystems, however research on how each driver mediates the effect of the other has been limited in scope. The multiple stressor framework emphasizes non-additive effects, but biodiversity may also buffer the effects of climate change, and climate change may alter which mechanisms underlie biodiversity-function relationships. Here, we performed an experiment using tank bromeliad ecosystems to test the various ways that rainfall changes and litter diversity may jointly determine ecological processes. Litter diversity and rainfall changes interactively affected multiple functions, but how depends on the process measured. High litter diversity buffered the effects of altered rainfall on detritivore communities, evidence of insurance against impacts of climate change. Altered rainfall affected the mechanisms by which litter diversity influenced decomposition, reducing the importance of complementary attributes of species (complementarity effects), and resulting in an increasing dependence on the maintenance of specific species (dominance effects). Finally, altered rainfall conditions prevented litter diversity from fueling methanogenesis, because such changes in rainfall reduced microbial activity by 58%. Together, these results demonstrate that the effects of climate change and biodiversity loss on ecosystems cannot be understood in isolation and interactions between these stressors can be multifaceted. © 2018 by the Ecological Society of America.

CALICE: Calibrating Plant Biodiversity in Glacier Ice

Science.gov (United States)

Festi, Daniela; Cristofori, Antonella; Vernesi, Cristiano; Zerbe, Stefan; Wellstein, Camilla; Maggi, Valter; Oeggl, Klaus

2017-04-01

The objective of the project is to reconstruct plant biodiversity and its trend archived in Alpine glacier ice by pollen and eDNA (environmental DNA) during the last five decades by analyzing a 40 m ice core. For our study we chose the Adamello glacier (Trentino - Südtirol, Lombardia) because of i) the good preservation conditions for pollen and eDNA in ice, ii) the thickness of the ice cap (270m) and iii) the expected high time resolution. The biodiversity estimates gained by pollen analysis and eDNA will be validated by historical biodiversity assessments mainly based on vegetation maps, aerial photos and vegetation surveys in the catchment area of the Adamello glacier for the last five decades. This historical reconstruction of biodiversity trends will be performed on a micro-, meso- and macro-scale (5, 20-50 and 50-100 Km radius, respectively). The results will serve as a calibration data set on biodiversity for future studies, such as the second step of the coring by the POLLiCE research consortium (pollice.fmach.it). In fact, arrangements are currently been made to drill the complete ice cap and retrieve a 270 m thick core which has the potential to cover a time span of minimum 400 years up to several millennia. This second stage will extend the time scale and enable the evaluation of dissimilarity/similarity of modern biodiversity in relation to Late Holocene trends. Finally, we believe this case study has the potential to be applied in other glaciated areas to evaluate biodiversity for large regions (e.g. central Asian mountain ranges, Tibet and Tian Shan or the Andes).

Indigenous Angiosperm biodiversity of Olabisi Onabanjo University ...

African Journals Online (AJOL)

The conservation of the genetic variability of the indigenous angiosperm community is a sine qua non. A survey of indigenous angiosperm biodiversity of the Olabisi Onabanjo University permanent site was undertaken. Plants collected were dried, poisoned and mounted on herbarium sheets, proper identification and ...

Perchlorate reduction by hydrogen autotrophic bacteria and microbial community analysis using high-throughput sequencing.

Science.gov (United States)

Wan, Dongjin; Liu, Yongde; Niu, Zhenhua; Xiao, Shuhu; Li, Daorong

2016-02-01

Hydrogen autotrophic reduction of perchlorate have advantages of high removal efficiency and harmless to drinking water. But so far the reported information about the microbial community structure was comparatively limited, changes in the biodiversity and the dominant bacteria during acclimation process required detailed study. In this study, perchlorate-reducing hydrogen autotrophic bacteria were acclimated by hydrogen aeration from activated sludge. For the first time, high-throughput sequencing was applied to analyze changes in biodiversity and the dominant bacteria during acclimation process. The Michaelis-Menten model described the perchlorate reduction kinetics well. Model parameters q(max) and K(s) were 2.521-3.245 (mg ClO4(-)/gVSS h) and 5.44-8.23 (mg/l), respectively. Microbial perchlorate reduction occurred across at pH range 5.0-11.0; removal was highest at pH 9.0. The enriched mixed bacteria could use perchlorate, nitrate and sulfate as electron accepter, and the sequence of preference was: NO3(-) > ClO4(-) > SO4(2-). Compared to the feed culture, biodiversity decreased greatly during acclimation process, the microbial community structure gradually stabilized after 9 acclimation cycles. The Thauera genus related to Rhodocyclales was the dominated perchlorate reducing bacteria (PRB) in the mixed culture.

Public perceptions of risk to forest biodiversity.

Science.gov (United States)

McFarlane, Bonita L

2005-06-01

This study examines the perceived risks to forest biodiversity and perceived effectiveness of biodiversity conservation strategies among the general public. It tests the hypotheses that perceived risk to forest biodiversity is influenced by cognitive factors (value orientation and knowledge) and social-cultural factors (such as gender and environmental membership) and that risk perceptions influence other cognitive constructs such as support for natural resource policy and management. Data were collected from a sample of the general public (n= 596) in British Columbia, Canada by mail survey in 2001. Results show that insects and disease were perceived as the greatest risk. Educating the public and industry about biodiversity issues was perceived as a more effective conservation strategy than restricting human uses of the forest. Value orientation was a better predictor of perceptions of risk and perceived effectiveness of conservation strategies than knowledge indicators or social-cultural variables. Examining the indirect effects of social-cultural variables, however, revealed that value orientation may amplify the effect of these variables and suggests that alternative paths of influence should be included. Perceived risk showed an inconsistent association with perceived effectiveness of conservation strategies.

Key Biodiversity Areas identification in the Upper Guinea forest biodiversity hotspot

Directory of Open Access Journals (Sweden)

O.M.L. Kouame

2012-08-01

Full Text Available Priority-setting approaches and tools are commons ways to support the rapid extinction of species and their habitats and the effective allocation of resources for their conservation. The Key Biodiversity Area (KBA approach is a method for the identification of fine-scale priority areas for conservation. This process led bottom-up has been used in the Upper Guinea Forest Ecosystem of West Africa where human-induced changes have increased the extinction risk of several endemic and threatened species. The irreplaceability and vulnerability criteria commonly used in conservation planning have been used to identify key biodiversity areas in Ghana, Cote d’Ivoire, Liberia, Guinea and Sierra Leone. Point locality data were compiled from scientific reports, papers published in scientific journals and museum records. The delineation was conducted following a series of decision rules. In most cases existing IBA polygons and protected areas boundaries were used. For the new sites, temporary boundaries have been drawn and will be confirmed with land-use data. Preliminary KBA data were reviewed by specialists during formal workshops. One hundred and fifty four KBA have been identified in the five countries with 202 globally threatened species. Currently 63% of the KBA are protected. Two AZE sites still exist in the region. This assessment is a first step and is driven from the best available data at the time. There is a need to refine it with recent biodiversity surveys to assist decision-makers in achieving their conservation management goals.

Long-term oil contamination causes similar changes in microbial communities of two distinct soils.

Science.gov (United States)

Liao, Jingqiu; Wang, Jie; Jiang, Dalin; Wang, Michael Cai; Huang, Yi

2015-12-01

Since total petroleum hydrocarbons (TPH) are toxic and persistent in environments, studying the impact of oil contamination on microbial communities in different soils is vital to oil production engineering, effective soil management and pollution control. This study analyzed the impact of oil contamination on the structure, activity and function in carbon metabolism of microbial communities of Chernozem soil from Daqing oil field and Cinnamon soil from Huabei oil field through both culture-dependent techniques and a culture-independent technique-pyrosequencing. Results revealed that pristine microbial communities in these two soils presented disparate patterns, where Cinnamon soil showed higher abundance of alkane, (polycyclic aromatic hydrocarbons) PAHs and TPH degraders, number of cultivable microbes, bacterial richness, bacterial biodiversity, and stronger microbial activity and function in carbon metabolism than Chernozem soil. It suggested that complicated properties of microbes and soils resulted in the difference in soil microbial patterns. However, the changes of microbial communities caused by oil contamination were similar in respect of two dominant phenomena. Firstly, the microbial community structures were greatly changed, with higher abundance, higher bacterial biodiversity, occurrence of Candidate_division_BRC1 and TAO6, disappearance of BD1-5 and Candidate_division_OD1, dominance of Streptomyces, higher percentage of hydrocarbon-degrading groups, and lower percentage of nitrogen-transforming groups. Secondly, microbial activity and function in carbon metabolism were significantly enhanced. Based on the characteristics of microbial communities in the two soils, appropriate strategy for in situ bioremediation was provided for each oil field. This research underscored the usefulness of combination of culture-dependent techniques and next-generation sequencing techniques both to unravel the microbial patterns and understand the ecological impact of

Biodiversity of bacterial ecosystems in traditional Egyptian Domiati cheese.

Science.gov (United States)

El-Baradei, Gaber; Delacroix-Buchet, Agnès; Ogier, Jean-Claude

2007-02-01

Bacterial biodiversity occurring in traditional Egyptian soft Domiati cheese was studied by PCR-temporal temperature gel electrophoresis (TTGE) and PCR-denaturing gradient gel electrophoresis (DGGE). Bands were identified using a reference species database (J.-C. Ogier et al., Appl. Environ. Microbiol. 70:5628-5643, 2004); de novo bands having nonidentified migration patterns were identified by DNA sequencing. Results reveal a novel bacterial profile and extensive bacterial biodiversity in Domiati cheeses, as reflected by the numerous bands present in TTGE and DGGE patterns. The dominant lactic acid bacteria (LAB) identified were as follows: Leuconostoc mesenteroides, Lactococcus garvieae, Aerococcus viridans, Lactobacillus versmoldensis, Pediococcus inopinatus, and Lactococcus lactis. Frequent non-LAB species included numerous coagulase-negative staphylococci, Vibrio spp., Kocuria rhizophila, Kocuria kristinae, Kocuria halotolerans, Arthrobacter spp./Brachybacterium tyrofermentans. This is the first time that the majority of these species has been identified in Domiati cheese. Nearly all the dominant and frequent bacterial species are salt tolerant, and several correspond to known marine bacteria. As Domiati cheese contains 5.4 to 9.5% NaCl, we suggest that these bacteria are likely to have an important role in the ripening process. This first systematic study of the microbial composition of Domiati cheeses reveals great biodiversity and evokes a role for marine bacteria in determining cheese type.

Biodiversity of Bacterial Ecosystems in Traditional Egyptian Domiati Cheese▿

Science.gov (United States)

El-Baradei, Gaber; Delacroix-Buchet, Agnès; Ogier, Jean-Claude

2007-01-01

Bacterial biodiversity occurring in traditional Egyptian soft Domiati cheese was studied by PCR-temporal temperature gel electrophoresis (TTGE) and PCR-denaturing gradient gel electrophoresis (DGGE). Bands were identified using a reference species database (J.-C. Ogier et al., Appl. Environ. Microbiol. 70:5628-5643, 2004); de novo bands having nonidentified migration patterns were identified by DNA sequencing. Results reveal a novel bacterial profile and extensive bacterial biodiversity in Domiati cheeses, as reflected by the numerous bands present in TTGE and DGGE patterns. The dominant lactic acid bacteria (LAB) identified were as follows: Leuconostoc mesenteroides, Lactococcus garvieae, Aerococcus viridans, Lactobacillus versmoldensis, Pediococcus inopinatus, and Lactococcus lactis. Frequent non-LAB species included numerous coagulase-negative staphylococci, Vibrio spp., Kocuria rhizophila, Kocuria kristinae, Kocuria halotolerans, Arthrobacter spp./Brachybacterium tyrofermentans. This is the first time that the majority of these species has been identified in Domiati cheese. Nearly all the dominant and frequent bacterial species are salt tolerant, and several correspond to known marine bacteria. As Domiati cheese contains 5.4 to 9.5% NaCl, we suggest that these bacteria are likely to have an important role in the ripening process. This first systematic study of the microbial composition of Domiati cheeses reveals great biodiversity and evokes a role for marine bacteria in determining cheese type. PMID:17189434

The microbial diversity, distribution, and ecology of permafrost in China: a review.

Science.gov (United States)

Hu, Weigang; Zhang, Qi; Tian, Tian; Cheng, Guodong; An, Lizhe; Feng, Huyuan

2015-07-01

Permafrost in China mainly located in high-altitude areas. It represents a unique and suitable ecological niche that can be colonized by abundant microbes. Permafrost microbial community varies across geographically separated locations in China, and some lineages are novel and possible endemic. Besides, Chinese permafrost is a reservoir of functional microbial groups involved in key biogeochemical cycling processes. In future, more work is necessary to determine if these phylogenetic groups detected by DNA-based methods are part of the viable microbial community, and their functional roles and how they potentially respond to climate change. This review summaries recent studies describing microbial biodiversity found in permafrost and associated environments in China, and provides a framework for better understanding the microbial ecology of permafrost.

Optimal fire histories for biodiversity conservation.

Science.gov (United States)

Kelly, Luke T; Bennett, Andrew F; Clarke, Michael F; McCarthy, Michael A

2015-04-01

Fire is used as a management tool for biodiversity conservation worldwide. A common objective is to avoid population extinctions due to inappropriate fire regimes. However, in many ecosystems, it is unclear what mix of fire histories will achieve this goal. We determined the optimal fire history of a given area for biological conservation with a method that links tools from 3 fields of research: species distribution modeling, composite indices of biodiversity, and decision science. We based our case study on extensive field surveys of birds, reptiles, and mammals in fire-prone semi-arid Australia. First, we developed statistical models of species' responses to fire history. Second, we determined the optimal allocation of successional states in a given area, based on the geometric mean of species relative abundance. Finally, we showed how conservation targets based on this index can be incorporated into a decision-making framework for fire management. Pyrodiversity per se did not necessarily promote vertebrate biodiversity. Maximizing pyrodiversity by having an even allocation of successional states did not maximize the geometric mean abundance of bird species. Older vegetation was disproportionately important for the conservation of birds, reptiles, and small mammals. Because our method defines fire management objectives based on the habitat requirements of multiple species in the community, it could be used widely to maximize biodiversity in fire-prone ecosystems. © 2014 Society for Conservation Biology.

Networks of soil biota in a secondary succession gradient: Is it biodiversity or network structure that determines soil function?

Science.gov (United States)

Morriën, Elly; Hannula, Emilia; Snoek, Basten; Hol, Gera; van Veen, Hans; van der Putten, Wim

2017-04-01

Land abandonment is considered an effective tool for restoring biodiversity and ecosystem functions. However, thus far little attention is given to the role of soil biodiversity. Here, we present results of a soil biodiversity development and ecosystem functioning from a chonosequence of ex-arable fields in The Netherlands. These fields are typically managed by low-intensive grazing while undergoing a transition from an arable system into a species-rich grassland. We manipulated soil biodiversity to be able to couple biodiversity loss to loss of soil functions. We hypothesized that biodiversity loss would lead to less N uptake by plants and slower C transfer to microbes. A greenhouse mesocosm experiment was performed in which sterilized soils from the chronosequence were re-inoculated with a dilution series of soil suspensions (filtered to include only bacteria, fungi and protozoa) to manipulate soil diversity. These mesocosms were planted with a community of plants that naturally occur in all of the grasslands along the chronosequence. We measured microbial community development with TRFLP and sequencing, plant C, N and biomass and using dual labelled 15N ammonium nitrate (15NH415NO3) and 13C in the form of 13CO2 fed to the plants to assess the short term fate, turnover and retention of recent plant assimilated carbon and nitrogen in soil. The faith of the C and N were followed by sequential sampling of aboveground and belowground plant tissues and soil bacterial and fungal PLFA and NLFA biomarkers. With the first method the role of microbial diversity and soil on plant carbon assimilation and nitrogen uptake was evaluated. This was further related to the amount of recently photosynthesized carbon plants allocated to different microbial groups in soils. Microbial end-communities were pyrosequenced to evaluate the end diversity. In this study we showed the effects of the loss of soil biodiversity to C and N cycling in plants and microbes. Next to this manipulative

Introducing SONS, a tool for operational taxonomic unit-based comparisons of microbial community memberships and structures.

Science.gov (United States)

Schloss, Patrick D; Handelsman, Jo

2006-10-01

The recent advent of tools enabling statistical inferences to be drawn from comparisons of microbial communities has enabled the focus of microbial ecology to move from characterizing biodiversity to describing the distribution of that biodiversity. Although statistical tools have been developed to compare community structures across a phylogenetic tree, we lack tools to compare the memberships and structures of two communities at a particular operational taxonomic unit (OTU) definition. Furthermore, current tests of community structure do not indicate the similarity of the communities but only report the probability of a statistical hypothesis. Here we present a computer program, SONS, which implements nonparametric estimators for the fraction and richness of OTUs shared between two communities.

Deep Water Survey Data

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The deep water biodiversity surveys explore and describe the biodiversity of the bathy- and bentho-pelagic nekton using Midwater and bottom trawls centered in the...

Both Direct and Vicarious Experiences of Nature Affect Children's Willingness to Conserve Biodiversity.

Science.gov (United States)

Soga, Masashi; Gaston, Kevin J; Yamaura, Yuichi; Kurisu, Kiyo; Hanaki, Keisuke

2016-05-25

Children are becoming less likely to have direct contact with nature. This ongoing loss of human interactions with nature, the extinction of experience, is viewed as one of the most fundamental obstacles to addressing global environmental challenges. However, the consequences for biodiversity conservation have been examined very little. Here, we conducted a questionnaire survey of elementary schoolchildren and investigated effects of the frequency of direct (participating in nature-based activities) and vicarious experiences of nature (reading books or watching TV programs about nature and talking about nature with parents or friends) on their affective attitudes (individuals' emotional feelings) toward and willingness to conserve biodiversity. A total of 397 children participated in the surveys in Tokyo. Children's affective attitudes and willingness to conserve biodiversity were positively associated with the frequency of both direct and vicarious experiences of nature. Path analysis showed that effects of direct and vicarious experiences on children's willingness to conserve biodiversity were mediated by their affective attitudes. This study demonstrates that children who frequently experience nature are likely to develop greater emotional affinity to and support for protecting biodiversity. We suggest that children should be encouraged to experience nature and be provided with various types of these experiences.

Circular linkages between soil biodiversity, fertility and plant productivity are limited to topsoil at the continental scale.

Science.gov (United States)

Delgado-Baquerizo, Manuel; Powell, Jeff R; Hamonts, Kelly; Reith, Frank; Mele, Pauline; Brown, Mark V; Dennis, Paul G; Ferrari, Belinda C; Fitzgerald, Anna; Young, Andrew; Singh, Brajesh K; Bissett, Andrew

2017-08-01

The current theoretical framework suggests that tripartite positive feedback relationships between soil biodiversity, fertility and plant productivity are universal. However, empirical evidence for these relationships at the continental scale and across different soil depths is lacking. We investigate the continental-scale relationships between the diversity of microbial and invertebrate-based soil food webs, fertility and above-ground plant productivity at 289 sites and two soil depths, that is 0-10 and 20-30 cm, across Australia. Soil biodiversity, fertility and plant productivity are strongly positively related in surface soils. Conversely, in the deeper soil layer, the relationships between soil biodiversity, fertility and plant productivity weaken considerably, probably as a result of a reduction in biodiversity and fertility with depth. Further modeling suggested that strong positive associations among soil biodiversity-fertility and fertility-plant productivity are limited to the upper soil layer (0-10 cm), after accounting for key factors, such as distance from the equator, altitude, climate and physicochemical soil properties. These findings highlight the importance of surface soil biodiversity for soil fertility, and suggest that any loss of surface soil could potentially break the links between soil biodiversity-fertility and/or fertility-plant productivity, which can negatively impact nutrient cycling and food production, upon which future generations depend. © 2017 The Authors. New Phytologist © 2017 New Phytologist Trust.

Business and biodiversity

DEFF Research Database (Denmark)

Andersen, Rasmus Meyer; Lehmann, Martin; Christensen, Per

Despite the overall importance of biodiversity, the quality measures of biodiversity show worrying figures. Numerous human impacts on nature impose serious hazard to its inherent diversity. This expansion of human activities leaves the battle against loss of biodiversity to be a great challenge......, but the effort has until now considered biodiversity actions relatively little, compared to other areas such as e.g. climate related actions. Nevertheless, the opportunity for businesses to meet their responsibilities and lift a share of the challenge is far from being just a romantic thought. Nor...... is the challenge of engaging businesses in responsible actions. The core challenge is to create awareness of the environmental phenomenon biodiversity, inform about the significance of business involvement, and encourage the business world to participate in this process of protecting biodiversity as the valuable...

Mid-Atlantic Ridge Deepwater Biodiversity Exploration (HB0902, EK60)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Objectives: With the overall goal of surveying and describing the biodiversity of the bathypelagic fauna near the Mid-Atlantic Ridge, a team of biological...

[From biodiversity to biodiversification: a new economy of nature?].

Science.gov (United States)

Höhler, Sabine

2014-03-01

This paper explores the relations between economy and ecology in the last quarter of the 20th century with the example of biodiversity. From its definition in the 1980s, the concept of biodiversity responded not only to conservational concerns but also to hopes and demands of economic profitability. The paper argues that archival systems of inventorying and surveying nature, the biodiversity database and the biodiversity portfolio, changed the view on nature from a resource to an investment. The paper studies the alliances of ecologists and environmental economists in managing nature according to economic principles of successful asset management, "diversification", with the aim to distribute risk, minimize ecological loss and maximize overall ecosystem performance. Finally, the paper discusses the assumptions and the consequences of transferring principles from financial risk management to landscape management. How has the substitution of the existential values of nature by shareholder value affected the relations between ecology, environment, and ecosystem conservation? Who gains and who looses in exchanging natural capital and financial capital, yields, and profits?

Biodiversity of soil bacteria exposed to sub-lethal concentrations of phosphonium-based ionic liquids: Effects of toxicity and biodegradation

DEFF Research Database (Denmark)

Sydow, Mateusz; Owsianiak, Mikołaj; Framski, Grzegorz

2018-01-01

on the structure of microbial community present in an urban park soil in 100-day microcosm experiments. The biodiversity decreased in all samples (Shannon's index decreased from 1.75 down to 0.74 and OTU's number decreased from 1399 down to 965) with the largest decrease observed in the microcosms spiked with ILs...... ILs or their metabolites. Thus, the introduction of phosphonium-based ILs into soils at sub-lethal concentrations may result not only in a decrease in biodiversity due to toxic effects, but also in enrichment with ILs-degrading bacteria....

Effects of Plant Functional Group Loss on Soil Microbial Community and Litter Decomposition in a Steppe Vegetation.

Science.gov (United States)

Xiao, Chunwang; Zhou, Yong; Su, Jiaqi; Yang, Fan

2017-01-01

Globally, many terrestrial ecosystems are experiencing a rapid loss of biodiversity. Continued improvements in our understanding of interrelationships between plant diversity and soil microbes are critical to address the concern over the consequences of the decline in biodiversity on ecosystem functioning and services. By removing forbs, or grasses, or, to an extreme scenario, both forbs and grasses in a steppe vegetation in Inner Mongolia, we studied how plant functional group (PFG) loss affects soil microbial community composition using phospholipid fatty acid analysis (PLFA) and litter decomposition using a litter-bag method. PFG loss significantly decreased above- and below-ground plant biomass, soil microbial biomass carbon (SMBC) and nitrogen (SMBN), but had no effect on the ratio of SMBC to SMBN. Although the ratio of fungal to bacterial PLFAs remained unaffected, PFG loss significantly reduced the amount of bacterial, fungal, and total PLFAs. PFG loss decreased litter monthly mass loss and decay constant, and such decrease was significant when both forbs and grasses were removed. Our results provide robust evidence that PFG loss in grassland ecosystem can lead to a rapid response of soil microbial activity which may affect litter decomposition and soil nutrient cycling, suggesting that the assessment of plant-microbe interactions in soils is an integral component of ecosystem response to biodiversity loss.

Cooperation in carbon source degradation shapes spatial self-organization of microbial consortia on hydrated surfaces

OpenAIRE

Tecon, Robin; Or, Dani

2017-01-01

Mounting evidence suggests that natural microbial communities exhibit a high level of spatial organization at the micrometric scale that facilitate ecological interactions and support biogeochemical cycles. Microbial patterns are difficult to study definitively in natural environments due to complex biodiversity, observability and variable physicochemical factors. Here, we examine how trophic dependencies give rise to self-organized spatial patterns of a well-defined bacterial consortium grow...

Both Direct and Vicarious Experiences of Nature Affect Children’s Willingness to Conserve Biodiversity

Directory of Open Access Journals (Sweden)

Masashi Soga

2016-05-01

Full Text Available Children are becoming less likely to have direct contact with nature. This ongoing loss of human interactions with nature, the extinction of experience, is viewed as one of the most fundamental obstacles to addressing global environmental challenges. However, the consequences for biodiversity conservation have been examined very little. Here, we conducted a questionnaire survey of elementary schoolchildren and investigated effects of the frequency of direct (participating in nature-based activities and vicarious experiences of nature (reading books or watching TV programs about nature and talking about nature with parents or friends on their affective attitudes (individuals’ emotional feelings toward and willingness to conserve biodiversity. A total of 397 children participated in the surveys in Tokyo. Children’s affective attitudes and willingness to conserve biodiversity were positively associated with the frequency of both direct and vicarious experiences of nature. Path analysis showed that effects of direct and vicarious experiences on children’s willingness to conserve biodiversity were mediated by their affective attitudes. This study demonstrates that children who frequently experience nature are likely to develop greater emotional affinity to and support for protecting biodiversity. We suggest that children should be encouraged to experience nature and be provided with various types of these experiences.

Microbial biotechnology addressing the plastic waste disaster

OpenAIRE

Narancic, Tanja; O'Connor, Kevin E.

2017-01-01

Oceans are a major source of biodiversity, they provide livelihood, and regulate the global ecosystem by absorbing heat and CO 2. However, they are highly polluted with plastic waste. We are discussing here microbial biotechnology advances with the view to improve the start and the end of life of biodegradable polymers, which could contribute to the sustainable use of marine and coastal ecosystems (UN Sustainability development goal 14).

How Essential Biodiversity Variables and remote sensing can help national biodiversity monitoring

Directory of Open Access Journals (Sweden)

Petteri Vihervaara

2017-04-01

Full Text Available Essential Biodiversity Variables (EBVs have been suggested to harmonize biodiversity monitoring worldwide. Their aim is to provide a small but comprehensive set of monitoring variables that would give a balanced picture of the development of biodiversity and the reaching of international and national biodiversity targets. Globally, GEO BON (Group on Earth Observations Biodiversity Observation Network has suggested 22 candidate EBVs to be monitored. In this article we regard EBVs as a conceptual tool that may help in making national scale biodiversity monitoring more robust by pointing out where to focus further development resources. We look at one country –Finland –with a relatively advanced biodiversity monitoring scheme and study how well Finland’s current biodiversity state indicators correspond with EBVs. In particular, we look at how national biodiversity monitoring could be improved by using available remote sensing (RS applications. Rapidly emerging new technologies from drones to airborne laser scanning and new satellite sensors providing imagery with very high resolution (VHR open a whole new world of opportunities for monitoring the state of biodiversity and ecosystems at low cost. In Finland, several RS applications already exist that could be expanded into national indicators. These include the monitoring of shore habitats and water quality parameters, among others. We hope that our analysis and examples help other countries with similar challenges. Along with RS opportunities, our analysis revealed also some needs to develop the EBV framework itself.

Detectability counts when assessing populations for biodiversity targets.

Directory of Open Access Journals (Sweden)

Silviu O Petrovan

Full Text Available Efficient, practical and accurate estimates of population parameters are a necessary basis for effective conservation action to meet biodiversity targets. The brown hare is representative of many European farmland species: historically widespread and abundant but having undergone rapid declines as a result of agricultural intensification. As a priority species in the UK Biodiversity Action Plan, it has national targets for population increase that are part of wider national environmental indicators. Previous research has indicated that brown hare declines have been greatest in pastural landscapes and that gains might be made by focussing conservation effort there. We therefore used hares in pastural landscapes to examine how basic changes in survey methodology can affect the precision of population density estimates and related these to national targets for biodiversity conservation in the UK. Line transects for hares carried out at night resulted in higher numbers of detections, had better-fitting detection functions and provided more robust density estimates with lower effort than those during the day, due primarily to the increased probability of detection of hares at night and the nature of hare responses to the observer. Hare spring densities varied widely within a single region, with a pooled mean of 20.6 hares km(-2, significantly higher than the reported national average of hares in pastures of 3.3 hares km(-2. The high number of encounters allowed us to resolve hare densities at site, season and year scales. We demonstrate how survey conduct can impact on data quantity and quality with implications for setting and monitoring biodiversity targets. Our case study of the brown hare provides evidence that for wildlife species with low detectability, large scale volunteer-based monitoring programmes, either species specific or generalist, might be more successfully and efficiently carried out by a small number of trained personnel able to

A survey of Opportunities for Microbial Conversion of Biomass to Hydrocarbon Compatible Fuels

Energy Technology Data Exchange (ETDEWEB)

Jovanovic, Iva; Jones, Susanne B.; Santosa, Daniel M.; Dai, Ziyu; Ramasamy, Karthikeyan K.; Zhu, Yunhua

2010-09-01

Biomass is uniquely able to supply renewable and sustainable liquid transportation fuels. In the near term, the Biomass program has a 2012 goal of cost competitive cellulosic ethanol. However, beyond 2012, there will be an increasing need to provide liquid transportation fuels that are more compatible with the existing infrastructure and can supply fuel into all transportation sectors, including aviation and heavy road transport. Microbial organisms are capable of producing a wide variety of fuel and fuel precursors such as higher alcohols, ethers, esters, fatty acids, alkenes and alkanes. This report surveys liquid fuels and fuel precurors that can be produced from microbial processes, but are not yet ready for commercialization using cellulosic feedstocks. Organisms, current research and commercial activities, and economics are addressed. Significant improvements to yields and process intensification are needed to make these routes economic. Specifically, high productivity, titer and efficient conversion are the key factors for success.

BIOMETORE Project - Studying the Biodiversity in the Northeastern Atlantic Seamounts

Science.gov (United States)

Dos Santos, A.; Biscoito, M.; Campos, A.; Tuaty Guerra, M.; Meneses, G.; Santos, A. M. P. A.

2016-02-01

Understanding the deep-sea ecosystem functioning is a key issue in the study of ocean sciences. Bringing together researchers from several scientific domains, the BIOMETORE project aims to the increase knowledge on deep-sea ecosystems and biodiversity at the Atlantic seamounts of the Madeira-Tore and Great Meteor geological complexes. The project outputs will provide important information for the understanding and sustainable management of the target seamount ecosystems, thus contributing to fulfill knowledge gaps on their biodiversity, from bacteria to mammals, and food webs, as well as to promote future sustainable fisheries and sea-floor integrity. The plan includes the realization of eight multidisciplinary surveys, four done during the summer of 2015 and another four planned for the same season of 2016, in target seamounts: the Gorringe bank, the Josephine, and others in the Madeira-Tore, and selected ones in the Greta Meteor (northeastern Atlantic Ocean). The surveys cover a number of scientific areas in the domains of oceanography, ecology, integrative taxonomy, geology, fisheries and spatial mapping. We present and discuss BIOMETORE developments, the preliminary results from the four 2015 summer surveys, and the planning of the next four surveys.

Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database.

Science.gov (United States)

Bissett, Andrew; Fitzgerald, Anna; Meintjes, Thys; Mele, Pauline M; Reith, Frank; Dennis, Paul G; Breed, Martin F; Brown, Belinda; Brown, Mark V; Brugger, Joel; Byrne, Margaret; Caddy-Retalic, Stefan; Carmody, Bernie; Coates, David J; Correa, Carolina; Ferrari, Belinda C; Gupta, Vadakattu V S R; Hamonts, Kelly; Haslem, Asha; Hugenholtz, Philip; Karan, Mirko; Koval, Jason; Lowe, Andrew J; Macdonald, Stuart; McGrath, Leanne; Martin, David; Morgan, Matt; North, Kristin I; Paungfoo-Lonhienne, Chanyarat; Pendall, Elise; Phillips, Lori; Pirzl, Rebecca; Powell, Jeff R; Ragan, Mark A; Schmidt, Susanne; Seymour, Nicole; Snape, Ian; Stephen, John R; Stevens, Matthew; Tinning, Matt; Williams, Kristen; Yeoh, Yun Kit; Zammit, Carla M; Young, Andrew

2016-01-01

Microbial inhabitants of soils are important to ecosystem and planetary functions, yet there are large gaps in our knowledge of their diversity and ecology. The 'Biomes of Australian Soil Environments' (BASE) project has generated a database of microbial diversity with associated metadata across extensive environmental gradients at continental scale. As the characterisation of microbes rapidly expands, the BASE database provides an evolving platform for interrogating and integrating microbial diversity and function. BASE currently provides amplicon sequences and associated contextual data for over 900 sites encompassing all Australian states and territories, a wide variety of bioregions, vegetation and land-use types. Amplicons target bacteria, archaea and general and fungal-specific eukaryotes. The growing database will soon include metagenomics data. Data are provided in both raw sequence (FASTQ) and analysed OTU table formats and are accessed via the project's data portal, which provides a user-friendly search tool to quickly identify samples of interest. Processed data can be visually interrogated and intersected with other Australian diversity and environmental data using tools developed by the 'Atlas of Living Australia'. Developed within an open data framework, the BASE project is the first Australian soil microbial diversity database. The database will grow and link to other global efforts to explore microbial, plant, animal, and marine biodiversity. Its design and open access nature ensures that BASE will evolve as a valuable tool for documenting an often overlooked component of biodiversity and the many microbe-driven processes that are essential to sustain soil function and ecosystem services.

Effect of ecosystems substitutions and CO2 increase of the atmosphere on the microbial ecosystems of forests

International Nuclear Information System (INIS)

Martin, F.

2007-01-01

Biological diversity is often exclusively considered at the level of plants and animals, whereas the bulk of global biodiversity is in fact at the microbial level. Although it is clear that the ecology of our planet is driven by microbial ecosystems, we are severely hampered by our limited understanding of the diversity and function of such microbial ecosystems. In the present project, teams in the disciplines of geochemistry, soil microbiology, genomics and ecosystem processes are assembled to study the relationship between environmental change, land use changes, biodiversity, and functioning of forest ecosystems. The network has a strong focus on developing and applying biochemical and genotyping methodologies to address key scientific issues in soil microbial ecology. These include assessing the impact of environmental- and land use changes on microbial diversity and function and exploring the evolutionary and mechanistic links between biological diversity and ecosystem function. In the present study, we have shown that: (1) The native mixed forest showed the highest microbial diversity (2) The mono specific plantations of tree species (e.g., oak, beech, pine, spruce) strikingly alter genetic and functional diversities of soil bacterial and fungal species. (3) Bacterial denitrification rates were dramatically modified by the planted species. Only by taking into account the impact of forest management on below-ground microbial diversity can one hope to get a full ecosystem-based understanding, and this must be addressed via modelling in order to provide relevant and useful information for conservation and policy making. (author)

Biodiversity, the Human Microbiome and Mental Health: Moving toward a New Clinical Ecology for the 21st Century?

Directory of Open Access Journals (Sweden)

Susan L. Prescott

2016-01-01

Full Text Available Advances in research concerning the brain-related influences of the microbiome have been paradigm shifting, although at an early stage, clinical research involving beneficial microbes lends credence to the notion that the microbiome may be an important target in supporting mental health (defined here along the continuum between quality of life and the criteria for specific disorders. Through metagenomics, proteomics, metabolomics, and systems biology, a new emphasis to personalized medicine is on the horizon. Humans can now be viewed as multispecies organisms operating within an ecological theatre; it is important that clinicians increasingly see their patients in this context. Historically marginalized ecological aspects of health are destined to become an important consideration in the new frontiers of practicing medicine with the microbiome in mind. Emerging evidence indicates that macrobiodiversity in the external environment can influence mental well-being. Local biodiversity may also drive differences in human-associated microbiota; microbial diversity as a product of external biodiversity may have far-reaching effects on immune function and mood. With a focus on the microbiome as it pertains to mental health, we define environmental “grey space” and emphasize a new frontier involving bio-eco-psychological medicine. Within this concept the ecological terrain can link dysbiotic lifestyles and biodiversity on the grand scale to the local human-associated microbial ecosystems that might otherwise seem far removed from one another.

Protecting the Endangered Biodiversity in The Gilgel-Gibe Rivers ...

African Journals Online (AJOL)

The major objectives of the survey were: To ascertain the degree of endangering the biodiversity in the basins; to inform the professionals and farmers how their activities contribute to environmental degradation; to encourage the communities to initiate mitigating measures to arrest environmental degradation; to influence ...

Genomic Approaches in Marine Biodiversity and Aquaculture

Directory of Open Access Journals (Sweden)

Jorge A Huete-Pérez

2013-01-01

Full Text Available Recent advances in genomic and post-genomic technologies have now established the new standard in medical and biotechnological research. The introduction of next-generation sequencing, NGS,has resulted in the generation of thousands of genomes from all domains of life, including the genomes of complex uncultured microbial communities revealed through metagenomics. Although the application of genomics to marine biodiversity remains poorly developed overall, some noteworthy progress has been made in recent years. The genomes of various model marine organisms have been published and a few more are underway. In addition, the recent large-scale analysis of marine microbes, along with transcriptomic and proteomic approaches to the study of teleost fishes, mollusks and crustaceans, to mention a few, has provided a better understanding of phenotypic variability and functional genomics. The past few years have also seen advances in applications relevant to marine aquaculture and fisheries. In this review we introduce several examples of recent discoveries and progress made towards engendering genomic resources aimed at enhancing our understanding of marine biodiversity and promoting the development of aquaculture. Finally, we discuss the need for auspicious science policies to address challenges confronting smaller nations in the appropriate oversight of this growing domain as they strive to guarantee food security and conservation of their natural resources.

Net present biodiversity value and the design of biodiversity offsets.

Science.gov (United States)

Overton, Jacob McC; Stephens, R T Theo; Ferrier, Simon

2013-02-01

There is an urgent need to develop sound theory and practice for biodiversity offsets to provide a better basis for offset multipliers, to improve accounting for time delays in offset repayments, and to develop a common framework for evaluating in-kind and out-of-kind offsets. Here, we apply concepts and measures from systematic conservation planning and financial accounting to provide a basis for determining equity across type (of biodiversity), space, and time. We introduce net present biodiversity value (NPBV) as a theoretical and practical measure for defining the offset required to achieve no-net-loss. For evaluating equity in type and space we use measures of biodiversity value from systematic conservation planning. Time discount rates are used to address risk of non-repayment, and loss of utility. We illustrate these concepts and measures with two examples of biodiversity impact-offset transactions. Considerable further work is required to understand the characteristics of these approaches.

Can wide consultation help with setting priorities for large-scale biodiversity monitoring programs?

Directory of Open Access Journals (Sweden)

Frédéric Boivin

Full Text Available Climate and other global change phenomena affecting biodiversity require monitoring to track ecosystem changes and guide policy and management actions. Designing a biodiversity monitoring program is a difficult task that requires making decisions that often lack consensus due to budgetary constrains. As monitoring programs require long-term investment, they also require strong and continuing support from all interested parties. As such, stakeholder consultation is key to identify priorities and make sound design decisions that have as much support as possible. Here, we present the results of a consultation conducted to serve as an aid for designing a large-scale biodiversity monitoring program for the province of Québec (Canada. The consultation took the form of a survey with 13 discrete choices involving tradeoffs in respect to design priorities and 10 demographic questions (e.g., age, profession. The survey was sent to thousands of individuals having expected interests and knowledge about biodiversity and was completed by 621 participants. Overall, consensuses were few and it appeared difficult to create a design fulfilling the priorities of the majority. Most participants wanted 1 a monitoring design covering the entire territory and focusing on natural habitats; 2 a focus on species related to ecosystem services, on threatened and on invasive species. The only demographic characteristic that was related to the type of prioritization was the declared level of knowledge in biodiversity (null to high, but even then the influence was quite small.

Can wide consultation help with setting priorities for large-scale biodiversity monitoring programs?

Science.gov (United States)

Boivin, Frédéric; Simard, Anouk; Peres-Neto, Pedro

2014-01-01

Climate and other global change phenomena affecting biodiversity require monitoring to track ecosystem changes and guide policy and management actions. Designing a biodiversity monitoring program is a difficult task that requires making decisions that often lack consensus due to budgetary constrains. As monitoring programs require long-term investment, they also require strong and continuing support from all interested parties. As such, stakeholder consultation is key to identify priorities and make sound design decisions that have as much support as possible. Here, we present the results of a consultation conducted to serve as an aid for designing a large-scale biodiversity monitoring program for the province of Québec (Canada). The consultation took the form of a survey with 13 discrete choices involving tradeoffs in respect to design priorities and 10 demographic questions (e.g., age, profession). The survey was sent to thousands of individuals having expected interests and knowledge about biodiversity and was completed by 621 participants. Overall, consensuses were few and it appeared difficult to create a design fulfilling the priorities of the majority. Most participants wanted 1) a monitoring design covering the entire territory and focusing on natural habitats; 2) a focus on species related to ecosystem services, on threatened and on invasive species. The only demographic characteristic that was related to the type of prioritization was the declared level of knowledge in biodiversity (null to high), but even then the influence was quite small.

Engaging the public in biodiversity issues

OpenAIRE

Novacek, Michael J.

2008-01-01

To engage people in biodiversity and other environmental issues, one must provide the opportunity for enhanced understanding that empowers individuals to make choices and take action based on sound science and reliable recommendations. To this end, we must acknowledge some real challenges. Recent surveys show that, despite growing public concern, environmental issues still rank below many other problems, such as terrorism, health care, the economy, and (in the U.S.) family values. Moreover, m...

Towards global interoperability for supporting biodiversity research on Essential Biodiversity Variables (EBVs)

NARCIS (Netherlands)

Kissling, W.D.; Hardisty, A.; García, E.A.; Santamaria, M.; De Leo, F.; Pesole, G.; Freyhof, J.; Manset, D.; Wissel, S.; Konijn, J.; Los, W.

2015-01-01

Essential biodiversity variables (EBVs) have been proposed by the Group on Earth Observations Biodiversity Observation Network (GEO BON) to identify a minimum set of essential measurements that are required for studying, monitoring and reporting biodiversity and ecosystem change. Despite the initial

Laser engineering of microbial systems

Science.gov (United States)

Yusupov, V. I.; Gorlenko, M. V.; Cheptsov, V. S.; Minaev, N. V.; Churbanova, E. S.; Zhigarkov, V. S.; Chutko, E. A.; Evlashin, S. A.; Chichkov, B. N.; Bagratashvili, V. N.

2018-06-01

A technology of laser engineering of microbial systems (LEMS) based on the method of laser-induced transfer of heterogeneous mixtures containing microorganisms (laser bioprinting) is described. This technology involves laser printing of soil microparticles by focusing near-infrared laser pulses on a specially prepared gel/soil mixture spread onto a gold-coated glass plate. The optimal range of laser energies from the point of view of the formation of stable jets and droplets with minimal negative impact on living systems of giant accelerations, laser pulse irradiation, and Au nanoparticles was found. Microsamples of soil were printed on glucose-peptone-yeast agar plates to estimate the LEMS process influence on structural and morphological microbial diversity. The obtained results were compared with traditionally treated soil samples. It was shown that LEMS technology allows significantly increasing the biodiversity of printed organisms and is effective for isolating rare or unculturable microorganisms.

Floristic Characteristics and Biodiversity Patterns in the Baishuijiang River Basin, China

Science.gov (United States)

Liu, Bing; Zhao, Wenzhi; Wen, Zijuan; Teng, Jirong; Li, Xiaohong

2009-07-01

A case study was conducted on the forest ecosystem in the Baishuijiang River basin of China to reveal the influences of environmental factors and human disturbance on the floristic characteristics and biodiversity patterns. Field surveys of the floristic composition, environmental factors, and disturbance factors were conducted along an elevation gradient, and the relationships between biodiversity pattern and environmental factors were analyzed using CCA (canonical correspondence analysis). The results showed that the floristic composition of higher plants consisted of 197 families, 796 genera, 2165 species, 19 subspecies, 239 varietas, and 12 forma, and it was characterized by the multi-geographic composition and by the transition from tropical to temperate zones. Along an elevation gradient, the variations in α and β diversity were best described by a bimodal curve, and the peak values occurred at middle elevations. The CCA indicated that the elevation had the greatest influence on the biodiversity pattern, followed by the topographic index, slope direction, slope, slope position, slope shape, and vegetation coverage. In addition, human disturbance has greatly impacted the floristic composition and biodiversity patterns, and the biodiversity indices were higher with intermediate disturbance at middle elevations compared to higher and lower disturbances at low and high elevations, respectively. This reflected a disturbance-diversity pattern and thus revealed the obvious importance to maintain the intermediate disturbance for biodiversity conservation.

Status of Biodiversity and Its Conservation in the Kobadak River Basin of Maheshpur Upazila, Jhenaidah, Bangladesh

Science.gov (United States)

Uddin, Jashim Md.

2015-01-01

This research project represents the Status of Biodiversity and Its Conservation of Kobadak River basin of Maheshpur Upazila. The study was designed to develop a set of information about the present condition of biodiversity of the study area. Both primary and secondary data have been used to fulfill the survey successfully. Primary data have been…

Toward a microbial Neolithic revolution in buildings.

Science.gov (United States)

Thaler, David S

2016-03-29

The Neolithic revolution--the transition of our species from hunter and gatherer to cultivator--began approximately 14,000 years ago and is essentially complete for macroscopic food. Humans remain largely pre-Neolithic in our relationship with microbes but starting with the gut we continue our hundred-year project of approaching the ability to assess and cultivate benign microbiomes in our bodies. Buildings are analogous to the body and it is time to ask what it means to cultivate benign microbiomes in our built environment. A critical distinction is that we have not found, or invented, niches in buildings where healthful microbial metabolism occurs and/or could be cultivated. Key events affecting the health and healthfulness of buildings such as a hurricane leading to a flood or a burst pipe occur only rarely and unpredictably. The cause may be transient but the effects can be long lasting and, e.g., for moisture damage, cumulative. Non-invasive "building tomography" could find moisture and "sentinel microbes" could record the integral of transient growth. "Seed" microbes are metabolically inert cells able to grow when conditions allow. All microbes and their residue present actinic molecules including immunological epitopes (molecular shapes). The fascinating hygiene and microbial biodiversity hypotheses propose that a healthy immune system requires exposure to a set of microbial epitopes that is rich in diversity. A particular conjecture is that measures of the richness of diversity derived from microbiome next-generation sequencing (NGS) can be mechanistically coupled to--rather than merely correlated with some measures of--human health. These hypotheses and conjectures inspire workers and funders but an alternative is also consequent to the first Neolithic revolution: That the genetic uniformity of contemporary foods may also decrease human exposure to molecular biodiversity in a heath-relevant manner. Understanding the consequences--including the unintended

Biodiversity impact assessment (BIA+) - methodological framework for screening biodiversity.

Science.gov (United States)

Winter, Lisa; Pflugmacher, Stephan; Berger, Markus; Finkbeiner, Matthias

2018-03-01

For the past 20 years, the life cycle assessment (LCA) community has sought to integrate impacts on biodiversity into the LCA framework. However, existing impact assessment methods still fail to do so comprehensively because they quantify only a few impacts related to specific species and regions. This paper proposes a methodological framework that will allow LCA practitioners to assess currently missing impacts on biodiversity on a global scale. Building on existing models that seek to quantify the impacts of human activities on biodiversity, the herein proposed methodological framework consists of 2 components: a habitat factor for 14 major habitat types and the impact on the biodiversity status in those major habitat types. The habitat factor is calculated by means of indicators that characterize each habitat. The biodiversity status depends on parameters from impact categories. The impact functions, relating these different parameters to a given response in the biodiversity status, rely on expert judgments. To ensure the applicability for LCA practitioners, the components of the framework can be regionalized on a country scale for which LCA inventory data is more readily available. The weighting factors for the 14 major habitat types range from 0.63 to 1.82. By means of area weighting of the major habitat types in a country, country-specific weighting factors are calculated. In order to demonstrate the main part of the framework, examples of impact functions are given for the categories "freshwater eutrophication" and "freshwater ecotoxicity" in 1 major habitat type. The results confirm suitability of the methodological framework. The major advantages are the framework's user-friendliness, given that data can be used from LCA databases directly, and the complete inclusion of all levels of biodiversity (genetic, species, and ecosystem). It is applicable for the whole world and a wide range of impact categories. Integr Environ Assess Manag 2018;14:282-297. �

Characterising and predicting benthic biodiversity for conservation planning in deepwater environments.

Science.gov (United States)

Dunstan, Piers K; Althaus, Franziska; Williams, Alan; Bax, Nicholas J

2012-01-01

Understanding patterns of biodiversity in deep sea systems is increasingly important because human activities are extending further into these areas. However, obtaining data is difficult, limiting the ability of science to inform management decisions. We have used three different methods of quantifying biodiversity to describe patterns of biodiversity in an area that includes two marine reserves in deep water off southern Australia. We used biological data collected during a recent survey, combined with extensive physical data to model, predict and map three different attributes of biodiversity: distributions of common species, beta diversity and rank abundance distributions (RAD). The distribution of each of eight common species was unique, although all the species respond to a depth-correlated physical gradient. Changes in composition (beta diversity) were large, even between sites with very similar environmental conditions. Composition at any one site was highly uncertain, and the suite of species changed dramatically both across and down slope. In contrast, the distributions of the RAD components of biodiversity (community abundance, richness, and evenness) were relatively smooth across the study area, suggesting that assemblage structure (i.e. the distribution of abundances of species) is limited, irrespective of species composition. Seamounts had similar biodiversity based on metrics of species presence, beta diversity, total abundance, richness and evenness to the adjacent continental slope in the same depth ranges. These analyses suggest that conservation objectives need to clearly identify which aspects of biodiversity are valued, and employ an appropriate suite of methods to address these aspects, to ensure that conservation goals are met.

Satellite sensor requirements for monitoring essential biodiversity variables of coastal ecosystems

Science.gov (United States)

The biodiversity and high productivity of coastal terrestrial and aquatic habitats are the foundation for important benefits to human societies around the world. These globally distributed habitats need frequent and broad systematic assessments, but field surveys only cover a sma...

Systematic temporal patterns in the relationship between housing development and forest bird biodiversity.

Science.gov (United States)

Pidgeon, Anna M; Flather, Curtis H; Radeloff, Volker C; Lepczyk, Christopher A; Keuler, Nicholas S; Wood, Eric M; Stewart, Susan I; Hammer, Roger B

2014-10-01

As people encroach increasingly on natural areas, one question is how this affects avian biodiversity. The answer to this is partly scale-dependent. At broad scales, human populations and biodiversity concentrate in the same areas and are positively associated, but at local scales people and biodiversity are negatively associated with biodiversity. We investigated whether there is also a systematic temporal trend in the relationship between bird biodiversity and housing development. We used linear regression to examine associations between forest bird species richness and housing growth in the conterminous United States over 30 years. Our data sources were the North American Breeding Bird Survey and the 2000 decennial U.S. Census. In the 9 largest forested ecoregions, housing density increased continually over time. Across the conterminous United States, the association between bird species richness and housing density was positive for virtually all guilds except ground nesting birds. We found a systematic trajectory of declining bird species richness as housing increased through time. In more recently developed ecoregions, where housing density was still low, the association with bird species richness was neutral or positive. In ecoregions that were developed earlier and where housing density was highest, the association of housing density with bird species richness for most guilds was negative and grew stronger with advancing decades. We propose that in general the relationship between human settlement and biodiversity over time unfolds as a 2-phase process. The first phase is apparently innocuous; associations are positive due to coincidence of low-density housing with high biodiversity. The second phase is highly detrimental to biodiversity, and increases in housing density are associated with biodiversity losses. The long-term effect on biodiversity depends on the final housing density. This general pattern can help unify our understanding of the relationship

Funding begets biodiversity

DEFF Research Database (Denmark)

Ahrends, Antje; Burgess, Neil David; Gereau, Roy E.

2011-01-01

Aim Effective conservation of biodiversity relies on an unbiased knowledge of its distribution. Conservation priority assessments are typically based on the levels of species richness, endemism and threat. Areas identified as important receive the majority of conservation investments, often...... facilitating further research that results in more species discoveries. Here, we test whether there is circularity between funding and perceived biodiversity, which may reinforce the conservation status of areas already perceived to be important while other areas with less initial funding may remain overlooked......, and variances decomposed in partial regressions. Cross-correlations are used to assess whether perceived biodiversity drives funding or vice versa. Results Funding explained 65% of variation in perceived biodiversity patterns – six times more variation than accounted for by 34 candidate environmental factors...

Biodiversity and Climate Modeling Workshop Series: Identifying gaps and needs for improving large-scale biodiversity models

Science.gov (United States)

Weiskopf, S. R.; Myers, B.; Beard, T. D.; Jackson, S. T.; Tittensor, D.; Harfoot, M.; Senay, G. B.

2017-12-01

At the global scale, well-accepted global circulation models and agreed-upon scenarios for future climate from the Intergovernmental Panel on Climate Change (IPCC) are available. In contrast, biodiversity modeling at the global scale lacks analogous tools. While there is great interest in development of similar bodies and efforts for international monitoring and modelling of biodiversity at the global scale, equivalent modelling tools are in their infancy. This lack of global biodiversity models compared to the extensive array of general circulation models provides a unique opportunity to bring together climate, ecosystem, and biodiversity modeling experts to promote development of integrated approaches in modeling global biodiversity. Improved models are needed to understand how we are progressing towards the Aichi Biodiversity Targets, many of which are not on track to meet the 2020 goal, threatening global biodiversity conservation, monitoring, and sustainable use. We brought together biodiversity, climate, and remote sensing experts to try to 1) identify lessons learned from the climate community that can be used to improve global biodiversity models; 2) explore how NASA and other remote sensing products could be better integrated into global biodiversity models and 3) advance global biodiversity modeling, prediction, and forecasting to inform the Aichi Biodiversity Targets, the 2030 Sustainable Development Goals, and the Intergovernmental Platform on Biodiversity and Ecosystem Services Global Assessment of Biodiversity and Ecosystem Services. The 1st In-Person meeting focused on determining a roadmap for effective assessment of biodiversity model projections and forecasts by 2030 while integrating and assimilating remote sensing data and applying lessons learned, when appropriate, from climate modeling. Here, we present the outcomes and lessons learned from our first E-discussion and in-person meeting and discuss the next steps for future meetings.

Biodiversity and Climate Change

International Nuclear Information System (INIS)

Onyango, J.C.O.; Ojoo-Massawa, E.; Abira, M.A.

1997-01-01

Biological diversity or biodiversity is crucial for ecological stability including regulation of climate change, recreational and medicinal use; and scientific advancement. Kenya like other developing countries, especially, those in Sub-Saharan Africa, will continue to depend greatly on her biodiversity for present and future development. This important resource must, therefore be conserved. This chapter presents an overview of Kenya's biodiversity; its importance and initiatives being undertaken for its conservation; and in detail, explores issues of climate change and biodiversity, concentrating on impacts of climate change

Biodiverse planting for carbon and biodiversity on indigenous land.

Science.gov (United States)

Renwick, Anna R; Robinson, Catherine J; Martin, Tara G; May, Tracey; Polglase, Phil; Possingham, Hugh P; Carwardine, Josie

2014-01-01

Carbon offset mechanisms have been established to mitigate climate change through changes in land management. Regulatory frameworks enable landowners and managers to generate saleable carbon credits on domestic and international markets. Identifying and managing the associated co-benefits and dis-benefits involved in the adoption of carbon offset projects is important for the projects to contribute to the broader goal of sustainable development and the provision of benefits to the local communities. So far it has been unclear how Indigenous communities can benefit from such initiatives. We provide a spatial analysis of the carbon and biodiversity potential of one offset method, planting biodiverse native vegetation, on Indigenous land across Australia. We discover significant potential for opportunities for Indigenous communities to achieve carbon sequestration and biodiversity goals through biodiverse plantings, largely in southern and eastern Australia, but the economic feasibility of these projects depend on carbon market assumptions. Our national scale cost-effectiveness analysis is critical to enable Indigenous communities to maximise the benefits available to them through participation in carbon offset schemes.

The Biodiversity Informatics Potential Index

Science.gov (United States)

2011-01-01

Background Biodiversity informatics is a relatively new discipline extending computer science in the context of biodiversity data, and its development to date has not been uniform throughout the world. Digitizing effort and capacity building are costly, and ways should be found to prioritize them rationally. The proposed 'Biodiversity Informatics Potential (BIP) Index' seeks to fulfill such a prioritization role. We propose that the potential for biodiversity informatics be assessed through three concepts: (a) the intrinsic biodiversity potential (the biological richness or ecological diversity) of a country; (b) the capacity of the country to generate biodiversity data records; and (c) the availability of technical infrastructure in a country for managing and publishing such records. Methods Broadly, the techniques used to construct the BIP Index were rank correlation, multiple regression analysis, principal components analysis and optimization by linear programming. We built the BIP Index by finding a parsimonious set of country-level human, economic and environmental variables that best predicted the availability of primary biodiversity data accessible through the Global Biodiversity Information Facility (GBIF) network, and constructing an optimized model with these variables. The model was then applied to all countries for which sufficient data existed, to obtain a score for each country. Countries were ranked according to that score. Results Many of the current GBIF participants ranked highly in the BIP Index, although some of them seemed not to have realized their biodiversity informatics potential. The BIP Index attributed low ranking to most non-participant countries; however, a few of them scored highly, suggesting that these would be high-return new participants if encouraged to contribute towards the GBIF mission of free and open access to biodiversity data. Conclusions The BIP Index could potentially help in (a) identifying countries most likely to

Essential Biodiversity Variables: A framework for communication between the biodiversity community and space agencies

Science.gov (United States)

Leidner, A. K.; Skidmore, A. K.; Turner, W. W.; Geller, G. N.

2017-12-01

The biodiversity community is working towards developing a consensus on a set of Essential Biodiversity Variables (EBVs) that can be used to measure and monitor biodiversity change over time. These EBVs will inform research, modeling, policy, and assessment efforts. The synoptic coverage provided by satellite data make remote sensing a particularly important observation tool to inform many EBVs. Biodiversity is a relatively new subject matter for space agencies, and thus the definition, description, and requirements of EBVs with a significant remote sensing component can foster ways for the biodiversity community to clearly and concisely communicate observational needs to space agencies and the Committee on Earth Observing Satellites (CEOS, the international coordinating body for civilian space agencies). Here, we present an overview of EBVs with a particular emphasis on those for which remote sensing will play a significant role and also report on the results of recent workshops to prioritize and refine EBVs. Our goal is to provide a framework for the biodiversity community to coalesce around a set of observational needs to convey to space agencies. Compared to many physical science disciplines, the biodiversity community represents a wide range of sub-disciplines and organizations (academia, non-governmental organizations, research institutes, national and local natural resource management agencies, etc.), which creates additional challenges when communicating needs to space agencies unfamiliar with the topic. EBVs thus offer a communication pathway that could increase awareness within space agencies of the uses of remote sensing for biodiversity research and applications, which in turn could foster greater use of remote sensing in the broader biodiversity community.

Making the case for biodiversity in South Africa: Re-framing biodiversity communications

OpenAIRE

Maze, Kristal; Barnett, Mandy; Botts, Emily A.; Stephens, Anthea; Freedman, Mike; Guenther, Lars

2016-01-01

Background: Biodiversity education and public awareness do not always contain the motivational messages that inspire action amongst decision-makers. Traditional messages from the biodiversity sector are often framed around threat, with a generally pessimistic tone. Aspects of social marketing can be used to support positive messaging that is more likely to inspire action amongst the target audience. Objectives: The South African biodiversity sector embarked on a market research process to ...

Household location choices: implications for biodiversity conservation.

Science.gov (United States)

Peterson, M Nils; Chen, Xiaodong; Liu, Jianguo

2008-08-01

Successful conservation efforts require understanding human behaviors that directly affect biodiversity. Choice of household location represents an observable behavior that has direct effects on biodiversity conservation, but no one has examined the sociocultural predictors of this choice relative to its environmental impacts. We conducted a case study of the Teton Valley of Idaho and Wyoming (U.S.A.) that (1) explored relationships between sociodemographic variables, environmental attitudes, and the environmental impact of household location choices, (2) assessed the potential for small household sizes in natural areas to multiply the environmental impacts of household location decisions, and (3) evaluated how length of residency predicted the environmental attitudes of people living in natural areas. We collected sociodemographic data, spatial coordinates, and land-cover information in a survey of 416 households drawn from a random sample of Teton Valley residents (95% compliance rate). Immigrants (respondents not born in the study area) with the lowest education levels and least environmentally oriented attitudes lived in previously established residential areas in disproportionately high numbers, and older and more educated immigrants with the most environmentally oriented attitudes lived in natural areas in disproportionately high numbers. Income was not a significant predictor of household location decisions. Those living in natural areas had more environmental impact per person because of the location and because small households (educated, and potentially growing more environmentally oriented, these patterns are troubling for biodiversity conservation. Our results demonstrate a need for environmentalists to make household location decisions that reflect their environmental attitudes and future research to address how interactions between education level, environmental attitudes, population aging, and household location choices influence biodiversity

Fish Biodiversity Patterns in Reef Communities of the Southeastern Coast of Brazil

Directory of Open Access Journals (Sweden)

Ralf Riedel

2015-10-01

Full Text Available Marine Protected Areas are increasingly becoming a tool of choice for conservation and management of marine resources and ecosystems. Data on biodiversity are necessary to assist in establishing protected areas for conservation objectives to be met. Toward that effect, we investigated reef biodiversity patterns in three large-scale coastal regions of Brazil. The study areas comprised of an upwelling region, an adjacent high impacted region, and a more distant marine park. We surveyed four reef sites in each study region. Fish species and abundance, substrate relief, and water temperature were recorded during the surveys. Biodiversity was estimated using Simpson’s and Shannon’s indices on species richness and abundance. Fish diversity was highest at the upwelling area. No difference in diversity was observed between the high impacted region and the marine park. No substrate relief patterns were found. Temperature readings showed higher frequency of low temperature episodic events at the upwelling region. Our results favor the upwelling region for establishment of a Marine Protected Area. Moreover, the similar diversity between the high impacted region and the marine park showed evidence of spillover effects from the upwelling into the high impacted region, further demonstrating the importance of the upwelling region for conservation.

Reconciling biodiversity and carbon conservation.

Science.gov (United States)

Thomas, Chris D; Anderson, Barbara J; Moilanen, Atte; Eigenbrod, Felix; Heinemeyer, Andreas; Quaife, Tristan; Roy, David B; Gillings, Simon; Armsworth, Paul R; Gaston, Kevin J

2013-05-01

Climate change is leading to the development of land-based mitigation and adaptation strategies that are likely to have substantial impacts on global biodiversity. Of these, approaches to maintain carbon within existing natural ecosystems could have particularly large benefits for biodiversity. However, the geographical distributions of terrestrial carbon stocks and biodiversity differ. Using conservation planning analyses for the New World and Britain, we conclude that a carbon-only strategy would not be effective at conserving biodiversity, as have previous studies. Nonetheless, we find that a combined carbon-biodiversity strategy could simultaneously protect 90% of carbon stocks (relative to a carbon-only conservation strategy) and > 90% of the biodiversity (relative to a biodiversity-only strategy) in both regions. This combined approach encapsulates the principle of complementarity, whereby locations that contain different sets of species are prioritised, and hence disproportionately safeguard localised species that are not protected effectively by carbon-only strategies. It is efficient because localised species are concentrated into small parts of the terrestrial land surface, whereas carbon is somewhat more evenly distributed; and carbon stocks protected in one location are equivalent to those protected elsewhere. Efficient compromises can only be achieved when biodiversity and carbon are incorporated together within a spatial planning process. © 2012 John Wiley & Sons Ltd/CNRS.

Some aspects of socio-economic activities that affect biodiversity of ...

African Journals Online (AJOL)

This paper examines the socio-economic activities of man along the coastal wetlands of Lagos State with a view of assessing the resultant effect on the Biodiversity of the area. For the benefit of this study, the area was divided into three zones. The procedures adopted were preliminary interview, market survey and structural ...

Coupled UV-exposure and microbial decomposition improves measures of organic matter degradation and light models in humic lake

DEFF Research Database (Denmark)

Madsen-Østerbye, Mikkel; Kragh, Theis; Pedersen, Ole

2018-01-01

Increasing terrestrial input of colored dissolved organic matter (CDOM) to temperate softwater lakes has reduced transparency, distribution of pristine rosette plants and overall biodiversity in recent decades. We examined microbial and UV-induced reduction of absorption by CDOM and dissolved org...

Founder takes all: density-dependent processes structure biodiversity.

Science.gov (United States)

Waters, Jonathan M; Fraser, Ceridwen I; Hewitt, Godfrey M

2013-02-01

Density-dependent processes play a key role in the spatial structuring of biodiversity. Specifically, interrelated demographic processes, such as gene surfing, high-density blocking, and competitive exclusion, can generate striking geographic contrasts in the distributions of genes and species. Here, we propose that well-studied evolutionary and ecological biogeographic patterns of postglacial recolonization, progressive island colonization, microbial sectoring, and even the 'Out of Africa' pattern of human expansion, are fundamentally similar, underpinned by a 'founder takes all' density-dependent principle. Additionally, we hypothesize that older historic constraints of density-dependent processes are seen today in the dramatic biogeographic shifts that occur in response to human-mediated extinction events, whereby surviving lineages rapidly expand their ranges to replace extinct sister taxa. Copyright © 2012 Elsevier Ltd. All rights reserved.

Birds as biodiversity surrogates

DEFF Research Database (Denmark)

Larsen, Frank Wugt; Bladt, Jesper Stentoft; Balmford, Andrew

2012-01-01

1. Most biodiversity is still unknown, and therefore, priority areas for conservation typically are identified based on the presence of surrogates, or indicator groups. Birds are commonly used as surrogates of biodiversity owing to the wide availability of relevant data and their broad popular...... and applications.?Good surrogates of biodiversity are necessary to help identify conservation areas that will be effective in preventing species extinctions. Birds perform fairly well as surrogates in cases where birds are relatively speciose, but overall effectiveness will be improved by adding additional data...... from other taxa, in particular from range-restricted species. Conservation solutions with focus on birds as biodiversity surrogate could therefore benefit from also incorporating species data from other taxa....

Rocky road in the Rockies: Challenges to biodiversity

Science.gov (United States)

Tomback, Diana F.; Kendall, Katherine C.; Baron, Jill S.

2002-01-01

degree of natural ecosystem processes and preserve natural biodiversity in light of these challenges, Americans and Canadians are faced with the need for intensive, hands-on management of both ecosystems and selected plant and animal populations. In this chapter, we first discuss the primary issues regarding the biodiversity of the Rocky Mountains, including the Rocky Mountain portions of Arizona, Colorado, Idaho, Montana, New Mexico, Utah, Wyoming, British Columbia, and Alberta. Next, we survey groups of organisms to examine their status and special problems. Finally, we touch on major challenges to biodiversity that loom in the near future. Given that entire books may be written on these issues, the discussion is brief and general, but with case histories for more detailed examples.

Recovering biodiversity knowledge

NARCIS (Netherlands)

Meijerink, G.W.; Smolders, H.; Sours, S.; Pou, S.

2005-01-01

Cambodian¿s civil wars have seriously affected the country¿s agro-biodiversity and the farmers¿ traditional knowledge in this field. The PEDIGREA project aims at conserving on-farm agro-biodiversity conservation and in Cambodia it focuses on vegetable diversity. It tries to link the preservation of

Microbial Resources and Enological Significance: Opportunities and Benefits

Directory of Open Access Journals (Sweden)

Leonardo Petruzzi

2017-06-01

Full Text Available Among the innovative trends in the wine sector, the continuous exploration of enological properties associated with wine microbial resources represents a cornerstone driver of quality improvement. Since the advent of starter cultures technology, the attention has been focused on intraspecific biodiversity within the primary species responsible for alcoholic fermentation (Saccharomyces cerevisiae and, subsequently, for the so-called ‘malolactic fermentation’ (Oenococcus oeni. However, in the last decade, a relevant number of studies proposed the enological exploitation of an increasing number of species (e.g., non-Saccharomyces yeasts associated with spontaneous fermentation in wine. These new species/strains may provide technological solutions to specific problems and/or improve sensory characteristics, such as complexity, mouth-feel and flavors. This review offers an overview of the available information on the enological/protechnological significance of microbial resources associated with winemaking, summarizing the opportunities and the benefits associated with the enological exploitation of this microbial potential. We discuss proposed solutions to improve quality and safety of wines (e.g., alternative starter cultures, multistrains starter cultures and future perspectives.

Microbial Resources and Enological Significance: Opportunities and Benefits

Science.gov (United States)

Petruzzi, Leonardo; Capozzi, Vittorio; Berbegal, Carmen; Corbo, Maria R.; Bevilacqua, Antonio; Spano, Giuseppe; Sinigaglia, Milena

2017-01-01

Among the innovative trends in the wine sector, the continuous exploration of enological properties associated with wine microbial resources represents a cornerstone driver of quality improvement. Since the advent of starter cultures technology, the attention has been focused on intraspecific biodiversity within the primary species responsible for alcoholic fermentation (Saccharomyces cerevisiae) and, subsequently, for the so-called ‘malolactic fermentation’ (Oenococcus oeni). However, in the last decade, a relevant number of studies proposed the enological exploitation of an increasing number of species (e.g., non-Saccharomyces yeasts) associated with spontaneous fermentation in wine. These new species/strains may provide technological solutions to specific problems and/or improve sensory characteristics, such as complexity, mouth-feel and flavors. This review offers an overview of the available information on the enological/protechnological significance of microbial resources associated with winemaking, summarizing the opportunities and the benefits associated with the enological exploitation of this microbial potential. We discuss proposed solutions to improve quality and safety of wines (e.g., alternative starter cultures, multistrains starter cultures) and future perspectives. PMID:28642742

Associations among Wine Grape Microbiome, Metabolome, and Fermentation Behavior Suggest Microbial Contribution to Regional Wine Characteristics.

Science.gov (United States)

Bokulich, Nicholas A; Collins, Thomas S; Masarweh, Chad; Allen, Greg; Heymann, Hildegarde; Ebeler, Susan E; Mills, David A

2016-06-14

Regionally distinct wine characteristics (terroir) are an important aspect of wine production and consumer appreciation. Microbial activity is an integral part of wine production, and grape and wine microbiota present regionally defined patterns associated with vineyard and climatic conditions, but the degree to which these microbial patterns associate with the chemical composition of wine is unclear. Through a longitudinal survey of over 200 commercial wine fermentations, we demonstrate that both grape microbiota and wine metabolite profiles distinguish viticultural area designations and individual vineyards within Napa and Sonoma Counties, California. Associations among wine microbiota and fermentation characteristics suggest new links between microbiota, fermentation performance, and wine properties. The bacterial and fungal consortia of wine fermentations, composed from vineyard and winery sources, correlate with the chemical composition of the finished wines and predict metabolite abundances in finished wines using machine learning models. The use of postharvest microbiota as an early predictor of wine chemical composition is unprecedented and potentially poses a new paradigm for quality control of agricultural products. These findings add further evidence that microbial activity is associated with wine terroir Wine production is a multi-billion-dollar global industry for which microbial control and wine chemical composition are crucial aspects of quality. Terroir is an important feature of consumer appreciation and wine culture, but the many factors that contribute to terroir are nebulous. We show that grape and wine microbiota exhibit regional patterns that correlate with wine chemical composition, suggesting that the grape microbiome may influence terroir In addition to enriching our understanding of how growing region and wine properties interact, this may provide further economic incentive for agricultural and enological practices that maintain regional

Achieving Aichi Biodiversity Target 11 to improve the performance of protected areas and conserve freshwater biodiversity

Science.gov (United States)

Diego Juffe-Bignoli; Ian Harrison; Stuart HM Butchart; Rebecca Flitcroft; Virgilio Hermoso; Harry Jonas; Anna Lukasiewicz; Michele Thieme; Eren Turak; Heather Bingham; James Dalton; William Darwall; Marine Deguignet; Nigel Dudley; Royal Gardner; Jonathan Higgins; Ritesh Kumar; Simon Linke; G Randy Milton; Jamie Pittock; Kevin G Smith; Arnout van Soesbergen

2016-01-01

1. The Strategic Plan for Biodiversity (2011–2020), adopted at the 10th meeting of the Conference of the Parties to the Convention on Biological Diversity, sets 20 Aichi Biodiversity Targets to be met by 2020 to address biodiversity loss and ensure its sustainable and equitable use. Aichi Biodiversity Target 11 describes what an improved conservation network would look...

Astrobiology and Microbial Diversity Websites at MBL

Science.gov (United States)

Bahr, M.; Bordenstein, S. R.

2006-12-01

The NASA Astrobiology Institute (NAI) mission is to study the origin, evolution and future of life in the Universe. The MBL Astrobiology team explores the evolution and interaction of genomes of diverse organisms that play significant roles in environmental biology over evolutionary time scales. Communication about our research includes the personal contact of teacher workshops, and the development of web-based resources. Microbial Life Educational Resources (MLER) provides an expanding internet resource about the ecology, diversity and evolution for students, K-12 teachers, university faculty, and the general public. MLER includes websites, PowerPoint presentations, teaching activities, data sets, and other useful materials for creating or enhancing courses related to astrobiology. Our second site, micro*scope (http://microscope.mbl.edu), has images of microbes, classification schemes, descriptions of organisms, talks and other educational resources to improve awareness of the biodiversity of our microbial partners.

Microbial functional diversity associated with plant litter decomposition along a climatic gradient.

Science.gov (United States)

Sherman, Chen; Steinberger, Yosef

2012-08-01

Predicted changes in climate associated with increased greenhouse gas emissions can cause increases in global mean temperature and changes in precipitation regimes. These changes may affect key soil processes, e.g., microbial CO(2) evolution and biomass, mineralization rates, primary productivity, biodiversity, and litter decomposition, which play an important role in carbon and nutrient cycling in terrestrial ecosystems. Our study examined the changes in litter microbial communities and decomposition along a climatic gradient, ranging from arid desert to humid Mediterranean regions in Israel. Wheat straw litter bags were placed in arid, semi-arid, Mediterranean, and humid Mediterranean sites. Samples were collected seasonally over a 2-year period in order to evaluate mass loss, litter moisture, C/N ratio, bacterial colony-forming units (CFUs), microbial CO(2) evolution and biomass, microbial functional diversity, and catabolic profile. Decomposition rate was the highest during the first year of the study at the Mediterranean and arid sites. Community-level physiological profile and microbial biomass were the highest in summer, while bacterial CFUs were the highest in winter. Microbial functional diversity was found to be highest at the humid Mediterranean site, whereas substrate utilization increased at the arid site. Our results support the assumption that climatic factors control litter degradation and regulate microbial activity.

Linking the Gut Microbial Ecosystem with the Environment: Does Gut Health Depend on Where We Live?

Directory of Open Access Journals (Sweden)

Nishat Tasnim

2017-10-01

Full Text Available Global comparisons reveal a decrease in gut microbiota diversity attributed to Western diets, lifestyle practices such as caesarian section, antibiotic use and formula-feeding of infants, and sanitation of the living environment. While gut microbial diversity is decreasing, the prevalence of chronic inflammatory diseases such as inflammatory bowel disease, diabetes, obesity, allergies and asthma is on the rise in Westernized societies. Since the immune system development is influenced by microbial components, early microbial colonization may be a key factor in determining disease susceptibility patterns later in life. Evidence indicates that the gut microbiota is vertically transmitted from the mother and this affects offspring immunity. However, the role of the external environment in gut microbiome and immune development is poorly understood. Studies show that growing up in microbe-rich environments, such as traditional farms, can have protective health effects on children. These health-effects may be ablated due to changes in the human lifestyle, diet, living environment and environmental biodiversity as a result of urbanization. Importantly, if early-life exposure to environmental microbes increases gut microbiota diversity by influencing patterns of gut microbial assembly, then soil biodiversity loss due to land-use changes such as urbanization could be a public health threat. Here, we summarize key questions in environmental health research and discuss some of the challenges that have hindered progress toward a better understanding of the role of the environment on gut microbiome development.

Forecasting the future of biodiversity

DEFF Research Database (Denmark)

Fitzpatrick, M. C.; Sanders, Nate; Ferrier, Simon

2011-01-01

, but their application to forecasting climate change impacts on biodiversity has been limited. Here we compare forecasts of changes in patterns of ant biodiversity in North America derived from ensembles of single-species models to those from a multi-species modeling approach, Generalized Dissimilarity Modeling (GDM...... climate change impacts on biodiversity....

Biodiversity promotes tree growth during succession in subtropical forest.

Directory of Open Access Journals (Sweden)

Martin Barrufol

Full Text Available Losses of plant species diversity can affect ecosystem functioning, with decreased primary productivity being the most frequently reported effect in experimental plant assemblages, including tree plantations. Less is known about the role of biodiversity in natural ecosystems, including forests, despite their importance for global biogeochemical cycling and climate. In general, experimental manipulations of tree diversity will take decades to yield final results. To date, biodiversity effects in natural forests therefore have only been reported from sample surveys or meta-analyses with plots not initially selected for diversity. We studied biomass and growth of subtropical forests stands in southeastern China. Taking advantage of variation in species recruitment during secondary succession, we adopted a comparative study design selecting forest plots to span a gradient in species richness. We repeatedly censored the stem diameter of two tree size cohorts, comprising 93 species belonging to 57 genera and 33 families. Tree size and growth were analyzed in dependence of species richness, the functional diversity of growth-related traits, and phylogenetic diversity, using both general linear and structural equation modeling. Successional age covaried with diversity, but differently so in the two size cohorts. Plot-level stem basal area and growth were positively related with species richness, while growth was negatively related to successional age. The productivity increase in species-rich, functionally and phylogenetically diverse plots was driven by both larger mean sizes and larger numbers of trees. The biodiversity effects we report exceed those from experimental studies, sample surveys and meta-analyses, suggesting that subtropical tree diversity is an important driver of forest productivity and re-growth after disturbance that supports the provision of ecological services by these ecosystems.

Copahue Geothermal System: A Volcanic Environment with Rich Extreme Prokaryotic Biodiversity.

Science.gov (United States)

Urbieta, María Sofía; Porati, Graciana Willis; Segretín, Ana Belén; González-Toril, Elena; Giaveno, María Alejandra; Donati, Edgardo Rubén

2015-07-08

The Copahue geothermal system is a natural extreme environment located at the northern end of the Cordillera de los Andes in Neuquén province in Argentina. The geochemistry and consequently the biodiversity of the area are dominated by the activity of the Copahue volcano. The main characteristic of Copahue is the extreme acidity of its aquatic environments; ponds and hot springs of moderate and high temperature as well as Río Agrio. In spite of being an apparently hostile location, the prokaryotic biodiversity detected by molecular ecology techniques as well as cultivation shows a rich and diverse environment dominated by acidophilic, sulphur oxidising bacteria or archaea, depending on the conditions of the particular niche studied. In microbial biofilms, found in the borders of the ponds where thermal activity is less intense, the species found are completely different, with a high presence of cyanobacteria and other photosynthetic species. Our results, collected during more than 10 years of work in Copahue, have enabled us to outline geomicrobiological models for the different environments found in the ponds and Río Agrio. Besides, Copahue seems to be the habitat of novel, not yet characterised autochthonous species, especially in the domain Archaea.

Community Structure and Activity of a Highly Dynamic and Nutrient-Limited Hypersaline Microbial Mat in Um Alhool Sabkha, Qatar

KAUST Repository

Al-Thani, Roda; Alnajjar, Mohammad Ahmad; Al-Raei, Abdul Munem; Ferdelman, Tim; Thang, Nguyen M.; Shaikh, Ismail Al; Al-Ansi, Mehsin; de Beer, Dirk

2014-01-01

The Um Alhool area in Qatar is a dynamic evaporative ecosystem that receives seawater from below as it is surrounded by sand dunes. We investigated the chemical composition, the microbial activity and biodiversity of the four main layers (L1–L4

Biodiversity assessment at Department of Atomic Energy (DAE) campus, Kalpakkam

International Nuclear Information System (INIS)

Jahir Hussain, K.; Satpathy, K.K.; Prasad, M.V.R.; Ramesh, T.; Selvanayagam, M.

2008-01-01

A rapid assessment of biodiversity in the DAE campus, Kalpakkam was carried out. The entire DAE campus of 3000 acres, at Kalpakkam was divided into four representative plots comprising of different landscapes namely (1) undisturbed area with dense vegetation, (2) building area, (3) water bodies with riparian cover and (4) sandy area with meager vegetation for inventorying of charismatic terrestrial/semi-aquatic fauna viz., Mammals, Birds, Reptiles, Amphibians and Butterflies. For birds, early morning surveys were made whereas for mammals evening and night surveys were followed. Midday sampling was followed for butterflies and other animals. Each plot was surveyed twice in a week over a period of one year (April 07' to March 08'). Totally 128 species of animals were identified during the survey and it has highlighted the potential of biodiversity in the campus. The diversity of butterflies is remarkable. Twenty-two butterfly species were encountered. Frogs, toads, lizards and snakes are also diverse. Five species of frogs and one species of toad were recorded. Lizards are more diverse than snakes. Nine species of lizards were encountered. Calotus versicolor is abundant followed by common skink. Totally five species of snakes were recorded. Among them Common bronzedback and Green Vine Snake were predominant. Seventy species of birds were recorded during the survey period. Black crowned night heron, Common house crow, Great cormorant, Oriental white ibis, Painted stork, Cattle egret, Common mynah are more common. Sixteen species of mammals were encountered during the survey. Wild cattle, Jackal, Jungle cat, Toddy cat, Crested porcupine and Indian civet are the major wildlife found. Indian civet and Crested porcupine are elusive animals that are diminishing from wild and their presence at this campus is an indication of less human intervention. (author)

Children prioritize virtual exotic biodiversity over local biodiversity.

Directory of Open Access Journals (Sweden)

Jean-Marie Ballouard

Full Text Available Environmental education is essential to stem current dramatic biodiversity loss, and childhood is considered as the key period for developing awareness and positive attitudes toward nature. Children are strongly influenced by the media, notably the internet, about biodiversity and conservation issues. However, most media focus on a few iconic, appealing, and usually exotic species. In addition, virtual activities are replacing field experiences. This situation may curb children knowledge and concerns about local biodiversity. Focusing our analyses on local versus exotic species, we examined the level of knowledge and the level of diversity of the animals that French schoolchildren are willing to protect, and whether these perceptions are mainly guided by information available in the internet. For that, we collected and compared two complementary data sets: 1 a questionnaire was administered to schoolchildren to assess their knowledge and consideration to protect animals, 2 an internet content analysis (i.e. Google searching sessions using keywords was performed to assess which animals are the most often represented. Our results suggest that the knowledge of children and their consideration to protect animal are mainly limited to internet contents, represented by a few exotic and charismatic species. The identification rate of local animals by schoolchildren was meager, suggesting a worrying disconnection from their local environment. Schoolchildren were more prone to protect "virtual" (unseen, exotic rather than local animal species. Our results reinforce the message that environmental education must also focus on outdoor activities to develop conservation consciousness and concerns about local biodiversity.

Geochemical and physical drivers of microbial community structure in hot spring ecosystems

Science.gov (United States)

Havig, J. R.; Hamilton, T. L.; Boyd, E. S.; Meyer-Dombard, D. R.; Shock, E.

2012-12-01

Microbial communities in natural systems are typically characterized using samples collected from a single time point, thereby neglecting the temporal dynamics that characterize natural systems. The composition of these communities obtained from single point samples is then related to the geochemistry and physical parameters of the environment. Since most microbial life is adapted to a relatively narrow ecological niche (multiplicity of physical and chemical parameters that characterize a local habitat), these assessments provide only modest insight into the controls on community composition. Temporal variation in temperature or geochemical composition would be expected to add another dimension to the complexity of niche space available to support microbial diversity, with systems that experience greater variation supporting a greater biodiversity until a point where the variability is too extreme. . Hot springs often exhibit significant temporal variation, both in physical as well as chemical characteristics. This is a result of subsurface processes including boiling, phase separation, and differential mixing of liquid and vapor phase constituents. These characteristics of geothermal systems, which vary significantly over short periods of time, provide ideal natural laboratories for investigating how i) the extent of microbial community biodiversity and ii) the composition of those communities are shaped by temporal fluctuations in geochemistry. Geochemical and molecular samples were collected from 17 temporally variable hot springs across Yellowstone National Park, Wyoming. Temperature measurements using data-logging thermocouples, allowing accurate determination of temperature maximums, minimums, and ranges for each collection site, were collected in parallel, along with multiple geochemical characterizations as conditions varied. There were significant variations in temperature maxima (54.5 to 90.5°C), minima (12.5 to 82.5°C), and range (3.5 to 77.5°C) for

Landscape Change and Microbial Response in the McMurdo Dry Valleys, Antarctica: Preliminary Results

Science.gov (United States)

Fountain, A. G.; Levy, J.; Gooseff, M. N.; Van Horn, D. J.; Obryk, M.; Pettersson, R.; Telling, J. W.; Glennie, C. L.

2017-12-01

Permafrost in the McMurdo Dry Valleys (MDV), Antarctica is ubiquitous with active layer depths ranging from a few cm at the highest elevations to 1 m near sea level. Although many landscapes in this region have been considered stable over millennia, ad-hoc field observations have documented extreme geomorphic changes in the valley bottoms over the past decade. To assess these changes across the region, we compared a lidar dataset surveyed in the austral summers of 2001-2002 against one surveyed in 2014-2015. Results showed that the vertical resolution of the surveys was resolution of the elevation differences and we ignored differences 1m) landscape changes, including stream channel incision into buried ice deposits (implying the advection of heat by stream water locally degrades thermokarst) and slope failures in thermokarst landforms from block failure and insolation-driven retreat. Smaller changes (bank erosion intercepted buried ice, or in thermokarst ponds. The magnitude and rate of change is much larger than observed previously in this otherwise stable and slowly changing environment. Biological surveys and experimental manipulations show that wetted soils host microbial communities different from those hosted by adjacent dry soils, and are hotspots of biodiversity highly susceptible to changing physical conditions. In all cases field-checked, the association of sediment and rock debris blanketing buried ice was noted, indicating these are the most vulnerable landscapes to climate warming. Ground penetrating radar mapping of buried ice showed, however, that not all buried ice is associated with landscape change due to the depth of burial, slope, and proximity to stream water. Similarly, modeling of soil temperatures suggests a spatial heterogeneity in warming rates across the valley bottom, as a consequence of microclimatic influences, topographic shading and moisture content. Collectively, these conditions imply that landscapes in the MDV will become

Dead wood for biodiversity - foresters torn between mistrust and commitment

International Nuclear Information System (INIS)

Deuffic, Philippe

2010-01-01

Dead wood is a key element in forest biodiversity, which is used as one of the indicators for sustainable development of forests. A survey was conducted among foresters and users in the Landes de Gascogne and ile-de-France areas so as to assess practises and social representations associated with dead wood. From the results of the survey, it appears that there is a diversity of practices and divergences about the implications connected with dead wood. The 64 respondents can be divided into roughly six groups (G1: 'industrial foresters', G2: the 'silvicultural foresters', G3: the 'remote foresters', G4: the 'environmentalist foresters', G5: the 'naturalists' and G6: the 'users'). Among other things, they can be differentiated by their management practises, their degree of knowledge about and concern with ecology, their social networks, their aesthetic judgment, their perception of risks and their economic requirements. While underscoring the scarce popularity on average of the biodiversity-related issues, this sociological survey also highlights: the need for a minimal regulatory framework to achieve integrated retention of dead wood, the serious concern of forest managers in the Landes with plant health risks associated with dead wood, and the need for a functional justification for keeping dead wood in the ecosystem. (authors)

Microbial diversity in sediment ecosystems (evaporites domes, microbial mats and crusts of hypersaline Laguna Tebenquiche, Salar de Atacama, Chile

Directory of Open Access Journals (Sweden)

Ana Beatriz Fernandez

2016-08-01

Full Text Available We combined nucleic acid-based molecular methods, biogeochemical measurements and physicochemical characteristics to investigate microbial sedimentary ecosystems of Laguna Tebenquiche, Atacama Desert, Chile. Molecular diversity and biogeochemistry of hypersaline microbial mats, rhizome-associated concretions and an endoevaporite were compared with: The V4 hypervariable region of the 16S rRNA gene was amplified by pyrosequencing to analyze the total microbial diversity (i.e., bacteria and archaea in bulk samples and, in addition, in detail on a millimeter scale in one microbial mat and in one evaporite. Archaea were more abundant than bacteria. Euryarchaeota was one of the most abundant phyla in all samples, and particularly dominant (97% of total diversity in the most lithified ecosystem, the evaporite. Most of the euryarchaeal OTUs could be assigned to the class Halobacteria or anaerobic and methanogenic archaea. Planctomycetes potentially also play a key role in mats and rhizome-associated concretions, notably the aerobic organoheterotroph members of the class Phycisphaerae. In addition to cyanobacteria, members of Chromatiales and possibly the candidate family Chlorotrichaceae contributed to photosynthetic carbon fixation. Other abundant uncultured taxa such as the candidate division MSBL1, the uncultured MBGB and the phylum Acetothermia potentially play an important metabolic role in these ecosystems. Lithifying microbial mats contained calcium carbonate precipitates, whereas endoevoporites consisted of gypsum and halite. Biogeochemical measurements revealed that based on depth profiles of O2 and sulfide, metabolic activities were much higher in the non-lithifying mat (peaking in the least lithified systems than in lithifying mats with the lowest activity in endoevaporites. This trend in decreasing microbial activity reflects the increase in salinity, which may play an important role in the biodiversity.

Options for promoting high-biodiversity REDD+

Energy Technology Data Exchange (ETDEWEB)

Swan, Steve; Mcnally, Richard; Grieg-Gran, Maryanne; Roe, Dilys; Mohammed, Essam Yassin

2011-11-15

International climate and biodiversity conventions agree that to be effective in the long term, strategies to reduce emissions from deforestation, forest degradation, conservation and enhancement of forest carbon stocks, and sustainable forest management (REDD+), must not undermine biodiversity. But how do countries achieve 'high-biodiversity REDD+' in practice? At a global level, options include immediate policy strengthening in international negotiations; promotion of co-benefit standards; and financial incentives and preferences for buying countries. At a national level, developing countries can also promote high-biodiversity REDD+ through more coherent policies; integrated planning; regulatory and economic instruments; and improved monitoring of biodiversity impacts.

Caribbean landscapes and their biodiversity

Science.gov (United States)

A. E. Lugo; E. H. Helmer; E. Santiago Valentín

2012-01-01

Both the biodiversity and the landscapes of the Caribbean have been greatly modified as a consequence of human activity. In this essay we provide an overview of the natural landscapes and biodiversity of the Caribbean and discuss how human activity has affected both. Our Caribbean geographic focus is on the insular Caribbean and the biodiversity focus is on the flora,...

Biodiversity monitoring in Europe: the EU FP7 EBONE project. European biodiversity observation NEtwork

CSIR Research Space (South Africa)

Lück-Vogel, Melanie

2008-09-01

Full Text Available submission Presentation Poster presentation A) Title Biodiversity Monitoring in Europe: The EU FP7 EBONE project European Biodiversity Observation NEtwork B) Short title EBONE - European Biodiversity Observation NEtwork C) Author(s) Vogel, M. (1... stream_source_info Vogel_2008.pdf.txt stream_content_type text/plain stream_size 3055 Content-Encoding UTF-8 stream_name Vogel_2008.pdf.txt Content-Type text/plain; charset=UTF-8 BIOTA AFRICA Congress 2008 Abstract...

"Bugs on Bugs": An Inquiry-Based, Collaborative Activity to Learn Arthropod & Microbial Biodiversity

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Lampert, Evan C.; Morgan, Jeanelle M.

2015-01-01

Diverse communities of arthropods and microbes provide humans with essential ecosystem goods and services. Arthropods are the most diverse and abundant macroscopic animals on the planet, and many remain to be discovered. Much less is known about microbial diversity, despite their importance as free-living species and as symbionts. We created…

Integrating movement ecology with biodiversity research - exploring new avenues to address spatiotemporal biodiversity dynamics.

Science.gov (United States)

Jeltsch, Florian; Bonte, Dries; Pe'er, Guy; Reineking, Björn; Leimgruber, Peter; Balkenhol, Niko; Schröder, Boris; Buchmann, Carsten M; Mueller, Thomas; Blaum, Niels; Zurell, Damaris; Böhning-Gaese, Katrin; Wiegand, Thorsten; Eccard, Jana A; Hofer, Heribert; Reeg, Jette; Eggers, Ute; Bauer, Silke

2013-01-01

Movement of organisms is one of the key mechanisms shaping biodiversity, e.g. the distribution of genes, individuals and species in space and time. Recent technological and conceptual advances have improved our ability to assess the causes and consequences of individual movement, and led to the emergence of the new field of 'movement ecology'. Here, we outline how movement ecology can contribute to the broad field of biodiversity research, i.e. the study of processes and patterns of life among and across different scales, from genes to ecosystems, and we propose a conceptual framework linking these hitherto largely separated fields of research. Our framework builds on the concept of movement ecology for individuals, and demonstrates its importance for linking individual organismal movement with biodiversity. First, organismal movements can provide 'mobile links' between habitats or ecosystems, thereby connecting resources, genes, and processes among otherwise separate locations. Understanding these mobile links and their impact on biodiversity will be facilitated by movement ecology, because mobile links can be created by different modes of movement (i.e., foraging, dispersal, migration) that relate to different spatiotemporal scales and have differential effects on biodiversity. Second, organismal movements can also mediate coexistence in communities, through 'equalizing' and 'stabilizing' mechanisms. This novel integrated framework provides a conceptual starting point for a better understanding of biodiversity dynamics in light of individual movement and space-use behavior across spatiotemporal scales. By illustrating this framework with examples, we argue that the integration of movement ecology and biodiversity research will also enhance our ability to conserve diversity at the genetic, species, and ecosystem levels.

Global Human Footprint on the Linkage between Biodiversity and Ecosystem Functioning in Reef Fishes

Science.gov (United States)

Mora, Camilo; Aburto-Oropeza, Octavio; Ayala Bocos, Arturo; Ayotte, Paula M.; Banks, Stuart; Bauman, Andrew G.; Beger, Maria; Bessudo, Sandra; Booth, David J.; Brokovich, Eran; Brooks, Andrew; Chabanet, Pascale; Cinner, Joshua E.; Cortés, Jorge; Cruz-Motta, Juan J.; Cupul Magaña, Amilcar; DeMartini, Edward E.; Edgar, Graham J.; Feary, David A.; Ferse, Sebastian C. A.; Friedlander, Alan M.; Gaston, Kevin J.; Gough, Charlotte; Graham, Nicholas A. J.; Green, Alison; Guzman, Hector; Hardt, Marah; Kulbicki, Michel; Letourneur, Yves; López Pérez, Andres; Loreau, Michel; Loya, Yossi; Martinez, Camilo; Mascareñas-Osorio, Ismael; Morove, Tau; Nadon, Marc-Olivier; Nakamura, Yohei; Paredes, Gustavo; Polunin, Nicholas V. C.; Pratchett, Morgan S.; Reyes Bonilla, Héctor; Rivera, Fernando; Sala, Enric; Sandin, Stuart A.; Soler, German; Stuart-Smith, Rick; Tessier, Emmanuel; Tittensor, Derek P.; Tupper, Mark; Usseglio, Paolo; Vigliola, Laurent; Wantiez, Laurent; Williams, Ivor; Wilson, Shaun K.; Zapata, Fernando A.

2011-01-01

Difficulties in scaling up theoretical and experimental results have raised controversy over the consequences of biodiversity loss for the functioning of natural ecosystems. Using a global survey of reef fish assemblages, we show that in contrast to previous theoretical and experimental studies, ecosystem functioning (as measured by standing biomass) scales in a non-saturating manner with biodiversity (as measured by species and functional richness) in this ecosystem. Our field study also shows a significant and negative interaction between human population density and biodiversity on ecosystem functioning (i.e., for the same human density there were larger reductions in standing biomass at more diverse reefs). Human effects were found to be related to fishing, coastal development, and land use stressors, and currently affect over 75% of the world's coral reefs. Our results indicate that the consequences of biodiversity loss in coral reefs have been considerably underestimated based on existing knowledge and that reef fish assemblages, particularly the most diverse, are greatly vulnerable to the expansion and intensity of anthropogenic stressors in coastal areas. PMID:21483714

Phylogenetic & Physiological Profiling of Microbial Communities of Contaminated Soils/Sediments: Identifying Microbial consortia...

Energy Technology Data Exchange (ETDEWEB)

Terence L. Marsh

2004-05-26

The goals of this study were: (1) survey the microbial community in soil samples from a site contaminated with heavy metals using new rapid molecular techniques that are culture-independent; (2) identify phylogenetic signatures of microbial populations that correlate with metal ion contamination; and (3) cultivate these diagnostic strains using traditional as well as novel cultivation techniques in order to identify organisms that may be of value in site evaluation/management or bioremediation.

Functional soil microbial diversity across Europe estimated by EEA, MicroResp and BIOLOG

DEFF Research Database (Denmark)

Winding, Anne; Rutgers, Michiel; Creamer, Rachel

consisting of 81 soil samples covering five Biogeograhical Zones and three land-uses in order to test the sensitivity, ease and cost of performance and biological significance of the data output. The techniques vary in how close they are to in situ functions; dependency on growth during incubation......Soil microorganisms are abundant and essential for the bio-geochemical processes of soil, soil quality and soil ecosystem services. All this is dependent on the actual functions the microbial communities are performing in the soil. Measuring soil respiration has for many years been the basis...... of estimating soil microbial activity. However, today several techniques are in use for determining microbial functional diversity and assessing soil biodiversity: Methods based on CO2 development by the microbes such as substrate induced respiration (SIR) on specific substrates have lead to the development...

Recovery of microbial community structure and functioning after wildfire in semi-arid environments: optimising methods for monitoring and assessment

Science.gov (United States)

Muñoz-Rojas, Miriam; Martini, Dylan; Erickson, Todd; Merritt, David; Dixon, Kingsley

2015-04-01

Introduction In semi-arid areas such as northern Western Australia, wildfires are a natural part of the environment and many ecosystems in these landscapes have evolved and developed a strong relationship with fire. Soil microbial communities play a crucial role in ecosystem processes by regulating the cycling of nutrients via decomposition, mineralization, and immobilization processes. Thus, the structure (e.g. soil microbial biomass) and functioning (e.g. soil microbial activity) of microbial communities, as well as their changes after ecosystem disturbance, can be useful indicators of soil quality and health recovery. In this research, we assess the impacts of fire on soil microbial communities and their recovery in a biodiverse semi-arid environment of Western Australia (Pilbara region). New methods for determining soil microbial respiration as an indicator of microbial activity and soil health are also tested. Methodology Soil samples were collected from 10 similar ecosystems in the Pilbara with analogous native vegetation, but differing levels of post-fire disturbance (i.e. 3 months, 1 year, 5, 7 and 14 years after wildfire). Soil microbial activity was measured with the Solvita test which determines soil microbial respiration rate based on the measurement of the CO2 burst of a dry soil after it is moistened. Soils were dried and re-wetted and a CO2 probe was inserted before incubation at constant conditions of 25°C during 24 h. Measurements were taken with a digital mini spectrometer. Microbial (bacteria and fungi) biomass and community composition were measured by phospholipid fatty acid analysis (PLFA). Results Immediately after the fire (i.e. 3 months), soil microbial activity and microbial biomass are similar to 14 years 'undisturbed' levels (53.18±3.68 ppm CO2-CO and 14.07±0.65 mg kg-1, respectively). However, after the first year post-fire, with larger plant productivity, microbial biomass and microbial activity increase rapidly, peaking after 5

Fractal Hypothesis of the Pelagic Microbial Ecosystem—Can Simple Ecological Principles Lead to Self-Similar Complexity in the Pelagic Microbial Food Web?

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Våge, Selina; Thingstad, T. Frede

2015-01-01

Trophic interactions are highly complex and modern sequencing techniques reveal enormous biodiversity across multiple scales in marine microbial communities. Within the chemically and physically relatively homogeneous pelagic environment, this calls for an explanation beyond spatial and temporal heterogeneity. Based on observations of simple parasite-host and predator-prey interactions occurring at different trophic levels and levels of phylogenetic resolution, we present a theoretical perspective on this enormous biodiversity, discussing in particular self-similar aspects of pelagic microbial food web organization. Fractal methods have been used to describe a variety of natural phenomena, with studies of habitat structures being an application in ecology. In contrast to mathematical fractals where pattern generating rules are readily known, however, identifying mechanisms that lead to natural fractals is not straight-forward. Here we put forward the hypothesis that trophic interactions between pelagic microbes may be organized in a fractal-like manner, with the emergent network resembling the structure of the Sierpinski triangle. We discuss a mechanism that could be underlying the formation of repeated patterns at different trophic levels and discuss how this may help understand characteristic biomass size-spectra that hint at scale-invariant properties of the pelagic environment. If the idea of simple underlying principles leading to a fractal-like organization of the pelagic food web could be formalized, this would extend an ecologists mindset on how biological complexity could be accounted for. It may furthermore benefit ecosystem modeling by facilitating adequate model resolution across multiple scales. PMID:26648929

Biodiversity conservation in agricultural landscapes

OpenAIRE

Josefsson, Jonas

2015-01-01

Agricultural industrialization alters rural landscapes in Europe, causing large-scale and rapid loss of important biodiversity. The principal instruments to protect farmland biodiversity are various agri-environmental measures (AEMs) in the EU Common Agricultural Policy (CAP). However, growing awareness of shortcomings to CAP biodiversity integration prompts examination of causes and potential solutions. This thesis assesses the importance of structural heterogeneity of crop and non-crop habi...

Making the case for biodiversity in South Africa: Re-framing biodiversity communications

Directory of Open Access Journals (Sweden)

Kristal Maze

2016-12-01

Conclusion: Based on the findings, a communications strategy known as ‘Making the case for biodiversity’ was developed that re-framed the economic, emotional and practical value propositions for biodiversity. The communications strategy has already resulted in greater political and economic attention towards biodiversity in South Africa.

Breaking boundaries for biodiversity : expanding the policy agenda to halt biodiversity loss

NARCIS (Netherlands)

Veen, M.P.; Sanders, M.E.; Tekelenburg, A.; Gerritsen, A.L.; Lörzing, J.A.; Brink, Th.

2010-01-01

Our assessment from the perspective of the Netherlands, a country in the temperate zone, showed a slightly positive picture, in line with the overall results for this zone. The loss of biodiversity in the Netherlands has been slowed down, but the European target – halting the loss of biodiversity –

EnviroAtlas - Biodiversity Metrics by 12-digit HUC for the Southwestern United States

Science.gov (United States)

This EnviroAtlas dataset was produced by a joint effort of New Mexico State University, US EPA, and the US Geological Survey (USGS) to support research and online mapping activities related to EnviroAtlas. Ecosystem services, i.e., services provided to humans from ecological systems, have become a key issue of this century in resource management, conservation planning, and environmental decision analysis. Mapping and quantifying ecosystem services have become strategic national interests for integrating ecology with economics to help understand the effects of human policies and actions and their subsequent impacts on both ecosystem function and human well-being. Some aspects of biodiversity are valued by humans in varied ways, and thus are important to include in any assessment that seeks to identify and quantify the benefits of ecosystems to humans. Some biodiversity metrics clearly reflect ecosystem services (e.g., abundance and diversity of harvestable species), whereas others may reflect indirect and difficult to quantify relationships to services (e.g., relevance of species diversity to ecosystem resilience, or cultural and aesthetic values). Wildlife habitat has been modeled at broad spatial scales and can be used to map a number of biodiversity metrics. We map 15 biodiversity metrics reflecting ecosystem services or other aspects of biodiversity for all vertebrate species except fish. Metrics include species richness for all vertebrates, specific taxon gr

EnviroAtlas - Biodiversity Metrics by 12-digit HUC for the Southeastern United States

Science.gov (United States)

This EnviroAtlas dataset was produced by a joint effort of New Mexico State University, US EPA, and the US Geological Survey (USGS) to support research and online mapping activities related to EnviroAtlas. Ecosystem services, i.e., services provided to humans from ecological systems, have become a key issue of this century in resource management, conservation planning, and environmental decision analysis. Mapping and quantifying ecosystem services have become strategic national interests for integrating ecology with economics to help understand the effects of human policies and actions and their subsequent impacts on both ecosystem function and human well-being. Some aspects of biodiversity are valued by humans in varied ways, and thus are important to include in any assessment that seeks to identify and quantify the benefits of ecosystems to humans. Some biodiversity metrics clearly reflect ecosystem services (e.g., abundance and diversity of harvestable species), whereas others may reflect indirect and difficult to quantify relationships to services (e.g., relevance of species diversity to ecosystem resilience, or cultural and aesthetic values). Wildlife habitat has been modeled at broad spatial scales and can be used to map a number of biodiversity metrics. We map 14 biodiversity metrics reflecting ecosystem services or other aspects of biodiversity for all vertebrate species except fish. Metrics include species richness for all vertebrates, specific taxon gr

Biodiversity in the Anthropocene: prospects and policy

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Mace, Georgina M.; Mouillot, David; Vause, James; Walpole, Matt

2016-01-01

Meeting the ever-increasing needs of the Earth’s human population without excessively reducing biological diversity is one of the greatest challenges facing humanity, suggesting that new approaches to biodiversity conservation are required. One idea rapidly gaining momentum—as well as opposition—is to incorporate the values of biodiversity into decision-making using economic methods. Here, we develop several lines of argument for how biodiversity might be valued, building on recent developments in natural science, economics and science-policy processes. Then we provide a synoptic guide to the papers in this special feature, summarizing recent research advances relevant to biodiversity valuation and management. Current evidence suggests that more biodiverse systems have greater stability and resilience, and that by maximizing key components of biodiversity we maximize an ecosystem’s long-term value. Moreover, many services and values arising from biodiversity are interdependent, and often poorly captured by standard economic models. We conclude that economic valuation approaches to biodiversity conservation should (i) account for interdependency and (ii) complement rather than replace traditional approaches. To identify possible solutions, we present a framework for understanding the foundational role of hard-to-quantify ‘biodiversity services’ in sustaining the value of ecosystems to humanity, and then use this framework to highlight new directions for pure and applied research. In most cases, clarifying the links between biodiversity and ecosystem services, and developing effective policy and practice for managing biodiversity, will require a genuinely interdisciplinary approach. PMID:27928040

Biodiversity in the Anthropocene: prospects and policy.

Science.gov (United States)

Seddon, Nathalie; Mace, Georgina M; Naeem, Shahid; Tobias, Joseph A; Pigot, Alex L; Cavanagh, Rachel; Mouillot, David; Vause, James; Walpole, Matt

2016-12-14

Meeting the ever-increasing needs of the Earth's human population without excessively reducing biological diversity is one of the greatest challenges facing humanity, suggesting that new approaches to biodiversity conservation are required. One idea rapidly gaining momentum-as well as opposition-is to incorporate the values of biodiversity into decision-making using economic methods. Here, we develop several lines of argument for how biodiversity might be valued, building on recent developments in natural science, economics and science-policy processes. Then we provide a synoptic guide to the papers in this special feature, summarizing recent research advances relevant to biodiversity valuation and management. Current evidence suggests that more biodiverse systems have greater stability and resilience, and that by maximizing key components of biodiversity we maximize an ecosystem's long-term value. Moreover, many services and values arising from biodiversity are interdependent, and often poorly captured by standard economic models. We conclude that economic valuation approaches to biodiversity conservation should (i) account for interdependency and (ii) complement rather than replace traditional approaches. To identify possible solutions, we present a framework for understanding the foundational role of hard-to-quantify 'biodiversity services' in sustaining the value of ecosystems to humanity, and then use this framework to highlight new directions for pure and applied research. In most cases, clarifying the links between biodiversity and ecosystem services, and developing effective policy and practice for managing biodiversity, will require a genuinely interdisciplinary approach. © 2016 The Author(s).

Response of soil microbial activity and biodiversity in soils polluted with different concentrations of cypermethrin insecticide.

Science.gov (United States)

Tejada, Manuel; García, Carlos; Hernández, Teresa; Gómez, Isidoro

2015-07-01

We performed a laboratory study into the effect of cypermethrin insecticide applied to different concentrations on biological properties in two soils [Typic Xerofluvent (soil A) and Xerollic Calciorthid (soil B)]. Two kg of each soil were polluted with cypermethrin at a rate of 60, 300, 600, and 1,200 g ha(-1) (C1, C2, C3, and C4 treatments). A nonpolluted soil was used as a control (C0 treatment). For all treatments and each experimental soil, soil dehydrogenase, urease, β-glucosidase, phosphatase, and arylsulphatase activities and soil microbial community were analysed by phospholipid fatty acids, which were measured at six incubation times (3, 7, 15, 30, 60, and 90 days). The behavior of the enzymatic activities and microbial population were dependent on the dose of insecticide applied to the soil. Compared with the C0 treatment, in soil A, the maximum inhibition of the enzymatic activities was at 15, 30, 45, and 90 days for the C1, C2, C3, and C4 treatments, respectively. However, in soil B, the maximum inhibition occurred at 7, 15, 30, and 45 days for the C1, C2, C3, and C4 treatments, respectively. These results suggest that the cypermethrin insecticide caused a negative effect on soil enzymatic activities and microbial diversity. This negative impact was greater when a greater dose of insecticide was used; this impact was also greater in soil with lower organic matter content. For both soils, and from these respective days onward, the enzymatic activities and microbial populations progressively increased by the end of the experimental period. This is possibly due to the fact that the insecticide or its breakdown products and killed microbial cells, subsequently killed by the insecticide, are being used as a source of energy or as a carbon source for the surviving microorganisms for cell proliferation.

Relationship between biodiversity and agricultural production

OpenAIRE

Brunetti, Ilaria; Tidball, Mabel; Couvet, Denis

2018-01-01

Agriculture is one of the main causes of biodiversity loss. In this work we model the interdependent relationship between biodiversity and agriculture on a farmed land, supposing that, while agriculture has a negative impact on biodiversity, the latter can increase agricultural production. Farmers act as myopic agents, who maximize their instantaneous profit without considering the negative effects of their practice on the evolution of biodiversity. We find that a tax on inputs can have a pos...

Challenges of Biodiversity Education: A Review of Education Strategies for Biodiversity Education

Science.gov (United States)

Navarro-Perez, Moramay; Tidball, Keith G.

2012-01-01

Biodiversity conservation has increasingly gained recognition in national and international agendas. The Convention on Biological Diversity (CBD) has positioned biodiversity as a key asset to be protected to ensure our well-being and that of future generations. Nearly 20 years after its inception, results are not as expected, as shown in the…

Economic growth, biodiversity loss and conservation effort.

Science.gov (United States)

Dietz, Simon; Adger, W Neil

2003-05-01

This paper investigates the relationship between economic growth, biodiversity loss and efforts to conserve biodiversity using a combination of panel and cross section data. If economic growth is a cause of biodiversity loss through habitat transformation and other means, then we would expect an inverse relationship. But if higher levels of income are associated with increasing real demand for biodiversity conservation, then investment to protect remaining diversity should grow and the rate of biodiversity loss should slow with growth. Initially, economic growth and biodiversity loss are examined within the framework of the environmental Kuznets hypothesis. Biodiversity is represented by predicted species richness, generated for tropical terrestrial biodiversity using a species-area relationship. The environmental Kuznets hypothesis is investigated with reference to comparison of fixed and random effects models to allow the relationship to vary for each country. It is concluded that an environmental Kuznets curve between income and rates of loss of habitat and species does not exist in this case. The role of conservation effort in addressing environmental problems is examined through state protection of land and the regulation of trade in endangered species, two important means of biodiversity conservation. This analysis shows that the extent of government environmental policy increases with economic development. We argue that, although the data are problematic, the implications of these models is that conservation effort can only ever result in a partial deceleration of biodiversity decline partly because protected areas serve multiple functions and are not necessarily designated to protect biodiversity. Nevertheless institutional and policy response components of the income biodiversity relationship are important but are not well captured through cross-country regression analysis.

What is marine biodiversity? Towards common concepts and their implications for assessing biodiversity status

Directory of Open Access Journals (Sweden)

Sabine Cochrane

2016-12-01

Full Text Available ‘Biodiversity’ is one of the most common keywords used in environmental sciences, spanning from research to management, nature conservation and consultancy. Despite this, our understanding of the underlying concepts varies greatly, between and within disciplines as well as among the scientists themselves. Biodiversity can refer to descriptions or assessments of the status and condition of all or selected groups of organisms, from the genetic variability, to the species, populations, communities, and ecosystems. However, a concept of biodiversity also must encompass understanding the interactions and functions on all levels from individuals up to the whole ecosystem, including changes related to natural and anthropogenic environmental pressures. While biodiversity as such is an abstract and relative concept rooted in the spatial domain, it is central to most international, European and national governance initiatives aimed at protecting the marine environment. These rely on status assessments of biodiversity which typically require numerical targets and specific reference values, to allow comparison in space and/or time, often in association with some external structuring factors such as physical and biogeochemical conditions. Given that our ability to apply and interpret such assessments requires a solid conceptual understanding of marine biodiversity, here we define this and show how the abstract concept can and needs to be interpreted and subsequently applied in biodiversity assessments.

Indices for assessing coral reef fish biodiversity: the need for a change in habits.

Science.gov (United States)

Loiseau, Nicolas; Gaertner, Jean-Claude

2015-09-01

We present the first representative and quantified overview of the indices used worldwide for assessing the biodiversity of coral reef fishes. On this basis, we discuss the suitability and drawbacks of the indices most widely used in the assessment of coral fish biodiversity. An extensive and systematic survey of the literature focused on coral reef fish biodiversity was conducted from 1990 up to the present. We found that the multicomponent aspect of biodiversity, which is considered as a key feature of biodiversity for numerous terrestrial and marine ecosystems, has been poorly taken into account in coral reef fish studies. Species richness is still strongly dominant while other diversity components, such as functional diversity, are underestimated even when functional information is available. We also demonstrate that the reason for choosing particular indices is often unclear, mainly based on empirical rationales and/or the reproduction of widespread habits, but generally with no clear relevance with regard to the aims of the studies. As a result, the most widely used indices (species richness, Shannon, etc.) would appear to be poorly suited to meeting the main challenges facing the monitoring of coral reef fish biodiversity in the future. Our results clearly show that coral reef scientists should rather take advantage of the multicomponent aspect of biodiversity. To facilitate this approach, we propose general guidelines to serve as a basis for the selection of indices that provide complementary and relevant information for monitoring the response of coral reef fish biodiversity in the face of structuring factors (natural or anthropic). The aim of these guidelines was to achieve a better match between the properties of the selected indices and the context of each study (e.g. expected effect of the main structuring factors, nature of data available).

Biodiversity as a solution to mitigate climate change impacts on the functioning of forest ecosystems.

Science.gov (United States)

Hisano, Masumi; Searle, Eric B; Chen, Han Y H

2018-02-01

Forest ecosystems are critical to mitigating greenhouse gas emissions through carbon sequestration. However, climate change has affected forest ecosystem functioning in both negative and positive ways, and has led to shifts in species/functional diversity and losses in plant species diversity which may impair the positive effects of diversity on ecosystem functioning. Biodiversity may mitigate climate change impacts on (I) biodiversity itself, as more-diverse systems could be more resilient to climate change impacts, and (II) ecosystem functioning through the positive relationship between diversity and ecosystem functioning. By surveying the literature, we examined how climate change has affected forest ecosystem functioning and plant diversity. Based on the biodiversity effects on ecosystem functioning (B→EF), we specifically address the potential for biodiversity to mitigate climate change impacts on forest ecosystem functioning. For this purpose, we formulate a concept whereby biodiversity may reduce the negative impacts or enhance the positive impacts of climate change on ecosystem functioning. Further B→EF studies on climate change in natural forests are encouraged to elucidate how biodiversity might influence ecosystem functioning. This may be achieved through the detailed scrutiny of large spatial/long temporal scale data sets, such as long-term forest inventories. Forest management strategies based on B→EF have strong potential for augmenting the effectiveness of the roles of forests in the mitigation of climate change impacts on ecosystem functioning. © 2017 Cambridge Philosophical Society.

European Biodiversity Observation Network – EBONE

NARCIS (Netherlands)

Halada, L.; Jongman, R.H.G.; Gerard, F.; Whittaker, L.; Bunce, R.G.H.; Bauch, B.; Schmeller, D.S.

2009-01-01

EBONE (European Biodiversity Observation Network) is a project developing a system of biodiversity observation at regional, national and European levels as a contribution to European reporting on biodiversity. The project focuses on GEO (Group of Earth Observations) task BI 07-01 to unify many of

In Defence of Biodiversity

NARCIS (Netherlands)

Archer, Alfred; Burch Brown, Joanna

2017-01-01

The concept of biodiversity has played a central role within conservation biology over the last thirty years. Precisely how it should be understood, however, is a matter of ongoing debate. In this paper we defend what we call a classic multidimensional conception of biodiversity. We begin by

Biodiversity as a multidimensional construct: a review, framework and case study of herbivory's impact on plant biodiversity

DEFF Research Database (Denmark)

Naeem, S.; Prager, Case; Weeks, Brian

2016-01-01

Biodiversity is inherently multidimensional, encompassing taxonomic, functional, phylogenetic, genetic, landscape and many other elements of variability of life on the Earth. However, this fundamental principle of multidimensionality is rarely applied in research aimed at understanding biodiversity...... on understory plant cover at Black Rock Forest, New York. Using three biodiversity dimensions (taxonomic, functional and phylogenetic diversity) to explore our framework, we found that herbivory alters biodiversity's multidimensional influence on plant cover; an effect not observable through a unidimensional...

Inter-American Biodiversity Information Network (IABIN)

Science.gov (United States)

site. IABIN Inter-American Biodiversity Information Network (IABIN) OAS » SEDI » DSD » IABIN IABIN GEF Logo inbio natserve usgs polpar wcm The Inter-American Biodiversity Information Network (IABIN , and use of biodiversity information relevant to policy and decision-making on natural resources

Biodiversity as a multidimensional construct: a review, framework and case study of herbivory's impact on plant biodiversity

Science.gov (United States)

Naeem, S.; Prager, Case; Weeks, Brian; Varga, Alex; Flynn, Dan F. B.; Griffin, Kevin; Muscarella, Robert; Palmer, Matthew; Wood, Stephen; Schuster, William

2016-01-01

Biodiversity is inherently multidimensional, encompassing taxonomic, functional, phylogenetic, genetic, landscape and many other elements of variability of life on the Earth. However, this fundamental principle of multidimensionality is rarely applied in research aimed at understanding biodiversity's value to ecosystem functions and the services they provide. This oversight means that our current understanding of the ecological and environmental consequences of biodiversity loss is limited primarily to what unidimensional studies have revealed. To address this issue, we review the literature, develop a conceptual framework for multidimensional biodiversity research based on this review and provide a case study to explore the framework. Our case study specifically examines how herbivory by whitetail deer (Odocoileus virginianus) alters the multidimensional influence of biodiversity on understory plant cover at Black Rock Forest, New York. Using three biodiversity dimensions (taxonomic, functional and phylogenetic diversity) to explore our framework, we found that herbivory alters biodiversity's multidimensional influence on plant cover; an effect not observable through a unidimensional approach. Although our review, framework and case study illustrate the advantages of multidimensional over unidimensional approaches, they also illustrate the statistical and empirical challenges such work entails. Meeting these challenges, however, where data and resources permit, will be important if we are to better understand and manage the consequences we face as biodiversity continues to decline in the foreseeable future. PMID:27928041

Biodiversity as a multidimensional construct: a review, framework and case study of herbivory's impact on plant biodiversity.

Science.gov (United States)

Naeem, S; Prager, Case; Weeks, Brian; Varga, Alex; Flynn, Dan F B; Griffin, Kevin; Muscarella, Robert; Palmer, Matthew; Wood, Stephen; Schuster, William

2016-12-14

Biodiversity is inherently multidimensional, encompassing taxonomic, functional, phylogenetic, genetic, landscape and many other elements of variability of life on the Earth. However, this fundamental principle of multidimensionality is rarely applied in research aimed at understanding biodiversity's value to ecosystem functions and the services they provide. This oversight means that our current understanding of the ecological and environmental consequences of biodiversity loss is limited primarily to what unidimensional studies have revealed. To address this issue, we review the literature, develop a conceptual framework for multidimensional biodiversity research based on this review and provide a case study to explore the framework. Our case study specifically examines how herbivory by whitetail deer (Odocoileus virginianus) alters the multidimensional influence of biodiversity on understory plant cover at Black Rock Forest, New York. Using three biodiversity dimensions (taxonomic, functional and phylogenetic diversity) to explore our framework, we found that herbivory alters biodiversity's multidimensional influence on plant cover; an effect not observable through a unidimensional approach. Although our review, framework and case study illustrate the advantages of multidimensional over unidimensional approaches, they also illustrate the statistical and empirical challenges such work entails. Meeting these challenges, however, where data and resources permit, will be important if we are to better understand and manage the consequences we face as biodiversity continues to decline in the foreseeable future. © 2016 The Authors.

European mountain biodiversity

Directory of Open Access Journals (Sweden)

Nagy, Jennifer

1998-12-01

Full Text Available This paper, originally prepared as a discussion document for the ESF Exploratory Workshop «Trends in European Mountain Biodiversity - Research Planning Workshop», provides an overview of current mountain biodiversity research in Europe. It discusses (a biogeographical trends, (b the general properties of biodiversity, (c environmental factors and the regulation of biodiversity with respect to ecosystem function, (d the results of research on mountain freshwater ecosystems, and (e climate change and air pollution dominated environmental interactions.- The section on biogeographical trends highlights the importance of altitude and latitude on biodiversity. The implications of the existence of different scales over the different levels of biodiversity and across organism groups are emphasised as an inherent complex property of biodiversity. The discussion on ecosystem function and the regulation of biodiversity covers the role of environmental factors, productivity, perturbation, species migration and dispersal, and species interactions in the maintenance of biodiversity. Regional and long-term temporal patterns are also discussed. A section on the relatively overlooked topic of mountain freshwater ecosystems is presented before the final topic on the implications of recent climate change and air pollution for mountain biodiversity.

[fr] Ce document a été préparé à l'origine comme une base de discussion pour «ESF Exploratory Workshop» intitulé «Trends in European Mountain Biodiversity - Research Planning Workshop»; il apporte une vue d'ensemble sur les recherches actuelles portant sur la biodiversité des montagnes en Europe. On y discute les (a traits biogéographiques, (b les caractéristiques générales- de la biodiversité, (c les facteurs environnementaux et la régulation de la biodiversité par rapport à la fonction des écosystèmes, (d les résultats des études sur les écosystèmes aquatiques des montagnes et (e les

Can Environmental Education Actions Change Public Attitudes? An Example Using the Pond Habitat and Associated Biodiversity.

Science.gov (United States)

Sousa, Eunice; Quintino, Victor; Palhas, Jael; Rodrigues, Ana Maria; Teixeira, José

2016-01-01

Ponds provide vital ecological services. They are biodiversity hotspots and important breading sites for rare and endangered species, including amphibians and dragonflies. Nevertheless, their number is decreasing due to habitat degradation caused by human activities. The "Ponds with Life" environmental education project was developed to raise public awareness and engagement in the study of ponds by promoting the direct contact between the public and nature, researchers and pedagogical hands-on exploration activities. A pre-post- project survey was set-up to assess the effects of the project on the environmental consciousness, knowledge and attitude changes towards ponds and the associated biodiversity of school students aged 15 to 18. The survey questions were based on Likert scales and their pre-post project comparisons used an innovative multivariate hypothesis testing approach. The results showed that the project improved the students' knowledge and attitudes towards ponds and associated biodiversity, especially the amphibians. Ponds can be found or constructed in urban areas and despite small sized, they proved to be interesting model habitats and living laboratories to foster environmental education, by encompassing a high number of species and a fast ecological succession.

Arctic Terrestrial Biodiversity Monitoring Plan

DEFF Research Database (Denmark)

Christensen, Tom; Payne, J.; Doyle, M.

The Conservation of Arctic Flora and Fauna (CAFF), the biodiversity working group of the Arctic Council, established the Circumpolar Biodiversity Monitoring Program (CBMP) to address the need for coordinated and standardized monitoring of Arctic environments. The CBMP includes an international...... on developing and implementing long-term plans for monitoring the integrity of Arctic biomes: terrestrial, marine, freshwater, and coastal (under development) environments. The CBMP Terrestrial Expert Monitoring Group (CBMP-TEMG) has developed the Arctic Terrestrial Biodiversity Monitoring Plan (CBMP......-Terrestrial Plan/the Plan) as the framework for coordinated, long-term Arctic terrestrial biodiversity monitoring. The goal of the CBMP-Terrestrial Plan is to improve the collective ability of Arctic traditional knowledge (TK) holders, northern communities, and scientists to detect, understand and report on long...

Biodiversity

CSIR Research Space (South Africa)

Scholes, RJ

2006-01-01

Full Text Available Biodiversity offers multiple opportunities for development and improving human well-being. It is the basis for essential environmental services upon which life on Earth depends. Thus, its conservation and sustainable use are of critical importance...

Measuring Biodiversity in Forest Communities – A Role of Biodiversity Indices

Directory of Open Access Journals (Sweden)

Lakićević Milena

2018-03-01

Full Text Available Biodiversity refers to genetic, species and ecosystems varieties within an area. Two main characteristics that should be investigated when considering biodiversity are richness and evenness. Richness is related to the number of different species in the analyzed area, while evenness corresponds to the homogeneity of the abundance of species. For quantifying these features, many indices have been defined, and this paper offers an overview of the most commonly used biodiversity indices, such as Shannon, Simpson, Margalef and Berger-Parker. The paper explains the process of calculating these indices on the case study example of four forest communities and discusses the results obtained. The Jaccard index analysis is used to discover a similarity between the analyzed forest communities. Results from this part of the research are visualized by creating appropriate dendrograms for making the interpretation easier. Calculating and analyzing these indices is useful not only for forest ecosystems, but for the other types of ecosystems as well, including agro-ecosystems. Biodiversity indices can be obtained in thespecialized software, for instance in EstimateS (Statistical Estimation of Species Richness and Shared Species from Samples, or by programming in the statistical package R, as it was done in this research.

Copahue Geothermal System: A Volcanic Environment with Rich Extreme Prokaryotic Biodiversity

Directory of Open Access Journals (Sweden)

María Sofía Urbieta

2015-07-01

Full Text Available The Copahue geothermal system is a natural extreme environment located at the northern end of the Cordillera de los Andes in Neuquén province in Argentina. The geochemistry and consequently the biodiversity of the area are dominated by the activity of the Copahue volcano. The main characteristic of Copahue is the extreme acidity of its aquatic environments; ponds and hot springs of moderate and high temperature as well as Río Agrio. In spite of being an apparently hostile location, the prokaryotic biodiversity detected by molecular ecology techniques as well as cultivation shows a rich and diverse environment dominated by acidophilic, sulphur oxidising bacteria or archaea, depending on the conditions of the particular niche studied. In microbial biofilms, found in the borders of the ponds where thermal activity is less intense, the species found are completely different, with a high presence of cyanobacteria and other photosynthetic species. Our results, collected during more than 10 years of work in Copahue, have enabled us to outline geomicrobiological models for the different environments found in the ponds and Río Agrio. Besides, Copahue seems to be the habitat of novel, not yet characterised autochthonous species, especially in the domain Archaea.

Evolution, plant breeding and biodiversity

Directory of Open Access Journals (Sweden)

Salvatore Ceccarelli

2011-11-01

Full Text Available This paper deals with changes in biodiversity during the course of evolution, plant domestication and plant breeding. It shows than man has had a strong influence on the progressive decrease of biodiversity, unconscious at first and deliberate in modern times. The decrease in biodiversity in the agricultures of the North causes a severe threat to food security and is in contrasts with the conservation of biodiversity which is part of the culture of several populations in the South. The concluding section of the paper shows that man could have guided evolution in a different way and shows an example of participatory plant breeding, a type of breeding which is done in collaboration with farmers and is based on selection for specific adaptation. Even though participatory plant breeding has been practiced for only about 20 years and by relatively few groups, the effects on both biodiversity and crop production are impressive. Eventually the paper shows how participatory plant breeding can be developed into ‘evolutionary plant breeding’ to cope in a dynamic way with climate changes.

International Center for Himalayan Biodiversity (ICHB): Conserving Himalayan Biodiversity--A Global Responsibility

Science.gov (United States)

Ram Bhandari

2006-01-01

Biodiversity is a global endowment of nature. Conservation of biodiversity includes all species of plants, animals and other organisms, the range of genetic stocks within each species, and ecosystem diversity. Food, many types of medicine and industrial products are provided by the biological resources that are the basis of life on Earth. The value of the Earth’s...

Balancing Urban Biodiversity Needs and Resident Preferences for Vacant Lot Management

Directory of Open Access Journals (Sweden)

Christine C. Rega-Brodsky

2018-05-01

Full Text Available Urban vacant lots are often a contentious feature in cities, seen as overgrown, messy eyesores that plague neighborhoods. We propose a shift in this perception to locations of urban potential, because vacant lots may serve as informal greenspaces that maximize urban biodiversity while satisfying residents’ preferences for their design and use. Our goal was to assess what kind of vacant lots are ecologically valuable by assessing their biotic contents and residents’ preferences within a variety of settings. We surveyed 150 vacant lots throughout Baltimore, Maryland for their plant and bird communities, classified the lot’s setting within the urban matrix, and surveyed residents. Remnant vacant lots had greater vegetative structure and bird species richness as compared to other lot origins, while vacant lot settings had limited effects on their contents. Residents preferred well-maintained lots with more trees and less artificial cover, support of which may increase local biodiversity in vacant lots. Collectively, we propose that vacant lots with a mixture of remnant and planted vegetation can act as sustainable urban greenspaces with the potential for some locations to enhance urban tree cover and bird habitat, while balancing the needs and preferences of city residents.

The origins of tropical marine biodiversity.

Science.gov (United States)

Bowen, Brian W; Rocha, Luiz A; Toonen, Robert J; Karl, Stephen A

2013-06-01

Recent phylogeographic studies have overturned three paradigms for the origins of marine biodiversity. (i) Physical (allopatric) isolation is not the sole avenue for marine speciation: many species diverge along ecological boundaries. (ii) Peripheral habitats such as oceanic archipelagos are not evolutionary graveyards: these regions can export biodiversity. (iii) Speciation in marine and terrestrial ecosystems follow similar processes but are not the same: opportunities for allopatric isolation are fewer in the oceans, leaving greater opportunity for speciation along ecological boundaries. Biodiversity hotspots such as the Caribbean Sea and the Indo-Pacific Coral Triangle produce and export species, but can also accumulate biodiversity produced in peripheral habitats. Both hotspots and peripheral ecosystems benefit from this exchange in a process dubbed biodiversity feedback. Copyright © 2013 Elsevier Ltd. All rights reserved.

Accounting for biodiversity in the dairy industry.

Science.gov (United States)

Sizemore, Grant C

2015-05-15

Biodiversity is an essential part of properly functioning ecosystems, yet the loss of biodiversity currently occurs at rates unparalleled in the modern era. One of the major causes of this phenomenon is habitat loss and modification as a result of intensified agricultural practices. This paper provides a starting point for considering biodiversity within dairy production, and, although focusing primarily on the United States, findings are applicable broadly. Biodiversity definitions and assessments (e.g., indicators, tools) are proposed and reviewed. Although no single indicator or tool currently meets all the needs of comprehensive assessment, many sustainable practices are readily adoptable as ways to conserve and promote biodiversity. These practices, as well as potential funding opportunities are identified. Given the state of uncertainty in addressing the complex nature of biodiversity assessments, the adoption of generally sustainable environmental practices may be the best currently available option for protecting biodiversity on dairy lands. Copyright © 2015 Elsevier Ltd. All rights reserved.

Toward an integrated understanding of perceived biodiversity values and environmental conditions in a national park

Science.gov (United States)

van Riper, Carena J.; Kyle, Gerard T.; Sherrouse, Ben C.; Bagstad, Kenneth J.; Sutton, Stephen G.

2016-01-01

In spatial planning and management of protected areas, increased priority is being given to research that integrates social and ecological data. However, public viewpoints of the benefits provided by ecosystems are not easily quantified and often implicitly folded into natural resource management decisions. Drawing on a spatially explicit participatory mapping exercise and a Social Values for Ecosystem Services (SolVES) analysis tool, the present study empirically examined and integrated social values for ecosystem services and environmental conditions within Channel Islands National Park, California. Specifically, a social value indicator of perceived biodiversity was examined using on-site survey data collected from a sample of people who visited the park. This information was modeled alongside eight environmental conditions including faunal species richness for six taxa, vegetation density, categories of marine and terrestrial land cover, and distance to features relevant for decision-makers. Results showed that biodiversity value points assigned to places by the pooled sample of respondents were widely and unevenly mapped, which reflected the belief that biodiversity was embodied to varying degrees by multiple locations in the park. Models generated for two survey subgroups defined by their self-reported knowledge of the Channels Islands revealed distinct spatial patterns of these perceived values. Specifically, respondents with high knowledge valued large spaces that were publicly inaccessible and unlikely to contain on-ground biodiversity, whereas respondents with low knowledge valued places that were experienced first-hand. Accessibility and infrastructure were also important considerations for anticipating how and where people valued the protected land and seascapes of Channel Islands National Park.

Biodiversity in the City: Fundamental Questions for Understanding the Ecology of Urban Green Spaces for Biodiversity Conservation

Science.gov (United States)

Christopher A. Lepczyk; Myla F. J. Aronson; Karl L. Evans; Mark A. Goddard; Susannah B. Lerman; J. Scott MacIvor

2017-01-01

As urban areas expand, understanding how ecological processes function in cities has become increasingly important for conserving biodiversity. Urban green spaces are critical habitats to support biodiversity, but we still have a limited understanding of their ecology and how they function to conserve biodiversity at local and landscape scales across multiple taxa....

Urban lifestyle and urban biodiversity

DEFF Research Database (Denmark)

Petersen, L. K.; Lyytimäki, J.; Normander, B.

2007-01-01

This report is concerned with the relations between lifestyles of urban populations on one hand and protection of biodiversity in urban areas on the other. Urban areas are of importance for the general protection of biodiversity. In the surroundings of cities and within urban sprawls there can...... biodiversity, recreational, educational and other needs. However, uncovered and unsealed space is constantly under pressure for building and infrastructure development in the urban landscape, and the design and usages of urban green structure is a matter of differing interests and expectations. Integrating...... the green needs of urban lifestyle in the planning process does not come by itself. Nor does finding the synergies between urban lifestyle and urban biodiversity. Careful planning including stakeholder involvement is required. In this process various mapping techniques and use of indicators can be most...

Warfare in biodiversity hotspots.

Science.gov (United States)

Hanson, Thor; Brooks, Thomas M; Da Fonseca, Gustavo A B; Hoffmann, Michael; Lamoreux, John F; Machlis, Gary; Mittermeier, Cristina G; Mittermeier, Russell A; Pilgrim, John D

2009-06-01

Conservation efforts are only as sustainable as the social and political context within which they take place. The weakening or collapse of sociopolitical frameworks during wartime can lead to habitat destruction and the erosion of conservation policies, but in some cases, may also confer ecological benefits through altered settlement patterns and reduced resource exploitation. Over 90% of the major armed conflicts between 1950 and 2000 occurred within countries containing biodiversity hotspots, and more than 80% took place directly within hotspot areas. Less than one-third of the 34 recognized hotspots escaped significant conflict during this period, and most suffered repeated episodes of violence. This pattern was remarkably consistent over these 5 decades. Evidence from the war-torn Eastern Afromontane hotspot suggests that biodiversity conservation is improved when international nongovernmental organizations support local protected area staff and remain engaged throughout the conflict. With biodiversity hotspots concentrated in politically volatile regions, the conservation community must maintain continuous involvement during periods of war, and biodiversity conservation should be incorporated into military, reconstruction, and humanitarian programs in the world's conflict zones. ©2009 Society for Conservation Biology.

Core issues in the economics of biodiversity conservation.

Science.gov (United States)

Tisdell, Clement A

2011-02-01

Economic evaluations are essential for assessing the desirability of biodiversity conservation. This article highlights significant advances in theories and methods of economic evaluation and their relevance and limitations as a guide to biodiversity conservation; considers the implications of the phylogenetic similarity principle for the survival of species; discusses consequences of the Noah's Ark problem for selecting features of biodiversity to be saved; analyzes the extent to which the precautionary principle can be rationally used to support the conservation of biodiversity; explores the impact of market extensions, market and other institutional failures, and globalization on biodiversity loss; examines the relationship between the rate of interest and biodiversity depletion; and investigates the implications of intergenerational equity for biodiversity conservation. The consequences of changes in biodiversity for sustainable development are given particular attention. © 2011 New York Academy of Sciences.

Biodiversity informatics: challenges and opportunities for applying biodiversity information to management and conservation

Science.gov (United States)

James S. Kagan

2006-01-01

Researchers, land managers, and the public currently often are unable to obtain useful biodiversity information because the subject represents such a large component of biology and ecology, and systems to compile and organize this information do not exist. Information on vascular plant taxonomy, as addressed by the Global Biodiversity Information Facility and key...

Whole-community facilitation regulates biodiversity on Patagonian rocky shores.

Directory of Open Access Journals (Sweden)

Brian R Silliman

Full Text Available Understanding the factors that generate and maintain biodiversity is a central goal in ecology. While positive species interactions (i.e., facilitation have historically been underemphasized in ecological research, they are increasingly recognized as playing important roles in the evolution and maintenance of biodiversity. Dominant habitat-forming species (foundation species buffer environmental conditions and can therefore facilitate myriad associated species. Theory predicts that facilitation will be the dominant community-structuring force under harsh environmental conditions, where organisms depend on shelter for survival and predation is diminished. Wind-swept, arid Patagonian rocky shores are one of the most desiccating intertidal rocky shores ever studied, providing an opportunity to test this theory and elucidate the context-dependency of facilitation.Surveys across 2100 km of southern Argentinean coastline and experimental manipulations both supported theoretical predictions, with 43 out of 46 species in the animal assemblage obligated to living within the matrices of mussels for protection from potentially lethal desiccation stress and predators having no detectable impact on diversity.These results provide the first experimental support of long-standing theoretical predictions and reveal that in extreme climates, maintenance of whole-community diversity can be maintained by positive interactions that ameliorate physical stress. These findings have important conservation implications and emphasize that preserving foundation species should be a priority in remediating the biodiversity consequences of global climate change.

Vertically distinct microbial communities in the Mariana and Kermadec trenches

Science.gov (United States)

Donaldson, Sierra; Osuntokun, Oladayo; Xia, Qing; Nelson, Alex; Blanton, Jessica; Allen, Eric E.; Church, Matthew J.; Bartlett, Douglas H.

2018-01-01

Hadal trenches, oceanic locations deeper than 6,000 m, are thought to have distinct microbial communities compared to those at shallower depths due to high hydrostatic pressures, topographical funneling of organic matter, and biogeographical isolation. Here we evaluate the hypothesis that hadal trenches contain unique microbial biodiversity through analyses of the communities present in the bottom waters of the Kermadec and Mariana trenches. Estimates of microbial protein production indicate active populations under in situ hydrostatic pressures and increasing adaptation to pressure with depth. Depth, trench of collection, and size fraction are important drivers of microbial community structure. Many putative hadal bathytypes, such as members related to the Marinimicrobia, Rhodobacteraceae, Rhodospirilliceae, and Aquibacter, are similar to members identified in other trenches. Most of the differences between the two trench microbiomes consists of taxa belonging to the Gammaproteobacteria whose distributions extend throughout the water column. Growth and survival estimates of representative isolates of these taxa under deep-sea conditions suggest that some members may descend from shallower depths and exist as a potentially inactive fraction of the hadal zone. We conclude that the distinct pelagic communities residing in these two trenches, and perhaps by extension other trenches, reflect both cosmopolitan hadal bathytypes and ubiquitous genera found throughout the water column. PMID:29621268

Exploring the under-investigated "microbial dark matter" of drinking water treatment plants.

Science.gov (United States)

Bruno, Antonia; Sandionigi, Anna; Rizzi, Ermanno; Bernasconi, Marzia; Vicario, Saverio; Galimberti, Andrea; Cocuzza, Clementina; Labra, Massimo; Casiraghi, Maurizio

2017-03-14

Scientists recently reported the unexpected detection of unknown or poorly studied bacterial diversity in groundwater. The ability to uncover this neglected biodiversity mainly derives from technical improvements, and the term "microbial dark matter" was used to group taxa poorly investigated and not necessarily monophyletic. We focused on such under-investigated microbial dark matter of drinking water treatment plant from groundwater, across carbon filters, to post-chlorination. We tackled this topic using an integrated approach where the efficacy of stringent water filtration (10000 MWCO) in recovering even the smallest environmental microorganisms was coupled with high-throughput DNA sequencing to depict an informative spectrum of the neglected microbial diversity. Our results revealed that the composition of bacterial communities varies across the plant system: Parcubacteria (OD1) superphylum is found mainly in treated water, while groundwater has the highest heterogeneity, encompassing non-OD1 candidate phyla (Microgenomates, Saccharibacteria, Dependentiae, OP3, OP1, BRC1, WS3). Carbon filters probably act as substrate for microorganism growth and contribute to seeding water downstream, since chlorination does not modify the incoming bacterial community. New questions arise about the role of microbial dark matter in drinking water. Indeed, our results suggest that these bacteria might play a central role in the microbial dynamics of drinking water.

The effects of energy grass plantations on biodiversity

Energy Technology Data Exchange (ETDEWEB)

Semere, T; Slater, F

2005-07-01

The ecological impact on local wildlife of biomass plantations of three different species of grasses has been monitored in the years 2002 to 2004 inclusive at farms in Herefordshire UK. Two of the grasses were not native to Britain. Wildlife monitored included ground flora, beetles, insects, birds, small mammals, butterflies, bees and hoverflies. The results provide a baseline of biodiversity data from biomass farms in England, although due to poor crop growth, the data from the switch-grass plantation was incomplete. The surveys were carried out by Cardiff University supported financially by the DTI.

The effects of energy grass plantations on biodiversity

International Nuclear Information System (INIS)

Semere, T.; Slater, F.

2005-01-01

The ecological impact on local wildlife of biomass plantations of three different species of grasses has been monitored in the years 2002 to 2004 inclusive at farms in Herefordshire UK. Two of the grasses were not native to Britain. Wildlife monitored included ground flora, beetles, insects, birds, small mammals, butterflies, bees and hoverflies. The results provide a baseline of biodiversity data from biomass farms in England, although due to poor crop growth, the data from the switch-grass plantation was incomplete. The surveys were carried out by Cardiff University supported financially by the DTI

Semantics in support of biodiversity knowledge discovery: an introduction to the biological collections ontology and related ontologies.

Science.gov (United States)

Walls, Ramona L; Deck, John; Guralnick, Robert; Baskauf, Steve; Beaman, Reed; Blum, Stanley; Bowers, Shawn; Buttigieg, Pier Luigi; Davies, Neil; Endresen, Dag; Gandolfo, Maria Alejandra; Hanner, Robert; Janning, Alyssa; Krishtalka, Leonard; Matsunaga, Andréa; Midford, Peter; Morrison, Norman; Ó Tuama, Éamonn; Schildhauer, Mark; Smith, Barry; Stucky, Brian J; Thomer, Andrea; Wieczorek, John; Whitacre, Jamie; Wooley, John

2014-01-01

The study of biodiversity spans many disciplines and includes data pertaining to species distributions and abundances, genetic sequences, trait measurements, and ecological niches, complemented by information on collection and measurement protocols. A review of the current landscape of metadata standards and ontologies in biodiversity science suggests that existing standards such as the Darwin Core terminology are inadequate for describing biodiversity data in a semantically meaningful and computationally useful way. Existing ontologies, such as the Gene Ontology and others in the Open Biological and Biomedical Ontologies (OBO) Foundry library, provide a semantic structure but lack many of the necessary terms to describe biodiversity data in all its dimensions. In this paper, we describe the motivation for and ongoing development of a new Biological Collections Ontology, the Environment Ontology, and the Population and Community Ontology. These ontologies share the aim of improving data aggregation and integration across the biodiversity domain and can be used to describe physical samples and sampling processes (for example, collection, extraction, and preservation techniques), as well as biodiversity observations that involve no physical sampling. Together they encompass studies of: 1) individual organisms, including voucher specimens from ecological studies and museum specimens, 2) bulk or environmental samples (e.g., gut contents, soil, water) that include DNA, other molecules, and potentially many organisms, especially microbes, and 3) survey-based ecological observations. We discuss how these ontologies can be applied to biodiversity use cases that span genetic, organismal, and ecosystem levels of organization. We argue that if adopted as a standard and rigorously applied and enriched by the biodiversity community, these ontologies would significantly reduce barriers to data discovery, integration, and exchange among biodiversity resources and researchers.

Semantics in Support of Biodiversity Knowledge Discovery: An Introduction to the Biological Collections Ontology and Related Ontologies

Science.gov (United States)

Baskauf, Steve; Blum, Stanley; Bowers, Shawn; Davies, Neil; Endresen, Dag; Gandolfo, Maria Alejandra; Hanner, Robert; Janning, Alyssa; Krishtalka, Leonard; Matsunaga, Andréa; Midford, Peter; Tuama, Éamonn Ó.; Schildhauer, Mark; Smith, Barry; Stucky, Brian J.; Thomer, Andrea; Wieczorek, John; Whitacre, Jamie; Wooley, John

2014-01-01

The study of biodiversity spans many disciplines and includes data pertaining to species distributions and abundances, genetic sequences, trait measurements, and ecological niches, complemented by information on collection and measurement protocols. A review of the current landscape of metadata standards and ontologies in biodiversity science suggests that existing standards such as the Darwin Core terminology are inadequate for describing biodiversity data in a semantically meaningful and computationally useful way. Existing ontologies, such as the Gene Ontology and others in the Open Biological and Biomedical Ontologies (OBO) Foundry library, provide a semantic structure but lack many of the necessary terms to describe biodiversity data in all its dimensions. In this paper, we describe the motivation for and ongoing development of a new Biological Collections Ontology, the Environment Ontology, and the Population and Community Ontology. These ontologies share the aim of improving data aggregation and integration across the biodiversity domain and can be used to describe physical samples and sampling processes (for example, collection, extraction, and preservation techniques), as well as biodiversity observations that involve no physical sampling. Together they encompass studies of: 1) individual organisms, including voucher specimens from ecological studies and museum specimens, 2) bulk or environmental samples (e.g., gut contents, soil, water) that include DNA, other molecules, and potentially many organisms, especially microbes, and 3) survey-based ecological observations. We discuss how these ontologies can be applied to biodiversity use cases that span genetic, organismal, and ecosystem levels of organization. We argue that if adopted as a standard and rigorously applied and enriched by the biodiversity community, these ontologies would significantly reduce barriers to data discovery, integration, and exchange among biodiversity resources and researchers

Bridging the gap between biodiversity data and policy reporting needs: An essential biodiversity variables perspective

CSIR Research Space (South Africa)

Geijzendorffer, IR

2016-01-01

Full Text Available come from less biodiverse areas such as North America and 92 Europe rather than biodiversity-rich areas such as some parts of the tropics (Collen et al. 2008; Mora et 93 al. 2008; Pereira et al. 2012) and developing countries (Butchart et al. 2010... provision, EBVs 349 for other specific ecosystem functions were missing (e.g., pollination or soil decomposition rates). 350 351 This analysis also highlighted that reporting required additional indicators on non-biodiversity variables, 352...

Evaluating Temporal Consistency in Marine Biodiversity Hotspots

OpenAIRE

Piacenza, Susan E.; Thurman, Lindsey L.; Barner, Allison K.; Benkwitt, Cassandra E.; Boersma, Kate S.; Cerny-Chipman, Elizabeth B.; Ingeman, Kurt E.; Kindinger, Tye L.; Lindsley, Amy J.; Nelson, Jake; Reimer, Jessica N.; Rowe, Jennifer C.; Shen, Chenchen; Thompson, Kevin A.; Heppell, Selina S.

2015-01-01

With the ongoing crisis of biodiversity loss and limited resources for conservation, the concept of biodiversity hotspots has been useful in determining conservation priority areas. However, there has been limited research into how temporal variability in biodiversity may influence conservation area prioritization. To address this information gap, we present an approach to evaluate the temporal consistency of biodiversity hotspots in large marine ecosystems. Using a large scale, public monito...

Drastic underestimation of amphipod biodiversity in the endangered Irano-Anatolian and Caucasus biodiversity hotspots.

Science.gov (United States)

Katouzian, Ahmad-Reza; Sari, Alireza; Macher, Jan N; Weiss, Martina; Saboori, Alireza; Leese, Florian; Weigand, Alexander M

2016-03-01

Biodiversity hotspots are centers of biological diversity and particularly threatened by anthropogenic activities. Their true magnitude of species diversity and endemism, however, is still largely unknown as species diversity is traditionally assessed using morphological descriptions only, thereby ignoring cryptic species. This directly limits evidence-based monitoring and management strategies. Here we used molecular species delimitation methods to quantify cryptic diversity of the montane amphipods in the Irano-Anatolian and Caucasus biodiversity hotspots. Amphipods are ecosystem engineers in rivers and lakes. Species diversity was assessed by analysing two genetic markers (mitochondrial COI and nuclear 28S rDNA), compared with morphological assignments. Our results unambiguously demonstrate that species diversity and endemism is dramatically underestimated, with 42 genetically identified freshwater species in only five reported morphospecies. Over 90% of the newly recovered species cluster inside Gammarus komareki and G. lacustris; 69% of the recovered species comprise narrow range endemics. Amphipod biodiversity is drastically underestimated for the studied regions. Thus, the risk of biodiversity loss is significantly greater than currently inferred as most endangered species remain unrecognized and/or are only found locally. Integrative application of genetic assessments in monitoring programs will help to understand the true magnitude of biodiversity and accurately evaluate its threat status.

Spectrum of concepts associated with the term "biodiversity": a case study in a biodiversity hotspot in South America.

Science.gov (United States)

Cerda, Claudia; Bidegain, Iñigo

2018-03-10

In most conservation programs that include public participation, the word "biodiversity" is used. However, many variables influence the public understanding of the term and determine what biodiversity means to local stakeholders. Those representations of the concept must be addressed and included in conservation actions. We asked 47 local stakeholders in a biosphere reserve (BR) located in a biodiversity hotspot in South America, for whom the conservation of biodiversity is not the main focus of interest, to explain how they understand the term "biodiversity." Twenty-two different definitions were provided, ranging from purely ecological concepts to the human dimension. Although the diversity of animals and plants was the most frequently mentioned concept, the variety of concepts that emerged suggested that more explicit examples of social constructions must be considered in public participatory projects and environmental education programs. Actors living in a close relationship with nature provide a greater diversity of elements in defining biodiversity, visualizing ecological but also instrumental values.

Appreciation, Use, and Management of Biodiversity and Ecosystem Services in California's Working Landscapes

Science.gov (United States)

Plieninger, Tobias; Ferranto, Shasta; Huntsinger, Lynn; Kelly, Maggi; Getz, Christy

2012-09-01

"Working landscapes" is the concept of fostering effective ecosystem stewardship and conservation through active human presence and management and integrating livestock, crop, and timber production with the provision of a broad range of ecosystem services at the landscape scale. Based on a statewide survey of private landowners of "working" forests and rangelands in California, we investigated whether owners who are engaged in commercial livestock or timber production appreciate and manage biodiversity and ecosystem services on their land in different ways than purely residential owners. Both specific uses and management practices, as well as underlying attitudes and motivations toward biodiversity and ecosystem services, were assessed. Correlation analysis showed one bundle of ecosystem goods and services (e.g., livestock, timber, crops, and housing) that is supported by some landowners at the community level. Another closely correlated bundle of biodiversity and ecosystem services includes recreation, hunting/fishing, wildlife habitat, and fire prevention. Producers were more likely to ally with the first bundle and residential owners with the second. The survey further confirmed that cultural ecosystem services and quality-of-life aspects are among the primary amenities that motivate forest and rangeland ownership regardless of ownership type. To live near natural beauty was the most important motive for both landowner groups. Producers were much more active in management for habitat improvement and other environmental goals than residential owners. As the number of production-oriented owners decreases, developing strategies for encouraging environment-positive management by all types of landowners is crucial.

Steel and biodiversity: a promising alliance

Science.gov (United States)

Peters, Klaus; Colla, Valentina; Moonen, Anna Camilla; Branca, Teresa Annunziata; Moretto, Deny Del; Ragaglini, Giorgio; Delmiro, Vanesa Maria Menendez; Romaniello, Lea; Carler, Sophie; Hodges, Jennifer; Bullock, Matthew; Malfa, Enrico

2018-06-01

The term "Biodiversity" derives from a contraction of "biological diversity" and commonly refers to a measure of the variety of organisms, which are present in different ecosystems, by considering genetic variation, ecosystem variation, or species variation within an area, biome, or planet. Biodiversity is receiving an ever-increasing attention at many levels of European society as well as from many industrial sectors, and a variety of actions are being put in place in order to protect, preserve and increase it. The present paper provides examples of the capabilities and potentials of the steel sector with respect to biodiversity. In effect, steel is a valuable and fundamental structural material in order to develop measures and systems for protection of biodiversity. On the other hand, biodiversity can represent for the steel industry not only a heritage to preserve, but, through its functional traits, it can become an opportunity, offering an ecosystem's perspective to all industrial companies. In the paper, steel relevant topics and applications are analyzed leading to the conclusion that biodiversity should be exploited and can play a role with potentially relevant benefits both for the company and for local communities. Sustainability and Ecodesign of processes, products and services

The Sweet and the Bitter: Intertwined Positive and Negative Social Impacts of a Biodiversity Offset

Directory of Open Access Journals (Sweden)

Cécile Bidaud

2017-01-01

Full Text Available Major developments, such as mines, will often have unavoidable environmental impacts. In such cases, investors, governments, or even a company's own standards increasingly require implementation of biodiversity offsets (investment in conservation with a measurable outcome with the aim of achieving 'no net loss' or even a 'net gain' of biodiversity. Where conservation is achieved by changing the behaviour of people directly using natural resources, the offset might be expected to have social impacts but such impacts have received very little attention. Using the case study of Ambatovy, a major nickel mine in the eastern rainforests of Madagascar and a company at the vanguard of developing biodiversity offsets, we explore local perceptions of the magnitude and distribution of impacts of the biodiversity offset project on local wellbeing. We used both qualitative (key informant interviews and focus group discussions and quantitative (household survey methods. We found that the biodiversity offsets, which comprise both conservation restrictions and development activities, influenced wellbeing in a mixture of positive and negative ways. However, overall, respondents felt that they had suffered a net cost from the biodiversity offset. It is a matter of concern that benefits from development activities do not compensate for the costs of the conservation restrictions, that those who bear the costs are not the same people as those who benefit, and that there is a mismatch in timing between the immediate restrictions and the associated development activities which take some time to deliver benefits. These issues matter both from the perspective of environmental justice, and for the long-term sustainability of the biodiversity benefits the offset is supposed to deliver.

Community Structure of Lithotrophically-Driven Hydrothermal Microbial Mats from the Mariana Arc and Back-Arc

Directory of Open Access Journals (Sweden)

Kevin W. Hager

2017-08-01

Full Text Available The Mariana region exhibits a rich array of hydrothermal venting conditions in a complex geological setting, which provides a natural laboratory to study the influence of local environmental conditions on microbial community structure as well as large-scale patterns in microbial biogeography. We used high-throughput amplicon sequencing of the bacterial small subunit (SSU rRNA gene from 22 microbial mats collected from four hydrothermally active locations along the Mariana Arc and back-arc to explore the structure of lithotrophically-based microbial mat communities. The vent effluent was classified as iron- or sulfur-rich corresponding with two distinct community types, dominated by either Zetaproteobacteria or Epsilonproteobacteria, respectively. The Zetaproteobacterial-based communities had the highest richness and diversity, which supports the hypothesis that Zetaproteobacteria function as ecosystem engineers creating a physical habitat within a chemical environment promoting enhanced microbial diversity. Gammaproteobacteria were also high in abundance within the iron-dominated mats and some likely contribute to primary production. In addition, we also compare sampling scale, showing that bulk sampling of microbial mats yields higher diversity than micro-scale sampling. We present a comprehensive analysis and offer new insights into the community structure and diversity of lithotrophically-driven microbial mats from a hydrothermal region associated with high microbial biodiversity. Our study indicates an important functional role of for the Zetaproteobacteria altering the mat habitat and enhancing community interactions and complexity.

Soil biodiversity for agricultural sustainability

NARCIS (Netherlands)

Brussaard, L.; Ruiter, de P.C.; Brown, G.G.

2007-01-01

We critically highlight some evidence for the importance of soil biodiversity to sustaining (agro-)ecosystem functioning and explore directions for future research. We first deal with resistance and resilience against abiotic disturbance and stress. There is evidence that soil biodiversity does

Soil Communities of Central Park, New York City: A Biodiversity Melting Pot

Science.gov (United States)

Ramirez, K. S.; Leff, J. W.; Wall, D. H.; Fierer, N.

2013-12-01

The majority of earth's biodiversity lives in and makes up the soil, but the majority of soil biodiversity has yet to be characterized or even quantified. This may be especially true of urban soil systems. The last decade of advances in molecular, technical and bioinformatic techniques have contributed greatly to our understanding of belowground biodiversity, from global distribution to species counts. Yet, much of this work has been done in ';natural' systems and it is not known if established patterns of distribution, especially in relation to soil factors hold up in urban soils. Urban soils are intensively managed and disturbed, often by effects unique to urban settings. It remains unclear how urban pressures influence soil biodiversity, or if there is a defined or typical ';urban soil community'. Here we describe a study to examine the total soil biodiversity - Bacteria, Archaea and Eukarya- of Central Park, New York City and test for patterns of distribution and relationships to soil characteristics. We then compare the biodiversity of Central Park to 57 global soils, spanning a number of biomes from Alaska to Antarctica. In this way we can identify similarities and differences in soil communities of Central Park to soils from ';natural' systems. To generate a broad-scale survey of total soil biodiversity, 596 soil samples were collected from across Central Park (3.41 km2). Soils varied greatly in vegetation cover and soil characteristics (pH, moisture, soil C and soil N). Using high-throughput Illumina sequencing technology we characterized the complete soil community from 16S rRNA (Bacteria and Archaea) and 18S rRNA gene sequences (Eukarya). Samples were rarified to 40,000 sequences per sample. To compare Central Park to the 57 global soils the complete soil community of the global soils was also characterized using Illumina sequencing technology. All samples were rarified to 40,000 sequences per sample. The total measured biodiversity in Central Park was

Preliminary assessment of sponge biodiversity on Saba Bank, Netherlands Antilles.

Directory of Open Access Journals (Sweden)

Robert W Thacker

Full Text Available BACKGROUND: Saba Bank Atoll, Netherlands Antilles, is one of the three largest atolls on Earth and provides habitat for an extensive coral reef community. To improve our knowledge of this vast marine resource, a survey of biodiversity at Saba Bank included a multi-disciplinary team that sampled fishes, mollusks, crustaceans, macroalgae, and sponges. METHODOLOGY/PRINCIPAL FINDINGS: A single member of the dive team conducted surveys of sponge biodiversity during eight dives at six locations, at depths ranging from 15 to 30 m. This preliminary assessment documented the presence of 45 species pooled across multiple locations. Rarefaction analysis estimated that only 48 to 84% of species diversity was sampled by this limited effort, clearly indicating a need for additional surveys. An analysis of historical collections from Saba and Saba Bank revealed an additional 36 species, yielding a total of 81 sponge species recorded from this area. CONCLUSIONS/SIGNIFICANCE: This observed species composition is similar to that found on widespread Caribbean reefs, indicating that the sponge fauna of Saba Bank is broadly representative of the Caribbean as a whole. A robust population of the giant barrel sponge, Xestospongia muta, appeared healthy with none of the signs of disease or bleaching reported from other Caribbean reefs; however, more recent reports of anchor chain damage to these sponges suggests that human activities can have dramatic impacts on these communities. Opportunities to protect this extremely large habitat should be pursued, as Saba Bank may serve as a significant reservoir of sponge species diversity.

Semi-automatic long-term acoustic surveying

DEFF Research Database (Denmark)

Andreassen, Tórur; Surlykke, Annemarie; Hallam, John

2014-01-01

Increasing concern about decline in biodiversity has created a demand for population surveys. Acoustic monitoring is an efficient non-invasive method, which may be deployed for surveys of animals as diverse as insects, birds, and bats. Long-term unmanned automatic monitoring may provide unique...... to determine bat behavior and correct for the bias toward loud bats inherent in acoustic surveying....

Potential impacts of global warming on Australia's unique tropical biodiversity and implications for tropical biodiversity in general

International Nuclear Information System (INIS)

Hilbert, David W

2007-01-01

Full text: Full text: Globally, forest clearing is often thought to be the greatest threat to biodiversity in the tropics, and rates of clearing are certainly highest there, particularly in tropical South-East Asia. Climate change in the tropics has been less studied in tropical regions than in temperate, boreal or arctic ecosystems. However, modelling studies in Australian rainforests indicate that climate change may be a particularly significant threat to the long-term preservation of the biodiversity of tropical, rainforest biodiversity. Our research has shown that global warming can have a particularly strong impact on the biodiversity of mountainous tropical regions, including the Wet Tropics of north-east Queensland. Here, the mountain tops and higher tablelands are relatively cool islands in a sea of warmer climates. These species-rich islands, mostly limited in their biodiversity by warm interglacial periods, are separated from each other by the warmer valleys and form a scattered archipelago of habitat for organisms that are unable to survive and reproduce in warmer climates. Many of the endemic Australian Wet Tropics species live only in these cooler regions. Similar situations occur throughout south-east Asia and in the highlands of the Neotropics. Unfortunately, these upland and highland areas represent the majority of biodiversity conservation areas because they are less suitable for clearing for agriculture. This presentation will summarise research about the potential impacts of climate change on the biodiversity in Australia's rainforests, the potential implications for tropical biodiversity in general and discuss the limitations of these projections and the need for further research that could reduce uncertainties and inform effective adaptation strategies

Biodiversity scenarios neglect future land-use changes.

Science.gov (United States)

Titeux, Nicolas; Henle, Klaus; Mihoub, Jean-Baptiste; Regos, Adrián; Geijzendorffer, Ilse R; Cramer, Wolfgang; Verburg, Peter H; Brotons, Lluís

2016-07-01

Efficient management of biodiversity requires a forward-looking approach based on scenarios that explore biodiversity changes under future environmental conditions. A number of ecological models have been proposed over the last decades to develop these biodiversity scenarios. Novel modelling approaches with strong theoretical foundation now offer the possibility to integrate key ecological and evolutionary processes that shape species distribution and community structure. Although biodiversity is affected by multiple threats, most studies addressing the effects of future environmental changes on biodiversity focus on a single threat only. We examined the studies published during the last 25 years that developed scenarios to predict future biodiversity changes based on climate, land-use and land-cover change projections. We found that biodiversity scenarios mostly focus on the future impacts of climate change and largely neglect changes in land use and land cover. The emphasis on climate change impacts has increased over time and has now reached a maximum. Yet, the direct destruction and degradation of habitats through land-use and land-cover changes are among the most significant and immediate threats to biodiversity. We argue that the current state of integration between ecological and land system sciences is leading to biased estimation of actual risks and therefore constrains the implementation of forward-looking policy responses to biodiversity decline. We suggest research directions at the crossroads between ecological and environmental sciences to face the challenge of developing interoperable and plausible projections of future environmental changes and to anticipate the full range of their potential impacts on biodiversity. An intergovernmental platform is needed to stimulate such collaborative research efforts and to emphasize the societal and political relevance of taking up this challenge. © 2016 John Wiley & Sons Ltd.

Biodiversity of the Arabian Sea

Digital Repository Service at National Institute of Oceanography (India)

Parulekar, A.H.

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Biodiversity mapping in sensitive areas

Energy Technology Data Exchange (ETDEWEB)

Jensen, Tor; Ulssnes, Amund; Nissen-Lie, Torild [DNV, Oslo (Norway)

2008-07-01

When oil companies are entering new unexplored areas their potential footprint on the environment should be measured in a way that necessary action could be included in the planning of the activity. These actions should reduce the impact to accepted levels. Traditional baseline studies, including sediment and macro fauna sampling, are carried out in homogeneous areas. In heterogeneous and unexplored areas there is a need for more information than these traditional sediment analyses can give. To increase the knowledge from specific areas biodiversity mapping has been carried out. To combine the knowledge from ROV surveys, modelling, current measurements, sediment characteristics, seismic, macro fauna and background levels of chemicals contents in the sediments, both prior to the exploration, and after the drilling have taken place the operator can document their footprint on the marine environment. (author)

Economic inequality predicts biodiversity loss.

Science.gov (United States)

Mikkelson, Gregory M; Gonzalez, Andrew; Peterson, Garry D

2007-05-16

Human activity is causing high rates of biodiversity loss. Yet, surprisingly little is known about the extent to which socioeconomic factors exacerbate or ameliorate our impacts on biological diversity. One such factor, economic inequality, has been shown to affect public health, and has been linked to environmental problems in general. We tested how strongly economic inequality is related to biodiversity loss in particular. We found that among countries, and among US states, the number of species that are threatened or declining increases substantially with the Gini ratio of income inequality. At both levels of analysis, the connection between income inequality and biodiversity loss persists after controlling for biophysical conditions, human population size, and per capita GDP or income. Future research should explore potential mechanisms behind this equality-biodiversity relationship. Our results suggest that economic reforms would go hand in hand with, if not serving as a prerequisite for, effective conservation.

Forest soil microbial communities: Using metagenomic approaches to survey permanent plots

Science.gov (United States)

Amy L. Ross-Davis; Jane E. Stewart; John W. Hanna; John D. Shaw; Andrew T. Hudak; Theresa B. Jain; Robert J. Denner; Russell T. Graham; Deborah S. Page-Dumroese; Joanne M. Tirocke; Mee-Sook Kim; Ned B. Klopfenstein

2014-01-01

Forest soil ecosystems include some of the most complex microbial communities on Earth (Fierer et al. 2012). These assemblages of archaea, bacteria, fungi, and protists play essential roles in biogeochemical cycles (van der Heijden et al. 2008) and account for considerable terrestrial biomass (Nielsen et al. 2011). Yet, determining the microbial composition of forest...

Biodiversity technologies: tools as change agents

Science.gov (United States)

Snaddon, Jake; Petrokofsky, Gillian; Jepson, Paul; Willis, Katherine J.

2013-01-01

A meeting on Biodiversity Technologies was held by the Biodiversity Institute, Oxford on the 27–28 of September 2012 at the Department of Zoology, University of Oxford. The symposium brought together 36 speakers from North America, Australia and across Europe, presenting the latest research on emerging technologies in biodiversity science and conservation. Here we present a perspective on the general trends emerging from the symposium. PMID:23221877

Agreed but not preferred: expert views on taboo options for biodiversity conservation, given climate change.

Science.gov (United States)

Hagerman, Shannon M; Satterfield, Terre

2014-04-01

Recent research indicates increasing openness among conservation experts toward a set of previously controversial proposals for biodiversity protection. These include actions such as assisted migration, and the application of climate-change-informed triage principles for decision-making (e.g., forgoing attention to target species deemed no longer viable). Little is known however, about the levels of expert agreement across different conservation adaptation actions, or the preferences that may come to shape policy recommendations. In this paper, we report findings from a web-based survey of biodiversity experts that assessed: (1) perceived risks of climate change (and other drivers) to biodiversity, (2) relative importance of different conservation goals, (3) levels of agreement/disagreement with the potential necessity of unconventional-taboo actions and approaches including affective evaluations of these, (4) preferences regarding the most important adaptation action for biodiversity, and (5) perceived barriers and strategic considerations regarding implementing adaptation initiatives. We found widespread agreement with a set of previously contentious approaches and actions, including the need for frameworks for prioritization and decision-making that take expected losses and emerging novel ecosystems into consideration. Simultaneously, this survey found enduring preferences for conventional actions (such as protected areas) as the most important policy action, and negative affective responses toward more interventionist proposals. We argue that expert views are converging on agreement across a set of taboo components in ways that differ from earlier published positions, and that these views are tempered by preferences for existing conventional actions and discomfort toward interventionist options. We discuss these findings in the context of anticipating some of the likely contours of future conservation debates. Lastly, we underscore the critical need for

Crowdfunding biodiversity conservation.

Science.gov (United States)

Gallo-Cajiao, E; Archibald, C; Friedman, R; Steven, R; Fuller, R A; Game, E T; Morrison, T H; Ritchie, E G

2018-05-26

Raising funds is critical for conserving biodiversity and hence so too is scrutinizing emerging financial mechanisms that might help achieve this goal. In this context, anecdotal evidence indicates crowdfunding is being used to support a variety of activities needed for biodiversity conservation, yet its magnitude and allocation remain largely unknown. We conducted a global analysis to help address this knowledge gap, based on empirical data from conservation-focused projects extracted from crowdfunding platforms. For each project, we determined the funds raised, date, country of implementation, proponent characteristics, activity type, biodiversity realm, and target taxa. We identified 72 relevant platforms and 577 conservation-focused projects that have raised US$4 790 634 since 2009. Whilst proponents were based in 38 countries, projects were delivered across 80 countries, indicating a potential mechanism of resource mobilization. Proponents were from non-governmental organizations (35%), universities (30%), or were freelancers (26%). Most projects were for research (40%), persuasion (31%), and on-ground actions (21%). Projects have focused primarily on species (57.7%) and terrestrial ecosystems (20.3%), and less on marine (8.8%) and freshwater ecosystems (3.6%). Projects have focused on 208 species, including a disproportionate number of threatened bird and mammal species. Crowdfunding for biodiversity conservation has now become a global phenomenon and presents signals for potential expansion, despite possible pitfalls. Opportunities arise from its spatial amplifying effect, steady increase over time, inclusion of Cinderella species, adoption by multiple actors, and funding of a range of activities beyond research. Our study paves the way for further research on key questions, such as campaign success rates, effectiveness, and drivers of adoption. Even though the capital input of crowdfunding so far has been modest compared to other conservation finance

Indicators for Monitoring Soil Biodiversity

DEFF Research Database (Denmark)

Bispo, A.; Cluzeau, D.; Creamer, R.

2009-01-01

is made for a set of suitable indicators for monitoring the decline in soil biodiversity (Bispo et al. 2007). These indicators were selected both from a literature review and an inventory of national monitoring programmes. Decline in soil biodiversity was defined as the reduction of forms of life living...... indicators are actually measured.   For monitoring application it was considered in ENVASSO that only three key indicators per soil stress were practical. For indicating biodiversity decline it was difficult to arrive at a small set of indicators due to the complexity of soil biota and functions. Therefore...

Mangrove microbial diversity and the impact of trophic contamination.

Science.gov (United States)

Bouchez, Agnès; Pascault, Noémie; Chardon, Cècile; Bouvy, Marc; Cecchi, Philippe; Lambs, Luc; Herteman, Mélanie; Fromard, François; Got, Patrice; Leboulanger, Christophe

2013-01-15

Mangroves are threatened ecosystems that provide numerous ecosystem services, especially through their wide biodiversity, and their bioremediation capacity is a challenging question in tropical areas. In a mangrove in Mayotte, we studied the potential role of microbial biofilm communities in removing nutrient loads from pre-treated wastewater. Microbial community samples were collected from tree roots, sediments, water, and from a colonization device, and their structure and dynamics were compared in two areas: one exposed to sewage and the other not. The samples from the colonization devices accurately reflected the natural communities in terms of diversity. Communities in the zone exposed to sewage were characterized by more green algae and diatoms, higher bacteria densities, as well as different compositions. In the area exposed to sewage, the higher cell densities associated with specific diversity patterns highlighted adapted communities that may play a significant role in the fate of nutrients. Copyright © 2012 Elsevier Ltd. All rights reserved.

The biodiversity-dependent ecosystem service debt.

Science.gov (United States)

Isbell, Forest; Tilman, David; Polasky, Stephen; Loreau, Michel

2015-02-01

Habitat destruction is driving biodiversity loss in remaining ecosystems, and ecosystem functioning and services often directly depend on biodiversity. Thus, biodiversity loss is likely creating an ecosystem service debt: a gradual loss of biodiversity-dependent benefits that people obtain from remaining fragments of natural ecosystems. Here, we develop an approach for quantifying ecosystem service debts, and illustrate its use to estimate how one anthropogenic driver, habitat destruction, could indirectly diminish one ecosystem service, carbon storage, by creating an extinction debt. We estimate that c. 2-21 Pg C could be gradually emitted globally in remaining ecosystem fragments because of plant species loss caused by nearby habitat destruction. The wide range for this estimate reflects substantial uncertainties in how many plant species will be lost, how much species loss will impact ecosystem functioning and whether plant species loss will decrease soil carbon. Our exploratory analysis suggests that biodiversity-dependent ecosystem service debts can be globally substantial, even when locally small, if they occur diffusely across vast areas of remaining ecosystems. There is substantial value in conserving not only the quantity (area), but also the quality (biodiversity) of natural ecosystems for the sustainable provision of ecosystem services. © 2014 John Wiley & Sons Ltd/CNRS.

Genome-wide association study of Arabidopsis thaliana leaf microbial community.

Science.gov (United States)

Horton, Matthew W; Bodenhausen, Natacha; Beilsmith, Kathleen; Meng, Dazhe; Muegge, Brian D; Subramanian, Sathish; Vetter, M Madlen; Vilhjálmsson, Bjarni J; Nordborg, Magnus; Gordon, Jeffrey I; Bergelson, Joy

2014-11-10

Identifying the factors that influence the outcome of host-microbial interactions is critical to protecting biodiversity, minimizing agricultural losses and improving human health. A few genes that determine symbiosis or resistance to infectious disease have been identified in model species, but a comprehensive examination of how a host genotype influences the structure of its microbial community is lacking. Here we report the results of a field experiment with the model plant Arabidopsis thaliana to identify the fungi and bacteria that colonize its leaves and the host loci that influence the microbe numbers. The composition of this community differs among accessions of A. thaliana. Genome-wide association studies (GWAS) suggest that plant loci responsible for defense and cell wall integrity affect variation in this community. Furthermore, species richness in the bacterial community is shaped by host genetic variation, notably at loci that also influence the reproduction of viruses, trichome branching and morphogenesis.

Enhancing the Biodiversity of Ditches in Intensively Managed UK Farmland.

Directory of Open Access Journals (Sweden)

Rosalind F Shaw

Full Text Available Drainage ditches, either seasonally flooded or permanent, are commonly found on intensively managed lowland farmland in the UK. They are potentially important for wetland biodiversity but, despite their ubiquity, information on their biodiversity and management in the wider countryside is scarce. We surveyed 175 ditches for their physical and chemical characteristics, spatial connectivity, plant communities and aquatic invertebrates in an area of intensively managed farmland in Oxfordshire, UK and collected information on ditch management from farmer interviews. Water depth and shade had a small impact on the diversity of plant and invertebrate communities in ditches. Increased shade over the ditch channel resulted in reduced taxonomic richness of both channel vegetation and aquatic invertebrates and channel vegetation cover was lower at shaded sites. Invertebrate taxonomic richness was higher when water was deeper. Spatial connectivity had no detectable impact on the aquatic invertebrate or plant communities found in ditches. The number of families within the orders Ephemeroptera, Plecoptera and Trichoptera (EPT, which contain many pollution-sensitive species, declined with decreasing pH of ditch water. As time since dredging increased, the number of EPT families increased in permanent ditches but decreased in temporary ditches. Whether or not a ditch was in an agri-environment scheme had little impact on the reported management regime or biodiversity value of the ditch. Measures for increasing the amount of water in ditches, by increasing the water depth or promoting retention of water in ditches, could increase the biodiversity value of ditches in agricultural land. Some temporary ditches for specialised species should be retained. Reducing the amount of shade over narrow ditches by managing adjacent hedgerows is also likely to increase the species diversity of plant and invertebrate communities within the ditch. We recommend that to preserve

Enhancing the Biodiversity of Ditches in Intensively Managed UK Farmland.

Science.gov (United States)

Shaw, Rosalind F; Johnson, Paul J; Macdonald, David W; Feber, Ruth E

2015-01-01

Drainage ditches, either seasonally flooded or permanent, are commonly found on intensively managed lowland farmland in the UK. They are potentially important for wetland biodiversity but, despite their ubiquity, information on their biodiversity and management in the wider countryside is scarce. We surveyed 175 ditches for their physical and chemical characteristics, spatial connectivity, plant communities and aquatic invertebrates in an area of intensively managed farmland in Oxfordshire, UK and collected information on ditch management from farmer interviews. Water depth and shade had a small impact on the diversity of plant and invertebrate communities in ditches. Increased shade over the ditch channel resulted in reduced taxonomic richness of both channel vegetation and aquatic invertebrates and channel vegetation cover was lower at shaded sites. Invertebrate taxonomic richness was higher when water was deeper. Spatial connectivity had no detectable impact on the aquatic invertebrate or plant communities found in ditches. The number of families within the orders Ephemeroptera, Plecoptera and Trichoptera (EPT), which contain many pollution-sensitive species, declined with decreasing pH of ditch water. As time since dredging increased, the number of EPT families increased in permanent ditches but decreased in temporary ditches. Whether or not a ditch was in an agri-environment scheme had little impact on the reported management regime or biodiversity value of the ditch. Measures for increasing the amount of water in ditches, by increasing the water depth or promoting retention of water in ditches, could increase the biodiversity value of ditches in agricultural land. Some temporary ditches for specialised species should be retained. Reducing the amount of shade over narrow ditches by managing adjacent hedgerows is also likely to increase the species diversity of plant and invertebrate communities within the ditch. We recommend that to preserve or enhance the

Teaching Biodiversity & Evolution through Travel Course Experiences

Science.gov (United States)

Zervanos, Stam. M.; McLaughlin, Jacqueline S.

2003-01-01

Biodiversity is the extraordinary variety of life in this planet. In order to be fully appreciated, biodiversity needs to be experienced firsthand, or "experientially." Thus, the standard classroom lecture format is not the ideal situation for teaching biodiversity and evolutionary concepts, in that student interest and understanding are…

Biology Student Teachers' Conceptual Frameworks regarding Biodiversity

Science.gov (United States)

Dikmenli, Musa

2010-01-01

In recent years, biodiversity has received a great deal of attention worldwide, especially in environmental education. The reasons for this attention are the increase of human activities on biodiversity and environmental problems. The purpose of this study is to investigate biology student teachers' conceptual frameworks regarding biodiversity.…

Riparian landscapes: Linking geodiversity with habitat and biodiversity

Science.gov (United States)

Chmieleski, Jana; Danzeisen, Laura

2017-04-01

Keywords: Oder valley, biodiversity, geodiversity River landscapes of all scales originally showed a high diversity of structures and habitats at a small spatial entity, such as the stream beds, terrasses, sand and gravel banks. This variety, with a lot of different elements, patches and patterns, represents not only a variety of geoelements or geomorhological features but also a large biodiversity, both of habitats and species. Riparian landscapes are both, a natural as well as a geoheritage, often even a cultural heritage (sustainabe land use practices). Embankments, utilization for agriculture, constructions for navigation, management measures lead to a strong loss of these structures. This impacts the value of the landscape as well ecosystem functions, not only the biodiversity and the geodiversity but also the recreation function or the aesthetic values. A case study from the National Park Lower Oder Valley in the Northeastern part of Germany, wich is also part of a Geopark („Eiszeitland am Oderrand") presents the connections of the diversity of geomorphological features with biodiversity and shows the loss of features (loss of values) due to intensive utilisation by using GIS-analysis and landscape-metrics. The Northern part of the Oder valley (National Park, transnational protection area of Germany and Poland) have been modified by man since centuries but even so remained in near-natural state that allows semi-(natural) stream dynamics. While the Oder's reparian zone is marked by the stream itself, by its bayous, reed beds, periodically flooded wet meadows and by its natural riparian forest the mineral morainic plateaus are marked by semi-natural forests and dry grasslands. Two areas of different degradation states, a) near-natural and wilderness area and b) grassland area will be compared in order to identify: quantity and extent of features, relation of measure and coverage, connectivity with other features, quantity and types of habitats (with

Economic inequality predicts biodiversity loss.

Directory of Open Access Journals (Sweden)

Gregory M Mikkelson

Full Text Available Human activity is causing high rates of biodiversity loss. Yet, surprisingly little is known about the extent to which socioeconomic factors exacerbate or ameliorate our impacts on biological diversity. One such factor, economic inequality, has been shown to affect public health, and has been linked to environmental problems in general. We tested how strongly economic inequality is related to biodiversity loss in particular. We found that among countries, and among US states, the number of species that are threatened or declining increases substantially with the Gini ratio of income inequality. At both levels of analysis, the connection between income inequality and biodiversity loss persists after controlling for biophysical conditions, human population size, and per capita GDP or income. Future research should explore potential mechanisms behind this equality-biodiversity relationship. Our results suggest that economic reforms would go hand in hand with, if not serving as a prerequisite for, effective conservation.

Compensation for biodiversity loss – Advice to the Netherlands' Taskforce on Biodiversity and Natural Resources

NARCIS (Netherlands)

Bie, de S.; Dessel, van B.

2011-01-01

Compensation of damage to biodiversity is one of the mechanisms to settle environmental costs. It concerns creating new opportunities for biodiversity, which as a minimum equals the residual impact after a company or organization has attempted to avoid, prevent and mitigate that impact. In the

Cooperation in carbon source degradation shapes spatial self-organization of microbial consortia on hydrated surfaces.

Science.gov (United States)

Tecon, Robin; Or, Dani

2017-03-06

Mounting evidence suggests that natural microbial communities exhibit a high level of spatial organization at the micrometric scale that facilitate ecological interactions and support biogeochemical cycles. Microbial patterns are difficult to study definitively in natural environments due to complex biodiversity, observability and variable physicochemical factors. Here, we examine how trophic dependencies give rise to self-organized spatial patterns of a well-defined bacterial consortium grown on hydrated surfaces. The model consortium consisted of two Pseudomonas putida mutant strains that can fully degrade the aromatic hydrocarbon toluene. We demonstrated that obligate cooperation in toluene degradation (cooperative mutualism) favored convergence of 1:1 partner ratio and strong intermixing at the microscale (10-100 μm). In contrast, competition for benzoate, a compound degraded independently by both strains, led to distinct segregation patterns. Emergence of a persistent spatial pattern has been predicted for surface attached microbial activity in liquid films that mediate diffusive exchanges while permitting limited cell movement (colony expansion). This study of a simple microbial consortium offers mechanistic glimpses into the rules governing the assembly and functioning of complex sessile communities, and points to general principles of spatial organization with potential applications for natural and engineered microbial systems.

Place prioritization for biodiversity content

Indian Academy of Sciences (India)

The prioritization of places on the basis of biodiversity content is part of any systematic biodiversity conservation planning process. The place prioritization procedure implemented in the ResNet software package is described. This procedure is primarily based on the principles of rarity and complementarity. Application of the ...

Brazilian Microbiome Project: revealing the unexplored microbial diversity--challenges and prospects.

Science.gov (United States)

Pylro, Victor Satler; Roesch, Luiz Fernando Wurdig; Ortega, José Miguel; do Amaral, Alexandre Morais; Tótola, Marcos Rogério; Hirsch, Penny Ruth; Rosado, Alexandre Soares; Góes-Neto, Aristóteles; da Costa da Silva, Artur Luiz; Rosa, Carlos Augusto; Morais, Daniel Kumazawa; Andreote, Fernando Dini; Duarte, Gabriela Frois; de Melo, Itamar Soares; Seldin, Lucy; Lambais, Márcio Rodrigues; Hungria, Mariangela; Peixoto, Raquel Silva; Kruger, Ricardo Henrique; Tsai, Siu Mui; Azevedo, Vasco

2014-02-01

The Brazilian Microbiome Project (BMP) aims to assemble a Brazilian Metagenomic Consortium/Database. At present, many metagenomic projects underway in Brazil are widely known. Our goal in this initiative is to co-ordinate and standardize these together with new projects to come. It is estimated that Brazil hosts approximately 20 % of the entire world's macroorganism biological diversity. It is 1 of the 17 countries that share nearly 70 % of the world's catalogued animal and plant species, and is recognized as one of the most megadiverse countries. At the end of 2012, Brazil has joined GBIF (Global Biodiversity Information Facility), as associated member, to improve the access to the Brazilian biodiversity data in a free and open way. This was an important step toward increasing international collaboration and clearly shows the commitment of the Brazilian government in directing national policies toward sustainable development. Despite its importance, the Brazilian microbial diversity is still considered to be largely unknown, and it is clear that to maintain ecosystem dynamics and to sustainably manage land use, it is crucial to understand the biological and functional diversity of the system. This is the first attempt to collect and collate information about Brazilian microbial genetic and functional diversity in a systematic and holistic manner. The success of the BMP depends on a massive collaborative effort of both the Brazilian and international scientific communities, and therefore, we invite all colleagues to participate in this project.

Biodiversity management of organic orchard enhances both ecological and economic profitability.

Science.gov (United States)

Meng, Jie; Li, Lijun; Liu, Haitao; Li, Yong; Li, Caihong; Wu, Guanglei; Yu, Xiaofan; Guo, Liyue; Cheng, Da; Muminov, Mahmud A; Liang, Xiaotian; Jiang, Gaoming

2016-01-01

Organic farming has been regarded as an alternative solution for both agricultural sustainability and human health maintenance. Few researches have concentrated on the differences of biodiversity and eco-economic benefits between organic and conventional orchards. Organic management (OM) of orchards mainly includes taking advantage of natural enemies and beneficial weeds as well as soil organisms and controlling harmful pests. Here we conducted a three-year experiment on the effects of managing biodiversity in an organic apple orchard, using cattle manure to enrich soil biota, propagating native plant to suppress weeds and applying ecological pest management to control pests. The effect was assessed against the conventional management (CM) model. We found that OM enhanced soil organic carbon, total nitrogen, microbial biomass carbon and nitrogen. The 16S rDNA high-throughput sequencing results indicated that the dominant bacterial phyla of the top soil were Proteobacteria and Actinobacteria, and OM had richer bacteria diversity with a 7% higher Shannon's index than the CM. In particular, the relative abundance of rhizobium in the OM was higher than that of the CM. For OM, Duchesnea indica was an ideal ground-cover plant to control weeds through winning the niche competition and thus decreased weeds' Simpson, Shannon-Wiener and Pielou index by 38.2%, 53.8% and 16.9% separately. The phototactic pests' weight and scarab beetle's population were effectively decreased by 35% and 86% respectively through long time control and prevention. OM had an average of 20 times more earthworms than CM, and the maximum density had reached 369 m(-2) (0-20 cm soil). The dominant earthworm species of the OM were detritivores which preferring soil with high organic matter content. Due to no synthetic chemicals being used, the OM produced much safer apple fruits which were sold at high prices. Economically, up to a 103% increase of output-input ratio had been achieved in the OM. Our

Biodiversity management of organic orchard enhances both ecological and economic profitability

Directory of Open Access Journals (Sweden)

Jie Meng

2016-06-01

Full Text Available Organic farming has been regarded as an alternative solution for both agricultural sustainability and human health maintenance. Few researches have concentrated on the differences of biodiversity and eco-economic benefits between organic and conventional orchards. Organic management (OM of orchards mainly includes taking advantage of natural enemies and beneficial weeds as well as soil organisms and controlling harmful pests. Here we conducted a three-year experiment on the effects of managing biodiversity in an organic apple orchard, using cattle manure to enrich soil biota, propagating native plant to suppress weeds and applying ecological pest management to control pests. The effect was assessed against the conventional management (CM model. We found that OM enhanced soil organic carbon, total nitrogen, microbial biomass carbon and nitrogen. The 16S rDNA high-throughput sequencing results indicated that the dominant bacterial phyla of the top soil were Proteobacteria and Actinobacteria, and OM had richer bacteria diversity with a 7% higher Shannon’s index than the CM. In particular, the relative abundance of rhizobium in the OM was higher than that of the CM. For OM, Duchesnea indica was an ideal ground-cover plant to control weeds through winning the niche competition and thus decreased weeds’ Simpson, Shannon–Wiener and Pielou index by 38.2%, 53.8% and 16.9% separately. The phototactic pests’ weight and scarab beetle’s population were effectively decreased by 35% and 86% respectively through long time control and prevention. OM had an average of 20 times more earthworms than CM, and the maximum density had reached 369 m−2 (0–20 cm soil. The dominant earthworm species of the OM were detritivores which preferring soil with high organic matter content. Due to no synthetic chemicals being used, the OM produced much safer apple fruits which were sold at high prices. Economically, up to a 103% increase of output–input ratio had

Policy development for environmental licensing and biodiversity offsets in Latin America.

Directory of Open Access Journals (Sweden)

Ana Villarroya

Full Text Available Attempts to meet biodiversity goals through application of the mitigation hierarchy have gained wide traction globally with increased development of public policy, lending standards, and corporate practices. With interest in biodiversity offsets increasing in Latin America, we seek to strengthen the basis for policy development through a review of major environmental licensing policy frameworks in Argentina, Brazil, Chile, Colombia, Mexico, Peru and Venezuela. Here we focused our review on an examination of national level policies to evaluate to which degree current provisions promote positive environmental outcomes. All the surveyed countries have national-level Environmental Impact Assessment laws or regulations that cover the habitats present in their territories. Although most countries enable the use of offsets only Brazil, Colombia, Mexico and Peru explicitly require their implementation. Our review has shown that while advancing quite detailed offset policies, most countries do not seem to have strong requirements regarding impact avoidance. Despite this deficiency most countries have a strong foundation from which to develop policy for biodiversity offsets, but several issues require further guidance, including how best to: (1 ensure conformance with the mitigation hierarchy; (2 identify the most environmentally preferable offsets within a landscape context; (3 determine appropriate mitigation replacement ratios; and (4 ensure appropriate time and effort is given to monitor offset performance.

Policy development for environmental licensing and biodiversity offsets in Latin America.

Science.gov (United States)

Villarroya, Ana; Barros, Ana Cristina; Kiesecker, Joseph

2014-01-01

Attempts to meet biodiversity goals through application of the mitigation hierarchy have gained wide traction globally with increased development of public policy, lending standards, and corporate practices. With interest in biodiversity offsets increasing in Latin America, we seek to strengthen the basis for policy development through a review of major environmental licensing policy frameworks in Argentina, Brazil, Chile, Colombia, Mexico, Peru and Venezuela. Here we focused our review on an examination of national level policies to evaluate to which degree current provisions promote positive environmental outcomes. All the surveyed countries have national-level Environmental Impact Assessment laws or regulations that cover the habitats present in their territories. Although most countries enable the use of offsets only Brazil, Colombia, Mexico and Peru explicitly require their implementation. Our review has shown that while advancing quite detailed offset policies, most countries do not seem to have strong requirements regarding impact avoidance. Despite this deficiency most countries have a strong foundation from which to develop policy for biodiversity offsets, but several issues require further guidance, including how best to: (1) ensure conformance with the mitigation hierarchy; (2) identify the most environmentally preferable offsets within a landscape context; (3) determine appropriate mitigation replacement ratios; and (4) ensure appropriate time and effort is given to monitor offset performance.

Energy mitigation, adaptation and biodiversity: Synergies and antagonisms

International Nuclear Information System (INIS)

Berry, P M; Paterson, J S

2009-01-01

In this paper we review the current impacts of different energy producers (and energy conservation) on biodiversity and investigate the potential for achieving positive biodiversity effects along with mitigation and adaptation objectives. Very few energy producers achieve all three aims - although it may be possible with careful choice of location and management. In some instances, energy conservation can provide mitigation, adaptation and biodiversity benefits. There is still a gap in knowledge regarding the effects of newer energy technologies on biodiversity. There is an additional concern that many supposedly 'green' renewable energy projects may actually harm biodiversity to such a degree that their overall human benefits are negated. The increasing understanding that ecosystem services are vital for human well-being though means that attempting positive mitigation, adaptation and biodiversity conservation in the energy sector should be an imperative goal for international policy. Whilst research into synergies between mitigation and adaptation is established, there has been very little that has examined the impacts on biodiversity as well. Further work is required to identify and provide evidence of the best ways of optimising mitigation, adaptation and biodiversity in the energy sector.

Mainstreaming biodiversity: conservation for the 21st century

Directory of Open Access Journals (Sweden)

Kent Hubbard Redford

2015-12-01

Full Text Available Insufficient focused attention has been paid by the conservation community to conservation of biodiversity outside of protected areas. Biodiversity mainstreaming addresses this gap in global conservation practice by embedding biodiversity considerations into policies, strategies and practices of key public and private actors that impact or rely on biodiversity, so that it is conserved, and sustainably used, both locally and globally (Huntley and Redford 2014. Biodiversity mainstreaming is designed to change those policies and practices that influence land uses outside of protected areas as well as to change economic and development decision-making by demonstrating the importance of conserving biodiversity for achieving development outcomes. The practice of mainstreaming is tied to implementation of the Convention on Biological Diversity and is practiced with billions of dollars of investment by development agencies, national government agencies, and the Global Environment Facility (GEF and its implementing organizations as well as other donors. It is essential for the long-term survival of biodiversity inside and outside protected areas. However, it is virtually unheard of in the main conservation science field. This must change so as to bring careful documentation, analysis, monitoring, publishing and improvement of practices – all things that conservation science should provide as partners to practitioners of biodiversity mainstreaming. The situation is ripe for informed coordination and consolidation and creation of a science-driven field of biodiversity mainstreaming.

Ecology and evolution of mammalian biodiversity.

Science.gov (United States)

Jones, Kate E; Safi, Kamran

2011-09-12

Mammals have incredible biological diversity, showing extreme flexibility in eco-morphology, physiology, life history and behaviour across their evolutionary history. Undoubtedly, mammals play an important role in ecosystems by providing essential services such as regulating insect populations, seed dispersal and pollination and act as indicators of general ecosystem health. However, the macroecological and macroevolutionary processes underpinning past and present biodiversity patterns are only beginning to be explored on a global scale. It is also particularly important, in the face of the global extinction crisis, to understand these processes in order to be able to use this knowledge to prevent future biodiversity loss and loss of ecosystem services. Unfortunately, efforts to understand mammalian biodiversity have been hampered by a lack of data. New data compilations on current species' distributions, ecologies and evolutionary histories now allow an integrated approach to understand this biodiversity. We review and synthesize these new studies, exploring the past and present ecology and evolution of mammalian biodiversity, and use these findings to speculate about the mammals of our future.

Ecology and evolution of mammalian biodiversity

Science.gov (United States)

Jones, Kate E.; Safi, Kamran

2011-01-01

Mammals have incredible biological diversity, showing extreme flexibility in eco-morphology, physiology, life history and behaviour across their evolutionary history. Undoubtedly, mammals play an important role in ecosystems by providing essential services such as regulating insect populations, seed dispersal and pollination and act as indicators of general ecosystem health. However, the macroecological and macroevolutionary processes underpinning past and present biodiversity patterns are only beginning to be explored on a global scale. It is also particularly important, in the face of the global extinction crisis, to understand these processes in order to be able to use this knowledge to prevent future biodiversity loss and loss of ecosystem services. Unfortunately, efforts to understand mammalian biodiversity have been hampered by a lack of data. New data compilations on current species' distributions, ecologies and evolutionary histories now allow an integrated approach to understand this biodiversity. We review and synthesize these new studies, exploring the past and present ecology and evolution of mammalian biodiversity, and use these findings to speculate about the mammals of our future. PMID:21807728

Connecting Earth observation to high-throughput biodiversity data

DEFF Research Database (Denmark)

Bush, Alex; Sollmann, Rahel; Wilting, Andreas

2017-01-01

Understandably, given the fast pace of biodiversity loss, there is much interest in using Earth observation technology to track biodiversity, ecosystem functions and ecosystem services. However, because most biodiversity is invisible to Earth observation, indicators based on Earth observation could...... observation data. This approach is achievable now, offering efficient and near-real-time monitoring of management impacts on biodiversity and its functions and services....

Building capacity in biodiversity monitoring at the global scale

Science.gov (United States)

Schmeller, Dirk S.; Bohm, Monika; Arvanitidis, Christos; Barber-Meyer, Shannon; Brummitt, Neil; Chandler, Mark; Chatzinikolaou, Eva; Costello, Mark J.; Ding, Hui; García-Moreno, Jaime; Gill, Michael J.; Haase, Peter; Jones, Miranda; Juillard, Romain; Magnusson, William E.; Martin, Corinne S.; McGeoch, Melodie A.; Mihoub, Jean-Baptiste; Pettorelli, Nathalie; Proença, Vânia; Peng, Cui; Regan, Eugenie; Schmiedel, Ute; Simsika, John P.; Weatherdon, Lauren; Waterman, Carly; Xu, Haigen; Belnap, Jayne

2017-01-01

Human-driven global change is causing ongoing declines in biodiversity worldwide. In order to address these declines, decision-makers need accurate assessments of the status of and pressures on biodiversity. However, these are heavily constrained by incomplete and uneven spatial, temporal and taxonomic coverage. For instance, data from regions such as Europe and North America are currently used overwhelmingly for large-scale biodiversity assessments due to lesser availability of suitable data from other, more biodiversity-rich, regions. These data-poor regions are often those experiencing the strongest threats to biodiversity, however. There is therefore an urgent need to fill the existing gaps in global biodiversity monitoring. Here, we review current knowledge on best practice in capacity building for biodiversity monitoring and provide an overview of existing means to improve biodiversity data collection considering the different types of biodiversity monitoring data. Our review comprises insights from work in Africa, South America, Polar Regions and Europe; in government-funded, volunteer and citizen-based monitoring in terrestrial, freshwater and marine ecosystems. The key steps to effectively building capacity in biodiversity monitoring are: identifying monitoring questions and aims; identifying the key components, functions, and processes to monitor; identifying the most suitable monitoring methods for these elements, carrying out monitoring activities; managing the resultant data; and interpreting monitoring data. Additionally, biodiversity monitoring should use multiple approaches including extensive and intensive monitoring through volunteers and professional scientists but also harnessing new technologies. Finally, we call on the scientific community to share biodiversity monitoring data, knowledge and tools to ensure the accessibility, interoperability, and reporting of biodiversity data at a global scale.

Toward equality of biodiversity knowledge through technology transfer.

Science.gov (United States)

Böhm, Monika; Collen, Ben

2015-10-01

To help stem the continuing decline of biodiversity, effective transfer of technology from resource-rich to biodiversity-rich countries is required. Biodiversity technology as defined by the Convention on Biological Diversity (CBD) is a complex term, encompassing a wide variety of activities and interest groups. As yet, there is no robust framework by which to monitor the extent to which technology transfer might benefit biodiversity. We devised a definition of biodiversity technology and a framework for the monitoring of technology transfer between CBD signatories. Biodiversity technology within the scope of the CBD encompasses hard and soft technologies that are relevant to the conservation and sustainable use of biodiversity, or make use of genetic resources, and that relate to all aspects of the CBD, with a particular focus on technology transfer from resource-rich to biodiversity-rich countries. Our proposed framework introduces technology transfer as a response indicator: technology transfer is increased to stem pressures on biodiversity. We suggest an initial approach of tracking technology flow between countries; charting this flow is likely to be a one-to-many relationship (i.e., the flow of a specific technology from one country to multiple countries). Future developments should then focus on integrating biodiversity technology transfer into the current pressure-state-response indicator framework favored by the CBD (i.e., measuring the influence of technology transfer on changes in state and pressure variables). Structured national reporting is important to obtaining metrics relevant to technology and knowledge transfer. Interim measures, that can be used to assess biodiversity technology or knowledge status while more in-depth indicators are being developed, include the number of species inventories, threatened species lists, or national red lists; databases on publications and project funding may provide measures of international cooperation. Such a

Exploring fungal biodiversity for the production of water-soluble pigments as potential natural food colorants

DEFF Research Database (Denmark)

Mapari, Sameer Shamsuddin; Nielsen, Kristian Fog; Larsen, Thomas Ostenfeld

2005-01-01

The production of many currently authorized natural food colorants has a number of disadvantages, including a dependence on the supply of raw materials and variations in pigment extraction. Fungi provide a readily available alternative source of naturally derived food colorants that could easily...... be produced in high yields. The recent authorization of a fungal food colorant has fuelled research to explore the extraordinary chemical diversity and biodiversity of fungi for the biotechnological production of pigments as natural food colorants. These studies require an appropriate use of chernotaxonomic...... technology, in the future it should be possible to employ metabolic engineering to create microbial cell factories for the production of food colorants....

Backyard Biodiversity.

Science.gov (United States)

Thompson, Sarah S.

2002-01-01

Describes a field trip experience for the Earth Odyssey project for elementary school students focusing on biodiversity. Introduces the concept of diversity, field work, species richness, and the connection between animals and their habitat. (YDS)

Teaching Biodiversity

Indian Academy of Sciences (India)

Author Affiliations. Madhav Gadgil1 2. Centre for Ecological Sciences, Indian Institute of Science, Bangalore 560 012, India. Biodiversity Unit, Jowaharlal Nehru Centre for Advanced Scientific Research, Jakkur P.O. Jakkur, Bangalore 560064, India ...

Biodiversity enhances ecosystem multifunctionality across trophic levels and habitats

Science.gov (United States)

Lefcheck, Jonathan S.; Byrnes, Jarrett E. K.; Isbell, Forest; Gamfeldt, Lars; Griffin, John N.; Eisenhauer, Nico; Hensel, Marc J. S.; Hector, Andy; Cardinale, Bradley J.; Duffy, J. Emmett

2015-01-01

The importance of biodiversity for the integrated functioning of ecosystems remains unclear because most evidence comes from analyses of biodiversity's effect on individual functions. Here we show that the effects of biodiversity on ecosystem function become more important as more functions are considered. We present the first systematic investigation of biodiversity's effect on ecosystem multifunctionality across multiple taxa, trophic levels and habitats using a comprehensive database of 94 manipulations of species richness. We show that species-rich communities maintained multiple functions at higher levels than depauperate ones. These effects were stronger for herbivore biodiversity than for plant biodiversity, and were remarkably consistent across aquatic and terrestrial habitats. Despite observed tradeoffs, the overall effect of biodiversity on multifunctionality grew stronger as more functions were considered. These results indicate that prior research has underestimated the importance of biodiversity for ecosystem functioning by focusing on individual functions and taxonomic groups. PMID:25907115

Habitat modeling for biodiversity conservation.

Science.gov (United States)

Bruce G. Marcot

2006-01-01

Habitat models address only 1 component of biodiversity but can be useful in addressing and managing single or multiple species and ecosystem functions, for projecting disturbance regimes, and in supporting decisions. I review categories and examples of habitat models, their utility for biodiversity conservation, and their roles in making conservation decisions. I...

Shifts of microbial communities of wheat (Triticum aestivum L.) cultivation in a closed artificial ecosystem.

Science.gov (United States)

Qin, Youcai; Fu, Yuming; Dong, Chen; Jia, Nannan; Liu, Hong

2016-05-01

The microbial communities of plant ecosystems are in relation to plant growing environment, but the alteration in biodiversity of rhizosphere and phyllosphere microbial communities in closed and controlled environments is unknown. The purpose of this study is to analyze the change regularity of microbial communities with wheat plants dependent-cultivated in a closed artificial ecosystem. The microbial community structures in closed-environment treatment plants were investigated by a culture-dependent approach, polymerase chain reaction-denaturing gradient gel electrophoresis (PCR-DGGE), and Illumina Miseq high-throughput sequencing. The results indicated that the number of microbes decreased along with time, and the magnitude of bacteria, fungi, and actinomycetes were 10(7)-10(8), 10(5), and 10(3)-10(4) CFU/g (dry weight), respectively. The analysis of PCR-DGGE and Illumina Miseq revealed that the wheat leaf surface and near-root substrate had different microbial communities at different periods of wheat ecosystem development and showed that the relative highest diversity of microbial communities appeared at late and middle periods of the plant ecosystem, respectively. The results also indicated that the wheat leaf and substrate had different microbial community compositions, and the wheat substrate had higher richness of microbial community than the leaf. Flavobacterium, Pseudomonas, Paenibacillus, Enterobacter, Penicillium, Rhodotorula, Acremonium, and Alternaria were dominant in the wheat leaf samples, and Pedobacter, Flavobacterium, Halomonas, Marinobacter, Salinimicrobium, Lysobacter, Pseudomonas, Halobacillus, Xanthomonas, Acremonium, Monographella, and Penicillium were dominant populations in the wheat near-root substrate samples.

Stay connected: Electrical conductivity of microbial aggregates.

Science.gov (United States)

Li, Cheng; Lesnik, Keaton Larson; Liu, Hong

2017-11-01

The discovery of direct extracellular electron transfer offers an alternative to the traditional understanding of diffusional electron exchange via small molecules. The establishment of electronic connections between electron donors and acceptors in microbial communities is critical to electron transfer via electrical currents. These connections are facilitated through conductivity associated with various microbial aggregates. However, examination of conductivity in microbial samples is still in its relative infancy and conceptual models in terms of conductive mechanisms are still being developed and debated. The present review summarizes the fundamental understanding of electrical conductivity in microbial aggregates (e.g. biofilms, granules, consortia, and multicellular filaments) highlighting recent findings and key discoveries. A greater understanding of electrical conductivity in microbial aggregates could facilitate the survey for additional microbial communities that rely on direct extracellular electron transfer for survival, inform rational design towards the aggregates-based production of bioenergy/bioproducts, and inspire the construction of new synthetic conductive polymers. Copyright © 2017 Elsevier Inc. All rights reserved.

Biodiversity, climate change and poverty: exploring the links

Energy Technology Data Exchange (ETDEWEB)

Reid, Hannah; Swiderska, Krystyna

2008-02-15

Biodiversity — the variety of all life, from genes and species to ecosystems — is intimately linked to Earth's climate and, inevitably, to climate change. Biodiversity and poverty are also inextricably connected. For instance, changes to natural ecosystems influence both climate change and people's ability to cope with some of its damaging impacts. And in their turn climate change, as well as people's responses to it, affect biodiversity. Unpicking all these strands clearly shows that conserving and managing biodiversity can help natural systems and vulnerable people cope with a shifting global climate. Yet compared to activities such as forest conservation and afforestation — widely noted as a way of sequestering carbon and cutting greenhouse gas emissions — biodiversity conservation is a neglected area. That must change: urgent support is needed for local solutions to biodiversity loss that provide benefits on all counts.

Scenarios for future biodiversity loss due to multiple drivers reveal conflict between mitigating climate change and preserving biodiversity

International Nuclear Information System (INIS)

Powell, Thomas W R; Lenton, Timothy M

2013-01-01

We assess the potential for future biodiversity loss due to three interacting factors: energy withdrawal from ecosystems due to biomass harvest, habitat loss due to land-use change, and climate change. We develop four scenarios to 2050 with different combinations of high or low agricultural efficiency and high or low meat diets, and use species–energy and species–area relationships to estimate their effects on biodiversity. In our scenarios, natural ecosystems are protected except when additional land is necessary to fulfil the increasing dietary demands of the global population. Biomass energy with carbon capture and storage (BECCS) is used as a means of carbon dioxide removal (CDR) from the atmosphere (and offsetting fossil fuel emissions). BECCS is based on waste biomass, with the addition of bio-energy crops only when already managed land is no longer needed for food production. Forecast biodiversity loss from natural biomes increases by more than a factor of five in going from high to low agricultural efficiency scenarios, due to destruction of productive habitats by the expansion of pasture. Biodiversity loss from energy withdrawal on managed land varies by a factor of two across the scenarios. Biodiversity loss due to climate change varies only modestly across the scenarios. Climate change is lowest in the ‘low meat high efficiency’ scenario, in which by 2050 around 660 million hectares of pasture are converted to biomass plantation that is used for BECCS. However, the resulting withdrawal of energy from managed ecosystems has a large negative impact on biodiversity. Although the effects of energy withdrawal and climate change on biodiversity cannot be directly compared, this suggests that using bio-energy to tackle climate change in order to limit biodiversity loss could instead have the opposite effect. (letter)

The EuroDIVERSITY Programme: Challenges of Biodiversity Science in Europe

Science.gov (United States)

Jonckheere, I.

2009-04-01

, multidisciplinary collaborative research projects, which are expected to contribute to this goal by initiating or strengthening major collaborative research efforts. Some projects are dealing primarily with microbial diversity (COMIX, METHECO, MiCROSYSTEMS), others try to investigate the biogeochemistry in grassland and forest ecosystems (BEGIN, BioCycle), the landscape and community ecology of biodiversity changes (ASSEMBLE, AGRIPOPES, EcoTRADE), and others focus on the diversity in freshwater (BIOPOOL, MOLARCH). In 2009, the EuroDIVERSITY Programme will integrate the different European research teams involved with collaborative field work campaigns over Europe, international workshops and conferences, as well as joint peer-review publications. For more information about the Programme and its activities, please check the Programme website: www.esf.org/eurodiversity

Strong linkage between active microbial communities and microbial carbon usage in a deglaciated terrain of the High Arctic

Science.gov (United States)

Kim, M.; Gyeong, H. R.; Lee, Y. K.

2017-12-01

Soil microorganisms play pivotal roles in ecosystem development and carbon cycling in newly exposed glacier forelands. However, little is known about carbon utilization pattern by metabolically active microbes over the course of ecosystem succession in these nutrient-poor environments. We investigated RNA-based microbial community dynamics and its relation to microbial carbon usage along the chronosequence of a High Arctic glacier foreland. Among microbial taxa surveyed (bacteria, archaea and fungi), bacteria are among the most metabolically active taxa with a dominance of Cyanobacteria and Actinobacteria. There was a strong association between microbial carbon usage and active Actinobacterial communities, suggesting that member of Actinobacteria are actively involved in organic carbon degradation in glacier forelands. Both bacterial community and microbial carbon usage are converged towards later stage of succession, indicating that the composition of soil organic carbon plays important roles in structuring bacterial decomposer communities during ecosystem development.

Biodiversity hot spot on a hot spot: novel extremophile diversity in Hawaiian fumaroles.

Science.gov (United States)

Wall, Kate; Cornell, Jennifer; Bizzoco, Richard W; Kelley, Scott T

2015-01-06

Fumaroles (steam vents) are the most common, yet least understood, microbial habitat in terrestrial geothermal settings. Long believed too extreme for life, recent advances in sample collection and DNA extraction methods have found that fumarole deposits and subsurface waters harbor a considerable diversity of viable microbes. In this study, we applied culture-independent molecular methods to explore fumarole deposit microbial assemblages in 15 different fumaroles in four geographic locations on the Big Island of Hawai'i. Just over half of the vents yielded sufficient high-quality DNA for the construction of 16S ribosomal RNA gene sequence clone libraries. The bacterial clone libraries contained sequences belonging to 11 recognized bacterial divisions and seven other division-level phylogenetic groups. Archaeal sequences were less numerous, but similarly diverse. The taxonomic composition among fumarole deposits was highly heterogeneous. Phylogenetic analysis found cloned fumarole sequences were related to microbes identified from a broad array of globally distributed ecotypes, including hot springs, terrestrial soils, and industrial waste sites. Our results suggest that fumarole deposits function as an "extremophile collector" and may be a hot spot of novel extremophile biodiversity. © 2015 The Authors. MicrobiologyOpen published by John Wiley & Sons Ltd.

Microbial Community Patterns Associated with Automated Teller Machine Keypads in New York City.

Science.gov (United States)

Bik, Holly M; Maritz, Julia M; Luong, Albert; Shin, Hakdong; Dominguez-Bello, Maria Gloria; Carlton, Jane M

2016-01-01

In densely populated urban environments, the distribution of microbes and the drivers of microbial community assemblages are not well understood. In sprawling metropolitan habitats, the "urban microbiome" may represent a mix of human-associated and environmental taxa. Here we carried out a baseline study of automated teller machine (ATM) keypads in New York City (NYC). Our goal was to describe the biodiversity and biogeography of both prokaryotic and eukaryotic microbes in an urban setting while assessing the potential source of microbial assemblages on ATM keypads. Microbial swab samples were collected from three boroughs (Manhattan, Queens, and Brooklyn) during June and July 2014, followed by generation of Illumina MiSeq datasets for bacterial (16S rRNA) and eukaryotic (18S rRNA) marker genes. Downstream analysis was carried out in the QIIME pipeline, in conjunction with neighborhood metadata (ethnicity, population, age groups) from the NYC Open Data portal. Neither the 16S nor 18S rRNA datasets showed any clustering patterns related to geography or neighborhood demographics. Bacterial assemblages on ATM keypads were dominated by taxonomic groups known to be associated with human skin communities ( Actinobacteria , Bacteroides , Firmicutes , and Proteobacteria ), although SourceTracker analysis was unable to identify the source habitat for the majority of taxa. Eukaryotic assemblages were dominated by fungal taxa as well as by a low-diversity protist community containing both free-living and potentially pathogenic taxa ( Toxoplasma , Trichomonas ). Our results suggest that ATM keypads amalgamate microbial assemblages from different sources, including the human microbiome, eukaryotic food species, and potentially novel extremophilic taxa adapted to air or surfaces in the built environment. DNA obtained from ATM keypads may thus provide a record of both human behavior and environmental sources of microbes. IMPORTANCE Automated teller machine (ATM) keypads represent

Student Teachers' Understanding of the Terminology, Distribution, and Loss of Biodiversity: Perspectives from a Biodiversity Hotspot and an Industrialized Country

Science.gov (United States)

Fiebelkorn, Florian; Menzel, Susanne

2013-01-01

The loss of biodiversity is one of the most urgent global environmental problems of our time. Public education and awareness building is key to successful biodiversity protection. Knowledgeable and skilled student teachers are a key component for the successful implementation of biodiversity education in schools. Yet, little empirical evidence…

Identification of Appropriate Biodiversity Indicators for Ecologically Sustainable Forest Management at National Level

International Nuclear Information System (INIS)

Tolunay, A.; Akyol, A.

2015-01-01

Sustainable forest management (SFM) practices have started in 1999 in Turkey. A set of criteria and indicators, composed by the General Directorate of Forestry (GDF) on the basis of the criteria and indicators defined in the Pan-European and Near Eastern Processes, was enquired via a survey to serve this purpose. GDF tested the sustainability under the following titles: Situation of forest resources, biodiversity, health and vitality, production capacity and functions, protective functions and environmental and socio-economic functions. There were problems in identification and definition of SFM criteria and indicators. Biological diversity indicators has been selected, described and developed in this study. At this phase, the survey was completed upon receiving the views of the scientists interested in different dimensions of this topic as well as the views of other interest groups affiliated with forestry. As a result, there were 13 indicators that may be used as the basis of a regional or forest management unit level for the purpose of protecting, developing and maintaining biodiversity. Furthermore, these indicators are instruments, which may easily be used by relevant decision-makers in the management of forest resources in a more effective and productive manner. (author)

Molecular biodiversity of Red Sea demosponges

International Nuclear Information System (INIS)

Erpenbeck, Dirk; Voigt, Oliver; Al-Aidaroos, Ali M.; Berumen, Michael L.; Büttner, Gabriele; Catania, Daniela; Guirguis, Adel Naguib; Paulay, Gustav; Schätzle, Simone

2016-01-01

Sponges are important constituents of coral reef ecosystems, including those around the Arabian Peninsula. Despite their importance, our knowledge on demosponge diversity in this area is insufficient to recognize, for example, faunal changes caused by anthropogenic disturbances. We here report the first assessment of demosponge molecular biodiversity from Arabia, with focus on the Saudi Arabian Red Sea, based on mitochondrial and nuclear ribosomal molecular markers gathered in the framework of the Sponge Barcoding Project. We use a rapid molecular screening approach on Arabian demosponge collections and analyze results in comparison against published material in terms of biodiversity. We use a variable region of 28S rDNA, applied for the first time in the assessment of demosponge molecular diversity. Our data constitutes a solid foundation for a future more comprehensive understanding of sponge biodiversity of the Red Sea and adjacent waters. - Highlights: •First assessment of demosponge molecular biodiversity from Arabia •Rapid molecular screening approach on Arabian demosponge collections •Assessment of 28S 'C-Region' for demosponge barcoding •Data for a future comprehensive understanding of sponge biodiversity of the Red Sea

Online Biodiversity Resources - Principles for Usability

Directory of Open Access Journals (Sweden)

Sophie Neale

2007-01-01

Full Text Available Online biodiversity portals and databases enabling access to large volumes of biological information represent a potentially extensive set of resources for a variety of user groups. However, in order for these resources to live up to their promise they need to be both useful and easy to use. We discuss a number of principles for designing systems for usability, examine how these have been applied to the development of online biodiversity resources and compare this with a portal project developed by the Astrophysics community. We highlight a lack of user involvement and formalised requirements analysis by biodiversity projects resulting in a poor understanding of both the users and their tasks. We suggest a change in the way large biodiversity portal projects are structured, that is by providing infrastructure and supporting user groups developing individual interfaces.

Towards an operational definition of Essential Biodiversity Variables

NARCIS (Netherlands)

Schmeller, D.S.; Mihoub, J.-B.; Bowser, A.; Arvanitidis, C.; Costello, M.J.; Fernandez, M.; Geller, G.N.; Hobern, D.; Kissling, W.D.; Regan, E.; Saarenmaa, H.; Turak, E.; Isaac, N.J.B.

2017-01-01

The concept of essential biodiversity variables (EBVs) was proposed in 2013 to improve harmonization of biodiversity data into meaningful metrics. EBVs were conceived as a small set of variables which collectively capture biodiversity change at multiple spatial scales and within time intervals that

Economic tools for biodiversity. An elaboration of TEEB recommendations with regard to the Taskforce Biodiversity

International Nuclear Information System (INIS)

Davidson, M.D.; Bergsma, G.C.; Blom, M.J.

2011-07-01

The working group on Economic Instruments of the Biodiversity and Natural Resources Task Force addressed the question how the recommendations of the report of the United Nations 'The Economics of Ecosystems and Biodiversity' (TEEB) can be realized in the Netherlands. A selection of topics has been made for which policy proposals are developed which might be promising and can lead to a better protection of the biodiversity. The following proposals were investigated and/or elaborated: decrease of the social discount rate; further greening of the tax system; import levy on bulk commodities; taxes on non-sustainable wood; levy on the use of open space; differential tax on animal proteins; and a revision of biomass incentives. [nl

Biodiversity, climate change and poverty: exploring the links

Energy Technology Data Exchange (ETDEWEB)

Reid, Hannah; Swiderska, Krystyna

2008-02-15

Biodiversity — the variety of all life, from genes and species to ecosystems — is intimately linked to Earth's climate and, inevitably, to climate change. Biodiversity and poverty are also inextricably connected. For instance, changes to natural ecosystems influence both climate change and people's ability to cope with some of its damaging impacts. And in their turn climate change, as well as people's responses to it, affect biodiversity. Unpicking all these strands clearly shows that conserving and managing biodiversity can help natural systems and vulnerable people cope with a shifting global climate. Yet compared to activities such as forest conservation and afforestation — widely noted as a way of sequestering carbon and cutting greenhouse gas emissions — biodiversity conservation is a neglected area. That must change: urgent support is needed for local solutions to biodiversity loss that provide benefits on all counts.

Maximizing biodiversity co-benefits under REDD+: a decoupled approach

International Nuclear Information System (INIS)

Potts, Matthew D; Kelley, Lisa C; Doll, Hannah M

2013-01-01

Current debates on biodiversity co-benefits under REDD+ are marked by considerable ambiguity and contention. Nevertheless, REDD+ continues to represent one of the most important opportunities for global biodiversity conservation, and the question of how best to achieve biodiversity co-benefits remains an important one. Thus far, most biodiversity conservation in the context of REDD+ is predicated on the notion that services are co-located on a landscape. In contrast, this letter argues that decoupling biodiversity and carbon services on a landscape through national-level planning is a better approach to biodiversity conservation under REDD+. We discuss the fundamental ecological differences between the two services and use principles of resource economics to demonstrate that a decoupled approach will be more efficient, more flexible, and better able to mobilize sufficient finance for biodiversity conservation than a coupled approach. (letter)

Maximizing biodiversity co-benefits under REDD+: a decoupled approach

Science.gov (United States)

Potts, Matthew D.; Kelley, Lisa C.; Doll, Hannah M.

2013-06-01

Current debates on biodiversity co-benefits under REDD+ are marked by considerable ambiguity and contention. Nevertheless, REDD+ continues to represent one of the most important opportunities for global biodiversity conservation, and the question of how best to achieve biodiversity co-benefits remains an important one. Thus far, most biodiversity conservation in the context of REDD+ is predicated on the notion that services are co-located on a landscape. In contrast, this letter argues that decoupling biodiversity and carbon services on a landscape through national-level planning is a better approach to biodiversity conservation under REDD+. We discuss the fundamental ecological differences between the two services and use principles of resource economics to demonstrate that a decoupled approach will be more efficient, more flexible, and better able to mobilize sufficient finance for biodiversity conservation than a coupled approach.

Operational Research Techniques Used for Addressing Biodiversity Objectives into Forest Management: An Overview

Directory of Open Access Journals (Sweden)

Marta Ezquerro

2016-10-01

Full Text Available The integration of biodiversity into forest management has traditionally been a challenge for many researchers and practitioners. In this paper, we have provided a survey of forest management papers that use different Operations Research (OR methods in order to integrate biodiversity objectives into their planning models. One hundred and seventy-nine references appearing in the ISI Web of Science database in the last 30 years have been categorized and evaluated according to different attributes like model components, forest management elements, or biodiversity issues. The results show that many OR methods have been applied to deal with this challenging objective. Thus, up to 18 OR techniques, divided into four large groups, which have been employed in four or more articles, have been identified. However, it has been observed how the evolution of these papers in time apparently tended to increase only until 2008. Finally, two clear trends in this set of papers should be highlighted: the incorporation of spatial analysis tools into these operational research models and, second, the setting up of hybrid models, which combine different techniques to solve this type of problem.

The effect of buffer zone width on biodiversity

DEFF Research Database (Denmark)

Navntoft, Søren; Sigsgaard, Lene; Kristensen, Kristian Morten

2012-01-01

Field margin management for conservation purposes is a way to protect both functional biodiversity and biodiversity per se without considerable economical loss as field margins are less productive. However, the effect of width of the buffer zone on achievable biodiversity gains has received littl...

Marine biodiversity in Colombia

International Nuclear Information System (INIS)

Diaz, Juan Manuel

2002-01-01

One decade ago, the seas and oceans were considered biologically less diverse that the terrestrial environment. Now it is known that it is on the contrary; 33 of the 34 categories of animals (phylum), they are represented in the sea, compared with those solely 15 that exist in earth. The investigation about the diversity of life in the sea has been relatively scorned, but there are big benefits that we can wait if this is protected. The captures of fish depend on it; the species captured by the fisheries are sustained of the biodiversity of their trophic chains and habitats. The marine species are probably the biggest reservoir of chemical substances that can be used in pharmaceutical products. The genetic material of some species can be useful in biotechnical applications. The paper treats topics like the current state of the knowledge in marine biodiversity and it is done a diagnostic of the marine biodiversity in Colombia

CANGS: a user-friendly utility for processing and analyzing 454 GS-FLX data in biodiversity studies

Directory of Open Access Journals (Sweden)

Schlötterer Christian

2010-01-01

Full Text Available Abstract Background Next generation sequencing (NGS technologies have substantially increased the sequence output while the costs were dramatically reduced. In addition to the use in whole genome sequencing, the 454 GS-FLX platform is becoming a widely used tool for biodiversity surveys based on amplicon sequencing. In order to use NGS for biodiversity surveys, software tools are required, which perform quality control, trimming of the sequence reads, removal of PCR primers, and generation of input files for downstream analyses. A user-friendly software utility that carries out these steps is still lacking. Findings We developed CANGS (Cleaning and Analyzing Next Generation Sequences a flexible and user-friendly integrated software utility: CANGS is designed for amplicon based biodiversity surveys using the 454 sequencing platform. CANGS filters low quality sequences, removes PCR primers, filters singletons, identifies barcodes, and generates input files for downstream analyses. The downstream analyses rely either on third party software (e.g.: rarefaction analyses or CANGS-specific scripts. The latter include modules linking 454 sequences with the name of the closest taxonomic reference retrieved from the NCBI database and the sequence divergence between them. Our software can be easily adapted to handle sequencing projects with different amplicon sizes, primer sequences, and quality thresholds, which makes this software especially useful for non-bioinformaticians. Conclusion CANGS performs PCR primer clipping, filtering of low quality sequences, links sequences to NCBI taxonomy and provides input files for common rarefaction analysis software programs. CANGS is written in Perl and runs on Mac OS X/Linux and is available at http://i122server.vu-wien.ac.at/pop/software.html

Antarctica and the strategic plan for biodiversity

Science.gov (United States)

Chown, Steven L.; Brooks, Cassandra M.; Terauds, Aleks; Le Bohec, Céline; van Klaveren-Impagliazzo, Céline; Whittington, Jason D.; Butchart, Stuart H. M.; Coetzee, Bernard W. T.; Collen, Ben; Convey, Peter; Gaston, Kevin J.; Gilbert, Neil; Gill, Mike; Höft, Robert; Johnston, Sam; Kennicutt, Mahlon C.; Kriesell, Hannah J.; Le Maho, Yvon; Lynch, Heather J.; Palomares, Maria; Puig-Marcó, Roser; Stoett, Peter; McGeoch, Melodie A.

2017-01-01

The Strategic Plan for Biodiversity, adopted under the auspices of the Convention on Biological Diversity, provides the basis for taking effective action to curb biodiversity loss across the planet by 2020—an urgent imperative. Yet, Antarctica and the Southern Ocean, which encompass 10% of the planet’s surface, are excluded from assessments of progress against the Strategic Plan. The situation is a lost opportunity for biodiversity conservation globally. We provide such an assessment. Our evidence suggests, surprisingly, that for a region so remote and apparently pristine as the Antarctic, the biodiversity outlook is similar to that for the rest of the planet. Promisingly, however, much scope for remedial action exists. PMID:28350825

Antarctica and the strategic plan for biodiversity.

Directory of Open Access Journals (Sweden)

Steven L Chown

2017-03-01

Full Text Available The Strategic Plan for Biodiversity, adopted under the auspices of the Convention on Biological Diversity, provides the basis for taking effective action to curb biodiversity loss across the planet by 2020-an urgent imperative. Yet, Antarctica and the Southern Ocean, which encompass 10% of the planet's surface, are excluded from assessments of progress against the Strategic Plan. The situation is a lost opportunity for biodiversity conservation globally. We provide such an assessment. Our evidence suggests, surprisingly, that for a region so remote and apparently pristine as the Antarctic, the biodiversity outlook is similar to that for the rest of the planet. Promisingly, however, much scope for remedial action exists.

Persistence and vulnerability: retaining biodiversity in the landscape ...

Indian Academy of Sciences (India)

Unknown

An objective of biodiversity conservation activities is to minimize the exposure of biodiversity features to threatening processes and to ensure, as far as possible, that biodiversity persists in the landscape. We discuss how issues of vulnerability and persistence can and should be addressed at all stages of the conservation.

Impact of GM crops on biodiversity.

Science.gov (United States)

Carpenter, Janet E

2011-01-01

The potential impact of GM crops on biodiversity has been a topic of interest both in general as well as specifically in the context of the Convention on Biological Diversity. Agricultural biodiversity has been defined at levels from genes to ecosystems that are involved or impacted by agricultural production (www.cbd.int/agro/whatis.shtml). After fifteen years of commercial cultivation, a substantial body of literature now exists addressing the potential impacts of GM crops on the environment. This review takes a biodiversity lens to this literature, considering the impacts at three levels: the crop, farm and landscape scales. Within that framework, this review covers potential impacts of the introduction of genetically engineered crops on: crop diversity, biodiversity of wild relatives, non-target soil organisms, weeds, land use, non-target above-ground organisms, and area-wide pest suppression. The emphasis of the review is peer-reviewed literature that presents direct measures of impacts on biodiversity. In addition, possible impacts of changes in management practises such as tillage and pesticide use are also discussed to complement the literature on direct measures. The focus of the review is on technologies that have been commercialized somewhere in the world, while results may emanate from non-adopting countries and regions. Overall, the review finds that currently commercialized GM crops have reduced the impacts of agriculture on biodiversity, through enhanced adoption of conservation tillage practices, reduction of insecticide use and use of more environmentally benign herbicides and increasing yields to alleviate pressure to convert additional land into agricultural use.

Large conservation gains possible for global biodiversity facets.

Science.gov (United States)

Pollock, Laura J; Thuiller, Wilfried; Jetz, Walter

2017-06-01

Different facets of biodiversity other than species numbers are increasingly appreciated as critical for maintaining the function of ecosystems and their services to humans. While new international policy and assessment processes such as the Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services (IPBES) recognize the importance of an increasingly global, quantitative and comprehensive approach to biodiversity protection, most insights are still focused on a single facet of biodiversity-species. Here we broaden the focus and provide an evaluation of how much of the world's species, functional and phylogenetic diversity of birds and mammals is currently protected and the scope for improvement. We show that the large existing gaps in the coverage for each facet of diversity could be remedied by a slight expansion of protected areas: an additional 5% of the land has the potential to more than triple the protected range of species or phylogenetic or functional units. Further, the same areas are often priorities for multiple diversity facets and for both taxa. However, we find that the choice of conservation strategy has a fundamental effect on outcomes. It is more difficult (that is, requires more land) to maximize basic representation of the global biodiversity pool than to maximize local diversity. Overall, species and phylogenetic priorities are more similar to each other than they are to functional priorities, and priorities for the different bird biodiversity facets are more similar than those of mammals. Our work shows that large gains in biodiversity protection are possible, while also highlighting the need to explicitly link desired conservation objectives and biodiversity metrics. We provide a framework and quantitative tools to advance these goals for multi-faceted biodiversity conservation.

AMBON - the Arctic Marine Biodiversity Observing Network

Science.gov (United States)

Iken, K.; Danielson, S. L.; Grebmeier, J. M.; Cooper, L. W.; Hopcroft, R. R.; Kuletz, K.; Stafford, K.; Mueter, F. J.; Collins, E.; Bluhm, B.; Moore, S. E.; Bochenek, R. J.

2016-02-01

The goal of the Arctic Marine Biodiversity Observing Network (AMBON) is to build an operational and sustainable marine biodiversity observing network for the US Arctic Chukchi Sea continental shelf. The AMBON has four main goals: 1. To close current gaps in taxonomic biodiversity observations from microbes to whales, 2. To integrate results of past and ongoing research programs on the US Arctic shelf into a biodiversity observation network, 3. To demonstrate at a regional level how an observing network could be developed, and 4. To link with programs on the pan-Arctic to global scale. The AMBON fills taxonomic (from microbes to mammals), functional (food web structure), spatial and temporal (continuing time series) gaps, and includes new technologies such as state-of-the-art genomic tools, with biodiversity and environmental observations linked through central data management through the Alaska Ocean Observing System. AMBON is a 5-year partnership between university and federal researchers, funded through the National Ocean Partnership Program (NOPP), with partners in the National Oceanographic and Atmospheric Administration (NOAA), the Bureau of Ocean and Energy Management (BOEM), and Shell industry. AMBON will allow us to better coordinate, sustain, and synthesize biodiversity research efforts, and make data available to a broad audience of users, stakeholders, and resource managers.

Biodiversity and Tourism : Impacts and Interventions

NARCIS (Netherlands)

Duim, van der V.R.; Caalders, J.D.A.D.

2002-01-01

This paper sets a framework for intervention in the relationship between biodiversity and tourism against the background of the Convention on Biological Diversity. It is argued that intervention cannot and should not only be based on considerations of measurable impacts of tourism on biodiversity

PanFP: pangenome-based functional profiles for microbial communities.

Science.gov (United States)

Jun, Se-Ran; Robeson, Michael S; Hauser, Loren J; Schadt, Christopher W; Gorin, Andrey A

2015-09-26

For decades there has been increasing interest in understanding the relationships between microbial communities and ecosystem functions. Current DNA sequencing technologies allows for the exploration of microbial communities in two principle ways: targeted rRNA gene surveys and shotgun metagenomics. For large study designs, it is often still prohibitively expensive to sequence metagenomes at both the breadth and depth necessary to statistically capture the true functional diversity of a community. Although rRNA gene surveys provide no direct evidence of function, they do provide a reasonable estimation of microbial diversity, while being a very cost-effective way to screen samples of interest for later shotgun metagenomic analyses. However, there is a great deal of 16S rRNA gene survey data currently available from diverse environments, and thus a need for tools to infer functional composition of environmental samples based on 16S rRNA gene survey data. We present a computational method called pangenome-based functional profiles (PanFP), which infers functional profiles of microbial communities from 16S rRNA gene survey data for Bacteria and Archaea. PanFP is based on pangenome reconstruction of a 16S rRNA gene operational taxonomic unit (OTU) from known genes and genomes pooled from the OTU's taxonomic lineage. From this lineage, we derive an OTU functional profile by weighting a pangenome's functional profile with the OTUs abundance observed in a given sample. We validated our method by comparing PanFP to the functional profiles obtained from the direct shotgun metagenomic measurement of 65 diverse communities via Spearman correlation coefficients. These correlations improved with increasing sequencing depth, within the range of 0.8-0.9 for the most deeply sequenced Human Microbiome Project mock community samples. PanFP is very similar in performance to another recently released tool, PICRUSt, for almost all of survey data analysed here. But, our method is unique

Climate constrains the evolutionary history and biodiversity of crocodylians.

Science.gov (United States)

Mannion, Philip D; Benson, Roger B J; Carrano, Matthew T; Tennant, Jonathan P; Judd, Jack; Butler, Richard J

2015-09-24

The fossil record of crocodylians and their relatives (pseudosuchians) reveals a rich evolutionary history, prompting questions about causes of long-term decline to their present-day low biodiversity. We analyse climatic drivers of subsampled pseudosuchian biodiversity over their 250 million year history, using a comprehensive new data set. Biodiversity and environmental changes correlate strongly, with long-term decline of terrestrial taxa driven by decreasing temperatures in northern temperate regions, and biodiversity decreases at lower latitudes matching patterns of increasing aridification. However, there is no relationship between temperature and biodiversity for marine pseudosuchians, with sea-level change and post-extinction opportunism demonstrated to be more important drivers. A 'modern-type' latitudinal biodiversity gradient might have existed throughout pseudosuchian history, and range expansion towards the poles occurred during warm intervals. Although their fossil record suggests that current global warming might promote long-term increases in crocodylian biodiversity and geographic range, the 'balancing forces' of anthropogenic environmental degradation complicate future predictions.

Biodiversity information platforms: From standards to interoperability

Directory of Open Access Journals (Sweden)

Walter Berendsohn

2011-11-01

Full Text Available One of the most serious bottlenecks in the scientific workflows of biodiversity sciences is the need to integrate data from different sources, software applications, and services for analysis, visualisation and publication. For more than a quarter of a century the TDWG Biodiversity Information Standards organisation has a central role in defining and promoting data standards and protocols supporting interoperability between disparate and locally distributed systems. Although often not sufficiently recognized, TDWG standards are the foundation of many popular Biodiversity Informatics applications and infrastructures ranging from small desktop software solutions to large scale international data networks. However, individual scientists and groups of collaborating scientist have difficulties in fully exploiting the potential of standards that are often notoriously complex, lack non-technical documentations, and use different representations and underlying technologies. In the last few years, a series of initiatives such as Scratchpads, the EDIT Platform for Cybertaxonomy, and biowikifarm have started to implement and set up virtual work platforms for biodiversity sciences which shield their users from the complexity of the underlying standards. Apart from being practical work-horses for numerous working processes related to biodiversity sciences, they can be seen as information brokers mediating information between multiple data standards and protocols. The ViBRANT project will further strengthen the flexibility and power of virtual biodiversity working platforms by building software interfaces between them, thus facilitating essential information flows needed for comprehensive data exchange, data indexing, web-publication, and versioning. This work will make an important contribution to the shaping of an international, interoperable, and user-oriented biodiversity information infrastructure.

Soil biodiversity and soil community composition determine ecosystem multifunctionality

Science.gov (United States)

Wagg, Cameron; Bender, S. Franz; Widmer, Franco; van der Heijden, Marcel G. A.

2014-01-01

Biodiversity loss has become a global concern as evidence accumulates that it will negatively affect ecosystem services on which society depends. So far, most studies have focused on the ecological consequences of above-ground biodiversity loss; yet a large part of Earth’s biodiversity is literally hidden below ground. Whether reductions of biodiversity in soil communities below ground have consequences for the overall performance of an ecosystem remains unresolved. It is important to investigate this in view of recent observations that soil biodiversity is declining and that soil communities are changing upon land use intensification. We established soil communities differing in composition and diversity and tested their impact on eight ecosystem functions in model grassland communities. We show that soil biodiversity loss and simplification of soil community composition impair multiple ecosystem functions, including plant diversity, decomposition, nutrient retention, and nutrient cycling. The average response of all measured ecosystem functions (ecosystem multifunctionality) exhibited a strong positive linear relationship to indicators of soil biodiversity, suggesting that soil community composition is a key factor in regulating ecosystem functioning. Our results indicate that changes in soil communities and the loss of soil biodiversity threaten ecosystem multifunctionality and sustainability. PMID:24639507

Building essential biodiversity variables (EBVs) of species distribution and abundance at a global scale.

Science.gov (United States)

Kissling, W Daniel; Ahumada, Jorge A; Bowser, Anne; Fernandez, Miguel; Fernández, Néstor; García, Enrique Alonso; Guralnick, Robert P; Isaac, Nick J B; Kelling, Steve; Los, Wouter; McRae, Louise; Mihoub, Jean-Baptiste; Obst, Matthias; Santamaria, Monica; Skidmore, Andrew K; Williams, Kristen J; Agosti, Donat; Amariles, Daniel; Arvanitidis, Christos; Bastin, Lucy; De Leo, Francesca; Egloff, Willi; Elith, Jane; Hobern, Donald; Martin, David; Pereira, Henrique M; Pesole, Graziano; Peterseil, Johannes; Saarenmaa, Hannu; Schigel, Dmitry; Schmeller, Dirk S; Segata, Nicola; Turak, Eren; Uhlir, Paul F; Wee, Brian; Hardisty, Alex R

2018-02-01

Much biodiversity data is collected worldwide, but it remains challenging to assemble the scattered knowledge for assessing biodiversity status and trends. The concept of Essential Biodiversity Variables (EBVs) was introduced to structure biodiversity monitoring globally, and to harmonize and standardize biodiversity data from disparate sources to capture a minimum set of critical variables required to study, report and manage biodiversity change. Here, we assess the challenges of a 'Big Data' approach to building global EBV data products across taxa and spatiotemporal scales, focusing on species distribution and abundance. The majority of currently available data on species distributions derives from incidentally reported observations or from surveys where presence-only or presence-absence data are sampled repeatedly with standardized protocols. Most abundance data come from opportunistic population counts or from population time series using standardized protocols (e.g. repeated surveys of the same population from single or multiple sites). Enormous complexity exists in integrating these heterogeneous, multi-source data sets across space, time, taxa and different sampling methods. Integration of such data into global EBV data products requires correcting biases introduced by imperfect detection and varying sampling effort, dealing with different spatial resolution and extents, harmonizing measurement units from different data sources or sampling methods, applying statistical tools and models for spatial inter- or extrapolation, and quantifying sources of uncertainty and errors in data and models. To support the development of EBVs by the Group on Earth Observations Biodiversity Observation Network (GEO BON), we identify 11 key workflow steps that will operationalize the process of building EBV data products within and across research infrastructures worldwide. These workflow steps take multiple sequential activities into account, including identification and

Screening concepts, characterization and structural analysis of microbial-derived bioactive lipopeptides: a review.

Science.gov (United States)

Biniarz, Piotr; Łukaszewicz, Marcin; Janek, Tomasz

2017-05-01

Lipopeptide biosurfactants are surface active biomolecules that are produced by a variety of microorganisms. Microbial lipopeptides have gained the interest of microbiologists, chemists and biochemists for their high biodiversity as well as efficient action, low toxicity and good biodegradability in comparison to synthetic counterparts. In this report, we review methods for the production, isolation and screening, purification and structural characterization of microbial lipopeptides. Several techniques are currently available for each step, and we describe the most commonly utilized and recently developed techniques in this review. Investigations on lipopeptide biosurfactants in natural products require efficient isolation techniques for the characterization and evaluation of chemical and biological properties. A combination of chromatographic and spectroscopic techniques offer opportunities for a better characterization of lipopeptide structures, which in turn can lead to the application of lipopeptides in food, pharmaceutical, cosmetics, agricultural and bioremediation industries.

Modelling avian biodiversity using raw, unclassified satellite imagery.

Science.gov (United States)

St-Louis, Véronique; Pidgeon, Anna M; Kuemmerle, Tobias; Sonnenschein, Ruth; Radeloff, Volker C; Clayton, Murray K; Locke, Brian A; Bash, Dallas; Hostert, Patrick

2014-01-01

Applications of remote sensing for biodiversity conservation typically rely on image classifications that do not capture variability within coarse land cover classes. Here, we compare two measures derived from unclassified remotely sensed data, a measure of habitat heterogeneity and a measure of habitat composition, for explaining bird species richness and the spatial distribution of 10 species in a semi-arid landscape of New Mexico. We surveyed bird abundance from 1996 to 1998 at 42 plots located in the McGregor Range of Fort Bliss Army Reserve. Normalized Difference Vegetation Index values of two May 1997 Landsat scenes were the basis for among-pixel habitat heterogeneity (image texture), and we used the raw imagery to decompose each pixel into different habitat components (spectral mixture analysis). We used model averaging to relate measures of avian biodiversity to measures of image texture and spectral mixture analysis fractions. Measures of habitat heterogeneity, particularly angular second moment and standard deviation, provide higher explanatory power for bird species richness and the abundance of most species than measures of habitat composition. Using image texture, alone or in combination with other classified imagery-based approaches, for monitoring statuses and trends in biological diversity can greatly improve conservation efforts and habitat management.

Experiencing biodiversity as a bridge over the science-society communication gap.

Science.gov (United States)

Meinard, Yves; Quétier, Fabien

2014-06-01

Drawing on the idea that biodiversity is simply the diversity of living things, and that everyone knows what diversity and living things mean, most conservation professionals eschew the need to explain the many complex ways in which biodiversity is understood in science. On many biodiversity-related issues, this lack of clarity leads to a communication gap between science and the general public, including decision makers who must design and implement biodiversity policies. Closing this communication gap is pivotal to the ability of science to inform sound environmental decision making. To address this communication gap, we propose a surrogate of biodiversity for communication purposes that captures the scientific definition of biodiversity yet can be understood by nonscientists; that is, biodiversity as a learning experience. The prerequisites of this or any other biodiversity communication surrogate are that it should have transdisciplinary relevance; not be measurable; be accessible to a wide audience; be usable to translate biodiversity issues; and understandably encompass biodiversity concepts. Biodiversity as a learning experience satisfies these prerequisites and is philosophically robust. More importantly, it can effectively contribute to closing the communication gap between biodiversity science and society at large. © 2013 Society for Conservation Biology.

Microbial Communities in the Vertical Atmosphere: Effects of Urbanization and the Natural Environment in Four North American Ecosystems

Science.gov (United States)

Docherty, K. M.; Lemmer, K. M.; Domingue, K. D.; Spring, A.; Kerber, T. V.; Mooney, M. M.

2017-12-01

Airborne transport of microbial communities is a key component of the global ecosystem because it serves as a mechanism for dispersing microbial life between all surface habitats on the planet. However, most of our understanding of airborne microbial distribution is derived from samples collected near the ground. Little is understood about how the vertical layers of the air may act as a habitat filter or how local terrestrial ecosystems contribute to a vast airborne microbial seedbank. Specifically, urbanization may fundamentally alter the terrestrial sources of airborne microbial biodiversity. To address this question, we conducted airborne sampling at minimally disturbed natural sites and paired urban sites in 4 different North American ecosystems: shortgrass steppe, desert scrub, eastern deciduous forest, and northern mesic forest. All natural area sites were co-located with NEON/Ameriflux tower sites collecting atmospheric data. We developed an airborne sampling platform that uses tethered helikites at 3 replicate locations within each ecosystem to launch remote-controlled sampler payloads. We designed sampler payloads to collect airborne bacteria and fungi from 150, 30 and 2 m above the ground. Payload requirements included: ability to be disinfected and remain contaminant-free during transport, remote open/close functionality, payload weight under 6 lbs and automated collection of weather data. After sampling for 6 hours at each location, we extracted DNA collected by the samplers. We also extracted DNA from soil and plant samples collected from each location, and characterized ground vegetation. We conducted bacterial 16S amplicon-based sequencing using Mi-Seq and sequence analysis using QIIME. We used ArcGIS to determine percent land use coverage. Our results demonstrate that terrestrial ecosystem type is the most important factor contributing to differences in airborne bacterial community composition, and that communities differed by ecosystem. The

Earth Observation for Biodiversity Assessment (EO-BA)

CSIR Research Space (South Africa)

Cho, Moses A

2012-10-01

Full Text Available in the Dukuduku coastal forest Earth Observation for Biodiversity Assessment (EO-BA) MA CHO, P DEBBA, R MATHIEU, A RAMOELO, L NAIDOO, H VAN DEVENTER, O MALAHLELA AND R MAIN CSIR Natural Resources and the Environment, Pretoria, South Africa PO Box 395... Observation for Biodiversity Assessment (EO-BA) programme is designed to enhance biodiversity assessment and conservation through the application of earth observation data, with particular focus on the African continent. MISSION To initiate and develop...

Can we detect oceanic biodiversity hotspots from space?

Science.gov (United States)

De Monte, Silvia; Soccodato, Alice; Alvain, Séverine; d'Ovidio, Francesco

2013-10-01

Understanding the variability of marine biodiversity is a central issue in microbiology. Current observational programs are based on in situ studies, but their implementation at the global scale is particularly challenging, owing to the ocean extent, its temporal variability and the heterogeneity of the data sources on which compilations are built. Here, we explore the possibility of identifying phytoplanktonic biodiversity hotspots from satellite. We define a Shannon entropy index based on patchiness in ocean color bio-optical anomalies. This index provides a high resolution (1 degree) global coverage. It shows a relation to temperature and mid-latitude maxima in accordance with those previously evidenced in microbiological biodiversity model and observational studies. Regional maxima are in remarkable agreement with several known biodiversity hotspots for plankton organisms and even for higher levels of the marine trophic chain, as well as with some in situ planktonic biodiversity estimates (from Atlantic Meridional Transect cruise). These results encourage to explore marine biodiversity with a coordinated effort of the molecular, ecological and remote sensing communities.

The circumpolar biodiversity monitoring program - Terrestrial plan

DEFF Research Database (Denmark)

Christensen, Tom; Payne, J.; Doyle, M.

, northern communities, and scientists to detect, understand and report on long-term change in Arctic terrestrial ecosystems and biodiversity. This presentation will outline the key management questions the plan aims to address and the proposed nested, multi-scaled approach linking targeted, research based...... monitoring with survey-based monitoring and remotely sensed data. The CBMP Terrestrial Plan intends to build upon and expand existing monitoring networks, engaging participants across a range of capacity and interests. The presentation will summarize the recommended focal soil ecosystem components...... and attributes to monitor in the plan related to soil invertebrates. Focal Ecosystem Components (FECs) of the soil decomposer system include the soil living invertebrates such as microarthropods, enchytraeids and earthworms and the functions performed by microorganisms such as nitrification, decomposition...

WOW! Windows on the Wild: A Biodiversity Primer.

Science.gov (United States)

Braus, Judy, Ed.; And Others

Windows on the Wild is an environmental education program of the World Wildlife Fund. This issue of WOW! focuses on biodiversity. Topics include: an interview with one of the world's leading experts on biodiversity; the lighter side of biodiversity through comics and cartoons; a species-scape that compares the number of species on the planet;…

Towards a Duty of Care for Biodiversity

Science.gov (United States)

Earl, G.; Curtis, A.; Allan, C.

2010-04-01

The decline in biodiversity is a worldwide phenomenon, with current rates of species extinction more dramatic than any previously recorded. Habitat loss has been identified as the major cause of biodiversity decline. In this article we suggest that a statutory duty of care would complement the current mix of policy options for biodiversity conservation. Obstacles hindering the introduction of a statutory duty of care include linguistic ambiguity about the terms ‘duty of care’ and ‘stewardship’ and how they are applied in a natural resource management context, and the absence of a mechanism to guide its implementation. Drawing on international literature and key informant interviews we have articulated characteristics of duty of care to reduce linguistic ambiguity, and developed a framework for implementing a duty of care for biodiversity at the regional scale. The framework draws on key elements of the common law ‘duty of care’, the concepts of ‘taking reasonable care’ and ‘avoiding foreseeable harm’, in its logic. Core elements of the framework include desired outcomes for biodiversity, supported by current recommended practices. The focus on outcomes provides opportunities for the development of innovative management practices. The framework incorporates multiple pathways for the redress of non-compliance including tiered negative sanctions, and positive measures to encourage compliance. Importantly, the framework addresses the need for change and adaptation that is a necessary part of biodiversity management.

Microbial functional diversity plays an important role in the degradation of polyhydroxybutyrate (PHB) in soil.

Science.gov (United States)

Dey, Samrat; Tribedi, Prosun

2018-03-01

Towards bioremediation of recalcitrant materials like synthetic polymer, soil has been recognized as a traditional site for disposal and subsequent degradation as some microorganisms in soil can degrade the polymer in a non-toxic, cost-effective, and environment friendly way. Microbial functional diversity is a constituent of biodiversity that includes wide range of metabolic activities that can influence numerous aspects of ecosystem functioning like ecosystem stability, nutrient availability, ecosystem dynamics, etc. Thus, in the current study, we assumed that microbial functional diversity could play an important role in polymer degradation in soil. To verify this hypothesis, we isolated soil from five different sites of landfill and examined several microbiological parameters wherein we observed a significant variation in heterotrophic microbial count as well as microbial activities among the soil microcosms tested. Multivariate analysis (principle component analysis) based on the carbon sources utilization pattern revealed that soil microcosms showed different metabolic patterns suggesting the variable distribution of microorganisms among the soil microcosms tested. Since microbial functional diversity depends on both microbial richness and evenness, Shannon diversity index was determined to measure microbial richness and Gini coefficient was determined to measure microbial evenness. The tested soil microcosms exhibited variation in both microbial richness and evenness suggesting the considerable difference in microbial functional diversity among the tested microcosms. We then measured polyhydroxybutyrate (PHB) degradation in soil microcosms after desired period of incubation of PHB in soil wherein we found that soil microcosms having higher functional diversity showed enhanced PHB degradation and soil microcosms having lower functional diversity showed reduced PHB degradation. We also noticed that all the tested soil microcosms showed similar pattern in both

Biodiversity's big wet secret: the global distribution of marine biological records reveals chronic under-exploration of the deep pelagic ocean.

Directory of Open Access Journals (Sweden)

Thomas J Webb

Full Text Available BACKGROUND: Understanding the distribution of marine biodiversity is a crucial first step towards the effective and sustainable management of marine ecosystems. Recent efforts to collate location records from marine surveys enable us to assemble a global picture of recorded marine biodiversity. They also effectively highlight gaps in our knowledge of particular marine regions. In particular, the deep pelagic ocean--the largest biome on Earth--is chronically under-represented in global databases of marine biodiversity. METHODOLOGY/PRINCIPAL FINDINGS: We use data from the Ocean Biogeographic Information System to plot the position in the water column of ca 7 million records of marine species occurrences. Records from relatively shallow waters dominate this global picture of recorded marine biodiversity. In addition, standardising the number of records from regions of the ocean differing in depth reveals that regardless of ocean depth, most records come either from surface waters or the sea bed. Midwater biodiversity is drastically under-represented. CONCLUSIONS/SIGNIFICANCE: The deep pelagic ocean is the largest habitat by volume on Earth, yet it remains biodiversity's big wet secret, as it is hugely under-represented in global databases of marine biological records. Given both its value in the provision of a range of ecosystem services, and its vulnerability to threats including overfishing and climate change, there is a pressing need to increase our knowledge of Earth's largest ecosystem.

Late Quaternary climate change shapes island biodiversity

DEFF Research Database (Denmark)

Weigelt, Patrick; Steinbauer, Manuel; Cabral, Juliano

2016-01-01

Island biogeographical models consider islands either as geologically static with biodiversity resulting from ecologically neutral immigration–extinction dynamics1, or as geologically dynamic with biodiversity resulting from immigration–speciation–extinction dynamics influenced by changes in island...... sea levels3, 4 and caused massive changes in island area, isolation and connectivity5, orders of magnitude faster than the geological processes of island formation, subsidence and erosion considered in island theory2, 6. Consequences of these oscillations for present biodiversity remain unassessed5, 7...

Positive biodiversity-productivity relationship predominant in global forests.

Science.gov (United States)

Liang, Jingjing; Crowther, Thomas W; Picard, Nicolas; Wiser, Susan; Zhou, Mo; Alberti, Giorgio; Schulze, Ernst-Detlef; McGuire, A David; Bozzato, Fabio; Pretzsch, Hans; de-Miguel, Sergio; Paquette, Alain; Hérault, Bruno; Scherer-Lorenzen, Michael; Barrett, Christopher B; Glick, Henry B; Hengeveld, Geerten M; Nabuurs, Gert-Jan; Pfautsch, Sebastian; Viana, Helder; Vibrans, Alexander C; Ammer, Christian; Schall, Peter; Verbyla, David; Tchebakova, Nadja; Fischer, Markus; Watson, James V; Chen, Han Y H; Lei, Xiangdong; Schelhaas, Mart-Jan; Lu, Huicui; Gianelle, Damiano; Parfenova, Elena I; Salas, Christian; Lee, Eungul; Lee, Boknam; Kim, Hyun Seok; Bruelheide, Helge; Coomes, David A; Piotto, Daniel; Sunderland, Terry; Schmid, Bernhard; Gourlet-Fleury, Sylvie; Sonké, Bonaventure; Tavani, Rebecca; Zhu, Jun; Brandl, Susanne; Vayreda, Jordi; Kitahara, Fumiaki; Searle, Eric B; Neldner, Victor J; Ngugi, Michael R; Baraloto, Christopher; Frizzera, Lorenzo; Bałazy, Radomir; Oleksyn, Jacek; Zawiła-Niedźwiecki, Tomasz; Bouriaud, Olivier; Bussotti, Filippo; Finér, Leena; Jaroszewicz, Bogdan; Jucker, Tommaso; Valladares, Fernando; Jagodzinski, Andrzej M; Peri, Pablo L; Gonmadje, Christelle; Marthy, William; O'Brien, Timothy; Martin, Emanuel H; Marshall, Andrew R; Rovero, Francesco; Bitariho, Robert; Niklaus, Pascal A; Alvarez-Loayza, Patricia; Chamuya, Nurdin; Valencia, Renato; Mortier, Frédéric; Wortel, Verginia; Engone-Obiang, Nestor L; Ferreira, Leandro V; Odeke, David E; Vasquez, Rodolfo M; Lewis, Simon L; Reich, Peter B

2016-10-14

The biodiversity-productivity relationship (BPR) is foundational to our understanding of the global extinction crisis and its impacts on ecosystem functioning. Understanding BPR is critical for the accurate valuation and effective conservation of biodiversity. Using ground-sourced data from 777,126 permanent plots, spanning 44 countries and most terrestrial biomes, we reveal a globally consistent positive concave-down BPR, showing that continued biodiversity loss would result in an accelerating decline in forest productivity worldwide. The value of biodiversity in maintaining commercial forest productivity alone-US$166 billion to 490 billion per year according to our estimation-is more than twice what it would cost to implement effective global conservation. This highlights the need for a worldwide reassessment of biodiversity values, forest management strategies, and conservation priorities. Copyright © 2016, American Association for the Advancement of Science.

Plant biodiversity of beech forests in central-northern Italy: a methodological approach for conservation purposes

Directory of Open Access Journals (Sweden)

Marcantonio M

2012-07-01

Full Text Available Forests are reckoned essentials as biodiversity reservoirs and carbon sinks. Current threats to forest ecosystems (e.g., climate changes, habitat loss and fragmentation, management changes call for monitoring their biodiversity and preserving their ecological functions. In this study, we characterized plants diversity of five beech forests located in central and north Apennines mountain chain, using results by a probabilistic sampling. In order to achieve our goals, we have considered species richness and abundance, taxonomic distinctness and species composition, using both old and new analytical approaches. Results have shown how: (1 the forest type dominated by Fagus sylvatica is characterized by high complexity, with marked compositional, structural and biodiversity differences; (2 beech forests of Pigelleto di Piancastagnaio and Valle della Corte show the highest plants diversity values. The ecological characteristics of these areas, which sustain high diversity values, are unique and of great conservation interest; (3 the use of species richness as the only diversity measure have not allowed an efficient differentiation between studied areas. Indeed, the use of different indexes and analytical methods is required to detect multiple characteristics of biological diversity, as well as to carry out efficient biodiversity surveys aimed to develop optimal conservation strategies. In the future, we plan to apply the sampling methodology and the analytical approach used in this paper to characterize plants diversity of similar forest types.

WineSeq®: A new tool for the study of the functional biodiversity of soils, and its use as a biomarker and guide for vitiviniculture practices

Directory of Open Access Journals (Sweden)

Belda Ignacio

2017-01-01

Full Text Available Apart from their explicit viticulture value, vineyards are natural reservoirs of biological diversity, constituting a complex, but interesting, anthropogenic ecosystem. The functional biodiversity found in vineyard soils is determinant not only for the physical-chemical and nutritional properties of these soils, but also for vine health and grape yield and quality. Diseases affecting vine health or grape quality cause significant economic losses for wineries, specially in the case of old and unique vineyards. In a precision viticulture context, the use of rational phytosanitary treatments and the application of adequate agronomical practices is the only way to maintain the biodiversity required by the fields to keep their stability and resilience. In this context, we have developed WineSeqⓇ (https://wineseq.com/, as the first online portal created to support the management of vine health and yield and to prevent or to diagnose vine diseases. The portal (https://portal.wineseq.com/ shows filtered and interpreted results of the global microbial population analyzed by metagenomics (DNA Next Generation Sequencing from soil, wood, grapes or fermentation samples. WineSeqⓇ technology is based on machine learning and cloud computing to integrate microbiome information with climatic, edaphic and agronomical information of interest. Thus, we make easier and understandable the analysis of the microbial variable for vinegrowers and winemakers.

Beyond biodiversity: fish metagenomes.

Science.gov (United States)

Ardura, Alba; Planes, Serge; Garcia-Vazquez, Eva

2011-01-01

Biodiversity and intra-specific genetic diversity are interrelated and determine the potential of a community to survive and evolve. Both are considered together in Prokaryote communities treated as metagenomes or ensembles of functional variants beyond species limits.Many factors alter biodiversity in higher Eukaryote communities, and human exploitation can be one of the most important for some groups of plants and animals. For example, fisheries can modify both biodiversity and genetic diversity (intra specific). Intra-specific diversity can be drastically altered by overfishing. Intense fishing pressure on one stock may imply extinction of some genetic variants and subsequent loss of intra-specific diversity. The objective of this study was to apply a metagenome approach to fish communities and explore its value for rapid evaluation of biodiversity and genetic diversity at community level. Here we have applied the metagenome approach employing the barcoding target gene coi as a model sequence in catch from four very different fish assemblages exploited by fisheries: freshwater communities from the Amazon River and northern Spanish rivers, and marine communities from the Cantabric and Mediterranean seas.Treating all sequences obtained from each regional catch as a biological unit (exploited community) we found that metagenomic diversity indices of the Amazonian catch sample here examined were lower than expected. Reduced diversity could be explained, at least partially, by overexploitation of the fish community that had been independently estimated by other methods.We propose using a metagenome approach for estimating diversity in Eukaryote communities and early evaluating genetic variation losses at multi-species level.

Beyond biodiversity: fish metagenomes.

Directory of Open Access Journals (Sweden)

Alba Ardura

Full Text Available Biodiversity and intra-specific genetic diversity are interrelated and determine the potential of a community to survive and evolve. Both are considered together in Prokaryote communities treated as metagenomes or ensembles of functional variants beyond species limits.Many factors alter biodiversity in higher Eukaryote communities, and human exploitation can be one of the most important for some groups of plants and animals. For example, fisheries can modify both biodiversity and genetic diversity (intra specific. Intra-specific diversity can be drastically altered by overfishing. Intense fishing pressure on one stock may imply extinction of some genetic variants and subsequent loss of intra-specific diversity. The objective of this study was to apply a metagenome approach to fish communities and explore its value for rapid evaluation of biodiversity and genetic diversity at community level. Here we have applied the metagenome approach employing the barcoding target gene coi as a model sequence in catch from four very different fish assemblages exploited by fisheries: freshwater communities from the Amazon River and northern Spanish rivers, and marine communities from the Cantabric and Mediterranean seas.Treating all sequences obtained from each regional catch as a biological unit (exploited community we found that metagenomic diversity indices of the Amazonian catch sample here examined were lower than expected. Reduced diversity could be explained, at least partially, by overexploitation of the fish community that had been independently estimated by other methods.We propose using a metagenome approach for estimating diversity in Eukaryote communities and early evaluating genetic variation losses at multi-species level.

An assessment of biodiversity surrogacy options in the Limpopo ...

African Journals Online (AJOL)

Because of the inadequacy of existing biodiversity distribution data, surrogate measures for regional biodiversity have long been used in conservation area selection. These measures include species and environmental data. However, the assumed relationship between surrogate measures and regional biodiversity has ...

Digital Geogames to Foster Local Biodiversity

Science.gov (United States)

Schaal, Sonja; Schaal, Steffen; Lude, Armin

2015-01-01

The valuing of biodiversity is considered to be a first step towards its conservation. Therefore, the aim of the BioDiv2Go project is to combine sensuous experiences discovering biodiversity with mobile technology and a game-based learning approach. Following the competence model for environmental education (Roczen et al, 2014), Geogames (location…

Comparative metagenomic and metatranscriptomic analyses of microbial communities in acid mine drainage.

Science.gov (United States)

Chen, Lin-xing; Hu, Min; Huang, Li-nan; Hua, Zheng-shuang; Kuang, Jia-liang; Li, Sheng-jin; Shu, Wen-sheng

2015-07-01

The microbial communities in acid mine drainage have been extensively studied to reveal their roles in acid generation and adaption to this environment. Lacking, however, are integrated community- and organism-wide comparative gene transcriptional analyses that could reveal the response and adaptation mechanisms of these extraordinary microorganisms to different environmental conditions. In this study, comparative metagenomics and metatranscriptomics were performed on microbial assemblages collected from four geochemically distinct acid mine drainage (AMD) sites. Taxonomic analysis uncovered unexpectedly high microbial biodiversity of these extremely acidophilic communities, and the abundant taxa of Acidithiobacillus, Leptospirillum and Acidiphilium exhibited high transcriptional activities. Community-wide comparative analyses clearly showed that the AMD microorganisms adapted to the different environmental conditions via regulating the expression of genes involved in multiple in situ functional activities, including low-pH adaptation, carbon, nitrogen and phosphate assimilation, energy generation, environmental stress resistance, and other functions. Organism-wide comparative analyses of the active taxa revealed environment-dependent gene transcriptional profiles, especially the distinct strategies used by Acidithiobacillus ferrivorans and Leptospirillum ferrodiazotrophum in nutrients assimilation and energy generation for survival under different conditions. Overall, these findings demonstrate that the gene transcriptional profiles of AMD microorganisms are closely related to the site physiochemical characteristics, providing clues into the microbial response and adaptation mechanisms in the oligotrophic, extremely acidic environments.

Microbial pollution indicators and culturable heterotrophic bacteria in a Mediterranean area (Southern Adriatic Sea Italian coasts)

Science.gov (United States)

Stabili, L.; Cavallo, R. A.

2011-05-01

In the present study we evaluated the degree of microbial water pollution along the coast line between Brindisi and Santa Maria di Leuca (Southern Adriatic Sea) as well as the culturable heterotrophic bacteria abundances and biodiversity in relation to the microbiological quality of the water. A total of 3773 colonies were isolated, subcultured and identified by several morphological, cultural and biochemical methods including the standardized API 20 E and API 20 NE tests. Along the examined coastal tract the microbial pollution indicators were always below the tolerance limits for bathing waters defined by the CEE directive, suggesting a good sanitary quality. Concerning culturable heterotrophic bacteria, different temporal density trends were observed in the four sites in relation to their geographical position. A positive relationship between the bacterial abundances and the temperature was observed in S. Cataldo and Otranto. The culturable bacterial community was mainly composed of the genera Aeromonas, Pseudomonas, Photobacterium and Flavobacterium. The Enterobacteriaceae family represented a conspicuous component of the bacterial community too. Bacilli were predominant among the Gram-positive bacteria. Of interest is the isolation of yeasts (2% at the surface and 1% at the bottom) taking into account their capability of biodegradation of various materials. Because of the low level of microbial pollution recorded, our results are indicative of the natural variation and diversity of the culturable bacterial community in such an oligotrophic ecosystem and could represent a good point of comparison with other ecosystems as well as a baseline for long term studies aimed to evaluate the effects of environmental fluctuations and human impacts on this aspect of biodiversity in coastal areas.

Large conservation gains possible for global biodiversity facets

Science.gov (United States)

Pollock, Laura J.; Thuiller, Wilfried; Jetz, Walter

2017-06-01

Different facets of biodiversity other than species numbers are increasingly appreciated as critical for maintaining the function of ecosystems and their services to humans. While new international policy and assessment processes such as the Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services (IPBES) recognize the importance of an increasingly global, quantitative and comprehensive approach to biodiversity protection, most insights are still focused on a single facet of biodiversity—species. Here we broaden the focus and provide an evaluation of how much of the world’s species, functional and phylogenetic diversity of birds and mammals is currently protected and the scope for improvement. We show that the large existing gaps in the coverage for each facet of diversity could be remedied by a slight expansion of protected areas: an additional 5% of the land has the potential to more than triple the protected range of species or phylogenetic or functional units. Further, the same areas are often priorities for multiple diversity facets and for both taxa. However, we find that the choice of conservation strategy has a fundamental effect on outcomes. It is more difficult (that is, requires more land) to maximize basic representation of the global biodiversity pool than to maximize local diversity. Overall, species and phylogenetic priorities are more similar to each other than they are to functional priorities, and priorities for the different bird biodiversity facets are more similar than those of mammals. Our work shows that large gains in biodiversity protection are possible, while also highlighting the need to explicitly link desired conservation objectives and biodiversity metrics. We provide a framework and quantitative tools to advance these goals for multi-faceted biodiversity conservation.

Biodiversity offsets and the challenge of achieving no net loss.

Science.gov (United States)

Gardner, Toby A; VON Hase, Amrei; Brownlie, Susie; Ekstrom, Jonathan M M; Pilgrim, John D; Savy, Conrad E; Stephens, R T Theo; Treweek, Jo; Ussher, Graham T; Ward, Gerri; Ten Kate, Kerry

2013-12-01

Businesses, governments, and financial institutions are increasingly adopting a policy of no net loss of biodiversity for development activities. The goal of no net loss is intended to help relieve tension between conservation and development by enabling economic gains to be achieved without concomitant biodiversity losses. biodiversity offsets represent a necessary component of a much broader mitigation strategy for achieving no net loss following prior application of avoidance, minimization, and remediation measures. However, doubts have been raised about the appropriate use of biodiversity offsets. We examined what no net loss means as a desirable conservation outcome and reviewed the conditions that determine whether, and under what circumstances, biodiversity offsets can help achieve such a goal. We propose a conceptual framework to substitute the often ad hoc approaches evident in many biodiversity offset initiatives. The relevance of biodiversity offsets to no net loss rests on 2 fundamental premises. First, offsets are rarely adequate for achieving no net loss of biodiversity alone. Second, some development effects may be too difficult or risky, or even impossible, to offset. To help to deliver no net loss through biodiversity offsets, biodiversity gains must be comparable to losses, be in addition to conservation gains that may have occurred in absence of the offset, and be lasting and protected from risk of failure. Adherence to these conditions requires consideration of the wider landscape context of development and offset activities, timing of offset delivery, measurement of biodiversity, accounting procedures and rule sets used to calculate biodiversity losses and gains and guide offset design, and approaches to managing risk. Adoption of this framework will strengthen the potential for offsets to provide an ecologically defensible mechanism that can help reconcile conservation and development. Balances de Biodiversidad y el Reto de No Obtener P�

How economic contexts shape calculations of yield in biodiversity offsetting.

Science.gov (United States)

Carver, L; Sullivan, S

2017-10-01

We examined and analyzed methods used to create numerical equivalence between sites affected by development and proposed conservation offset sites. Application of biodiversity offsetting metrics in development impact and mitigation assessments is thought to standardize biodiversity conservation outcomes, sometimes termed yield by those conducting these calculations. The youth of biodiversity offsetting in application, however, means little is known about how biodiversity valuations and offset contracts between development and offset sites are agreed on in practice or about long-term conservation outcomes. We examined how sites were made commensurable and how biodiversity gains or yields were calculated and negotiated for a specific offset contract in a government-led pilot study of biodiversity offsets in England. Over 24 months, we conducted participant observations of various stages in the negotiation of offset contracts through repeated visits to 3 (anonymized) biodiversity offset contract sites. We conducted 50 semistructured interviews of stakeholders in regional and local government, the private sector, and civil society. We used a qualitative data analysis software program (DEDOOSE) to textually analyze interview transcriptions. We also compared successive iterations of biodiversity-offsetting calculation spreadsheets and planning documents. A particular focus was the different iterations of a specific biodiversity impact assessment in which the biodiversity offsetting metric developed by the U.K.'s Department for Environment, Food and Rural Affairs was used. We highlight 3 main findings. First, biodiversity offsetting metrics were amended in creative ways as users adapted inputs to metric calculations to balance and negotiate conflicting requirements. Second, the practice of making different habitats equivalent to each other through the application of biodiversity offsetting metrics resulted in commensuration outcomes that may not provide projected

Brown World Invertebrates Contradict Green World Biodiversity Theory

International Nuclear Information System (INIS)

Patrick, L.B.; Kershner, M.W.; Fraser, L.H.

2008-01-01

Biodiversity-productivity theory predicts that ecosystems with increased productivity due to excessive limiting-nutrient loading will have decreased taxonomic diversity. In this 4-year study, we elevated productivity by adding NPK fertilizer to 20 m diameter plots in an old-field grassland to test the effects of anthropogenically mediated nutrient loading on plant and epigeal arthropod communities. While plants responded as predicted by the biodiversity-productivity theory, the epigeal arthropod community had highest species richness within the fertilized high-productivity treatments. We conclude that the contradictory response of the largely detrital-based epigeal community should alter conventional biodiversity-productivity theory and could affect terrestrial biodiversity conservation strategies.

Systems in peril: Climate change, agriculture and biodiversity in Australia

International Nuclear Information System (INIS)

Cocklin, Chris; Dibden, Jacqui

2009-01-01

This paper reflects on the interplay amongst three closely linked systems - climate, agriculture and biodiversity - in the Australian context. The advance of a European style of agriculture has imperilled Australian biodiversity. The loss and degradation of biodiversity has, in turn, had negative consequences for agriculture. Climate change is imposing new pressures on both agriculture and biodiversity. From a policy and management perspective, though, it is possible to envisage mitigation and adaptation responses that would alleviate pressures on all three systems (climate, agriculture, biodiversity). In this way, the paper seeks to make explicit the important connections between science and policy. The paper outlines the distinctive features of both biodiversity and agriculture in the Australian context. The discussion then addresses the impacts of agriculture on biodiversity, followed by an overview of how climate change is impacting on both of these systems. The final section of the paper offers some commentary on current policy and management strategies that are targeted at mitigating the loss of biodiversity and which may also have benefits in terms of climate change.

Resilience of freshwater communities of small microbial eukaryotes undergoing severe drought events

Directory of Open Access Journals (Sweden)

Marianne eSimon

2016-05-01

Full Text Available Small and shallow aquatic ecosystems such as ponds and streams constitute a significant proportion of continental surface waters, especially in temperate zones. In comparison with bigger lakes and rivers, they harbor higher biodiversity but they also exhibit reduced buffering capacity face to environmental shifts, such that climate global change can affect them in a more drastic way. For instance, many temperate areas are predicted to undergo droughts with increasing frequency in the near future, which may lead to the temporal desiccation of streams and ponds. In this work, we monitored temporal dynamics of planktonic communities of microbial eukaryotes (cell size range 0.2-5 µm in one brook and one pond that experienced recurrent droughts from 1 to 5 consecutive months during a temporal survey carried out monthly for two years based on high-throughput 18S rDNA metabarcoding. During drought-induced desiccation events, protist communities present in the remaining dry sediment, though highly diverse, differed radically from their planktonic counterparts. However, after water refill, the aquatic protist assemblages recovered their original structure within a month. This rapid recovery indicates that these eukaryotic communities are resilient to droughts, most likely via the entrance in dormancy. This property is essential for the long-term survival and functional stability of small freshwater ecosystems.

Evaluating the use of diversity indices to distinguish between microbial communities with different traits.

Science.gov (United States)

Feranchuk, Sergey; Belkova, Natalia; Potapova, Ulyana; Kuzmin, Dmitry; Belikov, Sergei

2018-05-23

Several measures of biodiversity are commonly used to describe microbial communities, analyzed using 16S gene sequencing. A wide range of available experiments on 16S gene sequencing allows us to present a framework for a comparison of various diversity indices. The criterion for the comparison is the statistical significance of the difference in index values for microbial communities with different traits, within the same experiment. The results of the evaluation indicate that Shannon diversity is the most effective measure among the commonly used diversity indices. The results also indicate that, within the present framework, the Gini coefficient as a diversity index is comparable to Shannon diversity, despite the fact that the Gini coefficient, as a diversity estimator, is far less popular in microbiology than several other measures. Copyright © 2018 Institut Pasteur. Published by Elsevier Masson SAS. All rights reserved.

Data hosting infrastructure for primary biodiversity data

Science.gov (United States)

2011-01-01

Background Today, an unprecedented volume of primary biodiversity data are being generated worldwide, yet significant amounts of these data have been and will continue to be lost after the conclusion of the projects tasked with collecting them. To get the most value out of these data it is imperative to seek a solution whereby these data are rescued, archived and made available to the biodiversity community. To this end, the biodiversity informatics community requires investment in processes and infrastructure to mitigate data loss and provide solutions for long-term hosting and sharing of biodiversity data. Discussion We review the current state of biodiversity data hosting and investigate the technological and sociological barriers to proper data management. We further explore the rescuing and re-hosting of legacy data, the state of existing toolsets and propose a future direction for the development of new discovery tools. We also explore the role of data standards and licensing in the context of data hosting and preservation. We provide five recommendations for the biodiversity community that will foster better data preservation and access: (1) encourage the community's use of data standards, (2) promote the public domain licensing of data, (3) establish a community of those involved in data hosting and archival, (4) establish hosting centers for biodiversity data, and (5) develop tools for data discovery. Conclusion The community's adoption of standards and development of tools to enable data discovery is essential to sustainable data preservation. Furthermore, the increased adoption of open content licensing, the establishment of data hosting infrastructure and the creation of a data hosting and archiving community are all necessary steps towards the community ensuring that data archival policies become standardized. PMID:22373257

Simulated nitrogen deposition causes a decline of intra- and extraradical abundance of arbuscular mycorrhizal fungi and changes in microbial community structure in northern hardwood forests

Science.gov (United States)

Linda T.A. van Diepen; Erik A. Lilleskov; Kurt S. Pregitzer; R. Michael Miller

2010-01-01

Increased nitrogen (N) deposition caused by human activities has altered ecosystem functioning and biodiversity. To understand the effects of altered N availability, we measured the abundance of arbuscular mycorrhizal fungi (AMF) and the microbial community in northern hardwood forests exposed to long-term (12 years) simulated N deposition (30 kg N ha-1...

Biogeographical diversity of leaf-associated microbial communities from salt-secreting Tamarix trees of the Dead Sea region.

Science.gov (United States)

Qvit-Raz, Noga; Finkel, Omri M; Al-Deeb, Taghleb M; Malkawi, Hanan I; Hindiyeh, Muna Y; Jurkevitch, Edouard; Belkin, Shimshon

2012-02-01

The leaves of Tamarix, a salt-secreting desert tree, form an extreme niche that harbors a unique microbial community. In view of the global distribution of this tree, its island-like phyllosphere is highly suitable for studying microbial diversity along geographical gradients. Here we present an analysis of microbial community diversity using leaf surface samples collected at six different sites, on both sides of the Dead Sea, over a period of one year. Biodiversity analysis of denaturing gradient gel electrophoresis (DGGE) patterns of the bacterial 16S rRNA gene revealed a significant degree of bacterial community similarity within trees sampled at the same site, much higher than the similarity between trees from different geographical locations. Statistical analysis indicated that the degree of similarity was negatively correlated with the distance between sampling sites, and that a weak correlation existed between diversity and leaf pH. Copyright © 2011 Institut Pasteur. Published by Elsevier Masson SAS. All rights reserved.

Depth-resolved microbial community analyses in the anaerobic co-digester of dewatered sewage sludge with food waste.

Science.gov (United States)

Xu, Rui; Yang, Zhao-Hui; Zheng, Yue; Zhang, Hai-Bo; Liu, Jian-Bo; Xiong, Wei-Ping; Zhang, Yan-Ru; Ahmad, Kito

2017-11-01

This study evaluated the impacts of FW addition on co-digestion in terms of microbial community. Anaerobic co-digestion (AcoD) reactors were conducted at gradually increased addition of food waste (FW) from 0 to 4kg-VSm -3 d -1 for 220days. Although no markable acidification was found at an OLR of 4kg-VSm -3 d -1 , the unhealthy operation was observed in aspect of an inhibited methane yield (185mLg -1 VS added ), which was restricted by 40% when compared with its peak value. Deterioration of digestion process was timely indicated by the dramatic decrease of archaeal population and microbial biodiversity. Furthermore, the cooperation network showed a considerable number of rare species (<1%) were strongly correlated with methane production, which were frequently overlooked due to the limits of detecting resolution or analysis methods before. Advances in the analysis of sensitive microbial community enable us to detect the early disturbances in AcoD reactors. Copyright © 2017 Elsevier Ltd. All rights reserved.

Standardized Assessment of Biodiversity Trends in Tropical Forest Protected Areas: The End Is Not in Sight.

Directory of Open Access Journals (Sweden)

Lydia Beaudrot

2016-01-01

Full Text Available Extinction rates in the Anthropocene are three orders of magnitude higher than background and disproportionately occur in the tropics, home of half the world's species. Despite global efforts to combat tropical species extinctions, lack of high-quality, objective information on tropical biodiversity has hampered quantitative evaluation of conservation strategies. In particular, the scarcity of population-level monitoring in tropical forests has stymied assessment of biodiversity outcomes, such as the status and trends of animal populations in protected areas. Here, we evaluate occupancy trends for 511 populations of terrestrial mammals and birds, representing 244 species from 15 tropical forest protected areas on three continents. For the first time to our knowledge, we use annual surveys from tropical forests worldwide that employ a standardized camera trapping protocol, and we compute data analytics that correct for imperfect detection. We found that occupancy declined in 22%, increased in 17%, and exhibited no change in 22% of populations during the last 3-8 years, while 39% of populations were detected too infrequently to assess occupancy changes. Despite extensive variability in occupancy trends, these 15 tropical protected areas have not exhibited systematic declines in biodiversity (i.e., occupancy, richness, or evenness at the community level. Our results differ from reports of widespread biodiversity declines based on aggregated secondary data and expert opinion and suggest less extreme deterioration in tropical forest protected areas. We simultaneously fill an important conservation data gap and demonstrate the value of large-scale monitoring infrastructure and powerful analytics, which can be scaled to incorporate additional sites, ecosystems, and monitoring methods. In an era of catastrophic biodiversity loss, robust indicators produced from standardized monitoring infrastructure are critical to accurately assess population outcomes

Contrasting effects of visiting urban green-space and the countryside on biodiversity knowledge and conservation support.

Science.gov (United States)

Coldwell, Deborah F; Evans, Karl L

2017-01-01

Conservation policy frequently assumes that increasing people's exposure to green-space enhances their knowledge of the natural world and desire to protect it. Urban development is, however, considered to be driving declining connectedness to nature. Despite this the evidence base supporting the assumption that visiting green-spaces promotes biodiversity knowledge and conservation support, and the impacts of urbanization on these relationships, is surprisingly limited. Using data from door-to-door surveys of nearly 300 residents in three pairs of small and large urban areas in England we demonstrate that people who visit green-space more regularly have higher biodiversity knowledge and support for conservation (measured using scales of pro-environmental behavior). Crucially these relationships only arise when considering visits to the countryside and not the frequency of visits to urban green-space. These patterns are robust to a suite of confounding variables including nature orientated motivations for visiting green-space, socio-economic and demographic factors, garden-use and engagement with natural history programs. Despite this the correlations that we uncover cannot unambiguously demonstrate that visiting the countryside improves biodiversity knowledge and conservation support. We consider it likely, however, that two mechanisms operate through a positive feedback loop i.e. increased visits to green-space promote an interest in and knowledge of biodiversity and support for conservation, which in turn further increase the desire to visit green-space and experience nature. The intensity of urbanization around peoples' homes, but not city size, is negatively associated with their frequency of countryside visits and biodiversity knowledge. Designing less intensely urbanized cities with good access to the countryside, combined with conservation policies that promote access to the countryside thus seems likely to maximize urban residents' biodiversity knowledge and

Standardized Assessment of Biodiversity Trends in Tropical Forest Protected Areas: The End Is Not in Sight.

Science.gov (United States)

Beaudrot, Lydia; Ahumada, Jorge A; O'Brien, Timothy; Alvarez-Loayza, Patricia; Boekee, Kelly; Campos-Arceiz, Ahimsa; Eichberg, David; Espinosa, Santiago; Fegraus, Eric; Fletcher, Christine; Gajapersad, Krisna; Hallam, Chris; Hurtado, Johanna; Jansen, Patrick A; Kumar, Amit; Larney, Eileen; Lima, Marcela Guimarães Moreira; Mahony, Colin; Martin, Emanuel H; McWilliam, Alex; Mugerwa, Badru; Ndoundou-Hockemba, Mireille; Razafimahaimodison, Jean Claude; Romero-Saltos, Hugo; Rovero, Francesco; Salvador, Julia; Santos, Fernanda; Sheil, Douglas; Spironello, Wilson R; Willig, Michael R; Winarni, Nurul L; Zvoleff, Alex; Andelman, Sandy J

2016-01-01

Extinction rates in the Anthropocene are three orders of magnitude higher than background and disproportionately occur in the tropics, home of half the world's species. Despite global efforts to combat tropical species extinctions, lack of high-quality, objective information on tropical biodiversity has hampered quantitative evaluation of conservation strategies. In particular, the scarcity of population-level monitoring in tropical forests has stymied assessment of biodiversity outcomes, such as the status and trends of animal populations in protected areas. Here, we evaluate occupancy trends for 511 populations of terrestrial mammals and birds, representing 244 species from 15 tropical forest protected areas on three continents. For the first time to our knowledge, we use annual surveys from tropical forests worldwide that employ a standardized camera trapping protocol, and we compute data analytics that correct for imperfect detection. We found that occupancy declined in 22%, increased in 17%, and exhibited no change in 22% of populations during the last 3-8 years, while 39% of populations were detected too infrequently to assess occupancy changes. Despite extensive variability in occupancy trends, these 15 tropical protected areas have not exhibited systematic declines in biodiversity (i.e., occupancy, richness, or evenness) at the community level. Our results differ from reports of widespread biodiversity declines based on aggregated secondary data and expert opinion and suggest less extreme deterioration in tropical forest protected areas. We simultaneously fill an important conservation data gap and demonstrate the value of large-scale monitoring infrastructure and powerful analytics, which can be scaled to incorporate additional sites, ecosystems, and monitoring methods. In an era of catastrophic biodiversity loss, robust indicators produced from standardized monitoring infrastructure are critical to accurately assess population outcomes and identify

Standardized Assessment of Biodiversity Trends in Tropical Forest Protected Areas: The End Is Not in Sight

Science.gov (United States)

O'Brien, Timothy; Alvarez-Loayza, Patricia; Boekee, Kelly; Campos-Arceiz, Ahimsa; Eichberg, David; Espinosa, Santiago; Fegraus, Eric; Fletcher, Christine; Gajapersad, Krisna; Hallam, Chris; Hurtado, Johanna; Jansen, Patrick A.; Kumar, Amit; Larney, Eileen; Lima, Marcela Guimarães Moreira; Mahony, Colin; Martin, Emanuel H.; McWilliam, Alex; Mugerwa, Badru; Ndoundou-Hockemba, Mireille; Razafimahaimodison, Jean Claude; Romero-Saltos, Hugo; Rovero, Francesco; Salvador, Julia; Santos, Fernanda; Sheil, Douglas; Spironello, Wilson R.; Willig, Michael R.; Winarni, Nurul L.; Zvoleff, Alex; Andelman, Sandy J.

2016-01-01

Extinction rates in the Anthropocene are three orders of magnitude higher than background and disproportionately occur in the tropics, home of half the world’s species. Despite global efforts to combat tropical species extinctions, lack of high-quality, objective information on tropical biodiversity has hampered quantitative evaluation of conservation strategies. In particular, the scarcity of population-level monitoring in tropical forests has stymied assessment of biodiversity outcomes, such as the status and trends of animal populations in protected areas. Here, we evaluate occupancy trends for 511 populations of terrestrial mammals and birds, representing 244 species from 15 tropical forest protected areas on three continents. For the first time to our knowledge, we use annual surveys from tropical forests worldwide that employ a standardized camera trapping protocol, and we compute data analytics that correct for imperfect detection. We found that occupancy declined in 22%, increased in 17%, and exhibited no change in 22% of populations during the last 3–8 years, while 39% of populations were detected too infrequently to assess occupancy changes. Despite extensive variability in occupancy trends, these 15 tropical protected areas have not exhibited systematic declines in biodiversity (i.e., occupancy, richness, or evenness) at the community level. Our results differ from reports of widespread biodiversity declines based on aggregated secondary data and expert opinion and suggest less extreme deterioration in tropical forest protected areas. We simultaneously fill an important conservation data gap and demonstrate the value of large-scale monitoring infrastructure and powerful analytics, which can be scaled to incorporate additional sites, ecosystems, and monitoring methods. In an era of catastrophic biodiversity loss, robust indicators produced from standardized monitoring infrastructure are critical to accurately assess population outcomes and identify

Genome-Based Microbial Taxonomy Coming of Age.

Science.gov (United States)

Hugenholtz, Philip; Skarshewski, Adam; Parks, Donovan H

2016-06-01

Reconstructing the complete evolutionary history of extant life on our planet will be one of the most fundamental accomplishments of scientific endeavor, akin to the completion of the periodic table, which revolutionized chemistry. The road to this goal is via comparative genomics because genomes are our most comprehensive and objective evolutionary documents. The genomes of plant and animal species have been systematically targeted over the past decade to provide coverage of the tree of life. However, multicellular organisms only emerged in the last 550 million years of more than three billion years of biological evolution and thus comprise a small fraction of total biological diversity. The bulk of biodiversity, both past and present, is microbial. We have only scratched the surface in our understanding of the microbial world, as most microorganisms cannot be readily grown in the laboratory and remain unknown to science. Ground-breaking, culture-independent molecular techniques developed over the past 30 years have opened the door to this so-called microbial dark matter with an accelerating momentum driven by exponential increases in sequencing capacity. We are on the verge of obtaining representative genomes across all life for the first time. However, historical use of morphology, biochemical properties, behavioral traits, and single-marker genes to infer organismal relationships mean that the existing highly incomplete tree is riddled with taxonomic errors. Concerted efforts are now needed to synthesize and integrate the burgeoning genomic data resources into a coherent universal tree of life and genome-based taxonomy. Copyright © 2016 Cold Spring Harbor Laboratory Press; all rights reserved.

Economic Inequality Predicts Biodiversity Loss

OpenAIRE

Mikkelson, Gregory M.; Gonzalez, Andrew; Peterson, Garry D.

2007-01-01

Human activity is causing high rates of biodiversity loss. Yet, surprisingly little is known about the extent to which socioeconomic factors exacerbate or ameliorate our impacts on biological diversity. One such factor, economic inequality, has been shown to affect public health, and has been linked to environmental problems in general. We tested how strongly economic inequality is related to biodiversity loss in particular. We found that among countries, and among US states, the number of sp...

Filling in biodiversity threat gaps

DEFF Research Database (Denmark)

Joppa, L. N.; O'Connor, Brian; Visconti, Piero

2016-01-01

increase to 10,000 times the background rate should species threatened with extinction succumb to pressures they face (4). Reversing these trends is a focus of the Convention on Biological Diversity's 2020 Strategic Plan for Biodiversity and its 20 Aichi Targets and is explicitly incorporated...... into the United Nations' 2030 Agenda for Sustainable Development and its 17 Sustainable Development Goals (SDGs). We identify major gaps in data available for assessing global biodiversity threats and suggest mechanisms for closing them....

Forest Resilience, Biodiversity, and Climate Change

Science.gov (United States)

I. Thompson; B. Mackey; S. McNulty; A. Mosseler

2009-01-01

This paper reviews the concepts of ecosystem resilience, resistance, and stability in forests and their relationship to biodiversity, with particular reference to climate change. The report is a direct response to a request by the ninth meeting of the Conference of the Parties to the CBD, in decision IX/51, to explore the links between biodiversity, forest ecosystem...

Perturbation of an arctic soil microbial community by metal nanoparticles

Energy Technology Data Exchange (ETDEWEB)

Kumar, Niraj [Department of Biology, Queen' s University, Kingston, Ontario K7L 3N6 (Canada); Shah, Vishal [Department of Biology, Dowling College, Oakdale, NY 11769 (United States); Walker, Virginia K., E-mail: walkervk@queensu.ca [Department of Biology, Queen' s University, Kingston, Ontario K7L 3N6 (Canada); Department of Biology, School of Environmental Studies and Department of Microbiology and Immunology, Queen' s University, Kingston, Ontario K7L 3N6 (Canada)

2011-06-15

Highlights: {yields} Silver, copper and silica nanoparticles had an impact on arctic soil {yields} A microbial community toxicity indicator was developed {yields} Community surveys using pyrosequencing confirmed a shift in bacterial biodiversity {yields} Troublingly, silver nanoparticles were highly toxic to a plant beneficial bacterium - Abstract: Technological advances allowing routine nanoparticle (NP) manufacture have enabled their use in electronic equipment, foods, clothing and medical devices. Although some NPs have antibacterial activity, little is known about their environmental impact and there is no information on the influence of NPs on soil in the possibly vulnerable ecosystems of polar regions. The potential toxicity of 0.066% silver, copper or silica NPs on a high latitude (>78{sup o}N) soil was determined using community level physiological profiles (CLPP), fatty acid methyl ester (FAME) assays and DNA analysis, including sequencing and denaturing gradient gel electrophoresis (DGGE). The results of these different investigations were amalgamated in order to develop a community toxicity indicator, which revealed that of the three NPs examined, silver NPs could be classified as highly toxic to these arctic consortia. Subsequent culture-based studies confirmed that one of the community-identified plant-associating bacteria, Bradyrhizobium canariense, appeared to have a marked sensitivity to silver NPs. Thus, NP contamination of arctic soils particularly by silver NPs is a concern and procedures for mitigation and remediation of such pollution should be a priority for investigation.

Perturbation of an arctic soil microbial community by metal nanoparticles

International Nuclear Information System (INIS)

Kumar, Niraj; Shah, Vishal; Walker, Virginia K.

2011-01-01

Highlights: → Silver, copper and silica nanoparticles had an impact on arctic soil → A microbial community toxicity indicator was developed → Community surveys using pyrosequencing confirmed a shift in bacterial biodiversity → Troublingly, silver nanoparticles were highly toxic to a plant beneficial bacterium - Abstract: Technological advances allowing routine nanoparticle (NP) manufacture have enabled their use in electronic equipment, foods, clothing and medical devices. Although some NPs have antibacterial activity, little is known about their environmental impact and there is no information on the influence of NPs on soil in the possibly vulnerable ecosystems of polar regions. The potential toxicity of 0.066% silver, copper or silica NPs on a high latitude (>78 o N) soil was determined using community level physiological profiles (CLPP), fatty acid methyl ester (FAME) assays and DNA analysis, including sequencing and denaturing gradient gel electrophoresis (DGGE). The results of these different investigations were amalgamated in order to develop a community toxicity indicator, which revealed that of the three NPs examined, silver NPs could be classified as highly toxic to these arctic consortia. Subsequent culture-based studies confirmed that one of the community-identified plant-associating bacteria, Bradyrhizobium canariense, appeared to have a marked sensitivity to silver NPs. Thus, NP contamination of arctic soils particularly by silver NPs is a concern and procedures for mitigation and remediation of such pollution should be a priority for investigation.

Soil biodiversity and soil community composition determine ecosystem multifunctionality

NARCIS (Netherlands)

Wagg, C.; Bender, S.F.; Widmer, D.; van der Heijden, Marcellus|info:eu-repo/dai/nl/240923901

2014-01-01

Biodiversity loss has become a global concern as evidence accumulates that it will negatively affect ecosystem services on which society depends. So far, most studies have focused on the ecological consequences of above-ground biodiversity loss; yet a large part of Earth’s biodiversity is literally

Biodiversity information resource sharing as a viable strategy for ...

African Journals Online (AJOL)

Availability of accurate biodiversity information is a paramount necessity in facilitating the process of decision making on biodiversity resource use and protection. In Tanzania, like other countries in East Africa, a lot of biodiversity data and information is produced, analysed and disseminated as reports, seminars, ...

From cultured to uncultured genome sequences: metagenomics and modeling microbial ecosystems.

Science.gov (United States)

Garza, Daniel R; Dutilh, Bas E

2015-11-01

Microorganisms and the viruses that infect them are the most numerous biological entities on Earth and enclose its greatest biodiversity and genetic reservoir. With strength in their numbers, these microscopic organisms are major players in the cycles of energy and matter that sustain all life. Scientists have only scratched the surface of this vast microbial world through culture-dependent methods. Recent developments in generating metagenomes, large random samples of nucleic acid sequences isolated directly from the environment, are providing comprehensive portraits of the composition, structure, and functioning of microbial communities. Moreover, advances in metagenomic analysis have created the possibility of obtaining complete or nearly complete genome sequences from uncultured microorganisms, providing important means to study their biology, ecology, and evolution. Here we review some of the recent developments in the field of metagenomics, focusing on the discovery of genetic novelty and on methods for obtaining uncultured genome sequences, including through the recycling of previously published datasets. Moreover we discuss how metagenomics has become a core scientific tool to characterize eco-evolutionary patterns of microbial ecosystems, thus allowing us to simultaneously discover new microbes and study their natural communities. We conclude by discussing general guidelines and challenges for modeling the interactions between uncultured microorganisms and viruses based on the information contained in their genome sequences. These models will significantly advance our understanding of the functioning of microbial ecosystems and the roles of microbes in the environment.

[Landscape planning approaches for biodiversity conservation in agriculture].

Science.gov (United States)

Liu, Yun-hui; Li, Liang-tao; Yu, Zhen-rong

2008-11-01

Biodiversity conservation in agriculture not only relates to the sustainable development of agriculture, but also is an essential part of species conservation. In recent years, the landscape planning approach for biodiversity was highlighted instead of species-focused approach. In this paper, the landscape factors affecting the biodiversity in agriculture were reviewed, and the possible landscape approaches at three different scales for more efficient conservation of biodiversity in agro-landscape were suggested, including: (1) the increase of the proportion of natural or semi-natural habitats in agriculture, diversification of land use or crop pattern, and protection or construction of corridor at landscape level; (2) the establishment of non-cropping elements such as field margin at between-field level; and (3) the application of reasonable crop density, crop distribution pattern and rotation, and intercrop etc. at within-field level. It was suggested that the relevant policies for natural conservation, land use planning, and ecological compensation should be made to apply the landscape approaches for biodiversity conservation at larger scale.

Role of eucalypt and other planted forests in biodiversity conservation and the provision of biodiversity-related services

Science.gov (United States)

Eckehard G. Brockerhoff; Hervé Jactel; John A. Parrotta; Silvio F.B. Ferraz

2013-01-01

Forests provide important habitat for much of the world’s biodiversity, and the continuing global deforestation is one of our greatest environmental concerns. Planted forests represent an increasing proportion of the global forest area and partly compensate for the loss of natural forest in terms of forest area, habitat for biodiversity and ecological function. At...

Biogeographic patterns of microbial communities from different oil-contaminated fields in China

Energy Technology Data Exchange (ETDEWEB)

Liang, Yuting; Li, Guanghe [School of Environment, Tsinghua University (China); Zhou, Ji zhong [Institute for Environmental Genomics, Department of Botany and Microbiology, University of Oklahoma (United States)], email: jzhou@ou.edu

2011-07-01

Some striking biological challenges of the 21st century include linking biodiversity to ecosystem functions, information scaling, and linking genomics to ecology. This paper discusses the biogeographic patterns of microbial communities from various oil-contaminated fields in China. Two kinds of high throughput approaches are used, open format and closed format. Key differences between them are outlined. The GeoChip, or functional gene array (FGA) approach is presented. This is a high throughput tool for linking community structure to functions. Its main advantages are its high resolution and detecting functions. This approach was applied to soils, bioreactors and ground waters, among others. Issues related to specificity, sensitivity and quantification are listed. An overview of the microarray analysis is given. This is applied to the BP oil spill. 100 samples were chosen from representative oil fields to study the biogeographic patterns of microbial communities in China. The complete study is presented with the results.

Microbial stowaways: Addressing oil spill impacts and the artificial reef effect on deep-sea microbiomes

Science.gov (United States)

Hamdan, L. J.; Salerno, J. L.; Blackwell, C. A.; Little, B.; McGown, C.; Fitzgerald, L. A.; Damour, M.

2016-02-01

Shipwrecks enhance macro-biological diversity in the deep ocean, but, to date, studies have not explored the reef effect on deep-sea microbiological diversity. This is an important concept to address in a restoration framework, as microbial biogeochemical function impacts recruitment and adhesion of higher trophic levels on artificial reefs. In addition, microbial biofilms influence the preservation of shipwrecks through biologically mediated corrosion. Oil and gas-related activities have potential to disrupt the base of the reef trophic web; therefore, bacterial diversity and gene function at six shipwrecks (3 steel-hulled; 3 wood-hulled) in the northern Gulf of Mexico was investigated as part of the GOM-SCHEMA (Shipwreck Corrosion, Hydrocarbon Exposure, Microbiology, and Archaeology) project. Sites were selected based on proximity to the Deepwater Horizon spill's subsurface plume, depth, hull type, and existing archaeological data. Classification of taxa in sediments adjacent to and at distance from wrecks, in water, and on experimental steel coupons was used to evaluate how the presence of shipwrecks and spill contaminants in the deep biosphere influenced diversity. At all sites, and in all sample types, Proteobacteria were most abundant. Biodiversity was highest in surface sediments and in coupon biofilms adjacent to two steel-hulled wrecks in the study (Halo and Anona) and decreased with sediment depth and distance from the wrecks. Sequences associated with the iron oxidizing Mariprofundus genus were elevated at steel-hulled sites, indicating wreck-specific environmental selection. Despite evidence of the reef effect on microbiomes, bacterial composition was structured primarily by proximity to the spill and secondarily by hull material at all sites. This study provides the first evidence of an artificial reef effect on deep-sea microbial communities and suggests that biodiversity and function of primary colonizers of shipwrecks may be impacted by the spill.

The value of biodiversity

Directory of Open Access Journals (Sweden)

CJR. Alho

Full Text Available In addition to its intrinsic value (nature working as it is; species are the product of a long history of continuing evolution by means of ecological processes, and so they have the right to continued existence, biodiversity also plays a fundamental role as ecosystem services in the maintenance of natural ecological processes. The economic or utilitarian values of biodiversity rely upon the dependence of man on biodiversity; products that nature can provide: wood, food, fibers to make paper, resins, chemical organic products, genes as well as knowledge for biotechnology, including medicine and cosmetic sub-products. It also encompasses ecosystem services, such as climate regulation, reproductive and feeding habitats for commercial fish, some organisms that can create soil fertility through complex cycles and interactions, such as earthworms, termites and bacteria, in addition to fungi responsible for cycling nutrients like nitrogen, phosphorus and sulfur and making them available to plant absorption. These services are the benefits that people indirectly receive from natural ecosystem functions (air quality maintenance, regional climate, water quality, nutrient cycling, reproductive habitats of commercial fish, etc. with their related economic values.

Biodiversity losses and conservation responses in the Anthropocene.

Science.gov (United States)

Johnson, Christopher N; Balmford, Andrew; Brook, Barry W; Buettel, Jessie C; Galetti, Mauro; Guangchun, Lei; Wilmshurst, Janet M

2017-04-21

Biodiversity is essential to human well-being, but people have been reducing biodiversity throughout human history. Loss of species and degradation of ecosystems are likely to further accelerate in the coming years. Our understanding of this crisis is now clear, and world leaders have pledged to avert it. Nonetheless, global goals to reduce the rate of biodiversity loss have mostly not been achieved. However, many examples of conservation success show that losses can be halted and even reversed. Building on these lessons to turn the tide of biodiversity loss will require bold and innovative action to transform historical relationships between human populations and nature. Copyright © 2017, American Association for the Advancement of Science.

Response of microbial activities and diversity to PAHs contamination at coal tar contaminated land

Science.gov (United States)

Zhao, Xiaohui; Sun, Yujiao; Ding, Aizhong; Zhang, Dan; Zhang, Dayi

2015-04-01

Coal tar is one of the most hazardous and concerned organic pollutants and the main hazards are polycyclic aromatic hydrocarbons (PAHs). The indigenous microorganisms in soils are capable to degrade PAHs, with essential roles in biochemical process for PAHs natural attenuation. This study investigated 48 soil samples (from 8 depths of 6 boreholes) in Beijing coking and chemistry plant (China) and revealed the correlation between PAHs contamination, soil enzyme activities and microbial community structure, by 16S rRNA denaturing gradient gel electrophoresis (DGGE). At the site, the key contaminants were identified as naphthalene, acenaphthylene, acenaphthene, fluorene, phenanthrene and anthracene, and the total PAHs concentration ranged from 0.1 to 923.9 mg/kg dry soil. The total PAHs contamination level was positively correlated (pcatalase activities (0.554-6.230 mL 0.02 M KMnO4/g•h) and dehydrogenase activities (1.9-30.4 TF μg/g•h soil), showing the significant response of microbial population and degrading functions to the organic contamination in soils. The PAHs contamination stimulated the PAHs degrading microbes and promoted their biochemical roles in situ. The positive relationship between bacteria count and dehydrogenase activities (p<0.05) suggested the dominancy of PAHs degrading bacteria in the microbial community. More interestingly, the microbial community deterioration was uncovered via the decline of microbial biodiversity (richness from 16S rRNA DGGE) against total PAHs concentration (p<0.05). Our research described the spatial profiles of PAHs contamination and soil microbial functions at the PAHs heavily contaminated sites, offering deeper understanding on the roles of indigenous microbial community in natural attenuation process.

Effective climate action: why biodiversity matters | IDRC ...

International Development Research Centre (IDRC) Digital Library (Canada)

2018-05-22

May 22, 2018 ... Home · Resources · Perspectives ... This resource-dependency describes the relationship between ... involves holistic and integrated resource management strategies that ... This has been recognized in the Strategic Plan for Biodiversity ... as setting the global framework for priority actions on biodiversity.

The biodiversity conservation game with heterogeneous countries

NARCIS (Netherlands)

Winands, S.; Holm-Müller, K.; Weikard, H.P.

2013-01-01

Biodiversity is an essential resource, which we classify as conditionally-renewable. In order to achieve conservation and sustainable use of biodiversity virtually all nation states signed the United Nations Convention on Biological Diversity. In this paper we investigate how the heterogeneity of

The potential for biodiversity offsetting to fund effective invasive species control.

Science.gov (United States)

Norton, David A; Warburton, Bruce

2015-02-01

Compensating for biodiversity losses in 1 location by conserving or restoring biodiversity elsewhere (i.e., biodiversity offsetting) is being used increasingly to compensate for biodiversity losses resulting from development. We considered whether a form of biodiversity offsetting, enhancement offsetting (i.e., enhancing the quality of degraded natural habitats through intensive ecological management), can realistically secure additional funding to control biological invaders at a scale and duration that results in enhanced biodiversity outcomes. We suggest that biodiversity offsetting has the potential to enhance biodiversity values through funding of invasive species control, but it needs to meet 7 key conditions: be technically possible to reduce invasive species to levels that enhance native biodiversity; be affordable; be sufficiently large to compensate for the impact; be adaptable to accommodate new strategic and tactical developments while not compromising biodiversity outcomes; acknowledge uncertainties associated with managing pests; be based on an explicit risk assessment that identifies the cost of not achieving target outcomes; and include financial mechanisms to provide for in-perpetuity funding. The challenge then for conservation practitioners, advocates, and policy makers is to develop frameworks that allow for durable and effective partnerships with developers to realize the full potential of enhancement offsets, which will require a shift away from traditional preservation-focused approaches to biodiversity management. © 2014 Society for Conservation Biology.

PEMBANGUNAN DATABASE MANGROVE UNTUK BIODIVERSITY INFORMATICS BIOFARMAKA IPB

Directory of Open Access Journals (Sweden)

Yeni Herdiyeni

2014-12-01

Full Text Available Mangroves are a source of traditional medicine that can be used as a source of bioactive compounds. With the conversion of mangrove ecosystem into another designation led to the extinction of mangrove ecosystems. Therefore we need a good management of natural resources. In natural resource management, biodiversity information is needed to sustain the species utilization, exploration potential of the species and their biological and ecological monitoring, policy making, and for the development of biotechnology innovation. Research center of IPB Biopharmaca (Institute for Research and Community Services of Bogor Agricultural University has the mandate to conduct research from upstream to downstream in the medicinal field. This study develops Indonesian mangrove biodiversity database for Biodiversity Informatics. Biodiversity informatics (BI is the development of computer-based technologies for the management of biodiversity information. BI can be used to improve the knowledge management (knowledge management, exploration, analysis, synthesis, and interpretation of data ranging from the level of genomic biodiversity, species level to the ecosystem level. From the results of this study are expected data, information and knowledge of natural wealth mangroves can be managed properly so that the preservation of natural resources can be properly maintained and can be used in particular to the field of medicinal studies.

Grassland to woodland transitions: Dynamic response of microbial community structure and carbon use patterns

Science.gov (United States)

Creamer, Courtney A.; Filley, Timothy R.; Boutton, Thomas W.; Rowe, Helen I.

2016-06-01

Woodland encroachment into grasslands is a globally pervasive phenomenon attributed to land use change, fire suppression, and climate change. This vegetation shift impacts ecosystem services such as ground water allocation, carbon (C) and nutrient status of soils, aboveground and belowground biodiversity, and soil structure. We hypothesized that woodland encroachment would alter microbial community structure and function and would be related to patterns in soil C accumulation. To address this hypothesis, we measured the composition and δ13C values of soil microbial phospholipids (PLFAs) along successional chronosequences from C4-dominated grasslands to C3-dominated woodlands (small discrete clusters and larger groves) spanning up to 134 years. Woodland development increased microbial biomass, soil C and nitrogen (N) concentrations, and altered microbial community composition. The relative abundance of gram-negative bacteria (cy19:0) increased linearly with stand age, consistent with decreases in soil pH and/or greater rhizosphere development and corresponding increases in C inputs. δ13C values of all PLFAs decreased with time following woody encroachment, indicating assimilation of woodland C sources. Among the microbial groups, fungi and actinobacteria in woodland soils selectively assimilated grassland C to a greater extent than its contribution to bulk soil. Between the two woodland types, microbes in the groves incorporated relatively more of the relict C4-C than those in the clusters, potentially due to differences in below ground plant C allocation and organo-mineral association. Changes in plant productivity and C accessibility (rather than C chemistry) dictated microbial C utilization in this system in response to shrub encroachment.

Biodiversity influences plant productivity through niche-efficiency.

Science.gov (United States)

Liang, Jingjing; Zhou, Mo; Tobin, Patrick C; McGuire, A David; Reich, Peter B

2015-05-05

The loss of biodiversity is threatening ecosystem productivity and services worldwide, spurring efforts to quantify its effects on the functioning of natural ecosystems. Previous research has focused on the positive role of biodiversity on resource acquisition (i.e., niche complementarity), but a lack of study on resource utilization efficiency, a link between resource and productivity, has rendered it difficult to quantify the biodiversity-ecosystem functioning relationship. Here we demonstrate that biodiversity loss reduces plant productivity, other things held constant, through theory, empirical evidence, and simulations under gradually relaxed assumptions. We developed a theoretical model named niche-efficiency to integrate niche complementarity and a heretofore-ignored mechanism of diminishing marginal productivity in quantifying the effects of biodiversity loss on plant productivity. Based on niche-efficiency, we created a relative productivity metric and a productivity impact index (PII) to assist in biological conservation and resource management. Relative productivity provides a standardized measure of the influence of biodiversity on individual productivity, and PII is a functionally based taxonomic index to assess individual species' inherent value in maintaining current ecosystem productivity. Empirical evidence from the Alaska boreal forest suggests that every 1% reduction in overall plant diversity could render an average of 0.23% decline in individual tree productivity. Out of the 283 plant species of the region, we found that large woody plants generally have greater PII values than other species. This theoretical model would facilitate the integration of biological conservation in the international campaign against several pressing global issues involving energy use, climate change, and poverty.

Enhancement of biodiversity in energy farming: towards a functional approach

International Nuclear Information System (INIS)

Londo, M.; Dekker, J.

1997-01-01

When biomass is a substantial sustainable energy source, and special energy crops are grown on a large scale, land use and the environment of agriculture will be affected. Of these effects, biodiversity deserves special attention. The enhancement of biodiversity in energy farming via standard setting is the overall purpose of this project. In this study, the potential functionality of biodiversity in energy farming is proposed as a way of operationalising the rather abstract and broad concept of biodiversity. Functions of biodiversity are reviewed, and examples of functions are worked out, based on the current literature of nature in energy farming systems. (author)

Biodiversity and Edge Effects: An Activity in Landscape Ecology

Science.gov (United States)

Hart, Justin L.

2007-01-01

Biodiversity and the conservation of biodiversity have received increased attention during the last few decades and these topics have been implemented into many G7-12 science curricula. This work presents an exercise that may be used in middle and high school classrooms to help students better understand spatial aspects of biodiversity. The…

Does conservation on farmland contribute to halting the biodiversity decline?

Science.gov (United States)

Kleijn, David; Rundlöf, Maj; Scheper, Jeroen; Smith, Henrik G; Tscharntke, Teja

2011-09-01

Biodiversity continues to decline, despite the implementation of international conservation conventions and measures. To counteract biodiversity loss, it is pivotal to know how conservation actions affect biodiversity trends. Focussing on European farmland species, we review what is known about the impact of conservation initiatives on biodiversity. We argue that the effects of conservation are a function of conservation-induced ecological contrast, agricultural land-use intensity and landscape context. We find that, to date, only a few studies have linked local conservation effects to national biodiversity trends. It is therefore unknown how the extensive European agri-environmental budget for conservation on farmland contributes to the policy objectives to halt biodiversity decline. Based on this review, we identify new research directions addressing this important knowledge gap. Copyright © 2011 Elsevier Ltd. All rights reserved.

Hopping hotspots: global shifts in marine biodiversity.

Science.gov (United States)

Renema, W; Bellwood, D R; Braga, J C; Bromfield, K; Hall, R; Johnson, K G; Lunt, P; Meyer, C P; McMonagle, L B; Morley, R J; O'Dea, A; Todd, J A; Wesselingh, F P; Wilson, M E J; Pandolfi, J M

2008-08-01

Hotspots of high species diversity are a prominent feature of modern global biodiversity patterns. Fossil and molecular evidence is starting to reveal the history of these hotspots. There have been at least three marine biodiversity hotspots during the past 50 million years. They have moved across almost half the globe, with their timing and locations coinciding with major tectonic events. The birth and death of successive hotspots highlights the link between environmental change and biodiversity patterns. The antiquity of the taxa in the modern Indo-Australian Archipelago hotspot emphasizes the role of pre-Pleistocene events in shaping modern diversity patterns.

Mapping and Quantifying Terrestrial Vertebrate Biodiversity at ...

Science.gov (United States)

The ability to assess, report, map, and forecast functions of ecosystems is critical to our capacity to make informed decisions to maintain the sustainable nature of our environment. Because of the variability among living organisms and levels of organization (e.g. genetic, species, ecosystem), biodiversity has always been difficult to measure precisely, especially within a systematic manner and over multiple scales. In answer to this challenge, the U.S. Environmental Protection Agency has created a partnership with other Federal agencies, academic institutions, and Non-Governmental Organizations to develop the EnviroAtlas (https://www.epa.gov/enviroatlas), an online national Decision Support Tool that allows users to view and analyze the geographical description of the supply and demand for ecosystem services, as well as the drivers of change. As part of the EnviroAtlas, an approach has been developed that uses deductive habitat models for all terrestrial vertebrates of the conterminous United States and clusters them into biodiversity metrics that relate to ecosystem service-relevant categories. Metrics, such as species and taxon richness, have been developed and integrated with other measures of biodiversity. Collectively, these metrics provide a consistent scalable process from which to make geographic comparisons, provide thematic assessments, and to monitor status and trends in biodiversity. The national biodiversity component operates across approximatel

Biodiversity, conservation biology, and rational choice.

Science.gov (United States)

Frank, David

2014-03-01

This paper critically discusses two areas of Sahotra Sarkar's recent work in environmental philosophy: biodiversity and conservation biology and roles for decision theory in incorporating values explicitly in the environmental policy process. I argue that Sarkar's emphasis on the practices of conservation biologists, and especially the role of social and cultural values in the choice of biodiversity constituents, restricts his conception of biodiversity to particular practical conservation contexts. I argue that life scientists have many reasons to measure many types of diversity, and that biodiversity metrics could be value-free. I argue that Sarkar's emphasis on the limitations of normative decision theory is in tension with his statement that decision theory can "put science and ethics together." I also challenge his claim that multi-criteria decision tools lacking axiomatic foundations in preference and utility theory are "without a rational basis," by presenting a case of a simple "outranking" multi-criteria decision rule that can violate a basic normative requirement of preferences (transitivity) and ask whether there may nevertheless be contexts in which such a procedure might assist decision makers. Copyright © 2013 Elsevier Ltd. All rights reserved.

Protocols for 16S rDNA Array Analyses of Microbial Communities by Sequence-Specific Labeling of DNA Probes

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Knut Rudi

2003-01-01

Full Text Available Analyses of complex microbial communities are becoming increasingly important. Bottlenecks in these analyses, however, are the tools to actually describe the biodiversity. Novel protocols for DNA array-based analyses of microbial communities are presented. In these protocols, the specificity obtained by sequence-specific labeling of DNA probes is combined with the possibility of detecting several different probes simultaneously by DNA array hybridization. The gene encoding 16S ribosomal RNA was chosen as the target in these analyses. This gene contains both universally conserved regions and regions with relatively high variability. The universally conserved regions are used for PCR amplification primers, while the variable regions are used for the specific probes. Protocols are presented for DNA purification, probe construction, probe labeling, and DNA array hybridizations.

Biodiversity of frog haemoparasites from sub-tropical northern KwaZulu-Natal, South Africa

OpenAIRE

Edward C. Netherlands; Courtney A. Cook; Donnavan J.D. Kruger; Louis H. du Preez; Nico J. Smit

2015-01-01

Since South Africa boasts a high biodiversity of frog species, a multispecies haemoparasite survey was conducted by screening the blood from 29 species and 436 individual frogs. Frogs were collected at three localities in sub-tropical KwaZulu-Natal, a hotspot for frog diversity. Twenty per cent of the frogs were infected with at least one of five groups of parasites recorded. Intraerythrocytic parasites comprising Hepatozoon, Dactylosoma, and viral or bacterial organisms, as well as extracell...

Developing biodiversity indicators on a stakeholders' opinions basis: the gypsum industry Key Performance Indicators framework.

Science.gov (United States)

Pitz, Carline; Mahy, Grégory; Vermeulen, Cédric; Marlet, Christine; Séleck, Maxime

2016-07-01

This study aims to establish a common Key Performance Indicators (KPIs) framework for reporting about the gypsum industry biodiversity at the European level. In order to integrate different opinions and to reach a consensus framework, an original participatory process approach has been developed among different stakeholder groups: Eurogypsum, European and regional authorities, university scientists, consulting offices, European and regional associations for the conservation of nature, and the extractive industry. The strategy is developed around four main steps: (1) building of a maximum set of indicators to be submitted to stakeholders based on the literature (Focus Group method); (2) evaluating the consensus about indicators through a policy Delphi survey aiming at the prioritization of indicator classes using the Analytic Hierarchy Process method (AHP) and of individual indicators; (3) testing acceptability and feasibility through analysis of Environmental Impact Assessments (EIAs) and visits to three European quarries; (4) Eurogypsum final decision and communication. The resulting framework contains a set of 11 indicators considered the most suitable for all the stakeholders. Our KPIs respond to European legislation and strategies for biodiversity. The framework aims at improving sustainability in quarries and at helping to manage biodiversity as well as to allow the creation of coherent reporting systems. The final goal is to allow for the definition of the actual biodiversity status of gypsum quarries and allow for enhancing it. The framework is adaptable to the local context of each gypsum quarry.

Bats, Blood-Feeders and Biodiversity

DEFF Research Database (Denmark)

Bohmann, Kristine

DNA metabarcoding of environmental samples has rapidly become a valuable tool for ecological studies such as biodiversity and diet studies. To reveal the diversity in environmental samples such as soil, water, and faeces, this approach principally employs PCR amplification of environmental DNA...... minimising the occurrence of errors. Centered around metabarcoding dietary studies of bat droppings and leech gut contents, this continuous exploration and refinement is reflected in both the work and structure of this thesis. After a thesis introduction and two chapters on environmental DNA and biodiversity...

Microbial biodiversity of the liquid fraction of rumen content from lactating cows.

Science.gov (United States)

Sandri, M; Manfrin, C; Pallavicini, A; Stefanon, B

2014-04-01

Host and dietary interactions with the rumen microbiome can affect the efficacy of supplements, and their effect on the composition of the bacterial population is still unknown. A 16S rRNA metagenomic approach and Next-Generation Sequencing (NGS) technology were used to investigate the bacterial microbiome composition in the liquid fraction of the rumen content collected via stomach tubing. To investigate biodiversity, samples were taken from three groups of four lactating dairy cows given a supplement of either 50 g of potato protein (Ctrl group), or 50 g of lyophilized Saccharomyces cerevisiae (LY group) or 50 g of dried S. cerevisiae (DY group) in a potato protein support. Rumen samples were collected after 15 days of dietary treatments and milk production was similar between the three groups. Taxonomic distribution analysis revealed a prevalence of the Firmicutes phylum in all cows (79.76%) and a significantly (P<0.05) higher presence of the genus Bacillus in the DY group. Volatile fatty-acid concentration was not significantly different between groups, possibly because of relatively high inter-animal variability or limited effect of the treatments or both, and the correlation analysis with bacterial taxa showed significant associations, in particular between many Firmicutes genera and butyrate. Limited differences were observed between dietary treatments, but the lack of microbiome data before yeast administration does not allow to draw firm conclusions on the effect of dietary treatments.

Circumpolar Biodiversity Monitoring Programme coastal biodiversity monitoring background paper

Science.gov (United States)

McLennan, Donald; Anderson, Rebecca D.; Wegeberg, S.; Pettersvik Arvnes, Maria; Sergienko, Liudmila; Behe, Carolina; Moss-Davies, Pitseolak; Fritz, S.; Markon, Carl J.; Christensen, T.; Barry, T.; Price, C.

2016-01-01

In 2014, the United States (U.S.) and Canada agreed to act as co-lead countries for the initial development of the Coastal Expert Monitoring Group (CEMG) as part of the Circumpolar Biodiversity Monitoring Program (CBMP, www. cbmp.is) under the Arctic Council’s Conservation of Arctic Flora and Fauna (CAFF, www.caff.is) working group. The CAFF Management Board approved Terms of Reference for the CEMG in the spring of 2014. The primary goal of the CEMG is to develop a long term, integrated, multi-disciplinary, circumpolar Arctic Coastal Biodiversity Monitoring Plan (the Coastal Plan) that relies on science and Traditional Knowledge, and has direct and relevant application for communities, industry, government decision makers, and other users. In addition to the monitoring plan, the CAFF working group has asked the CBMP, and thus the CEMG, to develop an implementation plan that identifies timeline, costs, organizational structure and partners. This background paper provides a platform for the guidance for the development of the Coastal Plan and is produced by the CEMG with assistance from a number of experts in multiple countries.

An estimate of the recreational value of the Agulhas Plain, South Africa, with special reference to the value of plant biodiversity

Directory of Open Access Journals (Sweden)

Beatrice Conradie

2013-05-01

Full Text Available The Agulhas Plain is a remarkable recreational site which combines the attraction of a pristine marine environment with exceptional plant biodiversity, rural tranquillity and the novelty of being at the southernmost tip of Africa. The resource is a public good to which the market cannot assign a full value. This paper presents an estimated recreational value based on individual travel cost models and a sample of 370 visitors surveyed in 2010. Trip demands were estimated with zero truncated negative binomial models to account for over-dispersion. The study established a recreational value of R2.167 billion in 2010 prices for the site as a whole. By partitioning the sample into visitors who indicated having been attracted or not to the area by its nature and biodiversity, a net biodiversity value of R2 866 per trip was calculated. Allocated between marine and terrestrial resources based on the proportion of activities related to each type of resource, the value of plant biodiversity was estimated to be R2 268 per hectare in 2010to 2010 prices.

VBioindex: A Visual Tool to Estimate Biodiversity

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Dong Su Yu

2015-09-01

Full Text Available Biological diversity, also known as biodiversity, is an important criterion for measuring the value of an ecosystem. As biodiversity is closely related to human welfare and quality of life, many efforts to restore and maintain the biodiversity of species have been made by government agencies and non-governmental organizations, thereby drawing a substantial amount of international attention. In the fields of biological research, biodiversity is widely measured using traditional statistical indices such as the Shannon-Wiener index, species richness, evenness, and relative dominance of species. However, some biologists and ecologists have difficulty using these indices because they require advanced mathematical knowledge and computational techniques. Therefore, we developed VBioindex, a user-friendly program that is capable of measuring the Shannon-Wiener index, species richness, evenness, and relative dominance. VBioindex serves as an easy to use interface and visually represents the results in the form of a simple chart and in addition, VBioindex offers functions for long-term investigations of datasets using time-series analyses.

National forest inventory contributions to forest biodiversity monitoring

DEFF Research Database (Denmark)

Chirici, Cherardo; McRoberts, Ronald; Winter, Susanne

2012-01-01

. The primary international processes dealing with biodiversity and sustainable forest management, the Convention on Biological Diversity (CBD), Forest Europe, Streamlining European Biodiversity Indicators 2010 of the European Environmental Agency, and the Montréal Process, all include indicators related...... (ground vegetation and regeneration) NFIs should invest more in harmonization efforts. On the basis of these key findings, we recommend that NFIs should represent a main component of a future global biodiversity monitoring network as urgently requested by the CBD....

Sacred Groves: Myths, Beliefs, and Biodiversity Conservation—A Case Study from Western Himalaya, India

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Sushma Singh

2017-01-01

Full Text Available Religious and traditional beliefs, cultural mores, and practices play a crucial role in the conservation of environment and biodiversity. The present paper describes a case study of two sacred groves in Western Himalaya. Sacred groves (SGs are patches of land that are communally protected with religious zeal. A preliminary survey was conducted in these SGs to study their role in biodiversity conservation. The data collected included the general information regarding the SGs and the associated deity, nearest human habitation, access to them, and their floral and faunal diversity. Ethnomedicinal property of plants was collected from the indigenous communities. Many taboos are associated with both the SGs, which help in managing resources well through ritual representation. Different festivals are organized, where the local communities reaffirm their commitment to the forest and the deity. Sacred groves, in general, are a valuable tool of biodiversity conservation. But people’s changing attitudes, erosion of traditional beliefs, and human impact have caused degradation of sacred groves over the years. Their conservation would not be possible without the active participation of the local people. By improving their living standards and by giving benefits of conservation to them, long-term conservation goals in these SGs can be achieved.

Biodiversity and Resilience of Ecosystem Functions.

Science.gov (United States)

Oliver, Tom H; Heard, Matthew S; Isaac, Nick J B; Roy, David B; Procter, Deborah; Eigenbrod, Felix; Freckleton, Rob; Hector, Andy; Orme, C David L; Petchey, Owen L; Proença, Vânia; Raffaelli, David; Suttle, K Blake; Mace, Georgina M; Martín-López, Berta; Woodcock, Ben A; Bullock, James M

2015-11-01

Accelerating rates of environmental change and the continued loss of global biodiversity threaten functions and services delivered by ecosystems. Much ecosystem monitoring and management is focused on the provision of ecosystem functions and services under current environmental conditions, yet this could lead to inappropriate management guidance and undervaluation of the importance of biodiversity. The maintenance of ecosystem functions and services under substantial predicted future environmental change (i.e., their 'resilience') is crucial. Here we identify a range of mechanisms underpinning the resilience of ecosystem functions across three ecological scales. Although potentially less important in the short term, biodiversity, encompassing variation from within species to across landscapes, may be crucial for the longer-term resilience of ecosystem functions and the services that they underpin. Copyright © 2015 Elsevier Ltd. All rights reserved.

Biodiversity and the feel-good factor

DEFF Research Database (Denmark)

Dallimer, Martin; Irvine, Katherine N.; Skinner, Andrew M. J.

2012-01-01

Over half of the world's human population lives in cities, and for many, urban greenspaces are the only places where they encounter biodiversity. This is of particular concern because there is growing evidence that human well-being is enhanced by exposure to nature. However, the specific qualities...... of greenspaces that offer the greatest benefits remain poorly understood. One possibility is that humans respond positively to increased levels of biodiversity. Here, we demonstrate the lack of a consistent relationship between actual plant, butterfly, and bird species richness and the psychological well......-being of urban greenspace visitors. instead, well-being shows a positive relationship with the richness that the greenspace users perceived to be present. One plausible explanation for this discrepancy, which we investigate, is that people generally have poor biodiversity-identification skills. The apparent...

Biodiversity analysis in the digital era

Science.gov (United States)

2016-01-01

This paper explores what the virtual biodiversity e-infrastructure will look like as it takes advantage of advances in ‘Big Data’ biodiversity informatics and e-research infrastructure, which allow integration of various taxon-level data types (genome, morphology, distribution and species interactions) within a phylogenetic and environmental framework. By overcoming the data scaling problem in ecology, this integrative framework will provide richer information and fast learning to enable a deeper understanding of biodiversity evolution and dynamics in a rapidly changing world. The Atlas of Living Australia is used as one example of the advantages of progressing towards this future. Living in this future will require the adoption of new ways of integrating scientific knowledge into societal decision making. This article is part of the themed issue ‘From DNA barcodes to biomes’. PMID:27481789

Microbial metatranscriptomics in a permanent marine oxygen minimum zone

OpenAIRE

Stewart, Frank J.; Ulloa, Osvaldo; DeLong, Edward

2010-01-01

Simultaneous characterization of taxonomic composition, metabolic gene content and gene expression in marine oxygen minimum zones (OMZs) has potential to broaden perspectives on the microbial and biogeochemical dynamics in these environments. Here, we present a metatranscriptomic survey of microbial community metabolism in the Eastern Tropical South Pacific OMZ off northern Chile. Community RNA was sampled in late austral autumn from four depths (50, 85, 110, 200 m) extending across the oxycl...

Intentional systems management: managing forests for biodiversity.

Science.gov (United States)

A.B. Carey; B.R. Lippke; J. Sessions

1999-01-01

Conservation of biodiversity provides for economic, social, and environmental sustainability. Intentional management is designed to manage conflicts among groups with conflicting interests. Our goal was to ascertain if intentional management and principles of conservation of biodiversity could be combined into upland and riparian forest management strategies that would...

Biodiversity analysis of vegetation on the Nevada Test Site

International Nuclear Information System (INIS)

Ostler, W. K.; Hansen, D. J.

2000-01-01

The Nevada Test Site (NTS), located in south-central Nevada, encompasses approximately 3,500 square kilometers and straddles two major North American deserts, Mojave and Great Basin. Transitional areas between the two desert types have been created by gradients in elevation, precipitation, temperature, and soils. From 1996 to 1998, more than 1,500 ecological landform units were sampled at the NTS for numerous biotic and abiotic parameters. The data provide a basis for spatial evaluations of biodiversity over landscape scales at the NTS. Biodiversity maps (species richness vs. species abundance) have been produced. Differences in biodiversity among ecoregions and vegetation alliances are presented. Spatial distribution maps of species' presence and abundance provide evidence of where transition zones occur and the resulting impact on biodiversity. The influences of abiotic factors, such as elevation, soil, and precipitation, on biodiversity are assessed

Microbial diversity in firework chemical exposed soil and water samples collected in Virudhunagar district, Tamil Nadu, India.

Science.gov (United States)

Dhasarathan, P; Theriappan, P; Ashokraja, C

2010-03-01

Microbial diversity of soil and water samples collected from pyrochemicals exposed areas of Virdhunagar district (Tamil Nadu, India) was studied. Soil and water samples from cultivable area, waste land and city area of the same region were also studied for a comparative acount. There is a remarkable reduction in total heterotrophic bacterial population (THB) in pyrochemicals exposed soil and water samples (42 × 10(4) CFU/g and 5.6 × 10(4) CFU/ml respectively), compared to the THB of cultivable area soil and water samples (98 × 10(7) CFU/g and 38.6 × 10(7) CFU/ml). The generic composition the THB of the pyrochemicals exposed samples too exhibited considerable change compared to other samples. Pseudomonas sp. was the predominant one (41.6%) followed by Achromobacter sp. (25%) in pyrochemical exposed soil and Pseudomonas sp. was the predominant one (25%) in pyrochemical exposed water samples followed by Bacillus sp. (25%) and Micrococcus sp. (16.6%). It was observed that Cornybacterium sp. and Micrococcus sp. were absent completely in pyrochemical exposed soil and Achromobacter sp. was missing in the pyrochemical exposed water samples, which were present in the other samples. The outcome of this study clearly demonstrates that pollutants such as chemicals used in pyrotechniques affect the microbial biodiversity and suitable measures have to be taken to control the pollution level and to save biodiversity.

The relationships between biodiversity and ecosystem services and the effects of grazing cessation in semi-natural grasslands

Directory of Open Access Journals (Sweden)

S. Wehn

2018-04-01

Full Text Available Land use change can affect biodiversity, and this has an impact on ecosystem services (ESs, but the relationships between biodiversity and ESs are complex and poorly understood. Biodiversity is declining due to the abandonment of extensively grazed semi-natural grasslands.We therefore aim to explore relationships between biodiversity and ESs provided by extensively managed semi-natural grasslands. Focusing on vascular plant species richness, as well as the ESs fodder quantity, quality, and stability, allergy control, climate regulation, nutrient cycling, pollination, and aesthetic appreciation, we carried out botanical field surveys of 28 paired extensively grazed and abandoned semi-natural grassland plots, with four subplots of 4 m2 in each plot. The management of the semi-natural grasslands is and has been at low intensity. We calculated the influence of abandonment on the ES indicators, measured the correlation between the biodiversity measure of vascular plant species richness and ES indicators, and finally determined how the relationships between plant species richness and the ES indicators were affected by the cessation of the extensive management.ES indicators are often, but not always, positively correlated with species richness. Cessation of extensive grazing has both negative and positive effects on ES indicators but the relationships between species richness and ES indicators are often different in extensively managed and abandoned semi-natural grasslands. The relationships between species richness and ES indicators are less pronounced in the extensively managed semi-natural grassland than for the abandoned. One possible reason for this outcome is high functional redundancy in the extensively managed semi-natural grasslands.

Status and strategies for marine biodiversity of Goa

Digital Repository Service at National Institute of Oceanography (India)

Untawale, A.G.

The status of marine biodiversity and factors responsible for the degradation and loss of marine biodiversity are discussed. Goa has abundant marine wealth. Phytoplankton, marine algae, manglicolous fungi, seagrasses, mangrove flora and other...

Biodiversity at risk under future cropland expansion and intensification.

Science.gov (United States)

Kehoe, Laura; Romero-Muñoz, Alfredo; Polaina, Ester; Estes, Lyndon; Kreft, Holger; Kuemmerle, Tobias

2017-08-01

Agriculture is the leading driver of biodiversity loss. However, its future impact on biodiversity remains unclear, especially because agricultural intensification is often neglected, and high path-dependency is assumed when forecasting agricultural development-although the past suggests that shock events leading to considerable agricultural change occur frequently. Here, we investigate the possible impacts on biodiversity of pathways of expansion and intensification. Our pathways are not built to reach equivalent production targets, and therefore they should not be directly compared; they instead highlight areas at risk of high biodiversity loss across the entire option space of possible agricultural change. Based on an extensive database of biodiversity responses to agriculture, we find 30% of species richness and 31% of species abundances potentially lost because of agricultural expansion across the Amazon and Afrotropics. Only 21% of high-risk expansion areas in the Afrotropics overlap with protected areas (compared with 43% of the Neotropics). Areas at risk of biodiversity loss from intensification are found in India, Eastern Europe and the Afromontane region (7% species richness, 13% abundance loss). Many high-risk regions are not adequately covered by conservation prioritization schemes, and have low national conservation spending and high agricultural growth. Considering rising agricultural demand, we highlight areas where timely land-use planning may proactively mitigate biodiversity loss.

Habitat Fragmentation can Modulate Drought Effects on the Plant-soil-microbial System in Mediterranean Holm Oak (Quercus ilex) Forests.

Science.gov (United States)

Flores-Rentería, Dulce; Curiel Yuste, Jorge; Rincón, Ana; Brearley, Francis Q; García-Gil, Juan Carlos; Valladares, Fernando

2015-05-01

Ecological transformations derived from habitat fragmentation have led to increased threats to above-ground biodiversity. However, the impacts of forest fragmentation on soils and their microbial communities are not well understood. We examined the effects of contrasting fragment sizes on the structure and functioning of soil microbial communities from holm oak forest patches in two bioclimatically different regions of Spain. We used a microcosm approach to simulate the annual summer drought cycle and first autumn rainfall (rewetting), evaluating the functional response of a plant-soil-microbial system. Forest fragment size had a significant effect on physicochemical characteristics and microbial functioning of soils, although the diversity and structure of microbial communities were not affected. The response of our plant-soil-microbial systems to drought was strongly modulated by the bioclimatic conditions and the fragment size from where the soils were obtained. Decreasing fragment size modulated the effects of drought by improving local environmental conditions with higher water and nutrient availability. However, this modulation was stronger for plant-soil-microbial systems built with soils from the northern region (colder and wetter) than for those built with soils from the southern region (warmer and drier) suggesting that the responsiveness of the soil-plant-microbial system to habitat fragmentation was strongly dependent on both the physicochemical characteristics of soils and the historical adaptation of soil microbial communities to specific bioclimatic conditions. This interaction challenges our understanding of future global change scenarios in Mediterranean ecosystems involving drier conditions and increased frequency of forest fragmentation.

Deciphering microbial interactions and detecting keystone species with co-occurrence networks

Directory of Open Access Journals (Sweden)

David eBerry

2014-05-01

Full Text Available Co-occurrence networks produced from microbial survey sequencing data are frequently used to identify interactions between community members. While this approach has potential to reveal ecological processes, it has been insufficiently validated due to the technical limitations inherent in studying complex microbial ecosystems. Here, we simulate multi-species microbial communities with known interaction patterns using generalized Lotka-Volterra dynamics, construct co-occurrence networks, and evaluate how well networks reveal the underlying interactions, and how experimental and ecological parameters can affect network inference and interpretation. We find that co-occurrence networks can recapitulate interaction networks under certain conditions, but that they lose interpretability when the effects of habitat filtering become significant. We demonstrate that networks suffer from local hot spots of spurious correlation in the neighborhood of hub species that engage in many interactions. We also identify topological features associated with keystone species in co-occurrence networks. This study provides a substantiated framework to guide environmental microbiologists in the construction and interpretation of co-occurrence networks from microbial survey datasets.

Deciphering microbial interactions and detecting keystone species with co-occurrence networks.

Science.gov (United States)

Berry, David; Widder, Stefanie

2014-01-01

Co-occurrence networks produced from microbial survey sequencing data are frequently used to identify interactions between community members. While this approach has potential to reveal ecological processes, it has been insufficiently validated due to the technical limitations inherent in studying complex microbial ecosystems. Here, we simulate multi-species microbial communities with known interaction patterns using generalized Lotka-Volterra dynamics. We then construct co-occurrence networks and evaluate how well networks reveal the underlying interactions and how experimental and ecological parameters can affect network inference and interpretation. We find that co-occurrence networks can recapitulate interaction networks under certain conditions, but that they lose interpretability when the effects of habitat filtering become significant. We demonstrate that networks suffer from local hot spots of spurious correlation in the neighborhood of hub species that engage in many interactions. We also identify topological features associated with keystone species in co-occurrence networks. This study provides a substantiated framework to guide environmental microbiologists in the construction and interpretation of co-occurrence networks from microbial survey datasets.

The role of trade-offs in biodiversity conservation planning: linking ...

Indian Academy of Sciences (India)

A recent whole-country planning study for Papua New Guinea illustrates the importance of complementarity-based trade-offs in determining priority areas for biodiversity conservation, and for designing economic instruments such as biodiversity levies and offsets. Two international biodiversity programs provide important ...

Baltic Sea biodiversity status vs. cumulative human pressures

DEFF Research Database (Denmark)

Andersen, Jesper H.; Halpern, Benjamin S.; Korpinen, Samuli

2015-01-01

Abstract Many studies have tried to explain spatial and temporal variations in biodiversity status of marine areas from a single-issue perspective, such as fishing pressure or coastal pollution, yet most continental seas experience a wide range of human pressures. Cumulative impact assessments have...... been developed to capture the consequences of multiple stressors for biodiversity, but the ability of these assessments to accurately predict biodiversity status has never been tested or ground-truthed. This relationship has similarly been assumed for the Baltic Sea, especially in areas with impaired...... status, but has also never been documented. Here we provide a first tentative indication that cumulative human impacts relate to ecosystem condition, i.e. biodiversity status, in the Baltic Sea. Thus, cumulative impact assessments offer a promising tool for informed marine spatial planning, designation...

Re-thinking on the role of business in biodiversity conservation

OpenAIRE

Barna, Cristina

2008-01-01

Today we face the challenge of building biodiversity business. There is a need to develop new business models and market mechanisms for biodiversity conservation, while also raising awareness and persuading the public and policy-makers that biodiversity can be conserved on a commercial basis. In this context the present paper is analyzing the arise of a new economic concept ‘business biodiversity’, focusing on the strategic importance of biodiversity for business and also presenting some busi...

Biodiversity recovery following delta-wide measures for flood risk reduction.

Science.gov (United States)

Straatsma, Menno W; Bloecker, Alexandra M; Lenders, H J Rob; Leuven, Rob S E W; Kleinhans, Maarten G

2017-11-01

Biodiversity declined markedly over the past 150 years, with the biodiversity loss in fluvial ecosystems exceeding the global average. River restoration now aims at flood safety while enhancing biodiversity and has had success locally. However, at the scale of large river distributaries, the recovery remained elusive. We quantify changes in biodiversity of protected and endangered species over 15 years of river restoration in the embanked floodplains of an entire river delta. We distinguish seven taxonomic groups and four functional groups in more than 2 million field observations of species presence. Of all 179 fluvial floodplain sections examined, 137 showed an increase in biodiversity, particularly for fast-spreading species. Birds and mammals showed the largest increase, that is, +13 and +3 percentage point saturation of their potential based on habitat. This shows that flood risk interventions were successfully combined with enhancement of biodiversity, whereas flood stage decreased (-24 cm).

The woodrat gut microbiota as an experimental system for understanding microbial metabolism of dietary toxins

Directory of Open Access Journals (Sweden)

Kevin D. Kohl

2016-07-01

Full Text Available The microbial communities inhabiting the alimentary tracts of mammals, particularly those of herbivores, are estimated to be one of the densest microbial reservoirs on Earth. The significance of these gut microbes in influencing the physiology, ecology and evolution of their hosts is only beginning to be realized. To understand the microbiome of herbivores with a focus on nutritional ecology, while evaluating the roles of host evolution and environment in sculpting microbial diversity, we have developed an experimental system consisting of the microbial communities of several species of herbivorous woodrats (genus Neotoma that naturally feed on a variety of dietary toxins. We designed this system to investigate the long-standing, but experimentally neglected hypothesis that ingestion of toxic diets by herbivores is facilitated by the gut microbiota. Like several other rodent species, the woodrat stomach has a sacculated, nongastric foregut portion. We have documented a dense and diverse community of microbes in the woodrat foregut, with several genera potentially capable of degrading dietary toxins and/or playing a role in stimulating hepatic detoxification enzymes of the host. The biodiversity of these gut microbes appears to be a function of host evolution, ecological experience and diet, such that dietary toxins increase microbial diversity in hosts with experience with these toxins while novel toxins depress microbial diversity. These microbial communities are critical to the ingestion of a toxic diet as reducing the microbial community with antibiotics impairs the host’s ability to feed on dietary toxins. Furthermore, the detoxification capacity of gut microbes can be transferred from Neotoma both intra and interspecifically to naïve animals that lack ecological and evolutionary history with these toxins. In addition to advancing our knowledge of complex host-microbes interactions, this system holds promise for identifying microbes that

Climate change: potential implications for Ireland's biodiversity

Science.gov (United States)

Donnelly, Alison

2018-03-01

A national biodiversity and climate change adaptation plan is being developed for Ireland by the Department of Communications, Climate Action, and Environment. In order to inform such a plan, it was necessary to review and synthesize some of the recent literature pertaining to the impact of climate change on biodiversity in Ireland. Published research on this topic fell within three broad categories: (i) changes in the timing of life-cycle events (phenology) of plants, birds, and insects; (ii) changes in the geographic range of some bird species; and (iii) changes in the suitable climatic zones of key habitats and species. The synthesis revealed evidence of (i) a trend towards earlier spring activity of plants, birds, and insects which may result in a change in ecosystem function; (ii) an increase in the number of bird species; and (iii) both increases and decreases in the suitable climatic area of key habitats and species, all of which are expected to impact Ireland's future biodiversity. This process identified data gaps and limitations in available information both of which could be used to inform a focused research strategy. In addition, it raises awareness of the potential implications of climate change for biodiversity in Ireland and elsewhere and demonstrates the need for biodiversity conservation plans to factor climate change into future designs.

Geography of conservation spending, biodiversity, and culture.

Science.gov (United States)

McClanahan, T R; Rankin, P S

2016-10-01

We used linear and multivariate models to examine the associations between geography, biodiversity, per capita economic output, national spending on conservation, governance, and cultural traits in 55 countries. Cultural traits and social metrics of modernization correlated positively with national spending on conservation. The global distribution of this spending culture was poorly aligned with the distribution of biodiversity. Specifically, biodiversity was greater in the tropics where cultures tended to spend relatively less on conservation and tended to have higher collectivism, formalized and hierarchical leadership, and weaker governance. Consequently, nations lacking social traits frequently associated with modernization, environmentalism, and conservation spending have the largest component of Earth's biodiversity. This has significant implications for setting policies and priorities for resource management given that biological diversity is rapidly disappearing and cultural traits change slowly. Therefore, we suggest natural resource management adapt to and use characteristics of existing social organization rather than wait for or promote social values associated with conservation spending. Supporting biocultural traditions, engaging leaders to increase conservation commitments, cross-national efforts that complement attributes of cultures, and avoiding interference with nature may work best to conserve nature in collective and hierarchical societies. Spending in modernized nations may be a symbolic response to a symptom of economic development and environmental degradation, and here conservation actions need to ensure that biodiversity is not being lost. © 2016 Society for Conservation Biology.

Biodiversity in environmental assessment-current practice and tools for prediction

International Nuclear Information System (INIS)

Gontier, Mikael; Balfors, Berit; Moertberg, Ulla

2006-01-01

Habitat loss and fragmentation are major threats to biodiversity. Environmental impact assessment and strategic environmental assessment are essential instruments used in physical planning to address such problems. Yet there are no well-developed methods for quantifying and predicting impacts of fragmentation on biodiversity. In this study, a literature review was conducted on GIS-based ecological models that have potential as prediction tools for biodiversity assessment. Further, a review of environmental impact statements for road and railway projects from four European countries was performed, to study how impact prediction concerning biodiversity issues was addressed. The results of the study showed the existing gap between research in GIS-based ecological modelling and current practice in biodiversity assessment within environmental assessment

Designing Biodiversity Friendly Communities. Liveable Cities Forum: Key outcomes and findings

Energy Technology Data Exchange (ETDEWEB)

NONE

2011-10-15

The Liveable Cities Forum, held 21-22 August in Montreal Canada, created a platform to share best practices on biodiversity management and application at the local level. The Forum also highlighted the importance of partnership building and presented instruments (such as the Singapore Index on Cities' Biodiversity) that help to move the biodiversity agenda forward. A findings report on the Forum has recently been released, offering panel and workshop summaries, key outcomes, and a scope of future opportunities for local governments. Some of the key outcomes are as follows: Biodiversity protection is at its core a local issue, and in order to mitigate biodiversity loss in cities, there is an undeniable need for local governments to come together and work through solutions collectively; Urban centers influence local, regional and global biodiversity. Therefore, it is important that cities con-serve their local biodiversity through the sustainable use of resources beyond their borders; It is important for municipalities to engage and partner with local residents, academic institutions, and organizations, not only to have a finger on the pulse, but also to have local allies and secure long-term support; and Integrated policies help drive action. To effectively mainstream biodiversity at the local level, it is important to incorporate biodiversity considerations into multiple departments, plans and programs.

Fourteenth-Sixteenth Microbial Genomics Conference-2006-2008

Energy Technology Data Exchange (ETDEWEB)

Miller, Jeffrey H

2011-04-18

The concept of an annual meeting on the E. coli genome was formulated at the Banbury Center Conference on the Genome of E. coli in October, 1991. The first meeting was held on September 10-14, 1992 at the University of Wisconsin, and this was followed by a yearly series of meetings, and by an expansion to include The fourteenth meeting took place September 24-28, 2006 at Lake Arrowhead, CA, the fifteenth September 16-20, 2007 at the University of Maryland, College Park, MD, and the sixteenth September 14-18, 2008 at Lake Arrowhead. The full program for the 16th meeting is attached. There have been rapid and exciting advances in microbial genomics that now make possible comparing large data sets of sequences from a wide variety of microbial genomes, and from whole microbial communities. Examining the “microbiomes”, the living microbial communities in different host organisms opens up many possibilities for understanding the landscape presented to pathogenic microorganisms. For quite some time there has been a shifting emphasis from pure sequence data to trying to understand how to use that information to solve biological problems. Towards this end new technologies are being developed and improved. Using genetics, functional genomics, and proteomics has been the recent focus of many different laboratories. A key element is the integration of different aspects of microbiology, sequencing technology, analysis techniques, and bioinformatics. The goal of these conference is to provide a regular forum for these interactions to occur. While there have been a number of genome conferences, what distinguishes the Microbial Genomics Conference is its emphasis on bringing together biology and genetics with sequencing and bioinformatics. Also, this conference is the longest continuing meeting, now established as a major regular annual meeting. In addition to its coverage of microbial genomes and biodiversity, the meetings also highlight microbial communities and the use of

Localized Agri-Food Systems and Biodiversity

Directory of Open Access Journals (Sweden)

Bolette Bele

2018-02-01

Full Text Available Interest in localized agri-food systems has grown significantly in recent years. They are associated with several benefits and are seen as important for rural development. An important share of the academic debate addresses the contribution of localized food systems to the current and/or future sustainability of agriculture. Sustainability is defined in several ways, but many scholars recognize that sustainability can only be achieved by a combination of socio-economic, cultural, and environmental aspects. However, the attributes and indicators used for sustainability analyses also differ. Biodiversity is, for instance, often not included in analyses of environmental sustainability even if biodiversity is of crucial importance for longer-term ecological sustainability. To contribute to the debate about the importance of localized food production for sustainability from the environmental point of view, specifically with regard to biodiversity, this is therefore discussed based on the results of several studies presented in this paper. The studies focus on Nordic low-intensity livestock systems related to species-rich semi-natural grasslands. All the studies show that low-intensive agriculture and use of semi-natural grasslands may play an important role in maintaining biodiversity on both small and large scales. They also show that milk and dairy products from free-ranging livestock in heterogeneous landscapes with semi-natural grasslands may have a unique quality associated with local grazing resources. Thus, producers can combine production of food of documented high nutritional and gastronomic value with maintenance of biodiversity, i.e., localized agri-food production based on low-intensive agriculture systems and semi-natural grasslands may be a win-win recipe for both farmers and the society.

African Traditional Knowledge Systems and Biodiversity Management

African Journals Online (AJOL)

There is a link between African Traditional Knowledge Systems and the management of Biodiversity. These have been passed over from one generation to the next through oral tradition. The lack of documentation of these systems of managing biodiversity has led to the existence of a gap between the scientifi cally based ...

Problems of Biodiversity Management in Indonesia

Directory of Open Access Journals (Sweden)

OKID PARAMA ASTIRIN

2000-01-01

Full Text Available Indonesia is an archipelago of 17.508 islands with land width of 1.9 millions km2 and sea of 3.1 millions km2, having many types of habitat and become one of biodiversity center in the world. There are about 28.000 plants species, 350.000 animals species and about 10.000 microbes predicted lived endemically in Indonesia. The country that represents only 1.32% of the world having 10% of total flowering plants, 12% of mammals, 16% reptiles and amphibian, 17% birds, 25% fishes and 15% of insects in the world. Most of the biodiversity were not investigated and utilized yet. The direct use of the biodiversity is not any risk, and in addition, between government, society and industries sometime does not have the same view and attitude. Habitat destruction and over-exploitation have caused Indonesia having long list of endangered species including 126 birds, 63 mammals and 21 reptiles. The extinction of some species occurred just few years ago like trulek jawa (Vanellus macropterus, insectivore bird (Eutrichomyias rowleyi in North Sulawesi, and tiger sub species (Panthera tigris in Java and Bali. It seems that now is time for all Indonesians to introspect and look for the way that can be used for preserving biodiversity.

Parasitism and the biodiversity-functioning relationship

Science.gov (United States)

Frainer, André; McKie, Brendan G.; Amundsen, Per-Arne; Knudsen, Rune; Lafferty, Kevin D.

2018-01-01

Biodiversity affects ecosystem functioning.Biodiversity may decrease or increase parasitism.Parasites impair individual hosts and affect their role in the ecosystem.Parasitism, in common with competition, facilitation, and predation, could regulate BD-EF relationships.Parasitism affects host phenotypes, including changes to host morphology, behavior, and physiology, which might increase intra- and interspecific functional diversity.The effects of parasitism on host abundance and phenotypes, and on interactions between hosts and the remaining community, all have potential to alter community structure and BD-EF relationships.Global change could facilitate the spread of invasive parasites, and alter the existing dynamics between parasites, communities, and ecosystems.Species interactions can influence ecosystem functioning by enhancing or suppressing the activities of species that drive ecosystem processes, or by causing changes in biodiversity. However, one important class of species interactions – parasitism – has been little considered in biodiversity and ecosystem functioning (BD-EF) research. Parasites might increase or decrease ecosystem processes by reducing host abundance. Parasites could also increase trait diversity by suppressing dominant species or by increasing within-host trait diversity. These different mechanisms by which parasites might affect ecosystem function pose challenges in predicting their net effects. Nonetheless, given the ubiquity of parasites, we propose that parasite–host interactions should be incorporated into the BD-EF framework.

Temperature impacts on deep-sea biodiversity.

Science.gov (United States)

Yasuhara, Moriaki; Danovaro, Roberto

2016-05-01

Temperature is considered to be a fundamental factor controlling biodiversity in marine ecosystems, but precisely what role temperature plays in modulating diversity is still not clear. The deep ocean, lacking light and in situ photosynthetic primary production, is an ideal model system to test the effects of temperature changes on biodiversity. Here we synthesize current knowledge on temperature-diversity relationships in the deep sea. Our results from both present and past deep-sea assemblages suggest that, when a wide range of deep-sea bottom-water temperatures is considered, a unimodal relationship exists between temperature and diversity (that may be right skewed). It is possible that temperature is important only when at relatively high and low levels but does not play a major role in the intermediate temperature range. Possible mechanisms explaining the temperature-biodiversity relationship include the physiological-tolerance hypothesis, the metabolic hypothesis, island biogeography theory, or some combination of these. The possible unimodal relationship discussed here may allow us to identify tipping points at which on-going global change and deep-water warming may increase or decrease deep-sea biodiversity. Predicted changes in deep-sea temperatures due to human-induced climate change may have more adverse consequences than expected considering the sensitivity of deep-sea ecosystems to temperature changes. © 2014 Cambridge Philosophical Society.

Reconciling biodiversity conservation and marine capture fisheries production

DEFF Research Database (Denmark)

Brander, Keith

2010-01-01

Pathways for moving towards the goals of biodiversity conservation and food security in terrestrial systems include the application of trait-based ecology to develop highly productive agroecosystems with less negative effects on biodiversity. Although marine ecosystems have been impacted by human...... activity over several centuries, the changes have been unintentional and undirected; we have not learned how to enhance food production from the sea and are reliant, as hunter-gatherers, on natural production. The goals of maximising fisheries production and maintaining biodiversity may be difficult...

Molecular biodiversity of Red Sea demosponges

KAUST Repository

Erpenbeck, Dirk

2016-01-07

Sponges are important constituents of coral reef ecosystems, including those around the Arabian Peninsula. Despite their importance, our knowledge on demosponge diversity in this area is insufficient to recognize, for example, faunal changes caused by anthropogenic disturbances. We here report the first assessment of demosponge molecular biodiversity from Arabia, with focus on the Saudi Arabian Red Sea, based on mitochondrial and nuclear ribosomal molecular markers gathered in the framework of the Sponge Barcoding Project. We use a rapid molecular screening approach on Arabian demosponge collections and analyze results in comparison against published material in terms of biodiversity. We use a variable region of 28S rDNA, applied for the first time in the assessment of demosponge molecular diversity. Our data constitutes a solid foundation for a future more comprehensive understanding of sponge biodiversity of the Red Sea and adjacent waters.

Molecular biodiversity of Red Sea demosponges

KAUST Repository

Erpenbeck, Dirk; Voigt, Oliver; Al-Aidaroos, Ali M.; Berumen, Michael L.; Bü ttner, Gabriele; Catania, Daniela; Guirguis, Adel Naguib; Paulay, Gustav; Schä tzle, Simone; Wö rheide, Gert

2016-01-01

Sponges are important constituents of coral reef ecosystems, including those around the Arabian Peninsula. Despite their importance, our knowledge on demosponge diversity in this area is insufficient to recognize, for example, faunal changes caused by anthropogenic disturbances. We here report the first assessment of demosponge molecular biodiversity from Arabia, with focus on the Saudi Arabian Red Sea, based on mitochondrial and nuclear ribosomal molecular markers gathered in the framework of the Sponge Barcoding Project. We use a rapid molecular screening approach on Arabian demosponge collections and analyze results in comparison against published material in terms of biodiversity. We use a variable region of 28S rDNA, applied for the first time in the assessment of demosponge molecular diversity. Our data constitutes a solid foundation for a future more comprehensive understanding of sponge biodiversity of the Red Sea and adjacent waters.

Finding common ground for biodiversity and ecosystem services

CSIR Research Space (South Africa)

Reyers, B

2012-05-01

Full Text Available Recently, some members of the conservation community have used ecosystem services as a strategy to conserve biodiversity. Others in the community have criticized this strategy as a distraction from the mission of biodiversity conservation...

Plantation forests and biodiversity: oxymoron or opportunity?

Science.gov (United States)

Eckehard G. Brockerhoff; Hervé Jactel; John A. Parrotta; Christopher Quine; Jeffrey Sayer

2008-01-01

Losses of natural and semi-natural forests, mostly to agriculture, are a significant concern for biodiversity. Against this trend, the area of intensively managed plantation forests increases, and there is much debate about the implications for biodiversity. We provide a comprehensive review of the function of plantation forests as habitat compared with other land...

Sparing land for biodiversity at multiple spatial scales

Directory of Open Access Journals (Sweden)

Johan eEkroos

2016-01-01

Full Text Available A common approach to the conservation of farmland biodiversity and the promotion of multifunctional landscapes, particularly in landscapes containing only small remnants of non-crop habitats, has been to maintain landscape heterogeneity and reduce land-use intensity. In contrast, it has recently been shown that devoting specific areas of non-crop habitats to conservation, segregated from high-yielding farmland (‘land sparing’, can more effectively conserve biodiversity than promoting low-yielding, less intensively managed farmland occupying larger areas (‘land sharing’. In the present paper we suggest that the debate over the relative merits of land sparing or land sharing is partly blurred by the differing spatial scales at which it is suggested that land sparing should be applied. We argue that there is no single correct spatial scale for segregating biodiversity protection and commodity production in multifunctional landscapes. Instead we propose an alternative conceptual construct, which we call ‘multiple-scale land sparing’, targeting biodiversity and ecosystem services in transformed landscapes. We discuss how multiple-scale land sparing may overcome the apparent dichotomy between land sharing and land sparing and help to find acceptable compromises that conserve biodiversity and landscape multifunctionality.

Biodiversity loss, emerging infectious diseases and impact on human and crops

International Nuclear Information System (INIS)

Shinwari, Z.K.; Gilani, S.A.; Khan, A.L.

2012-01-01

We are losing biodiversity through several factors ranging from global warming, climatic change, unsustainable use of natural resources, human settlements, demand for food, medicine etc. Consequently, the biodiversity losses are causing emergence of infectious diseases (EIDs) which are making them more virulent than the past. Both biodiversity loss and emergence of diseases significantly impact the human derived benefits in-terms of economy and food. Ecological stability, productivity and food-web interactions are indirectly correlated with biodiversity and any change in these will cause losses in biodiversity that would certainly influence the human derived benefits and crops. The current article reviews the biodiversity losses and emerging infectious diseases at various levels reported by recent literature which will help in current status of EIDs and future recommendations. (author)

Look both ways: mainstreaming biodiversity and poverty reduction

Energy Technology Data Exchange (ETDEWEB)

Bass, Steve; Roe, Dilys; Smith, Jessica

2010-10-15

The world's failure to meet its 2010 target to significantly reduce the rate of biodiversity loss demonstrates that conservation efforts have so far been insufficient. They are too often undermined by seemingly more pressing economic and poverty goals — despite the frequent correlation of high biodiversity with high incidence of poverty. But it shouldn't be a competition. Biodiversity and poverty reduction are intrinsically linked and demand an integrated approach. The Convention on Biological Diversity has long emphasised the need for integrating, or 'mainstreaming', biodiversity into national and local development and poverty reduction strategies, most recently in its new Strategic Plan. Lessons learnt from wider experience of environmental mainstreaming can help parties to the Convention achieve this target in practice — they point to a six-step plan for the task.

Biodiversity conservation and armed conflict: a warfare ecology perspective.

Science.gov (United States)

Hanson, Thor

2018-04-23

The activities involved in preparing for, executing, and recovering from armed conflict are globally pervasive and consequential, with significant impacts on natural systems. Effects on biodiversity are predominantly negative, produced by direct and indirect battlefield impacts, as well as the general breakdown of social, economic, and governance systems during wartime. Certain conservation opportunities do occur, however, particularly on lands set aside for training exercises, buffer zones, and peace parks. Here, the relationship between armed conflict and biodiversity is reviewed using the temporal framework of warfare ecology, which defines warfare as an ongoing process of three overlapping stages: preparations, war (armed conflict), and postwar activities. Several themes emerge from recent studies, including a heightened awareness of biodiversity conservation on military lands, the potential for scientific and conservation engagement to mitigate negative biodiversity impacts in war zones, and the importance of the postwar period for incorporating biodiversity priorities into reconstruction and recovery efforts. Research limitations and knowledge gaps are also discussed. © 2018 New York Academy of Sciences.

Data intensive computing for biodiversity

CERN Document Server

Dhillon, Sarinder K

2013-01-01

This book is focused on the development of a data integration framework for retrieval of biodiversity information from heterogeneous and distributed data sources. The data integration system proposed in this book links remote databases in a networked environment, supports heterogeneous databases and data formats, links databases hosted on multiple platforms, and provides data security for database owners by allowing them to keep and maintain their own data and to choose information to be shared and linked. The book is a useful guide for researchers, practitioners, and graduate-level students interested in learning state-of-the-art development for data integration in biodiversity.

Global imprint of historical connectivity on freshwater fish biodiversity

OpenAIRE

Dias, M. S.; Oberdorff, Thierry; Hugueny, Bernard; Leprieur, F.; Jézéquel, Céline; Cornu, Jean-François; Brosse, S.; Grenouillet, G.; Tedesco, Pablo

2014-01-01

The relative importance of contemporary and historical processes is central for understanding biodiversity patterns. While several studies show that past conditions can partly explain the current biodiversity patterns, the role of history remains elusive. We reconstructed palaeo-drainage basins under lower sea level conditions (Last Glacial Maximum) to test whether the historical connectivity between basins left an imprint on the global patterns of freshwater fish biodiversity. After controll...

The biodiversity cost of carbon sequestration in tropical savanna

OpenAIRE

Abreu, Rodolfo C. R.; Hoffmann, William A.; Vasconcelos, Heraldo L.; Pilon, Natashi A.; Rossatto, Davi R.; Durigan, Giselda

2017-01-01

Tropical savannas have been increasingly viewed as an opportunity for carbon sequestration through fire suppression and afforestation, but insufficient attention has been given to the consequences for biodiversity. To evaluate the biodiversity costs of increasing carbon sequestration, we quantified changes in ecosystem carbon stocks and the associated changes in communities of plants and ants resulting from fire suppression in savannas of the Brazilian Cerrado, a global biodiversity hotspot. ...

Designer policy for carbon and biodiversity co-benefits under global change

Science.gov (United States)

Bryan, Brett A.; Runting, Rebecca K.; Capon, Tim; Perring, Michael P.; Cunningham, Shaun C.; Kragt, Marit E.; Nolan, Martin; Law, Elizabeth A.; Renwick, Anna R.; Eber, Sue; Christian, Rochelle; Wilson, Kerrie A.

2016-03-01

Carbon payments can help mitigate both climate change and biodiversity decline through the reforestation of agricultural land. However, to achieve biodiversity co-benefits, carbon payments often require support from other policy mechanisms such as regulation, targeting, and complementary incentives. We evaluated 14 policy mechanisms for supplying carbon and biodiversity co-benefits through reforestation of carbon plantings (CP) and environmental plantings (EP) in Australia’s 85.3 Mha agricultural land under global change. The reference policy--uniform payments (bidders are paid the same price) with land-use competition (both CP and EP eligible for payments), targeting carbon--achieved significant carbon sequestration but negligible biodiversity co-benefits. Land-use regulation (only EP eligible) and two additional incentives complementing the reference policy (biodiversity premium, carbon levy) increased biodiversity co-benefits, but mostly inefficiently. Discriminatory payments (bidders are paid their bid price) with land-use competition were efficient, and with multifunctional targeting of both carbon and biodiversity co-benefits increased the biodiversity co-benefits almost 100-fold. Our findings were robust to uncertainty in global outlook, and to key agricultural productivity and land-use adoption assumptions. The results suggest clear policy directions, but careful mechanism design will be key to realising these efficiencies in practice. Choices remain for society about the amount of carbon and biodiversity co-benefits desired, and the price it is prepared to pay for them.

Conserving biodiversity on native rangelands: Symposium proceedings

Science.gov (United States)

Daniel W. Uresk; Greg L. Schenbeck; James T. O' Rourke

1997-01-01

These proceedings are the result of a symposium, "Conserving biodiversity on native rangelands" held on August 17, 1995 in Fort Robinson State Park, NE. The purpose of this symposium was to provide a forum to discuss how elements of rangeland biodiversity are being conserved today. We asked, "How resilient and sustainable are rangeland systems to the...

Interactive Effects of Nitrogen and Climate Change on Biodiversity

Science.gov (United States)

Porter, E. M.; Bowman, W. D.; Clark, C. M.; Compton, J. E.; Pardo, L. H.; Soong, J.

2011-12-01

Biodiversity has been described as the diversity of life on earth within species, between species and in ecosystems. Biodiversity contributes to regulating ecosystem services like climate, flood, disease, and water quality regulation. Biodiversity also supports and sustains ecosystem services that provide material goods like food, fiber, fuel, timber and water, and to non-material benefits like educational, recreational, spiritual, and aesthetic ecosystem services. The Millennium Ecosystem Assessment estimated that the rate of biodiversity loss due to human activity in the last 50 years has been more rapid than at any other time in human history, and that many of the drivers of biodiversity loss are increasing. The strongest drivers of biodiversity loss include habitat loss, overexploitation, invasive species, climate change, and pollution, including pollution from reactive nitrogen. Of these stressors, climate change and reactive nitrogen from anthropogenic activities are causing some of the most rapid changes. Climate change is causing warming trends that result in consistent patterns of poleward and elevational range shifts of flora and fauna, causing changes in biodiversity. Warming has also resulted in changes in phenology, particularly the earlier onset of spring events, migration, and lengthening of the growing season, disrupting predator-prey and plant-pollinator interactions. In addition to warming, elevated carbon dioxide by itself can affect biodiversity by influencing plant growth, soil water, tissue stoichiometry, and trophic interactions. Nitrogen enrichment also impacts ecosystems and biodiversity in a variety of ways. Nitrogen enhances plant growth, but has been shown to favor invasive, fast-growing species over native species adapted to low nitrogen conditions. Although there have been a limited number of empirical studies on climate change and nitrogen interactions, inferences can be drawn from observed responses to each stressor by itself. For

BIODIVERSITY CONSERVATION INCENTIVE PROGRAMS FOR PRIVATELY OWNED FORESTS

Science.gov (United States)

In many countries, a large proportion of forest biodiversity exists on private land. Legal restrictions are often inadequate to prevent loss of habitat and encourage forest owners to manage areas for biodiversity, especially when these management actions require time, money, and ...

An analytical framework for linking biodiversity to poverty

NARCIS (Netherlands)

Hengsdijk, H.; Meijerink, G.W.; Tonneijck, A.E.G.; Bindraban, P.S.

2005-01-01

This report aims to develop a framework linking poverty reduction and biodiversity conservation in order to identify research questions and to contribute to improved policy formulation. A general overview of the subject, definitions and concepts of poverty and biodiversity are described.

Socioeconomic influences on biodiversity, ecosystem services and human well-being: a quantitative application of the DPSIR model in Jiangsu, China.

Science.gov (United States)

Hou, Ying; Zhou, Shudong; Burkhard, Benjamin; Müller, Felix

2014-08-15

One focus of ecosystem service research is the connection between biodiversity, ecosystem services and human well-being as well as the socioeconomic influences on them. Despite existing investigations, exact impacts from the human system on the dynamics of biodiversity, ecosystem services and human well-being are still uncertain because of the insufficiency of the respective quantitative analyses. Our research aims are discerning the socioeconomic influences on biodiversity, ecosystem services and human well-being and demonstrating mutual impacts between these items. We propose a DPSIR framework coupling ecological integrity, ecosystem services as well as human well-being and suggest DPSIR indicators for the case study area Jiangsu, China. Based on available statistical and surveying data, we revealed the factors significantly impacting biodiversity, ecosystem services and human well-being in the research area through factor analysis and correlation analysis, using the 13 prefecture-level cities of Jiangsu as samples. The results show that urbanization and industrialization in the urban areas have predominant positive influences on regional biodiversity, agricultural productivity and tourism services as well as rural residents' living standards. Additionally, the knowledge, technology and finance inputs for agriculture also have generally positive impacts on these system components. Concerning regional carbon storage, non-cropland vegetation cover obviously plays a significant positive role. Contrarily, the expansion of farming land and the increase of total food production are two important negative influential factors of biodiversity, ecosystem's food provisioning service capacity, regional tourism income and the well-being of the rural population. Our study provides a promising approach based on the DPSIR model to quantitatively capture the socioeconomic influential factors of biodiversity, ecosystem services and human well-being for human-environmental systems

Biodiversity and global health—hubris, humility and the unknown

Science.gov (United States)

Stephens, Carolyn

2012-03-01

In November 2011, botanists on a remote island off Papua New Guinea discovered a new species of orchid—uniquely and mysteriously night-flowering [1]. New to science, and with so much more to understand, this flower is threatened by deforestation [2]. Also in November 2011, a survey of 583 conservation scientists reported a unanimous (99.5%) view that 'it is likely a serious loss of biological diversity is underway at a global extent' and that, for scientists, 'protection of biological diversity for its cultural and spiritual values and because of its usefulness to humans were low priorities, which suggests that many scientists do not fully support the utilitarian concept of ecosystem services' [3]. In terms of management, some scientists now advocate controversial conservation strategies such as triage (prioritization of species that provide unique or necessary functions to ecosystems) [4, 5]. Meanwhile, there are many scientists who contend that there is an urgent need to improve our understanding of the importance of biodiversity for human health and well-being, arguing that only an anthropocentric view of biodiversity within a paradigm 'ecosystem service' will enable decision-makers to prioritize the theme [6-9]. A 2011 UN report argues that this need for understanding is especially urgent in fragile and vulnerable ecosystems where communities depend directly on the resources of their environment [10]. Here we have a paradox: international conservation scientists think that we cannot protect biodiversity on the basis of its cultural and spiritual value, nor its usefulness to humans. Other scientists argue that using a utilitarian ecosystem services framework is the only way to get humans to protect biodiversity. Meanwhile, communities directly dependent on biodiverse ecosystems are often those who best understand and protect biodiversity, for exactly these reasons of use and spiritual connection, but they do not hold only a utilitarian view of their

MOUNTAIN NATURAL BIODIVERSITY CONSERVATION IN RUSSIA

Directory of Open Access Journals (Sweden)

Arkady Tishkov

2012-01-01

Full Text Available High biodiversity and degree of endemism of mountain biota strengthen the mountain regions’ status for the territorial nature conservation. Analysis of the protected areas’ representativeness in various mountain regions of Russia shows some discrepancy between their quantity, square and regional biodiversity originality. The biggest divergences are marked for the Northern Caucasus. The main problems: small area of the protected territories and also cluster character of their spatial distribution, mostly in the high mountains are not supposed to conform with the highest values of the regional flora’s and fauna’s uniqueness, to compensate representativeness of the protected biota and, in anyway, to correspond with the purpose of nature protection frame—the protected territories ecologic network’s forming. The situation in the Urals, Siberia and the Far East seems to be better. The large areas of the protected territories are in general agreement with the high originality of the nature ecosystems. Nevertheless each concrete case needs analysis of the regional biota’s and ecosystems’ biodiversity distribution within the protected areas, including character and (or unique elements of the regional biodiversity to be held. The development of the effectual territorial conservation of mountain regions needs differential approach. The creation of the large representative parcels of nature landscapes in the key-areas has the considerable meaning in the low-developed regions, difficult to access. And well-developed regions have the necessity of nature protected territories’ network development and the planning of the ecological frame’s forming. The territorial biodiversity conservation, including the system of federal, regional and local levels with protective conservation of the rare species has to be combined with ecosystem’s restoration, especially in the zones disturbed by erosion, recreation and military actions. Also it is

[Advances in the research on hyperspectral remote sensing in biodiversity and conservation].

Science.gov (United States)

He, Cheng; Feng, Zhong-Ke; Yuan, Jin-Jun; Wang, Jia; Gong, Yin-Xi; Dong, Zhi-Hai

2012-06-01

With the species reduction and the habitat destruction becoming serious increasingly, the biodiversity conservation has become one of the hottest topics. Remote sensing, the science of non-contact collection information, has the function of corresponding estimates of biodiversity, building model between species diversity relationship and mapping the index of biodiversity, which has been used widely in the field of biodiversity conservation. The present paper discussed the application of hyperspectral technology to the biodiversity conservation from two aspects, remote sensors and remote sensing techniques, and after, enumerated successful applications for emphasis. All these had a certain reference value in the development of biodiversity conservation.

Environmental Survey Report for ORNL: Small Mammal Abundance and Distribution Survey Oak Ridge National Environmental Research Park 2009 - 2010

Energy Technology Data Exchange (ETDEWEB)

Giffen, Neil R [ORNL; Reasor, R. Scott [Oak Ridge Institute for Science and Education (ORISE); Campbell, Claire L. [Oak Ridge Institute for Science and Education (ORISE)

2009-12-01

This report summarizes a 1-year small mammal biodiversity survey conducted on the Oak Ridge National Environmental Research Park (OR Research Park). The task was implemented through the Oak Ridge National Laboratory (ORNL) Natural Resources Management Program and included researchers from the ORNL Environmental Sciences Division, interns in the Oak Ridge Institute for Science and Education Higher Education Research Experiences Program, and ORNL Environmental Protection Services staff. Eight sites were surveyed reservation wide. The survey was conducted in an effort to determine species abundance and diversity of small mammal populations throughout the reservation and to continue the historical inventory of small mammal presence for biodiversity records. This data collection effort was in support of the approved Wildlife Management Plan for the Oak Ridge Reservation, a major goal of which is to maintain and enhance wildlife biodiversity on the Reservation. Three of the sites (Poplar Creek, McNew Hollow, and Deer Check Station Field) were previously surveyed during a major natural resources inventory conducted in 1996. Five new sites were included in this study: Bearden Creek, Rainy Knob (Natural Area 21), Gum Hollow, White Oak Creek and Melton Branch. The 2009-2010 small mammal surveys were conducted from June 2009 to July 2010 on the Oak Ridge National Environmental Research Park (OR Research Park). The survey had two main goals: (1) to determine species abundance and diversity and (2) to update historical records on the OR Research Park. The park is located on the Department of Energy-owned Oak Ridge Reservation, which encompasses 13,580 ha. The primary focus of the study was riparian zones. In addition to small mammal sampling, vegetation and coarse woody debris samples were taken at certain sites to determine any correlations between habitat and species presence. During the survey all specimens were captured and released using live trapping techniques including

Biodiversity and global change

National Research Council Canada - National Science Library

Solbrig, Otto Thomas; Emden, H. M. van; Oordt, P. G. W. J. van; Solbrig, Otto T

1992-01-01

The IUBS symposium "Biodiversity and Global Change" held during the 24th General Assembly, 1-6 September, 1991, in Amsterdam, the Netherlands, represented the first attempt to address the issue of bio...

Molecular biodiversity of Red Sea demosponges.

Science.gov (United States)

Erpenbeck, Dirk; Voigt, Oliver; Al-Aidaroos, Ali M; Berumen, Michael L; Büttner, Gabriele; Catania, Daniela; Guirguis, Adel Naguib; Paulay, Gustav; Schätzle, Simone; Wörheide, Gert

2016-04-30

Sponges are important constituents of coral reef ecosystems, including those around the Arabian Peninsula. Despite their importance, our knowledge on demosponge diversity in this area is insufficient to recognize, for example, faunal changes caused by anthropogenic disturbances. We here report the first assessment of demosponge molecular biodiversity from Arabia, with focus on the Saudi Arabian Red Sea, based on mitochondrial and nuclear ribosomal molecular markers gathered in the framework of the Sponge Barcoding Project. We use a rapid molecular screening approach on Arabian demosponge collections and analyze results in comparison against published material in terms of biodiversity. We use a variable region of 28S rDNA, applied for the first time in the assessment of demosponge molecular diversity. Our data constitutes a solid foundation for a future more comprehensive understanding of sponge biodiversity of the Red Sea and adjacent waters. Copyright © 2015 Elsevier Ltd. All rights reserved.

Enriched biodiversity data as a resource and service.

Science.gov (United States)

Vos, Rutger Aldo; Biserkov, Jordan Valkov; Balech, Bachir; Beard, Niall; Blissett, Matthew; Brenninkmeijer, Christian; van Dooren, Tom; Eades, David; Gosline, George; Groom, Quentin John; Hamann, Thomas D; Hettling, Hannes; Hoehndorf, Robert; Holleman, Ayco; Hovenkamp, Peter; Kelbert, Patricia; King, David; Kirkup, Don; Lammers, Youri; DeMeulemeester, Thibaut; Mietchen, Daniel; Miller, Jeremy A; Mounce, Ross; Nicolson, Nicola; Page, Rod; Pawlik, Aleksandra; Pereira, Serrano; Penev, Lyubomir; Richards, Kevin; Sautter, Guido; Shorthouse, David Peter; Tähtinen, Marko; Weiland, Claus; Williams, Alan R; Sierra, Soraya

2014-01-01

Recent years have seen a surge in projects that produce large volumes of structured, machine-readable biodiversity data. To make these data amenable to processing by generic, open source "data enrichment" workflows, they are increasingly being represented in a variety of standards-compliant interchange formats. Here, we report on an initiative in which software developers and taxonomists came together to address the challenges and highlight the opportunities in the enrichment of such biodiversity data by engaging in intensive, collaborative software development: The Biodiversity Data Enrichment Hackathon. The hackathon brought together 37 participants (including developers and taxonomists, i.e. scientific professionals that gather, identify, name and classify species) from 10 countries: Belgium, Bulgaria, Canada, Finland, Germany, Italy, the Netherlands, New Zealand, the UK, and the US. The participants brought expertise in processing structured data, text mining, development of ontologies, digital identification keys, geographic information systems, niche modeling, natural language processing, provenance annotation, semantic integration, taxonomic name resolution, web service interfaces, workflow tools and visualisation. Most use cases and exemplar data were provided by taxonomists. One goal of the meeting was to facilitate re-use and enhancement of biodiversity knowledge by a broad range of stakeholders, such as taxonomists, systematists, ecologists, niche modelers, informaticians and ontologists. The suggested use cases resulted in nine breakout groups addressing three main themes: i) mobilising heritage biodiversity knowledge; ii) formalising and linking concepts; and iii) addressing interoperability between service platforms. Another goal was to further foster a community of experts in biodiversity informatics and to build human links between research projects and institutions, in response to recent calls to further such integration in this research domain

Enriched biodiversity data as a resource and service

Directory of Open Access Journals (Sweden)

Rutger Vos

2014-06-01

Full Text Available Background: Recent years have seen a surge in projects that produce large volumes of structured, machine-readable biodiversity data. To make these data amenable to processing by generic, open source “data enrichment” workflows, they are increasingly being represented in a variety of standards-compliant interchange formats. Here, we report on an initiative in which software developers and taxonomists came together to address the challenges and highlight the opportunities in the enrichment of such biodiversity data by engaging in intensive, collaborative software development: The Biodiversity Data Enrichment Hackathon. Results: The hackathon brought together 37 participants (including developers and taxonomists, i.e. scientific professionals that gather, identify, name and classify species from 10 countries: Belgium, Bulgaria, Canada, Finland, Germany, Italy, the Netherlands, New Zealand, the UK, and the US. The participants brought expertise in processing structured data, text mining, development of ontologies, digital identification keys, geographic information systems, niche modeling, natural language processing, provenance annotation, semantic integration, taxonomic name resolution, web service interfaces, workflow tools and visualisation. Most use cases and exemplar data were provided by taxonomists. One goal of the meeting was to facilitate re-use and enhancement of biodiversity knowledge by a broad range of stakeholders, such as taxonomists, systematists, ecologists, niche modelers, informaticians and ontologists. The suggested use cases resulted in nine breakout groups addressing three main themes: i mobilising heritage biodiversity knowledge; ii formalising and linking concepts; and iii addressing interoperability between service platforms. Another goal was to further foster a community of experts in biodiversity informatics and to build human links between research projects and institutions, in response to recent calls to further

Potential biodiversity benefits from international programs to reduce carbon emissions from deforestation.

Science.gov (United States)

Siikamäki, Juha; Newbold, Stephen C

2012-01-01

Deforestation is the second largest anthropogenic source of carbon dioxide emissions and options for its reduction are integral to climate policy. In addition to providing potentially low cost and near-term options for reducing global carbon emissions, reducing deforestation also could support biodiversity conservation. However, current understanding of the potential benefits to biodiversity from forest carbon offset programs is limited. We compile spatial data on global forest carbon, biodiversity, deforestation rates, and the opportunity cost of land to examine biodiversity conservation benefits from an international program to reduce carbon emissions from deforestation. Our results indicate limited geographic overlap between the least-cost areas for retaining forest carbon and protecting biodiversity. Therefore, carbon-focused policies will likely generate substantially lower benefits to biodiversity than a more biodiversity-focused policy could achieve. These results highlight the need to systematically consider co-benefits, such as biodiversity in the design and implementation of forest conservation programs to support international climate policy.

Biodiversity of microcrustaceans (Cladocera, Copepoda in a lowland river ecosystem

Directory of Open Access Journals (Sweden)

Maciej Karpowicz

2016-06-01

Full Text Available This study presents comprehensive research on microcrustacean diversity in different types of aquatic environments in the Upper Narew Valley over five years. A total of 559 samples were analyzed, and 74 species of crustacean zooplankton were identified. Metacyclops planus (Gurney, 1909 is a new species for the fauna of Poland and was found in oxbow lakes and tributary streams. The results of the study suggest that oxbow lakes, with more than 80% of all recorded species, may significantly contribute to the regional biodiversity of floodplain rivers. The highest crustacean community diversity was observed in the semi-lotic oxbow lakes, which emphasizes the role of intermediate disturbance in enhancing biodiversity of water bodies in river valleys. Generally, more “heterogeneous” habitats, such as small oxbow lakes and tributary streams, had higher crustacean species richness. However, a sampling station that was quite “homogeneous”, the Narew River upstream the Siemianówka Reservoir, had high crustacean species richness. The species accumulation curves revealed that approximately 50 - 100 zooplankton samples taken from different environments of river valley are required to establish crustacean species richness. These data could be important for river catchment management and could act as pilot survey data for monitoring plans.

Microbial Flora of Partially Processed Periwinkles (Tympantotonus ...

African Journals Online (AJOL)

A survey of microbial flora of partially processed periwinkles (Tympanotonus fuscatus) sold in six markets in Port Harcourt was undertaken for twelve weeks. Results show that all samples of periwinkles were contaminated with Staphylococcus aureus, Bacillus sp., Escherichia coil, Staphepidermidis sp., Micrococcus sp., ...

Soil biodiversity in amazonian and other Brazilian ecosystems

NARCIS (Netherlands)

Moreira, F.M.S.; Siqueira, J.O.; Brussaard, L.

2006-01-01

This book reviews soil biodiversity and related ecological processes in one of the key biodiversity hotspots of the world, the Amazon, and nearby regions of Brazil. It covers both the tropical savannah and rainforests. Chapters describe the biology, ecology, taxonomy, geographic distribution and

Mosquitoes of eastern Amazonian Ecuador: biodiversity, bionomics and barcodes

Directory of Open Access Journals (Sweden)

Yvonne-Marie Linton

2013-01-01

Full Text Available Two snapshot surveys to establish the diversity and ecological preferences of mosquitoes (Diptera: Culicidae in the terra firme primary rain forest surrounding the Tiputini Biodiversity Station in the UNESCO Yasuní Biosphere Reserve of eastern Amazonian Ecuador were carried out in November 1998 and May 1999. The mosquito fauna of this region is poorly known; the focus of this study was to obtain high quality link-reared specimens that could be used to unequivocally confirm species level diversity through integrated systematic study of all life stages and DNA sequences. A total of 2,284 specimens were preserved; 1,671 specimens were link-reared with associated immature exuviae, all but 108 of which are slide mounted. This study identified 68 unique taxa belonging to 17 genera and 27 subgenera. Of these, 12 are new to science and 37 comprise new country records. DNA barcodes [658-bp of the mtDNA cytochrome c oxidase ( COI I gene] are presented for 58 individuals representing 20 species and nine genera. DNA barcoding proved useful in uncovering and confirming new species and we advocate an integrated systematics approach to biodiversity studies in future. Associated bionomics of all species collected are discussed. An updated systematic checklist of the mosquitoes of Ecuador (n = 179 is presented for the first time in 60 years.

Phylogenies support out-of-equilibrium models of biodiversity.

Science.gov (United States)

Manceau, Marc; Lambert, Amaury; Morlon, Hélène

2015-04-01

There is a long tradition in ecology of studying models of biodiversity at equilibrium. These models, including the influential Neutral Theory of Biodiversity, have been successful at predicting major macroecological patterns, such as species abundance distributions. But they have failed to predict macroevolutionary patterns, such as those captured in phylogenetic trees. Here, we develop a model of biodiversity in which all individuals have identical demographic rates, metacommunity size is allowed to vary stochastically according to population dynamics, and speciation arises naturally from the accumulation of point mutations. We show that this model generates phylogenies matching those observed in nature if the metacommunity is out of equilibrium. We develop a likelihood inference framework that allows fitting our model to empirical phylogenies, and apply this framework to various mammalian families. Our results corroborate the hypothesis that biodiversity dynamics are out of equilibrium. © 2015 John Wiley & Sons Ltd/CNRS.

Ecological strategies shapes the insurance potential of biodiversity

Directory of Open Access Journals (Sweden)

Miguel eMatias

2013-01-01

Full Text Available Biodiversity is thought to provide insurance for ecosystem functioning under heterogeneous environments, however, such insurance potential is under serious threat following unprecedented loss of biodiversity. One of the key mechanism underlying ecological insurance is that niche differentiation allows asynchronous responses to fluctuating environments; although, the role of different ecological strategies (e.g. specialists vs generalists has yet to be formally evaluated. We combine here a simple model and experimental study to illustrate how different specialization-performance strategies shape the biodiversity-insurance relationship. We assembled microcosm of generalists and specialist bacteria over a gradient of salinity and found that, bacterial communities made up of generalists were more productive and more stable over time under environmental fluctuations. We argue that beyond species richness itself, it is essential to incorporate the distribution of ecological strategies across relevant environmental gradients as predictors of the insurance potential of biodiversity in natural ecosystems.

Re-introducing environmental change drivers in biodiversity-ecosystem functioning research

Science.gov (United States)

De Laender, Frederik; Rohr, Jason R.; Ashauer, Roman; Baird, Donald J.; Berger, Uta; Eisenhauer, Nico; Grimm, Volker; Hommen, Udo; Maltby, Lorraine; Meliàn, Carlos J.; Pomati, Francesco; Roessink, Ivo; Radchuk, Viktoriia; Van den Brink, Paul J.

2016-01-01

For the past 20 years, research on biodiversity and ecosystem functioning (B-EF) has only implicitly considered the underlying role of environmental change. We illustrate that explicitly re-introducing environmental change drivers in B-EF research is needed to predict the functioning of ecosystems facing changes in biodiversity. Next, we show how this reintroduction improves experimental control over community composition and structure, which helps to obtain mechanistic insight about how multiple aspects of biodiversity relate to function, and how biodiversity and function relate in food-webs. We also highlight challenges for the proposed re-introduction, and suggest analyses and experiments to better understand how random biodiversity changes, as studied by classic approaches in B-EF research, contribute to the shifts in function that follow environmental change. PMID:27742415

Curbing UK impacts on global biodiversity: an agenda for action

Energy Technology Data Exchange (ETDEWEB)

Smith, Steve [Scott Wilson Ltd (United Kingdom); Craeynest, Lies [WWF (United Kingdom); Bass, Steve

2008-05-15

Stemming the tide of biodiversity loss is a global issue with national implications. The UK has set up initiatives to reduce its impacts on biodiversity worldwide — but as a government review found in 2006, these have yet to add up to a comprehensive strategy. How can the gaps be filled? New research suggests that action on a number of fronts is key. Many UK policies and practices clearly affect biodiversity even though they do not directly address it. For instance, UK imports such as coffee, cocoa and sugar are linked to biodiversity loss. By integrating relevant mainstream concerns such as trade and exploitation of natural resources into an overall strategy, the UK government could better demonstrate its commitment to reducing biodiversity loss significantly by the target date of 2010.

Reductions in global biodiversity loss predicted from conservation spending

Science.gov (United States)

Waldron, Anthony; Miller, Daniel C.; Redding, Dave; Mooers, Arne; Kuhn, Tyler S.; Nibbelink, Nate; Roberts, J. Timmons; Tobias, Joseph A.; Gittleman, John L.

2017-11-01

Halting global biodiversity loss is central to the Convention on Biological Diversity and United Nations Sustainable Development Goals, but success to date has been very limited. A critical determinant of success in achieving these goals is the financing that is committed to maintaining biodiversity; however, financing decisions are hindered by considerable uncertainty over the likely impact of any conservation investment. For greater effectiveness, we need an evidence-based model that shows how conservation spending quantitatively reduces the rate of biodiversity loss. Here we demonstrate such a model, and empirically quantify how conservation investment between 1996 and 2008 reduced biodiversity loss in 109 countries (signatories to the Convention on Biological Diversity and Sustainable Development Goals), by a median average of 29% per country. We also show that biodiversity changes in signatory countries can be predicted with high accuracy, using a dual model that balances the effects of conservation investment against those of economic, agricultural and population growth (human development pressures). Decision-makers can use this model to forecast the improvement that any proposed biodiversity budget would achieve under various scenarios of human development pressure, and then compare these forecasts to any chosen policy target. We find that the impact of spending decreases as human development pressures grow, which implies that funding may need to increase over time. The model offers a flexible tool for balancing the Sustainable Development Goals of human development and maintaining biodiversity, by predicting the dynamic changes in conservation finance that will be needed as human development proceeds.

Reductions in global biodiversity loss predicted from conservation spending.

Science.gov (United States)

Waldron, Anthony; Miller, Daniel C; Redding, Dave; Mooers, Arne; Kuhn, Tyler S; Nibbelink, Nate; Roberts, J Timmons; Tobias, Joseph A; Gittleman, John L

2017-11-16

Halting global biodiversity loss is central to the Convention on Biological Diversity and United Nations Sustainable Development Goals, but success to date has been very limited. A critical determinant of success in achieving these goals is the financing that is committed to maintaining biodiversity; however, financing decisions are hindered by considerable uncertainty over the likely impact of any conservation investment. For greater effectiveness, we need an evidence-based model that shows how conservation spending quantitatively reduces the rate of biodiversity loss. Here we demonstrate such a model, and empirically quantify how conservation investment reduced biodiversity loss in 109 countries (signatories to the Convention on Biological Diversity and Sustainable Development Goals), by a median average of 29% per country between 1996 and 2008. We also show that biodiversity changes in signatory countries can be predicted with high accuracy, using a dual model that balances the effects of conservation investment against those of economic, agricultural and population growth (human development pressures). Decision-makers can use this model to forecast the improvement that any proposed biodiversity budget would achieve under various scenarios of human development pressure, and then compare these forecasts to any chosen policy target. We find that the impact of spending decreases as human development pressures grow, which implies that funding may need to increase over time. The model offers a flexible tool for balancing the Sustainable Development Goals of human development and maintaining biodiversity, by predicting the dynamic changes in conservation finance that will be needed as human development proceeds.

On-farm investigation of local chicken biodiversity and performance potentials in rural areas of Jordan

OpenAIRE

Abdelqader, A.; Wollny, C. B. A.; Gauly, M.

2008-01-01

On-farm surveys were conducted to investigate the biodiversity of local chickens and their performance potential. The study was carried out in rural areas of northern Jordan. A sample of 846 adult local chickens was phenotypically characterized based on morphology, feather colors, comb shape and performance. Body measurements for cluster analyses were recorded on 460 adult females. The most predominant chicken type was the Jordan Baladi (67.3%) followed by the Pakis...

Novel urban ecosystems, biodiversity, and conservation

International Nuclear Information System (INIS)

Kowarik, Ingo

2011-01-01

With increasing urbanization the importance of cities for biodiversity conservation grows. This paper reviews the ways in which biodiversity is affected by urbanization and discusses the consequences of different conservation approaches. Cities can be richer in plant species, including in native species, than rural areas. Alien species can lead to both homogenization and differentiation among urban regions. Urban habitats can harbor self-sustaining populations of rare and endangered native species, but cannot replace the complete functionality of (semi-)natural remnants. While many conservation approaches tend to focus on such relict habitats and native species in urban settings, this paper argues for a paradigm shift towards considering the whole range of urban ecosystems. Although conservation attitudes may be challenged by the novelty of some urban ecosystems, which are often linked to high numbers of nonnative species, it is promising to consider their associated ecosystem services, social benefits, and possible contribution to biodiversity conservation. - Highlights: → This paper reviews biotic responses to urbanization and urban conservation approaches. → Cities may be rich in both native and nonnative species. → Urban habitats cannot replace the functionality of natural remnants. → However, even novel urban habitats may harbour rare and endangered species. → Conservation approaches should consider the perspective of novel urban ecosystems. - This paper reviews the ways in which biodiversity is affected by urbanization and argues for expanding urban conservation approaches.

Novel urban ecosystems, biodiversity, and conservation

Energy Technology Data Exchange (ETDEWEB)

Kowarik, Ingo, E-mail: kowarik@tu-berlin.de [Department of Ecology, Technische Universitaet Berlin, Rothenburgstr. 12, D 12165 Berlin (Germany)

2011-08-15

With increasing urbanization the importance of cities for biodiversity conservation grows. This paper reviews the ways in which biodiversity is affected by urbanization and discusses the consequences of different conservation approaches. Cities can be richer in plant species, including in native species, than rural areas. Alien species can lead to both homogenization and differentiation among urban regions. Urban habitats can harbor self-sustaining populations of rare and endangered native species, but cannot replace the complete functionality of (semi-)natural remnants. While many conservation approaches tend to focus on such relict habitats and native species in urban settings, this paper argues for a paradigm shift towards considering the whole range of urban ecosystems. Although conservation attitudes may be challenged by the novelty of some urban ecosystems, which are often linked to high numbers of nonnative species, it is promising to consider their associated ecosystem services, social benefits, and possible contribution to biodiversity conservation. - Highlights: > This paper reviews biotic responses to urbanization and urban conservation approaches. > Cities may be rich in both native and nonnative species. > Urban habitats cannot replace the functionality of natural remnants. > However, even novel urban habitats may harbour rare and endangered species. > Conservation approaches should consider the perspective of novel urban ecosystems. - This paper reviews the ways in which biodiversity is affected by urbanization and argues for expanding urban conservation approaches.

Biodiversity of the Great Barrier Reef—how adequately is it protected?

Directory of Open Access Journals (Sweden)

Zoe T. Richards

2018-05-01

analysis would provide the opportunity to evaluate what new and targeted information is necessary to support dynamic management and to safeguard both species and the ecosystem as a whole. Such an analysis would help decision-makers determine if further comprehensive biodiversity surveys are needed, especially for those species recognised to be facing elevated background levels of threat. If further monitoring is undertaken, it will be important to ensure it aligns with and informs the GBRMPA Outlook five-year reporting schedule. The potential also exists to incorporate new environmental DNA technologies into routine monitoring to deliver high-resolution species data and identify indicator species that are cursors of specific disturbances. Unless more targeted action is taken to safeguard biodiversity, we may fail to pass onto future generations many of the values that comprise what is universally regarded as the world’s most iconic coral reef ecosystem.

Microbial Functional Gene Diversity Predicts Groundwater Contamination and Ecosystem Functioning

Science.gov (United States)

Zhang, Ping; Wu, Linwei; Rocha, Andrea M.; Shi, Zhou; Wu, Bo; Qin, Yujia; Wang, Jianjun; Yan, Qingyun; Curtis, Daniel; Ning, Daliang; Van Nostrand, Joy D.; Wu, Liyou; Watson, David B.; Adams, Michael W. W.; Alm, Eric J.; Adams, Paul D.; Arkin, Adam P.

2018-01-01

ABSTRACT Contamination from anthropogenic activities has significantly impacted Earth’s biosphere. However, knowledge about how environmental contamination affects the biodiversity of groundwater microbiomes and ecosystem functioning remains very limited. Here, we used a comprehensive functional gene array to analyze groundwater microbiomes from 69 wells at the Oak Ridge Field Research Center (Oak Ridge, TN), representing a wide pH range and uranium, nitrate, and other contaminants. We hypothesized that the functional diversity of groundwater microbiomes would decrease as environmental contamination (e.g., uranium or nitrate) increased or at low or high pH, while some specific populations capable of utilizing or resistant to those contaminants would increase, and thus, such key microbial functional genes and/or populations could be used to predict groundwater contamination and ecosystem functioning. Our results indicated that functional richness/diversity decreased as uranium (but not nitrate) increased in groundwater. In addition, about 5.9% of specific key functional populations targeted by a comprehensive functional gene array (GeoChip 5) increased significantly (P contamination and ecosystem functioning. This study indicates great potential for using microbial functional genes to predict environmental contamination and ecosystem functioning. PMID:29463661

Pechora River basin integrated system management PRISM; biodiversity assessment for the Pechora River basin; Cluster B: biodiversity, land use & forestry modeling

NARCIS (Netherlands)

Sluis, van der T.

2005-01-01

This report describes the biodiversity for the Pechora River basin Integrated System Management (PRISM). The Pechora River Basin, situated just west of the Ural Mountains, Russia, consists of vast boreal forests and tundra landscapes, partly pristine and undisturbed. The concept of biodiversity is

Interaction between forest biodiversity and people's use of forest resources in Roviana, Solomon Islands: implications for biocultural conservation under socioeconomic changes.

Science.gov (United States)

Furusawa, Takuro; Sirikolo, Myknee Qusa; Sasaoka, Masatoshi; Ohtsuka, Ryutaro

2014-01-27

In Solomon Islands, forests have provided people with ecological services while being affected by human use and protection. This study used a quantitative ethnobotanical analysis to explore the society-forest interaction and its transformation in Roviana, Solomon Islands. We compared local plant and land uses between a rural village and urbanized village. Special attention was paid to how local people depend on biodiversity and how traditional human modifications of forest contribute to biodiversity conservation. After defining locally recognized land-use classes, vegetation surveys were conducted in seven forest classes. For detailed observations of daily plant uses, 15 and 17 households were randomly selected in the rural and urban villages, respectively. We quantitatively documented the plant species that were used as food, medicine, building materials, and tools. The vegetation survey revealed that each local forest class represented a different vegetative community with relatively low similarity between communities. Although commercial logging operations and agriculture were both prohibited in the customary nature reserve, local people were allowed to cut down trees for their personal use and to take several types of non-timber forest products. Useful trees were found at high frequencies in the barrier island's primary forest (68.4%) and the main island's reserve (68.3%). Various useful tree species were found only in the reserve forest and seldom available in the urban village. In the rural village, customary governance and control over the use of forest resources by the local people still functioned. Human modifications of the forest created unique vegetation communities, thus increasing biodiversity overall. Each type of forest had different species that varied in their levels of importance to the local subsistence lifestyle, and the villagers' behaviors, such as respect for forest reserves and the semidomestication of some species, contributed to

Taxonomic bias in biodiversity data and societal preferences.

Science.gov (United States)

Troudet, Julien; Grandcolas, Philippe; Blin, Amandine; Vignes-Lebbe, Régine; Legendre, Frédéric

2017-08-22

Studying and protecting each and every living species on Earth is a major challenge of the 21 st century. Yet, most species remain unknown or unstudied, while others attract most of the public, scientific and government attention. Although known to be detrimental, this taxonomic bias continues to be pervasive in the scientific literature, but is still poorly studied and understood. Here, we used 626 million occurrences from the Global Biodiversity Information Facility (GBIF), the biggest biodiversity data portal, to characterize the taxonomic bias in biodiversity data. We also investigated how societal preferences and taxonomic research relate to biodiversity data gathering. For each species belonging to 24 taxonomic classes, we used the number of publications from Web of Science and the number of web pages from Bing searches to approximate research activity and societal preferences. Our results show that societal preferences, rather than research activity, strongly correlate with taxonomic bias, which lead us to assert that scientists should advertise less charismatic species and develop societal initiatives (e.g. citizen science) that specifically target neglected organisms. Ensuring that biodiversity is representatively sampled while this is still possible is an urgent prerequisite for achieving efficient conservation plans and a global understanding of our surrounding environment.

The Value of Tropical Biodiversity in Rural Melanesia

Directory of Open Access Journals (Sweden)

Simon Foale

2016-11-01

Full Text Available In this paper we discuss differences in the ways transnational conservationists and Melanesian farmers, hunters and fishers value "biodiversity". The money for conservation projects in developing countries originates from people who are embedded in a capitalist system, which allows engagement with nature as an abstract entity. Their western education has given them a scientific/ evolutionary-based worldview, which attributes intrinsic value to all species (and particular arrangements of species, e.g. rainforests and coral reefs, irrespective of economic value or ecosystem function. Because this value system is mostly not shared by the custodians of the biodiversity that conservationists want to save, alternative tactics and arguments are utilised. These inevitably take the form of so-called "win-win" economic rationales for preserving biodiversity, most of which do not work well (e.g. bioprospecting, ecotourism, non-timber forest products, environmental certification schemes, payments for ecosystem services, etc., for reasons which we detail. Agriculture- and aquaculture-based livelihoods appear to enjoy more success than the "win-win" options but do not necessarily obviate or deter further biodiversity loss. Artisanal use of species-poor but productive and resilient pelagic fisheries is increasing. These ecological and economic realities bring into sharp focus the importance of understanding differences in value systems for successful biodiversity conservation in the tropics.

Biodiversity, climate change and complexity: An opportunity for securing co-benefits?

Energy Technology Data Exchange (ETDEWEB)

Roe, Dilys

2006-10-15

Climate change and biodiversity loss are both major environmental concerns, yet the links between them often go unrecognised. Not only does the science of climate change and biodiversity share similar characteristics, but climate change both affects, and is affected by biodiversity. Diversity confers far greater resilience on natural systems, thus reducing their vulnerability – and the vulnerability of the people that depend upon them – to climate change. Yet climate adaptation and mitigation strategies that are blind to biodiversity can undermine this natural and social resilience. Ignoring the links between biodiversity and climate risks exacerbates the problems associated with climate change and represents a missed opportunity for maximising co-benefits.

Effect of ecosystems substitutions and CO{sub 2} increase of the atmosphere on the microbial ecosystems of forests; Effet de substitutions d'essence et de l'augmentation en CO{sub 2} de l'atmosphere sur les communautes microbiennes intervenant dans le fonctionnement d'un ecosysteme forestier

Energy Technology Data Exchange (ETDEWEB)

Martin, F

2007-07-01

Biological diversity is often exclusively considered at the level of plants and animals, whereas the bulk of global biodiversity is in fact at the microbial level. Although it is clear that the ecology of our planet is driven by microbial ecosystems, we are severely hampered by our limited understanding of the diversity and function of such microbial ecosystems. In the present project, teams in the disciplines of geochemistry, soil microbiology, genomics and ecosystem processes are assembled to study the relationship between environmental change, land use changes, biodiversity, and functioning of forest ecosystems. The network has a strong focus on developing and applying biochemical and genotyping methodologies to address key scientific issues in soil microbial ecology. These include assessing the impact of environmental- and land use changes on microbial diversity and function and exploring the evolutionary and mechanistic links between biological diversity and ecosystem function. In the present study, we have shown that: (1) The native mixed forest showed the highest microbial diversity (2) The mono specific plantations of tree species (e.g., oak, beech, pine, spruce) strikingly alter genetic and functional diversities of soil bacterial and fungal species. (3) Bacterial denitrification rates were dramatically modified by the planted species. Only by taking into account the impact of forest management on below-ground microbial diversity can one hope to get a full ecosystem-based understanding, and this must be addressed via modelling in order to provide relevant and useful information for conservation and policy making. (author)

Development of Extended Content Standards for Biodiversity Data

Science.gov (United States)

Hugo, Wim; Schmidt, Jochen; Saarenmaa, Hannu

2013-04-01

Interoperability in the field of Biodiversity observation has been strongly driven by the development of a number of global initiatives (GEO, GBIF, OGC, TDWG, GenBank, …) and its supporting standards (OGC-WxS, OGC-SOS, Darwin Core (DwC), NetCDF, …). To a large extent, these initiatives have focused on discoverability and standardization of syntactic and schematic interoperability. Semantic interoperability is more complex, requiring development of domain-dependent conceptual data models, and extension of these models with appropriate ontologies (typically manifested as controlled vocabularies). Biodiversity content has been standardized partly, for example through Darwin Core for occurrence data and associated taxonomy, and through Genbank for genetic data, but other contexts of biodiversity observation have lagged behind - making it difficult to achieve semantic interoperability between distributed data sources. With this in mind, WG8 of GEO BON (charged with data and systems interoperability) has started a work programme to address a number of concerns, one of which is the gap in content standards required to make Biodiversity data truly interoperable. The paper reports on the framework developed by WG8 for the classification of Biodiversity observation data into 'families' of use cases and its supporting data schema, where gaps, if any, in the availability if content standards have been identified, and how these are to be addressed by way of an abstract data model and the development of associated content standards. It is proposed that a minimum set of standards (1) will be required to address the scope of Biodiversity content, aligned with levels and dimensions of observation, and based on the 'Essential Biodiversity Variables' (2) being developed by GEO BON . The content standards are envisaged as loosely separated from the syntactic and schematic standards used for the base data exchange: typically, services would offer an existing data standard (DwC, WFS

78 FR 19353 - Biodiversity Beyond National Jurisdiction; Notice of Public Meeting

Science.gov (United States)

2013-03-29

... DEPARTMENT OF STATE [Public Notice 8262] Biodiversity Beyond National Jurisdiction; Notice of... information session regarding issues related to marine biodiversity in areas beyond national jurisdiction... international meetings and negotiations on marine biodiversity beyond national jurisdiction, such as the meeting...

Landscape moderation of biodiversity patterns and processes - eight hypotheses.

Science.gov (United States)

Tscharntke, Teja; Tylianakis, Jason M; Rand, Tatyana A; Didham, Raphael K; Fahrig, Lenore; Batáry, Péter; Bengtsson, Janne; Clough, Yann; Crist, Thomas O; Dormann, Carsten F; Ewers, Robert M; Fründ, Jochen; Holt, Robert D; Holzschuh, Andrea; Klein, Alexandra M; Kleijn, David; Kremen, Claire; Landis, Doug A; Laurance, William; Lindenmayer, David; Scherber, Christoph; Sodhi, Navjot; Steffan-Dewenter, Ingolf; Thies, Carsten; van der Putten, Wim H; Westphal, Catrin

2012-08-01

Understanding how landscape characteristics affect biodiversity patterns and ecological processes at local and landscape scales is critical for mitigating effects of global environmental change. In this review, we use knowledge gained from human-modified landscapes to suggest eight hypotheses, which we hope will encourage more systematic research on the role of landscape composition and configuration in determining the structure of ecological communities, ecosystem functioning and services. We organize the eight hypotheses under four overarching themes. Section A: 'landscape moderation of biodiversity patterns' includes (1) the landscape species pool hypothesis-the size of the landscape-wide species pool moderates local (alpha) biodiversity, and (2) the dominance of beta diversity hypothesis-landscape-moderated dissimilarity of local communities determines landscape-wide biodiversity and overrides negative local effects of habitat fragmentation on biodiversity. Section B: 'landscape moderation of population dynamics' includes (3) the cross-habitat spillover hypothesis-landscape-moderated spillover of energy, resources and organisms across habitats, including between managed and natural ecosystems, influences landscape-wide community structure and associated processes and (4) the landscape-moderated concentration and dilution hypothesis-spatial and temporal changes in landscape composition can cause transient concentration or dilution of populations with functional consequences. Section C: 'landscape moderation of functional trait selection' includes (5) the landscape-moderated functional trait selection hypothesis-landscape moderation of species trait selection shapes the functional role and trajectory of community assembly, and (6) the landscape-moderated insurance hypothesis-landscape complexity provides spatial and temporal insurance, i.e. high resilience and stability of ecological processes in changing environments. Section D: 'landscape constraints on

Assessing the impact of plantation forestry on plant biodiversity

Directory of Open Access Journals (Sweden)

Andreas Ch. Braun

2017-04-01

Full Text Available Effects of plantation forestry on biodiversity are controversially discussed in literature. While some authors stress positive effects, others tend to attribute a largely negative influence to plantations. One important factor steering the influence on biodiversity are management practices. A second important factor is the environmental matrix. Chile offers the option to analyse both factors jointly. The coastal range of central Chile has experienced rapid and widespread replacement of native Nothofagus spp. forests in favour of Pinus radiata plantations. Here, native forests remain limited to small patches surrounded by an environmental matrix of plantations. Management is rather intensive and not designed to maintain biodiversity. While in the coastal range of central Chile the transformation from native forests to non-native tree plantations has almost come to an end, spatial extension of P. contorta and P. ponderosa plantations has just recently begun in Chilean Patagonia. While the management is similar to central Chile, plantations rather exist as small patches surrounded by an environmental matrix of native plant formations (e.g. Nothofagus spp. forests and Nothofagus spp. scrublands. In the framework of this work, effects of the two diametric land usages on biodiversity are assessed and compared. Biodiversity is assessed at the α-, β- and γ-scale. At the α-scale, biodiversity impacts are inferred statistically, using one-way ANOVA and Tukey’s PostHoc test. Biodiversity of plants at both sites is significantly reduced in plantations when compared to native forests or scrublands. Plantation forestry lowers α-biodiversity and does not provide additional habitats for specialists. At the β-scale, weak edge effects due to the presence of native forests are observed. In total, plantation forestry tends to promote plant invasions and impairs the survival of endemics. At the γ-scale, plant species communities where predominantly native

European Atlas of Soil Biodiversity

DEFF Research Database (Denmark)

Krogh (contributor), Paul Henning

Soil is one of the fundamental components for supporting life on Earth. Most ecosystem processes and global functions that occur within soil are driven by living organisms that, in turn, sustain life above ground. However, despite the fact that soils are home to a quarter of all living species on...... Biodiversity is an essential reference to the many and varied aspects of soil. The overall goal of this work is to convey the fundamental necessity to safeguard soil biodiversity in order to guarantee life on this planet.......Soil is one of the fundamental components for supporting life on Earth. Most ecosystem processes and global functions that occur within soil are driven by living organisms that, in turn, sustain life above ground. However, despite the fact that soils are home to a quarter of all living species...... on Earth, life within the soil is often hidden away and suffers by being 'out of sight and out of mind'. What kind of life is there in soil? What do we mean by soil biodiversity? What is special about soil biology? How do our activities affect soil ecosystems? What are the links between soil biota...

Getting the message across biodiversity science and policy interfaces: A review

NARCIS (Netherlands)

Spierenburg, M.J.

2012-01-01

This contribution analyses the difficulties of biodiversity policy-making and the role of science. It addresses biodiversity scientists' struggles to communicate the value of biodiversity to policy-makers, and the tensions between producing policyrelevant research and being perceived as too

High quality residues from cover crops favor changes in microbial community and enhance C and N sequestration

Directory of Open Access Journals (Sweden)

Ileana Frasier

2016-04-01

Full Text Available The objective of the study was to evaluate the effect of a change in management on the soil microbial community and C sequestration. We conducted a 3-year field study in La Pampa (Argentina with rotation of sorghum (Sorghum bicolor in zero tillage alternating with rye (Secale cereale and vetch (Vicia villosa ssp. dasycarpa. Soil was sampled once a year at two depths. Soil organic matter fractions, dissolved organic matter, microbial biomass (MBC and community composition (DNA extraction, qPCR, and phospholipid FAME profiles were determined. Litter, aerial- and root biomass were collected and all material was analyzed for C and N. Results showed a rapid response of microbial biomass to a bacterial dominance independent of residue quality. Vetch had the highest diversity index, while the fertilized treatment had the lowest one. Vetch–sorghum rotation with high N mineralization rates and diverse microbial community sequestered more C and N in stable soil organic matter fractions than no-till sorghum alone or with rye, which had lower N turnover rates. These results reaffirm the importance of enhanced soil biodiversity for maintaining soil ecosystem functioning and services. The supply of high amounts of N-rich residues as provided by grass–legume cover crops could fulfill this objective.

Changing composition of microbial communities indicates seepage fluid difference of the Thuwal Seeps in the Red Sea

KAUST Repository

Yang, Bo

2015-06-10

© Springer International Publishing Switzerland 2015. Cold seeps are unique ecosystems that are generally characterized by high salinity and reducing solutions. Seepage fluid, the major water influx of this system, contains hypersaline water, sediment pore water, and other components. The Thuwal cold seeps were recently discovered on the continental margin of the Red Sea. Using 16S rRNA gene pyro-sequencing technology, microbial communities were investigated by comparing samples collected in 2011 and 2013. The results revealed differences in the microbial communities between the two sampling times. In particular, a significantly higher abundance of Marine Group I (MGI) Thaumarchaeota was coupled with lower salinity in 2013. In the brine pool, the dominance of Desulfobacterales in 2011 was supplanted byMGI Thaumarchaeota in 2013, perhaps due to a reduced supply of hydrogen sulfide from the seepage fluid. Collectively, this study revealed a difference in water components in this ecosystem between two sampling times. The results indicated that the seawater in this cold seep displayed a greater number of characteristics of normal seawater in 2013 than in 2011, which might represent the dominant driving force for changes in microbial community structures. This is the first study to provide a temporal comparison of the microbial biodiversity of a cold seep ecosystem in the Red Sea.

Changing composition of microbial communities indicates seepage fluid difference of the Thuwal Seeps in the Red Sea

KAUST Repository

Yang, Bo; Zhang, Weipeng; Tian, Renmao; Wang, Yong; Qian, Pei-Yuan

2015-01-01

© Springer International Publishing Switzerland 2015. Cold seeps are unique ecosystems that are generally characterized by high salinity and reducing solutions. Seepage fluid, the major water influx of this system, contains hypersaline water, sediment pore water, and other components. The Thuwal cold seeps were recently discovered on the continental margin of the Red Sea. Using 16S rRNA gene pyro-sequencing technology, microbial communities were investigated by comparing samples collected in 2011 and 2013. The results revealed differences in the microbial communities between the two sampling times. In particular, a significantly higher abundance of Marine Group I (MGI) Thaumarchaeota was coupled with lower salinity in 2013. In the brine pool, the dominance of Desulfobacterales in 2011 was supplanted byMGI Thaumarchaeota in 2013, perhaps due to a reduced supply of hydrogen sulfide from the seepage fluid. Collectively, this study revealed a difference in water components in this ecosystem between two sampling times. The results indicated that the seawater in this cold seep displayed a greater number of characteristics of normal seawater in 2013 than in 2011, which might represent the dominant driving force for changes in microbial community structures. This is the first study to provide a temporal comparison of the microbial biodiversity of a cold seep ecosystem in the Red Sea.

Can Community Members Identify Tropical Tree Species for REDD+ Carbon and Biodiversity Measurements?

Science.gov (United States)

Zhao, Mingxu; Brofeldt, Søren; Li, Qiaohong; Xu, Jianchu; Danielsen, Finn; Læssøe, Simon Bjarke Lægaard; Poulsen, Michael Køie; Gottlieb, Anna; Maxwell, James Franklin; Theilade, Ida

2016-01-01

Biodiversity conservation is a required co-benefit of REDD+. Biodiversity monitoring is therefore needed, yet in most areas it will be constrained by limitations in the available human professional and financial resources. REDD+ programs that use forest plots for biomass monitoring may be able to take advantage of the same data for detecting changes in the tree diversity, using the richness and abundance of canopy trees as a proxy for biodiversity. If local community members are already assessing the above-ground biomass in a representative network of forest vegetation plots, it may require minimal further effort to collect data on the diversity of trees. We compare community members and trained scientists' data on tree diversity in permanent vegetation plots in montane forest in Yunnan, China. We show that local community members here can collect tree diversity data of comparable quality to trained botanists, at one third the cost. Without access to herbaria, identification guides or the Internet, community members could provide the ethno-taxonomical names for 95% of 1071 trees in 60 vegetation plots. Moreover, we show that the community-led survey spent 89% of the expenses at village level as opposed to 23% of funds in the monitoring by botanists. In participatory REDD+ programs in areas where community members demonstrate great knowledge of forest trees, community-based collection of tree diversity data can be a cost-effective approach for obtaining tree diversity information.

Can Community Members Identify Tropical Tree Species for REDD+ Carbon and Biodiversity Measurements?

Directory of Open Access Journals (Sweden)

Mingxu Zhao

Full Text Available Biodiversity conservation is a required co-benefit of REDD+. Biodiversity monitoring is therefore needed, yet in most areas it will be constrained by limitations in the available human professional and financial resources. REDD+ programs that use forest plots for biomass monitoring may be able to take advantage of the same data for detecting changes in the tree diversity, using the richness and abundance of canopy trees as a proxy for biodiversity. If local community members are already assessing the above-ground biomass in a representative network of forest vegetation plots, it may require minimal further effort to collect data on the diversity of trees. We compare community members and trained scientists' data on tree diversity in permanent vegetation plots in montane forest in Yunnan, China. We show that local community members here can collect tree diversity data of comparable quality to trained botanists, at one third the cost. Without access to herbaria, identification guides or the Internet, community members could provide the ethno-taxonomical names for 95% of 1071 trees in 60 vegetation plots. Moreover, we show that the community-led survey spent 89% of the expenses at village level as opposed to 23% of funds in the monitoring by botanists. In participatory REDD+ programs in areas where community members demonstrate great knowledge of forest trees, community-based collection of tree diversity data can be a cost-effective approach for obtaining tree diversity information.

Sustaining America's Aquatic Biodiversity. Aquatic Insect Biodiversity and Conservation

OpenAIRE

Voshell, J. Reese

2005-01-01

Provides a description of the structure and appearance of aquatic insects, how they live and reproduce, the habitats they live in, how to collect them, why they are of importance, and threats to their survival; document also includes a brief illustrated summary of the eight major groups of aquatic insects and web links to more information. Part of a 12 part series on sustaining aquatic biodiversity in America.

The biodiversity from Bogota

International Nuclear Information System (INIS)

Calvachi Zambrano, Byron

2002-01-01

It is about the flora biodiversity and fauna that it occupied the savannah of Bogota originally, about the flora and extinct fauna and of the flora and fauna that still persist in spite of the colonization

Biodiversity as a multidimensional construct: a review, framework and case study of herbivory's impact on plant biodiversity

DEFF Research Database (Denmark)

Naeem, S.; Prager, Case; Weeks, Brian

2016-01-01

on understory plant cover at Black Rock Forest, New York. Using three biodiversity dimensions (taxonomic, functional and phylogenetic diversity) to explore our framework, we found that herbivory alters biodiversity's multidimensional influence on plant cover; an effect not observable through a unidimensional...... approach. Although our review, framework and case study illustrate the advantages of multidimensional over unidimensional approaches, they also illustrate the statistical and empirical challenges such work entails. Meeting these challenges, however, where data and resources permit, will be important if we...

Toward an integrated monitoring framework to assess the effects of tropical forest degradation and recovery on carbon stocks and biodiversity.

Science.gov (United States)

Bustamante, Mercedes M C; Roitman, Iris; Aide, T Mitchell; Alencar, Ane; Anderson, Liana O; Aragão, Luiz; Asner, Gregory P; Barlow, Jos; Berenguer, Erika; Chambers, Jeffrey; Costa, Marcos H; Fanin, Thierry; Ferreira, Laerte G; Ferreira, Joice; Keller, Michael; Magnusson, William E; Morales-Barquero, Lucia; Morton, Douglas; Ometto, Jean P H B; Palace, Michael; Peres, Carlos A; Silvério, Divino; Trumbore, Susan; Vieira, Ima C G

2016-01-01

Tropical forests harbor a significant portion of global biodiversity and are a critical component of the climate system. Reducing deforestation and forest degradation contributes to global climate-change mitigation efforts, yet emissions and removals from forest dynamics are still poorly quantified. We reviewed the main challenges to estimate changes in carbon stocks and biodiversity due to degradation and recovery of tropical forests, focusing on three main areas: (1) the combination of field surveys and remote sensing; (2) evaluation of biodiversity and carbon values under a unified strategy; and (3) research efforts needed to understand and quantify forest degradation and recovery. The improvement of models and estimates of changes of forest carbon can foster process-oriented monitoring of forest dynamics, including different variables and using spatially explicit algorithms that account for regional and local differences, such as variation in climate, soil, nutrient content, topography, biodiversity, disturbance history, recovery pathways, and socioeconomic factors. Generating the data for these models requires affordable large-scale remote-sensing tools associated with a robust network of field plots that can generate spatially explicit information on a range of variables through time. By combining ecosystem models, multiscale remote sensing, and networks of field plots, we will be able to evaluate forest degradation and recovery and their interactions with biodiversity and carbon cycling. Improving monitoring strategies will allow a better understanding of the role of forest dynamics in climate-change mitigation, adaptation, and carbon cycle feedbacks, thereby reducing uncertainties in models of the key processes in the carbon cycle, including their impacts on biodiversity, which are fundamental to support forest governance policies, such as Reducing Emissions from Deforestation and Forest Degradation. © 2015 John Wiley & Sons Ltd.

Biodiversity influences plant productivity through niche–efficiency

Science.gov (United States)

Liang, Jingjing; Zhou, Mo; Tobin, Patrick C.; McGuire, A. David; Reich, Peter B.

2015-01-01

The loss of biodiversity is threatening ecosystem productivity and services worldwide, spurring efforts to quantify its effects on the functioning of natural ecosystems. Previous research has focused on the positive role of biodiversity on resource acquisition (i.e., niche complementarity), but a lack of study on resource utilization efficiency, a link between resource and productivity, has rendered it difficult to quantify the biodiversity–ecosystem functioning relationship. Here we demonstrate that biodiversity loss reduces plant productivity, other things held constant, through theory, empirical evidence, and simulations under gradually relaxed assumptions. We developed a theoretical model named niche–efficiency to integrate niche complementarity and a heretofore-ignored mechanism of diminishing marginal productivity in quantifying the effects of biodiversity loss on plant productivity. Based on niche–efficiency, we created a relative productivity metric and a productivity impact index (PII) to assist in biological conservation and resource management. Relative productivity provides a standardized measure of the influence of biodiversity on individual productivity, and PII is a functionally based taxonomic index to assess individual species’ inherent value in maintaining current ecosystem productivity. Empirical evidence from the Alaska boreal forest suggests that every 1% reduction in overall plant diversity could render an average of 0.23% decline in individual tree productivity. Out of the 283 plant species of the region, we found that large woody plants generally have greater PII values than other species. This theoretical model would facilitate the integration of biological conservation in the international campaign against several pressing global issues involving energy use, climate change, and poverty. PMID:25901325

Biodiversity influences plant productivity through niche–efficiency

Science.gov (United States)

Liang, Jingjing; Zhou, Mo; Tobin, Patrick C.; McGuire, A. David; Reich, Peter B.

2015-01-01

The loss of biodiversity is threatening ecosystem productivity and services worldwide, spurring efforts to quantify its effects on the functioning of natural ecosystems. Previous research has focused on the positive role of biodiversity on resource acquisition (i.e., niche complementarity), but a lack of study on resource utilization efficiency, a link between resource and productivity, has rendered it difficult to quantify the biodiversity–ecosystem functioning relationship. Here we demonstrate that biodiversity loss reduces plant productivity, other things held constant, through theory, empirical evidence, and simulations under gradually relaxed assumptions. We developed a theoretical model named niche–efficiency to integrate niche complementarity and a heretofore-ignored mechanism of diminishing marginal productivity in quantifying the effects of biodiversity loss on plant productivity. Based on niche–efficiency, we created a relative productivity metric and a productivity impact index (PII) to assist in biological conservation and resource management. Relative productivity provides a standardized measure of the influence of biodiversity on individual productivity, and PII is a functionally based taxonomic index to assess individual species’ inherent value in maintaining current ecosystem productivity. Empirical evidence from the Alaska boreal forest suggests that every 1% reduction in overall plant diversity could render an average of 0.23% decline in individual tree productivity. Out of the 283 plant species of the region, we found that large woody plants generally have greater PII values than other species. This theoretical model would facilitate the integration of biological conservation in the international campaign against several pressing global issues involving energy use, climate change, and poverty.

Economic prosperity, biodiversity conservation, and the environmental Kuznets curve

International Nuclear Information System (INIS)

Mills, Julianne H.; Waite, Thomas A.

2009-01-01

Many conservationists contend that economic growth and biodiversity conservation are incompatible goals. Some economists contest this viewpoint, arguing that wealthier countries have the luxury of investing more heavily in efforts to conserve biodiversity. Under this assumption, we expect a U-shaped relationship between per capita wealth and proportion of species conserved. We test this environmental Kuznets curve (EKC) using estimates of per capita income and deforestation rates (index of biodiversity threat) for 35 tropical countries. A prior analysis [Dietz, S., Adger, W.N., 2003. Economic growth, biodiversity loss and conservation effort. Journal of Environmental Management, 68:23-35] using conventional regression techniques failed to provide any support for the parabolic relationship predicted by the EKC hypothesis. Here, we introduce the use of quantile regression and spatial filtering to reanalyze this data, addressing issues of heteroskedasticity and spatial autocorrelation. We note that preliminary analysis using these methods provides some initial evidence for an EKC. However, a series of panel analyses with country-specific dummy variables eliminated or even reversed much of this support. A closer examination of conservation practices and environmental indicators within the countries, particularly those countries that drove our initial support, suggests that wealth is not a reliable indicator of improved conservation practice. Our findings indicate that an EKC for biodiversity is overly simplistic and further exploration is required to fully understand the mechanisms by which income affects biodiversity. (author)

Understanding how biodiversity unfolds through time under neutral theory.

Science.gov (United States)

Missa, Olivier; Dytham, Calvin; Morlon, Hélène

2016-04-05

Theoretical predictions for biodiversity patterns are typically derived under the assumption that ecological systems have reached a dynamic equilibrium. Yet, there is increasing evidence that various aspects of ecological systems, including (but not limited to) species richness, are not at equilibrium. Here, we use simulations to analyse how biodiversity patterns unfold through time. In particular, we focus on the relative time required for various biodiversity patterns (macroecological or phylogenetic) to reach equilibrium. We simulate spatially explicit metacommunities according to the Neutral Theory of Biodiversity (NTB) under three modes of speciation, which differ in how evenly a parent species is split between its two daughter species. We find that species richness stabilizes first, followed by species area relationships (SAR) and finally species abundance distributions (SAD). The difference in timing of equilibrium between these different macroecological patterns is the largest when the split of individuals between sibling species at speciation is the most uneven. Phylogenetic patterns of biodiversity take even longer to stabilize (tens to hundreds of times longer than species richness) so that equilibrium predictions from neutral theory for these patterns are unlikely to be relevant. Our results suggest that it may be unwise to assume that biodiversity patterns are at equilibrium and provide a first step in studying how these patterns unfold through time. © 2016 The Author(s).

Economic prosperity, biodiversity conservation, and the environmental Kuznets curve

Energy Technology Data Exchange (ETDEWEB)

Mills, Julianne H.; Waite, Thomas A. [Department of Evolution, Ecology and Organismal Biology, Ohio State University, 300 Aronoff Laboratory, 318 W. 12th Ave., Columbus, OH, 43210 (United States)

2009-05-15

Many conservationists contend that economic growth and biodiversity conservation are incompatible goals. Some economists contest this viewpoint, arguing that wealthier countries have the luxury of investing more heavily in efforts to conserve biodiversity. Under this assumption, we expect a U-shaped relationship between per capita wealth and proportion of species conserved. We test this environmental Kuznets curve (EKC) using estimates of per capita income and deforestation rates (index of biodiversity threat) for 35 tropical countries. A prior analysis [Dietz, S., Adger, W.N., 2003. Economic growth, biodiversity loss and conservation effort. Journal of Environmental Management, 68:23-35] using conventional regression techniques failed to provide any support for the parabolic relationship predicted by the EKC hypothesis. Here, we introduce the use of quantile regression and spatial filtering to reanalyze this data, addressing issues of heteroskedasticity and spatial autocorrelation. We note that preliminary analysis using these methods provides some initial evidence for an EKC. However, a series of panel analyses with country-specific dummy variables eliminated or even reversed much of this support. A closer examination of conservation practices and environmental indicators within the countries, particularly those countries that drove our initial support, suggests that wealth is not a reliable indicator of improved conservation practice. Our findings indicate that an EKC for biodiversity is overly simplistic and further exploration is required to fully understand the mechanisms by which income affects biodiversity. (author)

Spatial patterns of biodiversity conservation in a multiregional general equilibrium model

NARCIS (Netherlands)

Eppink, F.V.; Withagen, C.A.A.M.

2009-01-01

Migration dynamics and local biodiversity are interrelated in a way that is likely to affect patterns of regional specialisation. We assess this relationship with a New Economic Geography model that has been extended with biodiversity. Biodiversity is heterogeneous, and responds to habitat

Host Ecology Rather Than Host Phylogeny Drives Amphibian Skin Microbial Community Structure in the Biodiversity Hotspot of Madagascar

Science.gov (United States)

Bletz, Molly C.; Archer, Holly; Harris, Reid N.; McKenzie, Valerie J.; Rabemananjara, Falitiana C. E.; Rakotoarison, Andolalao; Vences, Miguel

2017-01-01

Host-associated microbiotas of vertebrates are diverse and complex communities that contribute to host health. In particular, for amphibians, cutaneous microbial communities likely play a significant role in pathogen defense; however, our ecological understanding of these communities is still in its infancy. Here, we take advantage of the fully endemic and locally species-rich amphibian fauna of Madagascar to investigate the factors structuring amphibian skin microbiota on a large scale. Using amplicon-based sequencing, we evaluate how multiple host species traits and site factors affect host bacterial diversity and community structure. Madagascar is home to over 400 native frog species, all of which are endemic to the island; more than 100 different species are known to occur in sympatry within multiple rainforest sites. We intensively sampled frog skin bacterial communities, from over 800 amphibians from 89 species across 30 sites in Madagascar during three field visits, and found that skin bacterial communities differed strongly from those of the surrounding environment. Richness of bacterial operational taxonomic units (OTUs) and phylogenetic diversity differed among host ecomorphs, with arboreal frogs exhibiting lower richness and diversity than terrestrial and aquatic frogs. Host ecomorphology was the strongest factor influencing microbial community structure, with host phylogeny and site parameters (latitude and elevation) explaining less but significant portions of the observed variation. Correlation analysis and topological congruency analyses revealed little to no phylosymbiosis for amphibian skin microbiota. Despite the observed geographic variation and low phylosymbiosis, we found particular OTUs that were differentially abundant between particular ecomorphs. For example, the genus Pigmentiphaga (Alcaligenaceae) was significantly enriched on arboreal frogs, Methylotenera (Methylophilaceae) was enriched on aquatic frogs, and Agrobacterium (Rhizobiaceae

Host Ecology Rather Than Host Phylogeny Drives Amphibian Skin Microbial Community Structure in the Biodiversity Hotspot of Madagascar

Directory of Open Access Journals (Sweden)

Molly C. Bletz

2017-08-01

Full Text Available Host-associated microbiotas of vertebrates are diverse and complex communities that contribute to host health. In particular, for amphibians, cutaneous microbial communities likely play a significant role in pathogen defense; however, our ecological understanding of these communities is still in its infancy. Here, we take advantage of the fully endemic and locally species-rich amphibian fauna of Madagascar to investigate the factors structuring amphibian skin microbiota on a large scale. Using amplicon-based sequencing, we evaluate how multiple host species traits and site factors affect host bacterial diversity and community structure. Madagascar is home to over 400 native frog species, all of which are endemic to the island; more than 100 different species are known to occur in sympatry within multiple rainforest sites. We intensively sampled frog skin bacterial communities, from over 800 amphibians from 89 species across 30 sites in Madagascar during three field visits, and found that skin bacterial communities differed strongly from those of the surrounding environment. Richness of bacterial operational taxonomic units (OTUs and phylogenetic diversity differed among host ecomorphs, with arboreal frogs exhibiting lower richness and diversity than terrestrial and aquatic frogs. Host ecomorphology was the strongest factor influencing microbial community structure, with host phylogeny and site parameters (latitude and elevation explaining less but significant portions of the observed variation. Correlation analysis and topological congruency analyses revealed little to no phylosymbiosis for amphibian skin microbiota. Despite the observed geographic variation and low phylosymbiosis, we found particular OTUs that were differentially abundant between particular ecomorphs. For example, the genus Pigmentiphaga (Alcaligenaceae was significantly enriched on arboreal frogs, Methylotenera (Methylophilaceae was enriched on aquatic frogs, and Agrobacterium

Host Ecology Rather Than Host Phylogeny Drives Amphibian Skin Microbial Community Structure in the Biodiversity Hotspot of Madagascar.

Science.gov (United States)

Bletz, Molly C; Archer, Holly; Harris, Reid N; McKenzie, Valerie J; Rabemananjara, Falitiana C E; Rakotoarison, Andolalao; Vences, Miguel

2017-01-01

Host-associated microbiotas of vertebrates are diverse and complex communities that contribute to host health. In particular, for amphibians, cutaneous microbial communities likely play a significant role in pathogen defense; however, our ecological understanding of these communities is still in its infancy. Here, we take advantage of the fully endemic and locally species-rich amphibian fauna of Madagascar to investigate the factors structuring amphibian skin microbiota on a large scale. Using amplicon-based sequencing, we evaluate how multiple host species traits and site factors affect host bacterial diversity and community structure. Madagascar is home to over 400 native frog species, all of which are endemic to the island; more than 100 different species are known to occur in sympatry within multiple rainforest sites. We intensively sampled frog skin bacterial communities, from over 800 amphibians from 89 species across 30 sites in Madagascar during three field visits, and found that skin bacterial communities differed strongly from those of the surrounding environment. Richness of bacterial operational taxonomic units (OTUs) and phylogenetic diversity differed among host ecomorphs, with arboreal frogs exhibiting lower richness and diversity than terrestrial and aquatic frogs. Host ecomorphology was the strongest factor influencing microbial community structure, with host phylogeny and site parameters (latitude and elevation) explaining less but significant portions of the observed variation. Correlation analysis and topological congruency analyses revealed little to no phylosymbiosis for amphibian skin microbiota. Despite the observed geographic variation and low phylosymbiosis, we found particular OTUs that were differentially abundant between particular ecomorphs. For example, the genus Pigmentiphaga (Alcaligenaceae) was significantly enriched on arboreal frogs, Methylotenera (Methylophilaceae) was enriched on aquatic frogs, and Agrobacterium (Rhizobiaceae

Taxonomy, biodiversity and management of knowledge in Asia

NARCIS (Netherlands)

Ng, F.S.P.

2002-01-01

At the Biodiversity 2000 Kuching Conference in November 2000, I put forward the thesis that biodiversity is a knowledge resource, and that Asian societies have an attitude problem with respect to the management of knowledge (Ng, 2001). I offered the following evidence: In AD 304, Chi Han published

Conserving Earth's Biodiversity. [CD-ROM and] Instructor's Manual.

Science.gov (United States)

2000

This CD-ROM is designed as an interactive learning tool to support teaching in highly interdisciplinary fields such as conservation of biodiversity. Topics introduced in the software include the impact of humans on natural landscapes, threats to biodiversity, methods and theories of conservation biology, environmental laws, and relevant economic…

Can Artificial Ecosystems Enhance Local Biodiversity? The Case of a Constructed Wetland in a Mediterranean Urban Context.

Science.gov (United States)

De Martis, Gabriele; Mulas, Bonaria; Malavasi, Veronica; Marignani, Michela

2016-05-01

Constructed wetlands (CW) are considered a successful tool to treat wastewater in many countries: their success is mainly assessed observing the rate of pollution reduction, but CW can also contribute to the conservation of ecosystem services. Among the many ecosystem services provided, the biodiversity of CW has received less attention. The EcoSistema Filtro (ESF) of the Molentargius-Saline Regional Natural Park is a constructed wetland situated in Sardinia (Italy), built to filter treated wastewater, increase habitat diversity, and enhance local biodiversity. A floristic survey has been carried out yearly 1 year after the construction of the artificial ecosystem in 2004, observing the modification of the vascular flora composition in time. The flora of the ESF accounted for 54% of the whole Regional Park's flora; alien species amount to 12%; taxa of conservation concern are 6%. Comparing the data in the years, except for the biennium 2006/2007, we observed a continuous increase of species richness, together with an increase of endemics, species of conservation concern, and alien species too. Once the endemics appeared, they remained part of the flora, showing a good persistence in the artificial wetland. Included in a natural park, but trapped in a sprawling and fast growing urban context, this artificial ecosystem provides multiple uses, by preserving and enhancing biodiversity. This is particularly relevant considering that biodiversity can act as a driver of sustainable development in urban areas where most of the world's population lives and comes into direct contact with nature.

Can Artificial Ecosystems Enhance Local Biodiversity? The Case of a Constructed Wetland in a Mediterranean Urban Context

Science.gov (United States)

De Martis, Gabriele; Mulas, Bonaria; Malavasi, Veronica; Marignani, Michela

2016-05-01

Constructed wetlands (CW) are considered a successful tool to treat wastewater in many countries: their success is mainly assessed observing the rate of pollution reduction, but CW can also contribute to the conservation of ecosystem services. Among the many ecosystem services provided, the biodiversity of CW has received less attention. The EcoSistema Filtro (ESF) of the Molentargius-Saline Regional Natural Park is a constructed wetland situated in Sardinia (Italy), built to filter treated wastewater, increase habitat diversity, and enhance local biodiversity. A floristic survey has been carried out yearly 1 year after the construction of the artificial ecosystem in 2004, observing the modification of the vascular flora composition in time. The flora of the ESF accounted for 54 % of the whole Regional Park's flora; alien species amount to 12 %; taxa of conservation concern are 6 %. Comparing the data in the years, except for the biennium 2006/2007, we observed a continuous increase of species richness, together with an increase of endemics, species of conservation concern, and alien species too. Once the endemics appeared, they remained part of the flora, showing a good persistence in the artificial wetland. Included in a natural park, but trapped in a sprawling and fast growing urban context, this artificial ecosystem provides multiple uses, by preserving and enhancing biodiversity. This is particularly relevant considering that biodiversity can act as a driver of sustainable development in urban areas where most of the world's population lives and comes into direct contact with nature.

A Survey of African Grey Parrots (Psittacus Erithacus) Trade and ...

African Journals Online (AJOL)

Choice-Academy

and trafficking in the Ikpan Forest Block of Oban group of forest, Nigeria. The surveys ... and conservation education are recommended for sustainable biodiversity conservation in Nigeria. ..... conservation, as well as eco-tourism for lovers.

How discordant morphological and molecular evolution among microorganisms can revise our notions of biodiversity on earth

Science.gov (United States)

Lahr, Daniel J. G.; Laughinghouse, H. Dail; Oliverio, Angela; Gao, Feng; Katz, Laura A.

2014-01-01

Microscopy has revealed a tremendous diversity of bacterial and eukaryotic forms. More recent molecular analyses show discordance in estimates of biodiversity based on morphological analyses. Moreover, phylogenetic analyses of the diversity of microbial forms have revealed evidence of convergence at scales as large as interdomain – i.e. convergent forms shared between bacteria and eukaryotes. Here, we highlight examples of such discordance, focusing on exemplary lineages such as testate amoebae, ciliates and cyanobacteria, which have long histories of morphological study. We discuss examples in two categories: 1) morphologically identical (or highly similar) individuals that are genetically distinct and 2) morphologically distinct individuals that are genetically distinct. We argue that hypotheses about discordance can be tested using the concept of neutral morphologies, or more broadly neutral phenotypes, as a null hypothesis. PMID:25156897

Biodiversity of Soil Microbial Communities Following Woody Plant Invasion of Grassland: An Assessment Using Molecular Methods

Science.gov (United States)

Kantola, I. B.; Gentry, T. J.; Filley, T. R.; Boutton, T. W.

2012-12-01

Woody plants have encroached into grasslands, savannas, and other grass-dominated ecosystems throughout the world during the last century. This dramatic vegetation change is likely driven by livestock grazing, altered fire frequencies, elevated atmospheric CO2 concentrations, and/or changes in atmospheric deposition patterns. Woody invasion often results in significant changes in ecosystem function, including alterations in above- and belowground primary productivity, soil C, N, and P storage and turnover, and the size and activity of the soil microbial biomass pool. The purpose of this study was to examine the relationships and interactions between plant communities and soil microbial communities in the Rio Grande Plains region of southern Texas where grasslands have been largely replaced by woodlands. Research was conducted along a successional chronosequence representing the stages of woody plant encroachment from open grassland to closed-canopy woodland. To characterize soil microbial community composition, soil samples (0-7.5 cm) were collected in remnant grasslands (representing time 0) and near the centers of woody plant clusters, groves, and drainage woodlands ranging in age from 10 to 130 yrs. Ages of woody plant stands were determined by dendrochronology. Community DNA was extracted from each soil sample with a MoBio PowerMax Soil DNA isolation kit. The DNA concentrations were quantified on a NanoDrop ND-1000 spectrophotometer and diluted to a standard concentration. Pyrosequencing was performed by the Research and Testing Laboratory (Lubbock, TX) according to Roche 454 Titanium chemistry protocols. Samples were amplified with primers 27F and 519R for bacteria, and primers ITS1F and ITS4 for fungi. Sequences were aligned using BioEdit and the RDP Pipeline and analyzed in MOTHUR. Non-metric multidimensional scaling of the operational taxonomic units identified by pyrosequencing revealed that both bacterial and fungal community composition were

Biodiversity funds and conservation needs in the EU under climate change.

Science.gov (United States)

Lung, Tobias; Meller, Laura; van Teeffelen, Astrid J A; Thuiller, Wilfried; Cabeza, Mar

2014-07-01

Despite ambitious biodiversity policy goals, less than a fifth of the European Union's (EU) legally protected species and habitats show a favorable conservation status. The recent EU biodiversity strategy recognizes that climate change adds to the challenge of halting biodiversity loss, and that an optimal distribution of financial resources is needed. Here, we analyze recent EU biodiversity funding from a climate change perspective. We compare the allocation of funds to the distribution of both current conservation priorities (within and beyond Natura 2000) and future conservation needs at the level of NUTS-2 regions, using modelled bird distributions as indicators of conservation value. We find that funding is reasonably well aligned with current conservation efforts but poorly fit with future needs under climate change, indicating obstacles for implementing adaptation measures. We suggest revising EU biodiversity funding instruments for the 2014-2020 budget period to better account for potential climate change impacts on biodiversity.

Analysis of Reptile Biodiversity and Ecosystem Services within ...

Science.gov (United States)

A focus for resource management, conservation planning, and environmental decision analysis has been mapping and quantifying biodiversity and ecosystem services. The challenge has been to integrate ecology with economics to better understand the effects of human policies and actions and their subsequent impacts on human well-being and ecosystem function. Biodiversity is valued by humans in varied ways, and thus is an important input to include in assessing the benefits of ecosystems to humans. Some biodiversity metrics more clearly reflect ecosystem services (e.g., game species, threatened and endangered species), whereas others may indicate indirect and difficult to quantify relationships to services (e.g., taxa richness and cultural value). In the present study, we identify and map reptile biodiversity and ecosystem services metrics. The importance of reptiles to biodiversity and ecosystems services is not often described. We used species distribution models for reptiles in the conterminous United States from the U.S. Geological Survey’s Gap Analysis Program. We focus on species richness metrics including all reptile species richness, taxa groupings of lizards, snakes and turtles, NatureServe conservation status (G1, G2, G3) species, IUCN listed reptiles, threatened and endangered species, Partners in Amphibian and Reptile Conservation listed reptiles, and rare species. These metrics were analyzed with the Protected Areas Database of the United States to

Dimensions of biodiversity loss

NARCIS (Netherlands)

Palma, De Adriana; Kuhlmann, Michael; Bugter, Rob; Ferrier, Simon; Hoskins, Andrew J.; Potts, Simon G.; Roberts, Stuart P.M.; Schweiger, Oliver; Purvis, Andy

2017-01-01

Aim: Agricultural intensification and urbanization are important drivers of biodiversity change in Europe. Different aspects of bee community diversity vary in their sensitivity to these pressures, as well as independently influencing ecosystem service provision (pollination). To obtain a more

'Citizen science' recording of fossils by adapting existing computer-based biodiversity recording tools

Science.gov (United States)

McGowan, Alistair

2014-05-01

Biodiversity recording activities have been greatly enhanced by the emergence of online schemes and smartphone applications for recording and sharing data about a wide variety of flora and fauna. As a palaeobiologist, one of the areas of research I have been heavily involved in is the question of whether the amount of rock available to sample acts as a bias on our estimates of biodiversity through time. Although great progress has been made on this question over the past ten years by a number of researchers, I still think palaeontology has not followed the lead offered by the 'citizen science' revolution in studies of extant biodiversity. By constructing clearly structured surveys with online data collection support, it should be possible to collect field data on the occurrence of fossils at the scale of individual exposures, which are needed to test competing hypotheses about these effects at relatively small spatial scales. Such data collection would be hard to justify for universities and museums with limited personnel but a co-ordinated citizen science programme would be capable of delivering such a programme. Data collection could be based on the MacKinnon's Lists method, used in rapid conservation assessment work. It relies on observers collecting lists of a fixed length (e.g. 10 species long) but what is important is that it focuses on getting observers to ignore sightings of the same species until that list is complete. This overcomes the problem of 'common taxa being commonly recorded' and encourages observers to seek out and identify the rarer taxa. This gives a targeted but finite task. Rather than removing fossils, participants would be encouraged to take photographs to share via a recording website. The success of iSpot, which allows users to upload photos of plants and animals for other users to help with identifications, offers a model for overcoming the problems of identifying fossils, which can often look nothing like the examples illustrated in

Cross-roads of planet earth's life : exploring means to meet the 2010 biodiversity target : solution-oriented scenarios for Global Biodiversity Outlook 2

NARCIS (Netherlands)

Brink, ten B.J.E.; Alkemade, R.; Bakkenes, M.; Clement, J.; Eickhout, B.; Fish, L.; Heer, de H.; Kram, T.; Manders, T.; Meijl, van H.; Miles, L.; Nellemann, C.; Lysenko, I.; Oorschot, van M.; Smout, F.; Tabeau, A.A.; Vuuren, van D.; Westhoek, H.

2007-01-01

A scenario study from 2000 to 2050 has been performed (by Natuur en Milieuplanbureau, UNEP and WCMC) to explore the effects of future economic, demographic and technical developments on environmental pressures and global biodiversity. Policy options that affect global biodiversity were analysed on

Temporal and spatial changes of microbial community in an industrial effluent receiving area in Hangzhou Bay.

Science.gov (United States)

Zhang, Yan; Chen, Lujun; Sun, Renhua; Dai, Tianjiao; Tian, Jinping; Zheng, Wei; Wen, Donghui

2016-06-01

Anthropogenic activities usually contaminate water environments, and have led to the eutrophication of many estuaries and shifts in microbial communities. In this study, the temporal and spatial changes of the microbial community in an industrial effluent receiving area in Hangzhou Bay were investigated by 454 pyrosequencing. The bacterial community showed higher richness and biodiversity than the archaeal community in all sediments. Proteobacteria dominated in the bacterial communities of all the samples; Marine_Group_I and Methanomicrobia were the two dominant archaeal classes in the effluent receiving area. PCoA and AMOVA revealed strong seasonal but minor spatial changes in both bacterial and archaeal communities in the sediments. The seasonal changes of the bacterial community were less significant than those of the archaeal community, which mainly consisted of fluctuations in abundance of a large proportion of longstanding species rather than the appearance and disappearance of major archaeal species. Temperature was found to positively correlate with the dominant bacteria, Betaproteobacteria, and negatively correlate with the dominant archaea, Marine_Group_I; and might be the primary driving force for the seasonal variation of the microbial community. Copyright © 2016. Published by Elsevier B.V.

Psychrophilic and Psychrotolerant Microbial Extremophiles in Polar Environments

Science.gov (United States)

Hoover, Richard B.; Pikuta, Elena V.

2010-01-01

The microbial extremophiles that inhabit the polar regions of our planet are of tremendous significance. The psychrophilic and psychrotolerant microorganisms, which inhabit all of the cold environments on Earth have important applications to Bioremediation, Medicine, Pharmaceuticals, and many other areas of Biotechnology. Until recently, most of the research on polar microorganisms was confined to studies of polar diatoms, yeast, fungi and cyanobacteria. However, within the past three decades, extensive studies have been conducted to understand the bacteria and archaea that inhabit the Arctic and Antarctic sea-ice, glaciers, ice sheets, permafrost and the cryptoendolithic, cryoconite and ice-bubble environments. These investigations have resulted in the discovery of many new genera and species of anaerobic and aerobic microbial extremophiles. Exotic enzymes, cold-shock proteins and pigments produced by some of the extremophiles from polar environments have the potential to be of great benefit to Mankind. Knowledge about microbial life in the polar regions is crucial to understanding the limitations and biodiversity of life on Earth and may provide valuable clues to the Origin of Life on Earth. The discovery of viable microorganisms in ancient ice from the Fox Tunnel, Alaska and the deep Vostok Ice has shown that microorganisms can remain alive while cryopreserved in ancient ice. The psychrophilic lithoautotrophic homoacetogen isolated from the deep anoxic trough of Lake Untersee is an ideal candidate for life that might inhabit comets or the polar caps of Mars. The spontaneous release of gas from within the Anuchin Glacier above Lake Untersee may provide clues to the ice geysers that erupt from the tiger stripe regions of Saturn s moon Enceladus. The methane productivity in the lower regimes of Lake Untersee may also provide insights into possible mechanisms for the recently discovered methane releases on Mars. Since most of the other water bearing bodies of our

Biodiversity increases the resistance of ecosystem productivity to climate extremes.

Science.gov (United States)

Isbell, Forest; Craven, Dylan; Connolly, John; Loreau, Michel; Schmid, Bernhard; Beierkuhnlein, Carl; Bezemer, T Martijn; Bonin, Catherine; Bruelheide, Helge; de Luca, Enrica; Ebeling, Anne; Griffin, John N; Guo, Qinfeng; Hautier, Yann; Hector, Andy; Jentsch, Anke; Kreyling, Jürgen; Lanta, Vojtěch; Manning, Pete; Meyer, Sebastian T; Mori, Akira S; Naeem, Shahid; Niklaus, Pascal A; Polley, H Wayne; Reich, Peter B; Roscher, Christiane; Seabloom, Eric W; Smith, Melinda D; Thakur, Madhav P; Tilman, David; Tracy, Benjamin F; van der Putten, Wim H; van Ruijven, Jasper; Weigelt, Alexandra; Weisser, Wolfgang W; Wilsey, Brian; Eisenhauer, Nico

2015-10-22

It remains unclear whether biodiversity buffers ecosystems against climate extremes, which are becoming increasingly frequent worldwide. Early results suggested that the ecosystem productivity of diverse grassland plant communities was more resistant, changing less during drought, and more resilient, recovering more quickly after drought, than that of depauperate communities. However, subsequent experimental tests produced mixed results. Here we use data from 46 experiments that manipulated grassland plant diversity to test whether biodiversity provides resistance during and resilience after climate events. We show that biodiversity increased ecosystem resistance for a broad range of climate events, including wet or dry, moderate or extreme, and brief or prolonged events. Across all studies and climate events, the productivity of low-diversity communities with one or two species changed by approximately 50% during climate events, whereas that of high-diversity communities with 16-32 species was more resistant, changing by only approximately 25%. By a year after each climate event, ecosystem productivity had often fully recovered, or overshot, normal levels of productivity in both high- and low-diversity communities, leading to no detectable dependence of ecosystem resilience on biodiversity. Our results suggest that biodiversity mainly stabilizes ecosystem productivity, and productivity-dependent ecosystem services, by increasing resistance to climate events. Anthropogenic environmental changes that drive biodiversity loss thus seem likely to decrease ecosystem stability, and restoration of biodiversity to increase it, mainly by changing the resistance of ecosystem productivity to climate events.

Biodiversity and productivity

Science.gov (United States)

M.R. Willig

2011-01-01

Researchers predict that human activities especially landscape modification and climate change will have a considerable impact on the distribution and abundance of species at local, regional, and global scales in the 21st century ( 1, 2). This is a concern for a number of reasons, including the potential loss of goods and services that biodiversity provides to people...

The BiSciCol Triplifier: bringing biodiversity data to the Semantic Web.

Science.gov (United States)

Stucky, Brian J; Deck, John; Conlin, Tom; Ziemba, Lukasz; Cellinese, Nico; Guralnick, Robert

2014-07-29

Recent years have brought great progress in efforts to digitize the world's biodiversity data, but integrating data from many different providers, and across research domains, remains challenging. Semantic Web technologies have been widely recognized by biodiversity scientists for their potential to help solve this problem, yet these technologies have so far seen little use for biodiversity data. Such slow uptake has been due, in part, to the relative complexity of Semantic Web technologies along with a lack of domain-specific software tools to help non-experts publish their data to the Semantic Web. The BiSciCol Triplifier is new software that greatly simplifies the process of converting biodiversity data in standard, tabular formats, such as Darwin Core-Archives, into Semantic Web-ready Resource Description Framework (RDF) representations. The Triplifier uses a vocabulary based on the popular Darwin Core standard, includes both Web-based and command-line interfaces, and is fully open-source software. Unlike most other RDF conversion tools, the Triplifier does not require detailed familiarity with core Semantic Web technologies, and it is tailored to a widely popular biodiversity data format and vocabulary standard. As a result, the Triplifier can often fully automate the conversion of biodiversity data to RDF, thereby making the Semantic Web much more accessible to biodiversity scientists who might otherwise have relatively little knowledge of Semantic Web technologies. Easy availability of biodiversity data as RDF will allow researchers to combine data from disparate sources and analyze them with powerful linked data querying tools. However, before software like the Triplifier, and Semantic Web technologies in general, can reach their full potential for biodiversity science, the biodiversity informatics community must address several critical challenges, such as the widespread failure to use robust, globally unique identifiers for biodiversity data.

Vegetation survey: a new focus for Applied Vegetation Science

NARCIS (Netherlands)

Chytry, M.; Schaminee, J.H.J.; Schwabe, A.

2011-01-01

Vegetation survey is an important research agenda in vegetation science. It defines vegetation types and helps understand differences among them, which is essential for both basic ecological research and applications in biodiversity conservation and environmental monitoring. In this editorial, we

Can vineyard biodiversity be beneficial for viticulture and tourism?

Science.gov (United States)

Hervé, Morgane; Kratschmer, Sophie; Gregorich, Claudia; Silvia, Winter; Montembault, David; Zaller, Johann G.; Guernion, Muriel; Jung, Vincent; Schuette, Rebekka; Paredes, Daniel; Guzman Diaz, Gema; Cabezas Luque, Jose Manuel; Hoble, Adela; Popescu, Daniela; Burel, Françoise; Cluzeau, Daniel; Bergmann, Holger; Potthoff, Martin; Nicolai, Annegret

2017-04-01

The European research BiodivERsA project VineDivers aims to link ecosystem services and vine production, in an integrative approach that considers both landscape structure and cultural practices (cover-crops versus bare soils), in vineyards of Austria, France, Romania and Spain. Such services studied are (i) provisioning and regulation services by soil biota and pollinators, and (ii) landscape cultural services. In this study, we want to know if landscape beneficial for biodiversity providing ecosystem services at a plot scale also have an aesthetical value. An interdisciplinary approach was chosen to include both ecological and sociological data. First, we analyzed the influence of soil management practices and landscape complexity on soil biota, inter-row flora and bees. Second, we implemented a questionnaire based on photographs about biodiversity perception and visual aesthetic evaluation. Our results highlighted the effect of landscape complexity and soil management intensity on biodiversity and their ecological and cultural ecosystem services. This allows us to discuss the global importance of biodiversity for a wine-producing region. Further analysis within the VineDivers project will focus on an assessment of the biodiversity importance for local viticulture economy.

Effects of household dynamics on resource consumption and biodiversity.

Science.gov (United States)

Liu, Jianguo; Daily, Gretchen C; Ehrlich, Paul R; Luck, Gary W

2003-01-30

Human population size and growth rate are often considered important drivers of biodiversity loss, whereas household dynamics are usually neglected. Aggregate demographic statistics may mask substantial changes in the size and number of households, and their effects on biodiversity. Household dynamics influence per capita consumption and thus biodiversity through, for example, consumption of wood for fuel, habitat alteration for home building and associated activities, and greenhouse gas emissions. Here we report that growth in household numbers globally, and particularly in countries with biodiversity hotspots (areas rich in endemic species and threatened by human activities), was more rapid than aggregate population growth between 1985 and 2000. Even when population size declined, the number of households increased substantially. Had the average household size (that is, the number of occupants) remained static, there would have been 155 million fewer households in hotspot countries in 2000. Reduction in average household size alone will add a projected 233 million additional households to hotspot countries during the period 2000-15. Rapid increase in household numbers, often manifested as urban sprawl, and resultant higher per capita resource consumption in smaller households pose serious challenges to biodiversity conservation.

Drivers of Pontocaspian Biodiversity Rise and Demise