WorldWideScience

Sample records for surfaces progressively overlap

  1. Overlapping constraint for variational surface reconstruction

    DEFF Research Database (Denmark)

    Aanæs, Henrik; Solem, J.E.

    2005-01-01

    In this paper a counter example, illustrating a shortcoming in most variational formulations for 3D surface estimation, is presented. The nature of this shortcoming is a lack of an overlapping constraint. A remedy for this shortcoming is presented in the form of a penalty function with an analysis...... of the effects of this function on surface motion. For practical purposes, this will only have minor influence on current methods. However, the insight provided in the analysis is likely to influence future developments in the field of variational surface reconstruction....

  2. Thickness and waviness of surface coatings formed by overlap : Modelling and experiment

    NARCIS (Netherlands)

    Ocelík, V.; Nenadl, O.; Hemmati, I.; De Hosson, J.T.M.

    2013-01-01

    Several surface engineering techniques are known that form a hard facing coating on an inexpensive substrate by a successive overlap of individual cladding tracks. Typical examples include laser cladding and laser additive manufacturing. Realistic predicting the final thickness and waviness of the c

  3. Thickness and waviness of surface coatings formed by overlap : Modelling and experiment

    NARCIS (Netherlands)

    Ocelík, V.; Nenadl, O.; Hemmati, I.; De Hosson, J.T.M.

    2013-01-01

    Several surface engineering techniques are known that form a hard facing coating on an inexpensive substrate by a successive overlap of individual cladding tracks. Typical examples include laser cladding and laser additive manufacturing. Realistic predicting the final thickness and waviness of the

  4. Dispersion regions overlapping for bulk and surface polaritons in a magnetic-semiconductor superlattice

    CERN Document Server

    Fesenko, Volodymyr I; Tuz, Vladimir R

    2016-01-01

    Extraordinary dispersion features of both bulk and surface polaritons in a finely-stratified magnetic-semiconductor structure which is under an action of an external static magnetic field in the Voigt geometry are discussed in this letter. It is shown that the conditions for total overlapping dispersion regions of simultaneous existence of bulk and surface polaritons can be reached providing a conscious choice of the constitutive parameters and material fractions for both magnetic and semiconductor subsystems.

  5. A technique to decrease surface roughness in overlapping laser shock peening

    Science.gov (United States)

    Dai, Fengze; Zhou, Jianzhong; Lu, Jinzhong; Luo, Xinmin

    2016-05-01

    A technique called elastic contact laser shock peening (ECLSP) is presented in this paper. In this technique, a metal foil with high dynamic yield strength is fixed between absorbing layer and workpiece, and the peak pressure of laser shock wave is a little less than the dynamic yield strength of metal foil, but higher than the Hugoniot Elastic Limit (HEL) of work piece. Surface roughness, microhardness and residual stress are investigated. Compared with regular laser shock peening (LSP), ECLSP can reduce the depth and area of secondary plastic deformation of overlapping region. This can effectively reduce surface roughness in overlapping LSP. Measurement of microhardness and residual stress shows that the work hardening effects and strengthening effect are similar as regular LSP.

  6. Density functional theory of liquid crystals and surface anchoring: hard Gaussian overlap-sphere and hard Gaussian overlap-surface potentials.

    Science.gov (United States)

    Avazpour, A; Avazpour, L

    2010-12-28

    This article applies the density functional theory to confined liquid crystals, comprised of ellipsoidal shaped particles interacting through the hard Gaussian overlap (HGO) potential. The extended restricted orientation model proposed by Moradi and co-workers [J. Phys.: Condens. Matter 17, 5625 (2005)] is used to study the surface anchoring. The excess free energy is calculated as a functional expansion of density around a reference homogeneous fluid. The pair direct correlation function (DCF) of a homogeneous HGO fluid is approximated, based on the optimized sum of Percus-Yevick and Roth DCF for hard spheres; the anisotropy introduced by means of the closest approach parameter, the expression proposed by Marko [Physica B 392, 242 (2007)] for DCF of HGO, and hard ellipsoids were used. In this study we extend an our previous work [Phys. Rev. E 72, 061706 (2005)] on the anchoring behavior of hard particle liquid crystal model, by studying the effect of changing the particle-substrate contact function instead of hard needle-wall potentials. We use the two particle-surface potentials: the HGO-sphere and the HGO-surface potentials. The average number density and order parameter profiles of a confined HGO fluid are obtained using the two particle-wall potentials. For bulk isotropic liquid, the results are in agreement with the Monte Carlo simulation of Barmes and Cleaver [Phys. Rev. E 71, 021705 (2005)]. Also, for the bulk nematic phase, the theory gives the correct density profile and order parameter between the walls.

  7. Progress in surface and membrane science

    CERN Document Server

    Danielli, J F; Cadenhead, D A

    1973-01-01

    Progress in Surface and Membrane Science, Volume 6 covers the developments in the study of surface and membrane science. The book discusses the progress in surface and membrane science; the solid state chemistry of the silver halide surface; and the experimental and theoretical aspects of the double layer at the mercury-solution interface. The text also describes contact-angle hysteresis; ion binding and ion transport produced by neutral lipid-soluble molecules; and the biophysical interactions of blood proteins with polymeric and artificial surfaces. Physical chemists, biophysicists, and phys

  8. Progress in surface and membrane science

    CERN Document Server

    Cadenhead, D A

    1977-01-01

    Progress in Surface and Membrane Science, Volume 11 covers the advances in the study of surface and membrane science. The book discusses the quantum theory of surface phenomena; some fundamental aspects of electrocrystallization; and exoelectric emission. The text also describes the surface of titanium dioxide; and the prospects for atomic resolution electron microscopy in membranology. Chemists, physicists, and people involved in the electrochemical power laboratory will find the book useful.

  9. Progress in surface and membrane science

    CERN Document Server

    Cadenhead, D A

    1979-01-01

    Progress in Surface and Membrane Science, Volume 12 covers the advances in the study of surface and membrane science. The book discusses the topographical differentiation of the cell surface; the NMR studies of model biological membrane system; and an irreversible thermodynamic approach to energy coupling in mitochondria and chloroplasts. The text also describes water at surfaces; the nature of microemulsions; and the energy principle in the stability of interfaces. Biochemists, physicists, chemical engineers, and people involved in surface and coatings research will find the book invaluable.

  10. Progress in surface and membrane science

    CERN Document Server

    Danielli, J F; Cadenhead, D A

    1971-01-01

    Progress in Surface and Membrane Science, Volume 4 covers the developments in the study of surface and membrane science. The book discusses waves at interfaces; recent investigations on the thickness of surface layers; and surface analysis by low-energy electron diffraction and Auger electron spectroscopy. The text also describes the anode electrolyte interface; the interactions of adsorbed proteins and polypeptides at interfaces; and peptide-induced ion transport in synthetic and biological membranes. The monolayer adsorption on crystalline surfaces is also considered. Chemists and metallurgi

  11. Toward surface quantification of liver fibrosis progression

    Science.gov (United States)

    He, Yuting; Kang, Chiang Huen; Xu, Shuoyu; Tuo, Xiaoye; Trasti, Scott; Tai, Dean C. S.; Raja, Anju Mythreyi; Peng, Qiwen; So, Peter T. C.; Rajapakse, Jagath C.; Welsch, Roy; Yu, Hanry

    2010-09-01

    Monitoring liver fibrosis progression by liver biopsy is important for certain treatment decisions, but repeated biopsy is invasive. We envision redefinition or elimination of liver biopsy with surface scanning of the liver with minimally invasive optical methods. This would be possible only if the information contained on or near liver surfaces accurately reflects the liver fibrosis progression in the liver interior. In our study, we acquired the second-harmonic generation and two-photon excitation fluorescence microscopy images of liver tissues from bile duct-ligated rat model of liver fibrosis. We extracted morphology-based features, such as total collagen, collagen in bile duct areas, bile duct proliferation, and areas occupied by remnant hepatocytes, and defined the capsule and subcapsular regions on the liver surface based on image analysis of features. We discovered a strong correlation between the liver fibrosis progression on the anterior surface and interior in both liver lobes, where biopsy is typically obtained. The posterior surface exhibits less correlation with the rest of the liver. Therefore, scanning the anterior liver surface would obtain similar information to that obtained from biopsy for monitoring liver fibrosis progression.

  12. Recent progress in surface science v.2

    CERN Document Server

    Danielli, J F; Riddiford, A C

    1964-01-01

    Recent Progress in Surface Science, Volume 2 is a 10-chapter text that covers the significant advances in some aspects of surface science, including in catalysis, genetic control of cell surface, and cell membrane. The opening chapter deals with the major factors affecting adsorption at the gas-solid interface. The subsequent chapters explore the advances in understanding of heterogeneous catalysis in terms of fundamental surface processes, as well as the concept of dynamic contact angles. These topics are followed by discussions on emulsions, flotation, and the extraordinary complexity of cel

  13. Progress in surface and membrane science

    CERN Document Server

    Danielli, J F; Cadenhead, D A

    1972-01-01

    Progress in Surface and Membrane Science, Volume 5 covers the developments in the study of surface and membrane science. The book discusses the Mössbauer effect in surface science; the surface functional groups on carbon and silica; and the wetting phenomena pertaining to adhesion. The text also describes the physical state of phospholipids and cholesterol in monolayers, bilayers, and membranes; the characteristics of heterocoagulation; and the effects of calcium on excitable membranes and neurotransmitter action. Chemists, physiologists, biophysicists, and civil engineers will find the book i

  14. Progress in surface and membrane science

    CERN Document Server

    Cadenhead, D A; Rosenberg, M D

    1974-01-01

    Progress in Surface and Membrane Science, Volume 8 covers the developments in the study of surface and membrane science. The book discusses the applications of statistical mechanics to physical adsorption; the impact of electron spectroscopy and cognate techniques on the study of solid surfaces; and the ellipsometric studies of thin films. The text also describes the interfacial photochemistry of bilayer lipid membranes; cell junctions and their development; and the composition and function of the inner mitochondrial membrane. The role of the cell surface in contact inhibition of cell division

  15. Progress in surface and membrane science

    CERN Document Server

    Cadenhead, D A; Rosenberg, M D

    1975-01-01

    Progress in Surface and Membrane Science, Volume 9 covers the developments in surface and membrane science. The book discusses the physical adsorption of gases and vapors in micropores; the chemisorption theory; and the role of radioisotopes in the studies of chemisorption and catalysis. The text also describes the interaction of ions with monolayers; and the isolation and characterization of mycoplasma membranes. Chemists, physical chemists, and microbiologists will find the book useful.

  16. Effect of atmospheric gases, surface albedo and cloud overlap on the absorbed solar radiation

    Directory of Open Access Journals (Sweden)

    Ashok Sinha

    Full Text Available Recent studies have provided new evidence that models may systematically underestimate cloud solar absorption compared to observations. This study extends previous work on this "absorption anomaly'' by using observational data together with solar radiative transfer parameterisations to calculate fs (the ratio of surface and top of the atmosphere net cloud forcings and its latitudinal variation for a range of cloud types. Principally, it is found that (a the zonal mean behaviour of fs varies substantially with cloud type, with the highest values obtained for low clouds; (b gaseous absorption and scattering can radically alter the pattern of the variation of fs with latitude, but gaseous effects cannot in general raise fs to the level of around 1.5 as recently determined; (c the importance of the gaseous contribution to the atmospheric ASR is such that whilst fs rises with surface albedo, the net cloud contribution to the atmospheric ASR falls; (d the assumed form of the degree of cloud overlap in the model can substantially affect the cloud contribution to the atmospheric ASR whilst leaving the parameter fs largely unaffected; (e even large uncertainties in the observed optical depths alone cannot account for discrepancies apparent between modelled and newly observed cloud solar absorption. It is concluded that the main source of the anomaly may derive from the considerable uncertainties regarding impure droplet microphysics rather than, or together with, uncertainties in macroscopic quantities. Further, variable surface albedos and gaseous effects may limit the use of contemporaneous satellite and ground-based measurements to infer the cloud solar absorption from the parameter fs.

  17. Progress in surface and membrane science

    CERN Document Server

    Cadenhead, D A

    1976-01-01

    Progress in Surface and Membrane Science, Volume 10 covers the advances in surface and membrane science. The book discusses the selective changes of cellular particles influencing sedimentation properties; and the rotating disk and ring-disk electrodes in investigations of surface phenomena at the metal-electrolyte interface. The text also describes the membrane potential of phospholipid bilayer and biological membranes; the adsorption of surfactant monolayers at gas/liquid and liquid/liquid interfaces; and the enzymes immobilized on glass. Chemists and people involved in electrochemistry will

  18. Progress in surface and membrane science

    CERN Document Server

    Cadenhead, D A

    1981-01-01

    Progress in Surface and Membrane Science, Volume 14 covers the advances in the study of surface and membrane science. The book discusses statistical thermodynamics of monolayer adsorption from gas and liquid mixtures on homogeneous and heterogeneous solid surfaces; and the structure of the boundary layers of liquids and its influence on the mass transfer in fine pores. The text then describes the coupling of ionic and non-electrolyte fluxes in ion selective membranes; the electrocatalytic properties of matalloporphins at the interface; and the adsorption from binary gas and liquid phases. Phas

  19. Progress in surface and membrane science

    CERN Document Server

    Danielli, J F; Cadenhead, D A

    1973-01-01

    Progress in Surface and Membrane Science, Volume 7 covers the developments in the study of surface and membrane science. The book discusses the theoretical and experimental aspects of the van der Waals forces; the electric double layer on the semiconductor-electrolyte interface; and the long-range and short-range order in adsorbed films. The text also describes the hydrodynamical theory of surface shear viscosity; the structure and properties of monolayers of synthetic polypeptides at the air-water interface; and the structure and molecular dynamics of water. The role of glycoproteins in cell

  20. Overlapping DNA Methylation Dynamics in Mouse Intestinal Cell Differentiation and Early Stages of Malignant Progression

    Science.gov (United States)

    Forn, Marta; Díez-Villanueva, Anna; Merlos-Suárez, Anna; Muñoz, Mar; Lois, Sergi; Carriò, Elvira; Jordà, Mireia; Bigas, Anna; Batlle, Eduard; Peinado, Miguel A.

    2015-01-01

    Mouse models of intestinal crypt cell differentiation and tumorigenesis have been used to characterize the molecular mechanisms underlying both processes. DNA methylation is a key epigenetic mark and plays an important role in cell identity and differentiation programs and cancer. To get insights into the dynamics of cell differentiation and malignant transformation we have compared the DNA methylation profiles along the mouse small intestine crypt and early stages of tumorigenesis. Genome-scale analysis of DNA methylation together with microarray gene expression have been applied to compare intestinal crypt stem cells (EphB2high), differentiated cells (EphB2negative), ApcMin/+ adenomas and the corresponding non-tumor adjacent tissue, together with small and large intestine samples and the colon cancer cell line CT26. Compared with late stages, small intestine crypt differentiation and early stages of tumorigenesis display few and relatively small changes in DNA methylation. Hypermethylated loci are largely shared by the two processes and affect the proximities of promoter and enhancer regions, with enrichment in genes associated with the intestinal stem cell signature and the PRC2 complex. The hypermethylation is progressive, with minute levels in differentiated cells, as compared with intestinal stem cells, and reaching full methylation in advanced stages. Hypomethylation shows different signatures in differentiation and cancer and is already present in the non-tumor tissue adjacent to the adenomas in ApcMin/+ mice, but at lower levels than advanced cancers. This study provides a reference framework to decipher the mechanisms driving mouse intestinal tumorigenesis and also the human counterpart. PMID:25933092

  1. Loop Subdivision Surface Based Progressive Interpolation

    Institute of Scientific and Technical Information of China (English)

    Fu-Hua (Frank) Cheng; Feng-Tao Fan; Shu-Hua Lai; Cong-Lin Huang; Jia-Xi Wang; Jun-Hai Yong

    2009-01-01

    A new method for constructing interpolating Loop subdivision surfaces is presented. The new method is an extension of the progressive interpolation technique for B-splines. Given a triangular mesh M, the idea is to iteratively upgrade the vertices of M to generate a new control mesh M such that limit surface of M would interpolate M. It can be shown that the iterative process is convergent for Loop subdivision surfaces. Hence, the method is well-defined. The new method has the advantages of both a local method and a global method, i.e., it can handle meshes of any size and any topology while generating smooth interpolating subdivision surfaces that faithfully resemble the shape of the given meshes. The meshes considered here can be open or closed.

  2. Recent progress in surface science 3

    CERN Document Server

    Danielli, J F; Rosenberg, M D

    2013-01-01

    Recent Progress in Surface Science, Volume 3 covers topics on the structure and mechanisms of the cell membranes. The book discusses the incorporation of chemisorbed species; the recent developments in the study of epitaxy; and the ""diffusion"" or ""hydride"" component of overpotential at cathodes of the ""platinum metals"". The text also describes the mechanism of hydrogen exchange in proteins; the nuclear magnetic resonance studies of lipids, lipoproteins, and cell membranes; and the monolayers of synthetic phospholipids. The formation, electrical properties, transport, and excitability cha

  3. Surfaces and spaces: troubleshooting the study of dietary niche space overlap between North American stem primates and rodents

    Science.gov (United States)

    Prufrock, Kristen A.; López-Torres, Sergi; Silcox, Mary T.; Boyer, Doug M.

    2016-06-01

    Dental topographic metrics provide quantitative, biologically meaningful data on the three-dimensional (3D) form of teeth. In this study, three dental topographic metrics (Dirichlet normal energy (DNE), relief index (RFI), and orientation patch count rotated (OPCR)) are used to evaluate the presence of dietary niche overlap between North American plesiadapoid primates (Plesiadapidae, Carpolestidae, and Saxonellidae) and early rodents. Calculation of these metrics requires researchers to modify the 3D surface models of the teeth by cropping them to a region of interest and/or orienting them. The current study therefore also examines the error introduced by cropping and orientation, and evaluates the contribution of these metrics to the niche overlap hypothesis. Our results indicate that cropping creates significantly more variation in RFI than DNE. Furthermore, orientation is an even larger source of variation in the calculation of RFI than cropping. Orientation does not strongly influence OPCR values. However, none of these sources of error are significant enough to undermine the extent to which these metrics can speak to the niche overlap hypothesis. The DNE and RFI results suggest that carpolestids and saxonellids had very different molar morphologies from early rodents, and thus these groups were not adapted to consume the same resources. Some plesiadapids show similar levels of occlusal curvature, relief, and complexity to early rodents. The plesiadapid Chiromyoides, which has distinctively low cusps and weak shearing crest development, has molars that are the most rodent-like of all taxa compared. This suggests that Chiromyoides had a dietary niche that overlapped with early rodents and would have been the most likely to be competing over food resources. Results from the plesiadapoid-rodent dental topographic analysis highlight the utility of DNE for detecting more fine-scaled differences in occlusal surface morphology than OPCR, whereas RFI provided valuable

  4. Overlapping antigenic repertoires of variant antigens expressed on the surface of erythrocytes infected by Plasmodium falciparum

    DEFF Research Database (Denmark)

    Giha, H A; Staalsoe, T; Dodoo, D;

    1999-01-01

    Antibodies against variable antigens expressed on the surface of Plasmodium falciparum-infected erythrocytes are believed to be important for protection against malaria. A target for these antibodies is the P. falciparum erythrocyte membrane protein 1, PfEMP1, which is encoded by around 50 var...... genes and undergoes clonal variation. Using agglutination and mixed agglutination tests and flow cytometry to analyse the recognition of variant antigens on parasitized erythrocytes by plasma antibodies from individuals living in Daraweesh in eastern Sudan, an area of seasonal and unstable malaria...

  5. Registration of partially overlapping surfaces for range image based augmented reality on mobile devices

    Science.gov (United States)

    Kilgus, T.; Franz, A. M.; Seitel, A.; Marz, K.; Bartha, L.; Fangerau, M.; Mersmann, S.; Groch, A.; Meinzer, H.-P.; Maier-Hein, L.

    2012-02-01

    Visualization of anatomical data for disease diagnosis, surgical planning, or orientation during interventional therapy is an integral part of modern health care. However, as anatomical information is typically shown on monitors provided by a radiological work station, the physician has to mentally transfer internal structures shown on the screen to the patient. To address this issue, we recently presented a new approach to on-patient visualization of 3D medical images, which combines the concept of augmented reality (AR) with an intuitive interaction scheme. Our method requires mounting a range imaging device, such as a Time-of-Flight (ToF) camera, to a portable display (e.g. a tablet PC). During the visualization process, the pose of the camera and thus the viewing direction of the user is continuously determined with a surface matching algorithm. By moving the device along the body of the patient, the physician is given the impression of looking directly into the human body. In this paper, we present and evaluate a new method for camera pose estimation based on an anisotropic trimmed variant of the well-known iterative closest point (ICP) algorithm. According to in-silico and in-vivo experiments performed with computed tomography (CT) and ToF data of human faces, knees and abdomens, our new method is better suited for surface registration with ToF data than the established trimmed variant of the ICP, reducing the target registration error (TRE) by more than 60%. The TRE obtained (approx. 4-5 mm) is promising for AR visualization, but clinical applications require maximization of robustness and run-time.

  6. Microhardness changes of surface layer of HS 6-5-2 steel in the areas overlapping remelting obtained with the use of GTAW method

    OpenAIRE

    A. Bylica; Dziedzic, A.

    2008-01-01

    The work presents test results of microhardness of surface layer of HS 6-5-2 high-speed steel from areas overlapping remelting. Thesurface layer of the steel was remelted using the GTAW method. The microhardness was measured using the Vickers method. The workshows that the area, where the heat influence zone of the second remelting overlapping on the first remelting zone is characterizes by the microhardness lower about approx. 200 HV0,065.

  7. Chemical Reactions at Surfaces. Final Progress Report

    Energy Technology Data Exchange (ETDEWEB)

    None

    2003-02-21

    The Gordon Research Conference (GRC) on Chemical Reactions at Surfaces was held at Holiday Inn, Ventura, California, 2/16-21/03. Emphasis was placed on current unpublished research and discussion of the future target areas in this field.

  8. Interaction of Vortices with a progressive Surface Wave

    Institute of Scientific and Technical Information of China (English)

    LinlinWANG; HuiyangMA

    1996-01-01

    Interaction of submerged vortices with a progressive surface wave is investigated by the finite-difference numerical solution of Navier-Stokes equations.The progressive wave is the surface gravity water wave in a finite depth.The initial vortex model is Oseen vortex.The numerical computations show that a special pattern of the wave surface may be observed by the interaction from the submerged vortices.The influences of Froude number,the initial geometric configuration of vortices,and the amplitude,inital phase of surface wave on the wave pattern are discussed.

  9. The Progress on Laser Surface Modification Techniques of Titanium Alloy

    Institute of Scientific and Technical Information of China (English)

    LIANG Cheng; PAN Lin; Al Ding-fei; TAO Xi-qi; XIA Chun-huai; SONG Yan

    2004-01-01

    Titanium alloy is widely used in aviation, national defence, automobile, medicine and other fields because of their advantages in lower density, corrosion resistance, and fatigue resistance etc. As titanium alloy is higher friction coefficients, weak wear resistance, bad high temperature oxidation resistance and lower biocompatibility, its applications are restricted. Using laser surface modification techniques can significantly improve the surface properties of titanium alloy. a review is given for progress on laser surface modification techniques of titanium alloy in this paper.

  10. Overlap of abnormal photoreceptor development and progressive degeneration in Leber congenital amaurosis caused by NPHP5 mutation.

    Science.gov (United States)

    Downs, Louise M; Scott, Erin M; Cideciyan, Artur V; Iwabe, Simone; Dufour, Valerie; Gardiner, Kristin L; Genini, Sem; Marinho, Luis Felipe; Sumaroka, Alexander; Kosyk, Mychajlo S; Swider, Malgorzata; Aguirre, Geoffrey K; Jacobson, Samuel G; Beltran, William A; Aguirre, Gustavo D

    2016-10-01

    Ciliary defects can result in severe disorders called ciliopathies. Mutations in NPHP5 cause a ciliopathy characterized by severe childhood onset retinal blindness, Leber congenital amaurosis (LCA), and renal disease. Using the canine NPHP5-LCA model we compared human and canine retinal phenotypes, and examined the early stages of photoreceptor development and degeneration, the kinetics of photoreceptor loss, the progression of degeneration and the expression profiles of selected genes. NPHP5-mutant dogs recapitulate the human phenotype of very early loss of rods, and relative retention of the central retinal cone photoreceptors that lack function. In mutant dogs, rod and cone photoreceptors have a sensory cilium, but develop and function abnormally and then rapidly degenerate; L/M cones are more severely affected than S-cones. The lack of outer segments in mutant cones indicates a ciliary dysfunction. Genes expressed in mutant rod or both rod and cone photoreceptors show significant downregulation, while those expressed only in cones are unchanged. Many genes in cell-death and -survival pathways also are downregulated. The canine disease is a non-syndromic LCA-ciliopathy, with normal renal structures and no CNS abnormalities. Our results identify the critical time points in the pathogenesis of the photoreceptor disease, and bring us closer to defining a potential time window for testing novel therapies for translation to patients.

  11. The Impact of the Hepatitis B Virus Polymerase rtA181T Mutation on Replication and Drug Resistance Is Potentially Affected by Overlapping Changes in Surface Gene

    Science.gov (United States)

    Ahn, Sung Hyun; Park, Yong Kwang; Park, Eun-Sook; Kim, Jeong Han; Kim, Doo Hyun; Lim, Keo-Heun; Jang, Moon Sun; Choe, Won Hyeok; Ko, Soon Young; Sung, In-Kyung; Kwon, So Young

    2014-01-01

    ABSTRACT The emergence of drug-resistant hepatitis B virus (HBV) is a major problem for antiviral treatment in chronic hepatitis B infection. In this study, we analyzed the evolution of drug-resistant mutations and characterized the effects of the rtA181T and rtI233V mutations on viral replication and drug resistance. We performed a clonal analysis of the HBV polymerase gene from serum samples during viral breakthrough treated with antiviral agents. A series of mutant clones containing rtA181T and/or rtI233V mutations were constructed and determined the effect of these mutations on the replication ability and drug resistance. An in vitro study revealed that the effect of the rtA181T mutation on viral replication and drug resistance is dependent on the mutations in the overlapping surface gene. Compared to the rtA181T surface missense mutation (rtA181T/sW172S), the introduction of rtA181T surface nonsense mutation (rtA181T/sW172*) resulted in decreased viral replication and increased drug resistance. Complementation assay revealed that the truncated PreS1 is responsible for reduced replication of rtA181T/sW172* mutant. Moreover, the rtA181T/sW172* mutant exhibited a defect in viral particle secretion. The rtI233V mutation that emerged during adefovir therapy reduced viral replication and conferred resistance to adefovir. Our data suggest that the impact of the rtA181T mutation on replication and drug resistance differs based on the mutation status of the corresponding surface gene. The rtI233V mutation also affects replication ability and drug resistance. This observation suggests the need for genotypic analysis of overlapping surface genes to manage antiviral drug resistance if clinical isolates harbor the rtA181T mutation. IMPORTANCE The emergence of drug-resistant HBV that are no longer susceptible to nucleos(t)ide analogues is a major problem for antiviral treatment in chronic hepatitis B infection. Among drug-resistant mutations, the single rtA181T mutation is

  12. Progressive addition lens design by optimizing NURBS surface

    Science.gov (United States)

    Liu, Yen-Liang; Hsu, Wei-Yao; Cheng, Yuan-Chieh; Su, Guo-Dung

    2011-10-01

    Progressive addition lenses (PAL) are used to compensate presbyopia, which is induced by losing accommodation of elder eyes. These eyes need different optical power provided by eye glasses while watching objects at different distance. A smaller optical power is required in further distance and a larger one in nearer zone. A progressive addition lens can provides different power requirements in one piece of lens. This paper introduces a whole process of PAL production, from design, fabrication, to measurement. The PAL is designed by optimizing NURBS surface. Parameters of merit function are adjusted to design lenses with different specifications. The simulation results confirm that the power distributes as expected and cylinders are controlled under an acceptable level. Besides, sample lenses have been fabricated and measured. We apply precise-machining to produce the molds for plastic injection. Then, the samples are produced by injecting polycorbonate to the molds. Finally, Ultra Accuracy 3D Profilemeter is used to measure the sample PALs. Practical examinations shows that our designs are achievable and feasible in practice use.

  13. Label free checkerboard assay to determine overlapping epitopes of Ebola virus VP-40 antibodies using surface plasmon resonance.

    Science.gov (United States)

    Anderson, George P; Liu, Jinny L; Zabetakis, Dan; Legler, Patricia M; Goldman, Ellen R

    2017-03-01

    Immunoassay formats, in which antibodies provide sensitivity and specificity, are often utilized to provide rapid and simple diagnostic tests. Surface plasmon resonance is frequently used to evaluate the suitability of antibodies by determining binding kinetics to agents or surrogate antigens. We used SPR to evaluate a number of commercial monoclonal antibodies as well as single domain antibodies produced in-house. All the antibodies targeted the Ebola virus viral protein 40 (VP40). We determined the ability of each antibody to bind to immobilized VP40, and ensured they did not bind Ebola glycoprotein or the nucleoprotein. A subset of the monoclonal antibodies was immobilized to characterize antigen capture in solution. It can be advantageous to utilize antibodies that recognize distinct epitopes when choosing reagents for detection and diagnostic assays. We determined the uniqueness of the epitope recognized by the anti-VP40 antibodies using a checkerboard format that exploits the 6×6 array of interactions monitored by the Bio-Rad ProteOn XPR36 SPR instrument. The results demonstrate the utility of surface plasmon resonance to characterize monoclonal and recombinant antibodies. Additionally, the analysis presented here enabled the identification of pairs of anti-VP40 antibodies which could potentially be utilized in sandwich type immunoassays for the detection of Ebola virus.

  14. Computational evolutionary analysis of the overlapped surface (S and polymerase (P region in hepatitis B virus indicates the spacer domain in P is crucial for survival.

    Directory of Open Access Journals (Sweden)

    Ping Chen

    Full Text Available INTRODUCTION: The Hepatitis B Virus (HBV genome contains four ORFs, S (surface, P (polymerase, C (core and X. S is completely overlapped by P and as a consequence the overlapping region is subject to distinctive evolutionary constraints compared to the remainder of the genome. Specifically, a non-synonymous substitution in one coding frame may produce a synonymous substitution in the alternative frame, suggesting a possible conflict between requirements for diversifying and purifying forces. To examine how these contrasting requirements are balanced within this region, we investigated the relationship amongst positive selection sites, conserved regions, epitopes and elements of protein structure to consider how HBV balances the contrasting evolutionary pressures. METHODOLOGY/RESULTS: 323 HBV genotype D genome sequences were collected and analyzed to identify sites under positive selection and highly conserved regions. Epitopes sequences were retrieved from previously published experimental studies stored in the Immune Epitope Database. Predicted secondary structures were used to investigate the association between structure and conservation. Entropy was used as a measure of conservation and bivariate logistic regression was used to investigate the relationship between positive selection/conserved sites and epitope/secondary structure regions. Our results indicate: (i conservation in S is primarily dictated by α-helix elements in the protein structure, (ii variable residues are mainly located in PreS, the major hydrophilic region (MHR and the C-terminus, (iii epitopes in S, which are directly targeted by the host immune system, are significantly associated with sites under positive selection. CONCLUSIONS: The highly variable spacer domain in P, which corresponds to PreS in S, appears to act as a harbor for the accumulation of mutations that can provide flexibility for conformational changes and responding to immune pressure.

  15. OVERLAPPING VIRTUAL CADASTRAL DOCUMENTATION

    Directory of Open Access Journals (Sweden)

    Madalina - Cristina Marian

    2013-12-01

    Full Text Available Two cadastrale plans of buildings, can overlap virtual. Overlap is highlighted when digital reception. According to Law no. 7/1996 as amended and supplemented, to solve these problems is by updating the database graphs, the repositioning. This paper addresses the issue of overlapping virtual cadastre in the history of the period 1999-2012.

  16. Fast Overlapping Group Lasso

    CERN Document Server

    Liu, Jun

    2010-01-01

    The group Lasso is an extension of the Lasso for feature selection on (predefined) non-overlapping groups of features. The non-overlapping group structure limits its applicability in practice. There have been several recent attempts to study a more general formulation, where groups of features are given, potentially with overlaps between the groups. The resulting optimization is, however, much more challenging to solve due to the group overlaps. In this paper, we consider the efficient optimization of the overlapping group Lasso penalized problem. We reveal several key properties of the proximal operator associated with the overlapping group Lasso, and compute the proximal operator by solving the smooth and convex dual problem, which allows the use of the gradient descent type of algorithms for the optimization. We have performed empirical evaluations using the breast cancer gene expression data set, which consists of 8,141 genes organized into (overlapping) gene sets. Experimental results demonstrate the eff...

  17. Research progress on theultra hydrophobic surface topography effect

    Institute of Scientific and Technical Information of China (English)

    WANG Jiadao; YU Ying; CHEN Darong

    2006-01-01

    Ultra hydrophobic surfaces take on better hydrophobicity and exhibit a water contact angle larger than 150°. In this paper the ultra hydrophobicity is analyzed and common fabrication methods are summarized in detail. The applications of micro topography in both the fabrication of hydrophobic surface and the experiments of drag reduction are addressed. Finally, the development trend and foreground of ultra hydrophobic surface are discussed.

  18. Two maize END-1 orthologs, BETL9 and BETL9like, are transcribed in a non-overlapping spatial pattern on the outer surface of the developing endosperm

    Directory of Open Access Journals (Sweden)

    Joaquín eRoyo

    2014-05-01

    Full Text Available In the course of a project aimed to isolate transfer cells-specific genes in maize endosperm we have identified the BETL9 gene. BETL9 encodes for a small protein very similar in sequence to the product of the barley transfer cell-specific gene end-1. Both BETL9 and END-1 proteins are lipid transfer proteins, but their function is currently unknown. In situ hybridization analysis confirms that the BETL9 gene is exclusively transcribed in the basal endosperm transfer cell layer during seed development since 10 days after pollination. However, immunolocalization data indicates that the BETL9 protein accumulates in the maternal placento-chalaza cells located just beside the transfer cell layer. This suggests that the BETL9 protein should be transported to the maternal side to exert its, still unknown, function. In addition, we have identified a second maize gene very similar in sequence to BETL9 and we have named it BETL9like. In situ hybridization shows that BETL9like is also specifically transcribed in the developing maize endosperm within the same time frame that BETL9, but in this case it is exclusively expressed in the aleurone cell layer. Consequently, the BETL9 and BETL9like genes are transcribed in a non-overlapping pattern on the outer surface of the maize endosperm. The BETL9 and BETL9like promoter sequences, fused to the GUS reporter gen, accurately reflected the expression pattern observed for the genes in maize. Finally, we have identified in the Arabidopsis genome a set of four genes orthologous to BETL9 and BETL9like and analysed the activity of their promoters in Arabidopsis transgenic plants carrying fusions of their promoter sequences to the GUS reporter. As in the case of the maize genes, the Arabidopsis orthologs showed highly complementary expression patterns.

  19. What do we need for a superhydrophobic surface? A review on the recent progress in the preparation of superhydrophobic surfaces

    NARCIS (Netherlands)

    Li, X.; Reinhoudt, David; Crego Calama, Mercedes

    2007-01-01

    Superhydrophobic surfaces have drawn a lot of interest both in academia and in industry because of the self-cleaning properties. This critical review focuses on the recent progress (within the last three years) in the preparation, theoretical modeling, and applications of superhydrophobic surfaces.

  20. Overlap syndromes among autoimmune liver diseases

    Institute of Scientific and Technical Information of China (English)

    Christian Rust; Ulrich Beuers

    2008-01-01

    The three major immune disorders of the liver are autoimmune hepatitis (AIH),primary biliary cirrhosis (PBC) and primary sclerosing cholangitis (PSC).Variant forms of these diseases are generally called overlap syndromes,although there has been no standardised definition.Patients with overlap syndromes present with both hepatitic and cholestatic serum liver tests and have histological features of AIH and PBC or PSC.The AIH-PBC overlap syndrome is the most common form,affecting almost 10% of adults with AIH or PBC.Single cases of AIH and autoimmune cholangitis (AMA-negative PBC) overlap syndrome have also been reported.The AIH-PSC overlap syndrome is predominantly found in children,adolescents and young adults with AIH or PSC.Interestingly,transitions from one autoimmune to another have also been reported in a minority of patients,especially transitions from PBC to AIH-PBC overlap syndrome.Overlap syndromes show a progressive course towards liver cirrhosis and liver failure without treatment.Therapy for overlap syndromes is empiric,since controlled trials are not available in these rare disorders.Anticholestatic therapy with ursodeoxycholic acid is usually combined with immunosuppressive therapy with corticosteroids and/or azathioprine in both AIH-PBC and AIH-PSC overlap syndromes.In end-stage disease,liver transplantation is the treatment of choice.

  1. Sleep overlap syndrome

    Directory of Open Access Journals (Sweden)

    Fariba Rezaeetalab

    2016-12-01

    Full Text Available Overlap syndrome, which is known as the coexistence of chronic obstructive pulmonary disease (COPD and obstructive sleep apnea (OSA, was first defined by Flenley. Although it can refer to concomitant occurrence of any of the pulmonary diseases and OSA, overlap syndrome is commonly considered as the coexistence of OSA and COPD. This disease has unique adverse health consequences distinct from either condition alone. Given the high prevalence of each solitary disease, overlap syndrome is also likely to be common and clinically relevant. Despite the fact that overlap syndrome has been described in the literature for nearly 30 years, paucity of evaluations and studies limited the discussion on diagnosis, prevalence, pathophysiology, treatment, and outcomes of this disease. This review article addresses these issues by reviewing several recent studies conducted in Iran or other countries. This review suggests that overlap syndrome has worse outcomes than either disease alone. Our findings accentuated the urgent need for further studies on overlap syndrome and all overlaps between OSA and chronic pulmonary disease to provide a deeper insight into diagnosis and non-invasive treatments of this disease.

  2. Progress in 193-nm top-surface imaging process development

    Science.gov (United States)

    Hutchinson, John M.; Rao, Veena; Zhang, Guojing; Pawloski, Adam R.; Fonseca, Carlos A.; Chambers, Janet; Holl, Susan M.; Das, Siddhartha; Henderson, Craig C.; Wheeler, David R.

    1998-06-01

    The maturity and acceptance of top surface imaging (TSI) technology has been hampered by several factors including inadequate resist sensitivity and silylation contrast, defects and line edge roughness and equipment performance/reliability issues. We found that the use of a chemically amplified resist can improve the sensitivity by a factor of 1.5 - 2X, without compromising line edge roughness. While the post-silylation contrast of this chemically amplified material is poor ((gamma) > 10) and the use of advanced silylation chemistries (disilanes) can further reduce the dose-to-size and increase the contrast. We have also demonstrated that using sulfur dioxide in the plasma etch process can improve the sidewall passivation of the resist lines, thus reducing the overall line edge roughness. Finally, we have been able to successfully use the TSI process to pattern deep sub-micron polysilicon and metal patterns.

  3. Illusion induced overlapped optics.

    Science.gov (United States)

    Zang, XiaoFei; Shi, Cheng; Li, Zhou; Chen, Lin; Cai, Bin; Zhu, YiMing; Zhu, HaiBin

    2014-01-13

    The traditional transformation-based cloak seems like it can only hide objects by bending the incident electromagnetic waves around the hidden region. In this paper, we prove that invisible cloaks can be applied to realize the overlapped optics. No matter how many in-phase point sources are located in the hidden region, all of them can overlap each other (this can be considered as illusion effect), leading to the perfect optical interference effect. In addition, a singular parameter-independent cloak is also designed to obtain quasi-overlapped optics. Even more amazing of overlapped optics is that if N identical separated in-phase point sources covered with the illusion media, the total power outside the transformation region is N2I0 (not NI0) (I0 is the power of just one point source, and N is the number point sources), which seems violating the law of conservation of energy. A theoretical model based on interference effect is proposed to interpret the total power of these two kinds of overlapped optics effects. Our investigation may have wide applications in high power coherent laser beams, and multiple laser diodes, and so on.

  4. Analysis of the influence of the overlapping factor in the laser transformation hardening of extended surfaces of steel; Analisis de la influencia del factor de solapamiento en el tratamiento termico de superficies extensas de aceros por laser

    Energy Technology Data Exchange (ETDEWEB)

    Garcia-Beltran, A.; Marin, L. F.; Ocana, J. L.

    2007-07-01

    On the basis of numerical models developed by the authors for the predictive analysis of transformation hardening of extended steel surfaces, the difficulties existing for the treatment of extended surfaces by overlapping cycles of laser heating are analyzed from a computational point of view. In this analysis, thermal and physical properties of the material are considered along with their temperature dependence. Some optimization for the irradiation parameters (including modification of the spatial distribution of the laser bean energy) are determined in order to obtain both the adequate material transformed depth and the required hardness profiles. (Author)

  5. Mimicking natural superhydrophobic surfaces and grasping the wetting process: a review on recent progress in preparing superhydrophobic surfaces.

    Science.gov (United States)

    Yan, Y Y; Gao, N; Barthlott, W

    2011-12-12

    A typical superhydrophobic (ultrahydrophobic) surface can repel water droplets from wetting itself, and the contact angle of a water droplet resting on a superhydrophobic surface is greater than 150°, which means extremely low wettability is achievable on superhydrophobic surfaces. Many superhydrophobic surfaces (both manmade and natural) normally exhibit micro- or nanosized roughness as well as hierarchical structure, which somehow can influence the surface's water repellence. As the research into superhydrophobic surfaces goes deeper and wider, it is becoming more important to both academic fields and industrial applications. In this work, the most recent progress in preparing manmade superhydrophobic surfaces through a variety of methodologies, particularly within the past several years, and the fundamental theories of wetting phenomena related to superhydrophobic surfaces are reviewed. We also discuss the perspective of natural superhydrophobic surfaces utilized as mimicking models. The discussion focuses on how the superhydrophobic property is promoted on solid surfaces and emphasizes the effect of surface roughness and structure in particular. This review aims to enable researchers to perceive the inner principles of wetting phenomena and employ suitable methods for creation and modification of superhydrophobic surfaces. Copyright © 2011 Elsevier B.V. All rights reserved.

  6. Overlap among Environmental Databases.

    Science.gov (United States)

    Miller, Betty

    1981-01-01

    Describes the methodology and results of a study comparing the overlap of Enviroline, Pollution, and the Environmental Periodicals Bibliography files through searches on acid rain, asbestos and water, diesel, glass recycling, Lake Erie, Concorde, reverse osmosis wastewater treatment cost, and Calspan. Nine tables are provided. (RBF)

  7. Separation and sequence detection of overlapped fingerprints: experiments and first results

    Science.gov (United States)

    Kärgel, Rainer; Giebel, Sascha; Leich, Marcus; Dittmann, Jana

    2011-11-01

    Latent fingerprints provide vital information in modern crime scene investigation. On frequently touched surfaces the fingerprints may overlap which poses a major problem for forensic analysis. In order to make such overlapping fingerprints available for analysis, they have to be separated. An additional evaluation of the sequence in which the fingerprints were brought onto the surface can help to reconstruct the progression of events. Advances in both tasks can considerably aid crime investigation agencies and are the subject of this work. Here, a statistical approach, initially devised for the separation of overlapping text patterns by Tonazzini et al.,1 is employed to separate overlapping fingerprints. The method involves a maximum a posteriori estimation of the single fingerprints and the mixing coefficients, computed by an expectation-maximization algorithm. A fingerprint age determination feature based on corrosion is evaluated for sequence estimation. The approaches are evaluated using 30 samples of overlapping latent fingerprints on two different substrates. The fingerprint images are acquired with a non-destructive chromatic white light surface measurement device, each sample containing exactly two fingerprints that overlap in the center of the image. Since forensic investigations rely on manual assessment of acquired fingerprints by forensics experts, a subjective scale ranging from 0 to 8 is used to rate the separation results. Our results indicate that the chosen method can separate overlapped fingerprints which exhibit strong differences in contrast, since results gradually improve with the growing contrast difference of the overlapping fingerprints. Investigating the effects of corrosion leads to a reliable determination of the fingerprints' sequence as the timespan between their leaving increases.

  8. Using Model-based Overlapping Seed Expansion to detect highly overlapping community structure

    CERN Document Server

    McDaid, Aaron F

    2010-01-01

    As research into community finding in social networks progresses, there is a need for algorithms capable of detecting overlapping community structure. Many algorithms have been proposed in recent years that are capable of assigning each node to more than a single community. The performance of these algorithms tends to degrade when the ground-truth contains a more highly overlapping community structure, with nodes assigned to more than two communities. Such highly overlapping structure is likely to exist in many social networks, such as Facebook friendship networks. In this paper we present a scalable algorithm, MOSES, based on a statistical model of community structure, which is capable of detecting highly overlapping community structure, especially when there is variance in the number of communities each node is in. In evaluation on synthetic data MOSES is found to be superior to existing algorithms, especially at high levels of overlap. We demonstrate MOSES on real social network data by analyzing the netwo...

  9. Toward a surface photoelectron diffractometer: A progress report on selected advances and an assessment

    Energy Technology Data Exchange (ETDEWEB)

    Shirley, D.A [Pennsylvania State Univ., University Park, PA (United States); Zheng, Yu; Petersen, B.L.; Hussain, Z.; Huff, W.A. [Lawrence Berkeley Lab., CA (United States); Barton, J.J. [International Business Machines Corp., Yorktown Heights, NY (United States). Thomas J. Watson Research Center; Terminello, L.J. [Lawrence Livermore National Lab., CA (United States)

    1993-10-06

    X-ray diffractometric determination of atomic structures in ordered bulk systems is highly automated and has wide application. By contrast, surface crystallography, whether based on photon or electron scattering, is still in a relatively early stage of development. A summary is given of recent selected highlights in efforts to make progress toward surface photoelectron diffractometry and holography by our Berkeley-Penn State group. It is concluded that an automated photoelectron diffractometer is practical and desirable.

  10. Offshoring and Firm Overlap

    OpenAIRE

    Schmerer, Hans-Jörg; Capuano, Stella; Egger, Hartmut; Koch, Michael

    2015-01-01

    We set up a model of offshoring with heterogeneous producers that captures two empirical regularities on offshoring firms: larger, more productive firms are more likely to make use of the offshoring opportunity; the fraction of firms that engages in offshoring is positive and smaller than one in any size or revenue category. These patterns generate an overlap of offshoring and non-offshoring firms, which is non-monotonic in the costs of offshoring. In an empirical exercise, we employ firm-lev...

  11. HUNTing the Overlap

    Energy Technology Data Exchange (ETDEWEB)

    Iancu, Costin; Parry, Husbands; Hargrove, Paul

    2005-07-08

    Hiding communication latency is an important optimization for parallel programs. Programmers or compilers achieve this by using non-blocking communication primitives and overlapping communication with computation or other communication operations. Using non-blocking communication raises two issues: performance and programmability. In terms of performance, optimizers need to find a good communication schedule and are sometimes constrained by lack of full application knowledge. In terms of programmability, efficiently managing non-blocking communication can prove cumbersome for complex applications. In this paper we present the design principles of HUNT, a runtime system designed to search and exploit some of the available overlap present at execution time in UPC programs. Using virtual memory support, our runtime implements demand-driven synchronization for data involved in communication operations. It also employs message decomposition and scheduling heuristics to transparently improve the non-blocking behavior of applications. We provide a user level implementation of HUNT on a variety of modern high performance computing systems. Results indicate that our approach is successful in finding some of the overlap available at execution time. While system and application characteristics influence performance, perhaps the determining factor is the time taken by the CPU to execute a signal handler. Demand driven synchronization at execution time eliminates the need for the explicit management of non-blocking communication. Besides increasing programmer productivity, this feature also simplifies compiler analysis for communication optimizations.

  12. Clinical Research Progress of Asthma-COPD Overlap Syndrome%哮喘-慢性阻塞性肺疾病重叠综合征的临床研究进展

    Institute of Scientific and Technical Information of China (English)

    徐飞; 董竞成

    2016-01-01

    哮喘和慢性阻塞性肺疾病(COPD)是两种不同的疾病,两者具有不同的特征,但有时难以将两者区分,尤其当哮喘患者病情加重出现类似 COPD 症状,而具有吸烟史的 COPD 患者表现出哮喘特征时,现将同时具备哮喘和 COPD 临床特征的疾病状态定为哮喘-慢性阻塞性肺疾病重叠综合征(ACOS)。本文从流行病学、病因、病理生理学特征、急性加重情况、生活质量和医疗费用、诊断标准以及治疗等方面,对 ACOS 近年的临床研究进展做一总结。%Asthma and chronic obstructive pulmonary disease( COPD) are two different diseases with different characteristics,but sometimes it is difficult to distinguish them,especially when asthma patients show COPD - like symptoms and COPD patients with history of smoking show asthma characteristics. It is now stated as asthma and chronic obstructive pulmonary disease overlap syndrome(ACOS). This article aims to sum up the progress of the recent clinical studies of ACOS from the aspects of epidemiology,etiology,pathology and physiology characteristics,acute aggravation,quality of life and health care costs,diagnostic criteria and treatment.

  13. Emerging of fractal geometry on surface of human cervical epithelial cells during progression towards cancer

    Science.gov (United States)

    Dokukin, M. E.; Guz, N. V.; Woodworth, C.D.; Sokolov, I.

    2015-01-01

    Despite considerable advances in understanding the molecular nature of cancer, many biophysical aspects of malignant development are still unclear. Here we study physical alterations of the surface of human cervical epithelial cells during stepwise in vitro development of cancer (from normal to immortal (premalignant), to malignant). We use atomic force microscopy to demonstrate that development of cancer is associated with emergence of simple fractal geometry on the cell surface. Contrary to the previously expected correlation between cancer and fractals, we find that fractal geometry occurs only at a limited period of development when immortal cells become cancerous; further cancer progression demonstrates deviation from fractal. Because of the connection between fractal behaviour and chaos (or far from equilibrium behaviour), these results suggest that chaotic behaviour coincides with the cancer transformation of the immortalization stage of cancer development, whereas further cancer progression recovers determinism of processes responsible for cell surface formation. PMID:25844044

  14. Lysyl oxidase drives tumour progression by trapping EGF receptors at the cell surface.

    Science.gov (United States)

    Tang, HaoRan; Leung, Leo; Saturno, Grazia; Viros, Amaya; Smith, Duncan; Di Leva, Gianpiero; Morrison, Eamonn; Niculescu-Duvaz, Dan; Lopes, Filipa; Johnson, Louise; Dhomen, Nathalie; Springer, Caroline; Marais, Richard

    2017-04-18

    Lysyl oxidase (LOX) remodels the tumour microenvironment by cross-linking the extracellular matrix. LOX overexpression is associated with poor cancer outcomes. Here, we find that LOX regulates the epidermal growth factor receptor (EGFR) to drive tumour progression. We show that LOX regulates EGFR by suppressing TGFβ1 signalling through the secreted protease HTRA1. This increases the expression of Matrilin2 (MATN2), an EGF-like domain-containing protein that traps EGFR at the cell surface to facilitate its activation by EGF. We describe a pharmacological inhibitor of LOX, CCT365623, which disrupts EGFR cell surface retention and delays the growth of primary and metastatic tumour cells in vivo. Thus, we show that LOX regulates EGFR cell surface retention to drive tumour progression, and we validate the therapeutic potential of inhibiting this pathway with the small molecule inhibitor CCT365623.

  15. Packing ellipsoids with overlap

    CERN Document Server

    Uhler, Caroline

    2012-01-01

    The problem of packing ellipsoids of different sizes and shapes into an ellipsoidal container so as to minimize a measure of overlap between ellipsoids is considered. A bilevel optimization formulation is given, together with an algorithm for the general case and a simpler algorithm for the special case in which all ellipsoids are in fact spheres. Convergence results are proved and computational experience is described and illustrated. The motivating application - chromosome organization in the human cell nucleus - is discussed briefly, and some illustrative results are presented.

  16. Progress on the Development of Future Airport Surface Wireless Communications Network

    Science.gov (United States)

    Kerczewski, Robert J.; Budinger, James M.; Brooks, David E.; Franklin, Morgan; DeHart, Steve; Dimond, Robert P.; Borden, Michael

    2009-01-01

    Continuing advances in airport surface management and improvements in airport surface safety are required to enable future growth in air traffic throughout the airspace, as airport arrival and departure delays create a major system bottleneck. These airport management and safety advances will be built upon improved communications, navigation, surveillance, and weather sensing, creating an information environment supporting system automation. The efficient movement of the digital data generated from these systems requires an underlying communications network infrastructure to connect data sources with the intended users with the required quality of service. Current airport surface communications consists primarily of buried copper or fiber cable. Safety related communications with mobile airport surface assets occurs over 25 kHz VHF voice and data channels. The available VHF spectrum, already congested in many areas, will be insufficient to support future data traffic requirements. Therefore, a broadband wireless airport surface communications network is considered a requirement for the future airport component of the air transportation system. Progress has been made on defining the technology and frequency spectrum for the airport surface wireless communications network. The development of a test and demonstration facility and the definition of required testing and standards development are now underway. This paper will review the progress and planned future work.

  17. A review of progress towards understanding the transient global mean surface temperature response to radiative perturbation

    Science.gov (United States)

    Yoshimori, Masakazu; Watanabe, Masahiro; Shiogama, Hideo; Oka, Akira; Abe-Ouchi, Ayako; Ohgaito, Rumi; Kamae, Youichi

    2016-12-01

    The correct understanding of the transient response to external radiative perturbation is important for the interpretation of observed climate change, the prediction of near-future climate change, and committed warming under climate stabilization scenarios, as well as the estimation of equilibrium climate sensitivity based on observation data. It has been known for some time that the radiative damping rate per unit of global mean surface temperature increase varies with time, and this inconstancy affects the transient response. Knowledge of the equilibrium response alone is insufficient, but understanding the transient response of the global mean surface temperature has made rapid progress. The recent progress accompanies the relatively new concept of the efficacies of ocean heat uptake and forcing. The ocean heat uptake efficacy associates the temperature response induced by ocean heat uptake with equilibrium temperature response, and the efficacy of forcing compares the temperature response caused by non-CO2 forcing with that by CO2 forcing.

  18. [Progress in the application of laser ablation ICP-MS to surface microanalysis in material science].

    Science.gov (United States)

    Zhang, Yong; Jia, Yun-hai; Chen, Ji-wen; Shen, Xue-jing; Liu, Ying; Zhao, Leiz; Li, Dong-ling; Hang, Peng-cheng; Zhao, Zhen; Fan, Wan-lun; Wang, Hai-zhou

    2014-08-01

    In the present paper, apparatus and theory of surface analysis is introduced, and the progress in the application of laser ablation ICP-MS to microanalysis in ferrous, nonferrous and semiconductor field is reviewed in detail. Compared with traditional surface analytical tools, such as SEM/EDS (scanning electron microscopy/energy dispersive spectrum), EPMA (electron probe microanalysis analysis), AES (auger energy spectrum), etc. the advantage is little or no sample preparation, adjustable spatial resolution according to analytical demand, multi-element analysis and high sensitivity. It is now a powerful complementary method to traditional surface analytical tool. With the development of LA-ICP-MS technology maturing, more and more analytical workers will use this powerful tool in the future, and LA-ICP-MS will be a super star in elemental analysis field just like LIBS (Laser-induced breakdown spectroscopy).

  19. [Application progress of laser-induced breakdown spectroscopy for surface analysis in materials science field].

    Science.gov (United States)

    Zhang, Yong; Jia, Yun-Hai; Chen, Ji-Wen; Liu, Ying; Shen, Xue-Jing; Zhao, Lei; Wang, Shu-Ming; Yu, Hong; Han, Peng-Cheng; Qu, Hua-Yang; Liu, Shao-Zun

    2012-06-01

    As a truly surface analytical tool, laser-induced breakdown spectroscopy (LIBS) was developed in recent ten years, and in this paper, fundamental theory, instrumentation and it's applications in material science are reviewed in detail. Application progress of elemental distribution and depth profile analysis are mainly discussed in the field of metallurgy, semiconductor and electronical materials at home and abroad. It is pointed out that the pulse energy, ambient gas and it's pressure, and energy distribution of laser beam strongly influence spatial and depth resolution, and meanwhile a approach to improving resolution considering analytical sensitivity is provided. Compared with traditional surface analytical methods, the advantage of LIBS is very large scanning area, high analytical speed, and that conducting materials or non-conducting materials both can be analyzed. It becomes a powerful complement of traditional surface analytical tool.

  20. Application of finite element, global polynomial, and kriging response surfaces in Progressive Lattice Sampling designs

    Energy Technology Data Exchange (ETDEWEB)

    ROMERO,VICENTE J.; SWILER,LAURA PAINTON; GIUNTA,ANTHONY A.

    2000-04-25

    This paper examines the modeling accuracy of finite element interpolation, kriging, and polynomial regression used in conjunction with the Progressive Lattice Sampling (PLS) incremental design-of-experiments approach. PLS is a paradigm for sampling a deterministic hypercubic parameter space by placing and incrementally adding samples in a manner intended to maximally reduce lack of knowledge in the parameter space. When combined with suitable interpolation methods, PLS is a formulation for progressive construction of response surface approximations (RSA) in which the RSA are efficiently upgradable, and upon upgrading, offer convergence information essential in estimating error introduced by the use of RSA in the problem. The three interpolation methods tried here are examined for performance in replicating an analytic test function as measured by several different indicators. The process described here provides a framework for future studies using other interpolation schemes, test functions, and measures of approximation quality.

  1. The FLIC Overlap Quark Propagator

    CERN Document Server

    Kamleh, W; Leinweber, D B; Williams, A G; Zhang, J; Kamleh, Waseem; Bowman, Patrick O.; Leinweber, Derek B.; Williams, Anthony G.; Zhang, Jianbo

    2004-01-01

    FLIC overlap fermions are a variant of the standard (Wilson) overlap action, with the FLIC (Fat Link Irrelevant Clover) action as the overlap kernel rather than the Wilson action. The structure of the FLIC overlap fermion propagator in momentum space is studied, and a comparison against previous studies of the Wilson overlap propagator in quenched QCD is performed. To explore the scaling properties of the propagator for the two actions, numerical calculations are performed in Landau Gauge across three lattices with different lattice spacing $a$ and similar physical volumes. We find that at light quark masses the acti ons agree in both the infrared and the ultraviolet, but at heavier masses some disagreement in the ultraviolet appears. This is attributed to the two action s having different discretisation errors with the FLIC overlap providing superior performance in this regime. Both actions scale reasonably, but some scaling violations are observed.

  2. Computer aided surface representation. Progress report, June 1, 1988--May 31, 1989

    Energy Technology Data Exchange (ETDEWEB)

    Barnhill, R.E.

    1989-02-09

    The central research problem of this project is the effective representation and display of surfaces, interpolating to given information, in three or more dimensions. In a typical problem, we wish to create a surface from some discrete information. If this information is itself on another surface, the problem is to determine a ``surface defined on a surface,`` which is discussed below. Often, properties of an already constructed surface are desired: such ``geometry processing`` is described below. The Summary of Proposed Research from our original proposal describes the aims of this research project. This Summary and the Table of Contents from the original proposal are enclosed as an Appendix to this Progress Report. The broad sweep from constructive mathematics through algorithms and computer graphics displays is utilized in the research. The wide range of activity, directed in both theory and applications, makes this project unique. Last month in the first Ardent Titan delivered in the State of Arizona came to our group, funded by the DOE and Arizona State University. Although the Titan is a commercial product, its newness requires our close collaboration with Ardent to maximize results. During the past year, four faculty members and several graduate research assistants have worked on this DOE project. The gaining of new professionals is an important aspect of this project. A listing of the students and their topics is given in the Appendix. The most significant publication during the past year is the book, Curves and Surfaces for Computer Aided Geometric Design, by Dr. Gerald Farin. This 300 page volume helps fill a considerable gap in the subject and includes many new results on Bernstein-Bezier curves and surfaces.

  3. Topological susceptibility from overlap fermion

    Institute of Scientific and Technical Information of China (English)

    应和平; 张剑波

    2003-01-01

    We numerically calculate the topological charge of the gauge configurations on a finite lattice by the fermionic method with overlap fermions. By using the lattice index theorem, we identify the index of the massless overlap fermion operator to the topological charge of the background gauge configuration. The resulting topological susceptibility X is in good agreement with the anticipation made by Witten and Veneziano.

  4. PET表面改性研究进展%Research progress in PET surface modification

    Institute of Scientific and Technical Information of China (English)

    王甜甜; 王晓春; 赵国樑

    2011-01-01

    The research progress in polyethylene terephthalate ( PET) surface modification was reviewed in China and abroad. The PET surface modification technologies included chemical grafting modification, ultraviolet irradiation grafting modification, high energy irradiation grafting modification, plasma grafting modification and ozone oxidizing modification. The surface modification could improve the hydrophilicity, antistatic behavior, adhesion and biocompatibility of PET. The application of modified PET was introduced in the related fields. It was pointed out that the key scientific and technical problems in PET surface modification should be solved.%综述了国内外聚对苯二甲酸乙二醇酯(PET)的表面改性研究进展.PET表面改性方法主要有:化学接枝改性、紫外光辐照接枝改性、高能射线辐照接枝改性、等离子体处理接枝改性以及臭氧氧化改性等;通过PET表面改性,可以改善PET的亲水性、抗静电性、粘附性和生物相容性等性能;介绍了改性PET在相关领域中的应用;指出PET的表面改性技术尚有许多关键科学问题和技术难题需解决.

  5. Nuclear overlap functions

    Energy Technology Data Exchange (ETDEWEB)

    Eskola, K.J. [Univ. of Helsinki (Finland); Vogt, R.; Wang, X.N. [Lawrence Berkeley Lab., CA (United States)

    1995-07-01

    A three parameter Wood-Saxon shape is used to describe the nuclear density distribution, which R{sub A} is the nuclear radius, {approx} is the surface thickness, and {omega} allows for central irregularities. The electron scattering data is used where available for R{sub A}, z, and {omega}. When data is unavailable, the parameters {omega} = O, z = 0.54 fm and R{sub A} = 1.19 A{sup 1/3} - 1.61 A{sup -1/3} fm are used. The central density {rho}{sub 0} is found from the normalization {infinity} d{sup 3}r{rho}{sub A}(r) = A.

  6. STUDY ON GLYCOCONJUGATE CHANGES ON CELL SURFACE IN PROGRESSIVE DEVELOPMENT OF PULMONARY TUMOR

    Institute of Scientific and Technical Information of China (English)

    WANG Xiao-mei; SHAN Jun; CHEN Zhuo-huai

    2002-01-01

    Aim: To investigate glycoconjugate changes on the cell surface of proliferative lesions and neoplasms of mice lungs at various stages of tumorigenesis, the relation between progressive development of mouse pulmonary tumors and expression of cell surface saccharide. Materials and methods: Thirty - one male A/J strain mice at 5 weeks of age were treated intraperitoneally with a single injection of 20 - methylcholanthrene (20 - MC), 292 pulmonary lesions including 31 hyperplasias, 145 alveolar adenomas, 61 papillary adenomas, 55 papillary adenocarcinomas and their combined type were obtained. The binding affinities of cells in normal respiratory epithelia and in proliferative lesions to four peroxidases - conjugated lectins, Maclura pomifera agglutinin (MPA), Arachis hypogea agglutinin (PNA), Ricinus communis agglutinin (RCA), and wheat germ agglutinin (WGA) were examined. Results: Cells of hyperplasia and alveolar adenoma showed fairly strong affinity to all the four lectins. However, part of papillary adenoma cells and greater part of papillary adenocarcinoma cells lost their binding affinity to MPA, PNA, and RCA, but not to WGA. The bindings of MPA, PNA and RNA were detected predominently on the luminal surfaces of benign tumors but not on the luminal surfaces of malignant tumors. WGA might bind to varied types of benign and malignant tumors. Pretreated with neuraminidase, the lesions enhanced the staining intensity for the four lectins, the binding sites of WGA to malignant tumor cells were numerous. A distinct difference in lectin binding affinity between hyperplasia / alveolar adenoma/papillary adenoma and papillary adenocarcinoma was clearly shown( x2 = 46.89, P < 0.01, x2 = 36.77, P < 0.01 and x2 = 52.87, P < 0.01 ) in this experiment. The complex glycoconjugates on the cell surface of malignant and benign lesions during the development of pulmonary tumor were changed,malignant tumor cells differed from the surface of benign tumor cells, the levels of

  7. On the Neuberger overlap operator

    Science.gov (United States)

    Boriçi, Artan

    1999-04-01

    We compute Neuberger's overlap operator by the Lanczos algorithm applied to the Wilson-Dirac operator. Locality of the operator for quenched QCD data and its eigenvalue spectrum in an instanton background are studied.

  8. Spontaneous progression of ligature induced peri-implantitis at implants with different surface roughness: an experimental study in dogs

    DEFF Research Database (Denmark)

    Berglundh, T; Gotfredsen, K; Zitzmann, N U

    2007-01-01

    BACKGROUND: Peri-implantitis is associated with the presence of submarginal plaque, soft-tissue inflammation and advanced breakdown of the supporting bone. The progression of peri-implantitis following varying periods of continuing plaque accumulation has been studied in animal models. OBJECTIVE......: The aim of the current experiment was to study the progression of peri-implantitis around implants with different surface roughness. MATERIAL AND METHODS: In five beagle dogs, three implants with either a sandblasted acid-etched surface (SLA) or a polished surface (P) were installed bilaterally...... in the edentulous premolar regions. After 3 months on a plaque control regimen, experimental peri-implantitis was induced by ligature placement and plaque accumulation was allowed to progress until about 40% of the height of the supporting bone had been lost. After this 4-month period, ligatures were removed...

  9. Spontaneous progression of ligature induced peri-implantitis at implants with different surface roughness: an experimental study in dogs.

    Science.gov (United States)

    Berglundh, T; Gotfredsen, K; Zitzmann, N U; Lang, N P; Lindhe, J

    2007-10-01

    Peri-implantitis is associated with the presence of submarginal plaque, soft-tissue inflammation and advanced breakdown of the supporting bone. The progression of peri-implantitis following varying periods of continuing plaque accumulation has been studied in animal models. The aim of the current experiment was to study the progression of peri-implantitis around implants with different surface roughness. In five beagle dogs, three implants with either a sandblasted acid-etched surface (SLA) or a polished surface (P) were installed bilaterally in the edentulous premolar regions. After 3 months on a plaque control regimen, experimental peri-implantitis was induced by ligature placement and plaque accumulation was allowed to progress until about 40% of the height of the supporting bone had been lost. After this 4-month period, ligatures were removed and plaque accumulation was continued for an additional 5 months. Radiographs of all implant sites were obtained before and after 'active' experimental peri-implantitis as well as at the end of the experiment. Biopsies were harvested and the tissue samples were prepared for light microscopy. The sections were used for histometric and morphometric examinations. The radiographic examinations indicated that similar amounts of bone loss occurred at SLA and P sites during the active breakdown period, while the progression of bone loss was larger at SLA than at polished sites following ligature removal. The histological examination revealed that both bone loss and the size of the inflammatory lesion in the connective tissue were larger in SLA than in polished implant sites. The area of plaque was also larger at implants with an SLA surface than at implants with a polished surface. It is suggested that the progression of peri-implantitis, if left untreated, is more pronounced at implants with a moderately rough surface than at implants with a polished surface.

  10. Topological susceptibility from the overlap

    CERN Document Server

    Del Debbio, L; Debbio, Luigi Del; Pica, Claudio

    2004-01-01

    The chiral symmetry at finite lattice spacing of Ginsparg-Wilson fermionic actions constrains the renormalization of the lattice operators; in particular, the topological susceptibility does not require any renormalization, when using a fermionic estimator to define the topological charge. Therefore, the overlap formalism appears as an appealing candidate to study the continuum limit of the topological susceptibility while keeping the systematic errors under theoretical control. We present results for the SU(3) pure gauge theory using the index of the overlap Dirac operator to study the topology of the gauge configurations. The topological charge is obtained from the zero modes of the overlap and using a new algorithm for the spectral flow analysis. A detailed comparison with cooling techniques is presented. Particular care is taken in assessing the systematic errors. Relatively high statistics (500 to 1000 independent configurations) yield an extrapolated continuum limit with errors that are comparable with ...

  11. Topological susceptibility from the overlap

    DEFF Research Database (Denmark)

    Del Debbio, Luigi; Pica, Claudio

    2003-01-01

    The chiral symmetry at finite lattice spacing of Ginsparg-Wilson fermionic actions constrains the renormalization of the lattice operators; in particular, the topological susceptibility does not require any renormalization, when using a fermionic estimator to define the topological charge....... Therefore, the overlap formalism appears as an appealing candidate to study the continuum limit of the topological susceptibility while keeping the systematic errors under theoretical control. We present results for the SU(3) pure gauge theory using the index of the overlap Dirac operator to study...... the topology of the gauge configurations. The topological charge is obtained from the zero modes of the overlap and using a new algorithm for the spectral flow analysis. A detailed comparison with cooling techniques is presented. Particular care is taken in assessing the systematic errors. Relatively high...

  12. Development of Surface Acoustic Wave-Based Microgyroscope Utilizing Progressive Wave

    Science.gov (United States)

    Oh, Haekwan; Yang, Sangsik; Lee, Keekeun

    2010-06-01

    An 80 MHz surface acoustic wave (SAW)-based gyroscope utilizing a progressive wave was developed on a 128° YX LiNbO3 piezoelectric substrate. The sensor developed consists of two SAW oscillators in which one is used as the sensing element and has metallic dots in the cavity between input and output interdigital transducers (IDTs). The other is used as the reference element. Coupling of modes (COM) modeling was conducted to determine the optimal device parameters prior to fabrication. On the basis of the simulation results, the device was fabricated and then measured on a rate table. When the device was subjected to an angular rotation, oscillation frequency differences between the two oscillators were observed because of the Coriolis force acting on the metallic dots. Depending on the angular velocity, the difference in oscillation frequency was modulated. The obtained sensitivity was approximately 52.35 Hz deg-1 s-1 at an angular rate range of 0-1000 deg/s. Device performances at different mass weights, mass positions, and temperatures were characterized. Good thermal stability was also observed during the evaluation process.

  13. Clique graphs and overlapping communities

    Science.gov (United States)

    Evans, T. S.

    2010-12-01

    It is shown how to construct a clique graph in which properties of cliques of a fixed order in a given graph are represented by vertices in a weighted graph. Various definitions and motivations for these weights are given. The detection of communities or clusters is used to illustrate how a clique graph may be exploited. In particular a benchmark network is shown where clique graphs find the overlapping communities accurately while vertex partition methods fail.

  14. [Syndrome overlap: autoimmune hepatitis and autoimmune cholangitis].

    Science.gov (United States)

    Guerra Montero, Luis; Ortega Alvarez, Félix; Marquez Teves, Maguin; Asato Higa, Carmen; Sumire Umeres, Julia

    2016-01-01

    Autoimmune hepatitis, primary biliary cirrhosis, primary sclerosing cholangitis and autoimmune cholangitis are chronic autoimmune liver disease, usually present separate, the cases where characteristics of two of the above is observed liver disease is commonly referred to as Overlap Syndromes (OS). Although there is no consensus on specific criteria for the diagnosis of OS identification of this association is important for initiating appropriate treatment and prevent its progression to cirrhosis or at least the complications of cirrhosis and death. We report the case of awoman aged 22 cirrhotic which debuted are edematous ascites, severe asthenia and jaundice compliant diagnostics SS criteria and initially present any response to treatment with ursodeoxycholic acid and oral corticosteroids, but ultimately finished performing a transplant orthotopic liver.

  15. Computer aided surface representation. Progress report, June 1, 1989--May 31, 1990

    Energy Technology Data Exchange (ETDEWEB)

    Barnhill, R.E.

    1990-02-19

    The central research problem of this project is the effective representation, computation, and display of surfaces interpolating to information in three or more dimensions. If the given information is located on another surface, then the problem is to construct a ``surface defined on a surface``. Sometimes properties of an already defined surface are desired, which is ``geometry processing``. Visualization of multivariate surfaces is possible by means of contouring higher dimensional surfaces. These problems and more are discussed below. The broad sweep from constructive mathematics through computational algorithms to computer graphics illustrations is utilized in this research. The breadth and depth of this research activity makes this research project unique.

  16. The surface morphology analysis based on progressive approximation method using confocal three-dimensional micro X-ray fluorescence

    Science.gov (United States)

    Yi, Longtao; Sun, Tianxi; Wang, Kai; Qin, Min; Yang, Kui; Wang, Jinbang; Liu, Zhiguo

    2016-08-01

    Confocal three-dimensional micro X-ray fluorescence (3D MXRF) is an excellent surface analysis technology. For a confocal structure, only the X-rays from the confocal volume can be detected. Confocal 3D MXRF has been widely used for analysing elements, the distribution of elements and 3D image of some special samples. However, it has rarely been applied to analysing surface topography by surface scanning. In this paper, a confocal 3D MXRF technology based on polycapillary X-ray optics was proposed for determining surface topography. A corresponding surface adaptive algorithm based on a progressive approximation method was designed to obtain surface topography. The surface topography of the letter "R" on a coin of the People's Republic of China and a small pit on painted pottery were obtained. The surface topography of the "R" and the pit are clearly shown in the two figures. Compared with the method in our previous study, it exhibits a higher scanning efficiency. This approach could be used for two-dimensional (2D) elemental mapping or 3D elemental voxel mapping measurements as an auxiliary method. It also could be used for analysing elemental mapping while obtaining the surface topography of a sample in 2D elemental mapping measurement.

  17. Progress toward unprecedented imaging of stellar surfaces with the Navy precision optical interferometer

    Science.gov (United States)

    Jorgensen, A. M.; Mozurkewich, D.; Schmitt, H. R.; van Belle, G. T.; Hutter, D. J.; Clark, J.; Armstrong, J. T.; Baines, E. K.; Newman, K.; Landavazo, M.; Sun, B.; Restaino, S. R.

    2014-07-01

    We present progress on the stellar surface imaging project recently funded by the U. S. National Science Foun- dation. With the unique layout of the Navy Precision Optical Interferometer (NPOI) in combination with data acquisition and fringe-tracking upgrades we expect to be able to substantially exceed the imaging fidelity and resolution of any other interferometer in operation. The project combines several existing advances and infras- tructure at NPOI with modest enhancements. For optimal imaging there are several requirements that should be fulfilled. The observatory should be capable of measuring visibilities on a wide range of baseline lengths and orientations, providing complete Fourier (UV) coverage in a short period of time. It should measure visibility amplitudes with good SNR on all baselines as critical imaging information is often contained in low-amplitude visibilities. It should measure the visibility phase on all baselines. The technologies which can achieve this are the NPOI Y-shaped array with (nearly) equal spacing between telescopes and an ability for rapid configuration. Placing 6-telescopes in a row makes it possible to measure visibilities into the 4th lobe of the visibility function. By arranging the 12 available telescopes carefully we can switch, every few days, between 6 different 6-station chains which provide symmetric coverage in the Fourier plane without moving any telescopes, only by moving beam relay mirrors. The 6-station chains are important to achieve the highest imaging resolution, and switching rapidly between station chains provides uniform coverage. Coherent integration techniques can be used to obtain good SNR on very small visibilities. Coherently integrated visibilities can be used for imaging with standard radio imaging packages such as AIPS. The commissioning of one additional station, the use of new data acqui- sition hardware and fringe tracking algorithms are the enhancements which are making this project a reality

  18. Supported organometallic complexes: Surface chemistry, spectroscopy, and catalysis. Progress report, March 15, 1988--July 14, 1989

    Energy Technology Data Exchange (ETDEWEB)

    Marks, T.J.

    1990-02-01

    The goal of our program is to define those modes of interaction that take place between organometallic molecules and inorganic surfaces and, ultimately, to correlate various molecule-surface structures with catalytic properties.

  19. Effect of progressive wear on the contact mechanics of hip replacements--does the realistic surface profile matter?

    Science.gov (United States)

    Wang, Ling; Yang, Wenjian; Peng, Xifeng; Li, Dichen; Dong, Shuangpeng; Zhang, Shu; Zhu, Jinyu; Jin, Zhongmin

    2015-04-13

    The contact mechanics of artificial metal-on-polyethylene hip joints are believed to affect the lubrication, wear and friction of the articulating surfaces and may lead to the joint loosening. Finite element analysis has been widely used for contact mechanics studies and good agreements have been achieved with current experimental data; however, most studies were carried out with idealist spherical geometries of the hip prostheses rather than the realistic worn surfaces, either for simplification reason or lacking of worn surface profile. In this study, the worn surfaces of the samples from various stages of hip simulator testing (0 to 5 million cycles) were reconstructed as solid models and were applied in the contact mechanics study. The simulator testing results suggested that the center of the head has various departure value from that of the cup and the value of the departure varies with progressively increased wear. This finding was adopted into the finite element study for better evaluation accuracy. Results indicated that the realistic model provided different evaluation from that of the ideal spherical model. Moreover, with the progressively increased wear, large increase of the contact pressure (from 12 to 31 MPa) was predicted on the articulating surface, and the predicted maximum von Mises stress was increased from 7.47 to 13.26 MPa, indicating the marked effect of the worn surface profiles on the contact mechanics of the joint. This study seeks to emphasize the importance of realistic worn surface profile of the acetabular cup especially following large wear volume. Copyright © 2015 Elsevier Ltd. All rights reserved.

  20. Overlap in Facebook Profiles Reflects Relationship Closeness.

    Science.gov (United States)

    Castañeda, Araceli M; Wendel, Markie L; Crockett, Erin E

    2015-01-01

    We assessed the association between self-reported Inclusion of Other in the Self (IOS) and Facebook overlap. Ninety-two participants completed online measures of IOS and investment model constructs. Researchers then recorded Facebook data from participants' profile pages. Results from multilevel models revealed that IOS predicted Facebook overlap. Furthermore, Facebook overlap was associated with commitment and investment in ways comparable to self-reported IOS. These findings suggest that overlap in Facebook profiles can be used to measure relationship closeness.

  1. Progress in remote sensing of global land surface heat fluxes and evaporations with a turbulent heat exchange parameterization method

    Science.gov (United States)

    Chen, Xuelong; Su, Bob

    2017-04-01

    Remote sensing has provided us an opportunity to observe Earth land surface with a much higher resolution than any of GCM simulation. Due to scarcity of information for land surface physical parameters, up-to-date GCMs still have large uncertainties in the coupled land surface process modeling. One critical issue is a large amount of parameters used in their land surface models. Thus remote sensing of land surface spectral information can be used to provide information on these parameters or assimilated to decrease the model uncertainties. Satellite imager could observe the Earth land surface with optical, thermal and microwave bands. Some basic Earth land surface status (land surface temperature, canopy height, canopy leaf area index, soil moisture etc.) has been produced with remote sensing technique, which already help scientists understanding Earth land and atmosphere interaction more precisely. However, there are some challenges when applying remote sensing variables to calculate global land-air heat and water exchange fluxes. Firstly, a global turbulent exchange parameterization scheme needs to be developed and verified, especially for global momentum and heat roughness length calculation with remote sensing information. Secondly, a compromise needs to be innovated to overcome the spatial-temporal gaps in remote sensing variables to make the remote sensing based land surface fluxes applicable for GCM model verification or comparison. A flux network data library (more 200 flux towers) was collected to verify the designed method. Important progress in remote sensing of global land flux and evaporation will be presented and its benefits for GCM models will also be discussed. Some in-situ studies on the Tibetan Plateau and problems of land surface process simulation will also be discussed.

  2. Generation of non-overlapping fiber architecture

    DEFF Research Database (Denmark)

    Chapelle, Lucie; Lévesque, M.; Brøndsted, Povl

    2015-01-01

    of overlapping sphero-cylinders. At the end of the first step, a system of overlapping fibers is obtained. In order to obtain a hard-core configuration where fibers cannot overlap other fibers, we use an iterative method called the force-biased algorithm. It applies virtual forces on each point of the fiber...

  3. On Multigrid for Overlapping Grids

    Energy Technology Data Exchange (ETDEWEB)

    Henshaw, W

    2004-01-13

    The solution of elliptic partial differential equations on composite overlapping grids using multigrid is discussed. An approach is described that provides a fast and memory efficient scheme for the solution of boundary value problems in complex geometries. The key aspects of the new scheme are an automatic coarse grid generation algorithm, an adaptive smoothing technique for adjusting residuals on different component grids, and the use of local smoothing near interpolation boundaries. Other important features include optimizations for Cartesian component grids, the use of over-relaxed Red-Black smoothers and the generation of coarse grid operators through Galerkin averaging. Numerical results in two and three dimensions show that very good multigrid convergence rates can be obtained for both Dirichlet and Neumann/mixed boundary conditions. A comparison to Krylov based solvers shows that the multigrid solver can be much faster and require significantly less memory.

  4. Overlapping Structures in Sensory-Motor Mappings

    Science.gov (United States)

    Earland, Kevin; Lee, Mark; Shaw, Patricia; Law, James

    2014-01-01

    This paper examines a biologically-inspired representation technique designed for the support of sensory-motor learning in developmental robotics. An interesting feature of the many topographic neural sheets in the brain is that closely packed receptive fields must overlap in order to fully cover a spatial region. This raises interesting scientific questions with engineering implications: e.g. is overlap detrimental? does it have any benefits? This paper examines the effects and properties of overlap between elements arranged in arrays or maps. In particular we investigate how overlap affects the representation and transmission of spatial location information on and between topographic maps. Through a series of experiments we determine the conditions under which overlap offers advantages and identify useful ranges of overlap for building mappings in cognitive robotic systems. Our motivation is to understand the phenomena of overlap in order to provide guidance for application in sensory-motor learning robots. PMID:24392118

  5. Feature selective temporal prediction of Alzheimer's disease progression using hippocampus surface morphometry

    National Research Council Canada - National Science Library

    Tsao, Sinchai; Gajawelli, Niharika; Zhou, Jiayu; Shi, Jie; Ye, Jieping; Wang, Yalin; Leporé, Natasha

    2017-01-01

    In this work, we present our results of using machine learning to predict temporal behavior changes in Alzheimers Disease using entire topological feature maps of the hippocampus surface (2100 feature points...

  6. Recent progress on magnetic iron oxide nanoparticles: synthesis, surface functional strategies and biomedical applications

    Science.gov (United States)

    Wu, Wei; Wu, Zhaohui; Yu, Taekyung; Jiang, Changzhong; Kim, Woo-Sik

    2015-04-01

    This review focuses on the recent development and various strategies in the preparation, microstructure, and magnetic properties of bare and surface functionalized iron oxide nanoparticles (IONPs); their corresponding biological application was also discussed. In order to implement the practical in vivo or in vitro applications, the IONPs must have combined properties of high magnetic saturation, stability, biocompatibility, and interactive functions at the surface. Moreover, the surface of IONPs could be modified by organic materials or inorganic materials, such as polymers, biomolecules, silica, metals, etc. The new functionalized strategies, problems and major challenges, along with the current directions for the synthesis, surface functionalization and bioapplication of IONPs, are considered. Finally, some future trends and the prospects in these research areas are also discussed.

  7. Cortical thickness, surface area and volume measures in Parkinson's disease, multiple system atrophy and progressive supranuclear palsy.

    Directory of Open Access Journals (Sweden)

    Amanda Worker

    Full Text Available Parkinson's disease (PD, Multiple System Atrophy (MSA and Progressive Supranuclear Palsy (PSP are neurodegenerative diseases that can be difficult to distinguish clinically. The objective of the current study was to use surface-based analysis techniques to assess cortical thickness, surface area and grey matter volume to identify unique morphological patterns of cortical atrophy in PD, MSA and PSP and to relate these patterns of change to disease duration and clinical features.High resolution 3D T1-weighted MRI volumes were acquired from 14 PD patients, 18 MSA, 14 PSP and 19 healthy control participants. Cortical thickness, surface area and volume analyses were carried out using the automated surface-based analysis package FreeSurfer (version 5.1.0. Measures of disease severity and duration were assessed for correlation with cortical morphometric changes in each clinical group.Results show that in PSP, widespread cortical thinning and volume loss occurs within the frontal lobe, particularly the superior frontal gyrus. In addition, PSP patients also displayed increased surface area in the pericalcarine. In comparison, PD and MSA did not display significant changes in cortical morphology.These results demonstrate that patients with clinically established PSP exhibit distinct patterns of cortical atrophy, particularly affecting the frontal lobe. These results could be used in the future to develop a useful clinical application of MRI to distinguish PSP patients from PD and MSA patients.

  8. Research Progress on Ocular Surface Changes after Fem-tosecond Laser Small Incision Lenticule Extraction

    Institute of Scientific and Technical Information of China (English)

    Xiangfei Chen; Yan Lu; Chunhong Wang; Zhenping Huang

    2015-01-01

    The femtosecond laser has a number of advantages,.such as short pulse time,.high instantaneous power,.high repetition rate, low monopulse energy, and small thermal effect. Fem-tosecond laser-assisted small incision lenticule extraction (SMILE) is becoming the new direction in refractive surgery, and the ocular surface changes after SMILE are attracting in-creasingly more attention. This article reviews adverse effects, including dry eye, injury of corneal nerves, and ocular sur-face inflammation,.occurring after SMILE.

  9. Supported organometallic complexes: Surface chemistry, spectroscopy, and catalysis. Progress report, February 1, 1991--January 31, 1992

    Energy Technology Data Exchange (ETDEWEB)

    Marks, T.J.

    1992-02-01

    The long-range goal of this project is to elucidate and understand the surface chemistry and catalytic properties of well-defined, highly-reactive organometallic molecules (principally based upon abundant actinide, lanthanide, and early transition elements) adsorbed on metal oxides and halides. The nature of the adsorbed species is probed by a battery of chemical and physicochemical techniques, to understand the nature of the molecular-surface coordination chemistry and how this can give rise to extremely high catalytic activity. A complementary objective is to delineate the scope and mechanisms of the heterogeneous catalytic reactions, as well as to relate them both conceptually and functionally to model systems generated in solution.

  10. Stitching interferometry of a full cylinder without using overlap areas

    Science.gov (United States)

    Peng, Junzheng; Chen, Dingfu; Yu, Yingjie

    2017-08-01

    Traditional stitching interferometry requires finding out the overlap correspondence and computing the discrepancies in the overlap regions, which makes it complex and time-consuming to obtain the 360° form map of a cylinder. In this paper, we develop a cylinder stitching model based on a new set of orthogonal polynomials, termed Legendre Fourier (LF) polynomials. With these polynomials, individual subaperture data can be expanded as a composition of the inherent form of a partial cylinder surface and additional misalignment parameters. Then the 360° form map can be acquired by simultaneously fitting all subaperture data with the LF polynomials. A metal shaft was measured to experimentally verify the proposed method. In contrast to traditional stitching interferometry, our technique does not require overlapping of adjacent subapertures, thus significantly reducing the measurement time and making the stitching algorithm simple.

  11. Evaluation of laser fluorescence in monitoring non-cavitated caries lesion progression on smooth surfaces in vitro.

    Science.gov (United States)

    Rodrigues, J A; Sarti, C S; Assunção, C M; Arthur, R A; Lussi, A; Diniz, M B

    2017-07-02

    The aim of this study was to evaluate the performance of a pen-type laser fluorescence (LF) device (LFpen: DIAGNOdent pen) to detect and monitor the progression of caries-like lesions on smooth surfaces. Fifty-two bovine enamel blocks were submitted to three different demineralisation cycles for caries-like lesion induction using Streptococcus mutans, Lactobacillus casei and Actinomyces naeslundii. At baseline and after each cycle, the enamel blocks were analysed under Knoop surface micro-hardness (SMH) and an LFpen. One enamel block after each cycle was randomly chosen for Raman spectroscopy analysis. Cross-sectional micro-hardness (CSMH) was performed at different depths (20, 40, 60, 80 and 100 μm) in 26 enamel blocks after the second cycle and 26 enamel blocks after the third cycle. Average values of SMH (± standard deviation (SD)) were 319.3 (± 21.5), 80.5 (± 31.9), 39.8 (± 12.7), and 29.77 (± 10.34) at baseline and after the first, second and third cycles, respectively. Statistical significant difference was found among all periods (p  0.05). One sample of each cycle was characterised through Raman spectroscopy analysis. It can be concluded that LF was effective in detecting the first demineralisation on enamel; however, the method did not show any effect in monitoring lesion progression after three cycles of in vitro demineralisation.

  12. Solving Partial Differential Equations on Overlapping Grids

    Energy Technology Data Exchange (ETDEWEB)

    Henshaw, W D

    2008-09-22

    We discuss the solution of partial differential equations (PDEs) on overlapping grids. This is a powerful technique for efficiently solving problems in complex, possibly moving, geometry. An overlapping grid consists of a set of structured grids that overlap and cover the computational domain. By allowing the grids to overlap, grids for complex geometries can be more easily constructed. The overlapping grid approach can also be used to remove coordinate singularities by, for example, covering a sphere with two or more patches. We describe the application of the overlapping grid approach to a variety of different problems. These include the solution of incompressible fluid flows with moving and deforming geometry, the solution of high-speed compressible reactive flow with rigid bodies using adaptive mesh refinement (AMR), and the solution of the time-domain Maxwell's equations of electromagnetism.

  13. Overlapped frequency-time division multiplexing

    Institute of Scientific and Technical Information of China (English)

    JIANG Hui; LI Dao-ben

    2009-01-01

    A technique named overlapped frequency-time division multiplexing (OVFTDM)) is proposed in this article. The technique is derived from Nyquist system and frequency-time division multiplexing system. When the signals are compactly overlapped without the orthogonality in time domain, the technique is named overlapped time division multiplexing (OVTDM), whereas when signals are compactly overlapped without the orthogonality in frequency domain, the technique is called overlapped frequency division multiplexing (OVFDM). To further improve spectral efficiency, the OVFTDM in which signals are overlapped both in frequency domain and in time domain is explored. OVFTDM does not depend on orthogonality whatever in time domain or in frequency domain like Nyquist system or OFDM system, but on the convolutional constraint relationship among signals. Therefore, not only the spectral efficiency but also the reliability is improved. The simulations verify the validity of this theory.

  14. Progressive FastICA Peel-Off and Convolution Kernel Compensation Demonstrate High Agreement for High Density Surface EMG Decomposition

    Science.gov (United States)

    Chen, Maoqi

    2016-01-01

    Decomposition of electromyograms (EMG) is a key approach to investigating motor unit plasticity. Various signal processing techniques have been developed for high density surface EMG decomposition, among which the convolution kernel compensation (CKC) has achieved high decomposition yield with extensive validation. Very recently, a progressive FastICA peel-off (PFP) framework has also been developed for high density surface EMG decomposition. In this study, the CKC and PFP methods were independently applied to decompose the same sets of high density surface EMG signals. Across 91 trials of 64-channel surface EMG signals recorded from the first dorsal interosseous (FDI) muscle of 9 neurologically intact subjects, there were a total of 1477 motor units identified from the two methods, including 969 common motor units. On average, 10.6 ± 4.3 common motor units were identified from each trial, which showed a very high matching rate of 97.85 ± 1.85% in their discharge instants. The high degree of agreement of common motor units from the CKC and the PFP processing provides supportive evidence of the decomposition accuracy for both methods. The different motor units obtained from each method also suggest that combination of the two methods may have the potential to further increase the decomposition yield. PMID:27642525

  15. Progressive FastICA Peel-Off and Convolution Kernel Compensation Demonstrate High Agreement for High Density Surface EMG Decomposition.

    Science.gov (United States)

    Chen, Maoqi; Holobar, Ales; Zhang, Xu; Zhou, Ping

    2016-01-01

    Decomposition of electromyograms (EMG) is a key approach to investigating motor unit plasticity. Various signal processing techniques have been developed for high density surface EMG decomposition, among which the convolution kernel compensation (CKC) has achieved high decomposition yield with extensive validation. Very recently, a progressive FastICA peel-off (PFP) framework has also been developed for high density surface EMG decomposition. In this study, the CKC and PFP methods were independently applied to decompose the same sets of high density surface EMG signals. Across 91 trials of 64-channel surface EMG signals recorded from the first dorsal interosseous (FDI) muscle of 9 neurologically intact subjects, there were a total of 1477 motor units identified from the two methods, including 969 common motor units. On average, 10.6 ± 4.3 common motor units were identified from each trial, which showed a very high matching rate of 97.85 ± 1.85% in their discharge instants. The high degree of agreement of common motor units from the CKC and the PFP processing provides supportive evidence of the decomposition accuracy for both methods. The different motor units obtained from each method also suggest that combination of the two methods may have the potential to further increase the decomposition yield.

  16. Progressive FastICA Peel-Off and Convolution Kernel Compensation Demonstrate High Agreement for High Density Surface EMG Decomposition

    Directory of Open Access Journals (Sweden)

    Maoqi Chen

    2016-01-01

    Full Text Available Decomposition of electromyograms (EMG is a key approach to investigating motor unit plasticity. Various signal processing techniques have been developed for high density surface EMG decomposition, among which the convolution kernel compensation (CKC has achieved high decomposition yield with extensive validation. Very recently, a progressive FastICA peel-off (PFP framework has also been developed for high density surface EMG decomposition. In this study, the CKC and PFP methods were independently applied to decompose the same sets of high density surface EMG signals. Across 91 trials of 64-channel surface EMG signals recorded from the first dorsal interosseous (FDI muscle of 9 neurologically intact subjects, there were a total of 1477 motor units identified from the two methods, including 969 common motor units. On average, 10.6±4.3 common motor units were identified from each trial, which showed a very high matching rate of 97.85±1.85% in their discharge instants. The high degree of agreement of common motor units from the CKC and the PFP processing provides supportive evidence of the decomposition accuracy for both methods. The different motor units obtained from each method also suggest that combination of the two methods may have the potential to further increase the decomposition yield.

  17. Progress in Understanding Land-Surface-Atmosphere Coupling from LBA Research

    Directory of Open Access Journals (Sweden)

    Alan K Betts

    2010-06-01

    Full Text Available LBA research has deepened our understanding of the role of soil water storage, clouds and aerosols in land-atmosphere coupling. We show how the reformulation of cloud forcing in terms of an effective cloud albedo per unit area of surface gives a useful measure of the role of clouds in the surface energy budget over the Amazon. We show that the diurnal temperature range has a quasi-linear relation to the daily mean longwave cooling; and to effective cloud albedo because of the tight coupling between the near-surface climate, the boundary layer and the cloud field. The coupling of surface and atmospheric processes is critical to the seasonal cycle: deep forest rooting systems make water available throughout the year, whereas in the dry season the shortwave cloud forcing is reduced by regional scale subsidence, so that more light is available for photosynthesis. At sites with an annual precipitation above 1900 mm and a dry season length less than 4 months, evaporation rates increased in the dry season, coincident with increased radiation. In contrast, ecosystems with precipitation less than 1700 mm and a longer dry season showed clear evidence of reduced evaporation in the dry season coming from water stress. In all these sites, the seasonal variation of the effective cloud albedo is a major factor in determining the surface available energy. Dry season fires add substantial aerosol to the atmosphere. Aerosol scattering and absorption both reduce the total downward surface radiative flux, but increase the diffuse/direct flux ratio, which increases photosynthetic efficiency. Convective plumes produced by fires enhance the vertical transport of aerosols over the Amazon, and effectively inject smoke aerosol and gases directly into the middle troposphere with substantial impacts on mid- tropospheric dispersion. In the rainy season in Rondônia, convection in low-level westerly flows with low aerosol content resembles oceanic convection with

  18. Correlated Edge Overlaps in Multiplex Networks

    CERN Document Server

    Baxter, Gareth J; da Costa, Rui A; Dorogovtsev, Sergey N; Mendes, José F F

    2016-01-01

    We develop the theory of sparse multiplex networks with partially overlapping links based on their local tree-likeness. This theory enables us to find the giant mutually connected component in a two-layer multiplex network with arbitrary correlations between connections of different types. We find that correlations between the overlapping and non-overlapping links markedly change the phase diagram of the system, leading to multiple hybrid phase transitions. For assortative correlations we observe recurrent hybrid phase transitions.

  19. Surface water data at Los Alamos National Laboratory: 1995 water year. Progress report

    Energy Technology Data Exchange (ETDEWEB)

    Barks, R. [ed.; Shaull, D.A.; Alexander, M.R.; Reynolds, R.P.

    1996-08-01

    The principle investigators collected and computed surface water discharge data from 15 stream-gaging stations that cover most of Los Alamos National Laboratory. The United States Department of Interior Geological Survey, Water Resources Division, operates two of the stations under a subcontract; these are identified in the station manuscripts. Included in this report are data from one seepage run conducted in Los Alamos Canyon during the 1995 water year.

  20. Progress in Projecting Solar Radiation at the Earth's Surface in Climate Models

    Science.gov (United States)

    Collins, W.; Fildier, B.; Feldman, D.

    2015-12-01

    Projecting changes in solar radiation at the Earth's surface in futureclimates is a critical input to forecast surface irradiance for solarenergy. We demonstrate the current state of the art using theensemble of opportunity assembled for the Coupled ModelIntercomparison Project (CMIP5) and the Fifth Assessment Report (AR5)of the Intergovernmental Panel on Climate Change (IPCC). The reliability of these projections depends upon the accuracy of theunderlying radiation codes, the fidelity of these codes to themeasured optical properties of key radiatively active atmosphericconstituents, and the realism of future projections of theseatmospheric constituents. These constituents include aerosols,clouds, water vapor, greenhouse gases that absorb near-infraredsunlight. Since the realism of future projections of anthropogenicaerosol species is contingent on the underlying scenario, we focus onthe other challenges in forecasting surface irradiance. Regarding accuracy, we demonstrate that current GCM shortwaveparameterizations often exhibit quite small errors relative tobenchmark radiative transfer codes. In addition, recent work hasbracketed the uncertainties in solar irradiance associated withcomplex cloud geometries. There is also an emerging consensus howcloud radiative effects will evolve in a warmer climate. However,there is evidence that current GCM codes still exhibit systematicerrors in the near-infrared water vapor bands, particularly for moistsub-tropical atmospheres. These errors will become more acute aswater vapor feedbacks, combined with global warming, increase thetotal precipitable water in the Earth's atmosphere.

  1. Finding overlapping communities using seed set

    Science.gov (United States)

    Yang, Jin-Xuan; Zhang, Xiao-Dong

    2017-02-01

    The local optimization algorithm using seed set to find overlapping communities has become more and more a significant method, but it is a great challenge how to choose a good seed set. In this paper, a new method is proposed to achieve the choice of candidate seed sets, and yields a new algorithm to find overlapping communities in complex networks. By testing in real world networks and synthetic networks, this method can successfully detect overlapping communities and outperform other state-of-the-art overlapping community detection methods.

  2. Application of Wavelet Entropy to Predict Atrial Fibrillation Progression from the Surface ECG

    Directory of Open Access Journals (Sweden)

    Raúl Alcaraz

    2012-01-01

    Full Text Available Atrial fibrillation (AF is the most common supraventricular arrhythmia in clinical practice, thus, being the subject of intensive research both in medicine and engineering. Wavelet Entropy (WE is a measure of the disorder degree of a specific phenomena in both time and frequency domains, allowing to reveal underlying dynamical processes out of sight for other methods. The present work introduces two different WE applications to the electrocardiogram (ECG of patients in AF. The first application predicts the spontaneous termination of paroxysmal AF (PAF, whereas the second one deals with the electrical cardioversion (ECV outcome in persistent AF patients. In both applications, WE was used with the objective of assessing the atrial fibrillatory (f waves organization. Structural changes into the f waves reflect the atrial activity organization variation, and this fact can be used to predict AF progression. To this respect, results in the prediction of PAF termination regarding sensitivity, specificity, and accuracy were 95.38%, 91.67%, and 93.60%, respectively. On the other hand, for ECV outcome prediction, 85.24% sensitivity, 81.82% specificity, and 84.05% accuracy were obtained. These results turn WE as the highest single predictor of spontaneous PAF termination and ECV outcome, thus being a promising tool to characterize non-invasive AF signals.

  3. Utilisation d'une onde progressive de surface pour tableau graphique de grandes dimensions

    OpenAIRE

    Bigot, S.; Kamarei, M.; Bouthinon, M.

    1988-01-01

    Le développement de la conception assistée et de la communication par ordinateur exige un nouveau type de tablettes graphiques dont les améliorations sont l'augmentation des dimensions tout en conservant une bonne précision et l'obtention d'un crayon libre de toute attache physique avec la tablette. La solution adoptée repose sur le principe de fonctionnement suivant : une onde de surface émise par le crayon pointeur se propage omnidirectionnellement dans le plan de la tablette. Trois récepte...

  4. Overlapping Community Detection by Online Cluster Aggregation

    CERN Document Server

    Kozdoba, Mark

    2015-01-01

    We present a new online algorithm for detecting overlapping communities. The main ingredients are a modification of an online k-means algorithm and a new approach to modelling overlap in communities. An evaluation on large benchmark graphs shows that the quality of discovered communities compares favorably to several methods in the recent literature, while the running time is significantly improved.

  5. DIMENSIONS OF SELF-AFFINESETS WITH OVERLAPS

    Institute of Scientific and Technical Information of China (English)

    华苏

    2003-01-01

    The authors develop an algorithm to show that a class of self-affine sets with overlaps canbe viewed as sofic affine-invariant sets without overlaps, thus by using the results of [11] and[10], the Hausdorff and Minkowski dimensions are determined.

  6. Constructing Potential Energy Surfaces for Polyatomic Systems: Recent Progress and New Problems

    Directory of Open Access Journals (Sweden)

    J. Espinosa-Garcia

    2012-01-01

    Full Text Available Different methods of constructing potential energy surfaces in polyatomic systems are reviewed, with the emphasis put on fitting, interpolation, and analytical (defined by functional forms approaches, based on quantum chemistry electronic structure calculations. The different approaches are reviewed first, followed by a comparison using the benchmark H + CH4 and the H + NH3 gas-phase hydrogen abstraction reactions. Different kinetics and dynamics properties are analyzed for these reactions and compared with the available experimental data, which permits one to estimate the advantages and disadvantages of each method. Finally, we analyze different problems with increasing difficulty in the potential energy construction: spin-orbit coupling, molecular size, and more complicated reactions with several maxima and minima, which test the soundness and general applicability of each method. We conclude that, although the field of small systems, typically atom-diatom, is mature, there still remains much work to be done in the field of polyatomic systems.

  7. Bayesian Overlapping Community Detection in Dynamic Networks

    CERN Document Server

    Ghorbani, Mahsa; Khodadadi, Ali

    2016-01-01

    Detecting community structures in social networks has gained considerable attention in recent years. However, lack of prior knowledge about the number of communities, and their overlapping nature have made community detection a challenging problem. Moreover, many of the existing methods only consider static networks, while most of real world networks are dynamic and evolve over time. Hence, finding consistent overlapping communities in dynamic networks without any prior knowledge about the number of communities is still an interesting open research problem. In this paper, we present an overlapping community detection method for dynamic networks called Dynamic Bayesian Overlapping Community Detector (DBOCD). DBOCD assumes that in every snapshot of network, overlapping parts of communities are dense areas and utilizes link communities instead of common node communities. Using Recurrent Chinese Restaurant Process and community structure of the network in the last snapshot, DBOCD simultaneously extracts the numbe...

  8. Neural overlap in processing music and speech.

    Science.gov (United States)

    Peretz, Isabelle; Vuvan, Dominique; Lagrois, Marie-Élaine; Armony, Jorge L

    2015-03-19

    Neural overlap in processing music and speech, as measured by the co-activation of brain regions in neuroimaging studies, may suggest that parts of the neural circuitries established for language may have been recycled during evolution for musicality, or vice versa that musicality served as a springboard for language emergence. Such a perspective has important implications for several topics of general interest besides evolutionary origins. For instance, neural overlap is an important premise for the possibility of music training to influence language acquisition and literacy. However, neural overlap in processing music and speech does not entail sharing neural circuitries. Neural separability between music and speech may occur in overlapping brain regions. In this paper, we review the evidence and outline the issues faced in interpreting such neural data, and argue that converging evidence from several methodologies is needed before neural overlap is taken as evidence of sharing.

  9. Neural overlap in processing music and speech

    Science.gov (United States)

    Peretz, Isabelle; Vuvan, Dominique; Lagrois, Marie-Élaine; Armony, Jorge L.

    2015-01-01

    Neural overlap in processing music and speech, as measured by the co-activation of brain regions in neuroimaging studies, may suggest that parts of the neural circuitries established for language may have been recycled during evolution for musicality, or vice versa that musicality served as a springboard for language emergence. Such a perspective has important implications for several topics of general interest besides evolutionary origins. For instance, neural overlap is an important premise for the possibility of music training to influence language acquisition and literacy. However, neural overlap in processing music and speech does not entail sharing neural circuitries. Neural separability between music and speech may occur in overlapping brain regions. In this paper, we review the evidence and outline the issues faced in interpreting such neural data, and argue that converging evidence from several methodologies is needed before neural overlap is taken as evidence of sharing. PMID:25646513

  10. From near-infrared and Raman to surface-enhanced Raman spectroscopy: progress, limitations and perspectives in bioanalysis.

    Science.gov (United States)

    Dumont, Elodie; De Bleye, Charlotte; Sacré, Pierre-Yves; Netchacovitch, Lauranne; Hubert, Philippe; Ziemons, Eric

    2016-05-01

    Over recent decades, spreading environmental concern entailed the expansion of green chemistry analytical tools. Vibrational spectroscopy, belonging to this class of analytical tool, is particularly interesting taking into account its numerous advantages such as fast data acquisition and no sample preparation. In this context, near-infrared, Raman and mainly surface-enhanced Raman spectroscopy (SERS) have thus gained interest in many fields including bioanalysis. The two former techniques only ensure the analysis of concentrated compounds in simple matrices, whereas the emergence of SERS improved the performances of vibrational spectroscopy to very sensitive and selective analyses. Complex SERS substrates were also developed enabling biomarker measurements, paving the way for SERS immunoassays. Therefore, in this paper, the strengths and weaknesses of these techniques will be highlighted with a focus on recent progress.

  11. Liquid--liquid surface impaction. Annual progress report, July 1, 1975--June 30, 1976

    Energy Technology Data Exchange (ETDEWEB)

    Bankoff, S.G.

    1976-01-01

    The critical Weber number for coalescence, when a droplet of Freon-22 or pentane falls on a pool of hot (80-180/sup 0/C) silicone oil or glycerine, has been determined as a function of pool temperature and droplet size. Using this information, a splash theory for local propagation of a vapor explosion has been formulated, which agrees with intermediate-scale peak pressure data of Henry, et al. A hydrodynamic theory has been constructed for the minimum thickness of the gas film in the approach phase. The Board-Hall theory for fuel-coolant detonation waves has been modified to take into account the presence of a swarm of drops, rather than a single drop. On this basis the existence of a steady-state Chapman-Jouguet wave in either the tin-water or UO/sub 2/-sodium systems seems highly unlikely. Scoping experiments on Leidenfrost boiling of droplets and pool boiling from liquid metal surfaces have been initiated.

  12. Progress in the synthesis and characterization of magnetite nanoparticles with amino groups on the surface

    Energy Technology Data Exchange (ETDEWEB)

    Durdureanu-Angheluta, A.; Dascalu, A.; Fifere, A.; Coroaba, A.; Pricop, L. [Centre of Advanced Research in Bionanoconjugates and Biopolymers, ' ' Petru Poni' ' Institute of Macromolecular Chemistry of Romanian Academy, 41A Aleea Grigore Ghica Voda, 700487 Iasi (Romania); Chiriac, H. [National Institute of Research and Development in Technical Physics, 700050 Iasi (Romania); Tura, V. [Faculty of Physics, ' ' Al. I. Cuza' ' University, B-dul Carol I, no. 11, 700506 Iasi (Romania); Pinteala, M., E-mail: pinteala@icmpp.ro [Centre of Advanced Research in Bionanoconjugates and Biopolymers, ' ' Petru Poni' ' Institute of Macromolecular Chemistry of Romanian Academy, 41A Aleea Grigore Ghica Voda, 700487 Iasi (Romania); Simionescu, B.C. [Centre of Advanced Research in Bionanoconjugates and Biopolymers, ' ' Petru Poni' ' Institute of Macromolecular Chemistry of Romanian Academy, 41A Aleea Grigore Ghica Voda, 700487 Iasi (Romania); Department of Natural and Synthetic Polymers, ' ' Gh. Asachi' ' Technical University of Iasi, 73 Mangeron Blvd, 700050 Iasi (Romania)

    2012-05-15

    This manuscript deals with the synthesis of new hydrophilic magnetite particles by employing a two-step method: in the first step magnetite particles with hydrophobic shell formed in presence of oleic acid-oleylamine complex through a synthesis in mass, without solvent, in a mortar with pestle were obtained; while in the second step the hydrophobic shell was interchanged with an aminosilane monomer. The influence of the Fe{sup 2+}/Fe{sup 3+} molar ratio on the dimension of the particles of high importance for their potential applications was carefully investigated. This paper, also presents an alternative method of synthesis of new core-shell magnetite particles and the complete study of their structure and morphology by FT-IR, XPS, TGA, ESEM and TEM techniques. The rheological properties and magnetization analysis of high importance for magnetic particles were also investigated. - Highlights: Black-Right-Pointing-Pointer Magnetite particles are superparamagnetic materials. Black-Right-Pointing-Pointer Magnetite has significant role in nanotechnology due to surface properties and applicability in physical and chemical processes. Black-Right-Pointing-Pointer We used an ecological method of synthesis, a reaction in mass, without solvent, in a mortar with pestle. Black-Right-Pointing-Pointer We prepared hydrophilic magnetite particles, precursors for biomedical applications.

  13. Numerical Study of Submerged Vertical Plane Jets Under Progressive Water Surface Waves

    Institute of Scientific and Technical Information of China (English)

    DAI Hui-chao; WANG Ling-ling

    2005-01-01

    When wastewater is discharged into a coastal area through an outfall system, it will always be subjected to the action of waves. It is important to study and quantify the mixing of the discharge with the ambient water so that accurate environmental impact assessment can be made for such discharge conditions. The present work aims to study the phenomenon of a plane jet discharged into water environment with regular waves. A 3D numerical model based on the full Navier-Stokes equations (NSE) in the σ-coordinate is developed to study the present problem. Turbulence effects are modeled by a subgrid-scale (SGS) model using the concept of large eddy simulation (LES). The operator splitting method is used to solve the modified NSE. The model has been applied to the simulation of three different cases of submerged plane jets with surface waves: jet with strong waves, jet with weak waves and jet without waves. Numerical results show that the waves enhance the mixing of the jet with the ambient fluid, and cause a periodic deflection of the jet. The size of the re-circulation is about 1.5~2.4 depth of water. The velocity profile of the jet is self-similar in the zone of established flow for both the pure jet and jet in wave circumstances. The spreading characteristic constant α is 0.100 and 0.105 for pure momentum jets with Re numbers 1025 and 2050. The value of α increases from 0.130 to 0.147 for a jet in weak and strong wave circumstances, showing that waves have an obvious effect on the mixing and dilution properties of jets. Numerical results are in good agreement with the experimental data for the cases of pure jets and jets with waves.

  14. Recent progress in design, synthesis, and applications of one-dimensional TiO2 nanostructured surface heterostructures: a review.

    Science.gov (United States)

    Tian, Jian; Zhao, Zhenhuan; Kumar, Anil; Boughton, Robert I; Liu, Hong

    2014-01-01

    One-dimensional TiO2 nanostructured surface heterostructures (1D TiO2NSHs) have been comprehensively studied during the past two decades because of the possible practical applications in various fields, including photocatalysis, dye-sensitized solar cells, sensors, lithium batteries, biomedicine, catalysis, and supercapacitors. Combining extensive advancements in materials science and nanotechnology, a 1D TiO2NSH material with well-controlled size, morphology, and composition has been designed and synthesized. More importantly, its superior properties, including a high aspect ratio structure, chemical stability, large specific surface area, excellent electronic or ionic charge transfer, and a specific interface effect, have attracted a great deal of interest in improving current performance and exploring new applications. In this tutorial review, we introduce the characteristics of 1D TiO2 nanostructures, the design principles for the fabrication of 1D TiO2NSHs, and we also summarize the recent progress in developing synthesis methods and applications of 1D TiO2NSHs in different fields. The relationship between the secondary phase and the 1D TiO2 nanostructure and between the performance in applications and the excellent physical properties of 1D TiO2NSHs are also discussed.

  15. Generation of stable overlaps between antiparallel filaments

    CERN Document Server

    Johann, D; Kruse, K

    2015-01-01

    During cell division, sister chromatids are segregated by the mitotic spindle, a bipolar assembly of interdigitating antiparallel polar filaments called microtubules. Establishing a stable overlap region is essential for maintenance of bipolarity, but the underlying mechanisms are poorly understood. Using a particle-based stochastic model, we find that the interplay of motors and passive cross linkers can robustly generate partial overlaps between antiparallel filaments. Our analysis shows that motors reduce the overlap in a length-dependent manner, whereas passive cross linkers increase it independently of the length. In addition to maintaining structural integrity, passive cross linkers can thus also have a dynamic role for size regulation.

  16. Overlap maximum matching ratio (OMMR):a new measure to evaluate overlaps of essential modules

    Institute of Scientific and Technical Information of China (English)

    Xiao-xia ZHANG; Qiang-hua XIAO; Bin LI; Sai HU; Hui-jun XIONG; Bi-hai ZHAO

    2015-01-01

    Protein complexes are the basic units of macro-molecular organizations and help us to understand the cell’s mechanism. The development of the yeast two-hybrid, tandem affinity purification, and mass spectrometry high-throughput proteomic techniques supplies a large amount of protein-protein interaction data, which make it possible to predict overlapping complexes through computational methods. Research shows that overlapping complexes can contribute to identifying essential proteins, which are necessary for the organism to survive and reproduce, and for life’s activities. Scholars pay more attention to the evaluation of protein complexes. However, few of them focus on predicted overlaps. In this paper, an evaluation criterion called overlap maximum matching ratio (OMMR) is proposed to analyze the similarity between the identified overlaps and the benchmark overlap modules. Comparison of essential proteins and gene ontology (GO) analysis are also used to assess the quality of overlaps. We perform a comprehensive comparison of serveral overlapping complexes prediction approaches, using three yeast protein-protein interaction (PPI) networks. We focus on the analysis of overlaps identified by these algorithms. Experimental results indicate the important of overlaps and reveal the relationship between overlaps and identification of essential proteins.

  17. Motor protein accumulation on antiparallel microtubule overlaps

    CERN Document Server

    Kuan, Hui-Shun

    2015-01-01

    Biopolymers serve as one-dimensional tracks on which motor proteins move to perform their biological roles. Motor protein phenomena have inspired theoretical models of one-dimensional transport, crowding, and jamming. Experiments studying the motion of Xklp1 motors on reconstituted antiparallel microtubule overlaps demonstrated that motors recruited to the overlap walk toward the plus end of individual microtubules and frequently switch between filaments. We study a model of this system that couples the totally asymmetric simple exclusion process (TASEP) for motor motion with switches between antiparallel filaments and binding kinetics. We determine steady-state motor density profiles for fixed-length overlaps using exact and approximate solutions of the continuum differential equations and compare to kinetic Monte Carlo simulations. The center region, far from the overlap ends, has a constant motor density as one would na\\"ively expect. However, rather than following a simple binding equilibrium, the center ...

  18. Detecting overlapping coding sequences in virus genomes

    Directory of Open Access Journals (Sweden)

    Brown Chris M

    2006-02-01

    Full Text Available Abstract Background Detecting new coding sequences (CDSs in viral genomes can be difficult for several reasons. The typically compact genomes often contain a number of overlapping coding and non-coding functional elements, which can result in unusual patterns of codon usage; conservation between related sequences can be difficult to interpret – especially within overlapping genes; and viruses often employ non-canonical translational mechanisms – e.g. frameshifting, stop codon read-through, leaky-scanning and internal ribosome entry sites – which can conceal potentially coding open reading frames (ORFs. Results In a previous paper we introduced a new statistic – MLOGD (Maximum Likelihood Overlapping Gene Detector – for detecting and analysing overlapping CDSs. Here we present (a an improved MLOGD statistic, (b a greatly extended suite of software using MLOGD, (c a database of results for 640 virus sequence alignments, and (d a web-interface to the software and database. Tests show that, from an alignment with just 20 mutations, MLOGD can discriminate non-overlapping CDSs from non-coding ORFs with a typical accuracy of up to 98%, and can detect CDSs overlapping known CDSs with a typical accuracy of 90%. In addition, the software produces a variety of statistics and graphics, useful for analysing an input multiple sequence alignment. Conclusion MLOGD is an easy-to-use tool for virus genome annotation, detecting new CDSs – in particular overlapping or short CDSs – and for analysing overlapping CDSs following frameshift sites. The software, web-server, database and supplementary material are available at http://guinevere.otago.ac.nz/mlogd.html.

  19. Numerical properties of staggered overlap fermions

    CERN Document Server

    de Forcrand, Philippe; Panero, Marco

    2010-01-01

    We report the results of a numerical study of staggered overlap fermions, following the construction of Adams which reduces the number of tastes from 4 to 2 without fine-tuning. We study the sensitivity of the operator to the topology of the gauge field, its locality and its robustness to fluctuations of the gauge field. We make a first estimate of the computing cost of a quark propagator calculation, and compare with Neuberger's overlap.

  20. Asthma, chronic obstructive pulmonary disease (COPD), and the overlap syndrome.

    Science.gov (United States)

    Nakawah, Mohammad Obadah; Hawkins, Clare; Barbandi, Farouk

    2013-01-01

    Asthma and chronic obstructive pulmonary disease (COPD) are highly prevalent chronic diseases in the general population. Both are characterized by heterogeneous chronic airway inflammation and airway obstruction. In both conditions, chronic inflammation affects the whole respiratory tract, from central to peripheral airways, with different inflammatory cells recruited, different mediators produced, and thus differing responses to therapy. Airway obstruction is typically intermittent and reversible in asthma but is progressive and largely irreversible in COPD. However, there is a considerable pathologic and functional overlap between these 2 heterogeneous disorders, particularly among the elderly, who may have components of both diseases (asthma-COPD overlap syndrome). The definitions for asthma and COPD recommended by current guidelines are useful but limited because they do not illustrate the full spectrum of obstructive airway diseases that is encountered in clinical practice. Defining asthma and COPD as separate entities neglects a considerable proportion of patients with overlapping features and is largely based on expert opinion rather than on the best current evidence. The presence of different phenotypes or components of obstructive airway diseases, therefore, needs to be addressed to individualize and optimize treatment to achieve the best effect with the fewest side effects for the patient. Although specific interventions vary by disease, the treatment goals of obstructive airway diseases are similar and driven primarily by the need to control symptoms, optimize health status, and prevent exacerbations.

  1. Impact of biannual treatment with fluoride varnish on tooth-surface-level caries progression in children aged 1-3 years.

    Science.gov (United States)

    Anderson, Maria; Dahllöf, Göran; Soares, Fernanda Cunha; Grindefjord, Margaret

    2017-10-01

    This study describes caries progression at tooth-surface level in children from 1 to 3 years of age and the impact of biannual treatment with fluoride varnish. Children who participated in a cluster-randomized controlled trial and had shown signs of dental caries were included in this study (n=801). International Caries Detection and Assessment System (ICDAS) was used to classify dental caries. The present study compared children receiving a standard yearly intervention to children receiving the same standard preventive intervention supplemented with an application of fluoride varnish every half year. The maxillary incisors were the first teeth to develop cavitation (ICDAS 3-6) and also mostly affected. Further analyses focusing on maxillary incisors buccal surfaces showed that sound surfaces had least progression and that progression to extensive decay was more common in teeth that had exhibited moderate decay. A summarizing progression index (PI) was calculated for the buccal surfaces of the maxillary incisors. Between 1 and 2 years of age PI was 26% and between 2 and 3 years of age PI was 21%. The progression on buccal incisors and on occlusal first primary molars did not differ between intervention groups (p≤0,05). No impact on caries progression for biannual treatment with fluoride varnish was found. Using fluoride varnish as a complement to standard intervention in toddlers did not add in the prevention of dental caries or its progression. The education of parents in the use fluoride toothpaste as they start brushing the teeth of their children is essential. Copyright © 2017 Elsevier Ltd. All rights reserved.

  2. Temporal Proximity Promotes Integration of Overlapping Events.

    Science.gov (United States)

    Zeithamova, Dagmar; Preston, Alison R

    2017-03-02

    Events with overlapping elements can be encoded as two separate representations or linked into an integrated representation; yet, we know little about the conditions that promote one form of representation over the other. Here, we tested the hypothesis that the proximity of overlapping events would increase the probability of integration. Participants first established memories for house-object and face-object pairs; half of the pairs were learned 24 hr before a fMRI session, and the other half 30 min before the session. During scanning, participants encoded object-object pairs that overlapped with the initial pairs acquired on the same or prior day. Participants were also scanned as they made inference judgments about the relationships among overlapping pairs learned on the same or different day. Participants were more accurate and faster when inferring relationships among memories learned on the same day relative to those acquired across days, suggesting that temporal proximity promotes integration. Evidence for reactivation of existing memories-as measured by a visual content classifier-was equivalent during encoding of overlapping pairs from the two temporal conditions. In contrast, evidence for integration-as measured by a mnemonic strategy classifier from an independent study [Richter, F. R., Chanales, A. J. H., & Kuhl, B. A. Predicting the integration of overlapping memories by decoding mnemonic processing states during learning. Neuroimage, 124, 323-335, 2016]-was greater for same-day overlapping events, paralleling the behavioral results. During inference itself, activation patterns further differentiated when participants were making inferences about events acquired on the same day versus across days. These findings indicate that temporal proximity of events promotes integration and further influences the neural mechanisms engaged during inference.

  3. Wavelet fractal character of overlapping signal

    Institute of Scientific and Technical Information of China (English)

    2003-01-01

    A new method based on the combining of the wavelet theory with the fractal theory and named wavelet fractal peak position method (WFPPM) is introduced to extract the number of the components and the relevant peak positions from overlapping signals in chemistry. The overlapping signal is first transformed into continuous wavelet transform value of time domain in certain dilation range via continuous wavelet transform (CWT), and then changed into capacity dimensions (Dc). The number of the components and the relevant positions of overlapping peaks can be identified easily according to the change of Dc. An investigation concerning the influence of different dilation ranges on the peak positions extracted by WFPPM is also provided. Studies show that WFPPM is and efficient tool for extracting the peak positions and identifying the number of peaks from unresolved signals, even wht\\en this kind of overlapping is significantly serious. Relative errors of less than 1.0% in peak are found when WFPPM is used in the processing of the cadmium(Ⅱ)-indium(Ⅲ) mixture system. The analytical results demonstrate that the desired peak positions can be extracted conveniently, accurately and rapidly from and unresolved signal via WFPPM. Tremendous developing and applications based on currently reported WFPPM in extracting overlapping signals would be expected in the near futrue.

  4. A Social Network Model Exhibiting Tunable Overlapping Community Structure

    NARCIS (Netherlands)

    Liu, D.; Blenn, N.; Van Mieghem, P.F.A.

    2012-01-01

    Social networks, as well as many other real-world networks, exhibit overlapping community structure. In this paper, we present formulas which facilitate the computation for characterizing the overlapping community structure of networks. A hypergraph representation of networks with overlapping

  5. The QCD vacuum probed by overlap fermions

    CERN Document Server

    Weinberg, V; Koller, K; Koma, Y; Schierholz, G; Streuer, T

    2006-01-01

    We summarize different uses of the eigenmodes of the Neuberger overlap operator for the analysis of the QCD vacuum, here applied to quenched configurations simulated by means of the Luescher-Weisz action. We describe the localization and chiral properties of the lowest modes. The overlap-based topological charge density (with and without UV-filtering) is compared with the results of UV-filtering for the field strength tensor. The latter allows to identify domains of good (anti-)selfduality. All these techniques together lead to a dual picture of the vacuum, unifying the infrared instanton picture with the presence of singular defects co-existent at different scales.

  6. Schwinger model simulations with dynamical overlap fermions

    CERN Document Server

    Bietenholz, W; Volkholz, J

    2007-01-01

    We present simulation results for the 2-flavour Schwinger model with dynamical overlap fermions. In particular we apply the overlap hypercube operator at seven light fermion masses. In each case we collect sizable statistics in the topological sectors 0 and 1. Since the chiral condensate Sigma vanishes in the chiral limit, we observe densities for the microscopic Dirac spectrum, which have not been addressed yet by Random Matrix Theory (RMT). Nevertheless, by confronting the averages of the lowest eigenvalues in different topological sectors with chiral RMT in unitary ensemble we obtain -- for the very light fermion masses -- values for $\\Sigma$ that follow closely the analytical predictions in the continuum.

  7. Schwinger model simulations with dynamical overlap fermions

    Energy Technology Data Exchange (ETDEWEB)

    Bietenholz, W. [Deutsches Elektronen-Synchrotron (DESY), Zeuthen (Germany). John von Neumann-Inst. fuer Computing NIC; Shcheredin, S. [Bielefeld Univ. (Germany). Fakultaet fuer Physik; Volkholz, J. [Humboldt-Universitaet, Berlin (Germany). Inst. fuer Physik

    2007-11-15

    We present simulation results for the 2-flavour Schwinger model with dynamical overlap fermions. In particular we apply the overlap hypercube operator at seven light fermion masses. In each case we collect sizable statistics in the topological sectors 0 and 1. Since the chiral condensate {sigma} vanishes in the chiral limit, we observe densities for the microscopic Dirac spectrum, which have not been addressed yet by Random Matrix Theory (RMT). Nevertheless, by confronting the averages of the lowest eigenvalues in different topological sectors with chiral RMT in unitary ensemble we obtain - for the very light fermion masses - values for {sigma} that follow closely the analytical predictions in the continuum. (orig.)

  8. On the SOR method with overlapping subsystems

    Science.gov (United States)

    Maleev, A. A.

    2006-06-01

    A description is given of the iterative Jacobi method with overlapping subsystems and the corresponding Gauss-Seidel method. Similarly to the classical case, a generalized SOR method with overlapping subsystems is constructed by introducing an relaxation parameter. The concept of a ω-consistent matrix is defined. It is shown that, with the optimal choice of the parameter, the theory developed by Young remains valid for ω-consistent matrices. This implies certain results for ω-consistent H-matrices. The theoretical conclusions obtained in the paper are supported by numerical results.

  9. Overlapping community detection using weighted consensus clustering

    Indian Academy of Sciences (India)

    LINTAO YANG; ZETAI YU; JING QIAN; SHOUYIN LIU

    2016-10-01

    Many overlapping community detection algorithms have been proposed. Most of them are unstable and behave non-deterministically. In this paper, we use weighted consensus clustering for combining multiple base covers obtained by classic non-deterministic algorithms to improve the quality of the results. We first evaluate a reliability measure for each community in all base covers and assign a proportional weight to each one. Then we redefine the consensus matrix that takes into account not only the common membership of nodes, but also the reliability of the communities. Experimental results on both artificial and real-world networks show that our algorithm can find overlapping communities accurately.

  10. Asthma-chronic obstructive pulmonary disease overlap syndrome (ACOS): current literature review

    Science.gov (United States)

    Papaiwannou, Antonis; Porpodis, Konstantinos; Spyratos, Dionysios; Kioumis, Ioannis; Pitsiou, Georgia; Pataka, Athanasia; Tsakiridis, Kosmas; Arikas, Stamatis; Mpakas, Andreas; Tsiouda, Theodora; Katsikogiannis, Nikolaos; Kougioumtzi, Ioanna; Machairiotis, Nikolaos; Siminelakis, Stavros; Kolettas, Alexander; Kessis, George; Beleveslis, Thomas; Zarogoulidis, Konstantinos

    2014-01-01

    Asthma and chronic obstructive pulmonary disease (COPD) are chronic diseases, very common in general population. These obstructive airway illnesses are manifested with chronic inflammation affecting the whole respiratory tract. Obstruction is usually intermittent and reversible in asthma, but is progressive and irreversible in COPD. Asthma and COPD may overlap and converge, especially in older people [overlap syndrome—asthma-chronic obstructive pulmonary disease overlap syndrome (ACOS)]. Although ACOS accounts approximately 15-25% of the obstructive airway diseases, is not well recognised because of the structure of clinical trials. COPD studies exclude asthma patients and asthma studies exclude COPD patients, respectively. It is crucial to define asthma, COPD and overlap syndrome (ACOS), as notable clinical entities, which they share common pathologic and functional features, but they are characterized from differences in lung function, acute exacerbations, quality of life, hospital impact and mortality. PMID:24672688

  11. Progress on system for applying simultaneous heat and brachytherapy to large-area surface disease (Invited Paper)

    Science.gov (United States)

    Stauffer, Paul R.; Schlorff, Jaime L.; Juang, Titania; Neuman, Daniel G., Jr.; Johnson, Jessi E.; Maccarini, Paolo F.; Pouliot, Jean

    2005-04-01

    Laboratory experiments have shown that thermal enhancement of radiation response increases substantially for higher thermal dose (approaching 100 CEM43) and when hyperthermia and radiation are delivered simultaneously. Unfortunately, equipment capable of delivering uniform doses of heat and radiation simultaneously has not been available to test the clinical potential of this approach. We present recent progress on the clinical implementation of a system that combines the uniform heating capabilities of flexible printed circuit board microwave array applicators with an array of brachytherapy catheters held a fixed distance from the skin for uniform radiation of tissue deep with a scanning high dose rate (HDR) brachytherapy source. The system is based on the Combination Applicator which consists of an array of up to 32 Dual Concentric Conductor (DCC) apertures driven at 915 MHz for heating tissue, coupled with an array of 1 cm spaced catheters for HDR therapy. Efforts to optimize the clinical interface and move from rectangular to more complex shape applicators that accommodate the entire disease in a larger number of patients are described. Improvements to the system for powering and controlling the applicator are also described. Radiation dosimetry and experimental performance results of a prototype 15 x 15 cm dual-purpose applicator demonstrate dose distributions with good homogeneity under large contoured surfaces typical of diffuse chestwall recurrence of breast carcinoma. Investigations of potential interaction between heat and brachytherapy components of a Combination Applicator demonstrate no perceptible perturbation of the heating field from an HDR source or leadwire, no perceptible effect of a scanning HDR source on fiberoptic thermometry, and heat and radiation simultaneously for maximum synergism of modalities, this dual therapy system should expand the number of patients that can benefit from effective thermoradiotherapy treatments.

  12. Improving Inversions of the Overlap Operator

    Energy Technology Data Exchange (ETDEWEB)

    Krieg, S. [Department of Physics, Universitaet Wuppertal, Gaussstrasse 19, Wuppertal (Germany); Cundy, N. [Department of Physics, Universitaet Wuppertal, Gaussstrasse 19, Wuppertal (Germany); Eshof, J. van den [Department of Mathematics, University of Duesseldorf (Germany); Frommer, A. [Department of Mathematics, Univeritaet Wuppertal (Germany); Lippert, Th. [John von Neumann Institute for Computing, Juelich Research Centre, 52425 Juelich (Germany); Schaefer, K. [Department of Mathematics, Univeritaet Wuppertal (Germany)

    2005-03-15

    We present relaxation and preconditioning techniques which accelerate the inversion of the overlap operator by a factor of four on small lattices, with larger gains as the lattice size increases. These improvements can be used in both propagator calculations and dynamical simulations.

  13. Parallelizing SLPA for Scalable Overlapping Community Detection

    Directory of Open Access Journals (Sweden)

    Konstantin Kuzmin

    2015-01-01

    Full Text Available Communities in networks are groups of nodes whose connections to the nodes in a community are stronger than with the nodes in the rest of the network. Quite often nodes participate in multiple communities; that is, communities can overlap. In this paper, we first analyze what other researchers have done to utilize high performance computing to perform efficient community detection in social, biological, and other networks. We note that detection of overlapping communities is more computationally intensive than disjoint community detection, and the former presents new challenges that algorithm designers have to face. Moreover, the efficiency of many existing algorithms grows superlinearly with the network size making them unsuitable to process large datasets. We use the Speaker-Listener Label Propagation Algorithm (SLPA as the basis for our parallel overlapping community detection implementation. SLPA provides near linear time overlapping community detection and is well suited for parallelization. We explore the benefits of a multithreaded programming paradigm and show that it yields a significant performance gain over sequential execution while preserving the high quality of community detection. The algorithm was tested on four real-world datasets with up to 5.5 million nodes and 170 million edges. In order to assess the quality of community detection, at least 4 different metrics were used for each of the datasets.

  14. Overlapping Community Detection based on Network Decomposition

    Science.gov (United States)

    Ding, Zhuanlian; Zhang, Xingyi; Sun, Dengdi; Luo, Bin

    2016-04-01

    Community detection in complex network has become a vital step to understand the structure and dynamics of networks in various fields. However, traditional node clustering and relatively new proposed link clustering methods have inherent drawbacks to discover overlapping communities. Node clustering is inadequate to capture the pervasive overlaps, while link clustering is often criticized due to the high computational cost and ambiguous definition of communities. So, overlapping community detection is still a formidable challenge. In this work, we propose a new overlapping community detection algorithm based on network decomposition, called NDOCD. Specifically, NDOCD iteratively splits the network by removing all links in derived link communities, which are identified by utilizing node clustering technique. The network decomposition contributes to reducing the computation time and noise link elimination conduces to improving the quality of obtained communities. Besides, we employ node clustering technique rather than link similarity measure to discover link communities, thus NDOCD avoids an ambiguous definition of community and becomes less time-consuming. We test our approach on both synthetic and real-world networks. Results demonstrate the superior performance of our approach both in computation time and accuracy compared to state-of-the-art algorithms.

  15. Current status of Dynamical Overlap project

    CERN Document Server

    Cundy, N

    2006-01-01

    We discuss the adaptation of the Hybrid Monte Carlo algorithm to overlap fermions. We derive a method which can be used to account for the delta function in the fermionic force caused by the differential of the sign function. We discuss the algoritmic difficulties that have been overcome, and mention those that still need to be solved.

  16. Using character overlap to improve language transformation

    NARCIS (Netherlands)

    Wubben, S.; Krahmer, E.; Bosch, A.P.J. van den

    2013-01-01

    Language transformation can be defined as translating between diachronically distinct language variants. We investigate the transformation of Middle Dutch into Modern Dutch by means of machine translation. We demonstrate that by using character overlap the performance of the machine translation proce

  17. Chromosome Segregation: Organizing Overlap at the Midzone

    NARCIS (Netherlands)

    Janson, M.E.; Tran, P.T.

    2008-01-01

    Sets of overlapping microtubules support the segregation of chromosomes by linking the poles of mitotic spindles. Recent work examines the effect of putting these linkages under pressure by the activation of dicentric chromosomes and sheds new light on the structural role of several well-known spind

  18. Autism and ADHD: Overlapping and Discriminating Symptoms

    Science.gov (United States)

    Mayes, Susan Dickerson; Calhoun, Susan L.; Mayes, Rebecca D.; Molitoris, Sarah

    2012-01-01

    Children with ADHD and autism have some similar features, complicating a differential diagnosis. The purpose of our study was to determine the degree to which core ADHD and autistic symptoms overlap in and discriminate between children 2-16 years of age with autism and ADHD. Our study demonstrated that 847 children with autism were easily…

  19. Molt-breeding overlap alters molt dynamics and behavior in zebra finches, Taeniopygia guttata castanotis.

    Science.gov (United States)

    Echeverry-Galvis, Maria A; Hau, Michaela

    2012-06-01

    Costly events in the life history cycle of organisms such as reproduction, migration and pelage/plumage replacement are typically separated in time to maximize their outcome. Such temporal separation is thought to be necessitated by energetical trade-offs, and mediated through physiological processes. However, certain species, such as tropical birds, are able to overlap two costly life history stages: reproduction and feather replacement. It has remained unclear how both events progress when they co-occur over extended periods of time. Here we determined the consequences and potential costs of such overlap by comparing molt and behavioral patterns in both sexes of captive zebra finches (Taeniopygia guttata castanotis) that were solely molting or were overlapping breeding and molt. Individuals overlapping the early stages of breeding with molt showed a roughly 40% decrease in the growth rate of individual feathers compared with birds that were molting but not breeding. Further, individuals that overlapped breeding and molt tended to molt fewer feathers simultaneously and exhibited longer intervals between shedding consecutive feathers on the tail or the same wing as well as delays in shedding corresponding flight feathers on opposite sides. Overlapping individuals also altered their time budgets: they devoted more than twice the time to feeding while halving the time spent for feather care in comparison to molt-only individuals. These data provide experimental support for the previously untested hypothesis that when molt and reproduction overlap in time, feather replacement will occur at a slower and less intense rate. There were no sex differences in any of the variables assessed, except for a tendency in females to decline body condition more strongly over time during the overlap than males. Our data indicate the existence of major consequences of overlapping breeding and molt, manifested in changes in both molt dynamics and time budgets of both sexes. It is

  20. On the acoustics of overlapping laughter in conversational speech

    NARCIS (Netherlands)

    Truong, Khiet P.; Trouvain, Jürgen

    2012-01-01

    The social nature of laughter invites people to laugh together. This joint vocal action often results in overlapping laughter. In this paper, we show that the acoustics of overlapping laughs are different from non-overlapping laughs. We found that overlapping laughs are stronger prosodically marked

  1. Curriculum-based measurement of oral reading: A preliminary investigation of confidence interval overlap to detect reliable growth.

    Science.gov (United States)

    Van Norman, Ethan R

    2016-09-01

    Curriculum-based measurement of oral reading (CBM-R) progress monitoring data is used to measure student response to instruction. Federal legislation permits educators to use CBM-R progress monitoring data as a basis for determining the presence of specific learning disabilities. However, decision making frameworks originally developed for CBM-R progress monitoring data were not intended for such high stakes assessments. Numerous documented issues with trend line estimation undermine the validity of using slope estimates to infer progress. One proposed recommendation is to use confidence interval overlap as a means of judging reliable growth. This project explored the degree to which confidence interval overlap was related to true growth magnitude using simulation methodology. True and observed CBM-R scores were generated across 7 durations of data collection (range 6-18 weeks), 3 levels of dataset quality or residual variance (5, 10, and 15 words read correct per minute) and 2 types of data collection schedules. Descriptive and inferential analyses were conducted to explore interactions between overlap status, progress monitoring scenarios, and true growth magnitude. A small but statistically significant interaction was observed between overlap status, duration, and dataset quality, b = -0.004, t(20992) =-7.96, p < .001. In general, confidence interval overlap does not appear to meaningfully account for variance in true growth across many progress monitoring conditions. Implications for research and practice are discussed. Limitations and directions for future research are addressed. (PsycINFO Database Record

  2. Coeliac disease and autoimmune disease-genetic overlap and screening.

    Science.gov (United States)

    Lundin, Knut E A; Wijmenga, Cisca

    2015-09-01

    Coeliac disease is a treatable, gluten-induced disease that often occurs concurrently with other autoimmune diseases. In genetic studies since 2007, a partial genetic overlap between these diseases has been revealed and further insights into the pathophysiology of coeliac disease and autoimmunity have been gained. However, genetic screening is not sensitive and specific enough to accurately predict disease development. The current method to diagnose individuals with coeliac disease is serological testing for the presence of autoantibodies whilst the patient is on a regular, gluten-containing diet, followed by gastroduodenoscopy with duodenal biopsy. Serological test results can also predict the probability of coeliac disease development, even if asymptomatic. In patients with autoimmune diseases known to occur alongside coeliac disease (particularly type 1 diabetes mellitus or thyroid disorders), disease screening-and subsequent treatment if coeliac disease is detected-could have beneficial effects on progression or potential complications of both diseases, owing to the effectiveness of gluten-free dietary interventions in coeliac disease. However, whether diagnosis of coeliac disease and subsequent dietary treatment can prevent autoimmune diseases is debated. In this Review, the genetic and immunological features of coeliac disease, overlap with other autoimmune diseases and implications for current screening strategies will be discussed.

  3. MOHCS: Towards Mining Overlapping Highly Connected Subgraphs

    CERN Document Server

    Lin, Xiahong; Chen, Kefei; Chiu, David K Y

    2008-01-01

    Many networks in real-life typically contain parts in which some nodes are more highly connected to each other than the other nodes of the network. The collection of such nodes are usually called clusters, communities, cohesive groups or modules. In graph terminology, it is called highly connected graph. In this paper, we first prove some properties related to highly connected graph. Based on these properties, we then redefine the highly connected subgraph which results in an algorithm that determines whether a given graph is highly connected in linear time. Then we present a computationally efficient algorithm, called MOHCS, for mining overlapping highly connected subgraphs. We have evaluated experimentally the performance of MOHCS using real and synthetic data sets from computer-generated graph and yeast protein network. Our results show that MOHCS is effective and reliable in finding overlapping highly connected subgraphs. Keywords-component; Highly connected subgraph, clustering algorithms, minimum cut, m...

  4. Overlap Removal Methods for Data Projection Algorithms

    OpenAIRE

    Spicker, Marc

    2011-01-01

    Projection algorithms map high dimensional data points to lower dimensions. However, when adding arbitrary shaped objects as representatives for these data points, they may intersect. The positions of these representatives have to be modi ed in order to remove existing overlaps. There are multiple algorithms designed to deal with this layout adjustment problem, which lead to very di erent results. These adjustment strategies are evaluated according to di erent measures for comparison: euclide...

  5. Overlap fermions on a twisted mass sea

    CERN Document Server

    Bär, O; Schäefer, S; Scorzato, L; Shindler, A

    2006-01-01

    We present first results of a mixed action project. We analyze gauge configurations generated with two flavors of dynamical twisted mass fermions. Neuberger's overlap Dirac operator is used for the valence sector. The various choices in the setup of the simulation are discussed. We employ chiral perturbation theory to describe the effects of using different actions in the sea and valence sector at non-zero lattice spacing.

  6. The overlap between cyberbullying and traditional bullying.

    Science.gov (United States)

    Waasdorp, Tracy E; Bradshaw, Catherine P

    2015-05-01

    Cyberbullying appears to be on the rise among adolescents due in part to increased access to electronic devices and less online supervision. Less is known about how cyberbullying differs from traditional bullying which occurs in person and the extent to which these two forms overlap. Our first aim was to examine the overlap of traditional bullying (relational, verbal, and physical) with cyberbullying. The second aim examined student- and school-level correlates of cyber victimization as compared to traditional victims. The final aim explored details of the cyberbullying experience (e.g., who sent the message, how was the message sent, and what was the message about). Data came from 28,104 adolescents (grades, 9-12) attending 58 high schools. Approximately 23% of the youth reported being victims of any form of bullying (cyber, relational, physical, and verbal) within the last month, with 25.6% of those victims reporting being cyberbullied. The largest proportion (50.3%) of victims reported they were victimized by all four forms, whereas only 4.6% reported being only cyberbullied. Multilevel analyses indicated that as compared to those who were only traditionally bullied, those who were cyberbullied were more likely to have externalizing (odds ratio = 1.44) and internalizing symptoms (odds ratio = 1.25). Additional analyses examined detailed characteristics of the cyberbullying experiences, indicating a relatively high level of overlap between cyber and traditional bullying. Implications for preventive interventions targeting youth involved with cyberbullying and its overlap with other forms of bullying are discussed. Copyright © 2015 Society for Adolescent Health and Medicine. Published by Elsevier Inc. All rights reserved.

  7. Voriconazole-induced periostitis in a patient with overlap syndromes.

    Science.gov (United States)

    Hirota, Keisho; Yasoda, Akihiro; Fujii, Toshihito; Inagaki, Nobuya

    2014-03-05

    A 52-year-old woman with overlap syndrome and interstitial pneumonia underwent immunosuppressive therapy and she was suspected to suffer from pulmonary aspergillosis. Oral voriconazole was initiated, and a rapid elevation of alkaline phosphatase (ALP) occurred after 4 weeks. After 2 months, the patient presented diffuse pain in bilateral skeletal regions, and bone scintigraphy revealed bilateral multiple areas of increased radiotracer uptake. We suspected the skeletal involvement as voriconazole-induced periostitis. Actually, the plasma fluoride level was increased. Voriconazole was replaced with itraconazole, and after 3 weeks, the patient stopped complaining of bone pain concomitant with the decrease in ALP. Voriconazole-induced periostitis is a rare condition but had previously been reported in solid organ or patients with bone marrow transplant who received a long-term voriconazole therapy. Our present case is distinctive of previous ones, because it occurred in a patient with connective tissue disease which had its rapid progression.

  8. Separating cyclostationary signals from spectrally overlapping interference

    Institute of Scientific and Technical Information of China (English)

    GUO Jie; LIU Yun; YE Zhi-hui; SONG Tie-cheng; SHEN Lian-feng

    2006-01-01

    This paper studies an algorithm about separating spectmlly overlapping signals using the cyclostationary properties of signals.On the basis of direct sequence spread system (DSSS),frequency shift filter is added into the receiver of the communication system.Although the structure of frequency shift filter is more complicated than the time-domain filter,it uses both time correlations and frequency spectrum correlations so it can achieve better performances on separating the overlapping signals.After the analysis of cyclostationary characteristic and frequency spectrum correlation,the structure of the frequency shift filter can be gained.Then,a self-adaptive algorithm is utilized for the purpose of achieving optimum multidimensional tap weights of frequency shift components.The simulation results indicate that this method can efficiently separate overlapping signals,and its error rate is lower than the time-domain filter or DSSS system by two orders of magnitude on the condition that high-power interference is added into the system.

  9. Function approximation using adaptive and overlapping intervals

    Energy Technology Data Exchange (ETDEWEB)

    Patil, R.B.

    1995-05-01

    A problem common to many disciplines is to approximate a function given only the values of the function at various points in input variable space. A method is proposed for approximating a function of several to one variable. The model takes the form of weighted averaging of overlapping basis functions defined over intervals. The number of such basis functions and their parameters (widths and centers) are automatically determined using given training data and a learning algorithm. The proposed algorithm can be seen as placing a nonuniform multidimensional grid in the input domain with overlapping cells. The non-uniformity and overlap of the cells is achieved by a learning algorithm to optimize a given objective function. This approach is motivated by the fuzzy modeling approach and a learning algorithms used for clustering and classification in pattern recognition. The basics of why and how the approach works are given. Few examples of nonlinear regression and classification are modeled. The relationship between the proposed technique, radial basis neural networks, kernel regression, probabilistic neural networks, and fuzzy modeling is explained. Finally advantages and disadvantages are discussed.

  10. Burnout-depression overlap: a review.

    Science.gov (United States)

    Bianchi, Renzo; Schonfeld, Irvin Sam; Laurent, Eric

    2015-03-01

    Whether burnout is a form of depression or a distinct phenomenon is an object of controversy. The aim of the present article was to provide an up-to-date review of the literature dedicated to the question of burnout-depression overlap. A systematic literature search was carried out in PubMed, PsycINFO, and IngentaConnect. A total of 92 studies were identified as informing the issue of burnout-depression overlap. The current state of the art suggests that the distinction between burnout and depression is conceptually fragile. It is notably unclear how the state of burnout (i.e., the end stage of the burnout process) is conceived to differ from clinical depression. Empirically, evidence for the distinctiveness of the burnout phenomenon has been inconsistent, with the most recent studies casting doubt on that distinctiveness. The absence of consensual diagnostic criteria for burnout and burnout research's insufficient consideration of the heterogeneity of depressive disorders constitute major obstacles to the resolution of the raised issue. In conclusion, the epistemic status of the seminal, field-dominating definition of burnout is questioned. It is suggested that systematic clinical observation should be given a central place in future research on burnout-depression overlap.

  11. Optimizing packing fraction in granular media composed of overlapping spheres.

    Science.gov (United States)

    Roth, Leah K; Jaeger, Heinrich M

    2016-01-28

    What particle shape will generate the highest packing fraction when randomly poured into a container? In order to explore and navigate the enormous search space efficiently, we pair molecular dynamics simulations with artificial evolution. Arbitrary particle shape is represented by a set of overlapping spheres of varying diameter, enabling us to approximate smooth surfaces with a resolution proportional to the number of spheres included. We discover a family of planar triangular particles, whose packing fraction of ϕ ∼ 0.73 is among the highest experimental results for disordered packings of frictionless particles. We investigate how ϕ depends on the arrangement of spheres comprising an individual particle and on the smoothness of the surface. We validate the simulations with experiments using 3D-printed copies of the simplest member of the family, a planar particle consisting of three overlapping spheres with identical radius. Direct experimental comparison with 3D-printed aspherical ellipsoids demonstrates that the triangular particles pack exceedingly well not only in the limit of large system size but also when confined to small containers.

  12. Vertical overlap of probability density functions of cloud and precipitation hydrometeors: CLOUD AND PRECIPITATION PDF OVERLAP

    Energy Technology Data Exchange (ETDEWEB)

    Ovchinnikov, Mikhail [Pacific Northwest National Laboratory, Richland Washington USA; Lim, Kyo-Sun Sunny [Pacific Northwest National Laboratory, Richland Washington USA; Korea Atomic Energy Research Institute, Daejeon Republic of Korea; Larson, Vincent E. [Department of Mathematical Sciences, University of Wisconsin-Milwaukee, Milwaukee Wisconsin USA; Wong, May [Pacific Northwest National Laboratory, Richland Washington USA; National Center for Atmospheric Research, Boulder Colorado USA; Thayer-Calder, Katherine [National Center for Atmospheric Research, Boulder Colorado USA; Ghan, Steven J. [Pacific Northwest National Laboratory, Richland Washington USA

    2016-11-05

    Coarse-resolution climate models increasingly rely on probability density functions (PDFs) to represent subgrid-scale variability of prognostic variables. While PDFs characterize the horizontal variability, a separate treatment is needed to account for the vertical structure of clouds and precipitation. When sub-columns are drawn from these PDFs for microphysics or radiation parameterizations, appropriate vertical correlations must be enforced via PDF overlap specifications. This study evaluates the representation of PDF overlap in the Subgrid Importance Latin Hypercube Sampler (SILHS) employed in the assumed PDF turbulence and cloud scheme called the Cloud Layers Unified By Binormals (CLUBB). PDF overlap in CLUBB-SILHS simulations of continental and tropical oceanic deep convection is compared with overlap of PDF of various microphysics variables in cloud-resolving model (CRM) simulations of the same cases that explicitly predict the 3D structure of cloud and precipitation fields. CRM results show that PDF overlap varies significantly between different hydrometeor types, as well as between PDFs of mass and number mixing ratios for each species, - a distinction that the current SILHS implementation does not make. In CRM simulations that explicitly resolve cloud and precipitation structures, faster falling species, such as rain and graupel, exhibit significantly higher coherence in their vertical distributions than slow falling cloud liquid and ice. These results suggest that to improve the overlap treatment in the sub-column generator, the PDF correlations need to depend on hydrometeor properties, such as fall speeds, in addition to the currently implemented dependency on the turbulent convective length scale.

  13. Effects of surface chemistry on the porous structure of coal. Quarterly technical progress report, October 1996--December 1996

    Energy Technology Data Exchange (ETDEWEB)

    Anderson, S.A.; Hatcher, P.G.; Radovic, L.R.

    1997-01-01

    Selective presaturation and saturation transfer {sup 129}Xe NMR experiments were performed on a high volatile C bituminous coal and an anthracite. The experiments detect the movement of xenon atoms among different regions of the internal surface, and to the external surface of the coal particles. The results indicate that adsorbed xenon atoms can move to the external surface of the bituminous coal significantly faster than in the anthracite. The results are interpreted in terms of the porous structure of the coals.

  14. [A structural assessment of the role of the cell surface carbohydrates of Rhizobium in the Rhizobium/legume symbiosis]. Progress report, June 1989--June 1991

    Energy Technology Data Exchange (ETDEWEB)

    Hollingsworth, R.I.

    1991-12-31

    Research continued on the study of cell surface carbohydrates of Rhizobium. Objectives include: To characterize, at a structural level, the differences between the lipopolysaccharides of a representative number of strains from different Rhizobium species to determine which features of LPS structure are species-specific and might, therefore, be determinants of host specificity. Determine the effect(s) of nod gene induction on the structure of Rhizobium lipopolysaccharides and determine whether synthesis of a modified LPS molecule or a new surface glycoconjugate is initiated by nod gene induction. Develop a non-chemical means for rapidly screening large numbers of bacterial strains in order to determine which glycoconjugate structural features are conserved between strains of the same species. Provide the necessary structural information which, when coupled with developments in the rapidly expanding field of Rhizobium genetics, should lead to a clear understanding of the role of Rhizobium surface glycoconjugates in host/symbiont interactions. Progress is discussed.

  15. Overlap Quark Propagator in Coulomb Gauge QCD

    CERN Document Server

    Mercado, Ydalia Delgado; Schröck, Mario

    2014-01-01

    The chirally symmetric Overlap quark propagator is explored in Coulomb gauge. This gauge is well suited for studying the relation between confinement and chiral symmetry breaking, since confinement can be attributed to the infrared divergent Lorentz-vector dressing function. Using quenched gauge field configurations on a $20^4$ lattice, the quark propagator dressing functions are evaluated, the dynamical quark mass is extracted and the chiral limit of these quantities is discussed. By removing the low-lying modes of the Dirac operator, chiral symmetry is artificially restored. Its effect on the dressing functions is discussed.

  16. THE PHASE-OFFSET OVERLAPPED WAVE TECHNIQUE

    Institute of Scientific and Technical Information of China (English)

    Liang Dequn; Liang Weihua; Sun Changnian

    2003-01-01

    A new digital communication technology based on the Phase-Offset Overlapped Waves (POOW) has been introduced in this letter. The waves can be considered as a special multicarrier different from traditional ones. The sub-waves in a coded word's period of the POOW are sine waves and have the same frequencies, but different starting phases. The most important characteristic is that these sub-waves are the piecewise functions and not orthogonal in a code word period. The decoding can be implemented by solving a linear equation group.This code has very high efficiency and thus the data transmission rate is increased greatly.

  17. Technology initiatives with government/business overlap

    Science.gov (United States)

    Knapp, Robert H., Jr.

    2015-03-01

    Three important present-day technology development settings involve significant overlap between government and private sectors. The Advanced Research Project Agency for Energy (ARPA-E) supports a wide range of "high risk, high return" projects carried out in academic, non-profit or private business settings. The Materials Genome Initiative (MGI), based in the White House, aims at radical acceleration of the development process for advanced materials. California public utilities such as Pacific Gas & Electric operate under a structure of financial returns and political program mandates that make them arms of public policy as much as independent businesses.

  18. $B_{K}$ from quenched overlap QCD

    CERN Document Server

    Garron, N; Hölbling, C; Lellouch, L P; Rebbi, C

    2003-01-01

    We present an exploratory calculation of the standard model Delta S=2 matrix element relevant for indirect CP violation in K -> pi pi decays. The computation is performed with overlap fermions in the quenched approximation at beta=6.0 on a 16^3x32 lattice. The resulting bare matrix element is renormalized non-perturbatively. Our preliminary result is B_K^{NDR}(2 GeV)=0.61(7), where the error does not yet include an estimate of systematic uncertainties.

  19. Prevention of biofouling on heat transfer surfaces of ocean thermal energy converters. Progress report, May 1, 1975--November 30, 1975

    Energy Technology Data Exchange (ETDEWEB)

    Ostrozynski, R.L.; Jones, P.E.

    1975-12-01

    The objectives of the program were to develop chemical processes utilizing a combination of certain fluorochemicals and tribulyltin based toxicants for treating the surfaces of metals which may be used to fabricate OTEC heat exchangers, and to demonstrate the effectiveness of these surface treatments as antibiofoulants. Aluminium alloy No. 3003-H14 and titanium were testd, neither of which proved satisfactory. (WDM)

  20. Prevention of biofouling on heat transfer surfaces of ocean thermal energy converters. Progress report, May 1, 1975--November 30, 1975

    Energy Technology Data Exchange (ETDEWEB)

    Ostrozynski, R.L.; Jones, P.E.

    1975-12-01

    The objectives of the program were to develop chemical processes utilizing a combination of certain fluorochemicals and tribulyltin based toxicants for treating the surfaces of metals which may be used to fabricate OTEC heat exchangers, and to demonstrate the effectiveness of these surface treatments as antibiofoulants. Aluminium alloy No. 3003-H14 and titanium were testd, neither of which proved satisfactory. (WDM)

  1. Sheath overlap during very large scale plasma source ion implantation

    Science.gov (United States)

    Cluggish, B. P.; Munson, C. P.

    1998-12-01

    Measurements of plasma source ion implantation have been performed on a large target of complex geometry. The target consists of 1000 aluminum, automotive piston surrogates mounted on four racks; total surface area is over 16 m2. The four racks are positioned parallel to each other, 0.25 m apart, in an 8 m3 vacuum chamber. The racks of pistons are immersed in a capacitive radio frequency plasma, with an argon gas pressure of 20-65 mPa. Langmuir probe measurements indicate that the plasma density profile is highly nonuniform, due to particle losses to the racks of pistons. The plasma ions are implanted into the pistons by pulse biasing the workpiece to negative voltages as low as -18 kV for up to 20 μs. During the voltage pulse, the high-voltage sheaths from adjacent racks of pistons converge towards each other. At plasma densities less than 109 cm-3 the sheaths are observed to overlap. Measurements of the sheath overlap time are compared with standard analytic theory and with simulations run with a two-dimensional particle-in-cell code.

  2. Heterogeneity of asthma–COPD overlap syndrome

    Science.gov (United States)

    Joo, Hyonsoo; Han, Deokjae; Lee, Jae Ha; Rhee, Chin Kook

    2017-01-01

    Many patients suffering from asthma or COPD have overlapping features of both diseases. However, a phenotypical approach for evaluating asthma–COPD overlap syndrome (ACOS) has not been established. In this report, we examined the phenotypes in patients with ACOS. Patients diagnosed with ACOS between 2011 and 2015 were identified and classified into four phenotype groups. Group A was composed of patients who smoked <10 pack years and had blood eosinophil counts ≥300. Group B was composed of patients who smoked <10 pack years and had blood eosinophil counts <300. Group C was composed of patients who smoked ≥10 pack years and had blood eosinophil counts ≥300. Group D was composed of patients who smoked <10 pack years and had blood eosinophil counts <300. Clinical characteristics were analyzed and compared among groups. Comparisons were made among 103 ACOS patients. Patients in group D were oldest, while patients in group A were youngest. There were relatively more female patients in groups A and B; the majority of patients in groups C and D were male. The degree of airflow obstruction was most severe in group C. The rate of being free of severe exacerbation was significantly lower in group C than in the other groups. In this study, each ACOS phenotype showed different characteristics. The proportion of patients free of severe exacerbation differed significantly among groups. At this time, further studies on the phenotypes of ACOS are required.

  3. Adaptive overlapped sub-blocks contrast enhancement

    Science.gov (United States)

    Chen, Anqiu; Yuan, Fei; Liu, Jing; Liu, Siqi; Li, An; Zheng, Zhenrong

    2016-09-01

    In this paper, an overlapped sub-block gray-level average method for contrast enhancement is presented. The digital image correction of uneven illumination under microscope transmittance is a problem in image processing, also sometimes the image in the dark place need to correct the uneven problem. A new correction method was proposed based on the mask method and sub-blocks gray-level average method because Traditional mask method and background fitting method are restricted due to application scenarios, and the corrected image brightness is low by using background fitting method, so it has some limitations of the application. In this paper, we introduce a new method called AOSCE for image contrast enhancement. The image is divided into many sub-blocks which are overlapped, calculate the average gray-level of the whole image as M and the calculate the average gray-level of each one as mi, next for each block it can get d = mi - m, each block minus d to get a new image, and then get the minimum gray-level of each block into a matrix DD to get the background, and use bilinearity to get the same scale of the image. over fitting the image in matlab in order to get smoother image, then minus the background to get the contrast enhancement image.

  4. Symptom overlap in anxiety and multiple sclerosis.

    LENUS (Irish Health Repository)

    O Donnchadha, Seán

    2013-02-14

    BACKGROUND: The validity of self-rated anxiety inventories in people with multiple sclerosis (pwMS) is unclear. However, the appropriateness of self-reported depression scales has been widely examined. Given somatic symptom overlap between depression and MS, research emphasises caution when using such scales. OBJECTIVE: This study evaluates symptom overlap between anxiety and MS in a group of 33 individuals with MS, using the Beck Anxiety Inventory (BAI). METHODS: Participants underwent a neurological examination and completed the BAI. RESULTS: A novel procedure using hierarchical cluster analysis revealed three distinct symptom clusters. Cluster one (\\'wobbliness\\' and \\'unsteady\\') grouped separately from all other BAI items. These symptoms are well-recognised MS-related symptoms and we question whether their endorsement in pwMS can be considered to reflect anxiety. A modified 19-item BAI (mBAI) was created which excludes cluster one items. This removal reduced the number of MS participants considered \\'anxious\\' by 21.21% (low threshold) and altered the level of anxiety severity for a further 27.27%. CONCLUSION: Based on these data, it is suggested that, as with depression measures, researchers and clinicians should exercise caution when using brief screening measures for anxiety in pwMS.

  5. Diffuse interstitial lung disease: overlaps and uncertainties

    Energy Technology Data Exchange (ETDEWEB)

    Walsh, Simon L.F.; Hansell, David M. [Royal Brompton Hospital, Department of Radiology, London (United Kingdom)

    2010-08-15

    Histopathological analysis of lung biopsy material allows the diagnosis of idiopathic interstitial pneumonias; however, the strength of this diagnosis is sometimes subverted by interobserver variation and sampling. The American Thoracic Society and European Respiratory Society recommendations of 2002 provide a framework for the diagnosis of interstitial lung disease (ILD) and proposed an integrated clinical, radiological and histopathological approach. These recommendations represent a break with tradition by replacing the 'gold standard' of histopathology with the combined 'silver standards' of clinical, imaging and histopathological information. One of the pitfalls of a rigid classification system for the diagnosis of interstitial lung disease is its failure to accommodate the phenomenon of overlapping disease patterns. This article reviews the various ways that interstitial lung disease may be classified and discusses their applicability. In addition the issue of overlap disease patterns is considered in the context of histopathological interobserver variation and sampling error and how a pigeonhole approach to disease classification may overlook these hybrid entities. (orig.)

  6. Activation of words with phonological overlap

    Directory of Open Access Journals (Sweden)

    Claudia K. Friedrich

    2013-08-01

    Full Text Available Multiple lexical representations overlapping with the input (cohort neighbors are temporarily activated in the listener’s mental lexicon when speech unfolds in time. Activation for cohort neighbors appears to rapidly decline as soon as there is mismatch with the input. However, it is a matter of debate whether or not they are completely excluded from further processing. We recorded behavioral data and event-related brain potentials (ERPs in auditory-visual word onset priming during a lexical decision task. As primes we used the first two syllables of spoken German words. In a carrier word condition, the primes were extracted from spoken versions of the target words (ano-ANORAK 'anorak'. In a cohort neighbor condition, the primes were taken from words that overlap with the target word up to the second nucleus (ana- taken from ANANAS 'pineapple'. Relative to a control condition, where primes and targets were unrelated, lexical decision responses for cohort neighbors were delayed. This reveals that cohort neighbors are disfavored by the decision processes at the behavioral front end. In contrast, left-anterior ERPs reflected long-lasting facilitated processing of cohort neighbors. We interpret these results as evidence for extended parallel processing of cohort neighbors. That is, in parallel to the preparation and elicitation of delayed lexical decision responses to cohort neighbors, aspects of the processing system appear to keep track of those less efficient candidates.

  7. Progress in the understanding of surface structure and surfactant influence on the electrocatalytic activity of gold nanoparticles

    Energy Technology Data Exchange (ETDEWEB)

    Ferreira, V.C. [CQB, Departamento de Quimica e Bioquimica, Faculdade de Ciencias da Universidade de Lisboa, Campo Grande, 1749-016 Lisboa (Portugal); CIQ-UP, Linha 4, Departamento de Quimica, Faculdade de Ciencias da Universidade do Porto, Rua do Campo Alegre 687, 4169-007 Porto (Portugal); Solla-Gullon, J.; Aldaz, A. [Instituto Universitario de Electroquimica, Universidad de Alicante, Apartado 99, 03080 Alicante (Spain); Silva, F. [CIQ-UP, Linha 4, Departamento de Quimica, Faculdade de Ciencias da Universidade do Porto, Rua do Campo Alegre 687, 4169-007 Porto (Portugal); Abrantes, L.M., E-mail: luisa.abrantes@fc.ul.pt [CQB, Departamento de Quimica e Bioquimica, Faculdade de Ciencias da Universidade de Lisboa, Campo Grande, 1749-016 Lisboa (Portugal)

    2011-11-01

    Research highlights: > Electrochemical behaviour of AuNPs depends on the facets present in their surface. > Cubic and rod shaped nanoparticles comprise distinct crystallographic orientation. > Key rule of surfactant on the selective availability of specific surface domains. > AA oxidation at less stabilised (1 1 1) rod facets displays single-crystal response. - Abstract: The preparation of gold nanoparticles (Au-NPs) displaying specific shape, size and surface crystallographic domains has been investigated aiming to clarify the effect of the surface crystallographic orientation, of the synthesised nanoparticles, and surfactant influence on the electrochemical response of the ITO/Au-NPs modified electrodes. Polymorphic and nanorod-shaped Au-NPs have been obtained using distinct synthetic procedures in the presence of cetyltrimethylammonium bromide (CTAB), through seed-mediated growth methods, displaying distinct surface crystallographic domains confirmed by transmission electron microscopy, X-ray diffraction analysis and under potential deposition (UPD) of lead. The nanoparticles have been physically immobilised by casting on indium tin oxide (ITO) surfaces and the electrocatalytic activity of the Au-NPs evaluated using the ascorbic acid (AA) oxidation reaction, by cyclic voltammetry. The polymorphic and distinct surface crystallographic orientations of the Au-NPs were reflected in an irreproducible electrochemical response. Using gold nanorods comprising (1 1 1) and (1 1 0) facets and gold nanocubes consisting of faces displaying (1 0 0) surface domains, by contrasting the behaviour of CTAB-stabilised and clean particles, it has been possible to verify that the distinct voltammetric results are due to the exposure of specific crystallographic orientations owing to dissimilar interaction strength of CTAB with those facets.

  8. He atom-surface scattering: Surface dynamics of insulators, overlayers and crystal growth. Progress report, May 1, 1991--April 30, 1992

    Energy Technology Data Exchange (ETDEWEB)

    1992-05-01

    Investigations in this laboratory have focused on the surface structure and dynamics of ionic insulators and on epitaxial growth onto alkali halide crystals. In the later the homoepitaxial growth of NaCl/NaCl(001) and the heteroepitaxial growth of KBr/NaCl(001), NaCl/KBr(001) and KBr/RbCl(001) have been studied by monitoring the specular He scattering as a function of the coverage and by measuring the angular and energy distributions of the scattered He atoms. These data provide information on the surface structure, defect densities, island sizes and surface strain during the layer-by-layer growth. The temperature dependence of these measurements also provides information on the mobilities of the admolecules. He atom scattering is unique among surface probes because the low-energy, inert atoms are sensitive only to the electronic structure of the topmost surface layer and are equally applicable to all crystalline materials. It is proposed for the next year to exploit further the variety of combinations possible with the alkali halides in order to carry out a definitive study of epitaxial growth in the ionic insulators. The work completed so far, including measurements of the Bragg diffraction and surface dispersion at various stages of growth, appears to be exceptionally rich in detail, which is particularly promising for theoretical modeling. In addition, because epitaxial growth conditions over a wide range of lattice mismatches is possible with these materials, size effects in growth processes can be explored in great depth. Further, as some of the alkali halides have the CsCl structure instead of the NaCl structure, we can investigate the effects of the heteroepitaxy with materials having different lattice preferences. Finally, by using co-deposition of different alkali halides, one can investigate the formation and stability of alloys and even alkali halide superlattices.

  9. Overlap Technique for End-Cap Seals on Cylindrical Magnetic Shields

    CERN Document Server

    Malkowski, S; Boissevain, J; Daurer, C; Filippone, B W; Hona, B; Plaster, B; Woods, D; Yan, H

    2013-01-01

    We present results from studies of the effectiveness of an overlap technique for forming a magnetic seal across a gap at the boundary between a cylindrical magnetic shield and an end-cap. In this technique a thin foil of magnetic material overlaps the two surfaces, thereby spanning the gap across the cylinder and the end-cap, with the magnetic seal then formed by clamping the thin magnetic foil to the surfaces of the cylindrical shield and the end-cap on both sides of the gap. In studies with a prototype 31-cm diameter, 91-cm long, 0.16-cm thick cylindrical magnetic shield and flared end-cap, the magnetic shielding performance of our overlap technique is comparable to that obtained with the conventional method in which the end-cap is placed in direct lapped contact with the cylindrical shield via through bolts or screws.

  10. Phonological and Orthographic Overlap Effects in Fast and Masked Priming

    Science.gov (United States)

    Frisson, Steven; Bélanger, Nathalie N.; Rayner, Keith

    2014-01-01

    We investigated how orthographic and phonological information is activated during reading, using a fast priming task, and during single word recognition, using masked priming. Specifically, different types of overlap between prime and target were contrasted: high orthographic and high phonological overlap (track-crack), high orthographic and low phonological overlap (bear-gear), or low orthographic and high phonological overlap (fruit-chute). In addition, we examined whether (orthographic) beginning overlap (swoop-swoon) yielded the same priming pattern as end (rhyme) overlap (track-crack). Prime durations were 32 and 50ms in the fast priming version, and 50ms in the masked priming version, and mode of presentation (prime and target in lower case) was identical. The fast priming experiment showed facilitatory priming effects when both orthography and phonology overlapped, with no apparent differences between beginning and end overlap pairs. Facilitation was also found when prime and target only overlapped orthographically. In contrast, the masked priming experiment showed inhibition for both types of end overlap pairs (with and without phonological overlap), and no difference for begin overlap items. When prime and target only shared principally phonological information, facilitation was only found with a long prime duration in the fast priming experiment, while no differences were found in the masked priming version. These contrasting results suggest that fast priming and masked priming do not necessarily tap into the same type of processing. PMID:24365065

  11. Phonological and orthographic overlap effects in fast and masked priming.

    Science.gov (United States)

    Frisson, Steven; Bélanger, Nathalie N; Rayner, Keith

    2014-01-01

    We investigated how orthographic and phonological information is activated during reading, using a fast priming task, and during single-word recognition, using masked priming. Specifically, different types of overlap between prime and target were contrasted: high orthographic and high phonological overlap (track-crack), high orthographic and low phonological overlap (bear-gear), or low orthographic and high phonological overlap (fruit-chute). In addition, we examined whether (orthographic) beginning overlap (swoop-swoon) yielded the same priming pattern as end (rhyme) overlap (track-crack). Prime durations were 32 and 50 ms in the fast priming version and 50 ms in the masked priming version, and mode of presentation (prime and target in lower case) was identical. The fast priming experiment showed facilitatory priming effects when both orthography and phonology overlapped, with no apparent differences between beginning and end overlap pairs. Facilitation was also found when prime and target only overlapped orthographically. In contrast, the masked priming experiment showed inhibition for both types of end overlap pairs (with and without phonological overlap) and no difference for begin overlap items. When prime and target only shared principally phonological information, facilitation was only found with a long prime duration in the fast priming experiment, while no differences were found in the masked priming version. These contrasting results suggest that fast priming and masked priming do not necessarily tap into the same type of processing.

  12. Direct and indirect effects in the regulation of overlapping promoters

    DEFF Research Database (Denmark)

    Bendtsen, Kristian Moss; Erdossy, Janos; Csiszovski, Zsolt

    2011-01-01

    Optimal response to environmental stimuli often requires activation of certain genes and repression of others. Dual function regulatory proteins play a key role in the differential regulation of gene expression. While repression can be achieved by any DNA binding protein through steric occlusion...... of RNA polymerase in the promoter region, activation often requires a surface on the regulatory protein to contact RNAP and thus facilitate transcription initiation. RNAP itself is also a DNA binding protein, therefore it can function as a transcriptional repressor. Searching the Escherichia coli...... that promoter interference depends on the characteristics of overlapping promoters. The model predicts that promoter strength and interference can be regulated separately, which provides unique opportunities for regulation. Our experimental data suggest that in principle any DNA binding protein can be used...

  13. Recombining overlapping BACs into single large BACs.

    Science.gov (United States)

    Kotzamanis, George; Kotsinas, Athanassios

    2015-01-01

    BAC clones containing the entire genomic region of a gene including the long-range regulatory elements are very useful for gene functional analysis. However, large genes often span more than the insert of a BAC clone, and single BACs covering the entire region of interest are not available. Here, we describe a general system for linking two or more overlapping BACs into a single clone. Two rounds of homologous recombination are used. In the first, the BAC inserts are subcloned into the pBACLink vectors. In the second, the two BACs are combined together. Multiple BACs in a contig can be combined by alternating use of the pBACLInk vectors, resulting in several BAC clones containing as much of the genomic region of a gene as required. Such BACs can then be used in gene expression studies and/or gene therapy applications.

  14. Social externalities, overlap and the poverty trap.

    Science.gov (United States)

    Kim, Young-Chul; Loury, Glenn C

    2014-12-01

    Previous studies find that some social groups are stuck in poverty traps because of network effects. However, these studies do not carefully analyze how these groups overcome low human capital investment activities. Unlike previous studies, the model in this paper includes network externalities in both the human capital investment stage and the subsequent career stages. This implies that not only the current network quality, but also the expectations about future network quality affect the current investment decision. Consequently, the coordinated expectation among the group members can play a crucial role in the determination of the final state. We define "overlap" for some initial skill ranges, whereby the economic performance of a group can be improved simply by increasing expectations of a brighter future. We also define "poverty trap" for some ranges, wherein a disadvantaged group is constrained by its history, and we explore the egalitarian policies to mobilize the group out of the trap.

  15. Upregulated baseline plasma CCL19 and CCR7 cell-surface expression on monocytes in early rheumatoid arthritis normalized during treatment and CCL19 correlated with radiographic progression

    DEFF Research Database (Denmark)

    Ellingsen, T; Hansen, I; Thorsen, J;

    2014-01-01

    OBJECTIVES: The aim of this study was to measure, in early rheumatoid arthritis (RA) patients, the concentration of CC-chemokine ligand 19 (CCL19) in plasma and the cell-surface expression of CC-chemokine receptor 7 (CCR7) on circulating monocytes and CD4+ T lymphocytes and to analyse correlations...... with disease activity and 5-year radiographic progression. METHOD: In disease-modifying anti-rheumatic drug (DMARD)-naïve RA patients (disease duration CCR7 cell-surface expression on monocytes and CD4+ T...... smoked, C-reactive protein (CRP), gender, age, number of tender (NTJ) and swollen joints (NSJ), and 28-joint Disease Activity Score (DAS28). Increased CCR7 expression on monocytes (p = 0.008) correlated to CRP (p = 0.006, r = 0.52) and normalized (n = 15) after 1 year (p = 0.02). CONCLUSIONS: In DMARD...

  16. Research progress of surface coating preparation on pure copper%纯铜表面涂层制备方法的研究进展

    Institute of Scientific and Technical Information of China (English)

    孙方红; 马壮; 刘亚良; 陆小龙; 鲍文杰

    2012-01-01

    The research progress of surface coating preparation on the pure copper is summarized and research results of thermal spray method, cold gas dynamic spray, electrospark deposition, laser clading, thermochemical reaction method, composite method are reviewed. The merits and demerits of different preparation method are analyzed. And the development trends of surface coating on pure copper are proposed.%总结纯铜表面涂层的研究现状,介绍热喷涂法、冷喷涂法、电火花沉积法、激光熔覆法、热化学反应法、复合法制备涂层的研究成果,分析各种制备方法的优缺点,展望今后纯铜表面涂层的发展方向.

  17. Effect of Ultraviolet Irradiation of the Implant Surface on Progression of Periimplantitis--A Pilot Study in Dogs.

    Science.gov (United States)

    Ishii, Kouken; Matsuo, Masato; Hoshi, Noriyuki; Takahashi, Shun-Suke; Kawamata, Ryota; Kimoto, Katsuhiko

    2016-02-01

    The objective of this study was to investigate morphologically the progression of periimplantitis around an ultraviolet (UV)-light-irradiated implant in dogs. Pure titanium implants (3.3 mm in diameter and 8 mm long) were placed into dog jawbone bilaterally. Implants on one side were irradiated with UV light for 15 minutes using a photodevice immediately before placement (UV group), whereas those on the other side were not irradiated (non-UV group). Osseointegration was confirmed 90 days after implant placement by radiography. Experimental periimplantitis was induced by the application of dental floss over 90 days. Clinical and radiographic examination and micro-computed tomography (micro-CT) were performed after 90 and 180 days, and bone resorption was measured. The bone-implant interface in tissue sections was examined by light microscopy. Bone resorption around the UV-irradiated implant was less pronounced than around the non-UV-irradiated implant in the ligature-induced periimplantitis model. Tissue section images revealed no contact and partial destruction at the bone-implant interface. Within the limitations of this preliminary investigation, it is suggested that UV-light-irradiated implants suppress spontaneous progression of periimplantitis.

  18. Online monitoring of the laser brazing of titanium overlap joints

    Science.gov (United States)

    Schmitt, R.; Vielhaber, K.; Donst, D.; Klocke, F.

    2007-06-01

    Image processing and thermography for its own are very versatile and established measurement techniques for many years. However, the combination of these two measurement technologies opens a new field of applications. The online monitoring of the laser-brazing of titanium overlap joints is such a new application. The laser brazing process for overlap joining of formed titanium sheets for the production of heat exchangers is presently being investigated at the Fraunhofer IPT. In comparison to conventional furnace brazing the laser brazing technology decreases substantially the heat impact and thus reduces the thermal material damage in the parts due to local selective heating in a laser beam focal spot. Even though the process is stable, errors in the brazing seam such as pores or unacceptable material oxidation can occur. To ensure a high quality an online process monitoring or even process control is necessary. But since the surface remains unchanged during this brazing process no geometrical inspection of the surface can be conducted. Therefore today's quality assurance performs x-ray or destructive testing. This paper demonstrates how the use of thermography in combination with image processing allows a machine integrated online monitoring of the laser brazing process. First the basic principals are presented which cover the fields of heat coupling, heat transmission and heat distribution as well as the temperature emission of light and the spectral properties of the laser beam shaping optic and so lead to the optical set-up. Then analysis algorithms are derived which characterize the process, detect process failures and make a seam tracking possible.

  19. Detecting overlapping instances in microscopy images using extremal region trees.

    Science.gov (United States)

    Arteta, Carlos; Lempitsky, Victor; Noble, J Alison; Zisserman, Andrew

    2016-01-01

    In many microscopy applications the images may contain both regions of low and high cell densities corresponding to different tissues or colonies at different stages of growth. This poses a challenge to most previously developed automated cell detection and counting methods, which are designed to handle either the low-density scenario (through cell detection) or the high-density scenario (through density estimation or texture analysis). The objective of this work is to detect all the instances of an object of interest in microscopy images. The instances may be partially overlapping and clustered. To this end we introduce a tree-structured discrete graphical model that is used to select and label a set of non-overlapping regions in the image by a global optimization of a classification score. Each region is labeled with the number of instances it contains - for example regions can be selected that contain two or three object instances, by defining separate classes for tuples of objects in the detection process. We show that this formulation can be learned within the structured output SVM framework and that the inference in such a model can be accomplished using dynamic programming on a tree structured region graph. Furthermore, the learning only requires weak annotations - a dot on each instance. The candidate regions for the selection are obtained as extremal region of a surface computed from the microscopy image, and we show that the performance of the model can be improved by considering a proxy problem for learning the surface that allows better selection of the extremal regions. Furthermore, we consider a number of variations for the loss function used in the structured output learning. The model is applied and evaluated over six quite disparate data sets of images covering: fluorescence microscopy, weak-fluorescence molecular images, phase contrast microscopy and histopathology images, and is shown to exceed the state of the art in performance.

  20. 全球变化下地表反照率研究进展%Research Progress on Surface Albedo under Global Change

    Institute of Scientific and Technical Information of China (English)

    肖登攀; 陶福禄; Moiwo Juana P

    2011-01-01

    Surface albedo is a critical consideration for energy balance at the land-air interface. It determines the allocation of radiant energy between the earth's surface and atmosphere. Changes in surface albedo affect the energy balance of land-air system, which could in turn lead to climate change. Land Use/Cover Change (LUCC) is an important element of global climate change. LUCC affects surface albedo, and thus climate change. Surface albedo is controlled by solar elevation angle, land surface nature, soil moisture, weather condition, etc. This paper presents an in-depth review of the driving factors of surface albedo. Conventional observations of surface albedo are point-based, and therefore have limited spatial representation. On the other hand, surface albedo retrieved by Re- mote Sensing (RS) could have a large spatial representation. However, RS-driven surthce albedo needs validation by ground-truth observations. Hence this paper reviews and epitomizes observational and RS-based analyses surface albedo. It also summarizes research progress in surface albedo in relation to global climate. Moreover, this review highlights the strengths, weaknesses and future directions of sufface-albedo/climate-change research. The points documented herein could profoundly augment current understanding about global climate change and related driving factors.%地表反照率表征地球表面对太阳辐射的反射能力,决定着地表与大气之间辐射能量的分配过程,是影响地球气候系统的关键变量。在全球变化日益突出的今天,地表反照率与全球变化的相互影响机制已经成为地球科学研究领域的热点问题之一。地表反照率的细微变化,会影响到地气系统的能量收支平衡,进而引起区域以至全球气候变化。详细介绍地表反照率影响因素、研究方法等方面的最新研究进展,并从全球变化的角度阐述地表反照率的研究动态及其研究方向。

  1. Geometrical constraint experimental determination of Raman lidar overlap profile.

    Science.gov (United States)

    Li, Jian; Li, Chengcai; Zhao, Yiming; Li, Jing; Chu, Yiqi

    2016-06-20

    A simple experimental method to determine the overlap profile of Raman lidar is presented in this paper. Based on Mie and Raman backscattering signals and a geometrically constrained condition, the overlap profile of a Raman lidar system can be determined. Our approach simultaneously retrieves the lidar ratio of aerosols, which is one of the most important sources of uncertainty in the overlap profile determination. The results indicate that the overlap factor is significantly influenced by the lidar ratio in experimental methods. A representative case study indicates that the correction of the overlap profile obtained by this method is practical and feasible.

  2. Condensed matter physics at surfaces and interfaces of solids. Progress report, February 1, 1991--January 31, 1992

    Energy Technology Data Exchange (ETDEWEB)

    Mele, E.J.

    1992-01-01

    This research program is focused on structural and elastic properties of crystalline solids and interfaces between solids. We are particularly interested in novel forms of structural ordering and the effects of this ordering on the lattice dynamical properties. We are currently studying structural and vibrational properties of the surfaces of the elemental alkaline earths (particularly Be), and structural phenomena in the doped fullerites.

  3. 细菌表面呈现技术研究进展%Progress in bacterial surface display

    Institute of Scientific and Technical Information of China (English)

    高荣凯; 张兆山

    2001-01-01

    自从首次描述外源蛋白在大肠杆菌表面呈现成功以来,细菌表面呈现技术得到了迅猛的发展,无论是革兰氏阴性菌还是革兰氏阳性菌都可用于异源蛋白的表面呈现,该技术被应用于微生物学、免疫学、分子生物学、疫苗学以及生物工程的多个领域的基础和应用研究%The bacterial surface display has gotten great development since the first examples of heterologous surface display on the surface of Escherichia coli was discribed. Not only the Gram negative bacteria but also the Gram positive bacteria can surface display the foreign proteins. And it has been employed as a tool for fundamental and applied research in microbiology, immunology, molecular biology, vaccinology and biotechnology.

  4. IMPLICATION OF LAKE WATER RESIDENCE TIME ON THE CLASSIFICATION OF NORWEGIAN SURFACE WATER SITES INTO PROGRESSIVE STAGES OF NITROGEN SATURATION

    Science.gov (United States)

    Seasonal behaviour of NO3- in surface water is often used as an indicator on a catchment's ability to retain N from atmospheric deposition. In this paper, we classify 12 pristine sites (five streams and seven lakes) in southernmost Norway according to the N saturation stage conce...

  5. Outcome of overlapping heterogenous drug-eluting stents and of overlapping drug-eluting and bare metal stents.

    Science.gov (United States)

    Burzotta, Francesco; Siviglia, Massimo; Altamura, Luca; Trani, Carlo; Leone, Antonio Maria; Romagnoli, Enrico; Mazzari, Mario Attilio; Mongiardo, Rocco; Niccoli, Giampaolo; Brancati, Marta; Biondi-Zoccai, Giuseppe; Rebuzzi, Antonio Giuseppe; Schiavoni, Giovanni; Crea, Filippo

    2007-02-01

    Overlapping homogenous drug-eluting stents (DESs) may be used instead of overlapping bare metal stents (BMSs) to treat coronary lesions longer than available stents. Yet, no data are available on patients treated with overlapping heterogenous DESs or DESs and BMSs. We prospectively assessed 9-month clinical outcome and 6-month angiographic late loss (evaluated at 5 different lesion segments) in a consecutive series of 40 patients who received overlapping homogenous DESs (sirolimus-eluting stent [SES] or paclitaxel-eluting stent [PES]), heterogenous DESs (SES + PES), or overlapping DESs and BMSs. In 8 patients (7 with angiographic follow-up) with overlapping heterogenous DESs, no angiographic or clinical adverse event was observed. Moreover, in-segment late loss was similar to that of patients who received homogenous DESs. In 8 patients (7 with angiographic follow-up) with overlapping DESs and BMSs, there was a higher incidence of major adverse events (3 repeat percutaneous coronary interventions and 1 death, 50% adverse event rate) and worse in-segment binary restenosis rate compared with patients treated with homogenous or heterogenous DESs (p = 0.02 and 0.012, respectively). Late lumen loss at the site of stent overlap showed significant differences according to type of overlapped stent (1.00 +/- 0.76 mm in DES-BMS overlap, 0.32 +/- 0.55 mm in PES-PES overlap, 0.13 +/- 0.11 in SES-PES overlap, and 0.08 +/- 0.10 mm in SES-SES overlap, p = 0.005). In conclusion, the present study suggests that overlap of DESs and BMSs should be avoided because the antirestenotic effect of DESs is skewed by contiguous BMS implantation. Overlap between SESs and PESs in this very preliminary report was associated with no specific adverse event.

  6. R&D progress in SRF surface preparation with centrifugal barrel polishing (cbp) for both Nb and Cu

    Energy Technology Data Exchange (ETDEWEB)

    Palczewski, Ari [JLAB

    2013-09-01

    Centrifugal Barrel polishing (CBP) is becoming a common R&D tool for SRF cavity preparation around the world. During the CBP process a cylindrically symmetric SRF cavity is filled with relatively cheap and environmentally friendly abrasive and sealed. The cavity is then spun around a cylindrically symmetric axis at high speeds uniformly conditioning the inner surface. This uniformity is especially relevant for SRF application because many times a single manufacturing defects limits cavity?s performance well below it?s theoretical limit. In addition CBP has created surfaces with roughness?s on the order of 10?s of nm which create a unique surface for wet chemistry or thin film deposition. CBP is now being utilized at Jefferson Laboratory, Fermi Laboratory and Cornell University in the US, Deutsches Elektronen-Synchrotron in Germany, Laboratori Nazionali di Legnaro in Italy, and Raja Ramanna Centre for Advanced Technology in India. In this talk we will present current CBP research from each lab including equipment, baseline recipes, cavity removal rates and subsequent cryogenic cavity tests on niobium as well as copper cavities where available.

  7. Depression-Burnout Overlap in Physicians

    Science.gov (United States)

    Wurm, Walter; Vogel, Katrin; Holl, Anna; Ebner, Christoph; Bayer, Dietmar; Mörkl, Sabrina; Szilagyi, Istvan-Szilard; Hotter, Erich; Kapfhammer, Hans-Peter; Hofmann, Peter

    2016-01-01

    Background Whether burnout is a distinct phenomenon rather than a type of depression and whether it is a syndrome, limited to three “core” components (emotional exhaustion, depersonalization and low personal accomplishment) are subjects of current debate. We investigated the depression-burnout overlap, and the pertinence of these three components in a large, representative sample of physicians. Methods In a cross-sectional study, all Austrian physicians were invited to answer a questionnaire that included the Major Depression Inventory (MDI), the Hamburg Burnout Inventory (HBI), as well as demographic and job-related parameters. Of the 40093 physicians who received an invitation, a total of 6351 (15.8%) participated. The data of 5897 participants were suitable for analysis. Results Of the participants, 10.3% were affected by major depression. Our study results suggest that potentially 50.7% of the participants were affected by symptoms of burnout. Compared to physicians unaffected by burnout, the odds ratio of suffering from major depression was 2.99 (95% CI 2.21–4.06) for physicians with mild, 10.14 (95% CI 7.58–13.59) for physicians with moderate, 46.84 (95% CI 35.25–62.24) for physicians with severe burnout and 92.78 (95% CI 62.96–136.74) for the 3% of participants with the highest HBI_sum (sum score of all ten HBI components). The HBI components Emotional Exhaustion, Personal Accomplishment and Detachment (representing depersonalization) tend to correlate more highly with the main symptoms of major depression (sadness, lack of interest and lack of energy) than with each other. A combination of the HBI components Emotional Exhaustion, Helplessness, Inner Void and Tedium (adj.R2 = 0.92) explained more HBI_sum variance than the three “core” components (adj.R2 = 0.85) of burnout combined. Cronbach’s alpha for Emotional Exhaustion, Helplessness, Inner Void and Tedium combined was 0.90 compared to α = 0.54 for the combination of the three

  8. Depression-Burnout Overlap in Physicians.

    Directory of Open Access Journals (Sweden)

    Walter Wurm

    Full Text Available Whether burnout is a distinct phenomenon rather than a type of depression and whether it is a syndrome, limited to three "core" components (emotional exhaustion, depersonalization and low personal accomplishment are subjects of current debate. We investigated the depression-burnout overlap, and the pertinence of these three components in a large, representative sample of physicians.In a cross-sectional study, all Austrian physicians were invited to answer a questionnaire that included the Major Depression Inventory (MDI, the Hamburg Burnout Inventory (HBI, as well as demographic and job-related parameters. Of the 40093 physicians who received an invitation, a total of 6351 (15.8% participated. The data of 5897 participants were suitable for analysis.Of the participants, 10.3% were affected by major depression. Our study results suggest that potentially 50.7% of the participants were affected by symptoms of burnout. Compared to physicians unaffected by burnout, the odds ratio of suffering from major depression was 2.99 (95% CI 2.21-4.06 for physicians with mild, 10.14 (95% CI 7.58-13.59 for physicians with moderate, 46.84 (95% CI 35.25-62.24 for physicians with severe burnout and 92.78 (95% CI 62.96-136.74 for the 3% of participants with the highest HBI_sum (sum score of all ten HBI components. The HBI components Emotional Exhaustion, Personal Accomplishment and Detachment (representing depersonalization tend to correlate more highly with the main symptoms of major depression (sadness, lack of interest and lack of energy than with each other. A combination of the HBI components Emotional Exhaustion, Helplessness, Inner Void and Tedium (adj.R2 = 0.92 explained more HBI_sum variance than the three "core" components (adj.R2 = 0.85 of burnout combined. Cronbach's alpha for Emotional Exhaustion, Helplessness, Inner Void and Tedium combined was 0.90 compared to α = 0.54 for the combination of the three "core" components.This study demonstrates the

  9. Maximizing power to track Alzheimer's disease and MCI progression by LDA-based weighting of longitudinal ventricular surface features.

    Science.gov (United States)

    Gutman, Boris A; Hua, Xue; Rajagopalan, Priya; Chou, Yi-Yu; Wang, Yalin; Yanovsky, Igor; Toga, Arthur W; Jack, Clifford R; Weiner, Michael W; Thompson, Paul M

    2013-04-15

    We propose a new method to maximize biomarker efficiency for detecting anatomical change over time in serial MRI. Drug trials using neuroimaging become prohibitively costly if vast numbers of subjects must be assessed, so it is vital to develop efficient measures of brain change. A popular measure of efficiency is the minimal sample size (n80) needed to detect 25% change in a biomarker, with 95% confidence and 80% power. For multivariate measures of brain change, we can directly optimize n80 based on a Linear Discriminant Analysis (LDA). Here we use a supervised learning framework to optimize n80, offering two alternative solutions. With a new medial surface modeling method, we track 3D dynamic changes in the lateral ventricles in 2065 ADNI scans. We apply our LDA-based weighting to the results. Our best average n80-in two-fold nested cross-validation-is 104 MCI subjects (95% CI: [94,139]) for a 1-year drug trial, and 75AD subjects [64,102]. This compares favorably with other MRI analysis methods. The standard "statistical ROI" approach applied to the same ventricular surfaces requires 165 MCI or 94AD subjects. At 2 years, the best LDA measure needs only 67 MCI and 52AD subjects, versus 119 MCI and 80AD subjects for the stat-ROI method. Our surface-based measures are unbiased: they give no artifactual additive atrophy over three time points. Our results suggest that statistical weighting may boost efficiency of drug trials that use brain maps.

  10. Fiscal year 1976 progress report on a feasibility study evaluating the use of surface penetrators for planetary exploration

    Science.gov (United States)

    Blanchard, M. B.; Oberbeck, V. R.; Bunch, T. E.; Reynolds, R. T.; Canning, T. N.; Jackson, R. W.

    1976-01-01

    The feasibility of employing penetrators for exploring Mars was examined. Eight areas of interest for key scientific experiments were identified. These include: seismic activity, imaging, geochemistry, water measurement, heatflow, meteorology, magnetometry, and biochemistry. In seven of the eight potential experiment categories this year's progress included: conceptual design, instrument fabrication, instrument performance evaluation, and shock loading of important components. Most of the components survived deceleration testing with negligible performance changes. Components intended to be placed inside the penetrator forebody were tested up to 3,500 g and components intended to be placed on the afterbody were tested up to 21,000 g. A field test program was conducted using tentative Mars penetrator mission constraints. Drop tests were performed at two selected terrestrial analog sites to determine the range of penetration depths for anticipated common Martian materials. Minimum penetration occurred in basalt at Amboy, California. Three full-scale penetrators penetrated 0.4 to 0.9 m into the basalt after passing through 0.3 to 0.5 m of alluvial overburden. Maximum penetration occurred in unconsolidated sediments at McCook, Nebraska. Two full-scale penetrators penetrated 2.5 to 8.5 m of sediment. Impact occurred in two kinds of sediment: loess and layered clay. Deceleration g loads of nominally 2,000 for the forebody and 20,000 for the afterbody did not present serious design problems for potential experiments. Penetrators have successfully impacted into terrestrial analogs of the probable extremes of potential Martian sites.

  11. Progress on surface antigens of Toxoplasma gondii%弓形虫表面抗原研究进展

    Institute of Scientific and Technical Information of China (English)

    付婷霞; 仲维霞

    2009-01-01

    刚地弓形虫是一种广泛分布于人和哺乳动物组织细胞内的机会性致病原虫,可引起严重的人兽共患病.弓形虫抗原的研究对开发诊断制剂、疫苗以及从分子水平探讨弓形虫与宿主之间的相互关系具有重要意义,该文对近年来有关弓形虫抗原的研究进展作一综述.%Toxoplasma gondii is all obligate intracellular parasite that infects a wide range of hosts,in-cluding humans and domesticated animals throughout the wodd.The investigation of the antigens of Toxoplasma gondii is of great significance in developing diagnostic reagents,vaccines and studying on the relationship be-tween Toxoplasma gondii and its hosts.This review focused on the recent progress on the antigens of Toxoplas-ma gondii.

  12. Giant Cell Tumor of Bone: Documented Progression over 4 Years from Its Origin at the Metaphysis to the Articular Surface

    Directory of Open Access Journals (Sweden)

    Colin Burke

    2016-01-01

    Full Text Available The exact location of origin for giant cell tumors of bone (GCTB remains controversial, as lesions are not routinely imaged early but rather late when the tumor is large and clinically symptomatic. At the time of diagnosis, GCTB are classically described as lucent, eccentric lesions with nonsclerotic margins, located within the epiphysis to a greater extent than the metaphysis. Here we present a case of a biopsy proven GCTB initially incidentally seen on MRI as a small strictly metaphyseal lesion, which over the course of several years expanded across a closed physis to involve the epiphysis and abut the articular surface/subchondral bone plate.

  13. Geometric Quality Assessment of LIDAR Data Based on Swath Overlap

    Science.gov (United States)

    Sampath, A.; Heidemann, H. K.; Stensaas, G. L.

    2016-06-01

    This paper provides guidelines on quantifying the relative horizontal and vertical errors observed between conjugate features in the overlapping regions of lidar data. The quantification of these errors is important because their presence quantifies the geometric quality of the data. A data set can be said to have good geometric quality if measurements of identical features, regardless of their position or orientation, yield identical results. Good geometric quality indicates that the data are produced using sensor models that are working as they are mathematically designed, and data acquisition processes are not introducing any unforeseen distortion in the data. High geometric quality also leads to high geolocation accuracy of the data when the data acquisition process includes coupling the sensor with geopositioning systems. Current specifications (e.g. Heidemann 2014) do not provide adequate means to quantitatively measure these errors, even though they are required to be reported. Current accuracy measurement and reporting practices followed in the industry and as recommended by data specification documents also potentially underestimate the inter-swath errors, including the presence of systematic errors in lidar data. Hence they pose a risk to the user in terms of data acceptance (i.e. a higher potential for Type II error indicating risk of accepting potentially unsuitable data). For example, if the overlap area is too small or if the sampled locations are close to the center of overlap, or if the errors are sampled in flat regions when there are residual pitch errors in the data, the resultant Root Mean Square Differences (RMSD) can still be small. To avoid this, the following are suggested to be used as criteria for defining the inter-swath quality of data: a) Median Discrepancy Angle b) Mean and RMSD of Horizontal Errors using DQM measured on sloping surfaces c) RMSD for sampled locations from flat areas (defined as areas with less than 5 degrees of slope

  14. GEOMETRIC QUALITY ASSESSMENT OF LIDAR DATA BASED ON SWATH OVERLAP

    Directory of Open Access Journals (Sweden)

    A. Sampath

    2016-06-01

    Full Text Available This paper provides guidelines on quantifying the relative horizontal and vertical errors observed between conjugate features in the overlapping regions of lidar data. The quantification of these errors is important because their presence quantifies the geometric quality of the data. A data set can be said to have good geometric quality if measurements of identical features, regardless of their position or orientation, yield identical results. Good geometric quality indicates that the data are produced using sensor models that are working as they are mathematically designed, and data acquisition processes are not introducing any unforeseen distortion in the data. High geometric quality also leads to high geolocation accuracy of the data when the data acquisition process includes coupling the sensor with geopositioning systems. Current specifications (e.g. Heidemann 2014 do not provide adequate means to quantitatively measure these errors, even though they are required to be reported. Current accuracy measurement and reporting practices followed in the industry and as recommended by data specification documents also potentially underestimate the inter-swath errors, including the presence of systematic errors in lidar data. Hence they pose a risk to the user in terms of data acceptance (i.e. a higher potential for Type II error indicating risk of accepting potentially unsuitable data. For example, if the overlap area is too small or if the sampled locations are close to the center of overlap, or if the errors are sampled in flat regions when there are residual pitch errors in the data, the resultant Root Mean Square Differences (RMSD can still be small. To avoid this, the following are suggested to be used as criteria for defining the inter-swath quality of data: a Median Discrepancy Angle b Mean and RMSD of Horizontal Errors using DQM measured on sloping surfaces c RMSD for sampled locations from flat areas (defined as areas with less than 5

  15. Hybrid lattice Boltzmann method on overlapping grids.

    Science.gov (United States)

    Di Ilio, G; Chiappini, D; Ubertini, S; Bella, G; Succi, S

    2017-01-01

    In this work, a hybrid lattice Boltzmann method (HLBM) is proposed, where the standard lattice Boltzmann implementation based on the Bhatnagar-Gross-Krook (LBGK) approximation is combined together with an unstructured finite-volume lattice Boltzmann model. The method is constructed on an overlapping grid system, which allows the coexistence of a uniform lattice nodes spacing and a coordinate-free lattice structure. The natural adaptivity of the hybrid grid system makes the method particularly suitable to handle problems involving complex geometries. Moreover, the provided scheme ensures a high-accuracy solution near walls, given the capability of the unstructured submodel of achieving the desired level of refinement in a very flexible way. For these reasons, the HLBM represents a prospective tool for solving multiscale problems. The proposed method is here applied to the benchmark problem of a two-dimensional flow past a circular cylinder for a wide range of Reynolds numbers and its numerical performances are measured and compared with the standard LBGK ones.

  16. Overlapping Neural Endophenotypes in Addiction and Obesity

    Directory of Open Access Journals (Sweden)

    Andréanne Michaud

    2017-06-01

    Full Text Available Impulsivity refers to a tendency to act rapidly without full consideration of consequences. The trait is thought to result from the interaction between high arousal responses to potential rewards and poor self-control. Studies have suggested that impulsivity confers vulnerability to both addiction and obesity. However, results in this area are unclear, perhaps due to the high phenotypic complexity of addictions and obesity. Focusing on impulsivity, the aim of this review is to tackle the putative overlaps between addiction and obesity in four domains: (1 personality research, (2 neurocognitive tasks, (3 brain imaging, and (4 clinical evidence. We suggest that three impulsivity-related domains are particularly relevant for our understanding of similarities between addiction and obesity: lower self-control (high Disinhibition/low Conscientiousness, reward sensitivity (high Extraversion/Positive Emotionality, and negative affect (high Neuroticism/Negative Emotionality. Neurocognitive studies have shown that obesity and addiction are both associated with increased impulsive decision-making and attention bias in response to drug or food cues, respectively. Mirroring this, obesity and different forms of addiction seem to exhibit similar alterations in functional MRI brain activity in response to reward processing and during self-control tasks. Overall, our review provides an integrative approach to understand those facets of obesity that present similarities to addictive behaviors. In addition, we suggest that therapeutic interventions targeting inhibitory control may represent a promising approach for the prevention and/or treatment of obesity.

  17. Overlapping Neural Endophenotypes in Addiction and Obesity

    Science.gov (United States)

    Michaud, Andréanne; Vainik, Uku; Garcia-Garcia, Isabel; Dagher, Alain

    2017-01-01

    Impulsivity refers to a tendency to act rapidly without full consideration of consequences. The trait is thought to result from the interaction between high arousal responses to potential rewards and poor self-control. Studies have suggested that impulsivity confers vulnerability to both addiction and obesity. However, results in this area are unclear, perhaps due to the high phenotypic complexity of addictions and obesity. Focusing on impulsivity, the aim of this review is to tackle the putative overlaps between addiction and obesity in four domains: (1) personality research, (2) neurocognitive tasks, (3) brain imaging, and (4) clinical evidence. We suggest that three impulsivity-related domains are particularly relevant for our understanding of similarities between addiction and obesity: lower self-control (high Disinhibition/low Conscientiousness), reward sensitivity (high Extraversion/Positive Emotionality), and negative affect (high Neuroticism/Negative Emotionality). Neurocognitive studies have shown that obesity and addiction are both associated with increased impulsive decision-making and attention bias in response to drug or food cues, respectively. Mirroring this, obesity and different forms of addiction seem to exhibit similar alterations in functional MRI brain activity in response to reward processing and during self-control tasks. Overall, our review provides an integrative approach to understand those facets of obesity that present similarities to addictive behaviors. In addition, we suggest that therapeutic interventions targeting inhibitory control may represent a promising approach for the prevention and/or treatment of obesity. PMID:28659866

  18. Strange quark momentum fraction from overlap fermion

    CERN Document Server

    Sun, Mingyang; Liu, Keh-Fei; Gong, Ming

    2015-01-01

    We present a calculation of $\\langle x \\rangle_s$ for the strange quark in the nucleon. We also report the ratio of the strange $\\langle x \\rangle$ to that of $u/d$ in the disconnected insertion which will be useful in constraining the global fit of parton distribution functions at small $x$. We adopt overlap fermion action on $2 + 1$ flavor domain-wall fermion configurations on the $24^3 \\times 64$ lattice with a light sea quark mass which corresponds to $m_{\\pi}=330$ MeV. Smeared grid $Z_3$ sources are deployed to calculate the nucleon propagator with low-mode substitution. Even-odd grid sources and time-dilution technique with stochastic noises are used to calculate the high mode contribution to the quark loop. Low mode averaging (LMA) for the quark loop is applied to reduce the statistical error of the disconnected insertion calculation. We find the ratio $\\langle x \\rangle_s/\\langle x \\rangle_{u/d}^{\\mathrm{DI}}= 0.78(3)$ in this study.

  19. PSC, AIH and overlap syndrome in inflammatory bowel disease.

    Science.gov (United States)

    Trivedi, P J; Chapman, R W

    2012-10-01

    Primary sclerosing cholangitis (PSC) is a progressive, cholestatic disorder characterised by chronic inflammation and stricture formation of the biliary tree. Symptoms include pruritus, fatigue and in advanced cases ascending cholangitis, cirrhosis and end-stage hepatic failure. Patients are at an increased risk of malignancy arising from the bile ducts, gallbladder, liver and colon. The majority (>80%) of Northern European patients with PSC also have inflammatory bowel disease (IBD), usually ulcerative colitis (UC). IBD commonly presents before the onset of PSC, although the opposite can occur and the onset of both conditions can be separated by many years. The colitis associated with PSC is characteristically mild although frequently involves the whole colon. Despite the majority of patients having relatively inactive colonic disease, paradoxically the risk of colorectal malignancy is substantially increased. Patients may also develop dominant, stenotic lesions of the biliary tree which may be difficult to differentiate from cholangiocarcinoma and the coexistence of IBD may influence the development of this complication. Ursodeoxycholic acid may offer a chemoprotective effect against colorectal malignancy and improve liver biochemical indices. Evidence of any beneficial effect on histological progression of hepatobiliary disease is less clear. High doses (∼25-30 mg/kg/d) may be harmful and should be avoided. Autoimmune hepatitis (AIH) is less common in patients with IBD than PSC, however, an association has been observed. A small subgroup may have an overlap syndrome between AIH and PSC and management should be individualised dependant on liver histology, serum immunoglobulin levels, autoantibodies, degree of biochemical cholestasis and cholangiography.

  20. Effect of fracture surface roughness on shear crack growth. Progress report, August 1, 1991--May 31, 1992

    Energy Technology Data Exchange (ETDEWEB)

    Gross, T.S.; Watt, D.W. [New Hampshire Univ., Durham, NH (United States). Dept. of Mechanical Engineering; Mendelsohn, D.A. [Ohio State Univ., Columbus, OH (United States). Dept. of Engineering Mechanics

    1992-12-01

    A model of fracture surface interference for Mode I fatigue crack profiles was developed and evaluated. Force required to open the crack faces is estimated from point contact expressions for Mode I stress intensity factor. Force transfer across contacting asperities is estimated and used to calculate Mode II resistance stress intensity factor (applied factor is sum of effective and resistance factors). Electro-optic holographic interferometry was used to measure 3-D displacement field around a Mode I fatigue pre-crack in Al loaded in Mode II shear. Induced Mode I crack face displacements were greater than Mode II displacements. Plane stress shear lip caused displacement normal to surface as the crack faces are displaced. Algorithms are being developed to track the displacements associated with the original coordinate system in the camera. A 2-D boundary element method code for mixed mode I and II loading of a rough crack (sawtooth asperity model) has been completed. Addition of small-scale crack tip yielding and a wear model are completed and underway, respectively.

  1. Overlapping Spreading Centers: Implications from Crack Growth Simulation by the Displacement Discontinuity Method

    Science.gov (United States)

    Sempere, Jean-Christophe; MacDonald, Ken C.

    1986-02-01

    Overlapping spreading centers (OSC's) are a fundamental aspect of accretionary processes at intermediate and fast-spreading centers and typically occur at deep points along the axial depth profile. They have a characteristic geometry consisting of two en echelon overlapping, curving ridges separated by an elongated depression. The length to width ratio of this overlap basin is typically 3∶1. We have been successful in reproducing the overlapping spreading center geometry by modelling the growth of two initially parallel elastic cracks of given length and offset in a tensile stress field at infinity. A boundary element displacement discontinuity method was used to solve this problem. Our calculated results are compared with seafloor observations in terms of the size and shape of the overlap region. For small OSC's, there is a very good agreement between calculations and observations but, for large ones, the overlap basin tends to be longer than our predicted results indicate. This suggests that the assumptions made in the model (i.e., perfectly elastic, isotropic and homogeneous medium) are perhaps valid for the brittle lid above the magma chamber that underlies OSC's with small offsets (OSC's with large offsets. Our modelling shows that the initial interaction of closely spaced surface ruptures along spreading centers is to deflect away from one another as they approach. The deflection will be the greatest for small misalignments of the fracture systems, thus even minor misalignments of the spreading centers may result in the development of OSC's. Where the misalignment is less than the width of the cracking front, the fracture systems may meet head-on creating a saddle point along the axial depth profile. Our results support the hypothesis suggested by Macdonald et al. [1984] in which overlapping spreading centers develop where two magmatic pulses migrate toward each other along the strike of the spreading center following fracture systems and magmatic conduits

  2. Towards reconstruction of overlapping fingerprints using plasma spectroscopy

    Science.gov (United States)

    Yang, Jun-Ho; Choi, Soo-Jin; Yoh, Jack J.

    2017-08-01

    Chemical analysis is commonly used in the field of forensic science where the precise discrimination of primary evidence is of significant importance. Laser-Induced Breakdown Spectroscopy (LIBS) exceeds other spectroscopic methods in terms of the time required for pre- and post-sample preparation, the insensitivity to sample phase state be it solid, liquid, or gas, and the detection of two-dimensional spectral mapping from real time point measurements. In this research, fingerprint samples on various surface materials are considered in the chemical detection and reconstruction of fingerprints using the two-dimensional LIBS technique. Strong and distinct intensities of specific wavelengths represent visible ink, natural secretion of sweat, and contaminants from the environment, all of which can be present in latent fingerprints. The particular aim of the work presented here is to enhance the precision of the two-dimensional recreation of the fingerprints present on metal, plastic, and artificially prepared soil surface using LIBS with principal component analysis. By applying a distinct wavelength discrimination for two overlapping fingerprint samples, separation into two non-identical chemical fingerprints was successfully performed.

  3. Overlap and distinctiveness of psychological risk factors in patients with ischemic heart disease and chronic heart failure

    DEFF Research Database (Denmark)

    Pelle, Aline J; Denollet, Johan; Zwisler, Ann-Dorthe

    2009-01-01

    Growing evidence supports the importance of psychological factors in the etiology and progression of cardiovascular disease (CVD). However, this research has been criticized due to overlap between psychological constructs. We examined whether psychological questionnaires frequently used...... in cardiovascular research assess distinct constructs in a mixed group of ischemic heart disease (IHD) and chronic heart failure (CHF) patients....

  4. On the interpretation of wave function overlaps in quantum dots

    DEFF Research Database (Denmark)

    Stobbe, Søren; Hvam, Jørn Märcher; Lodahl, Peter

    2011-01-01

    that the electron and the hole are located at the same point or region in space, i.e., they must coincide spatially to recombine. Here, we show that this interpretation is not correct even loosely speaking. By general mathematical considerations we compare the envelope wave function overlap, the exchange overlap......The spontaneous emission rate of excitons strongly confined in quantum dots (QDs) is proportional to the overlap integral of electron and hole envelope wave functions. A common and intuitive interpretation of this result is that the spontaneous emission rate is proportional to the probability...... compare our qualitative predictions with recent measurements of the wave function overlap and find good agreement....

  5. Do Neutrino Wave Functions Overlap and Does it Matter?

    CERN Document Server

    Li, Cheng-Hsien

    2016-01-01

    Studies of neutrinos commonly ignore anti-symmetrization of their wave functions. This implicitly assumes that either spatial wave functions for neutrinos with approximately the same momentum do not overlap or their overlapping has no measurable consequences. We examine these assumptions by considering the evolution of three-dimensional neutrino wave packets (WPs). We find that it is perfectly adequate to treat accelerator and reactor neutrinos as separate WPs for typical experimental setup. While solar and supernova neutrinos correspond to overlapping WPs, they can be treated effectively as non-overlapping for analyses of their detection.

  6. 镁合金的应用及其表面处理研究进展%Application and Surface Treatment Research Progress of Magnesium Alloys

    Institute of Scientific and Technical Information of China (English)

    慕伟意; 李争显; 杜继红; 奚正平

    2011-01-01

    Magnesium (Mg) alloys are promising materials for a number of applications due to their combination of low density and lots of excellent properties, however, the relatively high corrosion susceptibility and poor wear resistance of Mg alloys prevent their widespread use in many fields, it is necessary to utilize suitable surface treatment to promote their properties. The application and surface treatment research progress of Mg alloys are described. Up to date,Mg alloys are being increasingly applied to various industries like auto, electron, aviation and spaceflight, etc. , a good number of surface modification procedures such as chemistry treatment, anode oxidation, micro-arc oxidation (MAO),etc. have been developed and used with a reasonable degree of success in different applications. The progress of the MAO treatment on Mg alloys are emphasized to be introduced, the development trend of the MAO treatment on Mg alloys in future is analysed basing on the author's research work about the MAO treatment on Mg alloys; In the last part of the paper, the prospect of surface treatment research and development of Mg alloys in future is presented.%镁合金质轻,具有许多优良的性能,应用日益受到关注,但耐磨、耐蚀性差却制约着其广泛应用,需进行合适的表面处理以提高防护性能.综述了镁合金的主要应用及其表面处理研究的进展.目前,镁合金已广泛应用于汽车、电子、航空、航天等领域,所采取的表面处理方法主要有化学处理、阳极氧化、金属涂层、有机涂层、微孤氧化等,重点介绍了镁合金微弧氧化的研究进展,并基于在这方面所做的研究工作分析了今后镁合金微弧氧化研究的发展趋势.最后,提出了今后镁合金表面处理研究的发展方向.

  7. Changes in surface electromyography signals and kinetics associated with progression of fatigue at two speeds during wheelchair propulsion

    Directory of Open Access Journals (Sweden)

    Liping Qi, PhD

    2012-02-01

    Full Text Available The purpose of this study was to determine whether muscle balance is influenced by fatigue in a recordable way, toward creating novel defensive activity strategies for manual wheelchair users (MWUs. Wheelchair propulsion to a point of mild fatigue, level 15 on the Rating of Perceived Exertion scale, was investigated at two different speeds. Surface electromyographic (EMG activity of 7 muscles was recorded on 14 nondisabled participants. Kinetic variables were measured using a SmartWheel. No significant effect was found of percentage endurance time on kinetic variables for the two propulsion speeds. Fatigue-related changes in the EMG spectra were identified as an increase of EMG intensity and a decrease of mean power frequency as a function of percent endurance time for the tested muscles under both fast and slow speed conditions. The greater increases in activity for propulsive muscles compared with recovery muscles during fast speed wheelchair propulsion indicated muscle imbalance associated with fatiguing wheelchair propulsion. This study shows how kinetic and EMG information might be used as feedback to MWUs to ensure that they conduct activity in ways that do not precipitate injury.

  8. UXO Discrimination in Cases with Overlapping Signatures

    Science.gov (United States)

    2007-03-07

    the governing algebraic equations by applying (11) at, for example, a point on S1, one includes in scH the scattered fields from all objects...field divergence equation in a thin layer just inside the object’s surface; 2. Express derivatives of vectorially tangential quantities in terms

  9. Overlapping and non-overlapping functions of condensins I and II in neural stem cell divisions.

    Directory of Open Access Journals (Sweden)

    Kenji Nishide

    2014-12-01

    Full Text Available During development of the cerebral cortex, neural stem cells (NSCs divide symmetrically to proliferate and asymmetrically to generate neurons. Although faithful segregation of mitotic chromosomes is critical for NSC divisions, its fundamental mechanism remains unclear. A class of evolutionarily conserved protein complexes, known as condensins, is thought to be central to chromosome assembly and segregation among eukaryotes. Here we report the first comprehensive genetic study of mammalian condensins, demonstrating that two different types of condensin complexes (condensins I and II are both essential for NSC divisions and survival in mice. Simultaneous depletion of both condensins leads to severe defects in chromosome assembly and segregation, which in turn cause DNA damage and trigger p53-induced apoptosis. Individual depletions of condensins I and II lead to slower loss of NSCs compared to simultaneous depletion, but they display distinct mitotic defects: chromosome missegregation was observed more prominently in NSCs depleted of condensin II, whereas mitotic delays were detectable only in condensin I-depleted NSCs. Remarkably, NSCs depleted of condensin II display hyperclustering of pericentric heterochromatin and nucleoli, indicating that condensin II, but not condensin I, plays a critical role in establishing interphase nuclear architecture. Intriguingly, these defects are taken over to postmitotic neurons. Our results demonstrate that condensins I and II have overlapping and non-overlapping functions in NSCs, and also provide evolutionary insight into intricate balancing acts of the two condensin complexes.

  10. Simple Evaluation of Chiral Jacobian with Overlap Dirac Operator

    CERN Document Server

    Suzuki, H

    1999-01-01

    The chiral Jacobian, which is defined with Neuberger's overlap Dirac operator of lattice fermion, is explicitly evaluated in the continuum limit without expanding it in the gauge coupling constant. Our calculational scheme is simple and straightforward. We determine a coefficient of the chiral anomaly for general value of the bare mass parameter and the Wilson parameter of the overlap Dirac operator.

  11. Influence of line isolation overlappings on formation of lightning overvoltages

    Directory of Open Access Journals (Sweden)

    Antropov I. M.

    2015-12-01

    Full Text Available The model of substation protection against lightning waves with considered multiple overlappings of line isolation has been presented. Influence of multiple overlapping of isolation on line support on formation of lightning overvoltages has been shown. Ambiguity of determination of lightning current dangerous parameters at the fixed length of its front has been revealed

  12. An Exposition of Fischer's Model of Overlapping Contracts.

    Science.gov (United States)

    Fields, T. Windsor; Hart, William R.

    1992-01-01

    Suggests how the classic model of overlapping contracts can be incorporated into the contract wage model of aggregate supply. Illustrates dynamics of macroeconomic adjustment following a shock to aggregate demand. Concludes that overlapping contracts do not prolong the adjustment process; rather, the longest remaining contract determines the time…

  13. Nested Genetic Algorithm for Resolving Overlapped Spectral Bands

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    A nested genetic algorithm, including genetic parameter level and genetic implemented level for peak parameters, was proposed and applied for resolving overlapped spectral bands. By the genetic parameter level, parameters of genetic algorithm were optimized; moreover, the number of overlapped peaks was determined simultaneously. Then parameters of individual peaks were computed with the genetic implemented level.

  14. Overlaps of Partial Neel States and Bethe States

    CERN Document Server

    Foda, O

    2015-01-01

    Partial Neel states are generalizations of the ordinary Neel (classical anti-ferromagnet) state that can have arbitrary integer spin. We study overlaps of these states with Bethe states. We first identify this overlap with a partial version of reflecting-boundary domain-wall partition function, and then derive various determinant representations for off-shell and on-shell Bethe states.

  15. Shake for Sigma, Pray for Pi: Classroom Orbital Overlap Analogies

    Science.gov (United States)

    Dicks, Andrew P.

    2011-01-01

    An introductory organic classroom demonstration is discussed where analogies are made between common societal hand contact and covalent bond formation. A handshake signifies creation of a [sigma] bond ("head-on" orbital overlap), whereas the action of praying illustrates "sideways" overlap and generation of a [pi] bond. The nature of orbital and…

  16. Direct and indirect effects in the regulation of overlapping promoters

    DEFF Research Database (Denmark)

    Bendtsen, Kristian Moss; Erdossy, Janos; Csiszovski, Zsolt;

    2011-01-01

    promoter database we found that ~14% of the identified 'forward' promoters overlap with a promoter oriented in the opposite direction. In this article we combine a mathematical model with experimental analysis of synthetic regulatory regions to investigate interference of overlapping promoters. We find...

  17. Distribution and content of dust in overlapping galaxy systems

    CERN Document Server

    White, R E; Conselice, C J; White, Raymond E; Keel, William C; Conselice, Christopher J

    1996-01-01

    Partially overlapping galaxies are used to directly determine the effective absorption in spiral galaxy disks. The non-overlapping parts of the galaxies and symmetry considerations are used to reconstruct, via differential photometry, how much background galaxy light is lost in passing through the foreground disks.

  18. 弱磁性铁矿物表面强磁化研究进展%Research Progress on the Surface Strong Magnetization of Weakly Magnetic Iron Minerals

    Institute of Scientific and Technical Information of China (English)

    罗德强; 刘建

    2016-01-01

    随着易处理铁矿资源的开发利用,弱磁性铁矿所占比重越来越大,并且其矿石类型复杂,这类矿石往往生产成本高、生产过程环境污染严重导致难以有效开发利用,而磁铁矿物表面强磁化技术则成为解决这一问题的重要途径。概述了近年来弱磁性铁矿物表面强磁化研究情况,对弱磁性铁矿物的碱浸磁化、电化学处理磁化、磁种磁化、生物磁化等工艺的研究成果分别进行了详细的介绍,并提出了今后的发展方向。%With highly exploitation and utilization of easily separable iron ores , the proportion of weakly magnetic iron ore containing arsenic is growing larger , which belongs to complex ore proper-ty.Because of high cost and serious environmental pollution of mineral processing , lots of weakly magnetic iron resources can not be effectively utilized .surface strong magnetization of weakly mag-netic iron minerals becomes a particular technology to solve the problem .This article aims to sum-marize research progress on surface strong magnetization of weakly magnetic iron minerals in recent years.Numerous magnetization technologies of weakly magnetic iron minerals , such as alkali leac-hing magnetization , electrochemical treatment magnetization , magnetic seeds magnetization and bi-ological magnetization , were introduced in detail .Finally, the development directions of the surface strong magnetization of weakly magnetic iron minerals in future are proposed based on this review .

  19. Compressed Sensing Inspired Image Reconstruction from Overlapped Projections

    Directory of Open Access Journals (Sweden)

    Lin Yang

    2010-01-01

    Full Text Available The key idea discussed in this paper is to reconstruct an image from overlapped projections so that the data acquisition process can be shortened while the image quality remains essentially uncompromised. To perform image reconstruction from overlapped projections, the conventional reconstruction approach (e.g., filtered backprojection (FBP algorithms cannot be directly used because of two problems. First, overlapped projections represent an imaging system in terms of summed exponentials, which cannot be transformed into a linear form. Second, the overlapped measurement carries less information than the traditional line integrals. To meet these challenges, we propose a compressive sensing-(CS- based iterative algorithm for reconstruction from overlapped data. This algorithm starts with a good initial guess, relies on adaptive linearization, and minimizes the total variation (TV. Then, we demonstrated the feasibility of this algorithm in numerical tests.

  20. Segmentation of Overlapping Shapes using Test Ray Intersections

    DEFF Research Database (Denmark)

    Rasmusson, Allan

    be a major task, but in bioimaging and tissue quantification it is often complicated further by the need for segmenting images of overlapping particles, for instance neurons. One approach to segmenting overlapping particles is to oversegment the image into many small regions which are then combined...... into the correct shapes in a postprocessing step. The postprocessing step is unfortunately often both difficult and computationally expensive. Another approach is to incorporate descriptions of the overlapping shapes into a segmentation algorithm which normally only segments the union of all particle profiles....... This may, however, quickly lead to the implementation of complex descriptions of any possible configuration the overlapping shapes may appear in. Presented here is a new approach to segment overlapping shapes which utilizes information gained from probing the image with test rays. Test rays intersections...

  1. Compression of flow can reveal overlapping modular organization in networks

    CERN Document Server

    Esquivel, Alcides Viamontes

    2011-01-01

    To better understand the overlapping modular organization of large networks with respect to flow, here we introduce the map equation for overlapping modules. In this information-theoretic framework, we use the correspondence between compression and regularity detection. The generalized map equation measures how well we can compress a description of flow in the network when we partition it into modules with possible overlaps. When we minimize the generalized map equation over overlapping network partitions, we detect modules that capture flow and determine which nodes at the boundaries between modules should be classified in multiple modules and to what degree. With a novel greedy search algorithm, we find that some networks, for example, the neural network of C. Elegans, are best described by modules dominated by hard boundaries, but that others, for example, the sparse road network of California, have a highly overlapping modular organization. To compare our approach with other clustering algorithms, we sugg...

  2. Stereo transparency in ambiguous stereograms generated by overlapping two identical dot patterns.

    Science.gov (United States)

    Watanabe, Osamu

    2009-11-30

    In binocular vision, observers can perceive transparent surfaces by fusing a stereogram composed of two overlapping patterns with different disparities. When dot patterns of two surfaces are identical, the stereogram has potential matches leading to both transparency and non-transparency (or unitary surface) perceptions. However, these two matching candidates are exclusive if the uniqueness assumption holds. This stereogram can be regarded as a random-dot version of the double-nail illusion and a stereo version of the locally paired-dot stimulus that was used to investigate the neural mechanism for motion transparency. Which surface is perceived in this ambiguous stereogram would reflect the property of the transparency detection mechanism in human stereopsis. Here we perform a parametric study to examine the perceptual property in this ambiguous stereogram. The result showed that the ability in transparency detection from this stereogram is determined by the contrast reversal ratio between overlapping patterns within small regions the width of which was about 0.4 deg. The width was similar to the receptive field sizes of neurons in striate cortex. The result suggests that the contrast reversal between two identical patterns would modulate activities of binocular neurons, and this modification gives a crucial effect on the neural representation for overlapping disparities.

  3. Recent Progresses in Incorporating Human Land-Water Management into Global Land Surface Models Toward Their Integration into Earth System Models

    Science.gov (United States)

    Pokhrel, Yadu N.; Hanasaki, Naota; Wada, Yoshihide; Kim, Hyungjun

    2016-01-01

    The global water cycle has been profoundly affected by human land-water management. As the changes in the water cycle on land can affect the functioning of a wide range of biophysical and biogeochemical processes of the Earth system, it is essential to represent human land-water management in Earth system models (ESMs). During the recent past, noteworthy progress has been made in large-scale modeling of human impacts on the water cycle but sufficient advancements have not yet been made in integrating the newly developed schemes into ESMs. This study reviews the progresses made in incorporating human factors in large-scale hydrological models and their integration into ESMs. The study focuses primarily on the recent advancements and existing challenges in incorporating human impacts in global land surface models (LSMs) as a way forward to the development of ESMs with humans as integral components, but a brief review of global hydrological models (GHMs) is also provided. The study begins with the general overview of human impacts on the water cycle. Then, the algorithms currently employed to represent irrigation, reservoir operation, and groundwater pumping are discussed. Next, methodological deficiencies in current modeling approaches and existing challenges are identified. Furthermore, light is shed on the sources of uncertainties associated with model parameterizations, grid resolution, and datasets used for forcing and validation. Finally, representing human land-water management in LSMs is highlighted as an important research direction toward developing integrated models using ESM frameworks for the holistic study of human-water interactions within the Earths system.

  4. An extension to artifact-free projection overlaps

    Energy Technology Data Exchange (ETDEWEB)

    Lin, Jianyu, E-mail: jianyulin@hotmail.com [Department of Electrical and Computer Engineering, Curtin University, GPO Box U1987, Perth, Western Australia 6845 (Australia)

    2015-05-15

    Purpose: In multipinhole single photon emission computed tomography, the overlapping of projections has been used to increase sensitivity. Avoiding artifacts in the reconstructed image associated with projection overlaps (multiplexing) is a critical issue. In our previous report, two types of artifact-free projection overlaps, i.e., projection overlaps that do not lead to artifacts in the reconstructed image, were formally defined and proved, and were validated via simulations. In this work, a new proposition is introduced to extend the previously defined type-II artifact-free projection overlaps so that a broader range of artifact-free overlaps is accommodated. One practical purpose of the new extension is to design a baffle window multipinhole system with artifact-free projection overlaps. Methods: First, the extended type-II artifact-free overlap was theoretically defined and proved. The new proposition accommodates the situation where the extended type-II artifact-free projection overlaps can be produced with incorrectly reconstructed portions in the reconstructed image. Next, to validate the theory, the extended-type-II artifact-free overlaps were employed in designing the multiplexing multipinhole spiral orbit imaging systems with a baffle window. Numerical validations were performed via simulations, where the corresponding 1-pinhole nonmultiplexing reconstruction results were used as the benchmark for artifact-free reconstructions. The mean square error (MSE) was the metric used for comparisons of noise-free reconstructed images. Noisy reconstructions were also performed as part of the validations. Results: Simulation results show that for noise-free reconstructions, the MSEs of the reconstructed images of the artifact-free multiplexing systems are very similar to those of the corresponding 1-pinhole systems. No artifacts were observed in the reconstructed images. Therefore, the testing results for artifact-free multiplexing systems designed using the

  5. Combining Density and Overlap (CoDO): A New Method for Assessing the Significance of Overlap Among Subgraphs

    CERN Document Server

    Magner, Abram; Grama, Ananth

    2016-01-01

    Algorithms for detecting clusters (including overlapping clusters) in graphs have received significant attention in the research community. A closely related important aspect of the problem -- quantification of statistical significance of overlap of clusters, remains relatively unexplored. This paper presents the first theoretical and practical results on quantifying statistically significant interactions between clusters in networks. Such problems commonly arise in diverse applications, ranging from social network analysis to systems biology. The paper addresses the problem of quantifying the statistical significance of the observed overlap of the two clusters in an Erd\\H{o}s-R\\'enyi graph model. The analytical framework presented in the paper assigns a $p$-value to overlapping subgraphs by combining information about both the sizes of the subgraphs and their edge densities in comparison to the corresponding values for their overlapping component. This $p$-value is demonstrated to have excellent discriminati...

  6. Warming effect of dust aerosols modulated by overlapping clouds below

    Science.gov (United States)

    Xu, Hui; Guo, Jianping; Wang, Yuan; Zhao, Chuanfeng; Zhang, Zhibo; Min, Min; Miao, Yucong; Liu, Huan; He, Jing; Zhou, Shunwu; Zhai, Panmao

    2017-10-01

    Due to the substantial warming effect of dust aerosols overlying clouds and its poor representation in climate models, it is imperative to accurately quantify the direct radiative forcing (DRF) of above-cloud dust aerosols. When absorbing aerosol layers are located above clouds, the warming effect of aerosols strongly depends on the cloud macro- and micro-physical properties underneath, such as cloud optical depth and cloud fraction at visible wavelength. A larger aerosol-cloud overlap is believed to cause a larger warming effect of absorbing aerosols, but the influence of overlapping cloud fraction and cloud optical depth remains to be explored. In this study, the impact of overlapping cloud properties on the shortwave all-sky DRF due to springtime above-cloud dust aerosols is quantified over northern Pacific Ocean based on 10-year satellite measurements. On average, the DRF is roughly 0.62 Wm-2. Furthermore, the warming effect of dust aerosols linearly increases with both overlapping cloud fraction and cloud optical depth. An increase of 1% in overlapping cloud fraction will amplify this warming effect by 1.11 Wm-2τ-1. For the springtime northern Pacific Ocean, top-of-atmosphere cooling by dust aerosols turns into warming when overlapping cloud fraction is beyond 0.20. The variation of critical cloud optical depth beyond which dust aerosols switch from exerting a net cooling to a net warming effect depends on the concurrent overlapping cloud fraction. When the overlapping cloud coverage range increases from 0.2 to -0.4 to 0.6-0.8, the corresponding critical cloud optical depth reduces from 6.92 to 1.16. Our results demonstrate the importance of overlapping cloud properties for determining the springtime warming effect of dust aerosols.

  7. Research Progress in Anti-frosting Performance of Super-hydrophobic Surfaces%超疏水表面抑制结霜研究进展

    Institute of Scientific and Technical Information of China (English)

    陈小娇; 武卫东; 汪德龙

    2015-01-01

    Super-hydrophobic surfaces are widely used in manufacturing, owning to its high apparent contact angle and low sliding angle. This article summarized the latest international and domestic research progresses in the anti-frosting performance of super-hydrophobic surfaces and introduced the process characteristics of condensation, icing and frost depositing processes as well as the influence of super-hydrophobicity on the frosting process. A large body of evidence indicated that the time needed for con-densing and frosting was extended with thinner frost layer, fluffier and weaker structure, which could be easily removed by external force. However, some super-hydrophobic surfaces suffered from loss of super-hydrophobicity during condensing, which limited the potential of super-hydrophobic surfaces as anti-frosting materials. Super-hydrophobic surfaces with nano-structures solve the afore-mentioned weakness, some of them show excellent performances owning to jumping of condensate on those surfaces. Finally, the future development of super-hydrophobic surfaces was prospected.%超疏水表面以其超高的表观接触角和很小的滚动角在工业中获得广泛的应用。综述了近期国内外超疏水表面在抑霜方面的研究新进展,归纳了超疏水表面的冷凝、结冰和落霜过程的过程特点和疏水性对结霜过程的影响。超疏水表面能显著延迟冷凝发生和开始结霜的时间,降低霜层的厚度。与普通表面相比,超疏水表面的霜层结构更为蓬松脆弱,可在外力作用下轻松去除,表现出较好的抑霜性能。由于部分超疏水表面在冷凝阶段丧失疏水性从而丧失抑霜性能,大大地限制了超疏水表面在抑制结霜方面的潜力。纳米结构超疏水表面较好地解决了上述问题,一部分纳米表面由于冷凝液滴的弹跳现象而表现出极佳的抑霜性能。最后,对超疏水表面研究的发展进行了展望。

  8. A Guide to Using STITCHER for Overlapping Assembly PCR Applications.

    Science.gov (United States)

    O'Halloran, Damien M

    2017-01-01

    Overlapping PCR is commonly used in many molecular applications that include stitching PCR fragments together, generating fluorescent transcriptional and translational fusions, inserting mutations, making deletions, and PCR cloning. Overlapping PCR is also used for genotyping and in detection experiments using techniques such as loop-mediated isothermal amplification (LAMP). STITCHER is a web tool providing a central resource for researchers conducting all types of overlapping assembly PCR experiments with an intuitive interface for automated primer design that's fast, easy to use, and freely available online.

  9. Overlap distribution of the three-dimensional Ising model.

    Science.gov (United States)

    Berg, Bernd A; Billoire, Alain; Janke, Wolfhard

    2002-10-01

    We study the Parisi overlap probability density P(L)(q) for the three-dimensional Ising ferromagnet by means of Monte Carlo (MC) simulations. At the critical point, P(L)(q) is peaked around q=0 in contrast with the double peaked magnetic probability density. We give particular attention to the tails of the overlap distribution at the critical point, which we control over up to 500 orders of magnitude by using the multioverlap MC algorithm. Below the critical temperature, interface tension estimates from the overlap probability density are given and their approach to the infinite volume limit appears to be smoother than for estimates from the magnetization.

  10. Computation of overlap integrals over STOs with mathematica

    Science.gov (United States)

    Yükçü, S. A.; Yükçü, N.

    2017-02-01

    Overlap integrals which encountered in molecular structure calculations are the most basic of molecular integrals. Also, other molecular integrals can be expressed in terms of these integrals. Overlap integrals can be calculated by using Slater Type Orbitals (STOs). In this work, we develop algorithms for two-center overlap integrals which are calculated over the STOs in ellipsoidal coordinates and some auxiliary functions by S. M. Mekelleche's group. During the computation of this paper, Mathematica programming language has been used to produce algorithms. Numerical results for some quantum numbers are presented in the tables. Finally, our numerical results and others are compared, then some details of evaluation method are discussed.

  11. Monopolar Radiofrequency Ablation for Medium-sized Hepatocellular Carcinoma: Preliminary Experience with Single-Electrode Overlapping Ablation and Multiple-Electrode Switching System

    Directory of Open Access Journals (Sweden)

    Shen-Yung Wang

    2015-03-01

    Conclusions: Medium-sized hepatocellular carcinoma can be effectively ablated with monopolar radiofrequency ablation by either single-electrode overlapping ablation or a multiple-electrode switching system. Regarding mid-term treatment responses, both RFA approaches can achieve similar treatment effectiveness, local tumor progression rate, and survival probabilities. Multiple-electrode switching RFA can treat larger medium-sized HCC with comparable mid-term efficacy as smaller medium-sized HCC treated with single-electrode overlapping RFA.

  12. STUDIES ON THE PERMEABILITY OF PVC /EBBA OVERLAPPED ULTRATHIN COMPOSITE MEMBRANES MODIFIED BY PLASMA- POLYMERIZATION WITH FLUOROCARBON MONOMERS

    Institute of Scientific and Technical Information of China (English)

    FU Xiucheng; JIN Xigao; Tisato KAJIYAMA

    1989-01-01

    The PVC/EBBA ultrathin composite membranes with thickness of about 100 nm were prepared by spreading the solution on water surface. The overlapped composite membrane showed a characteristic aggregation structure in which the polymer matrix exists as a three-dimensional spongy network and the liquid crystal domains were observedThe surface modification for the overlapped membranes was carried out by means of plasma-polymerization with the monomers of fluorocarbon compounds. Both Arrhenius plots of permeability coefficients for oxygen (-Po2) in the membrane samples before and after modification showed significant increase in the vicinity of the TKN of EBBA.

  13. Seven new ovine progressive pneumonia virus (OPPV) field isolates from Dubois Idaho sheep comprise part of OPPV clade II based on surface envelope glycoprotein (SU) sequences.

    Science.gov (United States)

    Herrmann, Lynn M; Hötzel, Isidro; Cheevers, William P; On Top, Kathy Pretty; Lewis, Gregory S; Knowles, Donald P

    2004-06-15

    Seven new ovine progressive pneumonia virus (OPPV) field isolates were derived from colostrum and milk of 10 naturally OPPV-infected sheep from the US Sheep Experiment Station in Dubois, Idaho, USA. Sixteen sequences of the surface envelope glycoprotein (SU) from these seven Dubois OPPV field isolates and SU sequence from OPPV WLC1 were obtained, aligned with published SRLV SU sequences, and analyzed using phylogenetic analysis using parsimony (PAUP). Percent nucleotide identity in SU was greater than 95.8% among clones from individual Dubois OPPVs and ranged from 85.5 to 93.8% between different Dubois OPPV clones. SU sequences from Dubois OPPVs and WLC1 OPPV had significantly higher percent nucleotide identity to SU sequences from the North American OPPVs (85/34 and S93) than caprine-arthritis encephalitis virus (CAEVs) or MVVs. PAUP analysis also showed that SU sequences from the Dubois OPPVs and OPPV WLC1 grouped with other North American OPPVs (85/34 and S93) with a bootstrap value of 100 and formed one OPPV clade II group. In addition, Dubois and WLC1 SU amino acid sequences had significantly higher identity to SU sequences from North American OPPVs than CAEV or MVV. These data indicate that the seven new Dubois OPPV field isolates along with WLC1 OPPV are part of the OPPV clade II and are distinct from CAEVs and MVVs.

  14. Comparison of Placido disc and Scheimpflug image-derived topography-guided excimer laser surface normalization combined with higher fluence CXL: the Athens Protocol, in progressive keratoconus

    Directory of Open Access Journals (Sweden)

    Kanellopoulos AJ

    2013-07-01

    decreased to -18.35% and the index of height decentration to -39.03%. These reductions indicate that the corneal surface became less irregular (index of surface variance and the “cone” flatter and more central (index of height decentration postoperatively.Conclusion: Of the two sources of primary corneal data, the Scheimpflug rotating camera (Oculyzer™ for topography-guided normalization treatment with the WaveLight excimer laser platform appeared to provide more statistically significant improvement than the Placido disc topographer (Topolyzer™. Overall, the Athens protocol, aiming both to halt progression of keratoconic ectasia and to improve corneal topometry and visual performance, produced safe and satisfactory refractive, keratometric, and topometric results. The observed changes in visual acuity, along with keratometric flattening and topometric improvement, are suggestive of overall postoperative improvement.Keywords: Athens protocol, anterior Pentacam indices, keratoconus, cross-linking, WaveLight/Alcon excimer laser, EX500 excimer laser, higher fluence collagen cross-linking

  15. Overlapping Communities Detection Based on Link Partition in Directed Networks

    Directory of Open Access Journals (Sweden)

    Qingyu Zou

    2013-09-01

    Full Text Available Many complex systems can be described as networks to comprehend both the structure and the function. Community structure is one of the most important properties of complex networks. Detecting overlapping communities in networks have been more attention in recent years, but the most of approaches to this problem have been applied to the undirected networks. This paper presents a novel approach based on link partition to detect overlapping communities structure in directed networks. In contrast to previous researches focused on grouping nodes, our algorithm defines communities as groups of directed links rather than nodes with the purpose of nodes naturally belong to more than one community. This approach can identify a suitable number of overlapping communities without any prior knowledge about the community in directed networks. We evaluate our algorithm on a simple artificial network and several real-networks. Experimental results demonstrate that the algorithm proposed is efficient for detecting overlapping communities in directed networks.  

  16. ORIGINAL ARTICLE Farber disease overlapping with stiff skin ...

    African Journals Online (AJOL)

    salah

    Background: Farber Disease (MIM 228000)1 is a rare AR disorder first de- scribed by Sidney ... Aim of the Study: Diagnosis and clarification of overlapping in the clinical .... pochromic anemia with anisocytosis, .... a new approach to treatment.

  17. Genetic overlap among intelligence and other candidate endophenotypes for schizophrenia

    NARCIS (Netherlands)

    Aukes, Maartje F; Alizadeh, Behrooz Z; Sitskoorn, Margriet M; Kemner, Chantal; Ophoff, Roel A; Kahn, René S

    2009-01-01

    BACKGROUND: A strategy to improve genetic studies of schizophrenia involves the use of endophenotypes. Information on overlapping genetic contributions among endophenotypes may provide additional power, reveal biological pathways, and have practical implications for genetic research. Several cogniti

  18. Overlap Dirac Operator, Eigenvalues and Random Matrix Theory

    OpenAIRE

    Edwards, Robert G.; Heller, Urs M.; Kiskis, Joe; Narayanan, Rajamani

    1999-01-01

    The properties of the spectrum of the overlap Dirac operator and their relation to random matrix theory are studied. In particular, the predictions from chiral random matrix theory in topologically non-trivial gauge field sectors are tested.

  19. Some new results on the central overlap problem in astrometry

    Science.gov (United States)

    Rapaport, M.

    1998-07-01

    The central overlap problem in astrometry has been revisited in the recent last years by Eichhorn (1988) who explicitly inverted the matrix of a constrained least squares problem. In this paper, the general explicit solution of the unconstrained central overlap problem is given. We also give the explicit solution for an other set of constraints; this result is a confirmation of a conjecture expressed by Eichhorn (1988). We also consider the use of iterative methods to solve the central overlap problem. A surprising result is obtained when the classical Gauss Seidel method is used; the iterations converge immediately to the general solution of the equations; we explain this property writing the central overlap problem in a new set of variables.

  20. Overlapping features of frontotemporal dementia and amyotrophic lateral sclerosis

    National Research Council Canada - National Science Library

    Lillo, Patricia; Matamala, José Manuel; Valenzuela, Daniel; Verdugo, Renato; Castillo, José Luis; Ibáñez, Agustín; Slachevsky, Andrea

    2014-01-01

    ...) and amyotrophic lateral sclerosis (ALS) are overlapping multisystem disorders. While 10-15% of ALS patients fulfil criteria for FTD, features of motor neuron disease appear in approximately 15...

  1. Evaluation of the overlapping of posterior teeth in two techniques of improved interproximal panoramic program and standard panoramic

    Directory of Open Access Journals (Sweden)

    Goodarzi pour D

    2010-06-01

    Full Text Available "nBackground and Aims: Overlapping of the proximal surfaces of posterior teeth in the panoramic radiography is a major concern. Therefore, an option has been developed in the panoramic unit of Planmeca Promax, namely improved interproximal mode. This mode causes lower horizental angle with the teeth contact region during the unit rotation decreasing overlapping of the panoramic images of the posterior teeth especially premolar teeth. The present study was done to compare the overlapping of posterior teeth using two techniques of improved interproximal panoramic program and standard panoramic. "nMaterials and Methods: In this diagnostic study, 32 patients requiring panoramic radiographies at their posterior teeth during their routine diagnosis and treatment process with the mean age of 27.3 years were participated. No patients showed crowding of posterior teeth or missed and restored posterior teeth. The participants' panoramic radiographies were randomly taken by two techniques of improved interproximal panoramic and standard panoramic using Planmeca Promax device. The overlapping of the panoramic images was blindly assessed by an oral radiologist. The overlapping in both techniques was reported by frequency and percentage. The comparisons were done by Chi-square test between two techniques and the odds ratio of overlapping was estimated using regression analysis. "nResults: In standard panoramic techniques, 38.5% (148 contacts of 384 contacts of the proximal surfaces overlapped while the overlapping of the proximal surfaces was observed in 18.8% (72 contacts of 384 overall contacts in improved interproximal technique. Significant differences were noted between two techniques regarding overlapping (P<0.001. Also 66.4% and 39.1% of 4-5 teeth contacts overlapped in standard and improved techniques. The values were reported to be 39.1% and 12.5% in contacts of 5-6 teeth and 10.2% and 4.7% in the contacts of 6-7 teeth in both techniques

  2. Continuum-limit scaling of overlap fermions as valence quarks

    Energy Technology Data Exchange (ETDEWEB)

    Cichy, Krzysztof [Adam Mickiewicz Univ., Poznan (Poland). Faculty of Physics; Herdoiza, Gregorio; Jansen, Karl [Deutsches Elektronen-Synchrotron (DESY), Zeuthen (Germany). John von Neumann-Inst. fuer Computing NIC

    2009-10-15

    We present the results of a mixed action approach, employing dynamical twisted mass fermions in the sea sector and overlap valence fermions, with the aim of testing the continuum limit scaling behaviour of physical quantities, taking the pion decay constant as an example. To render the computations practical, we impose for this purpose a fixed finite volume with lattice size L{approx}1.3 fm. We also briefly review the techniques we have used to deal with overlap fermions. (orig.)

  3. A novel symbol overlapping FFH-OCDMA system

    Institute of Scientific and Technical Information of China (English)

    Chengbin Shen(沈成彬); Chen Wu(吴琛); Jinhui Yu(于金辉); Ge Fan(范戈)

    2004-01-01

    @@ A novel symbol overlapping optical fast frequency-hop code-division multiple access(FFH-OCDMA)sys-tem is proposed,and its bit error rate(BER)performance is investigated under consideration of avalanchephotonic diode(APD)noise auid thermal noise.An experimental symbol overlapping(SO)FFH-OCDMAtestbed is developed and some experimental results axe given.The theoretical and experimental resultsshow that the system is apt to implement and has larger throughput.

  4. Topological summation of observables measured with dynamical overlap fermions

    Energy Technology Data Exchange (ETDEWEB)

    Bietenholz, W. [Deutsches Elektronen-Synchrotron (DESY), Zeuthen (Germany). John von Neumann-Inst. fuer Computing NIC; Hip, I. [Zagreb Univ. (Croatia). Faculty of Geothechnical Engineering

    2008-10-15

    HMC histories for light dynamical overlap fermions tend to stay in a fixed topological sector for many trajectories, so that the different sectors are not sampled properly. Therefore the suitable summation of observables, which have been measured in separate sectors, is a major challenge. We explore several techniques for this issue, based on data for the chiral condensate and the (analogue of the) pion mass in the 2-flavour Schwinger model with dynamical overlap-hypercube fermions. (orig.)

  5. Topological Summation of Observables Measured with Dynamical Overlap Fermions

    OpenAIRE

    2008-01-01

    HMC histories for light dynamical overlap fermions tend to stay in a fixed topological sector for many trajectories, so that the different sectors are not sampled properly. Therefore the suitable summation of observables, which have been measured in separate sectors, is a major challenge. We explore several techniques for this issue, based on data for the chiral condensate and the (analogue of the) pion mass in the 2-flavour Schwinger model with dynamical overlap-hypercube fermions.

  6. Overlap Areas of a Square Box on a Square Mesh

    Science.gov (United States)

    2017-04-01

    ARL-TN-0818 ● APR 2017 US Army Research Laboratory Overlap Areas of a Square Box on a Square Mesh by James U Cazamias...originator. ARL-TN-0818 ● APR 2017 US Army Research Laboratory Overlap Areas of a Square Box on a Square Mesh by James U Cazamias...no person shall be subject to any penalty for failing to comply with a collection of information if it does not display a currently valid OMB control

  7. Gene network interconnectedness and the generalized topological overlap measure

    Directory of Open Access Journals (Sweden)

    Horvath Steve

    2007-01-01

    Full Text Available Abstract Background Network methods are increasingly used to represent the interactions of genes and/or proteins. Genes or proteins that are directly linked may have a similar biological function or may be part of the same biological pathway. Since the information on the connection (adjacency between 2 nodes may be noisy or incomplete, it can be desirable to consider alternative measures of pairwise interconnectedness. Here we study a class of measures that are proportional to the number of neighbors that a pair of nodes share in common. For example, the topological overlap measure by Ravasz et al. 1 can be interpreted as a measure of agreement between the m = 1 step neighborhoods of 2 nodes. Several studies have shown that two proteins having a higher topological overlap are more likely to belong to the same functional class than proteins having a lower topological overlap. Here we address the question whether a measure of topological overlap based on higher-order neighborhoods could give rise to a more robust and sensitive measure of interconnectedness. Results We generalize the topological overlap measure from m = 1 step neighborhoods to m ≥ 2 step neighborhoods. This allows us to define the m-th order generalized topological overlap measure (GTOM by (i counting the number of m-step neighbors that a pair of nodes share and (ii normalizing it to take a value between 0 and 1. Using theoretical arguments, a yeast co-expression network application, and a fly protein network application, we illustrate the usefulness of the proposed measure for module detection and gene neighborhood analysis. Conclusion Topological overlap can serve as an important filter to counter the effects of spurious or missing connections between network nodes. The m-th order topological overlap measure allows one to trade-off sensitivity versus specificity when it comes to defining pairwise interconnectedness and network modules.

  8. No association between plant mating system and geographic range overlap.

    Science.gov (United States)

    Grossenbacher, Dena; Briscoe Runquist, Ryan D; Goldberg, Emma E; Brandvain, Yaniv

    2016-01-01

    Automatic self-fertilization may influence the geography of speciation, promote reproductive isolation between incipient species, and lead to ecological differentiation. As such, selfing taxa are predicted to co-occur more often with their closest relatives than are outcrossing taxa. Despite suggestions that this pattern may be general, the extent to which mating system influences range overlap in close relatives has not been tested formally across a diverse group of plant species pairs. We tested for a difference in range overlap between species pairs for which zero, one, or both species are selfers, using data from 98 sister species pairs in 20 genera across 15 flowering plant families. We also used divergence time estimates from time-calibrated phylogenies to ask how range overlap changes with divergence time and whether this effect depends on mating system. We found no evidence that automatic self-fertilization influenced range overlap of closely related plant species. Sister pairs with more recent divergence times had modestly greater range overlap, but this effect did not depend on mating system. The absence of a strong influence of mating system on range overlap suggests that mating system plays a minor or inconsistent role compared with many other mechanisms potentially influencing the co-occurrence of close relatives. © 2016 Botanical Society of America.

  9. A Bayesian variable selection procedure to rank overlapping gene sets

    Directory of Open Access Journals (Sweden)

    Skarman Axel

    2012-05-01

    Full Text Available Abstract Background Genome-wide expression profiling using microarrays or sequence-based technologies allows us to identify genes and genetic pathways whose expression patterns influence complex traits. Different methods to prioritize gene sets, such as the genes in a given molecular pathway, have been described. In many cases, these methods test one gene set at a time, and therefore do not consider overlaps among the pathways. Here, we present a Bayesian variable selection method to prioritize gene sets that overcomes this limitation by considering all gene sets simultaneously. We applied Bayesian variable selection to differential expression to prioritize the molecular and genetic pathways involved in the responses to Escherichia coli infection in Danish Holstein cows. Results We used a Bayesian variable selection method to prioritize Kyoto Encyclopedia of Genes and Genomes pathways. We used our data to study how the variable selection method was affected by overlaps among the pathways. In addition, we compared our approach to another that ignores the overlaps, and studied the differences in the prioritization. The variable selection method was robust to a change in prior probability and stable given a limited number of observations. Conclusions Bayesian variable selection is a useful way to prioritize gene sets while considering their overlaps. Ignoring the overlaps gives different and possibly misleading results. Additional procedures may be needed in cases of highly overlapping pathways that are hard to prioritize.

  10. Management Model of Resources Equilibrium Distribution among Overlapping-Generations

    Institute of Scientific and Technical Information of China (English)

    Jiang Xuemin; Li Ling

    2004-01-01

    The overlapping generation models the western scholars have designed from various perspectives to address different kinds of issues do not reflect Chinese emerging political and economic problems, and cannot be entirely and blindly applied to Chinese practical situation. In this paper the authors endeavor to incorporate some western scholars' research results into their own research findings to present overlapping generations model theory in a new perspective through establishing an overlapping generations theory on population including articulation of concepts and theorems of biological generation, economic generation and social generation and the overlapping periods in biological generation and two overlapping periods in economic generation among three generations. This management model with equilibrium distribution of resource wealth includes overlapping generations length model (δ),equilibrium transfer model (θ) and a complete model on equilibrium distribution among generations (δ-θ).The model provides quantitative basis for the creation of resource management system, and fills in a theoretical gap in this discipline in China. Besides,it furnishes a new methodology and manipulable tool for Chinese government to establish a comprehensive management information bank for many sectors such as economic trade, population, science and technology, education, human resource, natural resource and environment, agriculture, forestry,industry, mining and energy.

  11. Characterizing Computation-Communication Overlap in Message-Passing Systems

    Energy Technology Data Exchange (ETDEWEB)

    David E. Bernholdt; Jarek Nieplocha; P. Sadayappan; Aniruddha G. Shet; Vinod Tipparaju

    2008-01-31

    Effective overlap of computation and communication is a well understood technique for latency hiding and can yield significant performance gains for applications on high-end computers. In this report, we describe an instrumentation framework developed for messagepassing systems to characterize the degree of overlap of communication with computation in the execution of parallel applications. The inability to obtain precise time-stamps for pertinent communication events is a significant problem, and is addressed by generation of minimum and maximum bounds on achieved overlap. The overlap measures can aid application developers and system designers in investigating scalability issues. The approach has been used to instrument two MPI implementations as well as the ARMCI system. The implementation resides entirely within the communication library and thus integrates well with existing approaches that operate outside the library. The utility of the framework is demonstrated by analyzing communication-computation overlap for micro-benchmarks and the NAS benchmarks, and the insights obtained are used to modify the NAS SP benchmark, resulting in improved overlap.

  12. Characterizing Computation-Communication Overlap in Message-Passing Systems

    Energy Technology Data Exchange (ETDEWEB)

    David E. Bernholdt; Jarek Nieplocha; P. Sadayappan; Aniruddha G. Shet; Vinod Tipparaju

    2008-01-31

    Effective overlap of computation and communication is a well understood technique for latency hiding and can yield significant performance gains for applications on high-end computers. In this report, we describe an instrumentation framework developed for message-passing systems to characterize the degree of overlap of communication with computation in the execution of parallel applications. The inability to obtain precise time-stamps for pertinent communication events is a significant problem, and is addressed by generation of minimum and maximum bounds on achieved overlap. The overlap measures can aid application developers and system designers in investigating scalability issues. The approach has been used to instrument two MPI implementations as well as the ARMCI system. The implementation resides entirely within the communication library and thus integrates well with existing approaches that operate outside the library. The utility of the framework is demonstrated by analyzing communication-computation overlap for micro-benchmarks and the NAS benchmarks, and the insights obtained are used to modify the NAS SP benchmark, resulting in improved overlap.

  13. Recent progress in Rashba spin orbit coupling on metal surface%金属表面Rashba自旋轨道耦合作用研究进展

    Institute of Scientific and Technical Information of China (English)

    龚士静; 段纯刚

    2015-01-01

    Spin-orbit coupling (SOC) is a bridge between the spin and orbital of an electron. Through SOC, spin of the electron can possibly be controlled throuth external electric fields. It is found that many novel physical phenomena in solids are related with SOC, for example, the magnetic anisotropy of magnetic materials, the spin Hall effect, and the topological insulator, etc. In the surface of solid or at the interface of heterostructure, Rashba SOC is induced by the structure inversion asymmetry. It was observed first in semiconductor heterostructure, which has an inversion asymmetric potential at the interface. Because Rashba SOC at the interface can be easily controlled through gate voltage, it is of great significance in the field of electric control of magnetism. Metal surface subsequent to semiconductor becomes another main stream with large Rashba SOC. In this paper, we review the recent progress in Rashba SOC in metal surfaces, including both the magnetic and nonmagnetic metal surfaces. We demonstrate the findings in Au(111), Bi(111), Gd(0001), etc., and discuss the possible factors that could influence Rashba SOC, including the surface potential gradient, atom number, the symmetry of the surface wavefunction, and the hybridization between the different orbitals in the surface states, etc. We also discuss the manipulation of Rashba SOC through electric field or surface decoration. In addition, on magnetic surface, there coexist Rashba SOC and magnetic exchange interaction, which provides the possibility of controlling magnetic properties by electric field through Rashba SOC. The angle-resolved photoemission spectroscopy and the first-principles calculations based on density functional theory are the two main methods to investigate the Rashba SOC. We review the results obtained by these two approaches and provide a thorough understanding of the Rashba SOC in metal surface.%自旋轨道耦合是电子自旋与轨道相互作用的桥梁, 它提供了利用外电

  14. Systemic Lupus Erythematosus and Antineutrophil Cytoplasmic Antibody-Associated Vasculitis Overlap Syndrome in Patients With Biopsy-Proven Glomerulonephritis.

    Science.gov (United States)

    Jarrot, Pierre-Andre; Chiche, Laurent; Hervier, Baptiste; Daniel, Laurent; Vuiblet, Vincent; Bardin, Nathalie; Bertin, Daniel; Terrier, Benjamin; Amoura, Zahir; Andrés, Emmanuel; Rondeau, Eric; Hamidou, Mohamed; Pennaforte, Jean-Loup; Halfon, Philippe; Daugas, Eric; Dussol, Bertrand; Puéchal, Xavier; Kaplanski, Gilles; Jourde-Chiche, Noemie

    2016-05-01

    The aim of the study was to report the clinical, biological, and pathological characteristics of patients with glomerulonephritis (GN) secondary to systemic lupus erythematosus (SLE)/antineutrophil cytoplasmic antibodies (ANCA)-associated vasculitis (AAV) overlap syndrome.A nationwide survey was conducted to identify cases of SLE/AAV overlap syndrome. Data were collected from SLE and AAV French research groups. Inclusion criteria were diagnosis of both SLE and AAV according to international classification criteria and biopsy-proven GN between 1995 and 2014. Additional cases were identified through a systematic literature review. A cohort of consecutive biopsy-proven GN was used to study the prevalence of overlapping antibodies and/or overlap syndrome.The national survey identified 8 cases of SLE/AAV overlap syndrome. All patients were female; median age was 40 years. AAV occurred before SLE (n = 3), after (n = 3), or concomitantly (n = 2). Six patients had rapidly progressive GN and 3/8 had alveolar hemorrhage. All patients had antinuclear antibodies (ANA); 7/8 had p-ANCA antimyeloperoxidase (MPO) antibodies. Renal biopsies showed lupus nephritis (LN) or pauci-immune GN. Remission was obtained in 4/8 patients. A literature review identified 31 additional cases with a similarly severe presentation. In the GN cohort, ANCA positivity was found in 30% of LN, ANA positivity in 52% of pauci-immune GN, with no correlation with pathological findings. The estimated prevalence for SLE/AAV overlap syndrome was 2/101 (2%).In patients with GN, SLE/AAV overlap syndrome may occur but with a low prevalence. Most patients have an aggressive renal presentation, with usually both ANA and anti-MPO antibodies. Further studies are needed to assess shared pathogenesis and therapeutic options.

  15. Systemic Lupus Erythematosus and Antineutrophil Cytoplasmic Antibody-Associated Vasculitis Overlap Syndrome in Patients With Biopsy-Proven Glomerulonephritis

    Science.gov (United States)

    Jarrot, Pierre-Andre; Chiche, Laurent; Hervier, Baptiste; Daniel, Laurent; Vuiblet, Vincent; Bardin, Nathalie; Bertin, Daniel; Terrier, Benjamin; Amoura, Zahir; Andrés, Emmanuel; Rondeau, Eric; Hamidou, Mohamed; Pennaforte, Jean-Loup; Halfon, Philippe; Daugas, Eric; Dussol, Bertrand; Puéchal, Xavier; Kaplanski, Gilles; Jourde-Chiche, Noemie

    2016-01-01

    Abstract The aim of the study was to report the clinical, biological, and pathological characteristics of patients with glomerulonephritis (GN) secondary to systemic lupus erythematosus (SLE)/antineutrophil cytoplasmic antibodies (ANCA)-associated vasculitis (AAV) overlap syndrome. A nationwide survey was conducted to identify cases of SLE/AAV overlap syndrome. Data were collected from SLE and AAV French research groups. Inclusion criteria were diagnosis of both SLE and AAV according to international classification criteria and biopsy-proven GN between 1995 and 2014. Additional cases were identified through a systematic literature review. A cohort of consecutive biopsy-proven GN was used to study the prevalence of overlapping antibodies and/or overlap syndrome. The national survey identified 8 cases of SLE/AAV overlap syndrome. All patients were female; median age was 40 years. AAV occurred before SLE (n = 3), after (n = 3), or concomitantly (n = 2). Six patients had rapidly progressive GN and 3/8 had alveolar hemorrhage. All patients had antinuclear antibodies (ANA); 7/8 had p-ANCA antimyeloperoxidase (MPO) antibodies. Renal biopsies showed lupus nephritis (LN) or pauci-immune GN. Remission was obtained in 4/8 patients. A literature review identified 31 additional cases with a similarly severe presentation. In the GN cohort, ANCA positivity was found in 30% of LN, ANA positivity in 52% of pauci-immune GN, with no correlation with pathological findings. The estimated prevalence for SLE/AAV overlap syndrome was 2/101 (2%). In patients with GN, SLE/AAV overlap syndrome may occur but with a low prevalence. Most patients have an aggressive renal presentation, with usually both ANA and anti-MPO antibodies. Further studies are needed to assess shared pathogenesis and therapeutic options. PMID:27258503

  16. 太赫兹波段表面等离子光子学研究进展%Progress in terahertz surface plasmonics

    Institute of Scientific and Technical Information of China (English)

    王玥; 王暄; 贺训军; 梅金硕; 陈明华; 殷景华; 雷清泉

    2012-01-01

    Plasmonics, which deals with the unique optical properties of metallic and semiconductor nanostructure, is one of the most fascinating and fast-moving areas of photouics. Its board scale research in the visible, infrared, terahertz and microwave frequencies has chiven by the advances in the micro/nano fabrication and the computational simulation technologies, as well as the potential applications in areas of high sensitivity bio-chemical sensing, sub-wavelength light-guiding, near-field microcopy, and nanolithography. Especially, the development of the artificial metamaterial has laid the good foundation for the material and devices in the terahertz frequency range, which is barely responded by the nature materials, and furthermore, has promoted the progress of terahertz surface plasmonics. In this paper the generation, propagation, new applications, and perspective of terahetz surface plamonics are reviewed and discussed.%表面等离子光子学是研究金属、半导体纳米结构材料独特的光学特性,是目前光子学中最有吸引力、发展最快的领域之一.伴随着微/纳制造技术与计算机模拟技术的进步,表面等离子光子学在可见光、红外、太赫兹以及微波频域得到了广泛研究,在高灵敏生化传感、亚波长光波导、近场光学显微、纳米光刻等领域有潜在的应用价值.特别是人工超材料的发展,为自然界长期缺乏响应太赫兹波的材料和器件奠定了基础,从而也促进了太赫兹波段表面等离子光子学的研究.本文从太赫兹表面等离子波的激发、传导、最新应用及未来发展趋势等几个方面进行了回顾和讨论,将最新研究成果展示给读者.

  17. Presentation of dynamically overlapping auditory messages in user interfaces

    Energy Technology Data Exchange (ETDEWEB)

    Papp, III, Albert Louis [Univ. of California, Davis, CA (United States)

    1997-09-01

    This dissertation describes a methodology and example implementation for the dynamic regulation of temporally overlapping auditory messages in computer-user interfaces. The regulation mechanism exists to schedule numerous overlapping auditory messages in such a way that each individual message remains perceptually distinct from all others. The method is based on the research conducted in the area of auditory scene analysis. While numerous applications have been engineered to present the user with temporally overlapped auditory output, they have generally been designed without any structured method of controlling the perceptual aspects of the sound. The method of scheduling temporally overlapping sounds has been extended to function in an environment where numerous applications can present sound independently of each other. The Centralized Audio Presentation System is a global regulation mechanism that controls all audio output requests made from all currently running applications. The notion of multimodal objects is explored in this system as well. Each audio request that represents a particular message can include numerous auditory representations, such as musical motives and voice. The Presentation System scheduling algorithm selects the best representation according to the current global auditory system state, and presents it to the user within the request constraints of priority and maximum acceptable latency. The perceptual conflicts between temporally overlapping audio messages are examined in depth through the Computational Auditory Scene Synthesizer. At the heart of this system is a heuristic-based auditory scene synthesis scheduling method. Different schedules of overlapped sounds are evaluated and assigned penalty scores. High scores represent presentations that include perceptual conflicts between over-lapping sounds. Low scores indicate fewer and less serious conflicts. A user study was conducted to validate that the perceptual difficulties predicted by

  18. Peak overlaps and corresponding solutions in the X-ray photoelectron spectroscopic study of hydrodesulfurization catalysts

    Energy Technology Data Exchange (ETDEWEB)

    Qiu Limei [Research Institute of Petroleum Processing, SINOPEC, 18 Xue Yuan Road, 100083 Beijing (China); Xu Guangtong, E-mail: gtxu@sina.com [Research Institute of Petroleum Processing, SINOPEC, 18 Xue Yuan Road, 100083 Beijing (China)

    2010-03-15

    Al{sub 2}O{sub 3}-SiO{sub 2}-based Co(Ni)-Mo(W)-S catalysts are widely investigated hydrodesulfurization (HDS) catalysts in recent decades. XPS is a suitable technique to detect the surface properties of HDS catalysts. Typical overlapping spectra in the XPS analysis of HDS catalysts, such as Mo3d and S2s, Si2p and bremsstrahlung-induced Al KL{sub 23}L{sub 23} using nonmonochromatic AlK{alpha} source, W4f and W5p{sub 3/2}, as well as the disturbance of Auger lines on Ni2p and Co2p, are carefully studied in the present paper. Besides, effective methods to overcome the influence of peak overlaps are illustrated. These results would provide basic and important information in interpreting XPS results of HDS catalysts.

  19. Environmental Niche Overlap between Common and Dusky Dolphins in North Patagonia, Argentina

    Science.gov (United States)

    Svendsen, Guillermo Martín; Romero, María Alejandra; Williams, Gabriela Noemí; Gagliardini, Domingo Antonio; Crespo, Enrique Alberto; Dans, Silvana Laura; González, Raúl Alberto

    2015-01-01

    Research on the ecology of sympatric dolphins has increased worldwide in recent decades. However, many dolphin associations such as that between common dolphins (Delphinus delphis) and dusky dolphins (Lagenorhynchus obscurus) are poorly understood. The present study was conducted in the San Matías Gulf (SMG) ecosystem (North Patagonia, Argentina) where a high diet overlap among both species was found. The main objective of the present work was to explore the niche overlap of common and dusky dolphins in the habitat and temporal dimensions. The specific aims were (a) to evaluate the habitat use strategies of both species through a comparison of their group attributes (social composition, size and activity), and (b) to evaluate their habitat preferences and habitat overlap through Environmental Niche modeling considering two oceanographic seasons. To accomplish these aims, we used a historic database of opportunistic and systematic records collected from 1983 to 2011. Common and dusky dolphins exhibited similar patterns of group size (from less than 10 to more than 100 individuals), activity (both species use the area to feed, nurse, and copulate), and composition (adults, juveniles, and mothers with calves were observed for both species). Also, both species were observed travelling and feeding in mixed-species groups. Specific overlap indices were higher for common dolphins than for dusky dolphins, but all indices were low, suggesting that they are mainly segregated in the habitat dimension. In the case of common dolphins, the best habitats were located in the northwest of the gulf far from the coast. In the warm season they prefer areas with temperate sea surface and in the cold season they prefer areas with relatively high variability of sea surface temperature. Meanwhile, dusky dolphins prefer areas with steep slopes close to the coast in the southwestern sector of the gulf in both seasons. PMID:26091542

  20. Environmental Niche Overlap between Common and Dusky Dolphins in North Patagonia, Argentina.

    Directory of Open Access Journals (Sweden)

    Guillermo Martín Svendsen

    Full Text Available Research on the ecology of sympatric dolphins has increased worldwide in recent decades. However, many dolphin associations such as that between common dolphins (Delphinus delphis and dusky dolphins (Lagenorhynchus obscurus are poorly understood. The present study was conducted in the San Matías Gulf (SMG ecosystem (North Patagonia, Argentina where a high diet overlap among both species was found. The main objective of the present work was to explore the niche overlap of common and dusky dolphins in the habitat and temporal dimensions. The specific aims were (a to evaluate the habitat use strategies of both species through a comparison of their group attributes (social composition, size and activity, and (b to evaluate their habitat preferences and habitat overlap through Environmental Niche modeling considering two oceanographic seasons. To accomplish these aims, we used a historic database of opportunistic and systematic records collected from 1983 to 2011. Common and dusky dolphins exhibited similar patterns of group size (from less than 10 to more than 100 individuals, activity (both species use the area to feed, nurse, and copulate, and composition (adults, juveniles, and mothers with calves were observed for both species. Also, both species were observed travelling and feeding in mixed-species groups. Specific overlap indices were higher for common dolphins than for dusky dolphins, but all indices were low, suggesting that they are mainly segregated in the habitat dimension. In the case of common dolphins, the best habitats were located in the northwest of the gulf far from the coast. In the warm season they prefer areas with temperate sea surface and in the cold season they prefer areas with relatively high variability of sea surface temperature. Meanwhile, dusky dolphins prefer areas with steep slopes close to the coast in the southwestern sector of the gulf in both seasons.

  1. [A case of clinical overlap syndrome of rheumatoid arthritis and amyopathic dermatomyositis with multiple pulmonary injuries].

    Science.gov (United States)

    Liu, Shuang; An, Yuan; Jia, Yuan; Li, Zhan-guo

    2014-10-18

    Autoimmune diseases can cause various kinds of lung injuries. Clinical features of a case of overlap syndrome with multiple pulmonary injuries were investigated, and the treatment experiences discussed. The patient suffered from rheumatoid arthritis (RA) at first, and then had a lobectomy surgery due to the rheumatoid nodules in her right lung. A year later her disease was diagnosed as amyopathic dermatomyositis (ADM) with typical Gottron's sign, craftsmen hands and rapid-progressive organizing pneumonia (OP). After a combined treatment with glucocorticoids (GCs) and cyclophosphamide (CTX), her OP became better but lung infections progressed. Her lung infections eventually were cured after we used antibiotics and antifungal treatment while we ceased to use CTX and reduced the dosage of GCs. The clinical feature of the patient was overlap syndrome with a variety of lung injuries, such as pulmonary rheumatoid nodules, OP, secondary bronchopleural fistula and lung infections. Its diagnosis and treatment experiences could improve our understanding of pulmonary manifestations of connective tissue disease and improve our diagnosis and treatment level.

  2. Hierarchical Overlapping Clustering of Network Data Using Cut Metrics

    CERN Document Server

    Gama, Fernando; Ribeiro, Alejandro

    2016-01-01

    A novel method to obtain hierarchical and overlapping clusters from network data -i.e., a set of nodes endowed with pairwise dissimilarities- is presented. The introduced method is hierarchical in the sense that it outputs a nested collection of groupings of the node set depending on the resolution or degree of similarity desired, and it is overlapping since it allows nodes to belong to more than one group. Our construction is rooted on the facts that a hierarchical (non-overlapping) clustering of a network can be equivalently represented by a finite ultrametric space and that a convex combination of ultrametrics results in a cut metric. By applying a hierarchical (non-overlapping) clustering method to multiple dithered versions of a given network and then convexly combining the resulting ultrametrics, we obtain a cut metric associated to the network of interest. We then show how to extract a hierarchical overlapping clustering structure from the aforementioned cut metric. Furthermore, the so-called overlappi...

  3. A Bayesian variable selection procedure for ranking overlapping gene sets

    DEFF Research Database (Denmark)

    Skarman, Axel; Mahdi Shariati, Mohammad; Janss, Luc

    2012-01-01

    described. In many cases, these methods test one gene set at a time, and therefore do not consider overlaps among the pathways. Here, we present a Bayesian variable selection method to prioritize gene sets that overcomes this limitation by considering all gene sets simultaneously. We applied Bayesian...... variable selection to differential expression to prioritize the molecular and genetic pathways involved in the responses to Escherichia coli infection in Danish Holstein cows. Results We used a Bayesian variable selection method to prioritize Kyoto Encyclopedia of Genes and Genomes pathways. We used our...... data to study how the variable selection method was affected by overlaps among the pathways. In addition, we compared our approach to another that ignores the overlaps, and studied the differences in the prioritization. The variable selection method was robust to a change in prior probability...

  4. Overlapping community detection in weighted networks via a Bayesian approach

    Science.gov (United States)

    Chen, Yi; Wang, Xiaolong; Xiang, Xin; Tang, Buzhou; Chen, Qingcai; Fan, Shixi; Bu, Junzhao

    2017-02-01

    Complex networks as a powerful way to represent complex systems have been widely studied during the past several years. One of the most important tasks of complex network analysis is to detect communities embedded in networks. In the real world, weighted networks are very common and may contain overlapping communities where a node is allowed to belong to multiple communities. In this paper, we propose a novel Bayesian approach, called the Bayesian mixture network (BMN) model, to detect overlapping communities in weighted networks. The advantages of our method are (i) providing soft-partition solutions in weighted networks; (ii) providing soft memberships, which quantify 'how strongly' a node belongs to a community. Experiments on a large number of real and synthetic networks show that our model has the ability in detecting overlapping communities in weighted networks and is competitive with other state-of-the-art models at shedding light on community partition.

  5. Iterative methods for overlap and twisted mass fermions

    Energy Technology Data Exchange (ETDEWEB)

    Chiarappa, T. [Univ. di Milano Bicocca (Italy); Jansen, K.; Shindler, A.; Wetzorke, I. [Deutsches Elektronen-Synchrotron (DESY), Zeuthen (Germany). John von Neumann-Inst. fuer Computing NIC; Nagai, K.I. [Wuppertal Univ. (Gesamthochschule) (Germany). Fachbereich Physik; Papinutto, M. [INFN Sezione di Roma Tre, Rome (Italy); Scorzato, L. [European Centre for Theoretical Studies in Nuclear Physics and Related Areas (ECT), Villazzano (Italy); Urbach, C. [Liverpool Univ. (United Kingdom). Dept. of Mathematical Sciences; Wenger, U. [ETH Zuerich (Switzerland). Inst. fuer Theoretische Physik

    2006-09-15

    We present a comparison of a number of iterative solvers of linear systems of equations for obtaining the fermion propagator in lattice QCD. In particular, we consider chirally invariant overlap and chirally improved Wilson (maximally) twisted mass fermions. The comparison of both formulations of lattice QCD is performed at four fixed values of the pion mass between 230 MeV and 720 MeV. For overlap fermions we address adaptive precision and low mode preconditioning while for twisted mass fermions we discuss even/odd preconditioning. Taking the best available algorithms in each case we find that calculations with the overlap operator are by a factor of 30-120 more expensive than with the twisted mass operator. (orig.)

  6. Piles, Tabs and Overlaps in Navigation among Documents

    DEFF Research Database (Denmark)

    Jakobsen, Mikkel Rønne; Hornbæk, Kasper Anders Søren

    2010-01-01

    documents worked well for tasks that involved visual features of the documents, but the utility of recency or stable ordering of documents was task dependent. Based on the results, we discuss the effects of spatial arrangement, visibility, and task-dependency, and suggest areas for future research......Navigation among documents is a frequent, but ill supported activity. Overlapping or tabbed documents are widespread, but they offer limited visibility of their content. We explore variations on navigation support: arranging documents with tabs, as overlapping windows, and in piles....... In an experiment we compared 11 participants’ navigation with these variations and found strong task effects. Overall, overlapping windows were preferred and their structured layout worked well with some tasks. Surprisingly, tabbed documents were efficient in tasks requiring simply finding a document. Piled...

  7. Climate-induced range overlap among closely related species

    Science.gov (United States)

    Krosby, Meade; Wilsey, Chad B.; McGuire, Jenny L.; Duggan, Jennifer M.; Nogeire, Theresa M.; Heinrichs, Julie A.; Tewksbury, Joshua J.; Lawler, Joshua J.

    2015-09-01

    Contemporary climate change is causing large shifts in biotic distributions, which has the potential to bring previously isolated, closely related species into contact. This has led to concern that hybridization and competition could threaten species persistence. Here, we use bioclimatic models to show that future range overlap by the end of the century is predicted for only 6.4% of isolated, congeneric species pairs of New World birds, mammals and amphibians. Projected rates of climate-induced overlap are higher for birds (11.6%) than for mammals (4.4%) or amphibians (3.6%). As many species will have difficulty tracking shifting climates, actual rates of future overlap are likely to be far lower, suggesting that hybridization and competition impacts may be relatively modest.

  8. Overlap syndromes of autoimmune hepatitis: an open question.

    Science.gov (United States)

    Durazzo, Marilena; Premoli, Alberto; Paschetta, Elena; Belci, Paola; Spandre, Maurizio; Bo, Simona

    2013-02-01

    The headword "overlap syndromes" of liver diseases includes the coexistence of autoimmune hepatitis, primary biliary cirrhosis, and primary sclerosing cholangitis. These syndromes often represent a diagnostic and therapeutic challenge for hepatologists; it remains unclear whether these overlap syndromes form distinct entities or they are only variants of the major autoimmune liver diseases. The most frequent reported association occurs between autoimmune hepatitis and primary biliary cirrhosis, whereas the overlap between autoimmune hepatitis and primary sclerosing cholangitis is less frequent, typically at young age and often attendant with an inflammatory bowel disease. The choice therapy is based on ursodeoxycholic acid and immunosuppressive drugs, used at the same time or consecutively, according to the course of disease. The diagnostic scores for autoimmune hepatitis can help for diagnosis, even though their definitive soundness is lacking.

  9. Overlapped flowers yield detection using computer-based interface

    Directory of Open Access Journals (Sweden)

    Anuradha Sharma

    2016-09-01

    Full Text Available Precision agriculture has always dealt with the accuracy and timely information about agricultural products. With the help of computer hardware and software technology designing a decision support system that could generate flower yield information and serve as base for management and planning of flower marketing is made so easy. Despite such technologies, some problem still arise, for example, a colour homogeneity of a specimen which cannot be obtained similar to actual colour of image and overlapping of image. In this paper implementing a new ‘counting algorithm’ for overlapped flower is being discussed. For implementing this algorithm, some techniques and operations such as colour image segmentation technique, image segmentation, using HSV colour space and morphological operations have been used. In this paper used two most popular colour space; those are RGB and HSV. HSV colour space decouples brightness from a chromatic component in the image, by which it provides better result in case for occlusion and overlapping.

  10. Iterative methods for overlap and twisted mass fermions

    Energy Technology Data Exchange (ETDEWEB)

    Chiarappa, T. [Univ. di Milano Bicocca (Italy); Jansen, K.; Shindler, A.; Wetzorke, I. [Deutsches Elektronen-Synchrotron (DESY), Zeuthen (Germany). John von Neumann-Inst. fuer Computing NIC; Nagai, K.I. [Wuppertal Univ. (Gesamthochschule) (Germany). Fachbereich Physik; Papinutto, M. [INFN Sezione di Roma Tre, Rome (Italy); Scorzato, L. [European Centre for Theoretical Studies in Nuclear Physics and Related Areas (ECT), Villazzano (Italy); Urbach, C. [Liverpool Univ. (United Kingdom). Dept. of Mathematical Sciences; Wenger, U. [ETH Zuerich (Switzerland). Inst. fuer Theoretische Physik

    2006-09-15

    We present a comparison of a number of iterative solvers of linear systems of equations for obtaining the fermion propagator in lattice QCD. In particular, we consider chirally invariant overlap and chirally improved Wilson (maximally) twisted mass fermions. The comparison of both formulations of lattice QCD is performed at four fixed values of the pion mass between 230 MeV and 720 MeV. For overlap fermions we address adaptive precision and low mode preconditioning while for twisted mass fermions we discuss even/odd preconditioning. Taking the best available algorithms in each case we find that calculations with the overlap operator are by a factor of 30-120 more expensive than with the twisted mass operator. (orig.)

  11. Detecting highly overlapping community structure by greedy clique expansion

    CERN Document Server

    Lee, Conrad; McDaid, Aaron; Hurley, Neil

    2010-01-01

    In complex networks it is common for each node to belong to several communities, implying a highly overlapping community structure. Recent advances in benchmarking indicate that existing community assignment algorithms, capable of detecting overlapping communities, perform well only when the extent of community overlap is kept to modest levels. To overcome this limitation, we introduce a new community assignment algorithm called Greedy Clique Expansion (GCE). The algorithm identifies distinct cliques as seeds and expands these seeds by greedily optimizing a local fitness function. We perform extensive benchmarks on synthetic data to demonstrate that GCE's good performance is robust across diverse graph topologies. Significantly, GCE is the only algorithm to perform well on these synthetic graphs, in which every node belongs to multiple communities. Furthermore, when put to the task of identifying functional modules in protein interaction data, and college dorm assignments in Facebook friendship data, we find ...

  12. The eigSUMR inverter for overlap fermion

    CERN Document Server

    Cundy, Nigel

    2015-01-01

    We discuss the usage and applicability of deflation methods for the overlap lattice Dirac operator, focussing on calculating the eigenvalues using a method similar to the eigCG algorithm used for other Dirac operators. The overlap operator, which contains several theoretical advantages over other formulations of lattice Quantum Chromodynamics, is more computationally expensive because it requires the computation of the matrix sign function. The principle change made compared to deflation methods for other formulations of lattice QCD is that it is necessary for best performance to tune or relax the accuracy of the matrix sign function as the computation proceeds. We adapt the eigCG algorithm for two inversion algorithms for overlap fermions, GMRESR(relCG) and GMRESR(relSUMR). Before deflation, the rate of convergence of these routines in terms of iterations is similar, but, since the Shifted Unitary Minimal Residual (SUMR) algorithm only requires one call to the matrix sign function compared to the two calls r...

  13. An Overview on Primary Progressive Aphasia and Its Variants

    Directory of Open Access Journals (Sweden)

    Serena Amici

    2006-01-01

    Full Text Available We present a review of the literature on Primary Progressive Aphasia (PPA together with the analysis of neuropschychological and neuroradiologic profiles of 42 PPA patients. Mesulam originally defined PPA as a progressive degenerative disorder characterized by isolated language impairment for at least two years. The most common variants of PPA are: (1 Progressive nonfluent aphasia (PNFA, (2 semantic dementia (SD, (3 logopenic progressive aphasia (LPA. PNFA is characterized by labored speech, agrammatism in production, and/or comprehension. In some cases the syndrome begins with isolated deficits in speech. SD patients typically present with loss of word and object meaning and surface dyslexia. LPA patients have word-finding difficulties, syntactically simple but accurate language output and impaired sentence comprehension. The neuropsychological data demonstrated that SD patients show the most characteristic pattern of impairment, while PNFA and LPA overlap within many cognitive domains. The neuroimaging analysis showed left perisylvian region involvement. A comprehensive cognitive, neuroimaging and pathological approach is necessary to identify the clinical and pathogenetic features of different PPA variants.

  14. Toxic epidermal necrolysis, DRESS, AGEP: Do overlap cases exist?

    Directory of Open Access Journals (Sweden)

    Bouvresse Sophie

    2012-09-01

    Full Text Available Abstract Background Severe cutaneous adverse reactions to drugs (SCARs include acute generalized exanthematous pustulosis (AGEP, drug reaction with eosinophilia and systemic symptoms (DRESS and epidermal necrolysis (Stevens-Johnson syndrome–toxic epidermal necrolysis [SJS-TEN]. Because of the varied initial presentation of such adverse drug reactions, diagnosis may be difficult and suggests overlap among SCARs. Overlapping SCARs are defined as cases fulfilling the criteria for definite or probable diagnosis of at least 2 ADRs according to scoring systems for AGEP, DRESS and SJS-TEN. We aimed to evaluate the prevalence of overlap among SCARs among cases in the referral hospital in France. Methods We retrospectively analyzed data for 216 patients hospitalized in the referral centre over 7 years with a discharge diagnosis of AGEP (n = 45, DRESS (n = 47, SJS-TEN (n = 80 or “drug rash” (n = 44. Each case with detailed clinical data and a skin biopsy specimen was scored for AGEP, DRESS and SJS-TEN by use of diagnostic scores elaborated by the RegiSCAR group. Results In total, 45 of 216 cases (21% had at least 2 possible diagnoses: 35 had a single predominant diagnosis (definite or probable, 7 had several possible diagnoses and 3 (2.1% of 145 confirmed SCARs were overlap SCARs. Conclusions Despite ambiguities among SCARs, confirmed overlap cases are rare. This study did not avoid pitfalls linked to its retrospective nature and selection bias. In the acute stage of disease, early identification of severe ADRs can be difficult because of clinical or biologic overlapping features and missing data on histology, biology and evolution. Retrospectively analyzing cases by use of diagnostic algorithms can lead to reliable discrimination among AGEP, DRESS and SJS-TEN.

  15. Overlapping illusions by transformation optics without any negative refraction material

    Science.gov (United States)

    Sun, Fei; He, Sailing

    2016-01-01

    A novel method to achieve an overlapping illusion without any negative refraction index material is introduced with the help of the optic-null medium (ONM) designed by an extremely stretching spatial transformation. Unlike the previous methods to achieve such an optical illusion by transformation optics (TO), our method can achieve a power combination and reshape the radiation pattern at the same time. Unlike the overlapping illusion with some negative refraction index material, our method is not sensitive to the loss of the materials. Other advantages over existing methods are discussed. Numerical simulations are given to verify the performance of the proposed devices.

  16. Overlaps after quantum quenches in the sine-Gordon model

    Science.gov (United States)

    Horváth, D. X.; Takács, G.

    2017-08-01

    We present a numerical computation of overlaps in mass quenches in sine-Gordon quantum field theory using truncated conformal space approach (TCSA). To improve the cut-off dependence of the method, we use a novel running coupling definition which has a general applicability in free boson TCSA. The numerical results for the first breather overlaps are compared with the analytic continuation of a previously proposed analytical Ansatz for the initial state in a related sinh-Gordon quench, and good agreement is found between the numerical data and the analytical prediction in a large energy range.

  17. QCD thermodynamics with continuum extrapolated dynamical overlap fermions

    CERN Document Server

    Borsanyi, Sz; Lippert, T; Nogradi, D; Pittler, F; Szabo, K K; Toth, B C

    2015-01-01

    We study the finite temperature transition in QCD with two flavors of dynamical fermions at a pseudoscalar pion mass of about 350 MeV. We use lattices with temporal extent of $N_t$=8, 10 and 12. For the first time in the literature a continuum limit is carried out for several observables with dynamical overlap fermions. These findings are compared with results obtained within the staggered fermion formalism at the same pion masses and extrapolated to the continuum limit. The presented results correspond to fixed topology and its effect is studied in the staggered case. Nice agreement is found between the overlap and staggered results.

  18. Neurofibromatosis type 1 with overlap Turner syndrome and Klinefelter syndrome.

    Science.gov (United States)

    Hatipoglu, Nihal; Kurtoglu, Selim; Kendirci, Mustafa; Keskin, Mehmet; Per, Hüseyin

    2010-02-01

    Turner's syndrome is a sex chromosome disorder. Klinefelter's syndrome is one of the most severe genetic diseases. Neurofibromatosis is an autosomal dominant disorder characterized by cafe-au-lait spots and fibromatous tumors of the skin. In this article, we report the overlap of neurofibromatosis-1 with Turner and Klinefelter syndromes. Thus, these disorders might overlap within the same patient. Due to these cases, we suggest that each patient with Turner-like symptoms or Klinefelter's-like syndrome, be carefully examined for café au lait macules before the initiation of hormone replacement treatment.

  19. Characteristics and self-rated health of overlap syndrome

    Directory of Open Access Journals (Sweden)

    Chung JW

    2014-07-01

    Full Text Available Jung Wha Chung,1 Kyoung Ae Kong,2 Jin Hwa Lee,1 Seok Jeong Lee,1 Yon Ju Ryu,1 Jung Hyun Chang11Division of Pulmonary and Critical Care Medicine, Department of Internal Medicine, School of Medicine, Ewha Womans University, 2Clinical Trial Center, Ewha Womans University Mokdong Hospital, Seoul, Korea Background and objective: Overlap syndrome shares features of both asthma and chronic obstructive pulmonary disease (COPD. The aim of this study was to investigate characteristics of overlap syndrome and their effect on self-rated health (SRH. Methods: We analyzed data from the Fourth Korea National Health and Nutrition Examination Survey of 2007–2009. Subjects with acceptable spirometry and available wheezing history were included. Subjects were classified into four groups based on forced expiratory volume in one second (FEV1/forced vital capacity (FVC results and the presence or absence of self-reported wheezing for the previous 12 months: 1 COPD group, defined as having FEV1/FVC <0.7 without self-reported wheezing history; 2 asthma group, defined as having self-reported wheezing history without FEV1/FVC <0.7; 3 overlap syndrome group, having both FEV1/FVC <0.7 and wheezing history; and 4 non-obstructive disease (NOD group, having neither FEV1/FVC <0.7 nor self-reported wheezing. SRH was categorized as better or lower based on responses to a questionnaire. Results: From a total 9,104 subjects, 700 were assigned to the COPD group, 560 to the asthma group, 210 to the overlap syndrome group, and 7,634 to the NOD group. Compared to the other groups, subjects in the overlap syndrome group were more likely to have low lung function, a high proportion of smokers, low socioeconomic status, short education duration, lower SRH, and past diagnosis of pulmonary tuberculosis or bronchiectasis. Multiple logistic regression analysis revealed that both overlap syndrome and asthma groups were independently associated with lower SRH after adjustment for age, sex

  20. Experimental characterization of Raman overlaps between mode-groups

    DEFF Research Database (Denmark)

    Christensen, Erik Nicolai; Koefoed, Jacob Gade; Friis, Søren Michael Mørk;

    2016-01-01

    -equalized gain. In this paper, we present an experimental characterization of the intermodal Raman intensity overlaps of a few-mode fiber using backward-pumped Raman amplification. By varying the input pump power and the degree of higher order mode-excitation for the pump and the signal in a 10km long two......-mode fiber, we are able to characterize all intermodal Raman intensity overlaps. Using these results, we perform a Raman amplification measurement and demonstrate a mode-differential gain of only 0.25dB per 10dB overall gain. This is, to the best of our knowledge, the lowest mode differential gain achieved...

  1. Detect overlapping and hierarchical community structure in networks

    CERN Document Server

    Shen, Huawei; Cai, Kai; Hu, Mao-Bin

    2008-01-01

    Clustering and community structure is crucial for many network systems and the related dynamic processes. It has been shown that communities are usually overlapping and hierarchical. However, previous methods investigate these two properties of community structure separately. This paper propose an algorithm (EAGLE) to detect both the overlapping and hierarchical properties of complex community structure together. This algorithm deals with the set of maximal cliques and adopts an agglomerative framework. The quality function of modularity is extended to evaluate the goodness of a cover. The examples of application to real world networks give excellent results.

  2. Ocean-wide tracking of pelagic sharks reveals extent of overlap with longline fishing hotspots.

    Science.gov (United States)

    Queiroz, Nuno; Humphries, Nicolas E; Mucientes, Gonzalo; Hammerschlag, Neil; Lima, Fernando P; Scales, Kylie L; Miller, Peter I; Sousa, Lara L; Seabra, Rui; Sims, David W

    2016-02-09

    Overfishing is arguably the greatest ecological threat facing the oceans, yet catches of many highly migratory fishes including oceanic sharks remain largely unregulated with poor monitoring and data reporting. Oceanic shark conservation is hampered by basic knowledge gaps about where sharks aggregate across population ranges and precisely where they overlap with fishers. Using satellite tracking data from six shark species across the North Atlantic, we show that pelagic sharks occupy predictable habitat hotspots of high space use. Movement modeling showed sharks preferred habitats characterized by strong sea surface-temperature gradients (fronts) over other available habitats. However, simultaneous Global Positioning System (GPS) tracking of the entire Spanish and Portuguese longline-vessel fishing fleets show an 80% overlap of fished areas with hotspots, potentially increasing shark susceptibility to fishing exploitation. Regions of high overlap between oceanic tagged sharks and longliners included the North Atlantic Current/Labrador Current convergence zone and the Mid-Atlantic Ridge southwest of the Azores. In these main regions, and subareas within them, shark/vessel co-occurrence was spatially and temporally persistent between years, highlighting how broadly the fishing exploitation efficiently "tracks" oceanic sharks within their space-use hotspots year-round. Given this intense focus of longliners on shark hotspots, our study argues the need for international catch limits for pelagic sharks and identifies a future role of combining fine-scale fish and vessel telemetry to inform the ocean-scale management of fisheries.

  3. Lichenoid esophagitis: clinicopathologic overlap with established esophageal lichen planus.

    Science.gov (United States)

    Salaria, Safia N; Abu Alfa, Amer K; Cruise, Michael W; Wood, Laura D; Montgomery, Elizabeth A

    2013-12-01

    Lichen planus (LP) affects mucocutaneous surfaces and is characterized by intraepithelial and lamina propria lymphocytosis and squamous cell apoptosis (Civatte bodies). Lichen planus esophagitis (LPE) is underrecognized; concurrent cutaneous disease is present in some patients, but LPE alone is more common. We diagnose patients with characteristic pathologic findings of LPE and known correlation with skin disease or immunofluorescence (IF) results as LPE but use descriptive terminology ("lichenoid esophagitis pattern" [LEP]) when confirmation is unavailable. We reviewed clinicopathologic features of patients diagnosed at our institution with LPE or LEP. There were 88 specimens with LPE or LEP from 65 patients. Most patients were female. Seventeen patients had LPE confirmed by IF. Five patients had both esophageal (1 with IF) and skin LP. Strictures were a prominent presenting feature in LPE patients, with disease distribution more frequent in the upper and lower esophagus. Dysphagia was a common reason for endoscopy in LEP patients. Rheumatologic diseases are more common in patients with LPE compared with LEP. Viral hepatitides and human immunodeficiency virus (HIV) infections are associated with LEP. We defined polypharmacy as patients taking >3 medications; this finding was present in both LPE and LEP cohorts; however, this is a prominent feature in those with established LPE. Progression to dysplasia was noted in both cohorts. About 5% of LPE patients have tandem skin manifestations. LPE is more likely than LEP to arise in women, result in stricture formation, and be associated with rheumatologic disorders and polypharmacy, whereas LEP is associated with viral hepatitis and HIV. Both can progress to neoplasia. As the risk of stricture formation is high in patients with LPE, it is worth performing pertinent IF studies to confirm LPE, although knowledge of the clinical association of LEP with viral hepatitis, HIV, and use of multiple medications is of value in

  4. Locality and topology with fat link overlap actions

    CERN Document Server

    Kovács, T G

    2003-01-01

    We study the locality and topological properties of fat link clover overlap (FCO) actions. We find that a small amount of fattening (2-4 steps of APE or 1 step of HYP) already results in greatly improved properties compared to the Wilson overlap (WO). We present a detailed study of the localisation of the FCO and its connection to the density of low modes of $A^\\dagger A$. In contrast to the Wilson overlap, on quenched gauge backgrounds we do not find any dependence of the localization of the FCO on the gauge coupling. This suggests that the FCO remains local in the continuum limit. The FCO also faithfully reproduces the zero mode wave functions of typical lattice instantons, not like the Wilson overlap. After a general discussion of different lattice definitions of the topological charge we also show that the FCO together with the Boulder charge are likely to satisfy the index theorem in the continuum limit. Finally, we present a high statistics computation of the quenched topological susceptibility with the...

  5. Anxiety, fainting and gagging in dentistry: Separate or overlapping constructs?

    NARCIS (Netherlands)

    Houtem, C.M.H.H. van

    2016-01-01

    This thesis aimed to increase the knowledge about severe forms of anxiety, gagging and fainting in dentistry and to investigate whether these phenomena are overlapping or separate constructs. In Chapter 2 a literature review of twin studies showed that the estimated heritability of specific phobias

  6. Correlation functions at small quark masses with overlap fermions

    Energy Technology Data Exchange (ETDEWEB)

    Giusti, L. [CNRS Luminy, Marseille (France). Centre de Physique Theorique; Hernandez, P. [Edificio Institutos Investigacion, Valencia (Spain). Dpto. Fisica Teorica and IFIC; Laine, M. [Bielefeld Univ. (Germany). Fakultaet fuer Physik; Pena, C.; Wennekers, J.; Wittig, H.; Weisz, P. [Max-Planck-Institut fuer Physik, Muenchen (Germany)

    2004-09-01

    We report on recent work on the determination of low-energy constants describing {delta}S = 1 weak transitions, in order to investigate the origins of the {delta}I = 1/2 rule. We focus on numerical techniques designed to enhance the statistical signal in three-point correlation functions computed with overlap fermions near the chiral limit. (orig.)

  7. Correlation functions at small quark masses with overlap fermions

    Energy Technology Data Exchange (ETDEWEB)

    Giusti, L. [Centre de Physique Theorique, CNRS Luminy, F-13288 Marseille Cedex 9 (France); Hernandez, P. [Dpto. Fisica Teorica and IFIC, Edificio Institutos Investigacion, E-46071 Valencia (Spain); Laine, M. [Faculty of Physics, University of Bielefeld, D-33501 Bielefeld (Germany); Pena, C. [Deutsches Elektronen-Synchrotron, DESY, Notkestr. 85, D-22603 Hamburg (Germany); Weisz, P. [Max-Planck-Institut fuer Physik, Foehringer Ring 6, D-80805 Munich (Germany); Wennekers, J. [Deutsches Elektronen-Synchrotron, DESY, Notkestr. 85, D-22603 Hamburg (Germany); Wittig, H. [Deutsches Elektronen-Synchrotron, DESY, Notkestr. 85, D-22603 Hamburg (Germany)

    2005-03-15

    We report on recent work on the determination of low-energy constants describing {delta}S=1 weak transitions, in order to investigate the origins of the {delta}I=1/2 rule. We focus on numerical techniques designed to enhance the statistical signal in three-point correlation functions computed with overlap fermions near the chiral limit.

  8. Correlation functions at small quark masses with overlap fermions

    CERN Document Server

    Giusti, Leonardo; Laine, Mikko; Peña, C; Weisz, P; Wennekers, J; Wittig, H

    2005-01-01

    We report on recent work on the determination of low-energy constants describing Delta{S}=1 weak transitions, in order to investigate the origins of the Delta{I}=1/2 rule. We focus on numerical techniques designed to enhance the statistical signal in three-point correlation functions computed with overlap fermions near the chiral limit.

  9. Quality Assurance in the Determination of Overlapping Peak Areas

    DEFF Research Database (Denmark)

    Christensen, L.H.; Heydorn, K.

    1987-01-01

    The ability of different computer programs to yield accurate peak areas in statistical control in the case of partially overlapping photopeaks has been tested by the Analysis of Precision. A modified Covell method, two commercially available peak-fitting programs from Nuclear Data and Ortec, and ...

  10. On the geometry of coating layers formed by overlap

    NARCIS (Netherlands)

    Ocelik, V.; Nenadl, O.; Palavra, A.; De Hosson, J. Th. M.

    2014-01-01

    A recursive model is presented for the prediction of the profile of a coating layer formed by single track overlap. A known shape of single track is assumed and on the base of simple physical assumptions the recursive sequence is deduced to construct an entire profile of such coatings. Calculations

  11. Track with overlapping links for dry coal extrusion pumps

    Science.gov (United States)

    Saunders, Timothy; Brady, John D

    2014-01-21

    A chain for a particulate material extrusion pump includes a plurality of links, each of the plurality of links having a link body and a link ledge, wherein each link ledge of the plurality of links at least partially overlaps the link body of an adjacent one of the plurality of links.

  12. Coeliac disease and autoimmune disease-genetic overlap and screening

    NARCIS (Netherlands)

    Lundin, Knut E. A.; Wijmenga, Cisca

    Coeliac disease is a treatable, gluten-induced disease that often occurs concurrently with other autoimmune diseases. In genetic studies since 2007, a partial genetic overlap between these diseases has been revealed and further insights into the pathophysiology of coeliac disease and autoimmunity

  13. Two Efficient Techniques to Find Approximate Overlaps between Sequences

    Science.gov (United States)

    2017-01-01

    The next-generation sequencing (NGS) technology outputs a huge number of sequences (reads) that require further processing. After applying prefiltering techniques in order to eliminate redundancy and to correct erroneous reads, an overlap-based assembler typically finds the longest exact suffix-prefix match between each ordered pair of the input reads. However, another trend has been evolving for the purpose of solving an approximate version of the overlap problem. The main benefit of this direction is the ability to skip time-consuming error-detecting techniques which are applied in the prefiltering stage. In this work, we present and compare two techniques to solve the approximate overlap problem. The first adapts a compact prefix tree to efficiently solve the approximate all-pairs suffix-prefix problem, while the other utilizes a well-known principle, namely, the pigeonhole principle, to identify a potential overlap match in order to ultimately solve the same problem. Our results show that our solution using the pigeonhole principle has better space and time consumption over an FM-based solution, while our solution based on prefix tree has the best space consumption between all three solutions. The number of mismatches (hamming distance) is used to define the approximate matching between strings in our work.

  14. Australia's National Research Collection: Overlap, Uniqueness, and Distribution

    Science.gov (United States)

    Genoni, Paul; Wright, Janette

    2011-01-01

    This paper reports on the results of an overlap study of Australian research library collections. The study used OCLC's WorldCat Collection Analysis software to mine data recording Australian holdings on the WorldCat database. The data is analysed according to the results obtained for six "groups" which represent various coalitions of…

  15. 9 CFR 121.4 - Overlap select agents and toxins.

    Science.gov (United States)

    2010-01-01

    ... OF AGRICULTURE VIRUSES, SERUMS, TOXINS, AND ANALOGOUS PRODUCTS; ORGANISMS AND VECTORS POSSESSION, USE...; Hendra virus; Nipah virus; Rift Valley fever virus; Venezuelan equine encephalitis virus. (c) Genetic... infectious forms of any of the overlap select agent viruses listed in paragraph (b) of this section. 4 4...

  16. 42 CFR 73.4 - Overlap select agents and toxins.

    Science.gov (United States)

    2010-10-01

    ... pseudomallei (formerly Pseudomonas pseudomallei) Hendra virus Nipah virus Rift Valley fever virus Venezuelan Equine Encephalitis virus (c) Genetic Elements, Recombinant Nucleic Acids, and Recombinant Organisms: (1) Nucleic acids that can produce infectious forms of any of the overlap select agent viruses listed...

  17. A fuzzy approach to the Weighted Overlap Dominance model

    DEFF Research Database (Denmark)

    Franco de los Rios, Camilo Andres; Hougaard, Jens Leth; Nielsen, Kurt

    2013-01-01

    in an interactive way, where input data can take the form of uniquely-graded or interval-valued information. Here we explore the Weighted Overlap Dominance (WOD) model from a fuzzy perspective and its outranking approach to decision support and multidimensional interval analysis. Firstly, imprecision measures...

  18. Two-fractal overlap time series: Earthquakes and market crashes

    Indian Academy of Sciences (India)

    Bikas K Chakrabarti; Arnab Chatterjee; Pratip Bhattacharyya

    2008-08-01

    We find prominent similarities in the features of the time series for the (model earthquakes or) overlap of two Cantor sets when one set moves with uniform relative velocity over the other and time series of stock prices. An anticipation method for some of the crashes have been proposed here, based on these observations.

  19. Market positioning: the shifting effects of niche overlap

    NARCIS (Netherlands)

    Bruggeman, J.; Grunow, D.; Leenders, M.A.A.M.; Vermeulen, I.; Kuilman, J.G.

    2012-01-01

    Organizational ecology models of market dynamics emphasize the competition-inducing role of inter-organizational niche overlap—targeting similar market niches increases competitive pressure and thus reduces organizations’ fitness. Recent studies, however, have suggested that moderate niche overlap m

  20. THE ROLE OF PREPARATION IN OVERLAPPING-TASK PERFORMANCE

    NARCIS (Netherlands)

    de Jong, Robert (Rob)

    1995-01-01

    We examined how performance of two overlapping discrete tasks is organized and controlled. Experiment 1 showed that when stimuli were presented in an unexpected order, expectations rather than actual presentation order determined the order in which the two stimuli were processed. In Experiment 2, wh

  1. Interference management with partial uplink/downlink spectrum overlap

    KAUST Repository

    Randrianantenaina, Itsikiantsoa

    2016-07-26

    Simultaneous reuse of spectral resources by uplink and downlink, denoted as in-band full duplex (FD) communication, is promoted to double the spectral efficiency when compared to its half-duplex (HD) counterpart. Interference management, however, remains challenging in FD cellular networks, especially when high disparity between uplink and downlink transmission powers exists. The uplink performance can be particularly deteriorated when operating on channels that are simultaneously occupied with downlink transmission. This paper considers a cellular wireless system with partial spectrum overlap between the downlink and uplink. The performance of the system becomes, therefore, a function of the overlap fraction, as well as the power levels of both the uplink and downlink transmissions. The paper considers the problem of maximizing an overall network utility to find the uplink/downlink transmission powers and the spectrum overlap fraction between the uplink and downlink spectrum in each cell, and proposes solving the problem using interior point method. Simulations results confirm the vulnerability of the uplink performance to the FD operation, and show the superiority of the proposed scheme over the FD and HD schemes. The results further show that explicit uplink and downlink performance should be considered for efficient design of cellular networks with overlapping uplink/downlink resources. © 2016 IEEE.

  2. Room acoustic transition time based on reflection overlap

    DEFF Research Database (Denmark)

    Jeong, Cheol-Ho; Brunskog, Jonas; Jacobsen, Finn

    2010-01-01

    A transition time is defined based on the temporal overlap of reflected pulses in room impulse responses. Assuming specular reflections only, the temporal distance between adjacent reflections, which is proportional to the volume of a room, is compared with the characteristic width of a pulse...

  3. Room acoustic transition time based on reflection overlap

    DEFF Research Database (Denmark)

    Jeong, Cheol-Ho; Brunskog, Jonas; Jacobsen, Finn

    2013-01-01

    A transition time is defined based on the temporal overlap of reflected pulses in room impulse responses. Assuming specular reflections only, the temporal distance between adjacent reflections, which is proportional to the volume of a room, is compared with the characteristic width of a pulse...

  4. [Impact of the Overlap Region Between Acoustic and Electric Stimulation].

    Science.gov (United States)

    Baumann, Uwe; Mocka, Moritz

    2017-06-01

    Patients with residual hearing in the low frequencies and ski-slope hearing loss with partial deafness at medium and high frequencies receive a cochlear implant treatment with electric-acoustic stimulation (EAS, "hybrid" stimulation). In the border region between electric and acoustic stimulation a superposition of the 2 types of stimulation is expected. The area of overlap is determined by the insertion depth of the stimulating electrode and the lower starting point of signal transmission provided by the CI speech processor. The study examined the influence of the variation of the electric-acoustic overlap area on speech perception in noise, whereby the width of the "transmission gap" between the 2 different stimulus modalities was varied by 2 different methods. The results derived from 9 experienced users of the MED-EL Duet 2 speech processor show that the electric-acoustic overlapping area and with it the crossover frequency between the acoustic part and the CI should be adjusted individually. Overall, speech reception thresholds (SRT) showed a wide variation of results in between subjects. Further studies shall investigate whether generalized procedures about the setting of the overlap between electric and acoustic stimulation are reasonable, whereby an increased number of subjects and a longer period of acclimatization prior to the conduction of hearing tests deemed necessary. © Georg Thieme Verlag KG Stuttgart · New York.

  5. Peer Network Overlap in Twin, Sibling, and Friend Dyads

    Science.gov (United States)

    McGuire, Shirley; Segal, Nancy L.

    2013-01-01

    Research suggests that sibling–peer connections are important for understanding adolescent problem behaviors. Using a novel behavioral genetic design, the current study investigated peer network overlap in 300 child–child pairs (aged 7-13 years) in 5 dyad types: monozygotic (MZ), dizygotic twins, full siblings (FSs), friend pairs, and virtual…

  6. On the geometry of coating layers formed by overlap

    NARCIS (Netherlands)

    Ocelik, V.; Nenadl, O.; Palavra, A.; De Hosson, J. Th. M.

    2014-01-01

    A recursive model is presented for the prediction of the profile of a coating layer formed by single track overlap. A known shape of single track is assumed and on the base of simple physical assumptions the recursive sequence is deduced to construct an entire profile of such coatings. Calculations

  7. Individual foraging strategies reveal niche overlap between endangered galapagos pinnipeds.

    Directory of Open Access Journals (Sweden)

    Stella Villegas-Amtmann

    Full Text Available Most competition studies between species are conducted from a population-level approach. Few studies have examined inter-specific competition in conjunction with intra-specific competition, with an individual-based approach. To our knowledge, none has been conducted on marine top predators. Sympatric Galapagos fur seals (Arctocephalus galapagoensis and sea lions (Zalophus wollebaeki share similar geographic habitats and potentially compete. We studied their foraging niche overlap at Cabo Douglas, Fernandina Island from simultaneously collected dive and movement data to examine spatial and temporal inter- and intra-specific competition. Sea lions exhibited 3 foraging strategies (shallow, intermediate and deep indicating intra-specific competition. Fur seals exhibited one foraging strategy, diving predominantly at night, between 0-80 m depth and mostly at 19-22 h. Most sea lion dives also occurred at night (63%, between 0-40 m, within fur seals' diving depth range. 34% of sea lions night dives occurred at 19-22 h, when fur seals dived the most, but most of them occurred at dawn and dusk, when fur seals exhibited the least amount of dives. Fur seals and sea lions foraging behavior overlapped at 19 and 21 h between 0-30 m depths. Sea lions from the deep diving strategy exhibited the greatest foraging overlap with fur seals, in time (19 h, depth during overlapping time (21-24 m, and foraging range (37.7%. Fur seals foraging range was larger. Cabo Douglas northwest coastal area, region of highest diving density, is a foraging "hot spot" for both species. Fur seals and sea lions foraging niche overlap occurred, but segregation also occurred; fur seals primarily dived at night, while sea lions exhibited night and day diving. Both species exploited depths and areas exclusive to their species. Niche breadth generally increases with environmental uncertainty and decreased productivity. Potential competition between these species could be greater during

  8. On Evaluation of Overlap Integrals with Noninteger Principal Quantum Numbers

    Institute of Scientific and Technical Information of China (English)

    I.I.Guseinov; B.A.Mamedov

    2004-01-01

    By use of complete orthonormal sets of ψα exponential-type orbitals (ψα-ETOs,α=1,0,-1,-2,...) the series expansion formulas for the noninteger n Slater-type orbitals (NISTOs) in terms of integer n Slater-type orbitals (ISTOs) are derived. These formulas enable us to express the overlap integrals with NISTOs through the overlap integrals over ISTOs with the same and different screening constants. By calculating concrete cases the convergence of the series for arbitrary values of noninteger principal quantum numbers and screening constants of NISTOs and internuclear distances is tested. The accuracy of the results is quite high for quantum numbers, screening constants and location of STOs.

  9. On Evaluation of Overlap Integrals with Noninteger Principal Quantum Numbers

    Institute of Scientific and Technical Information of China (English)

    I.I. Guseinov; B.A. Mamedov

    2004-01-01

    By use of complete orthonormal sets of ψα exponential-type orbitals (ψα-ETOs, α = 1, 0,-1,-2, ...) the series expansion formulas for the noninteger n* Slater-type orbitals (NISTOs) in terms of integer n Slater-type orbitals(ISTOs) are derived. These formulas enable us to express the overlap integrals with NISTOs through the overlap integrals over ISTOs with the same and different screening constants. By calculating concrete cases the convergence of the series for arbitrary values of noninteger principal quantum numbers and screening constants of NISTOs and internuclear distances is tested. The accuracy of the results is quite high for quantum numbers, screening constants and location of STOs.

  10. Hausdorff dimension of self-similar sets with overlaps

    Institute of Scientific and Technical Information of China (English)

    2009-01-01

    We provide a simple formula to compute the Hausdorff dimension of the attractor of an overlapping iterated function system of contractive similarities satisfying a certain collection of assumptions. This formula is obtained by associating a non-overlapping infinite iterated function system to an iterated function system satisfying our assumptions and using the results of Moran to compute the Hausdorff dimension of the attractor of this infinite iterated function system, thus showing that the Hausdorff dimension of the attractor of this infinite iterated function system agrees with that of the attractor of the original iterated function system. Our methods are applicable to some iterated function systems that do not satisfy the finite type condition recently introduced by Ngai and Wang.

  11. Functional overlap of the Arabidopsis leaf and root microbiota.

    Science.gov (United States)

    Bai, Yang; Müller, Daniel B; Srinivas, Girish; Garrido-Oter, Ruben; Potthoff, Eva; Rott, Matthias; Dombrowski, Nina; Münch, Philipp C; Spaepen, Stijn; Remus-Emsermann, Mitja; Hüttel, Bruno; McHardy, Alice C; Vorholt, Julia A; Schulze-Lefert, Paul

    2015-12-17

    Roots and leaves of healthy plants host taxonomically structured bacterial assemblies, and members of these communities contribute to plant growth and health. We established Arabidopsis leaf- and root-derived microbiota culture collections representing the majority of bacterial species that are reproducibly detectable by culture-independent community sequencing. We found an extensive taxonomic overlap between the leaf and root microbiota. Genome drafts of 400 isolates revealed a large overlap of genome-encoded functional capabilities between leaf- and root-derived bacteria with few significant differences at the level of individual functional categories. Using defined bacterial communities and a gnotobiotic Arabidopsis plant system we show that the isolates form assemblies resembling natural microbiota on their cognate host organs, but are also capable of ectopic leaf or root colonization. While this raises the possibility of reciprocal relocation between root and leaf microbiota members, genome information and recolonization experiments also provide evidence for microbiota specialization to their respective niche.

  12. Hausdorff dimension of self-similar sets with overlaps

    Institute of Scientific and Technical Information of China (English)

    DENG QiRong; John HARDING; HU TianYou

    2009-01-01

    We provide a simple formula to compute the Hausdorff dimension of the attractor of an overlapping iterated function system of contractive similarities satisfying a certain collection of assumptions. This formula is obtained by associating a non-overlapping infinite iterated function system to an iterated function system satisfying our assumptions and using the results of Moran to compute the Hausdorff dimension of the attractor of this infinite iterated function system,thus showing that the Hausdorff dimension of the attractor of this infinite iterated function system agrees with that of the attractor of the original iterated function system.Our methods are applicable to some iterated function systems that do not satisfy the finite type condition recently introduced by Ngai and Wang.

  13. Aceclofenac induced Stevens-Johnson/toxic epidermal necrolysis overlap syndrome

    Directory of Open Access Journals (Sweden)

    Kaderthambi Hajamohideen Nooru Ameen

    2013-01-01

    Full Text Available The purpose of this paper is to report a rare occurrence of Stevens-Johnson/Toxic epidermal necrolysis (SJS/TEN overlap syndrome after the use of aceclofenac. A 38 year old healthy adult male presented with rapidly evolving rash over face and upper body with ulceration of buccal mucosa and breathlessness after taking aceclofenac tablet. Naranjo score for this adverse drug event was six, thereby making it a probable adverse drug reaction. Despite aggressive fluid resuscitation and use of antihistamines and systemic steroids, patient′s health rapidly worsened and died within six hours of presentation. Aceclofenac induced SJS/TEN overlap is an extremely rare clinical association previously reported only once in medical literature. To the best of our knowledge, this is the first case report of such an association in the Indian population. We are presenting this case to highlight the serious adverse reactions possible from a routinely prescribed drug.

  14. Overlapping coalition formation games in wireless communication networks

    CERN Document Server

    Wang, Tianyu; Saad, Walid; Han, Zhu

    2017-01-01

    This brief introduces overlapping coalition formation games (OCF games), a novel mathematical framework from cooperative game theory that can be used to model, design and analyze cooperative scenarios in future wireless communication networks. The concepts of OCF games are explained, and several algorithmic aspects are studied. In addition, several major application scenarios are discussed. These applications are drawn from a variety of fields that include radio resource allocation in dense wireless networks, cooperative spectrum sensing for cognitive radio networks, and resource management for crowd sourcing. For each application, the use of OCF games is discussed in detail in order to show how this framework can be used to solve relevant wireless networking problems. Overlapping Coalition Formation Games in Wireless Communication Networks provides researchers, students and practitioners with a concise overview of existing works in this emerging area, exploring the relevant fundamental theories, key techniqu...

  15. On-the-fly Overlapping of Sparse Generations

    DEFF Research Database (Denmark)

    Sørensen, Chres Wiant; Roetter, Daniel Enrique Lucani; Fitzek, Frank

    2014-01-01

    Traditionally, the idea of overlapping generations in network coding research has focused on reducing the complexity of decoding large data files while maintaining the delay performance expected of a system that combines all data packets. However, the effort for encoding and decoding individual...... generations can still be quite high compared to other sparse coding approaches. This paper focuses on an inherently different approach that combines (i) sparsely coded generations configured on-the- fly based on (ii) controllable and infrequent feedback that allows the system to remove some original packets...... from the pool of packets to be mixed in the linear combinations. The latter is key to maintain a high impact of the coded packets received during the entire process while maintaining very sparsely coded generations. Interestingly, our proposed approach naturally bridges the idea of overlapping...

  16. Results from overlap valence quarks on a twisted mass sea

    CERN Document Server

    Garron, N

    2007-01-01

    We present results of lattice computations using overlap fermions on a twisted mass background. $N_f=2$ full QCD gauge configurations have been produced by the ETM Collaboration with very light pions (down to less than 300 MeV), with small lattice spacing ($a \\approx 0.09$ fm) and large volumes ($V/a^4=24^3\\times 48$). By profiting of the good chiral properties of the overlap operator for the valence quarks, it is also possible to have a precise (and unquenched) determination of those physical quantities where the chiral properties are crucial. In order to have unquenched results, we match the valence quark mass with the sea quark mass. We also perform computations with different quark masses in order to simulate (partially quenched) Strange and Charm quarks. A typical application is the computation of $B_K$, for which we present first results.

  17. DEMON: a Local-First Discovery Method for Overlapping Communities

    CERN Document Server

    Coscia, Michele; Giannotti, Fosca; Pedreschi, Dino

    2012-01-01

    Community discovery in complex networks is an interesting problem with a number of applications, especially in the knowledge extraction task in social and information networks. However, many large networks often lack a particular community organization at a global level. In these cases, traditional graph partitioning algorithms fail to let the latent knowledge embedded in modular structure emerge, because they impose a top-down global view of a network. We propose here a simple local-first approach to community discovery, able to unveil the modular organization of real complex networks. This is achieved by democratically letting each node vote for the communities it sees surrounding it in its limited view of the global system, i.e. its ego neighborhood, using a label propagation algorithm; finally, the local communities are merged into a global collection. We tested this intuition against the state-of-the-art overlapping and non-overlapping community discovery methods, and found that our new method clearly ou...

  18. Node-Centric Detection of Overlapping Communities in Social Networks

    CERN Document Server

    Cohen, Yehonatan; Rubin, Amir

    2016-01-01

    We present NECTAR, a community detection algorithm that generalizes Louvain method's local search heuristic for overlapping community structures. NECTAR chooses dynamically which objective function to optimize based on the network on which it is invoked. Our experimental evaluation on both synthetic benchmark graphs and real-world networks, based on ground-truth communities, shows that NECTAR provides excellent results as compared with state of the art community detection algorithms.

  19. Bilateral coxitis in scleroderma-polymyositis overlap syndrome

    Science.gov (United States)

    Berrada, Khadija; Abourazzak, Fatima Ezzahra; Houssaini, Ghita Sqalli; Kadi, Nadira; Tahiri, Latifa; Amrani, Kawthar; Khammar, Zineb; Lahlou, Meriam; Berrady, Rhizlane; Rabhi, Samira; Tizniti, Siham; Bono, Wafaa; Harzy, Taoufik

    2014-01-01

    Joint manifestations in scleroderma (Scl) and polymyositis (PM) are dominated by inflammatory arthralgia. Arthritis is less common and preferentially affects the hands, wrists, knees, and ankles. Involvement of the hip has been rarely reported in the literature. We report a case of coxitis diagnosed in a patient suffering from scleroderma-polymyositis overlap syndrome successfully treated by ultrasound-guided infiltration of triamcinolone hexacetonide PMID:27708891

  20. Unquenching the topological susceptibility with an overlap action

    CERN Document Server

    Kovács, T G

    2002-01-01

    We estimate the quark-mass dependence of the topological susceptibility with dynamical overlap and clover fermions. Unquenching effects on the susceptibility turn out to be well approximated by a reweighting of a quenched ensemble with a low-eigenmode truncation of the fermionic determinant. We find that it is most likely due to the explicit chiral symmetry breaking of the fermion action that present day dynamical simulations do not show the expected suppression of the topological susceptibility.

  1. Pollination niche overlap between a parasitic plant and its host.

    Science.gov (United States)

    Ollerton, Jeff; Stott, Adrian; Allnutt, Emma; Shove, Sam; Taylor, Chloe; Lamborn, Ellen

    2007-03-01

    Niche theory predicts that species which share resources should evolve strategies to minimise competition for those resources, or the less competitive species would be extirpated. Some plant species are constrained to co-occur, for example parasitic plants and their hosts, and may overlap in their pollination niche if they flower at the same time and attract the same pollinators. Using field observations and experiments between 1996 and 2006, we tested a series of hypotheses regarding pollination niche overlap between a specialist parasitic plant Orobanche elatior (Orobanchaceae) and its host Centaurea scabiosa (Asteraceae). These species flower more or less at the same time, with some year-to-year variation. The host is pollinated by a diverse range of insects, which vary in their effectiveness, whilst the parasite is pollinated by a single species of bumblebee, Bombus pascuorum, which is also an effective pollinator of the host plant. The two species therefore have partially overlapping pollination niches. These niches are not finely subdivided by differential pollen placement, or by diurnal segregation of the niches. We therefore found no evidence of character displacement within the pollination niches of these species, possibly because pollinators are not a limiting resource for these plants. Direct observation of pollinator movements, coupled with experimental manipulations of host plant inflorescence density, showed that Bombus pascuorum only rarely moves between inflorescences of the host and the parasite and therefore the presence of one plant is unlikely to be facilitating pollination in the other. This is the first detailed examination of pollination niche overlap in a plant parasite system and we suggest avenues for future research in relation to pollination and other shared interactions between parasitic plants and their hosts.

  2. Direct evaluation of overlap integrals between Slater-type-orbitals

    CERN Document Server

    Caola, Michael J

    2016-01-01

    We derive direct single-stage numerical evaluation of the electronic overlap integral between arbitrary atomic orbitals (including STOs). Integration is over cartesian co-ordinates, and replaces previous sums over 'special' functions. The results, in Mathematica 10 and Maple 18, agree with the literature to 8 digits. We briefly discuss possible use in quantum chemistry, including accuracy, algorithmic suitability and operating-system machine-implementation as an intrinsic function.

  3. Managing overlapping federal FMLA and state leave regulations.

    Science.gov (United States)

    Grebowski, Lucinda S

    2002-03-01

    The overlap between the Family and Medical Leave Act and state leave laws can create complications. Employers, particularly those with multistate operations, may wish to consider an outsourced absence management system, which can remove the burden of day-to-day administration and the need to stay abreast of changing state regulations. However, employers cannot outsource the responsibility to set broad policy toward absence management.

  4. Random matrix theory and the spectra of overlap fermions

    Energy Technology Data Exchange (ETDEWEB)

    Shcheredin, S.; Bietenholz, W.; Chiarappa, T.; Jansen, K.; Nagai, K.-I

    2004-03-01

    The application of Random Matrix Theory to the Dirac operator of QCD yields predictions for the probability distributions of the lowest eigenvalues. We measured Dirac operator spectra using massless overlap fermions in quenched QCD at topological charge {nu} = 0, {+-} 1 and {+-}2, and found agreement with those predictions -- at least for the first non-zero eigenvalue -- if the volume exceeds about (1.2 fm){sup 4}.

  5. Overlapping Domain Decomposition Methods with FreeFem++

    OpenAIRE

    Jolivet, Pierre; Hecht, Frédéric; Nataf, Frédéric; Prud'Homme, Christophe

    2012-01-01

    International audience; In this note, the performances of a framework for two-level overlapping domain decomposition methods are assessed. Numerical experiments are run on Curie, a Tier-0 system for PRACE, for two second order elliptic PDE with highly heterogeneous coefficients: a scalar equation of diffusivity and the system of linear elasticity. Those experiments yield systems with up to ten billion unknowns in 2D and one billion unknowns in 3D, solved on few thousands cores.

  6. Population ageing, longevity and migration: an overlapping generations approach

    OpenAIRE

    Melindi Ghidi, Paolo

    2008-01-01

    The silent demographic revolution characterizing the main industrialized countries is an unavoidable factor which has major economic, social, cultural and psychological implications. This thesis studies the main consequences of population ageing and the connections with the phenomenon of migration, The theoretical analysis is developed using Overlapping Generations Models (OLG). The thesis is divided in the following four chapters: 1) “A Model for Determining Consumption and So...

  7. Diabetes and Alzheimer Disease, Two Overlapping Pathologies with the Same Background: Oxidative Stress

    Directory of Open Access Journals (Sweden)

    Sergio Rosales-Corral

    2015-01-01

    Full Text Available There are several oxidative stress-related pathways interconnecting Alzheimer’s disease and type II diabetes, two public health problems worldwide. Coincidences are so compelling that it is attractive to speculate they are the same disorder. However, some pathological mechanisms as observed in diabetes are not necessarily the same mechanisms related to Alzheimer’s or the only ones related to Alzheimer’s pathology. Oxidative stress is inherent to Alzheimer’s and feeds a vicious cycle with other key pathological features, such as inflammation and Ca2+ dysregulation. Alzheimer’s pathology by itself may lead to insulin resistance in brain, insulin resistance being an intervening variable in the neurodegenerative disorder. Hyperglycemia and insulin resistance from diabetes, overlapping with the Alzheimer’s pathology, aggravate the progression of the neurodegenerative processes, indeed. But the same pathophysiological background is behind the consequences, oxidative stress. We emphasize oxidative stress and its detrimental role in some key regulatory enzymes.

  8. Diabetes and Alzheimer Disease, Two Overlapping Pathologies with the Same Background: Oxidative Stress

    Science.gov (United States)

    Rosales-Corral, Sergio; Tan, Dun-Xian; Manchester, Lucien; Reiter, Russel J.

    2015-01-01

    There are several oxidative stress-related pathways interconnecting Alzheimer's disease and type II diabetes, two public health problems worldwide. Coincidences are so compelling that it is attractive to speculate they are the same disorder. However, some pathological mechanisms as observed in diabetes are not necessarily the same mechanisms related to Alzheimer's or the only ones related to Alzheimer's pathology. Oxidative stress is inherent to Alzheimer's and feeds a vicious cycle with other key pathological features, such as inflammation and Ca2+ dysregulation. Alzheimer's pathology by itself may lead to insulin resistance in brain, insulin resistance being an intervening variable in the neurodegenerative disorder. Hyperglycemia and insulin resistance from diabetes, overlapping with the Alzheimer's pathology, aggravate the progression of the neurodegenerative processes, indeed. But the same pathophysiological background is behind the consequences, oxidative stress. We emphasize oxidative stress and its detrimental role in some key regulatory enzymes. PMID:25815110

  9. Progress Report

    DEFF Research Database (Denmark)

    Duer, Karsten

    1999-01-01

    Progress report describing the work carried out by the Danish participant in the ALTSET project in the period January 1999 to July 1999.......Progress report describing the work carried out by the Danish participant in the ALTSET project in the period January 1999 to July 1999....

  10. How do keratinizing disorders and blistering disorders overlap?

    Science.gov (United States)

    Hamada, Takahiro; Tsuruta, Daisuke; Fukuda, Shunpei; Ishii, Norito; Teye, Kwesi; Numata, Sanae; Dainichi, Teruki; Karashima, Tadashi; Ohata, Chika; Furumura, Minao; Hashimoto, Takashi

    2013-02-01

    Inherited keratinizing disorders are caused by mutations in the genes encoding cornified cell envelope proteins, enzymes and their inhibitors, adhesion molecules, cytoskeletal proteins and others in the epidermis. These molecules are known to regulate differentiation, proliferation and cell adhesions. Intriguingly, some keratinizing disorders show blistering skin lesions, while some inherited blistering disorders show abnormal keratinization. Therefore, hereditary keratinizing and blistering diseases are closely related and show overlapping genetic backgrounds. In this review, we overviewed keratinizing and blistering disorders in terms of overlapping of the two disease groups. Gene mutations in desmosomal components cause striate keratoderma, Naxos disease, epidermolytic palmoplantar keratoderma and plakophilin deficiency, which first show skin fragility and blisters and later hyperkeratosis. Gene mutations in hemidesmosomal components cause various forms of epidermolysis bullosa, some of which show hyperkeratosis on the nails, palms and soles, in addition to blister formation. Diseases with gene mutations in calcium pump proteins are Darier disease and Hailey-Hailey disease, which show clinicopathological overlaps and develop both keratinizing and blistering skin lesions. Finally, gene mutations in epidermal keratins cause epidermolysis bullosa simplex, epidermolytic ichthyosis, superficial epidermolytic ichthyosis, epidermolytic palmoplantar keratoderma and pachyonychia congenita/focal palmoplantar keratoderma, which show thickening of the palms and soles with underlying blister formation. In general, responsible proteins for diseases developing both keratinizing and blistering conditions are adhesion molecules, calcium pump proteins and keratins, but not connexins, cornified cell envelop proteins, enzymes or inhibitors. It is still unknown how particular keratinizing diseases develop blisters and vice versa. © 2012 John Wiley & Sons A/S.

  11. Saccade plan overlap and cancellation during free viewing.

    Science.gov (United States)

    Wu, Esther X W; Chua, Fook-Kee; Yen, Shih-Cheng

    2016-10-01

    In the current study, we examined how the saccadic system responds when visual information changes dynamically in our environment. Previous studies, using the double-step task, have shown that (a) saccade plans could overlap, such that saccade preparation to an object started even while the saccade preparation to another object was ongoing, and (b) saccade plans could be cancelled before they were completed. In these studies, saccade targets were restricted to a few, experimenter-defined locations. Here, we examined whether saccade plan overlap and cancellation mechanisms could be observed in free-viewing conditions. For each trial, we constructed sets of two images, each containing five objects. All objects have unique positions. Image 1 was presented for several fixations, before Image 2 was presented during a fixation, presumably while a saccade plan to an object in Image 1 was ongoing. There were two crucial findings: (a) First, the saccade immediately following the transition was sometimes executed towards objects in Image 2, and not an object in Image 1, suggesting that the earlier saccade plan to an Image 1 object had been cancelled. Second, analysis of the temporal data also suggested that preparation of the first post-transition saccade started before an earlier saccade plan to an Image 1 object was executed, implying that saccade plans overlapped.

  12. Statistically validated network of portfolio overlaps and systemic risk.

    Science.gov (United States)

    Gualdi, Stanislao; Cimini, Giulio; Primicerio, Kevin; Di Clemente, Riccardo; Challet, Damien

    2016-12-21

    Common asset holding by financial institutions (portfolio overlap) is nowadays regarded as an important channel for financial contagion with the potential to trigger fire sales and severe losses at the systemic level. We propose a method to assess the statistical significance of the overlap between heterogeneously diversified portfolios, which we use to build a validated network of financial institutions where links indicate potential contagion channels. The method is implemented on a historical database of institutional holdings ranging from 1999 to the end of 2013, but can be applied to any bipartite network. We find that the proportion of validated links (i.e. of significant overlaps) increased steadily before the 2007-2008 financial crisis and reached a maximum when the crisis occurred. We argue that the nature of this measure implies that systemic risk from fire sales liquidation was maximal at that time. After a sharp drop in 2008, systemic risk resumed its growth in 2009, with a notable acceleration in 2013. We finally show that market trends tend to be amplified in the portfolios identified by the algorithm, such that it is possible to have an informative signal about institutions that are about to suffer (enjoy) the most significant losses (gains).

  13. STITCHER 2.0: primer design for overlapping PCR applications

    Science.gov (United States)

    O’Halloran, Damien M.; Uriagereka-Herburger, Isabel; Bode, Katrin

    2017-01-01

    Overlapping polymerase chain reaction (PCR) is a common technique used by researchers in very diverse fields that enables the user to ‘stitch’ individual pieces of DNA together. Previously, we have reported a web based tool called STITCHER that provides a platform for researchers to automate the design of primers for overlapping PCR applications. Here we present STITCHER 2.0, which represents a substantial update to STITCHER. STITCHER 2.0 is a newly designed web tool that automates the design of primers for overlapping PCR. Unlike STITCHER, STITCHER 2.0 considers diverse algorithmic parameters, and returns multiple result files that include a facility for the user to draw their own primers as well as comprehensive visual guides to the user’s input, output, and designed primers. These result files provide greater control and insight during experimental design and troubleshooting. STITCHER 2.0 is freely available to all users without signup or login requirements and can be accessed at the following webpage: www.ohalloranlab.net/STITCHER2.html. PMID:28358011

  14. Securely measuring the overlap between private datasets with cryptosets.

    Science.gov (United States)

    Swamidass, S Joshua; Matlock, Matthew; Rozenblit, Leon

    2015-01-01

    Many scientific questions are best approached by sharing data--collected by different groups or across large collaborative networks--into a combined analysis. Unfortunately, some of the most interesting and powerful datasets--like health records, genetic data, and drug discovery data--cannot be freely shared because they contain sensitive information. In many situations, knowing if private datasets overlap determines if it is worthwhile to navigate the institutional, ethical, and legal barriers that govern access to sensitive, private data. We report the first method of publicly measuring the overlap between private datasets that is secure under a malicious model without relying on private protocols or message passing. This method uses a publicly shareable summary of a dataset's contents, its cryptoset, to estimate its overlap with other datasets. Cryptosets approach "information-theoretic" security, the strongest type of security possible in cryptography, which is not even crackable with infinite computing power. We empirically and theoretically assess both the accuracy of these estimates and the security of the approach, demonstrating that cryptosets are informative, with a stable accuracy, and secure.

  15. STITCHER 2.0: primer design for overlapping PCR applications.

    Science.gov (United States)

    O'Halloran, Damien M; Uriagereka-Herburger, Isabel; Bode, Katrin

    2017-03-30

    Overlapping polymerase chain reaction (PCR) is a common technique used by researchers in very diverse fields that enables the user to 'stitch' individual pieces of DNA together. Previously, we have reported a web based tool called STITCHER that provides a platform for researchers to automate the design of primers for overlapping PCR applications. Here we present STITCHER 2.0, which represents a substantial update to STITCHER. STITCHER 2.0 is a newly designed web tool that automates the design of primers for overlapping PCR. Unlike STITCHER, STITCHER 2.0 considers diverse algorithmic parameters, and returns multiple result files that include a facility for the user to draw their own primers as well as comprehensive visual guides to the user's input, output, and designed primers. These result files provide greater control and insight during experimental design and troubleshooting. STITCHER 2.0 is freely available to all users without signup or login requirements and can be accessed at the following webpage: www.ohalloranlab.net/STITCHER2.html.

  16. Segmentation, Inference and Classification of Partially Overlapping Nanoparticles

    KAUST Repository

    Chiwoo Park,

    2013-03-01

    This paper presents a method that enables automated morphology analysis of partially overlapping nanoparticles in electron micrographs. In the undertaking of morphology analysis, three tasks appear necessary: separate individual particles from an agglomerate of overlapping nano-objects; infer the particle\\'s missing contours; and ultimately, classify the particles by shape based on their complete contours. Our specific method adopts a two-stage approach: the first stage executes the task of particle separation, and the second stage conducts simultaneously the tasks of contour inference and shape classification. For the first stage, a modified ultimate erosion process is developed for decomposing a mixture of particles into markers, and then, an edge-to-marker association method is proposed to identify the set of evidences that eventually delineate individual objects. We also provided theoretical justification regarding the separation capability of the first stage. In the second stage, the set of evidences become inputs to a Gaussian mixture model on B-splines, the solution of which leads to the joint learning of the missing contour and the particle shape. Using twelve real electron micrographs of overlapping nanoparticles, we compare the proposed method with seven state-of-the-art methods. The results show the superiority of the proposed method in terms of particle recognition rate.

  17. A Convenient Formalism for Auger and Autoionization of Overlapping Resonances

    Science.gov (United States)

    Tabanli, M. M.; Peacher, J. L.; Madison, D. H.

    2003-05-01

    Following the works of Fano [1], Balashov [2], and Davis and Feldkamp [3], we have developed a general formalism for cross sections near overlapping autoionizing resonances [4]. We show that the effect of the interaction between different resonances can be treated as a correction factor to the isolated resonances treatment of the problem. We present a simple correction factor, which can be calculated using only the energy and the width of the resonances. We have applied our approach to four physically important cases as a representative of two overlapping resonances. Our results indicate that even in the case where the resonances are only somewhat overlapping, the correction factor makes a considerable contribution and the agreement between the relative experimental cross section and the isolated resonances calculation does not necessarily imply that the resonance-resonance interactions are negligible. [1] U. Fano, Phys. Rev. 124,.1866 (1961) [2] V. V. Balashov, S. S. Lipovetsky and V. S. Senashenko, Sov. Phys. JETP 36, 858 (1973) [3] L. C. Davis and L. A. Feldkamp, Phys. Rev B. 15, 2961 (1977) [4] M. M. Tabanli, J. L. Peacher and D. H. Madison, J. Phys. B 36, 217 (2003)

  18. A stochastic model for detecting overlapping and hierarchical community structure.

    Directory of Open Access Journals (Sweden)

    Xiaochun Cao

    Full Text Available Community detection is a fundamental problem in the analysis of complex networks. Recently, many researchers have concentrated on the detection of overlapping communities, where a vertex may belong to more than one community. However, most current methods require the number (or the size of the communities as a priori information, which is usually unavailable in real-world networks. Thus, a practical algorithm should not only find the overlapping community structure, but also automatically determine the number of communities. Furthermore, it is preferable if this method is able to reveal the hierarchical structure of networks as well. In this work, we firstly propose a generative model that employs a nonnegative matrix factorization (NMF formulization with a l(2,1 norm regularization term, balanced by a resolution parameter. The NMF has the nature that provides overlapping community structure by assigning soft membership variables to each vertex; the l(2,1 regularization term is a technique of group sparsity which can automatically determine the number of communities by penalizing too many nonempty communities; and hence the resolution parameter enables us to explore the hierarchical structure of networks. Thereafter, we derive the multiplicative update rule to learn the model parameters, and offer the proof of its correctness. Finally, we test our approach on a variety of synthetic and real-world networks, and compare it with some state-of-the-art algorithms. The results validate the superior performance of our new method.

  19. Strong genetic overlap between executive functions and intelligence.

    Science.gov (United States)

    Engelhardt, Laura E; Mann, Frank D; Briley, Daniel A; Church, Jessica A; Harden, K Paige; Tucker-Drob, Elliot M

    2016-09-01

    Executive functions (EFs) are cognitive processes that control, monitor, and coordinate more basic cognitive processes. EFs play instrumental roles in models of complex reasoning, learning, and decision making, and individual differences in EFs have been consistently linked with individual differences in intelligence. By middle childhood, genetic factors account for a moderate proportion of the variance in intelligence, and these effects increase in magnitude through adolescence. Genetic influences on EFs are very high, even in middle childhood, but the extent to which these genetic influences overlap with those on intelligence is unclear. We examined genetic and environmental overlap between EFs and intelligence in a racially and socioeconomically diverse sample of 811 twins ages 7 to 15 years (M = 10.91, SD = 1.74) from the Texas Twin Project. A general EF factor representing variance common to inhibition, switching, working memory, and updating domains accounted for substantial proportions of variance in intelligence, primarily via a genetic pathway. General EF continued to have a strong, genetically mediated association with intelligence even after controlling for processing speed. Residual variation in general intelligence was influenced only by shared and nonshared environmental factors, and there remained no genetic variance in general intelligence that was unique of EF. Genetic variance independent of EF did remain, however, in a more specific perceptual reasoning ability. These results provide evidence that genetic influences on general intelligence are highly overlapping with those on EF. (PsycINFO Database Record

  20. The Evaluation of Diastolic Hypertention in Sleep Overlap Syndrome

    Directory of Open Access Journals (Sweden)

    Fariba Rezaeetalab

    2015-01-01

    Full Text Available Introduction: The overlap syndrome, consisting ofobstructive sleep apnea hypopnea syndrome (OSAHS and chronic obstructvie pulmonary disease (COPD is a major problem in COPD patients. OSHAS corresponds to the likelihood of systemic hypertension.The present study was aimed to evaluate the association between apnea-hypopnea index and diastolic blood presssure (DBP in overlap  patients. Materials and Methods: We conducted a cross-sectional study involving overnight polysomnography after measurment of resting diastolic blood pressure (DBP in patients with overlap syndrome in Sleep Laboartory of Imam Reza Hospital, Mashhad, Iran from October 2011 to December 2012. Participants were divided into four subgroups regarding to their Apnea-Hypopnea Index (AHI (AHI 30.Descriptive statistics included age, body mass index (BMI, OSA, Apnea-Hypopnea Index (AHI, DBP, and neck circumference. Results: Sixty participants ranged between from 46 to 82 years old were entered into this study. There was statistically significant difference in mean DBP among different AHI subgroups (80±0.50, 95±0.60, and 105±0.65, respectively (p

  1. Variables e impacto persuasivo del overlapping o encabalgamiento audiovual

    Directory of Open Access Journals (Sweden)

    Fernando Morales

    2011-05-01

    Full Text Available Normal 0 21 false false false ES X-NONE X-NONE El overlapping es una técnica de montaje audiovisual donde el sonido se adelanta intencionalmente a la imagen durante el ensamble de dos secuencias. Este procedimiento tiene la finalidad de suavizar la transición de las secuencias vinculadas o, en cambio, hacer notar al máximo posible sus diferencias para provocar impresión de sorpresa. Pese a lo extensivo del uso de este procedimiento en el ámbito fílmico no existe investigación empírica que pueda validar dichas funciones o efectos. En el presente artículo se efectúa un estudio de cuatro variables presentes durante la ocurrencia del overlapping y, finalmente una prueba de recepción controlada. Los resultados indican que los incrementos de la intensidad del sonido y la imagen despiertan una impresión de sorpresa elevada en los receptores, mientras que los overlappings con valores más uniformes de estas variables fueron calificados mayoritariamente como no sorprendentes.

  2. Overlap between empathy, teamwork and integrative approach to patient care.

    Science.gov (United States)

    Hojat, Mohammadreza; Bianco, Joseph A; Mann, Douglas; Massello, David; Calabrese, Leonard H

    2014-10-14

    Abstract Background: Empathy, teamwork and an integrative approach to patient care share common denominators such as interpersonal skills and understanding patients' concerns. Thus, a significant overlap among measures of empathy, teamwork and integrative approach to patient care is expected. Aim: This study examined the magnitude of overlap (shared variance) among three measures of empathy, teamwork and an integrative approach to patient care. Methods: Three-hundred seventy-three medical students completed the Jefferson Scale of Empathy (JSE), the Jefferson Scale of Attitudes toward Physician-Nurse Collaboration (JSAPNC) and Integrative Patient Care (IPC). Results: Significant overlaps were found among the three measures (p < 0.01), ranging from 13% (r = 0.36), between JSAPNC and IPC, to 18% (r = 0.42), between JSE and JSAPNC, and 30% (r = 0.55) between JSE and IPC for the total sample. Pattern of findings was similar for men and women. In a multiple regression model, a significant multiple correlation (R = 0.60, p < 0.01) was obtained in correlating scores on the JSE with the JSAPNC, and IPC scores, controlling for gender effect (men = 0 and women = 1). Conclusions: The significant links between empathy, teamwork and IPC support the common denominator assumption. The findings that IPC shares common variance with empathy and teamwork have implications for medical education curriculum, suggesting that implementation of integrative patient care can improve empathic engagement in patient care and orientation toward teamwork.

  3. Overlapping and non-overlapping brain regions for theory of mind and self reflection in individual subjects.

    Science.gov (United States)

    Saxe, Rebecca; Moran, Joseph M; Scholz, Jonathan; Gabrieli, John

    2006-12-01

    When subjects are required to reason about someone's false belief, a consistent pattern of brain regions are recruited including the medial prefrontal cortex, medial precuneus and bilateral temporo-parietal junction. Previous group analyses suggest that the two medial regions, but not the lateral regions, are also recruited when subjects engage in self-reflection. The current study directly compared the results of the 'false belief' and 'self' tasks in individual subjects. Consistent with previous reports, the medial prefrontal and medial precuneus regions recruited by the two tasks significantly overlap in individual subjects, although there was also evidence for non-overlapping voxels in medial regions. The temporo-parietal regions are only recruited for the 'theory of mind' task. Six possible models of the relationship between theory of mind, self-reflection and autobiographical memory, all consistent with both neurobiological and developmental evidence to date, are discussed.

  4. A novel approach for efficient extrication of overlapping chromosomes in automated karyotyping.

    Science.gov (United States)

    Munot, Mousami V; Mukherjee, Jayanta; Joshi, Madhuri

    2013-12-01

    Since the introduction of the automated karyotyping systems, segmentation and classification of touching and overlapping chromosomes in the metaphase images are major challenges. The earlier reported techniques for disentangling the chromosome overlaps have limited success and use only color information in case of multispectral imaging. Most of them are restricted to separation of single overlap of two chromosomes. This paper introduces a novel algorithm to extricate overlapping chromosomes in a metaphase image. The proposed technique uses Delaunay triangulation to automatically identify the number of overlaps in a cluster followed by the detection of the appropriate cut-points. The banding information on the overlapped region further resolves the set of overlapping chromosomes with the identified cut-points. The proposed algorithm has been tested with four data sets of 60 overlapping cases, obtained from publically available databases and private genetic labs. The experimental results provide an overall accuracy of 75–100 % for resolving the cluster of 1–6 overlaps.

  5. The E2F family: specific functions and overlapping interests

    DEFF Research Database (Denmark)

    Attwooll, Claire; Lazzerini Denchi, Eros; Helin, Kristian

    2004-01-01

    The E2F transcription factors are key regulators of cell cycle progression and the E2F field has made rapid advances since its advent in 1986. Yet, while our understanding of the roles and functions of the E2F family has made enormous progress, with each discovery new questions arise. In this rev...

  6. Progressive Business

    DEFF Research Database (Denmark)

    Christiansen, Christian O.

    2016-01-01

    Guest Post to the Society for U.S. Intellectual History Blog. Brief introduction to the book Progressive Business: An Intellectual History of the Role of Business in American Society, Oxford U.P., 2015.......Guest Post to the Society for U.S. Intellectual History Blog. Brief introduction to the book Progressive Business: An Intellectual History of the Role of Business in American Society, Oxford U.P., 2015....

  7. Analysis of the structural parameters that influence gas production from the Devonian shale. Annual progress report, 1979-1980. Volume II. Data repository and reports published during fiscal year 1979-1980: regional structure, surface structure, surface fractures, hydrology

    Energy Technology Data Exchange (ETDEWEB)

    Negus-De Wys, J.; Dixon, J. M.; Evans, M. A.; Lee, K. D.; Ruotsala, J. E.; Wilson, T. H.; Williams, R. T.

    1980-10-01

    This volume comprises appendices giving regional structure data, surface structure data, surface fracture data, and hydrology data. The fracture data covers oriented Devonian shale cores from West Virginia, Ohio, Virginia, Pennsylvania, and Kentucky. The subsurface structure of the Eastern Kentucky gas field is also covered. (DLC)

  8. Recombining overlapping BACs into a single larger BAC

    Directory of Open Access Journals (Sweden)

    Huxley Clare

    2004-01-01

    Full Text Available Abstract Background BAC clones containing entire mammalian genes including all the transcribed region and long range controlling elements are very useful for functional analysis. Sequenced BACs are available for most of the human and mouse genomes and in many cases these contain intact genes. However, large genes often span more than one BAC, and single BACs covering the entire region of interest are not available. Here we describe a system for linking two or more overlapping BACs into a single clone by homologous recombination. Results The method was used to link a 61-kb insert carrying the final 5 exons of the human CFTR gene onto a 160-kb BAC carrying the first 22 exons. Two rounds of homologous recombination were carried out in the EL350 strain of bacteria which can be induced for the Red genes. In the first round, the inserts of the two overlapping BACs were subcloned into modified BAC vectors using homologous recombination. In the second round, the BAC to be added was linearised with the very rare-cutting enzyme I-PpoI and electroporated into recombination efficient EL350 bacteria carrying the other BAC. Recombined BACs were identified by antibiotic selection and PCR screening and 10% of clones contained the correctly recombined 220-kb BAC. Conclusion The system can be used to link the inserts from any overlapping BAC or PAC clones. The original orientation of the inserts is not important and desired regions of the inserts can be selected. The size limit for the fragments recombined may be larger than the 61 kb used here and multiple BACs in a contig could be combined by alternating use of the two pBACLink vectors. This system should be of use to many investigators wishing to carry out functional analysis on large mammalian genes which are not available in single BAC clones.

  9. Handover Incentives for Self-Interested WLANs with Overlapping Coverage

    DEFF Research Database (Denmark)

    Fafoutis, Xenofon; Siris, Vasilios A.

    2012-01-01

    We consider an environment where self-interested IEEE 802.11 Wireless Local Area Networks (WLANs) have overlapping coverage, and investigate the incentives that can trigger handovers between the WLANs. Our focus is on the incentives for supporting handovers due solely to the improved performance...... for all wireless networks. Such incentives arise due to a well-known property of 802.11 networks, where low rate users that send traffic significantly degrade the performance of high rate users that are associated with the same access point. A key difference of this paper compared to other works...

  10. Hadron Masses and Quark Condensate from Overlap Fermions

    Science.gov (United States)

    Liu, K. F.; Dong, S. J.; Lee, F. X.; Zhang, J. B.

    We present results on hadron masses and quark condensate from Neuberger's overlap fermion. The scaling and chiral properties and finite volume effects from this new Dirac operator are studied. We find that the generalized Gell-Mann-Oakes-Renner relation is well satisfied down to the physical u and d quark mass range. We find that in the range of the lattice spacing we consider, the π and ϱ masses at a fixed mπ/ mϱ ratio have weak O( a2) dependence.

  11. A simple derivation of the Overlap Dirac Operator

    CERN Document Server

    Fosco, C D; Neuberger, H

    2007-01-01

    We derive the vector-like four dimensional overlap Dirac operator starting from a five dimensional Dirac action in the presence of a delta-function space-time defect. The effective operator is obtained by first integrating out all the fermionic modes in the fixed gauge background, and then identifying the contribution from the localized modes as the determinant of an operator in one dimension less. We define physically relevant degrees of freedom on the defect by introducing an auxiliary defect-bound fermion field and integrating out the original five dimensional bulk field.

  12. Overlapping image segmentation for context-dependent anomaly detection

    Science.gov (United States)

    Theiler, James; Prasad, Lakshman

    2011-06-01

    The challenge of finding small targets in big images lies in the characterization of the background clutter. The more homogeneous the background, the more distinguishable a typical target will be from its background. One way to homogenize the background is to segment the image into distinct regions, each of which is individually homogeneous, and then to treat each region separately. In this paper we will report on experiments in which the target is unspecified (it is an anomaly), and various segmentation strategies are employed, including an adaptive hierarchical tree-based scheme. We find that segmentations that employ overlap achieve better performance in the low false alarm rate regime.

  13. Nucleon axial and tensor charges with dynamical overlap quarks

    CERN Document Server

    Yamanaka, N; Hashimoto, S; Kaneko, T

    2015-01-01

    We report on our calculation of the nucleon axial and tensor charges in 2+1-flavor QCD with dynamical overlap quarks. Gauge ensembles are generated at a single lattice spacing 0.12 fm and at a strange quark mass close to its physical value. We employ the all-mode-averaging technique to calculate the relevant nucleon correlation functions, and the disconnected quark loop is efficiently calculated by using the all-to-all quark propagator. We present our preliminary results for the isoscalar and isovector charges obtained at pion masses $m_\\pi$ = 450 and 540 MeV.

  14. Scalar condensate and light quark masses from overlap fermions

    OpenAIRE

    Hernandez, Pilar; Jansen, Karl; Lellouch, Laurent; Wittig, Hartmut

    2001-01-01

    We have studied pseudoscalar correlation functions computed using the overlap operator. Within the accuracy of our calculation we find that the quark mass dependence agrees with the prediction of lowest-order Chiral Perturbation Theory (ChPT) for quark masses in the range of m ~ m_s/2-2m_s. We present the results of an analysis which assumes lowest-order ChPT to be valid to extract the low-energy constants Sigma and f_P, as well as the strange quark mass. Non-perturbative renormalization is i...

  15. FREQUENCY OVERLAPPED SIGNAL IDENTIFICATION USING BLIND SOURCE SEPARATION

    Institute of Scientific and Technical Information of China (English)

    WANG Junfeng; SHI Tielin; HE Lingsong; YANG Shuzi

    2006-01-01

    The concepts, principles and usages of principal component analysis (PCA) and independent component analysis (ICA) are interpreted. Then the algorithm and methodology of ICA-based blind source separation (BSS), in which the pre-whitened based on PCA for observed signals is used, are researched. Aiming at the mixture signals, whose frequency components are overlapped by each other, a simulation of BSS to separate this type of mixture signals by using theory and approach of BSS has been done. The result shows that the BSS has some advantages what the traditional methodology of frequency analysis has not.

  16. Chaotic scattering in the regime of weakly overlapping resonances.

    Science.gov (United States)

    Dietz, B; Friedrich, T; Harney, H L; Miski-Oglu, M; Richter, A; Schäfer, F; Weidenmüller, H A

    2008-11-01

    We measure the transmission and reflection amplitudes of microwaves in a resonator coupled to two antennas at room temperature in the regime of weakly overlapping resonances and in a frequency range of 3-16GHz . Below 10.1GHz the resonator simulates a chaotic quantum system. The distribution of the elements of the scattering matrix S is not Gaussian. The Fourier coefficients of S are used for a best fit of the autocorrelation function of S to a theoretical expression based on random-matrix theory. We find very good agreement below but not above 10.1GHz .

  17. Cumulative overlap distribution function in realistic spin glasses

    Science.gov (United States)

    Billoire, A.; Maiorano, A.; Marinari, E.; Martin-Mayor, V.; Yllanes, D.

    2014-09-01

    We use a sample-dependent analysis, based on medians and quantiles, to analyze the behavior of the overlap probability distribution of the Sherrington-Kirkpatrick and 3D Edwards-Anderson models of Ising spin glasses. We find that this approach is an effective tool to distinguish between replica symmetry breaking-like and droplet-like behavior of the spin-glass phase. Our results are in agreement with a replica symmetry breaking-like behavior for the 3D Edwards-Anderson model.

  18. Diquark correlations in baryons on the lattice with overlap quarks

    Energy Technology Data Exchange (ETDEWEB)

    Babich, R.; Howard, J.; Rebbi, C. [Boston Univ., MA (United States). Dept. of Physics; Garron, N. [Deutsches Elektronen-Synchrotron (DESY), Zeuthen (Germany); Hoelbling, C. [Wuppertal Univ. (Gesamthochschule) (Germany). Fachbereich Physik; Lellouch, L. [CNRS Luminy, Marseille (France). Centre de Physique Theorique]|[Wuppertal Univ. (Gesamthochschule) (Germany). Fachbereich Physik

    2007-01-15

    We evaluate baryon wave functions in both the Coulomb and Landau gauge in lattice QCD. These are constructed from quark propagators calculated with the overlap Dirac operator on quenched gauge configurations at {beta}=6. By comparing baryon states that differ in their diquark content, we find evidence for enhanced correlation in the scalar diquark channel, as favored by quark models. We also summarize earlier results for diquark masses in the Landau gauge, casting them in a form more easily compared with subsequent studies. (orig.)

  19. Group Lasso with Overlaps: the Latent Group Lasso approach

    CERN Document Server

    Obozinski, Guillaume; Vert, Jean-Philippe

    2011-01-01

    We study a norm for structured sparsity which leads to sparse linear predictors whose supports are unions of prede ned overlapping groups of variables. We call the obtained formulation latent group Lasso, since it is based on applying the usual group Lasso penalty on a set of latent variables. A detailed analysis of the norm and its properties is presented and we characterize conditions under which the set of groups associated with latent variables are correctly identi ed. We motivate and discuss the delicate choice of weights associated to each group, and illustrate this approach on simulated data and on the problem of breast cancer prognosis from gene expression data.

  20. Area G perimeter surface-soil and single-stage water sampling: Environmental surveillance for fiscal year 94, Group ESH-19. Progress report

    Energy Technology Data Exchange (ETDEWEB)

    Conrad, R.; Childs, M.; Lyons, C.R.; Coriz, F.

    1996-08-01

    ESH-19 personnel collected soil and single-stage water samples around the perimeter of Area G at Los Alamos National Laboratory during FY94 to characterize possible contaminant movement out of Area G through surface-water and sediment runoff. These samples were analyzed for tritium, total uranium, isotopic plutonium, americium-241, and cesium-137. Ten metals were also analyzed on selected soils using analytical laboratory techniques. All radiochemical data are compared with analogous samples collected during FY 93 and reported in LA-12986. Baseline concentrations for future disposal operations were established for metals and radionuclides by a sampling program in the proposed Area G Expansion Area. Considering the amount of radioactive waste that has been disposed at Area G, there is evidence of only low concentrations of radionuclides on perimeter surface soils. Consequently, little radioactivity is leaving the confines of Area G via the surface water runoff pathway.

  1. Non-random retention of protein-coding overlapping genes in Metazoa

    Directory of Open Access Journals (Sweden)

    Bork Peer

    2008-04-01

    Full Text Available Abstract Background Although the overlap of transcriptional units occurs frequently in eukaryotic genomes, its evolutionary and biological significance remains largely unclear. Here we report a comparative analysis of overlaps between genes coding for well-annotated proteins in five metazoan genomes (human, mouse, zebrafish, fruit fly and worm. Results For all analyzed species the observed number of overlapping genes is always lower than expected assuming functional neutrality, suggesting that gene overlap is negatively selected. The comparison to the random distribution also shows that retained overlaps do not exhibit random features: antiparallel overlaps are significantly enriched, while overlaps lying on the same strand and those involving coding sequences are highly underrepresented. We confirm that overlap is mostly species-specific and provide evidence that it frequently originates through the acquisition of terminal, non-coding exons. Finally, we show that overlapping genes tend to be significantly co-expressed in a breast cancer cDNA library obtained by 454 deep sequencing, and that different overlap types display different patterns of reciprocal expression. Conclusion Our data suggest that overlap between protein-coding genes is selected against in Metazoa. However, when retained it may be used as a species-specific mechanism for the reciprocal regulation of neighboring genes. The tendency of overlaps to involve non-coding regions of the genes leads to the speculation that the advantages achieved by an overlapping arrangement may be optimized by evolving regulatory non-coding transcripts.

  2. Workshop on ’Recent Progress in Surface and Volume Scattering’ Held in Madrid, Spain on 14-16 September 1988

    Science.gov (United States)

    1988-09-16

    Interes Publico, Av. Espinoza No. 843, Apdo. Postal 2732, Ensenada, Baja California, Mexico RIGOROUS SOLUTION OF PROBLEMS OF SCATTERING BY LARGE SIZE...CONDITIONS USED TO STUDY LIGHT SCATTERING FROM METALLIC ROUGH SURFACES Ricardo A. Depine. Universidad de Buenos Aires The scattering of a plane wave by

  3. Stevens-Johnson Syndrome and toxic epidermal necrolysis overlap due to oral temozolomide and cranial radiotherapy.

    Science.gov (United States)

    Sarma, Nilendu

    2009-01-01

    A 46-year-old man developed Stevens-Johnson syndrome and toxic epidermal necrolysis overlap, with severe localized denudation of the skin on the head and neck, following radiotherapy and oral temozolomide therapy for cranial glioblastoma multiforme. He also had a primary malignant fibrous histiocytoma of the thigh that was amputated 5 years earlier. A rash developed after 7 days of radio- and chemotherapy. It was an extensive maculopapular rash that started over the temporal area of the head and rapidly spread, sparing only the distal limbs. Radiotherapy and temozolomide were stopped on the tenth day but the rash rapidly progressed for the next 4-6 days. Following this, the spread halted and complete recovery was observed within the next 2 weeks. The peculiarity of the presentation in this case was that the brunt of the disease with severe skin denudation was localized to the surrounding areas of cranial radiotherapy. The patient was also receiving oral phenytoin, diclofenac, and parenteral dexamethasone before chemotherapy was started. These medications were continued, even after development of the skin rash, until well after full recovery from the skin lesions. After critical evaluation of disease onset, progression, and recovery, and their relationship to the introduction and withdrawal of different medicines, it appeared that either temozolomide alone or in combination with radiotherapy most probably triggered the condition.

  4. Heat-transfer resistance measurement method (HTM)-based cell detection at trace levels using a progressive enrichment approach with highly selective cell-binding surface imprints.

    Science.gov (United States)

    Bers, Karolien; Eersels, Kasper; van Grinsven, Bart; Daemen, Mat; Bogie, Jeroen F J; Hendriks, Jerome J A; Bouwmans, Evelien E; Püttmann, Christiane; Stein, Christoph; Barth, Stefan; Bos, Gerard M J; Germeraad, Wilfred T V; De Ceuninck, Ward; Wagner, Patrick

    2014-04-01

    Surface-imprinted polymers allow for specific cell detection based on simultaneous recognition of the cell shape, cell size, and cell membrane functionalities by macromolecular cell imprints. In this study, the specificity of detection and the detection sensitivity for target cells within a pool of non-target cells were analyzed for a cell-specific surface-imprinted polymer combined with a heat-transfer-based read-out technique (HTM). A modified Chinese hamster ovarian cell line (CHO-ldlD) was used as a model system on which the transmembrane protein mucin-1 (MUC1) could be excessively expressed and for which the occurrence of MUC1 glycosylation could be controlled. In specific cancer cells, the overexpressed MUC1 protein typically shows an aberrant apical distribution and glycosylation. We show that surface-imprinted polymers discriminate between cell types that (1) only differ in the expression of a specific membrane protein (MUC1) or (2) only differ in the membrane protein being glycosylated or not. Moreover, surface-imprinted polymers of cells carrying different glycoforms of the same membrane protein do target both types of cells. These findings illustrate the high specificity of cell detection that can be reached by the structural imprinting of cells in polymer layers. Competitiveness between target and non-target cells was proven to negatively affect the detection sensitivity of target cells. Furthermore, we show that the detection sensitivity can be increased significantly by repetitively exposing the surface to the sample and eliminating non-specifically bound cells by flushing between consecutive cell exposures.

  5. Habitat use and diel vertical migration of bigeye thresher shark: Overlap with pelagic longline fishing gear.

    Science.gov (United States)

    Coelho, Rui; Fernandez-Carvalho, Joana; Santos, Miguel N

    2015-12-01

    Pelagic longliners targeting swordfish and tunas in oceanic waters regularly capture sharks as bycatch, including currently protected species as the bigeye thresher, Alopias superciliosus. Fifteen bigeye threshers were tagged with pop-up satellite archival tags (PSATs) in 2012-2014 in the tropical northeast Atlantic, with successful transmissions received from 12 tags for a total of 907 tracking days. Marked diel vertical movements were recorded on all specimens, with most of the daytime spent in deeper colder water (mean depth = 353 m, SD = 73; mean temperature = 10.7 °C, SD = 1.8) and nighttime spent in warmer water closer to the surface (mean depth = 72 m, SD = 54; mean temperature = 21.9 °C, SD = 3.7). The operating depth of the pelagic longline gear was measured with Minilog Temperature and Depth Recorders (TDRs), and the overlap with habitat utilization was calculated. Overlap is taking place mainly during the night and is higher for juveniles. The results presented herein can be used as inputs for Ecological Risk Assessments for bigeye threshers captured in oceanic tuna fisheries, and serve as a basis for efficient management and conservation of this vulnerable shark species.

  6. Effect of Island Overlap on ELM Suppression by Resonant Magnetic Perturbations in DIII-D

    Energy Technology Data Exchange (ETDEWEB)

    Fenstermacher, M E; Evans, T E; Osborne, T H; Schaffer, M J; Aldan, M P; deGrassie, J S; Gohil, P; Joseph, I; Moyer, R A; Snyder, P B; Groebner, R J; Jakubowski, M; Leonard, A W; Schmitz, O

    2007-11-08

    Recent DIII-D [J.L. Luxon, et al., Nucl. Fusion 43, 1813 (2003)] experiments show a correlation between the extent of overlap of magnetic islands induced in the edge plasma by perturbation coils and complete suppression of Type-I edge localized modes (ELMs) in plasmas with ITER-like electron pedestal collisionality {nu}*{sub e} {approx} 0.1, flux surface shape and low edge safety factor (q{sub 95} {approx} 3.6). With fixed n = 3 resonant magnetic perturbation (RMP) strength, ELM suppression is obtained only in a finite window in the edge safety factor (q{sub 95}) consistent with maximizing the resonant component of the applied helical field. ELM suppression is obtained over an increasing range of q{sub 95} by either increasing the n = 3 RMP strength, or by adding n = 1 perturbations to 'fill in' gaps between islands across the edge plasma. The suppression of Type-I ELMs correlates with a minimum width of the edge region having magnetic islands with Chirikov parameter >1.0, based on vacuum calculations of RMP mode components excluding the plasma response or rotational shielding. The fraction of vacuum magnetic field lines that are lost from the plasma, with connection length to the divertor targets comparable to an electron-ion collisional mean free path, increases throughout the island overlap region in the ELM suppressed case compared with the ELMing case.

  7. Efficient discovery of overlapping communities in massive networks.

    Science.gov (United States)

    Gopalan, Prem K; Blei, David M

    2013-09-03

    Detecting overlapping communities is essential to analyzing and exploring natural networks such as social networks, biological networks, and citation networks. However, most existing approaches do not scale to the size of networks that we regularly observe in the real world. In this paper, we develop a scalable approach to community detection that discovers overlapping communities in massive real-world networks. Our approach is based on a Bayesian model of networks that allows nodes to participate in multiple communities, and a corresponding algorithm that naturally interleaves subsampling from the network and updating an estimate of its communities. We demonstrate how we can discover the hidden community structure of several real-world networks, including 3.7 million US patents, 575,000 physics articles from the arXiv preprint server, and 875,000 connected Web pages from the Internet. Furthermore, we demonstrate on large simulated networks that our algorithm accurately discovers the true community structure. This paper opens the door to using sophisticated statistical models to analyze massive networks.

  8. Growing networks of overlapping communities with internal structure

    Science.gov (United States)

    Young, Jean-Gabriel; Hébert-Dufresne, Laurent; Allard, Antoine; Dubé, Louis J.

    2016-08-01

    We introduce an intuitive model that describes both the emergence of community structure and the evolution of the internal structure of communities in growing social networks. The model comprises two complementary mechanisms: One mechanism accounts for the evolution of the internal link structure of a single community, and the second mechanism coordinates the growth of multiple overlapping communities. The first mechanism is based on the assumption that each node establishes links with its neighbors and introduces new nodes to the community at different rates. We demonstrate that this simple mechanism gives rise to an effective maximal degree within communities. This observation is related to the anthropological theory known as Dunbar's number, i.e., the empirical observation of a maximal number of ties which an average individual can sustain within its social groups. The second mechanism is based on a recently proposed generalization of preferential attachment to community structure, appropriately called structural preferential attachment (SPA). The combination of these two mechanisms into a single model (SPA+) allows us to reproduce a number of the global statistics of real networks: The distribution of community sizes, of node memberships, and of degrees. The SPA+ model also predicts (a) three qualitative regimes for the degree distribution within overlapping communities and (b) strong correlations between the number of communities to which a node belongs and its number of connections within each community. We present empirical evidence that support our findings in real complex networks.

  9. Finding Hierarchical and Overlapping Dense Subgraphs using Nucleus Decompositions

    Energy Technology Data Exchange (ETDEWEB)

    Seshadhri, Comandur [The Ohio State Univ., Columbus, OH (United States); Pinar, Ali [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Sariyuce, Ahmet Erdem [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Catalyurek, Umit [The Ohio State Univ., Columbus, OH (United States)

    2014-11-01

    Finding dense substructures in a graph is a fundamental graph mining operation, with applications in bioinformatics, social networks, and visualization to name a few. Yet most standard formulations of this problem (like clique, quasiclique, k-densest subgraph) are NP-hard. Furthermore, the goal is rarely to nd the \\true optimum", but to identify many (if not all) dense substructures, understand their distribution in the graph, and ideally determine a hierarchical structure among them. Current dense subgraph nding algorithms usually optimize some objective, and only nd a few such subgraphs without providing any hierarchy. It is also not clear how to account for overlaps in dense substructures. We de ne the nucleus decomposition of a graph, which represents the graph as a forest of nuclei. Each nucleus is a subgraph where smaller cliques are present in many larger cliques. The forest of nuclei is a hierarchy by containment, where the edge density increases as we proceed towards leaf nuclei. Sibling nuclei can have limited intersections, which allows for discovery of overlapping dense subgraphs. With the right parameters, the nuclear decomposition generalizes the classic notions of k-cores and k-trusses. We give provable e cient algorithms for nuclear decompositions, and empirically evaluate their behavior in a variety of real graphs. The tree of nuclei consistently gives a global, hierarchical snapshot of dense substructures, and outputs dense subgraphs of higher quality than other state-of-theart solutions. Our algorithm can process graphs with tens of millions of edges in less than an hour.

  10. A model for evolution of overlapping community networks

    Science.gov (United States)

    Karan, Rituraj; Biswal, Bibhu

    2017-05-01

    A model is proposed for the evolution of network topology in social networks with overlapping community structure. Starting from an initial community structure that is defined in terms of group affiliations, the model postulates that the subsequent growth and loss of connections is similar to the Hebbian learning and unlearning in the brain and is governed by two dominant factors: the strength and frequency of interaction between the members, and the degree of overlap between different communities. The temporal evolution from an initial community structure to the current network topology can be described based on these two parameters. It is possible to quantify the growth occurred so far and predict the final stationary state to which the network is likely to evolve. Applications in epidemiology or the spread of email virus in a computer network as well as finding specific target nodes to control it are envisaged. While facing the challenge of collecting and analyzing large-scale time-resolved data on social groups and communities one faces the most basic questions: how do communities evolve in time? This work aims to address this issue by developing a mathematical model for the evolution of community networks and studying it through computer simulation.

  11. A Greedy Algorithm for Neighborhood Overlap-Based Community Detection

    Directory of Open Access Journals (Sweden)

    Natarajan Meghanathan

    2016-01-01

    Full Text Available The neighborhood overlap (NOVER of an edge u-v is defined as the ratio of the number of nodes who are neighbors for both u and v to that of the number of nodes who are neighbors of at least u or v. In this paper, we hypothesize that an edge u-v with a lower NOVER score bridges two or more sets of vertices, with very few edges (other than u-v connecting vertices from one set to another set. Accordingly, we propose a greedy algorithm of iteratively removing the edges of a network in the increasing order of their neighborhood overlap and calculating the modularity score of the resulting network component(s after the removal of each edge. The network component(s that have the largest cumulative modularity score are identified as the different communities of the network. We evaluate the performance of the proposed NOVER-based community detection algorithm on nine real-world network graphs and compare the performance against the multi-level aggregation-based Louvain algorithm, as well as the original and time-efficient versions of the edge betweenness-based Girvan-Newman (GN community detection algorithm.

  12. Syntactic priming without lexical overlap in reading comprehension.

    Science.gov (United States)

    Kim, Christina S; Carbary, Kathleen M; Tanenhaus, Michael K

    2014-06-01

    Syntactic priming without lexical overlap is well-documented in language production. In contrast, reading-time comprehension studies, which typically use locally ambiguous sentences, generally find syntactic priming only with lexical overlap. This asymmetry has led some researchers to propose that distinct mechanisms underlie the comprehension and production of syntactic structure. Instead, we propose that methodological differences in how priming is assessed are largely responsible for the asymmetry: in comprehension, lexical biases in a locally ambiguous target sentence may overwhelm the influence of syntactic priming effects on a reader's interpretation. We addressed these issues in a self-paced reading study by (1) using target sentences containing global attachment ambiguities, (2) examining a syntactic structure which does not involve an argument of the verb, and (3) factoring out the unavoidable lexical biases associated with the target sentences in a mixed-effects regression model. Under these conditions, syntactic priming affected how ambiguous sentences were parsed, and facilitated reading times when target sentences were parsed using the primed structure. This resolves discrepancies among previous findings, and suggests that the same mechanism underlies syntactic priming in comprehension and production.

  13. Overlapping nongenomic and genomic actions of thyroid hormone and steroids.

    Science.gov (United States)

    Davis, Paul J; Lin, Hung-Yun; Mousa, Shaker A; Luidens, Mary K; Hercbergs, Aleck A; Wehling, Martin; Davis, Faith B

    2011-08-01

    Nuclear receptors for thyroid hormone and steroids are members of a receptor superfamily with similar molecular organization, but discrete transcriptional functions that define genomic actions of these nonpeptide hormones. Nongenomic actions of thyroid hormone and estrogens and androgens are initiated outside the nucleus, at receptors in the plasma membrane or in cytoplasm; these actions are largely regarded to be unique to the respective hormones. However, there is an increasing number of descriptions of overlapping nongenomic and genomic effects of thyroid hormone and estrogens and testosterone. These effects are concentrated in tumor cells, where, for example, estrogens and thyroid hormone have similar mitogen-activate protein kinase (MAPK)-dependent proliferative actions on ERα-positive human breast cancer cells, and where dihydrotestosterone also can stimulate proliferation. Steroids and thyroid hormone have similar anti-apoptotic effects in certain tumors. But thyroid hormone and steroids also have overlapping or interacting nongenomic and genomic actions in heart and brain cells. These various effects of thyroid hormone and estrogens and androgens are reviewed here and their possible clinical consequences are enumerated. Copyright © 2011 Elsevier Inc. All rights reserved.

  14. Home range overlap as a driver of intelligence in primates.

    Science.gov (United States)

    Grueter, Cyril C

    2015-04-01

    Various socioecological factors have been suggested to influence cognitive capacity in primates, including challenges associated with foraging and dealing with the complexities of social life. Alexander [Alexander, 1989]. Evolution of the human psyche. In: Mellars P, Stringer C, editors. The human revolution: Behavioural and biological perspectives on the origins of modern humans. Princeton: Princeton University Press. p 455-513] proposed an integrative model for the evolution of human cognitive abilities and complex sociality that incorporates competition among coalitions of conspecifics (inter-group conflict) as a major selective pressure. However, one of the premises of this model, i.e., that when confronted with inter-group conflict selection should favor enhanced cognition, has remained empirically untested. Using a comparative approach on species data, I aimed to test the prediction that primate species (n = 104) that face greater inter-group conflict have higher cognitive abilities (indexed by endocranial volume). The degree of inter-group conflict/complexity was approximated via the variable home range overlap among groups. I found a significant relationship between home range overlap and endocranial volume, even after controlling for other predictor variables and covariates such as group size and body mass. I conclude that brain size evolution cannot be attributed exclusively to social factors such as group size, but likely reflects a variety of social and ecological determinants including inter-group conflict which poses cognitive demands on monitoring both the wider social milieu as well as spatial attributes of the habitat.

  15. Statistical mechanics of multiplex networks: entropy and overlap.

    Science.gov (United States)

    Bianconi, Ginestra

    2013-06-01

    There is growing interest in multiplex networks where individual nodes take part in several layers of networks simultaneously. This is the case, for example, in social networks where each individual node has different kinds of social ties or transportation systems where each location is connected to another location by different types of transport. Many of these multiplexes are characterized by a significant overlap of the links in different layers. In this paper we introduce a statistical mechanics framework to describe multiplex ensembles. A multiplex is a system formed by N nodes and M layers of interactions where each node belongs to the M layers at the same time. Each layer α is formed by a network G^{α}. Here we introduce the concept of correlated multiplex ensembles in which the existence of a link in one layer is correlated with the existence of a link in another layer. This implies that a typical multiplex of the ensemble can have a significant overlap of the links in the different layers. Moreover, we characterize microcanonical and canonical multiplex ensembles satisfying respectively hard and soft constraints and we discuss how to construct multiplexes in these ensembles. Finally, we provide the expression for the entropy of these ensembles that can be useful to address different inference problems involving multiplexes.

  16. A local immunization strategy for networks with overlapping community structure

    Science.gov (United States)

    Taghavian, Fatemeh; Salehi, Mostafa; Teimouri, Mehdi

    2017-02-01

    Since full coverage treatment is not feasible due to limited resources, we need to utilize an immunization strategy to effectively distribute the available vaccines. On the other hand, the structure of contact network among people has a significant impact on epidemics of infectious diseases (such as SARS and influenza) in a population. Therefore, network-based immunization strategies aim to reduce the spreading rate by removing the vaccinated nodes from contact network. Such strategies try to identify more important nodes in epidemics spreading over a network. In this paper, we address the effect of overlapping nodes among communities on epidemics spreading. The proposed strategy is an optimized random-walk based selection of these nodes. The whole process is local, i.e. it requires contact network information in the level of nodes. Thus, it is applicable to large-scale and unknown networks in which the global methods usually are unrealizable. Our simulation results on different synthetic and real networks show that the proposed method outperforms the existing local methods in most cases. In particular, for networks with strong community structures, high overlapping membership of nodes or small size communities, the proposed method shows better performance.

  17. Short-range spin glasses and Random Overlap Structures

    CERN Document Server

    Arguin, Louis-Pierre

    2010-01-01

    Properties of Random Overlap Structures (ROSt)'s constructed from the Edwards-Anderson (EA) Spin Glass model on $\\Z^d$ with periodic boundary conditions are studied. ROSt's are $\\N\\times\\N$ random matrices whose entries are the overlaps of spin configurations sampled from the Gibbs measure. Since the ROSt construction is the same for mean-field models (like the Sherrington-Kirkpatrick model) as for short-range ones (like the EA model), the setup is a good common ground to study the effect of dimensionality on the properties of the Gibbs measure. In this spirit, it is shown, using translation invariance, that the ROSt of the EA model possesses a local stability that is stronger than stochastic stability, a property known to hold at almost all temperatures in many spin glass models with Gaussian couplings. This fact is used to prove stochastic stability for the EA spin glass at all temperatures and for a wide range of coupling distributions. On the way, a theorem of Newman and Stein about the pure state decompo...

  18. Content patterns in topic-based overlapping communities.

    Science.gov (United States)

    Ríos, Sebastián A; Muñoz, Ricardo

    2014-01-01

    Understanding the underlying community structure is an important challenge in social network analysis. Most state-of-the-art algorithms only consider structural properties to detect disjoint subcommunities and do not include the fact that people can belong to more than one community and also ignore the information contained in posts that users have made. To tackle this problem, we developed a novel methodology to detect overlapping subcommunities in online social networks and a method to analyze the content patterns for each subcommunities using topic models. This paper presents our main contribution, a hybrid algorithm which combines two different overlapping sub-community detection approaches: the first one considers the graph structure of the network (topology-based subcommunities detection approach) and the second one takes the textual information of the network nodes into consideration (topic-based subcommunities detection approach). Additionally we provide a method to analyze and compare the content generated. Tests on real-world virtual communities show that our algorithm outperforms other methods.

  19. Headaches and myofascial temporomandibular disorders: overlapping entities, separate managements?

    Science.gov (United States)

    Conti, P C R; Costa, Y M; Gonçalves, D A; Svensson, P

    2016-09-01

    There are relevant clinical overlaps between some of the painful temporomandibular disorders (TMD) and headache conditions that may hamper the diagnostic process and treatment. A non-systematic search for studies on the relationship between TMD and headaches was carried out in the following databases: PubMed, Cochrane Library and Embase. Important pain mechanisms contributing to the close association and complex relationship between TMD and headache disorders are as follows: processes of peripheral and central sensitisation which take place in similar anatomical areas, the possible impairment of the descending modulatory pain pathways and the processes of referred pain. In addition, the clinical examination does not always provide distinguishing information to differentiate between headaches and TMD. So, considering the pathophysiology and the clinical presentation of some types of headache and myofascial TMD, such overlap can be considered not only a matter of comorbid relationship, but rather a question of disorders where the distinction lines are sometimes hard to identify. These concerns are certainly reflected in the current classification systems of both TMD and headache where the clinical consequences of diagnosis such as headache attributed to or associated with TMD are uncertain. There are several similarities in terms of therapeutic strategies used to manage myofascial TMD and headaches. Considering all these possible levels of interaction, we reinforce the recommendation for multidisciplinary approaches, by a team of oro-facial pain specialists and a neurologist (headache specialist), to attain the most precise differential diagnosis and initiate the best and most efficient treatment.

  20. EDITORIAL: Catalysing progress Catalysing progress

    Science.gov (United States)

    Demming, Anna

    2010-01-01

    Examples of the merits of blue-sky research in the history of science are legion. The invention of the laser, celebrating its 50th anniversary this year, is an excellent example. When it was invented it was considered to be 'a solution waiting for a problem', and yet the level to which it has now infiltrated our day-to-day technological landscape speaks volumes. At the same time it is also true to say that the direction of research is also at times rightly influenced by the needs and concerns of the general public. Over recent years, growing concerns about the environment have had a noticeable effect on research in nanotechnology, motivating work on a range of topics from green nanomaterial synthesis [1] to high-efficiency solar cells [2] and hydrogen storage [3]. The impact of the world's energy consumption on the welfare of the planet is now an enduring and well founded concern. In the face of an instinctive reluctance to curtail habits of comfort and convenience and the appendages of culture and consumerism, research into renewable and more efficient energy sources seem an encouraging approach to alleviating an impending energy crisis. Fuel cells present one alternative to traditional combustion cells that have huge benefits in terms of the efficiency of energy conversion and the limited harmful emissions. In last week's issue of Nanotechnology, Chuan-Jian Zhong and colleagues at the State University of New York at Binghamton in the USA presented an overview of research on nanostructured catalysts in fuel cells [4]. The topical review includes insights into the interactions between nanoparticles and between nanoparticles and their substrate as well as control over the composition and nanostructure of catalysts. The review also serves to highlight how the flourishing of nanotechnology research has heralded great progress in the exploitation of catalysts with nanostructures ingeniously controlled to maximize surface area and optimize energetics for synthesis

  1. Research progress and preparation methods of biomimetic functional superhydrophobic wood surfaces%木材仿生超疏水功能化制备方法

    Institute of Scientific and Technical Information of China (English)

    刘峰; 王成毓

    2016-01-01

    The superhydrophobic surfaces with the water contact angle greater than 150° and the contact angle hysteresis less than 10° have aroused a considerable interest in the scientific and industrial community due to their great importance in the fundamental research and the potential industrial applications.Generally speaking,the superhydrophobic surfaces can be fabricated by creating a rough structure on a hydrophobic material surface or modifying a rough surface with a special low surface energy material.This paper reviews the preparation methods based on superhydrophobic wood sciences,as well as the applications of the sol-gel processing,the hydrothermal synthesis processing,the wet chemical method,the surface coating technology and the solution-immersion process,and some suggestions about how the field is likely to advance in future are made.Some problems in the present stage,and the development in the future are discussed.%超疏水表面是一类与水的接触角大干150°且接触角滞后小于10°的固体表面,其在基础研究和工业应用方面具有重大的研究和实用价值.通常情况下,超疏水表面可通过在疏水材料表面构建一定尺寸的粗糙结构或利用低表面能的物质对粗糙表面进行修饰而获得.本文综述木材超疏水表面的制备方法,主要概括了溶胶-凝胶法、水热合成法、湿化学方法、表面涂覆和溶液浸泡法等的应用情况,讨论了超疏水木质基表面研发中存在的问题,探讨了该研究领域的发展趋势.

  2. An Overlapping Case of Miller Fisher Syndrome, Bickerstaff’s Encephalitis, and the ASMAN Variant of Guillain-Barre Syndrome

    Directory of Open Access Journals (Sweden)

    E. J. Pegg

    2016-01-01

    Full Text Available A 56-year-old man presented with a 3-day history of progressive tingling of the hands, unsteadiness, and diplopia. He was initially diagnosed clinically with Miller Fisher Syndrome (MFS but later developed limb weakness consistent with Guillain-Barre Syndrome (GBS and subsequently reduced consciousness consistent with Bickerstaff’s brainstem encephalitis (BBE. Neurophysiology revealed an axonal motor and sensory neuropathy, in keeping with the Acute Motor and Sensory Axonal Neuropathy (AMSAN variant of GBS. We believe that our patient had an MFS-AMSAN-BBE overlap syndrome. This is supported by his glycolipid antibody profile with high titres of anti-GQ1b IgG antibody and anti-GD1a IgG antibody. Anti-GQ1b antibodies are frequently found in both MFS and BBE and the anti-GD1a antibody is associated with axonal forms of GBS. Overlapping cases of MFS and BBE are well described, and because the same antibody is often found in both conditions, it is thought that they share a common autoimmune mechanism. BBE has also been previously reported in association with GBS lending support that it also lies on the same spectrum. This overlapping case of ASMAN variant of GBS, MFS, and BBE provides further support that these conditions are part of the same spectrum.

  3. The uses of overlap: carer-child interaction involving a nine-year-old boy with auditory neuropathy.

    Science.gov (United States)

    Anstey, Julie; Wells, Bill

    2013-01-01

    The subject of this single case study, Ricky, is a nine-year-old boy with a profound hearing loss arising from auditory neuropathy. Despite cochlear implantation at the age of two, his receptive language skills remain very restricted and his speech is unintelligible. Techniques of interactional linguistics are used to analyse recordings of Ricky and his mother during shared book reading. Both participants display competences in managing turn-taking and overlapping talk that enable them to progress the book-reading activity, to talk spontaneously on topically related matters and also to handle issues of phonetic and linguistic repair. Instances of both competitive and non-competitive overlap reveal that Ricky has access to interactionally important prosodic skills. The study thus reinforces the need, when assessing a child's potential to understand and use spoken language, to examine the child's talk from an interactional perspective. It further indicates that overlapping talk is not necessarily a problem; indeed it can be part of a solution to issues of interpersonal understanding that routinely arise in the course of talk-in-interaction.

  4. Progress in Multi-Functional Coatings Applied for Surface of Heat Exchangers%换热器多功能涂料的研究进展

    Institute of Scientific and Technical Information of China (English)

    于庆杰

    2011-01-01

    尽管进行了大量研究和尝试了各种手段,换热器表面的腐蚀和污垢沉积依然是换热器设计和运行过程中必须面对的重要问题.在换热表面涂装耐腐蚀、抗垢以及高导热率涂料改性是解决换热器腐蚀和结垢问题的重要途径.文章介绍了目前应用于换热器表面的各种多功能涂料的研究现状,分析了这些多功能涂料体系的优缺点.并结合纳米科技的发展,提出了换热器多功能涂料进一步的研究方向和发展趋势.%Despite numerous studies and measures were used, corrosion and deposition of fouling on the heat transfer surfaces are still the major problems in design and operation of industrial heat exchangers. Surface of heat exchangers with enhanced corrosion resistance, antifouling and high thermal conductivity coatings is the most important approach to solve these problems. This article described the development of raulti - functional coatings applied on the surface of heat exchangers. The main advantages and disadvantges of these systems were presented along with a brief introduction of their scientific basis. Finally, combined with the development of nano - technology, the further development of multi - functional coatings for surface of heat exchangers and its prospects were proposed.

  5. 医用316L不锈钢表面改性的研究进展%Research Progress in Surface Modification of Biomedical 316L Stainless Steel

    Institute of Scientific and Technical Information of China (English)

    孙建华; 刘金龙; 王庆良; 吴高峰

    2011-01-01

    316L不锈钢作为生物医用材料在近20年内被广泛应用在矫形外科植入物、牙种植体和冠状动脉支架等领域.分析了目前医用316L不锈钢在临床应用中存在的主要问题.指出生物相客性、耐腐蚀性和耐磨损性有待提高和表面改性是改善上述问题的有效途径.综述了医用316L不锈钢表面改性的各种途径及研究成果,并展望了316L不锈钢表面改性的研究趋势.%316L stainless steel is an extensively used biomedical material for orthopedic implants, dental implant and cardiovascular stents in the last two decades. Based on the primary problem of biomedical 316L stainless steel in biocompatibility, corrosion resistance and wear resistance properties, it is pointed out that surface modifacation is an effective way to improve these properties. The various approaches and research achievement of surface modification for biomeical 316L stainless steel are reviewed, and the research trend of surface modification is also presented.

  6. 材料表面接枝聚乙二醇(PEG)刷的研究进展%Progress on Development of Surface Grafted Polyethylene Glycol (PEG) Brush

    Institute of Scientific and Technical Information of China (English)

    刘明光; 张梦; 晏欣

    2012-01-01

    Polyethylene glycol (PEG) brush can form a highly hydrophilie layer on the material surfaces to prevent the non-selective adsorption of proteins and reduce the adhesion of bacterium and microbes for its repulsive penetration. The anti-fouling applications of poly (ethylene glycol) brush on polymers, siliceous materials and metal surfaces are reviewed and the possible application on metal surface for anticorrosion is covered.%聚乙二醇(PEG)刷能形成压制细菌靠近、产生排斥渗透力、降低聚合物链段运动性的高亲水性层,可阻止蛋白质的非选择性吸附以及减少细菌和微生物的粘接,可提高基质表面的防污能力,对金属而言亦可增加其缓蚀性能.本文综述了聚乙二醇刷在聚合物、硅基材料和金属等材料表面的应用,并提出了聚乙二醇(PEG)刷在未来应用于非生物金属材料防污及防腐等方面的可能性.

  7. Research Progress on Waterborne Polyurethane Synthetic Leather Surface Treatment Agent%水性聚氨酯合成革表面处理剂研究进展

    Institute of Scientific and Technical Information of China (English)

    陈新; 杨明华; 沈秋仙

    2015-01-01

    水性聚氨酯具有环保、无毒等特性,将水性聚氨酯应用于合成革涂饰剂可以消除溶剂型合成革处理剂的环境污染问题。本文从合成革表面处理剂的应用现状、合成革用高物性水性聚氨酯研发现状、合成革用水性聚氨酯助剂以及水性聚氨酯合成革表面处理剂品种等几方面进行分析和探讨,指出水性聚氨酯合成革表面处理剂的研发方向。%With environmental and non-toxic characteristics , waterborne polyurethane applied to synthetic leather finishing agent can eliminate the environmental pollution problem of the solvent synthetic leather treatment agent .The present situation of the application of synthetic leather surface treatment agent , the present situation of research and development of waterborne polyurethane with high physical properties for synthetic leather , waterborne polyurethane additives for synthetic leather and waterborne polyurethane leather surface treating agent varieties were analyzed and discussed , and the direction of research and development of waterborne polyurethane synthetic leather surface treatment agent was pointed out.

  8. Structure of the Tropomyosin Overlap Complex from Chicken Smooth Muscle: Insight into the Diversity of N-Terminal Recognition

    Energy Technology Data Exchange (ETDEWEB)

    Frye, Jeremiah; Klenchin, Vadim A.; Rayment, Ivan (UW)

    2010-09-08

    Tropomyosin is a stereotypical {alpha}-helical coiled coil that polymerizes to form a filamentous macromolecular assembly that lies on the surface of F-actin. The interaction between the C-terminal and N-terminal segments on adjacent molecules is known as the overlap region. We report here two X-ray structures of the chicken smooth muscle tropomyosin overlap complex. A novel approach was used to stabilize the C-terminal and N-terminal fragments. Globular domains from both the human DNA ligase binding protein XRCC4 and bacteriophage {phi}29 scaffolding protein Gp7 were fused to 37 and 28 C-terminal amino acid residues of tropomyosin, respectively, whereas the 29 N-terminal amino acids of tropomyosin were fused to the C-terminal helix bundle of microtubule binding protein EB1. The structures of both the XRCC4 and Gp7 fusion proteins complexed with the N-terminal EB1 fusion contain a very similar helix bundle in the overlap region that encompasses {approx}15 residues. The C-terminal coiled coil opens to allow formation of the helix bundle, which is stabilized by hydrophobic interactions. These structures are similar to that observed in the NMR structure of the rat skeletal overlap complex [Greenfield, N. J., et al. (2006) J. Mol. Biol. 364, 80-96]. The interactions between the N- and C-terminal coiled coils of smooth muscle tropomyosin show significant curvature, which differs somewhat between the two structures and implies flexibility in the overlap complex, at least in solution. This is likely an important attribute that allows tropomyosin to assemble around the actin filaments. These structures provide a molecular explanation for the role of N-acetylation in the assembly of native tropomyosin.

  9. Overlap statistics of cumuliform boundary-layer cloud fields in large-eddy simulations

    NARCIS (Netherlands)

    Neggers, R.A.J.; Heus, T.; Siebesma, A.P.

    2011-01-01

    Overlap statistics of cumuliform boundary-layer clouds are studied using large-eddy simulations at high resolutions. The cloud overlap is found to be highly inefficient, due to the typical irregularity of cumuliform clouds over a wide range of scales. The detection of such inefficient overlap is ena

  10. Clinical features of the overlap syndrome of autoimmune hepatitis and primary biliary cirrhosis: retrospective study

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    @@ PBC-AIH overlap syndrome is an autoimmune liver disease between AIH (autoimmune hepatitis) and PBC (primary biliary cirrhosis). To investigate the characteristic of the PBC-AIH overlap syndrome, we have conducted a retros- pective study of 12 diagnosed overlap syndrome patients and compared them with typical PBC and AIH on the basis of clinical, biochemical, serological and histopathological findings.

  11. Genome classification by gene distribution: An overlapping subspace clustering approach

    Directory of Open Access Journals (Sweden)

    Halgamuge Saman K

    2008-04-01

    Full Text Available Abstract Background Genomes of lower organisms have been observed with a large amount of horizontal gene transfers, which cause difficulties in their evolutionary study. Bacteriophage genomes are a typical example. One recent approach that addresses this problem is the unsupervised clustering of genomes based on gene order and genome position, which helps to reveal species relationships that may not be apparent from traditional phylogenetic methods. Results We propose the use of an overlapping subspace clustering algorithm for such genome classification problems. The advantage of subspace clustering over traditional clustering is that it can associate clusters with gene arrangement patterns, preserving genomic information in the clusters produced. Additionally, overlapping capability is desirable for the discovery of multiple conserved patterns within a single genome, such as those acquired from different species via horizontal gene transfers. The proposed method involves a novel strategy to vectorize genomes based on their gene distribution. A number of existing subspace clustering and biclustering algorithms were evaluated to identify the best framework upon which to develop our algorithm; we extended a generic subspace clustering algorithm called HARP to incorporate overlapping capability. The proposed algorithm was assessed and applied on bacteriophage genomes. The phage grouping results are consistent overall with the Phage Proteomic Tree and showed common genomic characteristics among the TP901-like, Sfi21-like and sk1-like phage groups. Among 441 phage genomes, we identified four significantly conserved distribution patterns structured by the terminase, portal, integrase, holin and lysin genes. We also observed a subgroup of Sfi21-like phages comprising a distinctive divergent genome organization and identified nine new phage members to the Sfi21-like genus: Staphylococcus 71, phiPVL108, Listeria A118, 2389, Lactobacillus phi AT3, A2

  12. MERRF/MELAS overlap syndrome due to the m.3291T>C mutation.

    Science.gov (United States)

    Liu, Kaiming; Zhao, Hui; Ji, Kunqian; Yan, Chuanzhu

    2014-03-01

    We report the case of a 19-year-old Chinese female harboring the m.3291T>C mutation in the MT-TL1 gene encoding the mitochondrial transfer RNA for leucine. She presented with a complex phenotype characterized by progressive cerebellar ataxia, frequent myoclonus seizures, recurrent stroke-like episodes, migraine-like headaches with nausea and vomiting, and elevated resting lactate blood level. It is known that the myoclonus epilepsy with ragged-red fibers (MERRF) is characterized by cerebellar ataxia and myoclonus epilepsy, while that the mitochondrial encephalopathy, lactic acidosis, and stroke-like episodes (MELAS) is characterized by recurrent stroke-like episodes, migraine-like headaches, and elevated resting lactate blood level. So the patient's clinical manifestations suggest the presence of a MERRF/MELAS overlap syndrome. Muscle biopsy of the patient showed the presence of numerous scattered ragged-red fibers, some cytochrome c oxidase-deficient fibers, and several strongly succinate dehygrogenase-reactive vessels, suggestive of a mitochondrial disorder. Direct sequencing of the complete mitochondrial genome of the proband revealed no mutations other than the T-to-C transition at nucleotide position 3291. Restriction fragment length polymorphism analysis of the proband and her family revealed maternal inheritance of the mutation in a heteroplasmic manner. The analysis of aerobic respiration and glycolysis demonstrated that the fibroblasts from the patient had mitochondrial dysfunction. Our results suggest that the m.3291T>C is pathogenic. This study is the first to describe the m.3291T>C mutation in association with the MERRF/MELAS overlap syndrome.

  13. The asthma–COPD overlap syndrome: how is it defined and what are its clinical implications?

    Directory of Open Access Journals (Sweden)

    van den Berge M

    2016-02-01

    Full Text Available Maarten van den Berge,1,2 René Aalbers,31Department of Pulmonary Diseases, University Medical Center Groningen, University of Groningen, 2GRIAC Research Institute, University Medical Center Groningen, University of Groningen, 3Department of Pulmonary Diseases, Martini Hospital, Groningen, the Netherlands Abstract: It is increasingly recognized that both asthma and chronic obstructive pulmonary disease (COPD are heterogeneous diseases with a large inter-individual variability with respect to their clinical expression, disease progression, and responsiveness to the available treatments. The introduction of asthma–COPD overlap syndrome (ACOS may lead to a better clinical characterization and improved treatment of patients with obstructive airways disease. However, it is still in its early phase and several improvements will have to be made. First, a clear definition of ACOS and preferably also its sub-phenotypes, eg, asthma–ACOS and COPD–ACOS, is urgently needed. That would also allow researchers to design clinical studies in well-defined patients. The latter is important since the interpretation of clinical studies performed so far is hampered by the use of many different definitions of ACOS. Second, future studies are needed to investigate the role of state-of-the-art techniques such as computed tomography, genetics, and genomics in the phenotyping of patients with obstructive airways disease, ie, asthma, COPD, and ACOS. Third, longitudinal studies are now needed to better define the clinical implications of ACOS with respect to the long-term outcome and treatment of ACOS and its sub-phenotypes compared to only asthma or COPD. Keywords: ACOS, asthma, COPD, inflammation, remodeling, overlap phenotype

  14. Geographic structure of adelie penguin populations: overlap in colony-specific foraging areas

    Science.gov (United States)

    Ainley, D.G.; Ribic, C.A.; Ballard, G.; Heath, S.; Gaffney, I.; Karl, B.J.; Barton, K.J.; Wilson, P.R.; Webb, S.

    2004-01-01

    In an investigation of the factors leading to geographic structuring among Ade??lie Penguin (Pygoscelis adeliae) populations, we studied the size and overlap of colony-specific foraging areas within an isolated cluster of colonies. The study area, in the southwestern Ross Sea, included one large and three smaller colonies, ranging in size from 3900 to 135000 nesting pairs, clustered on Ross and Beaufort Islands. We used triangulation of radio signals from transmitters attached to breeding penguins to determine foraging locations and to define colony-specific foraging areas during the chick-provisioning period of four breeding seasons, 1997-2000. Colony populations (nesting pairs) were determined using aerial photography just after egg-laying; reproductive success was estimated by comparing ground counts of chicks fledged to the number of breeding pairs apparent in aerial photos. Foraging-trip duration, meal size, and adult body mass were estimated using RFID (radio frequency identification) tags and an automated reader and weighbridge. Chick growth was assessed by weekly weighing. We related the following variables to colony size: foraging distance, area, and duration; reproductive success; chick meal size and growth rate; and seasonal variation in adult body mass. We found that penguins foraged closest to their respective colonies, particularly at the smaller colonies. However, as the season progressed, foraging distance, duration, and area increased noticeably, especially at the largest colony. The foraging areas of the smaller colonies overlapped broadly, but very little foraging area overlap existed between the large colony and the smaller colonies, even though the foraging area of the large colony was well within range of the smaller colonies. Instead, the foraging areas of the smaller colonies shifted as that of the large colony grew. Colony size was not related to chick meal size, chick growth, or parental body mass. This differed from the year previous to

  15. Progression towards optimization of viscosity of highly concentrated carbonaceous solid-water slurries by incorporating and modifying surface chemistry parameters with and without additives

    Science.gov (United States)

    Mukherjee, Amrita

    Carbonaceous solid-water slurries (CSWS) are concentrated suspensions of coal, petcoke bitumen, pitch etc. in water which are used as feedstock for gasifiers. The high solid loading (60-75 wt.%) in the slurry increases CSWS viscosity. For easier handling and pumping of these highly loaded mixtures, low viscosities are desirable. Depending on the nature of the carbonaceous solid, solids loading in the slurry and the particle size distribution, viscosity of a slurry can vary significantly. Ability to accurately predict the viscosity of a slurry will provide a better control over the design of slurry transport system and for viscosity optimization. The existing viscosity prediction models were originally developed for hard-sphere suspensions and therefore do not take into account surface chemistry. As a result, the viscosity predictions using these models for CSWS are not very accurate. Additives are commonly added to decrease viscosity of the CSWS by altering the surface chemistry. Since additives are specific to CSWS, selection of appropriate additives is crucial. The goal of this research was to aid in optimization of CSWS viscosity through improved prediction and selection of appropriate additive. To incorporate effect of surface chemistry in the models predicting suspension viscosity, the effect of the different interfacial interactions caused by different surface chemistries has to be accounted for. Slurries of five carbonaceous solids with varying O/C ratio (to represent different surface chemistry parameters) were used for the study. To determine the interparticle interactions of the carbonaceous solids in water, interfacial energies were calculated on the basis of surface chemistries, characterized by contact angles and zeta potential measurements. The carbonaceous solid particles in the slurries were assumed to be spherical. Polar interaction energy (hydrophobic/hydrophilic interaction energy), which was observed to be 5-6 orders of magnitude higher than the

  16. Enhancement of Coherent THz Smith-Purcell Radiation by Resonance Overlapping

    Science.gov (United States)

    Li, Weiwei; Xu, Yuanfang; Lu, Yalin; He, Zhigang; Jia, Qika; Wang, Lin

    2017-01-01

    Frequency-locked coherent Smith-Purcell Radiation (SPR) is emitted when a train of pre-bunched electron beam passes close to the surface of a metallic grating, which develops an energy density spectrum restricted to harmonics of the bunching frequency. For the lamellar grating with narrow grooves, the radiation spectrum from a single electron can also have a feature of narrow band, which is related to the grating structure and the beam energy. The combination of them is proposed in this paper. By properly choosing the parameters, the peak frequency of single electron radiation can be overlapped with the harmonics of the bunching frequency of the electron bunch train, leading to the generation of extremely intense narrow-band THz radiation.

  17. Enhancement of Coherent THz Smith-Purcell Radiation by Resonance Overlapping

    Science.gov (United States)

    Li, Weiwei; Xu, Yuanfang; Lu, Yalin; He, Zhigang; Jia, Qika; Wang, Lin

    2016-08-01

    Frequency-locked coherent Smith-Purcell Radiation (SPR) is emitted when a train of pre-bunched electron beam passes close to the surface of a metallic grating, which develops an energy density spectrum restricted to harmonics of the bunching frequency. For the lamellar grating with narrow grooves, the radiation spectrum from a single electron can also have a feature of narrow band, which is related to the grating structure and the beam energy. The combination of them is proposed in this paper. By properly choosing the parameters, the peak frequency of single electron radiation can be overlapped with the harmonics of the bunching frequency of the electron bunch train, leading to the generation of extremely intense narrow-band THz radiation.

  18. Dependence of fluorescence intensity on the spectral overlap between fluorophores and plasmon resonant single silver nanoparticles.

    Science.gov (United States)

    Chen, Yeechi; Munechika, Keiko; Ginger, David S

    2007-03-01

    We investigate the fluorescence from dyes coupled to individual DNA-functionalized metal nanoparticles. We use single-particle darkfield scattering and fluorescence microscopy to correlate the fluorescence intensity of the dyes with the localized surface plasmon resonance (LSPR) spectra of the individual metal nanoparticles to which they are attached. For each of three different dyes, we observe a strong correlation between the fluorescence intensity of the dye and the degree of spectral overlap with the plasmon resonance of the nanoparticle. On average, we observe the brightest fluorescence from dyes attached to metal nanoparticles that have a LSPR scattering peak approximately 40-120 meV higher in energy than the emission peak of the fluorophore. These results should prove useful for understanding and optimizing metal-enhanced fluorescence.

  19. 生物陶瓷表面蛋白吸附的研究进展%Research progress of protein adsorption on surface of bioceramics

    Institute of Scientific and Technical Information of China (English)

    王传勇

    2012-01-01

    Bioactive ceramics have been widely used in replacing defected hard tissues caused by trauma or disease. When biomaterials are placed in bio-enviroments, various protein molecules will immediately accumulate on material surfaces forming a bioactive layer. Moreover, this protein layer plays an important role in determining the biocompatibility of materials. So this paper briefly reviews the protein adsorption on bioceramics surfaces, including the type of proteins absorbed, methods being used, factors effecting adsorption capacity and methods improving it, providing reference for the surface biological modification of bioactive ceramic materials.%近年来,生物陶瓷材料在替代因外伤或疾病而导致缺损的硬组织方面已获得广泛的应用,当材料被植入生物体内后,其表面立即会发生多种蛋白质分子的堆积,这一蛋白质层对于改变材料的表面性质起着重要的作用.因此,对生物材料表面蛋白吸附的考察已经成为评价材料生物相容性和生物活性的重要内容.本文就生物陶瓷表面蛋白吸附的主要种类、研究方法、影响因素及其改进研究等相关内容作一综述,以期为生物陶瓷表面生物学改性的研究提供基础理论参考.

  20. Maximizing power to track Alzheimer’s disease and MCI progression by LDA-based weighting of longitudinal ventricular surface features

    Science.gov (United States)

    Gutman, Boris A.; Hua, Xue; Rajagopalan, Priya; Chou, Yi-Yu; Wang, Yalin; Yanovsky, Igor; Toga, Arthur W.; Jack, Clifford R.; Weiner, Michael W.; Thompson, Paul M.

    2013-01-01

    We propose a new method to maximize biomarker efficiency for detecting anatomical change over time in serial MRI. Drug trials using neuroimaging become prohibitively costly if vast numbers of subjects must be assessed, so it is vital to develop efficient measures of brain change. A popular measure of efficiency is the minimal sample size (n80) needed to detect 25% change in a biomarker, with 95% confidence and 80% power. For multivariate measures of brain change, we can directly optimize n80 based on a Linear Discriminant Analysis (LDA). Here we use a supervised learning framework to optimize n80, offering two alternative solutions. With a new medial surface modeling method, we track 3D dynamic changes in the lateral ventricles in 2065 ADNI scans. We apply our LDA-based weighting to the results. Our best average n80—in two-fold nested cross-validation—is 104 MCI subjects (95% CI: [94,139]) for a 1-year drug trial, and 75 AD subjects [64,102]. This compares favorably with other MRI analysis methods. The standard “statistical ROI” approach applied to the same ventricular surfaces requires 165 MCI or 94 AD subjects. At 2 years, the best LDA measure needs only 67 MCI and 52 AD subjects, versus 119 MCI and 80 AD subjects for the stat-ROI method. Our surface-based measures are unbiased: they give no artifactual additive atrophy over three time points. Our results suggest that statistical weighting may boost efficiency of drug trials that use brain maps. PMID:23296188

  1. Research Progress on Anti-icing Performance of Superhydrophobic Surfaces%超疏水表面抗结冰性能研究进展

    Institute of Scientific and Technical Information of China (English)

    冯杰; 卢津强; 秦兆倩

    2012-01-01

    阐述了近期国内外对超疏水表面抗结冰的研究进展,以期弄清这种特殊浸润性表面的抗结冰性能。发现必须根据超疏水表面的微结构类型判断其能否抗结冰,而不能只依据接触角进行笼统的判断。有些超疏水表面,其抗结冰能力随着结冰一融冰循环次数的增加而下降。在低温高湿条件下,很多超疏水表面的抗结冰能力会因水蒸气在表面微纳结构的间隙内冷凝而恶化。因此,设计机械强度高的超疏水表面(耐结冰一融冰循环)、或能使冷凝水滴在其上自迁移的新型超疏水表面、或者简单地在固体表面沉积一层光滑牢固的疏冰涂层,或许是制备持久抗结冰表面的现实、可靠选择。%The studies of ice accretion on superhydrophobic surfaces (SHS) in recent years were reviewed in this paper. The conclusion is that the detailed surface structure is very important in deciding whether SHS are really icephobic and judgment by contact angle alone is not sufficient. The ice-repellent properties of some SHS can deteriorate after icing/deicing cycles. The anti-icing efficiency of SHS can significantly lower in a humid atmosphere because water vapour condenses in the interspace between surface protrudes. Thus designing SHS with strong microstructure, or on which condensed water droplets could spontaneously move away, or simply depositing smooth coat with low ice adhesion strength, may be realistic and reliable selects in preparing anti-icing surfaces with long durability.

  2. Overlapping DSPP mutations cause dentin dysplasia and dentinogenesis imperfecta.

    Science.gov (United States)

    McKnight, D A; Simmer, J P; Hart, P S; Hart, T C; Fisher, L W

    2008-12-01

    Dentinogenesis imperfecta (DGI) and dentin dysplasia (DD) are allelic disorders due to mutations in DSPP. Typically, the phenotype breeds true within a family. Recently, two reports showed that 3 different net -1 bp frameshift mutations early in DSPP's repeat domain caused DD, whereas 6 more 3' frameshift mutations were associated with DGI. Here we identify a DD kindred with a novel -1 bp frameshift (c.3141delC) that falls within the portion of the DSPP repeat domain previously associated solely with the DGI phenotype. This new frameshift mutation shows that overlapping DSPP mutations can give rise to either DGI or DD phenotypes. Furthermore, the consistent kindred presentation of the DD or DGI phenotype appears to be dependent on an as-yet-undescribed genetic modifier closely linked to DSPP.

  3. Overlap Algorithms in Flexible Job-shop Scheduling

    Directory of Open Access Journals (Sweden)

    Celia Gutierrez

    2014-06-01

    Full Text Available The flexible Job-shop Scheduling Problem (fJSP considers the execution of jobs by a set of candidate resources while satisfying time and technological constraints. This work, that follows the hierarchical architecture, is based on an algorithm where each objective (resource allocation, start-time assignment is solved by a genetic algorithm (GA that optimizes a particular fitness function, and enhances the results by the execution of a set of heuristics that evaluate and repair each scheduling constraint on each operation. The aim of this work is to analyze the impact of some algorithmic features of the overlap constraint heuristics, in order to achieve the objectives at a highest degree. To demonstrate the efficiency of this approach, experimentation has been performed and compared with similar cases, tuning the GA parameters correctly.

  4. Vibration of composite beams with two overlapping delaminations

    Institute of Scientific and Technical Information of China (English)

    Christian N. Della; Dongwei Shu; Yapu Zhao

    2005-01-01

    Delaminations in composite laminates may develop from small cracks due to fabrication and impact loading, or from places of high stress concentration. The locations of the delaminations are not determinate. In this research, an analytical solution for the free vibration of a composite beam with two overlapping delaminations is presented. The delaminated beam is analyzed as seven interconnected beams using the delaminations as their boundaries. The continuity and equilibrium conditions are satisfied between the adjoining regions of the beams. Classical beam theory is applied to each of the beams. Complex vibration behaviors emerge for different sizes and locations of the delaminations. Comparison with analytical results reported in the literature verifies the validity of the present solution.

  5. Non-overlapping domain decomposition methods in structural mechanics

    CERN Document Server

    Gosselet, Pierre; 10.1007/BF02905857

    2012-01-01

    The modern design of industrial structures leads to very complex simulations characterized by nonlinearities, high heterogeneities, tortuous geometries... Whatever the modelization may be, such an analysis leads to the solution to a family of large ill-conditioned linear systems. In this paper we study strategies to efficiently solve to linear system based on non-overlapping domain decomposition methods. We present a review of most employed approaches and their strong connections. We outline their mechanical interpretations as well as the practical issues when willing to implement and use them. Numerical properties are illustrated by various assessments from academic to industrial problems. An hybrid approach, mainly designed for multifield problems, is also introduced as it provides a general framework of such approaches.

  6. Multigrid Preconditioning for the Overlap Operator in Lattice QCD

    CERN Document Server

    Brannick, James; Kahl, Karsten; Leder, Björn; Rottmann, Matthias; Strebel, Artur

    2014-01-01

    The overlap operator is a lattice discretization of the Dirac operator of quantum chromodynamics, the fundamental physical theory of the strong interaction between the quarks. As opposed to other discretizations it preserves the important physical property of chiral symmetry, at the expense of requiring much more effort when solving systems with this operator. We present a preconditioning technique based on another lattice discretization, the Wilson-Dirac operator. The mathematical analysis precisely describes the effect of this preconditioning in the case that the Wilson-Dirac operator is normal. Although this is not exactly the case in realistic settings, we show that current smearing techniques indeed drive the Wilson-Dirac operator towards normality, thus providing a motivation why our preconditioner works well in computational practice. Results of numerical experiments in physically relevant settings show that our preconditioning yields accelerations of up to one order of magnitude.

  7. Resolution of overlapping ambiguity strings based on maximum entropy model

    Institute of Scientific and Technical Information of China (English)

    ZHANG Feng; FAN Xiao-zhong

    2006-01-01

    The resolution of overlapping ambiguity strings (OAS) is studied based on the maximum entropy model.There are two model outputs,where either the first two characters form a word or the last two characters form a word.The features of the model include one word in context of OAS,the current OAS and word probability relation of two kinds of segmentation results.OAS in training text is found by the combination of the FMM and BMM segmentation method.After feature tagging they are used to train the maximum entropy model.The People Daily corpus of January 1998 is used in training and testing.Experimental results show a closed test precision of 98.64% and an open test precision of 95.01%.The open test precision is 3,76% better compared with that of the precision of common word probability method.

  8. Some considerations on disciplinary liability overlapping criminal liability

    Directory of Open Access Journals (Sweden)

    Ştefania DUMITRACHE

    2011-12-01

    Full Text Available Among the various forms of legal liability there are many points of contact reflected in their common goal - the encouragement of active members of society. Starting from the statement - the independent nature of the various forms of legal liability does not mean they are excluded - in what follows, given the legal autonomy of spheres of social relations protected by various laws, we will consider disciplinary overlapping with other forms of legal liability - criminal liability. Of course, this is possible only if the act committed by the employee is both disciplinary and criminal. This form of accumulation are possible without violating the principle of non bis in idem that since each of the envisaged legal rules protect different social relations. In addition of this applying the same principle prohibits two or more same kind sanctions for an unlawful action

  9. Overlapping Communication and Computation with OpenMP and MPI

    Directory of Open Access Journals (Sweden)

    Timothy H. Kaiser

    2001-01-01

    Full Text Available Machines comprised of a distributed collection of shared memory or SMP nodes are becoming common for parallel computing. OpenMP can be combined with MPI on many such machines. Motivations for combing OpenMP and MPI are discussed. While OpenMP is typically used for exploiting loop-level parallelism it can also be used to enable coarse grain parallelism, potentially leading to less overhead. We show how coarse grain OpenMP parallelism can also be used to facilitate overlapping MPI communication and computation for stencil-based grid programs such as a program performing Gauss-Seidel iteration with red-black ordering. Spatial subdivision or domain decomposition is used to assign a portion of the grid to each thread. One thread is assigned a null calculation region so it was free to perform communication. Example calculations were run on an IBM SP using both the Kuck & Associates and IBM compilers.

  10. Resolving and quantifying overlapped chromatographic bands by transmutation

    Science.gov (United States)

    Malinowski

    2000-09-15

    A new chemometric technique called "transmutation" is developed for the purpose of sharpening overlapped chromatographic bands in order to quantify the components. The "transmutation function" is created from the chromatogram of the pure component of interest, obtained from the same instrument, operating under the same experimental conditions used to record the unresolved chromatogram of the sample mixture. The method is used to quantify mixtures containing toluene, ethylbenzene, m-xylene, naphthalene, and biphenyl from unresolved chromatograms previously reported. The results are compared to those obtained using window factor analysis, rank annihilation factor analysis, and matrix regression analysis. Unlike the latter methods, the transmutation method is not restricted to two-dimensional arrays of data, such as those obtained from HPLC/DAD, but is also applicable to chromatograms obtained from single detector experiments. Limitations of the method are discussed.

  11. A study of pentaquarks on the lattice with overlap fermions

    Energy Technology Data Exchange (ETDEWEB)

    N. Mathur; F.X. Lee; A. Alexandru; C. Bennhold; Y. Chen; S.J. Dong; T. Draper; I. Horvath; K.F. Liu; S. Tamhankar; J.B. Zhang

    2004-10-01

    We present a quenched lattice QCD calculation of spin-1/2 five-quark states with uudd{bar s} quark content for both positive and negative parities. We do not observe any bound pentaquark state in these channels for either I = 0 or I = 1. The states we found are consistent with KN scattering states which are checked to exhibit the expected volume dependence of the spectral weight. The results are based on overlap-fermion propagators on two lattices, 12{sup 3} x 28 and 16{sup 3} x 28, with the same lattice spacing of 0.2 fm, and pion mass as low as {approx} 180 MeV.

  12. Townes-Brocks syndrome with overlapping features of hemifacial microsomia

    Directory of Open Access Journals (Sweden)

    Yadavalli Guruprasad

    2013-01-01

    Full Text Available Townes-Brocks syndrome (TBS is an autosomal dominant disorder with multiple malformations and variable expression. Major findings include external ear anomalies, hearing loss, limb deformity, imperforate anus, and renal malformations. Intelligence is usually normal, although mild moderate mental retardation has been reported. It can be difficult to differentiate clinically between hemifacial microsomia (HFM and Townes-Brocks syndrome (TBS. The distinction is important because TBS is inherited as an autosomal dominant trait, whereas HFM is sporadic. We report a classical case of TBS with overlapping features of hemifacial microsomia in an 11 year old boy who presented with unilateral anotia with hearing defect, renal agenesis and imperforate anus by birth.

  13. Eosinophilic Enteritis with Ascites in a Patient with Overlap Syndrome

    Directory of Open Access Journals (Sweden)

    Spyros Aslanidis

    2009-01-01

    Full Text Available Gastrointestinal involvement is frequent in patients with systemic lupus erythematosus (SLE. Eosinophilic gastroenteritis, however, has only rarely been described in rheumatological conditions, despite its reported connection to autoimmune diseases, such as hypereosinophilic syndrome, vasculitides, and systemic mastoidosis. It presents typically with abdominal pain and diarrhea and is only exceptionally associated with ascites. Diagnosis can be problematic, as several other clinical conditions (malignancies, infection/tuberculosis, and inflammatory bowel diseases have to be ruled out. It is basically a nonsurgical disease, with excellent recovery on conservative treatment. We report the rare case of a young woman with overlap syndrome who presented with abdominal pain and ascites. The diagnosis of eosinophilic enteritis was made based on clinical, radiological, and laboratory criteria. The patient was treated with corticosteroids with excellent response.

  14. The overlap between anxiety, depression, and obsessive-compulsive disorder.

    Science.gov (United States)

    Goodwin, Guy M

    2015-09-01

    The anxiety disorders include generalized anxiety disorder, specific phobia, social phobia, agoraphobia, and panic disorder. In addition to the specific symptoms of these disorders, there may be a common experience of anxiety and even dysphoria across the conditions, and of course recourse to the same drug or choice of drugs for treatment. This overlap probably occurs because of universal dimensions of distress or negative affectivity, a shared genetic predisposition, and a common neurobiology Evidence of shared genes is still based mainly on twin studies, but the shared neurobiology can be investigated directly by the investigation of emotional or cognitive bias either behaviorally or using functional brain imaging. This intermediate phenotype can then provide a substrate for understanding and developing medicines and psychological treatments.

  15. Contrasting Diversity Values: Statistical Inferences Based on Overlapping Confidence Intervals

    Science.gov (United States)

    MacGregor-Fors, Ian; Payton, Mark E.

    2013-01-01

    Ecologists often contrast diversity (species richness and abundances) using tests for comparing means or indices. However, many popular software applications do not support performing standard inferential statistics for estimates of species richness and/or density. In this study we simulated the behavior of asymmetric log-normal confidence intervals and determined an interval level that mimics statistical tests with P(α) = 0.05 when confidence intervals from two distributions do not overlap. Our results show that 84% confidence intervals robustly mimic 0.05 statistical tests for asymmetric confidence intervals, as has been demonstrated for symmetric ones in the past. Finally, we provide detailed user-guides for calculating 84% confidence intervals in two of the most robust and highly-used freeware related to diversity measurements for wildlife (i.e., EstimateS, Distance). PMID:23437239

  16. Venturing into the overlap between pediatric orthopaedics and hand surgery.

    Science.gov (United States)

    Kozin, Scott H; Zlotolow, Dan A; Ratner, Joshua A

    2014-01-01

    There is an overlap between pediatric orthopaedic surgery and hand surgery. A pediatric orthopaedic surgeon is accustomed to the intricacies of the immature skeleton, whereas a hand surgeon is more familiar with the regional anatomy and finer surgical techniques. Many hand diagnoses and surgical techniques are appropriate for the pediatric orthopaedic surgeon, including straightforward duplicated thumb reconstruction of a trigger thumb. Many pediatric diagnoses are more suitable for treatment by a hand surgeon, including simple syndactyly release and complex duplicated thumb reconstruction. Other procedures, such as pollicization, cleft hand reconstruction, synpolydactyly release, and macrodactyly management, require more advanced expertise for successful treatment. It is helpful for pediatric orthopaedic surgeons and hand surgeons to be familiar with the indications, surgical techniques, outcomes, and complications of pediatric hand surgery.

  17. Long memory analysis by using maximal overlapping discrete wavelet transform

    Science.gov (United States)

    Shafie, Nur Amalina binti; Ismail, Mohd Tahir; Isa, Zaidi

    2015-05-01

    Long memory process is the asymptotic decay of the autocorrelation or spectral density around zero. The main objective of this paper is to do a long memory analysis by using the Maximal Overlapping Discrete Wavelet Transform (MODWT) based on wavelet variance. In doing so, stock market of Malaysia, China, Singapore, Japan and United States of America are used. The risk of long term and short term investment are also being looked into. MODWT can be analyzed with time domain and frequency domain simultaneously and decomposing wavelet variance to different scales without loss any information. All countries under studied show that they have long memory. Subprime mortgage crisis in 2007 is occurred in the United States of America are possible affect to the major trading countries. Short term investment is more risky than long term investment.

  18. Segmentation of Telugu Touching Conjunct Consonants Using Overlapping Bounding Boxes

    Directory of Open Access Journals (Sweden)

    J. Bharathi

    2013-06-01

    Full Text Available Telugu is an ancient historic language. It is spoken by about 84.6 million people of Andhra Pradesh. The script has circular orthography with few horizontal and slant strokes. Huge literature exists for this language in printed form which needs to be preserved by scanning and converting it into editable form. Segmentation of touching characters is a major issue in any OCR system. Segmenting the wordsinto individual glyphs by Connected Component Analysis yields poor results due to touching characters. Touching conjunct consonants is the major component which needs to be properly addressed for improving the accuracy of an OCR system. In this paper an overlapping bounding box approach is presented for segmenting the conjunct consonants along with an algorithm for identifying the correcttouching location. An accuracy rate of 91.27% is achieved.

  19. Excising a boosted rotating black hole with overlapping grids

    CERN Document Server

    Calabrese, G; Calabrese, Gioel; Neilsen, David

    2004-01-01

    We use the overlapping grids method to construct a fourth order accurate discretization of a first order reduction of the Klein-Gordon scalar field equation on a boosted spinning black hole blackground in axisymmetry. This method allows us to use a spherical outer boundary and excise the singularity from the domain with a spheroidal inner boundary which is moving with respect to the main grid. We discuss the use of higher order accurate energy conserving schemes to handle the axis of symmetry and compare it with a simpler technique based on regularity conditions. We also compare the single grid long term stability property of this formulation of the wave equation with that of a different first order reduction.

  20. Overlapping Clinical Features Between NAFLD and Metabolic Syndrome in Children

    Directory of Open Access Journals (Sweden)

    Anna Alisi

    2014-05-01

    Full Text Available Non-alcoholic fatty liver disease (NAFLD is a cluster of pathological liver conditions of emerging importance in overweight and obese children. NAFLD is associated with central obesity, insulin resistance, and dyslipidaemia, which are considered to be the main features of metabolic syndrome (MetS. Prevention of the adverse outcomes of NAFLD, as well as the risk of MetS, depends on the identification of genetic background and environmental factors that modulate susceptibility to these diseases. However, several lines of evidence highlight the strong correlation and co-currency of these two chronic diseases, both in children and in adults. In the present review, we provide an overview of the current clinical proofs on the link between NAFLD and MetS in children, with particular focus on all the possible overlapping features that connect them at paediatric age.

  1. Normalized Mutual Information to evaluate overlapping community finding algorithms

    CERN Document Server

    McDaid, Aaron F; Hurley, Neil

    2011-01-01

    Given the increasing popularity of algorithms for overlapping clustering, in particular in social network analysis, quantitative measures are needed to measure the accuracy of a method. Given a set of true clusters, and the set of clusters found by an algorithm, these sets of clusters must be compared to see how similar or different the sets are. A normalized measure is desirable in many contexts, for example assigning a value of 0 where the two sets are totally dissimilar, and 1 where they are identical. A measure based on normalized mutual information, [1], has recently become popular. We demonstrate unintuitive behaviour of this measure, and show how this can be corrected by using a more conventional normalization. We compare the results to that of other measures, such as the Omega index [2].

  2. Simultaneous Combined Myositis, Inflammatory Polyneuropathy, and Overlap Myasthenic Syndrome

    Directory of Open Access Journals (Sweden)

    Stéphane Mathis

    2016-01-01

    Full Text Available Immune-mediated neuromuscular disorders include pathologies of the peripheral nervous system, neuromuscular junction, and muscles. If overlap syndromes (or the association of almost two autoimmune disorders are recognized, the simultaneous occurrence of several autoimmune neuromuscular disorders is rare. We describe two patients presenting the simultaneous occurrence of inflammatory neuropathy, myositis, and myasthenia gravis (with positive acetylcholine receptor antibodies. For each patient, we carried out a pathological analysis (nerve and muscle and an electrophysiological study (and follow-up. To our knowledge, this is the first description of such a triple immune-mediated neuromuscular syndrome. We compared our observations with a few other cases of simultaneous diagnosis of two inflammatory neuromuscular disorders.

  3. Random Overlap Structures: Properties and Applications to Spin Glasses

    CERN Document Server

    Arguin, Louis-Pierre

    2010-01-01

    Random Overlap Structures (ROSt's) are random elements on the space of probability measures on the unit ball of a Hilbert space, where two measures are identified if they differ by an isometry. In spin glasses, they arise as natural limits of Gibbs measures under the appropriate algebra of functions. We prove that the so called `cavity mapping' on the space of ROSt's is continuous, leading to a proof of the stochastic stability conjecture for the limiting Gibbs measures of a large class of spin glass models. Similar arguments yield the proofs of a number of other properties of ROSt's that may be useful in future attempts at proving the ultrametricity conjecture. Lastly, assuming that the ultrametricity conjecture holds, the setup yields a constructive proof of the Parisi formula for the free energy of the Sherrington-Kirkpatrick model by making rigorous a heuristic of Aizenman, Sims and Starr.

  4. An edge density definition of overlapping and weighted graph communities

    CERN Document Server

    Ronhovde, Richard K Darst David R Reichman Peter

    2013-01-01

    Community detection in networks refers to the process of seeking strongly internally connected groups of nodes which are weakly externally connected. In this work, we introduce and study a community definition based on internal edge density. Beginning with the simple concept that edge density equals number of edges divided by maximal number of edges, we apply this definition to a variety of node and community arrangements to show that our definition yields sensible results. Our community definition is equivalent to that of the Absolute Potts Model community detection method (Phys. Rev. E 81, 046114 (2010)), and the performance of that method validates the usefulness of our definition across a wide variety of network types. We discuss how this definition can be extended to weighted, and multigraphs, and how the definition is capable of handling overlapping communities and local algorithms. We further validate our definition against the recently proposed Affiliation Graph Model (arXiv:1205.6228 [cs.SI]) and sho...

  5. A convergent overlapping domain decomposition method for total variation minimization

    KAUST Repository

    Fornasier, Massimo

    2010-06-22

    In this paper we are concerned with the analysis of convergent sequential and parallel overlapping domain decomposition methods for the minimization of functionals formed by a discrepancy term with respect to the data and a total variation constraint. To our knowledge, this is the first successful attempt of addressing such a strategy for the nonlinear, nonadditive, and nonsmooth problem of total variation minimization. We provide several numerical experiments, showing the successful application of the algorithm for the restoration of 1D signals and 2D images in interpolation/inpainting problems, respectively, and in a compressed sensing problem, for recovering piecewise constant medical-type images from partial Fourier ensembles. © 2010 Springer-Verlag.

  6. Correction of Overlapping Multispectral LIDAR Intensity Data: Polynomial Approximation of Range and Angle Effects

    Science.gov (United States)

    Yan, W. Y.; Shaker, A.

    2017-07-01

    Recent development of radiometric calibration, correction and normalization approaches have facilitated the use of monochromatic LiDAR intensity and waveform data for land surface analysis and classification. Despite the recent successful attempts, the majority of existing approaches are mainly tailor made for monochromatic LiDAR toward specific land surface scenario. In view of the latest development of multispectral LiDAR sensor, such as the Optech Titan manufactured by Teledyne Optech, a more generic approach should be developed so that the radiometric correction model is able to handle and compensate the laser energy loss with respect to different wavelengths. In this study, we propose a semi-physical approach that aims to utilize high order polynomial functions to model the distortion effects due to the range and the angle. To estimate the parameters of the respect polynomial functions for the range and angle, our approach first locates a pair of closest points within the overlapping LiDAR data strips and subsequently uses a non-linear least squares adjustment to retrieve the polynomial parameters based on the Levenberg-Marquardt algorithm. The approach was tested on a multispectral airborne LiDAR dataset collected by the Optech Titan for the Petawawa Research Forest located in Ontario, Canada. The experimental results demonstrated that the coefficient of variation of the intensity of channel 1 (1550 nm), channel 2 (1064 nm) and channel 3 (532 nm) were reduced by 0.1 % to 39 %, 10 % to 45 % and 12 % to 54 %, respectively. The striping noises, no matter found within single strip and overlapping strips, were significantly reduced after implementing the proposed radiometric correction.

  7. Amide-Exchange-Rate-Edited NMR (AERE-NMR) Experiment:A Novel Method for Resolving Overlapping Resonances

    Institute of Scientific and Technical Information of China (English)

    LIU Xue-Hui; LIN Dong-Hai

    2007-01-01

    This paper describes an amide-exchange-rate-edited (AERE) NMR method that can effectively alleviate the problem of resonance overlap for proteins and peptides. This method exploits the diversity of amide proton exchange rates and consists of two complementary experiments: (1) SEA (solvent exposed amide)-type NMR experiments to map exchangeable surface residues whose amides are not involved in hydrogen bonding, and (2) presat-type NMR experiments to map solvent inaccessibly buried residues or nonexchangeable residues located in hydrogen-bonded secondary structures with properly controlled saturation transfer via amide proton exchanges with the solvent. This method separates overlapping resonances in a spectrum into two complementary spectra. The AERE-NMR method was demonstrated with a sample of 15N/13C/2H(70%) labeled ribosome-inactivating protein trichosanthin of 247 residues.

  8. Candidates in Astroviruses, Seadornaviruses, Cytorhabdoviruses and Coronaviruses for +1 frame overlapping genes accessed by leaky scanning

    Directory of Open Access Journals (Sweden)

    Atkins John F

    2010-01-01

    Full Text Available Abstract Background Overlapping genes are common in RNA viruses where they serve as a mechanism to optimize the coding potential of compact genomes. However, annotation of overlapping genes can be difficult using conventional gene-finding software. Recently we have been using a number of complementary approaches to systematically identify previously undetected overlapping genes in RNA virus genomes. In this article we gather together a number of promising candidate new overlapping genes that may be of interest to the community. Results Overlapping gene predictions are presented for the astroviruses, seadornaviruses, cytorhabdoviruses and coronaviruses (families Astroviridae, Reoviridae, Rhabdoviridae and Coronaviridae, respectively.

  9. 乳酸杆菌表面结构和粘附特性的研究进展%Progress in research on surface structure and adhesion properties of Lactobacilli

    Institute of Scientific and Technical Information of China (English)

    佟盼盼; 刘莉; 杨桂连; 王春凤

    2012-01-01

    乳酸杆菌是人和动物肠道中重要的益生菌.乳酸杆菌的表面特性决定其对肠道的粘附和定植及生理功能的发挥.研究乳酸杆菌表面结构对了解乳酸杆菌的粘附过程具有重要意义.对近年来国外关于乳酸杆菌表面结构特征和理化性质的研究进行了概述,并探讨分析了乳酸杆菌表面结构与乳酸杆菌粘附特性之间潜在的关系.%Lactobacillus is a kind of important probiotics in gastrointestinal tracts of human and most animals. The surface properties of lactobacilli are of significant technological importance as they determine the interaction of the bacterial cells with the mucosa, and therefore influence their location in the gut and their functionality. Studying the surface of the bacteria is critical for understanding the adhesion process better. The progresses in the characterization of Lactobacillus surfaces abroad in recent years were summerized, and the potential relationship between the cells' physicochemical characteristics and their adhesive abilities were discussed in this paper.

  10. Advances in Studies of Cloud Overlap and Its Radiative Transfer in Climate Models

    Institute of Scientific and Technical Information of China (English)

    张华; 荆现文

    2016-01-01

    The latest advances in studies on the treatment of cloud overlap and its radiative transfer in global climate models are summarized. Developments with respect to this internationally challenging problem are described from aspects such as the design of cloud overlap assumptions, the realization of cloud overlap assumptions within climate models, and the data and methods used to obtain consistent observations of cloud overlap structure and radiative transfer in overlapping clouds. To date, there has been an appreciable level of achievement in studies on cloud overlap in climate models, demonstrated by the development of scientific assumptions (e.g., e-folding overlap) to describe cloud overlap, the invention and broad application of the fast radiative transfer method for overlapped clouds (Monte Carlo Independent Column Approximation), and the emergence of continuous 3D cloud satellite observation (e.g., CloudSat/CALIPSO) and cloud-resolving models, which provide numerous data valuable for the exact description of cloud overlap structure in climate models. However, present treatments of cloud overlap and its radiative transfer process are far from complete, and there remain many unsettled problems that need to be explored in the future.

  11. New strategies for designing inexpensive but selective bioadsorbants for environmental pollutants: Selection of specific ligands and their cell surface expression. 1998 annual progress report

    Energy Technology Data Exchange (ETDEWEB)

    Iverson, B.L.; Georgiou, G. [Univ. of Texas, Austin, TX (US); Ataai, M.M.; Koepsel, R.R. [Univ. of Pittsburgh, PA (US)

    1998-06-01

    'The broad, long term objective of the research plan is to develop exquisitely selective polypeptide metal chelators for the remediation of aqueous systems. A variety of polypeptide chelators will be developed and optimized ranging from antibodies to small peptides. Then, through unique molecular engineering approaches developed in the laboratories, the polypeptide chelators will be anchored directly on the surface of the cells that produce them. Thus, instead of using isolated biomolecules the authors will employ inexpensive genetically engineered whole cell adsorbents. Following a simple, easily scaleable treatment, the engineered cells can be used to manufacture an inexpensive, particulate adsorbent for metal removal. The authors are currently in year two of a three year program. Work has been focused on preparing the molecular biology constructs needed to carry out the optimization of a metal complex binding antibody, and on the isolation of a metal binding peptide.'

  12. Progress in the Characterization of the Surface Species in Activated Carbons by means of INS Spectroscopy Coupled with Detailed DFT Calculations

    Directory of Open Access Journals (Sweden)

    Andrea Piovano

    2015-01-01

    Full Text Available Activated carbons are materials with relevance in different industrial applications. Due to the inherent complexity and heterogeneity of their structures, an easy assignment of the species present on their surface has a challenging result. Only recently, with the possibility to collect well-resolved inelastic neutron spectra and to simulate by DFT methods more or less extended graphitic clusters, this task is starting to become feasible. Here we report our investigation on a steam activated carbon and we show that different vibrations in the region of out-of-plane C-H bending modes are specifically connected to hydrogen terminations belonging to extended and regular borders or to short and defective ones. Furthermore, simulations including heteroatoms such as oxygen allowed us to point out spectral regions with a contribution from carboxyl species.

  13. Attack surfaces

    DEFF Research Database (Denmark)

    Gruschka, Nils; Jensen, Meiko

    2010-01-01

    The new paradigm of cloud computing poses severe security risks to its adopters. In order to cope with these risks, appropriate taxonomies and classification criteria for attacks on cloud computing are required. In this work-in-progress paper we present one such taxonomy based on the notion...... of attack surfaces of the cloud computing scenario participants. © 2010 IEEE....

  14. 钛基种植体表面抗菌改性的研究进展%Research progress on antibacterial titanium-based implant surface modification

    Institute of Scientific and Technical Information of China (English)

    孙磊; 夏荣

    2015-01-01

    钛金属以其优异的生物相容性、高机械强度和良好的抗腐蚀性被广泛用于临床牙列缺损及牙列缺失的修复治疗,然而细菌容易聚集和黏附其表面,且钛金属自身不具有抗菌性能,是种植体周围炎和种植义齿修复失败的主要原因之一。钛表面抗菌改性可改变种植体表面的理化性能,抑制致病菌的黏附和聚集,提高种植义齿修复的成功率。钛种植体表面改性主要是将抗菌剂或有抗菌性能的物质通过羟磷灰石涂层、二氧化钛纳米管和脱乙酰壳多糖等具有一定抗菌性能的载体对钛金属基体进行表面修饰,从而赋予钛金属不同程度的抗菌性能。本文就基体、载体和抗菌剂三方面的钛基种植体表面改性等研究进展作一综述。%Titanium, with its excellent biocompatibility, high mechanical strength and good corrosion resistance, has been widely used in clinical and edentulous dentition defectrepair treatment. However, the high probability of assembling and adhering bacteria to its surface, together with the lack of antibacterial properties, makes it the main reason of inflammation around the implant denture and implant denture failure. Titanium surface antibacterial modification can alter the physical and chemical properties of the implant surface, inhibit bacteria adhesion and aggregation and improve the success rate of implant prosthesis. Surface modification of titanium implants, are mainly realized via adding antibacterial agent or substance with antibacterial properties to modify the titanium metal substrate surface by a certain carrier with antibacterial properties, such as hydroxyapatite coating, titanium oxide nanotubes

  15. 伯氏疏螺旋体外膜蛋白OspA研究进展%Progress in research of Borrelia burgdorferi ourter surface protein A

    Institute of Scientific and Technical Information of China (English)

    崔宇晖; 郭美华; 宝福凯; 柳爱华

    2015-01-01

    莱姆病(Lyme disease,LD)是由伯氏疏螺旋体感染蜱媒传播的人兽共患病.OspA (Outer surface proteinA)是伯氏疏螺旋体主要的外膜蛋白之一.作为主要的免疫原性蛋白,该蛋白有着独特的β-折叠和α-螺旋二级蛋白结构,并且在不同宿主体内有着戏剧性的时空表达规律.OspA具有良好的免疫原性和免疫保护性,因此成为良好的基因疫苗候选者.但OspA株间变异较大,探求流行地区菌株OspA的变异,对疫苗及诊断试剂的研制具有重要意义.本文就该蛋白的结构特点、时空表达特点、异质性、诊断及疫苗的应用等方面归纳总结了近年来的研究成果.

  16. Significance of frost action and surface soil characteristics to wind erosion at Rocky Flats, Colorado. Second progress report, October 1, 1975--May 30, 1976

    Energy Technology Data Exchange (ETDEWEB)

    Caine, N.; Morin, P.

    1976-01-01

    This report summarizes information on soil frost effects collected on Rocky Flats during the 1975-1976 winter. On a broad scale, work on soil textures at and just below the ground surface corroborates the conclusion reached earlier that the general frost susceptibility of the Rocky Flats soils is quite well keyed to topography. This is incorporated into a mapping procedure for potential soil frost activity which is applied to the northwestern part of the Rocky Flats area. On a site scale, instrumental records of weather conditions and soil responses have been maintained from October, 1975, to May, 1976, at the Lindsay Ranch study site, northwest of the Rocky Flats Plant. During that period, 33 needle ice events have been observed and recorded and are described in this report. A preliminary examination of wind data for the same period suggests that the soil in areas of natural vegetation on the site are not exposed to wind action. If, however, they were exposed, winds capable of eroding them are common.

  17. Overlap between systemic sclerosis and rheumatoid arthritis: a distinct clinical entity?

    Directory of Open Access Journals (Sweden)

    Alex Magno Coelho Horimoto

    Full Text Available ABSTRACT Introduction: Systemic sclerosis (SSc is an autoimmune disease of the connective tissue characterized by the triad of vascular injury, autoimmunity (cellular and humoral and tissue fibrosis. It is estimated that musculoskeletal pain is a common complaint of patients with SSc, ranging from 40 to 80%, and mainly in patients with early diffuse disease. Arthritis, clinically observed, may be a feature seen in the presentation of SSc, often leading to early diagnostic errors with rheumatoid arthritis (RA. In the course of the disease, arthritis is observed in 24–97% of patients with SSc. Objectives: To correlate the occurrence or nonoccurrence of arthritis in patients with SSc of the Midwest region of Brazil with possible distinct clinical and laboratory manifestations observed in three groups of patients. To report the frequency of true association between systemic sclerosis and rheumatoid arthritis in patients with clinically and radiologically observed synovitis. Methods: Sixty-one SSc patients were subsequently assessed every 3 months within 1 year, in order to clinically observe the occurrence of synovitis and its patterns of progression. Patients were divided into 3 groups: 41 patients with SSc without arthritis, 16 SSc patients with arthritis and 4 patients with overlap of SSc and RA. All patients underwent a radiological examination of the hands at the end of the study. Results: Among all patients evaluated, we found a female predominance (98.7%, mean age of 50.94 years, white color (49.2%, limited form of the disease (47.6%, time of diagnosis between 5 and 10 years (47.6% and duration of the disease of 8.30 years. Among all patients, 14 (22.9% had positive rheumatoid factor (RF, while among those with positive RF, only 10 patients had arthritis during one-year follow-up. The antibody anticitrulline (anti-CCP test was performed in 24 patients, being positive in 4 of them (16.7%, with positivity being observed only in patients with

  18. Research progress of surface modification of biomedical magnesium%生物医用镁的表面处理技术研究进展

    Institute of Scientific and Technical Information of China (English)

    冯爱玲; 憨勇

    2011-01-01

    Magnesium has good biocompatibility,biodegradation and proper mechanical properties and thereby has the potential to be used as biomedical materials.In this paper,the merits and shortcomings of magnesium as biomaterials are evaluated.Furthermore,different surface modification technologies,including electrochemical deposition and cathodic deposition,plasma immersion ion implantation and ion plating,anodization and micro-arc oxidation,chemical conversion to make coatings on magnesium and its alloys also are reviewed.The influence of as-prepared coating on corrosion properties and bioactivity is described.The prospects of magnesium as a new-type biodegradable hard tissue implant are presented.%由于镁具有优异的生物相容性、可生物降解性及适宜的力学性能而成为潜在的生物医用材料。本文对镁作为生物材料的优缺点进行了综合的评价,分类综述了用不同的表面改性技术在镁及其合金表面制备不同的涂层,包括电化学沉积法及阴极沉积法、离子注入及离子电镀法、阳极氧化及微弧氧化法以及化学转化法,评述了这些涂层对镁的腐蚀性能与生物活性的影响,并对镁作为一种新型可降解的硬组织植入材料的应用前景进行了展望。

  19. Successful COG8 and PDF overlap is mediated by alterations in splicing and polyadenylation signals.

    Science.gov (United States)

    Pereira-Castro, Isabel; Quental, Rita; da Costa, Luís T; Amorim, António; Azevedo, Luisa

    2012-02-01

    Although gene-free areas compose the great majority of eukaryotic genomes, a significant fraction of genes overlaps, i.e., unique nucleotide sequences are part of more than one transcription unit. In this work, the evolutionary history and origin of a same-strand gene overlap is dissected through the analysis of COG8 (component of oligomeric Golgi complex 8) and PDF (peptide deformylase). Comparative genomic surveys reveal that the relative locations of these two genes have been changing over the last 445 million years from distinct chromosomal locations in fish to overlapping in rodents and primates, indicating that the overlap between these genes precedes their divergence. The overlap between the two genes was initiated by the gain of a novel splice donor site between the COG8 stop codon and PDF initiation codon. Splicing is accomplished by the use of the PDF acceptor, leading COG8 to share the 3'end with PDF. In primates, loss of the ancestral polyadenylation signal for COG8 makes the overlap between COG8 and PDF mandatory, while in mouse and rat concurrent overlapping and non-overlapping Cog8 transcripts exist. Altogether, we demonstrate that the origin, evolution and preservation of the COG8/PDF same-strand overlap follow similar mechanistic steps as those documented for antisense overlaps where gain and/or loss of splice sites and polyadenylation signals seems to drive the process.

  20. Analytical and numerical solutions to the amplifier with incoherent pulse temporal overlap

    Science.gov (United States)

    Li, M.; Zhang, X. M.; Wang, Z. G.; Cui, X. D.; Yan, X. W.; Jiang, X. Y.; Zheng, J. G.; Wang, W.; Li, Mingzhong

    2017-01-01

    Serious pulse temporal overlap in amplifiers would result in the decrease of energy extraction efficiency and the increase of pulse-shape distortion (PSD). Precisely predicting pulse temporal overlap is of significance to an effective amplifier design. In this work, the analytical expressions with complete pulse overlap are derived and a numerical method is proposed to solve the case with partial temporal overlap for a double-pass Nd:YAG amplifier. Our studies, in which pulse temporal overlap is taken into account, can precisely predict the output energy and temporal shape, compared to the results from Hirano and other experiments. In addition, our numerical routes could provide the applicable range of analytical solutions to conventional Frantz-Nodvik equations in the case of pulse overlap, further extending the applicability and reducing computational costs. For given conditions, energy reduction and PSD are mainly determined by the overlap degree. For step-shaped pulse, we demonstrate that avoiding overlap in the peak pulse and allowing overlap in the foot pulse have small impacts on the energy extraction and PSD, which extends the range of duration of the pulse for a designed amplifier. Our investigations might provide an efficient way to carefully design a pulsed amplifier with controllable temporal overlap.

  1. Global malnutrition overlaps with pollinator-dependent micronutrient production

    Science.gov (United States)

    Chaplin-Kramer, Rebecca; Dombeck, Emily; Gerber, James; Knuth, Katherine A.; Mueller, Nathaniel D.; Mueller, Megan; Ziv, Guy; Klein, Alexandra-Maria

    2014-01-01

    Pollinators contribute around 10% of the economic value of crop production globally, but the contribution of these pollinators to human nutrition is potentially much higher. Crops vary in the degree to which they benefit from pollinators, and many of the most pollinator-dependent crops are also among the richest in micronutrients essential to human health. This study examines regional differences in the pollinator dependence of crop micronutrient content and reveals overlaps between this dependency and the severity of micronutrient deficiency in people around the world. As much as 50% of the production of plant-derived sources of vitamin A requires pollination throughout much of Southeast Asia, whereas other essential micronutrients such as iron and folate have lower dependencies, scattered throughout Africa, Asia and Central America. Micronutrient deficiencies are three times as likely to occur in areas of highest pollination dependence for vitamin A and iron, suggesting that disruptions in pollination could have serious implications for the accessibility of micronutrients for public health. These regions of high nutritional vulnerability are understudied in the pollination literature, and should be priority areas for research related to ecosystem services and human well-being. PMID:25232140

  2. Metabolic syndrome and polycystic ovary syndrome: an intriguing overlapping.

    Science.gov (United States)

    Caserta, Donatella; Adducchio, Gloria; Picchia, Simona; Ralli, Eleonora; Matteucci, Eleonora; Moscarini, Massimo

    2014-06-01

    Metabolic syndrome is an increasing pathology in adults and in children, due to a parallel rise of obesity. Sedentary lifestyle, food habits, cultural influences and also a genetic predisposition can cause dyslipidemia, hypertension, abdominal obesity and insulin resistance which are the two main features of metabolic syndrome. Polycystic ovary syndrome (PCOS) is a condition directly associated with obesity, insulin resistance (HOMA index) and metabolic syndrome, and it is very interesting for its relationship and overlap with the metabolic syndrome. The relationship between the two syndromes is mutual: PCOS women have a higher prevalence of metabolic syndrome and also women with metabolic syndrome commonly present the reproductive/endocrine trait of PCOS. Prevention and treatment of metabolic syndrome and PCOS are similar for various aspects. It is necessary to treat excess adiposity and insulin resistance, with the overall goals of preventing cardiovascular disease and type 2 diabetes and improving reproductive failure in young women with PCOS. First of all, lifestyle changes, then pharmacological therapy, bariatric surgery and laparoscopic ovarian surgery represent the pillars for PCOS treatment.

  3. Advanced UXO discrimination: resolving multiple targets and overlapping EMI signals

    Science.gov (United States)

    Shubitidze, Fridon; Barrowes, Benjamin E.; Shamatava, Irma; Fernandez, Juan Pablo; Bijamov, Alex; O'Neill, Kevin

    2011-06-01

    In this paper we employ advanced electromagnetic induction models to resolve multiple targets with overlapping EMI signals-i.e. to discriminate objects of interest, such as unexploded ordnance (UXO), from innocuous items. The models include a) a joint diagonalization (JD) technique that takes data from next-generation EMI sensors and uses the eigenvalues of the multistatic response matrix to estimate the number of potential targets, and b) the orthonormalized volume magnetic source (ONVMS) model, a physically complete, fast, and accurate forward model whose representation of a target's intrinsic EMI response is used to extract classification parameters. In the given approach the overall EMI inversion and classification problem proceeds as follows: first, the JD is applied to the data and the number of targets is estimated; once this is known, the ONVMS is combined with an optimization technique to yield the location and orientation of each buried object, as well as the amplitude of its ONVMS. Finally, a total ONVMS is calculated for each object and used as a discriminant to distinguish between UXO and non-UXO items and between different kinds of UXO. We illustrate the applicability of our multi-target analysis technique by using it on several teststand and live-site datasets collected with the TEMTADS sensor array. We end by demonstrating the superior performance of the ONVMS by applying it to multi-target blind-test data compiled at the Aberdeen Proving Ground test-stand facility.

  4. Disentangling the Overlap Between Employee Engagement and Passion

    Directory of Open Access Journals (Sweden)

    Gaja Zager Kocjan

    2015-07-01

    Full Text Available With the emergence of positive psychology and the subsequent positive organizational behavior movement, focusing on the employee experience and factors of positive psychological states in employees has come to the forefront. In recent years, several studies have emphasized the practical value of employee engagement and passion (the dualistic model of passion; Vallerand et al., 2003 in predicting various positive individual and organizational outcomes (e.g., performance, well-being. Although engagement and passion seem relatively easy to spot at first glance, they are rather difficult to define and distinguish one from another. Therefore, the aim of the present article is to provide a comprehensive discussion on the shared aspects and conceptual differences between these two constructs within the work environment. The most noticeable overlap is proposed to exist between engagement and harmonious passion. It concerns the common underlying development mechanism, a very strong motivational force to engage in one's work, strong identification with work, and similar relationships with various antecedents and consequences. It is suggested that broader scope theories (such as the self-determination theory should be taken into consideration in order to unify common findings from both theoretical backgrounds and overcome redundancy and the risk of multiplication of concepts in positive psychology.

  5. Optical axis jitter rejection for double overlapped adaptive optics systems

    Science.gov (United States)

    Luo, Qi; Luo, Xi; Li, Xinyang

    2016-04-01

    Optical axis jitters, or vibrations, which arise from wind shaking and structural oscillations of optical platforms, etc., cause a deleterious impact on the performance of adaptive optics systems. When conventional integrators are utilized to reject such high frequency and narrow-band disturbance, the benefits are quite small despite their acceptable capabilities to reject atmospheric turbulence. In our case, two suits of complete adaptive optics systems called double overlapped adaptive optics systems (DOAOS) are used to counteract both optical jitters and atmospheric turbulence. A novel algorithm aiming to remove vibrations is proposed by resorting to combine the Smith predictor and notch filer. With the help of loop shaping method, the algorithm will lead to an effective and stable controller, which makes the characteristics of error transfer function close to notch filters. On the basis of the spectral analysis of observed data, the peak frequency and bandwidth of vibrations can be identified in advance. Afterwards, the number of notch filters and their parameters will be determined using coordination descending method. The relationship between controller parameters and filtering features is discussed, and the robustness of the controller against varying parameters of the control object is investigated. Preliminary experiments are carried out to validate the proposed algorithms. The overall control performance of DOAOS is simulated. Results show that time delays are a limit of the performance, but the algorithm can be successfully implemented on our systems, which indicate that it has a great potential to reject jitters.

  6. A fuzzy approach to the Weighted Overlap Dominance model

    DEFF Research Database (Denmark)

    Franco de los Rios, Camilo Andres; Hougaard, Jens Leth; Nielsen, Kurt

    2013-01-01

    Decision support models are required to handle the various aspects of multi-criteria decision problems in order to help the individual understand its possible solutions. In this sense, such models have to be capable of aggregating and exploiting different types of measurements and evaluations in ...... is presented for ordering and identifying the best alternatives under an interactive procedure that takes into account the natural imprecision and relevance of information....... in an interactive way, where input data can take the form of uniquely-graded or interval-valued information. Here we explore the Weighted Overlap Dominance (WOD) model from a fuzzy perspective and its outranking approach to decision support and multidimensional interval analysis. Firstly, imprecision measures...... are introduced for characterizing the type of uncertainty being expressed by intervals, examining at the same time how the WOD model handles both non-interval as well as interval data, and secondly, relevance degrees are proposed for obtaining a ranking over the alternatives. Hence, a complete methodology...

  7. Understanding asthma-chronic obstructive pulmonary disease overlap syndrome.

    Science.gov (United States)

    Wurst, Keele E; Kelly-Reif, Kaitlin; Bushnell, Greta A; Pascoe, Steven; Barnes, Neil

    2016-01-01

    Asthma-chronic obstructive pulmonary disease overlap syndrome (ACOS) is a loosely-defined clinical entity referring to patients who exhibit characteristics of both asthma and chronic obstructive pulmonary disease (COPD). Clinical definitions and classifications for ACOS vary widely, which impacts our understanding of prevalence, diagnosis and treatment of the condition. This literature review was therefore conducted to characterize the prevalence of ACOS and the effect of different disease definitions on these estimates, as this has not previously been explored. From an analysis of English language literature published from 2000 to 2014, the estimated prevalence of ACOS ranges from 12.1% to 55.2% among patients with COPD and 13.3%-61.0% among patients with asthma alone. This variability is linked to differences in COPD and asthma diagnostic criteria, disease ascertainment methods (spirometry-based versus clinical or symptom-based diagnoses and claims data), and population characteristics including age, gender and smoking. Understanding the reasons for differences in prevalence estimates of ACOS across the literature may help guide decision making on the most appropriate criteria for defining ACOS and aid investigators in designing future ACOS clinical studies aimed at effective treatment.

  8. A MODEL FOR OVERLAPPING TRIGRAM TECHNIQUE FOR TELUGU SCRIPT

    Directory of Open Access Journals (Sweden)

    B.Vishnu Vardhan

    2007-09-01

    Full Text Available N-grams are consecutive overlapping N-character sequences formed from an input stream. N-grams are used as alternatives to word-based retrieval in a number of systems. In this paper we propose a model applicable to categorization of Telugu document. Telugu is an official language derived from ancient Brahmi script and also the official language of the state of Andhra Pradesh. Brahmi based script is noted for complex conjunct formations. The canonical structure is described as ((C C CV. The structure evolves any character from a set of basic syllables known as vowels and consonants where consonant, vowel (CV core is the basic unit optionally preceded by one or two consonants. A huge set of characters that resemble the phonetic nature with an equivalent character shape are derived from the canonical structure. Words formed from this set evolved into a large corpus. Stringent grammar rules in word formation are part of this corpus. Certain word combinations result in the formation of single word is to be addressed where the last character of the first word and first character of the successive word are combined. Keeping in view of these complexities we propose a trigram based system that provides a reasonable alternative to a word based system in achieving document categorization for the language Telugu.

  9. Evidence for partial overlap of male olfactory cues in lampreys

    Science.gov (United States)

    Buchinger, Tyler J.; Li, Ke; Huertas, Mar; Baker, Cindy F.; Jia, Liang; Hayes, Michael C.; Li, Weiming; Johnson, Nicholas S.

    2016-01-01

    Animals rely on a mosaic of complex information to find and evaluate mates. Pheromones, often comprised of multiple components, are considered to be particularly important for species-recognition in many species. While the evolution of species-specific pheromone blends is well-described in many insects, very few vertebrate pheromones have been studied in a macro-evolutionary context. Here, we report a phylogenetic comparison of multi-component male odours that guide reproduction in lampreys. Chemical profiling of sexually mature males from eleven species of lamprey, representing six of ten genera and two of three families, indicated the chemical profiles of sexually mature male odours are partially shared among species. Behavioural assays conducted with four species sympatric in the Laurentian Great Lakes indicated asymmetric female responses to heterospecific odours, where Petromyzon marinus were attracted to male odour collected from all species tested but other species generally preferred only the odour of conspecifics. Electro-olfactogram recordings from P. marinusindicated that although P. marinus exhibited behavioural responses to odours from males of all species, at least some of the compounds that elicited olfactory responses were different in conspecific male odours compared to heterospecific male odours. We conclude that some of the compounds released by sexually mature males are shared among species and elicit olfactory and behavioural responses in P. marinus, and suggest that our results provide evidence for partial overlap of male olfactory cues among lampreys. Further characterization of the chemical identities of odour components is needed to confirm shared pheromones among species.

  10. An algorithm of image segmentation for overlapping grain image

    Institute of Scientific and Technical Information of China (English)

    WANG Zhi; JIN Guang; SUN Xiao-wei

    2005-01-01

    Aiming at measurement of granularity size of nonmetal grain, an algorithm of image segmentation and parameter calculation for microscopic overlapping grain image was studied. This algorithm presents some new attributes of graph sequence from discrete attribute of graph,and consequently achieves the geometrical characteristics from input graph, and the new graph sequence in favor of image segmentation is recombined. The conception that image edge denoted with "twin-point" is put forward, base on geometrical characters of point, image edge is transformed into serial edge, and on recombined serial image edge, based on direction vector definition of line and some additional restricted conditions, the segmentation twin-points are searched with, thus image segmentation is accomplished. Serial image edge is transformed into twin-point pattern, to realize calculation of area and granularity size of nonmetal grain. The inkling and uncertainty on selection of structure element which base on mathematical morphology are avoided in this algorithm, and image segmentation and parameter calculation are realized without changing grain's self statistical characters.

  11. The overlapping host responses to bacterial cyclic dinucleotides.

    Science.gov (United States)

    Abdul-Sater, Ali A; Grajkowski, Andrzej; Erdjument-Bromage, Hediye; Plumlee, Courtney; Levi, Assaf; Schreiber, Michael T; Lee, Carolyn; Shuman, Howard; Beaucage, Serge L; Schindler, Christian

    2012-02-01

    Macrophages respond to infection with Legionella pneumophila by the induction of inflammatory mediators, including type I Interferons (IFN-Is). To explore whether the bacterial second messenger cyclic 3'-5' diguanylate (c-diGMP) activates some of these mediators, macrophages were infected with L. pneumophila strains in which the levels of bacterial c-diGMP had been altered. Intriguingly, there was a positive correlation between c-diGMP levels and IFN-I expression. Subsequent studies with synthetic derivatives of c-diGMP, and newly described cyclic 3'-5' diadenylate (c-diAMP), determined that these molecules activate overlapping inflammatory responses in human and murine macrophages. Moreover, UV crosslinking studies determined that both dinucleotides physically associate with a shared set of host proteins. Fractionation of macrophage extracts on a biotin-c-diGMP affinity matrix led to the identification of a set of candidate host binding proteins. These studies suggest that mammalian macrophages can sense and mount a specific inflammatory response to bacterial dinucleotides.

  12. The Resonance Overlap and Hill Stability Criteria Revisited

    CERN Document Server

    Ramos, X S; Beaugé, C

    2015-01-01

    We review the orbital stability of the planar circular restricted three-body problem, in the case of massless particles initially located between both massive bodies. We present new estimates of the resonance overlap criterion and the Hill stability limit, and compare their predictions with detailed dynamical maps constructed with N-body simulations. We show that the boundary between (Hill) stable and unstable orbits is not smooth but characterized by a rich structure generated by the superposition of different mean-motion resonances which does not allow for a simple global expression for stability. We propose that, for a given perturbing mass $m_1$ and initial eccentricity $e$, there are actually two critical values of the semimajor axis. All values $a a_{\\rm unstable}$ are unstable in the Hill sense. The first limit is given by the Hill-stability criterion and is a function of the eccentricity. The second limit is virtually insensitive to the initial eccentricity, and closely resembles a new resonance over...

  13. Notes on the Polynomial Identities in Random Overlap Structures

    Science.gov (United States)

    Sollich, Peter; Barra, Adriano

    2012-04-01

    In these notes we review first in some detail the concept of random overlap structure (ROSt) applied to fully connected and diluted spin glasses. We then sketch how to write down the general term of the expansion of the energy part from the Boltzmann ROSt (for the Sherrington-Kirkpatrick model) and the corresponding term from the RaMOSt, which is the diluted extension suitable for the Viana-Bray model. From the ROSt energy term, a set of polynomial identities (often known as Aizenman-Contucci or AC relations) is shown to hold rigorously at every order because of a recursive structure of these polynomials that we prove. We show also, however, that this set is smaller than the full set of AC identities that is already known. Furthermore, when investigating the RaMOSt energy for the diluted counterpart, at higher orders, combinations of such AC identities appear, ultimately suggesting a crucial role for the entropy in generating these constraints in spin glasses.

  14. CRISPR Detection From Short Reads Using Partial Overlap Graphs.

    Science.gov (United States)

    Ben-Bassat, Ilan; Chor, Benny

    2016-06-01

    Clustered regularly interspaced short palindromic repeats (CRISPR) are structured regions in bacterial and archaeal genomes, which are part of an adaptive immune system against phages. CRISPRs are important for many microbial studies and are playing an essential role in current gene editing techniques. As such, they attract substantial research interest. The exponential growth in the amount of bacterial sequence data in recent years enables the exploration of CRISPR loci in more and more species. Most of the automated tools that detect CRISPR loci rely on fully assembled genomes. However, many assemblers do not handle repetitive regions successfully. The first tool to work directly on raw sequence data is Crass, which requires reads that are long enough to contain two copies of the same repeat. We present a method to identify CRISPR repeats from raw sequence data of short reads. The algorithm is based on an observation differentiating CRISPR repeats from other types of repeats, and it involves a series of partial constructions of the overlap graph. This enables us to avoid many of the difficulties that assemblers face, as we merely aim to identify the repeats that belong to CRISPR loci. A preliminary implementation of the algorithm shows good results and detects CRISPR repeats in cases where other existing tools fail to do so.

  15. Interference-free acquisition of overlapping sequences in explicit spatial memory.

    Science.gov (United States)

    Eggert, Thomas; Drever, Johannes; Straube, Andreas

    2014-04-01

    Some types of human sequential memory, e.g. the acquisition of a new composition by a trained musician, seem to be very efficient in extending the length of a memorized sequence and in flexible reuse of known subsequences in a newly acquired sequential context. This implies that interference between known and newly acquired subsequences can be avoided even when learning a sequence which is a partial mutation of a known sequence. It is known that established motor sequences do not have such flexibility. Using learning of deferred imitation, the current study investigates the flexibility of explicit spatial memory by quantifying the interferences between successively acquired, partially overlapping sequences. After learning a spatial sequence on day 1, this sequence was progressively modified on day 2. On day 3, a retention test was performed with both the initial and the modified sequence. The results show that subjects performed very well on day 1 and day 2. No spatial interference between changed and unchanged targets was observed during the stepwise progressive modification of the reproduced sequence. Surprisingly, subjects performed well on both sequences on day 3. Comparison with a control experiment without intermediate mutation training showed that the initial training on day 1 did not proactively interfere with the retention of the modified sequence on day 3. Vice versa, the mutation training on day 2 did not interfere retroactively with the retention of the original sequence as tested on day 3. The results underline the flexibility in acquiring explicit spatial memory. Copyright © 2014 Elsevier B.V. All rights reserved.

  16. Ovarian cancer stem cells are enriched in side population and aldehyde dehydrogenase bright overlapping population.

    Directory of Open Access Journals (Sweden)

    Kazuyo Yasuda

    Full Text Available Cancer stem-like cells (CSCs/cancer-initiaiting cells (CICs are defined as a small population of cancer cells that have self-renewal capacity, differentiation potential and high tumor-initiating ability. CSCs/CICs of ovarian cancer have been isolated by side population (SP analysis, ALDEFLUOR assay and using cell surface markers. However, these approaches are not definitive markers for CSCs/CICs, and it is necessary to refine recent methods for identifying more highly purified CSCs/CICs. In this study, we analyzed SP cells and aldehyde dehydrogenese bright (ALDH(Br cells from ovarian cancer cells. Both SP cells and ALDH(Br cells exhibited higher tumor-initiating ability and higher expression level of a stem cell marker, sex determining region Y-box 2 (SOX2, than those of main population (MP cells and ALDH(Low cells, respectively. We analyzed an SP and ALDH(Br overlapping population (SP/ALDH(Br, and the SP/ALDH(Br population exhibited higher tumor-initiating ability than that of SP cells or ALDH(Br cells, enabling initiation of tumor with as few as 10(2 cells. Furthermore, SP/ADLH(Br population showed higher sphere-forming ability, cisplatin resistance, adipocyte differentiation ability and expression of SOX2 than those of SP/ALDH(Low, MP/ALDH(Br and MP/ALDH(Low cells. Gene knockdown of SOX2 suppressed the tumor-initiation of ovarian cancer cells. An SP/ALDH(Br population was detected in several gynecological cancer cells with ratios of 0.1% for HEC-1 endometrioid adenocarcinoma cells to 1% for MCAS ovary mucinous adenocarcinoma cells. Taken together, use of the SP and ALDH(Br overlapping population is a promising approach to isolate highly purified CSCs/CICs and SOX2 might be a novel functional marker for ovarian CSCs/CICs.

  17. Focal overlap gating in velocity map imaging to achieve high signal-to-noise ratio in photo-ion pump-probe experiments

    Science.gov (United States)

    Shivaram, Niranjan; Champenois, Elio G.; Cryan, James P.; Wright, Travis; Wingard, Taylor; Belkacem, Ali

    2016-12-01

    We demonstrate a technique in velocity map imaging (VMI) that allows spatial gating of the laser focal overlap region in time resolved pump-probe experiments. This significantly enhances signal-to-noise ratio by eliminating background signal arising outside the region of spatial overlap of pump and probe beams. This enhancement is achieved by tilting the laser beams with respect to the surface of the VMI electrodes which creates a gradient in flight time for particles born at different points along the beam. By suitably pulsing our microchannel plate detector, we can select particles born only where the laser beams overlap. This spatial gating in velocity map imaging can benefit nearly all photo-ion pump-probe VMI experiments especially when extreme-ultraviolet light or X-rays are involved which produce large background signals on their own.

  18. Focal overlap gating in velocity map imaging to achieve high signal-to-noise ratio in photo-ion pump-probe experiments

    CERN Document Server

    Shivaram, Niranjan; Cryan, James P; Wright, Travis W; Wingard, Taylor; Belkacem, Ali

    2016-01-01

    We demonstrate a new technique in velocity map imaging (VMI) that allows spatial gating of the laser focal overlap region in time resolved pump-probe experiments. This significantly enhances signal-to-noise ratio by eliminating background signal arising outside the region of spatial overlap of pump and probe beams. This enhancement is achieved by tilting the laser beams with respect to the surface of the VMI electrodes which creates a gradient in flight time for particles born at different points along the beam. By suitably pulsing our microchannel plate detector, we can select particles born only where the laser beams overlap. This spatial gating in velocity map imaging can benefit nearly all photoion pump-probe VMI experiments especially when extreme-ultraviolet (XUV) light or X-rays are involved which produce large background signals on their own.

  19. Application of the lamp mapping technique for overlap function for Raman lidar systems.

    Science.gov (United States)

    Walker, Monique; Venable, Demetrius; Whiteman, David N; Sakai, Tetsu

    2016-04-01

    Traditionally, the lidar water vapor mixing ratio (WVMR) is corrected for overlap using data from another instrument, such as a radiosonde. Here we introduce a new experimental method to determine the overlap function using the lamp mapping technique (LMT), which relies on the lidar optics and detection system. The LMT discussed here involves a standard halogen lamp being scanned over the aperture of a Raman lidar telescope in synchronization with the lidar detection system [Appl. Opt.50, 4622 (2011)APOPAI0003-693510.1364/AO.50.004622, Appl. Opt.53, 8538 (2014)APOPAI0003-693510.1364/AO.53.008535]. In this paper, we show results for a LMT-determined overlap function for individual channels, as well as a WVMR overlap function. We found that the LMT-determined WVMR overlap functions deviate within 5% of the traditional radiosonde-determined overlap.

  20. Research Progress in the Preparation Methods and Applications of the Superhydrophobic Surface for Metal Protection%金属防护用超疏水表面主要制备方法及应用研究进展

    Institute of Scientific and Technical Information of China (English)

    赵欢; 吕晓璇; 周圣文; 方亮; 王力

    2015-01-01

    金属及其合金制品的腐蚀给人类带来巨大危害. 主要从金属表面超疏水的角度探究金属的防护,在介绍超疏水表面相关理论的基础上,详细综述了国内外金属基体超疏水表面的最新研究进展和应用,讨论了化学腐蚀法、激光毛化技术、喷涂法、电化学技术、水热法、等离子体处理技术、置换沉积法、溶液浸泡法、复合法等超疏水表面制备技术的研究进展,这些技术都在一定程度上实现了金属表面超疏水性能,接触角达到150 °以上,滚动角小于10 °. 除此之外,还介绍了超疏水表面在装饰金属材料、耐腐蚀、自清洁、防结冰、抗菌等方面的应用. 最后指出了金属基体超疏水表面制备在工业应用中存在的缺陷,并对今后的发展方向进行了展望.%The corrosion of metals and their alloys has caused great harm to mankind. In this paper, we explored the protection of metals from the point of superhydrophobic metal surface. On the basis of the theory about superhydrophobic surface, the latest research progress and application of superhydrophobic surface on metal substrates were reviewed. Research progresses in prepara-tion methods of superhydrophobic surface such as chemical etching, laser texturing, spraying, electrochemical, hydrothermal, plasma treatment, replacement deposition, solution immersion and composite were discussed in detail. These methods mentioned above have achieved the superhydrophobic properties of the metals to a certain degree with the contact angle of more than 150 de-gree and sliding angle of less than 10 degree. Furthermore, this paper also introduced the applications of the superhydrophobic sur-face in decorating metal materials, corrosion resistance, self-cleaning, anti-freezing and anti-bacteria. At the end of the paper, the existing defects of superhydrophobic metal surface preparation in industrial application were pointed out, and the development di-rection in the

  1. First numerical experiences with overlap fermions based on the Brillouin kernel

    CERN Document Server

    Durr, Stephan

    2016-01-01

    Numerical experiences are reported with overlap fermions which employ the Brillouin action as a kernel. After discussing the dispersion relations of both the kernel and the resulting chiral action, some of the physics features are addressed on quenched backgrounds. We find that the overlap with Brillouin kernel is much better localized than the overlap with Wilson kernel. Also a preliminary account is given of the cost of the formulation, in terms of CPU time and memory.

  2. Morphological similarity and ecological overlap in two rotifer species.

    Directory of Open Access Journals (Sweden)

    Carmen Gabaldón

    Full Text Available Co-occurrence of cryptic species raises theoretically relevant questions regarding their coexistence and ecological similarity. Given their great morphological similitude and close phylogenetic relationship (i.e., niche retention, these species will have similar ecological requirements and are expected to have strong competitive interactions. This raises the problem of finding the mechanisms that may explain the coexistence of cryptic species and challenges the conventional view of coexistence based on niche differentiation. The cryptic species complex of the rotifer Brachionus plicatilis is an excellent model to study these questions and to test hypotheses regarding ecological differentiation. Rotifer species within this complex are filtering zooplankters commonly found inhabiting the same ponds across the Iberian Peninsula and exhibit an extremely similar morphology-some of them being even virtually identical. Here, we explore whether subtle differences in body size and morphology translate into ecological differentiation by comparing two extremely morphologically similar species belonging to this complex: B. plicatilis and B. manjavacas. We focus on three key ecological features related to body size: (1 functional response, expressed by clearance rates; (2 tolerance to starvation, measured by growth and reproduction; and (3 vulnerability to copepod predation, measured by the number of preyed upon neonates. No major differences between B. plicatilis and B. manjavacas were found in the response to these features. Our results demonstrate the existence of a substantial niche overlap, suggesting that the subtle size differences between these two cryptic species are not sufficient to explain their coexistence. This lack of evidence for ecological differentiation in the studied biotic niche features is in agreement with the phylogenetic limiting similarity hypothesis but requires a mechanistic explanation of the coexistence of these species not

  3. Negative Valve Overlap Reforming Chemistry in Low-Oxygen Environments

    Energy Technology Data Exchange (ETDEWEB)

    Szybist, James P [ORNL; Steeper, Richard R. [Sandia National Laboratories (SNL); Splitter, Derek A [ORNL; Kalaskar, Vickey B [ORNL; Pihl, Josh A [ORNL; Daw, C Stuart [ORNL

    2014-01-01

    Fuel injection into the negative valve overlap (NVO) period is a common method for controlling combustion phasing in homogeneous charge compression ignition (HCCI) and other forms of advanced combustion. When fuel is injected into O2-deficient NVO conditions, a portion of the fuel can be converted to products containing significant levels of H2 and CO. Additionally, other short chain hydrocarbons are produced by means of thermal cracking, water-gas shift, and partial oxidation reactions. The present study experimentally investigates the fuel reforming chemistry that occurs during NVO. To this end, two very different experimental facilities are utilized and their results are compared. One facility is located at Oak Ridge National Laboratory, which uses a custom research engine cycle developed to isolate the NVO event from main combustion, allowing a steady stream of NVO reformate to be exhausted from the engine and chemically analyzed. The other experimental facility, located at Sandia National Laboratories, uses a dump valve to capture the exhaust from a single NVO event for analysis. Results from the two experiments are in excellent trend-wise agreement and indicate that the reforming process under low-O2 conditions produces substantial concentrations of H2, CO, methane, and other short-chain hydrocarbon species. The concentration of these species is found to be strongly dependent on fuel injection timing and injected fuel type, with weaker dependencies on NVO duration and initial temperature, indicating that NVO reforming is kinetically slow. Further, NVO reforming does not require a large energy input from the engine, meaning that it is not thermodynamically expensive. The implications of these results on HCCI and other forms of combustion are discussed in detail.

  4. Capulet and Slingshot share overlapping functions during Drosophila eye morphogenesis

    Directory of Open Access Journals (Sweden)

    Lin Chiao-Ming

    2012-04-01

    Full Text Available Abstract Background CAP/Capulet (Capt, Slingshot (Ssh and Cofilin/Twinstar (Tsr are actin-binding proteins that restrict actin polymerization. Previously, it was shown that low resolution analyses of loss-of-function mutations in capt, ssh and tsr all show ectopic F-actin accumulation in various Drosophila tissues. In contrast, RNAi depletion of capt, tsr and ssh in Drosophila S2 cells all affect actin-based lamella formation differently. Whether loss of these three related genes might cause the same effect in the same tissue remains unclear. Methods Loss-of-function mutant clones were generated using the MARCM or EGUF system whereas overexpression clones were generated using the Flip-out system. Immunostaining were then performed in eye imaginal discs with clones. FRAP was performed in cultured eye discs. Results Here, we compared their loss-of-function phenotype at single-cell resolution, using a sheet of epithelial cells in the Drosophila eye imaginal disc as a model system. Surprisingly, we found that capt and ssh, but not tsr, mutant cells within and posterior to the morphogenetic furrow (MF shared similar phenotypes. The capt/ssh mutant cells possessed: (1 hexagonal cell packing with discontinuous adherens junctions; and (2 largely complementary accumulation of excessive phosphorylated myosin light chain (p-MLC and F-actin rings at the apical cortex. We further showed that the capt/ssh mutant phenotypes depended on the inactivation of protein kinase A (PKA and activation of Rho. Conclusions Although Capt, Ssh and Tsr were reported to negatively regulate actin polymerization, we found that Capt and Ssh, but not Tsr, share overlapping functions during eye morphogenesis.

  5. Long and narrow Josephson tunnel junctions of mixed overlap and inline character

    DEFF Research Database (Denmark)

    Olsen, O.H.; Samuelsen, Mogens Rugholm

    1983-01-01

    A model describing long Josephson junctions of mixed overlap and inline geometry is presented. The shape of the first zero field step is calculated for this model using a perturbation approach. The question of influence of external magnetic field on the maximum supercurrent is investigated for ov...... for overlap, inline, and mixed overlap-inline geometries. A linear dependence is found for the inline model and for mixed overlap-inline junctions in agreement with experiments. Journal of Applied Physics is copyrighted by The American Institute of Physics....

  6. Resolution of overlapping skin auto-fluorescence for development of non-invasive applications

    Science.gov (United States)

    Su, Yu-Zheng; Lin, Li-Wu; Chen, Chuen-Yau; Hung, Min-Wei; Huang, Kuo-Cheng

    2010-08-01

    Skin auto-fluorescence spectra can provide useful biological information, but the obtained spectrum is overlapped and is difficult to distinguish each contributed component. We applied the genetic algorithm to decompose the overlapping spectrum. First, we simulate the overlapping spectral to confirm our feasible algorithm. The skin auto-fluorescence spectra were obtained from the normal human skin with 337 nm excitation light source. The nicotinamide adenine dinucleotid (NADH) and flavin adenine dinucleotide (FAD) are accurately decomposed and demonstrated. The developed algorithm can be widely applied to achieve qualitative and quantitative analysis for overlapping spectra.

  7. [Progress in eyeglass optics].

    Science.gov (United States)

    Köppen, W

    1995-08-01

    In this article product developments for ophthalmic lenses are discussed: new materials, designs and coatings. High-index plastic substrates allow to offer corrections which are simultaneously light and thin and for the first time there are high performant plastic photochromic lenses. Head and eye movements with latest generation's progressives are very similar to natural vision behaviour. Special aspheric designs have been developed for comfortable vision for near and intermediate distances. Finally there are new coatings which protect the high quality surfaces of plastic lenses distinctly longer than before.

  8. Large gene overlaps in prokaryotic genomes: result of functional constraints or mispredictions?

    Directory of Open Access Journals (Sweden)

    Harrington Eoghan D

    2008-07-01

    Full Text Available Abstract Background Across the fully sequenced microbial genomes there are thousands of examples of overlapping genes. Many of these are only a few nucleotides long and are thought to function by permitting the coordinated regulation of gene expression. However, there should also be selective pressure against long overlaps, as the existence of overlapping reading frames increases the risk of deleterious mutations. Here we examine the longest overlaps and assess whether they are the product of special functional constraints or of erroneous annotation. Results We analysed the genes that overlap by 60 bps or more among 338 fully-sequenced prokaryotic genomes. The likely functional significance of an overlap was determined by comparing each of the genes to its respective orthologs. If a gene showed a significantly different length from its orthologs it was considered unlikely to be functional and therefore the result of an error either in sequencing or gene prediction. Focusing on 715 co-directional overlaps longer than 60 bps, we classified the erroneous ones into five categories: i 5'-end extension of the downstream gene due to either a mispredicted start codon or a frameshift at 5'-end of the gene (409 overlaps, ii fragmentation of a gene caused by a frameshift (163, iii 3'-end extension of the upstream gene due to either a frameshift at 3'-end of a gene or point mutation at the stop codon (68, iv Redundant gene predictions (4, v 5' & 3'-end extension which is a combination of i and iii (71. We also studied 75 divergent overlaps that could be classified as misannotations of group i. Nevertheless we found some convergent long overlaps (54 that might be true overlaps, although an important part of convergent overlaps could be classified as group iii (124. Conclusion Among the 968 overlaps larger than 60 bps which we analysed, we did not find a single real one among the co-directional and divergent orientations and concluded that there had been an

  9. Characterization of sputum biomarkers for asthma–COPD overlap syndrome

    Directory of Open Access Journals (Sweden)

    Gao J

    2016-09-01

    Full Text Available Jing Gao,1 Hiroshi Iwamoto,2 Jukka Koskela,3 Harri Alenius,4 Noboru Hattori,2 Nobuoki Kohno,5 Tarja Laitinen,6 Witold Mazur,1 Ville Pulkkinen1 1Heart and Lung Center, University of Helsinki and Helsinki University Hospital, Helsinki, Finland; 2Department of Molecular and Internal Medicine, Graduate School of Biomedical Sciences, Hiroshima University, Hiroshima, Japan; 3Clinical Research Unit of Pulmonary Diseases and Division of Pulmonology, Heart and Lung Center, University of Helsinki and Helsinki University Hospital, 4Unit of Systems Toxicology, Finnish Institute of Occupational Health, Helsinki, Finland; 5Hiroshima Cosmopolitan University, Hiroshima, Japan; 6Department of Pulmonary Diseases and Clinical Allergology, Turku University Hospital, University of Turku, Turku, Finland Abstract: Asthma–COPD overlap syndrome (ACOS is a commonly encountered chronic airway disease. However, ACOS is still a consensus-based clinical phenotype and the underlying inflammatory mechanisms are inadequately characterized. To clarify the inflammatory mediatypical for ACOS, five biomarkers, namely interleukin (IL-13, myeloperoxidase (MPO, neutrophil gelatinase-associated lipocalin (NGAL, chitinase-like protein (YKL-40, and IL-6, were selected. This study hypothesized that sputum biomarkers relevant for airway inflammation in asthma (IL-13, COPD (MPO, NGAL, or in both asthma and COPD (YKL-40, IL-6 could be used to differentiate ACOS from COPD and asthma. The aim of this study was to characterize the inflammatory profile and improve the recognition of ACOS. Induced sputum levels of IL-13, MPO, NGAL, YKL-40, and IL-6 were measured by enzyme-linked immunosorbent assay/Luminex assay in a Finnish discovery cohort (n=90 of nonsmokers, smokers, and patients with asthma, COPD, and ACOS and validated in a Japanese cohort (n=135. The classification accuracy of potential biomarkers was compared with area under the receiver operating characteristic curves. Only sputum NGAL

  10. What pulmonologists think about the asthma–COPD overlap syndrome

    Science.gov (United States)

    Miravitlles, Marc; Alcázar, Bernardino; Alvarez, Francisco Javier; Bazús, Teresa; Calle, Myriam; Casanova, Ciro; Cisneros, Carolina; de-Torres, Juan P; Entrenas, Luis M; Esteban, Cristóbal; García-Sidro, Patricia; Cosio, Borja G; Huerta, Arturo; Iriberri, Milagros; Izquierdo, José Luis; López-Viña, Antolín; López-Campos, José Luis; Martínez-Moragón, Eva; Pérez de Llano, Luis; Perpiñá, Miguel; Ros, José Antonio; Serrano, José; Soler-Cataluña, Juan José; Torrego, Alfons; Urrutia, Isabel; Plaza, Vicente

    2015-01-01

    Background Some patients with COPD may share characteristics of asthma; this is the so-called asthma–COPD overlap syndrome (ACOS). There are no universally accepted criteria for ACOS, and most treatments for asthma and COPD have not been adequately tested in this population. Materials and methods We performed a survey among pulmonology specialists in asthma and COPD aimed at collecting their opinions about ACOS and their attitudes in regard to some case scenarios of ACOS patients. The participants answered a structured questionnaire and attended a face-to-face meeting with the Metaplan methodology to discuss different aspects of ACOS. Results A total of 26 pulmonologists with a mean age of 49.7 years participated in the survey (13 specialists in asthma and 13 in COPD). Among these, 84.6% recognized the existence of ACOS and stated that a mean of 12.6% of their patients might have this syndrome. In addition, 80.8% agreed that the diagnostic criteria for ACOS are not yet well defined. The most frequently mentioned characteristics of ACOS were a history of asthma (88.5%), significant smoking exposure (73.1%), and postbronchodilator forced expiratory volume in 1 second/forced vital capacity <0.7 (69.2%). The most accepted diagnostic criteria were eosinophilia in sputum (80.8%), a very positive bronchodilator test (69.2%), and a history of asthma before 40 years of age (65.4%). Up to 96.2% agreed that first-line treatment for ACOS was the combination of a long-acting β2-agonist and inhaled steroid, with a long-acting antimuscarinic agent (triple therapy) for severe ACOS. Conclusion Most Spanish specialists in asthma and COPD agree that ACOS exists, but the diagnostic criteria are not yet well defined. A previous history of asthma, smoking, and not fully reversible airflow limitation are considered the main characteristics of ACOS, with the most accepted first-line treatment being long-acting β2-agonist/inhaled corticosteroids. PMID:26270415

  11. [Progressive supranuclear palsy: what's new?].

    Science.gov (United States)

    Levy, Richard

    2011-06-01

    Progressive supranuclear palsy (PSP) has been described as a clinical syndrome characterized by an impairment of voluntary control of gaze (supranuclear palsy), postural and gait instability, and behavioral and cognitive deficits including a frontal syndrome and psychic retardation. However, in the recent years, at least four other clinical forms of PSP have been recognized: PSP-Parkinsonism, "pure akinesia with gait freezing", PSP with cortico-basal syndrome, and PSP with speech apraxia. PSP-Parkinsonism mimics the signs and symptoms of idiopathic Parkinson's disease, including a significant reactivity to levodopa. "Pure akinesia with gait freezing" is characterized by a difficulty of self-initiation of motor programs, usually walking program. PSP with cortico-basal syndrome mimics cortico-basal degeneration (CBD) in that unilateral or asymmetric limb dystonia and apraxia are prominent signs. PSP with speech apraxia is an isolated syndrome of progressive anarthria. All these clinical syndromes are due to brain accumulation of phosphorylated tau protein. The differences in clinical expression within the framework of PSP can be explained by the differences in the topographical distribution of the lesions. PSP is considered as a primary tau disease ("tauopathy") such as CBD and some forms of fronto-temporal lobar degeneration. At the level of neuropathology, the pattern of tau abnormal inclusions differentiates PSP from other tau diseases, but some overlaps are reported. Moreover, several of the clinical forms of PSP partially or fully overlap with the other tauopathies. As a whole, the emergence of new clinical forms of PSP challenges the nosology of tauopathies and our understanding of these diseases.

  12. Research Progress in Enhanced Thin Film Solar Cells Performances by Surface Plasmonic%表面等离子体激元增强薄膜太阳电池研究进展

    Institute of Scientific and Technical Information of China (English)

    陈凤翔; 汪礼胜; 祝霁洺

    2011-01-01

    表面等离子体激元共振是金属纳米结构非常独特的光学特性,对基于表面等离子体激元共振的纳米结构体系的研究已形成了一门新兴的学科,即表面等离子体光子学.可以利用金属纳米颗粒光散射、近场增强以及高度局域的表面等离子体极化激元增强薄膜太阳电池光吸收,提高电池转换效率.当前,表面等离子体光子学应用于太阳电池的设计已成为国际上光伏研究迅猛发展的一个热点.文章主要介绍表面等离子体激元增强薄膜太阳电池光吸收的原理及其在光伏器件中应用的最新研究进展.%Surface plasmons resonance is an unique optical property of metallic nanostructures. The recent extensive research on surface plasmons in metallic nanostructures has merged into a new subject, named plasmonics. By using light trapping through the resonant scattering and the near field enhancement in arrays of metal nanoparticles, or by coupling light into surface plasmon polaritons modes that propagate in the plane of the semiconductor layer, the enhancement of light absorption and the improvement of conversion efficiency in thin film solar cells are becoming possible. Currently, plasmonics for solar cell design has become an international research field of photovoltaie devices. In this paper, the principle of surface plasmons enhancement light absorption of thin film solar cells and the recent progress of applications in photovoltaic devices are reviewed.

  13. Downsizing annuloplasty in ischemic mitral regurgitation: double row overlapping suture to avoid ring disinsertion in valve repair.

    Science.gov (United States)

    Nappi, Francesco; Spadaccio, Cristiano; Al-Attar, Nawwar; Chello, Massimo; Lusini, Mario; Barbato, Raffaele; Acar, Christophe

    2014-11-01

    The long-term outcomes of undersizing annuloplasty for the treatment of ischemic mitral regurgitation (IMR) is affected by the progressive dilation of the annulus, which carries increased risk for ring disinsertion. Reasons underlying this phenomenon might be found in the excess of physical stress on the annuloplasty sutures during the ventricular remodeling process. We report a technique based on the placement of a double row of overlapping sutures aiming at reducing the potential for ring disinsertion. Eleven patients with IMR undergoing mitral valve repair associated with coronary bypass grafting were treated with this technique and echocardiographically followed up at 6 and 12 months. The overall annular dimension decreased significantly with a significant reduction of the tenting area and no recurrence of mitral regurgitation at 1 year. A double row of overlapping sutures allowed firm attachment of the prosthetic ring while downsizing the annulus in IMR, limiting the consequences of changes in subannular ventricular geometry. This technique might therefore be considered a useful aid during mitral valve repair.

  14. Overlapping Cardiac Programs in Heart Development and Regeneration

    Institute of Scientific and Technical Information of China (English)

    Yi-Song Zhen; Qing Wu; Cheng-Lu Xiao; Nan-Nan Chang; Xu Wang; Lei Lei; Xiaojun Zhu; Jing-Wei Xiong

    2012-01-01

    Gaining cellular and molecular insights into heart development and regeneration will likely provide new therapeutic targets and opportunities for cardiac regenerative medicine,one of the most urgent clinical needs for heart failure.Here we present a review on zebrafish heart development and regeneration,with a particular focus on early cardiac progenitor development and their contribution to building embryonic heart,as well as cellular and molecular programs in adult zebrafish heart regeneration.We attempt to emphasize that the signaling pathways shaping cardiac progenitors in heart development may also be redeployed during the progress of adult heart regeneration.A brief perspective highlights several important and promising research areas in this exciting field.

  15. EFFECT OF Z-PINS' DIAMETER, SPACING AND OVERLAP LENGTH ON CONNECTING PERFORMANCE OF CMC SINGLE LAP JOINT

    Institute of Scientific and Technical Information of China (English)

    Yongqiang Tao; Guiqiong Jiao; Bo Wang; Yanjun Chang

    2008-01-01

    The effect of through-thickness reinforcement by composite pins (Z-pins) on the static tensile strength and failure mechanisms of the joints made from ceramic matrix composite (CMC) is investigated.Overlap length of the single lap joint is 15 mm,20 mm,23 mm,37 mm,and 60 mm,respectively.The experimcntal results indicate that the final failure modes of the joints can be divided into twó groups,(a) the bond-line stops debonding until crack encounters Z-pins;and then the adherends break at the location of Z-pins,when overlap length is more than 20 mm;(b) the bond-line detaches entirely and Z-pins are drawn from adherends,when overlap length is equal to 15 mm.A simple efficient computational approach is presented for analyzing the benefit of through-thickness pins for restricting failure in the single lap joints.Here,the mechanics problem is simplified by representing the effect of the pins by tractions acting on the fracture surfaces of the cracked bond-line.The tractions are prescribed as functions of the crack displacement,which are available in simple forms that summarize the complex deformations to a reasonable accuracy.The resulting model can be used to track the evolution of complete failure mechanisms,for example,bond-line initial delamination and ultimate failure associated with Z-pin pullout,ultimate failure of the adherends.The paper simulates connecting performance of the single lap joints with different Z-pins' diameter,spacing and overlap length;the numerical results agree with the experimental results;the numerical results indicate enlarging diameter and decreasing spacing of Z-pins are in favor of improving the connecting performance of the joints.By numerical analysis method,the critical overlap length that lies between two final failure modes is between 18 mm and 19 mm,when Z-pins' diameter and spacing are 0.4 ram,5 ram,respectively.

  16. The structural dynamics of α-tropomyosin on F-actin shape the overlap complex between adjacent tropomyosin molecules

    Science.gov (United States)

    Lehman, William; Li, Xiaochuan (Edward); Orzechowski, Marek; Fischer, Stefan

    2013-01-01

    Coiled-coil tropomyosin, localized on actin filaments in virtually all eukaryotic cells, serves as a gatekeeper regulating access of the motor protein myosin and other actin-binding proteins onto the thin filament surface. Tropomyosin's modular pseudo-repeating pattern of approximately 39 amino acid residues is designed to allow binding of the coiled-coil to successive actin subunits along thin filaments. Even though different tropomyosin isoforms contain varying numbers of repeat modules, the pseudo-repeat length, in all cases, matches that of a single actin subunit. Thus, the seven pseudo-repeats of 42 nm long muscle tropomyosin bind to seven successive actin subunits along thin filaments, while simultaneously bending into a super-helical conformation that is preshaped to the actin filament helix. In order to form a continuous cable on thin filaments that is free of gaps, adjacent tropomyosin molecules polymerize head-to-tail by means of a short (∼9 residue) overlap. Several laboratories have engineered peptides to mimic the N- and C-terminal tropomyosin association and to characterize the overlap structure. All overlapping domains examined show a compact N-terminal coiled-coil inserting into a partially opened C-terminal partner, where the opposing coiled-coils at the overlap junction face each other at up to ∼90° twist angles. Here, Molecular Dynamics (MD) simulations were carried out to determine constraints on the formation of the tropomyosin overlap complex and to assess the amount of twisting exhibited by full-length tropomyosin when bound to actin. With the exception of the last 20 to 40 C- and N-terminal residues, we find that the average tropomyosin structure closely resembles a “canonical” model proposed in the classic work of McLachlan and Stewart, displaying perfectly symmetrical supercoil geometry matching the F-actin helix with an integral number of coiled-coil turns, a coiled-coil helical pitch of 137 Å, a superhelical pitch of 770

  17. 地表水酸化的研究进展及其湖泊酸化的环境信息研究%RESEARCH PROGRESS IN SURFACE WATER ACIDIFICATION AND STUDY ON ENVIRONMENTAL INFORMATION FROM LAKE ACIDIFICATION

    Institute of Scientific and Technical Information of China (English)

    王云飞; 朱育新; 尹宇; 潘红玺

    2001-01-01

    通过对发达资本主义国家在其工业化进程中产生的地表水酸化、资源与环境的破坏以及相关研究进展等的简介,审视我国大气污染、酸雨的发展趋势,预估部分酸雨区存在地表水酸化的潜在危险性。据此以云南高原湖泊洱海和阳宗海为例,从湖水矿化度、SO2-4离子浓度的动态变化和沉积记录的磁化率变化等分析研究,评述湖泊酸化的早期表现和判别标志。%The present paper reviewed the resources and environment destruction resulted from surface water acidification during the history of development in industrialized countries as well as concerning research progress.The deliberation on air pollution and acid precipitation spread tendency in China showed that there is potential danger which surface water would be acidified in some part of acid precipitation area in China.Erhai Lake and Yangzonghai Lake are used as examples.Early-stage expression of lake acidification and its indicators are appraised,by analysis the evolution of TDS and SO2-4 concentration in the lake water and the change of magnetic susceptibility in the sediment.

  18. [The automatic iris map overlap technology in computer-aided iridiagnosis].

    Science.gov (United States)

    He, Jia-feng; Ye, Hu-nian; Ye, Miao-yuan

    2002-11-01

    In the paper, iridology and computer-aided iridiagnosis technologies are briefly introduced and the extraction method of the collarette contour is then investigated. The iris map can be overlapped on the original iris image based on collarette contour extraction. The research on collarette contour extraction and iris map overlap is of great importance to computer-aided iridiagnosis technologies.

  19. Decoding Overlapping Memories in the Medial Temporal Lobes Using High-Resolution fMRI

    Science.gov (United States)

    Chadwick, Martin J.; Hassabis, Demis; Maguire, Eleanor A.

    2011-01-01

    The hippocampus is proposed to process overlapping episodes as discrete memory traces, although direct evidence for this in human episodic memory is scarce. Using green-screen technology we created four highly overlapping movies of everyday events. Participants were scanned using high-resolution fMRI while recalling the movies. Multivariate…

  20. Overlap relation between free-space Laguerre Gaussian modes and step-index fiber modes

    CSIR Research Space (South Africa)

    Bruning, R

    2015-09-01

    Full Text Available We investigated the overlap relation of the free-space Laguerre–Gaussian modes to the corresponding linearly polarized modes of a step-index fiber. To maximize the overlap for an efficient coupling of the free-space modes into a fiber, the scale...

  1. Steric-effect-induced enhancement of electrical-double-layer overlapping phenomena

    NARCIS (Netherlands)

    Das, Siddhartha; Chakraborty, Suman

    2011-01-01

    In this paper, we demonstrate that nontrivial interactions between steric effect and electrical-double-layer (EDL) overlap phenomena may augment the effective extent of EDL overlap in narrow fluidic confinements to a significant extent by virtue of rendering the channel centerline potential tending

  2. Perceived Non-Overlap of Objects in an Audiovisual Stream/Bounce Display

    Directory of Open Access Journals (Sweden)

    Yousuke Kawachi

    2011-10-01

    Full Text Available In a stream/bounce display in which two identical visual objects move toward each other, coincide (completely overlap, and then move apart, the objects can be perceived as either streaming through or bouncing off each other. Despite the perceptual ambiguity in this display, the streaming percept is dominant. However, a sound burst presented at the time that the objects coincide facilitates the bouncing percept. Herein, we report a perceptual phenomenon in which the overlap between objects is illusorily perceived as a non-overlap in the stream/bounce display accompanied with sound. In the experiment, the amount of overlap between two objects was systematically manipulated in the presence/absence of a sound. Observers were asked to judge whether the two objects overlapped with each other and then asked whether the objects appeared to stream through or bounce off each other. The results were consistent with those of previous studies showing that sound promoted the bouncing percept. Most importantly, the sound presentation facilitated the perception of a non-overlap between the objects instead of a physical overlap, suggesting that the momentary overlap was inadequately perceived. We discuss the possibility that an abrupt sound temporally interrupts visual processing such as the formation of dynamic object representations.

  3. Locating protein-coding sequences under selection for additional, overlapping functions in 29 mammalian genomes

    DEFF Research Database (Denmark)

    Lin, Michael F; Kheradpour, Pouya; Washietl, Stefan

    2011-01-01

    synonymous constraint in these regions reflects selection on overlapping functional elements including splicing regulatory elements, dual-coding genes, RNA secondary structures, microRNA target sites, and developmental enhancers. Our results show that overlapping functional elements are common in mammalian...

  4. Capitalizing on the Overlap between Instructional Technology and Human Resource Development: A Potential Opportunity

    Science.gov (United States)

    Demps, Elaine L.

    2008-01-01

    This article explores the apparent overlap between the fields of instructional technology (IT) and human resource development (HRD) and offers a preliminary conceptualization of how to capitalize on the overlap through graduate academic curricula, where IT and HRD practitioners and scholars are developed. This conceptualization was formed by first…

  5. Research progress of fillers to thermal conductive polymer and its surface treatment%聚合物导热材料用填料及其表面处理的研究进展

    Institute of Scientific and Technical Information of China (English)

    方万漂; 郑京连; 黄志杰; 郑友明; 彭建文

    2015-01-01

    The application background and mechanism of polymer heat conduction material was summarized ,and the important role of thermal conductive filler were analyzed.New progress of preparation and its thermal conductivity at home and abroad was introduced.The summeriaztion of the thermal fillers were mainly about its types,composite technologies and surface treatment methods . Finally,the deficiency of this kind of material was put forward and the countermeasures were proposed,then the research trend of the thermal conductive polymer material was prospected.%概述了聚合物导热材料的应用背景及其导热机理,分析了导热填料在材料中的重要性,并就聚合物导热材料的制备及近年来国内外有关其导热系数取得的新成果进行了介绍.重点从导热填料的分类、复配技术及表面处理方法三方面综述了聚合物导热材料的研究进展,提出了聚合物导热材料尚存在的不足以及解决方法,并对未来导热材料研究趋势进行了展望.

  6. The Influence of Sex and Season on Conspecific Spatial Overlap in a Large, Actively-Foraging Colubrid Snake

    Science.gov (United States)

    Bauder, Javan M.; Breininger, David R.; Bolt, M. Rebecca; Legare, Michael L.; Jenkins, Christopher L.; Rothermel, Betsie B.; McGarigal, Kevin

    2016-01-01

    Understanding the factors influencing the degree of spatial overlap among conspecifics is important for understanding multiple ecological processes. Compared to terrestrial carnivores, relatively little is known about the factors influencing conspecific spatial overlap in snakes, although across snake taxa there appears to be substantial variation in conspecific spatial overlap. In this study, we described conspecific spatial overlap of eastern indigo snakes (Drymarchon couperi) in peninsular Florida and examined how conspecific spatial overlap varied by sex and season (breeding season vs. non-breeding season). We calculated multiple indices of spatial overlap using 6- and 3-month utilization distributions (UD) of dyads of simultaneously adjacent telemetered snakes. We also measured conspecific UD density values at each telemetry fix and modeled the distribution of those values as a function of overlap type, sex, and season using generalized Pareto distributions. Home range overlap between males and females was significantly greater than overlap between individuals of the same sex and male home ranges often completely contained female home ranges. Male home ranges overlapped little during both seasons, whereas females had higher levels of overlap during the non-breeding season. The spatial patterns observed in our study are consistent with those seen in many mammalian carnivores, in which low male-male overlap and high inter-sexual overlap provides males with greater access to females. We encourage additional research on the influence of prey availability on conspecific spatial overlap in snakes as well as the behavioral mechanisms responsible for maintaining the low levels of overlap we observed. PMID:27490346

  7. Non-overlapped random decrement technique for parameter identification in operational modal analysis

    Science.gov (United States)

    Zhang, Y.; Song, H. W.

    2016-03-01

    The random decrement technique (RDT) is used to estimate free vibration response from output data generated by Gaussian white noise. The principle is to decay the excitation via averaging of segments in output data. With RDT, the triggering condition for determining the initial points of segments causes overlap during averaging; the consequence is a residual excitation, peaking at the first natural frequency. This paper presents a modified RDT with non-overlapped segments to eliminate this peak. Numerical comparison between non-overlapped RDT (NRDT) and RDT shows the accuracy improvement of damping. However, time history data is sometimes not long enough in NRDT, which results in an inevitable overlap. In order to keep the accuracy of NRDT, the first natural period is viewed as the critical length between adjacent initial points to distinguish the inevitable overlap from that in RDT.

  8. Food niche overlap among neotropical frugivorous bats in Costa Rica

    Directory of Open Access Journals (Sweden)

    Jorge E Lopez

    2007-03-01

    Full Text Available Food habits of 15 species of frugivorous bats were studied at La Selva Biological Station, Costa Rica. Eight hundred and fifty-four (854 fecal samples and 169 samples from fruit parts and seeds discarded by bats beneath feeding roosts were analyzed. During eight months of study, 47 fruit species consumed by bats were identified. Five plant genera (Cecropia, Ficus, Piper, Solanum, and Vismia constituted 85% of all plants found in fecal samples. Feeding niche breadth differed significantly among the six most common species of frugivorous bats (Artibeus jamaicensis, Carollia sowelli, C. castanea, C. perspicillata, Dermanura sp., and Glossophaga commissarisi. All species, except for Dermanura sp., showed a diet dominated by one or two plant species. This suggests a pattern of resource partitioning at a generic level, in which Carollia consumed mainly Piper, Artibeus consumed Ficus and Cecropia, and Glossophaga consumed Vismia. Cluster analysis revealed higher values of food niche overlap in congeneric species than among species of different genera. Results show that if food is a limiting factor, mechanisms other than trophic selection must reduce interspecific interference or competition for food in this frugivorous bat guild. Rev. Biol. Trop. 55 (1: 301-313. Epub 2007 March. 31.Estudiamos los hábitos alimentarios de 15 especies de murciélagos frugívoros en la Estación Biológica La Selva. Se analizó 854 muestras de heces y 169 muestras de restos de frutos y semillas en comederos. Durante ocho meses de estudio, se identificó 47 especies de frutos, que fueron consumidos por los murciélagos. Cinco géneros de plantas (Cecropia, Ficus, Piper, Solanum y Vismia constituyeron el 85% de los hallazgos en las muestras de heces y los comederos. La amplitud de nicho trófico difirió significativamente entre las seis especies de murciélagos frugívoros más frecuentemente capturados (Artibeus jamaicensis, Carollia sowelli, C. castanea, C. perspicillata

  9. A method for identification and analysis of non-overlapping myeloid immunophenotypes in humans.

    Directory of Open Access Journals (Sweden)

    Michael P Gustafson

    Full Text Available The development of flow cytometric biomarkers in human studies and clinical trials has been slowed by inconsistent sample processing, use of cell surface markers, and reporting of immunophenotypes. Additionally, the function(s of distinct cell types as biomarkers cannot be accurately defined without the proper identification of homogeneous populations. As such, we developed a method for the identification and analysis of human leukocyte populations by the use of eight 10-color flow cytometric protocols in combination with novel software analyses. This method utilizes un-manipulated biological sample preparation that allows for the direct quantitation of leukocytes and non-overlapping immunophenotypes. We specifically designed myeloid protocols that enable us to define distinct phenotypes that include mature monocytes, granulocytes, circulating dendritic cells, immature myeloid cells, and myeloid derived suppressor cells (MDSCs. We also identified CD123 as an additional distinguishing marker for the phenotypic characterization of immature LIN-CD33+HLA-DR- MDSCs. Our approach permits the comprehensive analysis of all peripheral blood leukocytes and yields data that is highly amenable for standardization across inter-laboratory comparisons for human studies.

  10. Dielectric properties of crystalline organic molecular films in the limit of zero overlap

    Energy Technology Data Exchange (ETDEWEB)

    D’Avino, Gabriele, E-mail: gabriele.davino@gmail.com [Laboratory for Chemistry of Novel Materials, University of Mons, Place du Parc 20, BE-7000 Mons, Belgium and Department of Physics, University of Liège, Allée du 6 Août 17, BE-4000 Liège (Belgium); Vanzo, Davide; Soos, Zoltán G., E-mail: soos@princeton.edu [Department of Chemistry, Princeton University, Princeton, New Jersey 08544 (United States)

    2016-01-21

    We present the calculation of the static dielectric susceptibility tensor and dipole field sums in thin molecular films in the well-defined limit of zero intermolecular overlap. Microelectrostatic and charge redistribution approaches are applied to study the evolution of dielectric properties from one to a few molecular layers in films of different conjugated molecules with organic electronics applications. Because of the conditional convergence of dipolar interactions, dipole fields depend on the shape of the sample and different values are found in the middle layer of a thick film and in the bulk. The shape dependence is eliminated when depolarization is taken into account, and the dielectric tensor of molecular films converges to the bulk limit within a few molecular layers. We quantify the magnitude of surface effects and interpret general trends among different systems in terms of molecular properties, such as shape, polarizability anisotropy, and supramolecular organization. A connection between atomistic models for molecular dielectrics and simpler theories for polarizable atomic lattices is also provided.

  11. Extraction of pure components from overlapped signals in gas chromatography-mass spectrometry (GC-MS

    Directory of Open Access Journals (Sweden)

    Likić Vladimir A

    2009-10-01

    Full Text Available Abstract Gas chromatography-mass spectrometry (GC-MS is a widely used analytical technique for the identification and quantification of trace chemicals in complex mixtures. When complex samples are analyzed by GC-MS it is common to observe co-elution of two or more components, resulting in an overlap of signal peaks observed in the total ion chromatogram. In such situations manual signal analysis is often the most reliable means for the extraction of pure component signals; however, a systematic manual analysis over a number of samples is both tedious and prone to error. In the past 30 years a number of computational approaches were proposed to assist in the process of the extraction of pure signals from co-eluting GC-MS components. This includes empirical methods, comparison with library spectra, eigenvalue analysis, regression and others. However, to date no approach has been recognized as best, nor accepted as standard. This situation hampers general GC-MS capabilities, and in particular has implications for the development of robust, high-throughput GC-MS analytical protocols required in metabolic profiling and biomarker discovery. Here we first discuss the nature of GC-MS data, and then review some of the approaches proposed for the extraction of pure signals from co-eluting components. We summarize and classify different approaches to this problem, and examine why so many approaches proposed in the past have failed to live up to their full promise. Finally, we give some thoughts on the future developments in this field, and suggest that the progress in general computing capabilities attained in the past two decades has opened new horizons for tackling this important problem.

  12. Structurally distinct nicotine immunogens elicit antibodies with non-overlapping specificities

    Science.gov (United States)

    Pravetoni, M; Keyler, DE; Pidaparthi, RR; Carroll, FI; Runyon, SP; Murtaugh, MP; Earley, CA; Pentel, PR

    2011-01-01

    Nicotine conjugate vaccine efficacy is limited by the concentration of nicotine-specific antibodies that can be reliably generated in serum. Previous studies suggest that the concurrent use of 2 structurally distinct nicotine immunogens in rats can generate additive antibody responses by stimulating distinct B cell populations. In the current study we investigated whether it is possible to identify a third immunologically distinct nicotine immunogen. The new 1′-SNic immunogen (2S)-N,N′-(disulfanediyldiethane-2,1-diyl)bis[4-(2-pyridin-3-ylpyrrolidin-1-yl)butanamide] conjugated to keyhole limpet hemocyanin (KLH) differed from the existing immunogens 3′-AmNic-rEPA and 6-CMUNic-BSA in linker position, linker composition, conjugation chemistry, and carrier protein. Vaccination of rats with 1′-SNic-KLH elicited high concentrations of high affinity nicotine-specific antibodies. The antibodies produced in response to 1′-SNic-KLH did not appreciably cross-react in ELISA with either 3′-AmNic-rEPA or 6-CMUNic-BSA or vice-versa, showing that the B cell populations activated by each of these nicotine immunogens were non-overlapping and distinct. Nicotine retention in serum was increased and nicotine distribution to brain substantially reduced in rats vaccinated with 1′-SNic-KLH compared to controls. Effects of 1′-SNic-KLH on nicotine distribution were comparable to those of 3′-AmNic-rEPA which has progressed to late stage clinical trials as an adjunct to smoking cessation. These data show that it is possible to design multiple immunogens from a small molecule such as nicotine which elicit independent immune responses. This approach could be applicable to other addiction vaccines or small molecule targets as well. PMID:22100986

  13. Isolating and Discriminating Overlapping Signatures in Cluttered Environments

    Science.gov (United States)

    2011-05-11

    TEMTADS are its vectorial property and its maneuverabil- ity in complex terrain whereas its disadvantages are its smaller field of view and the...approx- imation, the magnetic field of N targets located at r̄` (` = 1, . . . ,N) and with dipole moments m̄` is simply obtained as the algebraic sum of Eq...considerations in mind. 4.2.d.(1) MPV data The MPV is a vectorial multi-static EMI instrument which collects data as it is waved above the surface

  14. Primary sclerosing cholangitis, autoimmune hepatitis and overlap syndromes in inflammatory bowel disease

    Institute of Scientific and Technical Information of China (English)

    Rebecca Saich; Roger Chapman

    2008-01-01

    Primary sclerosing cholangitis (PSC) is a chronic progressive disorder of unknown aetiology characterised by chronic inflammation and stricture formation of the biliary tree. Symptoms include itch and lethargy and in advanced cases cholangitis and end-stage liver disease, however increasing numbers of asymptomatic individuals are being identified. The disease is rare in the general population but is strongly associated with inflammatory bowel disease (IBD) affecting up to 5% of patients with Ulcerative Colitis, with a slightly lower prevalence (up to 3.6%) in Crohns disease. The strength of this association means that the vast majority (> 90%) of patients with PSC also have IBD, although many may have only mild gastro-intestinal symptoms. Usually IBD presents before PSC, although vice-versa can occur and the onset of both conditions can be separated in some cases by many years. Mean age of diagnosis of PSC is in the fifth decade of life with a strong male predominance.Risk is increased in those with a family history of PSC, suggesting a genetic predisposition and the disease is almost exclusive to non-smokers. The ulcerative colitis associated with PSC is characteristically mild, runs a quiescent course, is associated with rectal sparing, more severe right sided disease, backwash ilieitis and has a high risk of pouchiUs post-colectomy. Most worrisome is the high risk of colorectal malignancy which necessitates routine colonoscopic surveillance. Cholangiocarcinoma is also a frequent complication of PSC with a 10%-15% lifetime risk of developing this condition. Treatment with high dose ursodeoxycholic acid offers some chemoprotective effects against colorectal malignancy and may decrease symptoms, biochemical and histological progression of liver disease. Small duct PSC patients characteristically have normal cholangiography, and liver biopsy is required for diagnosis, it appears to have a more favourable prognosis. Autoimmune Hepatitis (AIH) is also more prevalent

  15. What pulmonologists think about the asthma–COPD overlap syndrome

    Directory of Open Access Journals (Sweden)

    Miravitlles M

    2015-07-01

    de Hierro Majadahonda, Madrid, 18Department of Pneumology, Hospital Universitario Dr Peset, Valencia, 19Department of Pneumology, Hospital Universitario Lucus Augusti, Lugo, 20Department of Pneumology, Hospital Universitario y Politécnico La Fe, Valencia, 21Department of Pneumology, Hospital Clínico Universitario Virgen de la Arrinxaca, Murcia, 22Department of Pneumology, Hospital Comarcal de Inca, Inca, 23Pneumology Department, Hospital Arnau de Vilanova-Lliria, Valencia, 24Department of Respiratory Medicine, Hospital de la Santa Creu i Sant Pau, Institut d’Investigació Biomédica Sant Pau (IIB Sant Pau, Department of Medicine, Universitat Autònoma de Barcelona, Barcelona, Spain Background: Some patients with COPD may share characteristics of asthma; this is the so-called asthma–COPD overlap syndrome (ACOS. There are no universally accepted criteria for ACOS, and most treatments for asthma and COPD have not been adequately tested in this population. Materials and methods: We performed a survey among pulmonology specialists in asthma and COPD aimed at collecting their opinions about ACOS and their attitudes in regard to some case scenarios of ACOS patients. The participants answered a structured questionnaire and attended a face-to-face meeting with the Metaplan methodology to discuss different aspects of ACOS. Results: A total of 26 pulmonologists with a mean age of 49.7 years participated in the survey (13 specialists in asthma and 13 in COPD. Among these, 84.6% recognized the existence of ACOS and stated that a mean of 12.6% of their patients might have this syndrome. In addition, 80.8% agreed that the diagnostic criteria for ACOS are not yet well defined. The most frequently mentioned characteristics of ACOS were a history of asthma (88.5%, significant smoking exposure (73.1%, and postbronchodilator forced expiratory volume in 1 second/forced vital capacity <0.7 (69.2%. The most accepted diagnostic criteria were eosinophilia in sputum (80.8%, a very

  16. Femtosecond resolved diagnostics for electron beam and XUV seed temporal overlap at sFLASH

    Energy Technology Data Exchange (ETDEWEB)

    Tarkeshian, Roxana

    2012-02-15

    sFLASH is a seeded experiment at the Free-Electron Laser FLASH in Hamburg. It uses a 38 nm High-Harmonic-Generation (HHG) scheme to seed the FEL-process in a 10m long variable-gap undulator. The temporal overlap between the electron and HHG pulses is critical to the seeding process. The use of a 3{sup rd} harmonic accelerating module provides a high current electron beam with {proportional_to} (400 fs){sub FWHM} bunch duration. The duration of the HHG laser pulse is {<=} (30 fs){sub FWHM}. The desired overlap is achieved in two steps. Firstly, the HHG drive laser is brought to temporal overlap with the incoherent spontaneous radiation from an upstream undulator with picosecond resolution. The temporal overlap is periodically monitored using a streak camera installed in the linear accelerator tunnel. Next, the coherent radiation from an undulator is used to determine the exact overlap of the electron beam in a modulator-radiator set-up with sub-picosecond resolution. The physical and technical principles of the setup providing the temporal overlap are described. Results of the system are analyzed. An analytical approach and simulation results for the performance of the seeding experiment are presented. First attempts at demonstration of seeding are discussed. Strategies for optimizing overlap conditions are presented. (orig.)

  17. Research on Some Bus Transport Networks with Random Overlapping Clique Structure

    Institute of Scientific and Technical Information of China (English)

    YANG Xu-Hua; WANG Bo; WANG Wan-Liang; SUN You-Xian

    2008-01-01

    On the basis of investigating the statistical data of bus transport networks of three big cities in China, we propose that each bus route is a clique (maximal complete subgraph) and a bus transport network (BTN) consists of a lot of cliques, which intensively connect and overlap with each other. We study the network properties, which include the degree distribution, multiple edges' overlapping time distribution, distribution of the overlap size between any two overlapping cliques, distribution of the number of cliques that a node belongs to. Naturally, the cliques also constitute a network, with the overlapping nodes being their multiple links. We' also research its network properties such as degree distribution, clustering, average path length, and so on. We propose that a BTN has the properties of random clique increment and random overlapping clique, at the same time, a BTN is a small-world network with highly clique-clustered and highly clique-overlapped. Finally, we introduce a BTN evolution model, whose simulation results agree well with the statistical laws that emerge in real BTNs.

  18. The clinical overlap between functional dyspepsia and irritable bowel syndrome based on Rome III criteria

    Directory of Open Access Journals (Sweden)

    LIU SiChun

    2008-09-01

    Full Text Available Abstract Background Epidemiological studies suggest considerable overlap between functional dyspepsia (FD and irritable bowel syndrome (IBS. To date, no surveys have been performed to investigate the clinical overlap between these two disorders using Rome III criteria. Our aim was to investigate the prevalence and risk factors for the overlap of FD and IBS based on Rome III criteria in a large clinical sample. Methods Consecutive patients at the general gastroenterology outpatient clinic were requested to complete a self-report questionnaire. FD and IBS were defined by Rome III criteria. Results Questionnaires were returned by 3014 patients (52.8% female, 89% response rate. FD-IBS overlap was observed in 5.0% of the patients, while 15.2% and 10.9% of the patients were classified as FD alone and IBS alone, respectively. Compared with non-IBS patients, the odds ratio of having FD among IBS patients was 2.09 (95% CI: 1.68–2.59. Patients with FD-IBS overlap had higher severity scores for the postprandial fullness symptom (2.35 ± 1.49 vs. 1.72 ± 1.59, P Conclusion Clinical overlap of FD and IBS according to Rome III criteria is very common. One risk factor for FD-IBS overlap is the presence of postprandial fullness symptom. This study provides clues for future pathophysiological studies of FD and IBS.

  19. Same-strand overlapping genes in bacteria: compositional determinants of phase bias

    Directory of Open Access Journals (Sweden)

    Landan Giddy

    2008-08-01

    Full Text Available Abstract Background Same-strand overlapping genes may occur in frameshifts of one (phase 1 or two nucleotides (phase 2. In previous studies of bacterial genomes, long phase-1 overlaps were found to be more numerous than long phase-2 overlaps. This bias was explained by either genomic location or an unspecified selection advantage. Models that focused on the ability of the two genes to evolve independently did not predict this phase bias. Here, we propose that a purely compositional model explains the phase bias in a more parsimonious manner. Same-strand overlapping genes may arise through either a mutation at the termination codon of the upstream gene or a mutation at the initiation codon of the downstream gene. We hypothesized that given these two scenarios, the frequencies of initiation and termination codons in the two phases may determine the number for overlapping genes. Results We examined the frequencies of initiation- and termination-codons in the two phases, and found that termination codons do not significantly differ between the two phases, whereas initiation codons are more abundant in phase 1. We found that the primary factors explaining the phase inequality are the frequencies of amino acids whose codons may combine to form start codons in the two phases. We show that the frequencies of start codons in each of the two phases, and, hence, the potential for the creation of overlapping genes, are determined by a universal amino-acid frequency and species-specific codon usage, leading to a correlation between long phase-1 overlaps and genomic GC content. Conclusion Our model explains the phase bias in same-strand overlapping genes by compositional factors without invoking selection. Therefore, it can be used as a null model of neutral evolution to test selection hypotheses concerning the evolution of overlapping genes. Reviewers This article was reviewed by Bill Martin, Itai Yanai, and Mikhail Gelfand.

  20. Global transport processes and interactions with trace constituents. Annual progress report, 1 July 1976--30 September 1977. [Sea surface temperatures of Atlantic and Pacific Oceans in relation to air temperature changes; effects of fossil fuel CO/sub 2/ on air temperature

    Energy Technology Data Exchange (ETDEWEB)

    Newell, R. E.

    1977-06-15

    Technical progress made in the period 1 July 1976 to 30 September 1977 is summarized. A detailed analysis of monthly mean sea surface temperature has been made for the Pacific and Atlantic down to 30/sup 0/S and is in progress for the Indian Ocean. It has been found that oceanic temperature changes precede tropical air temperature changes by about six months, opening the prospect of predicting tropical mean temperature. It has also been found that fossil fuel CO/sub 2/ changes in the atmosphere are related to equatorial Pacific sea surface temperature in the sense that colder water is followed by smaller rates of increase in atmospheric CO/sub 2/. It is suggested that the physical reason for the observed relationship is that cold water, produced by upwelling, is accompanied by more nutrients which encourage photosynthesis in the surface layers and lead to a greater take-up of atmospheric CO/sub 2/.