Sedimentation of phytoplankton during a diatom bloom : Rates and mechanisms

DEFF Research Database (Denmark)

Kiørboe, Thomas; Hansen, J.L.S.; Alldredge, A.L.

1996-01-01

Phytoplankton blooms are uncoupled from grazing and are normally terminated by sedimentation. There are several potential mechanisms by which phytoplankton cells may settle out of the photic zone: sinking of individual cells or chains, coagulation of cells into aggregates with high settling...... velocities, settling of cells attached to marine snow aggregates formed from discarded larvacean houses or pteropod feeding webs, and packaging of cells into rapidly falling zooplankton fecal pellets. We quantified the relative significance of these different mechanisms during a diatom bloom in a temperate...... to marine snow aggregates formed from discarded larvacean houses, whereas settling of unaggregated cells was insignificant. Formation rates of phytoplankton aggregates by physical coagulation was very low, and losses by this mechanism were much less than 0.07 d(-1); phytoplankton aggregates were neither...

Particulate Trace Element Cycling in a Diatom Bloom at Station ALOHA

Science.gov (United States)

Weisend, R.; Morton, P. L.; Landing, W. M.; Fitzsimmons, J. N.; Hayes, C. T.; Boyle, E. A.

2014-12-01

Phytoplankton in oligotrophic marine deserts depend on remote sources to supply trace nutrients. To examine these sources, marine particulate matter samples from the central North Pacific (Station ALOHA) were collected during the July-August 2012 HOE-DYLAN cruises and analyzed for a suite of trace (e.g., Fe, Mn) and major (e.g. Al, P) elements. Daily surface SPM samples were examined for evidence of atmospheric deposition and biological uptake, while five vertical profiles were examined for evidence of surface vertical export and subsurface horizontal transport from nearby sources (e.g., margin sediments, hydrothermal plumes). Maxima in surface particulate P (a biological tracer) corresponded with a diatom bloom, and surprisingly also coincided with maxima in particulate Al (typically a tracer for lithogenic inputs). The surface particulate Al distributions likely result from the adsorption of dissolved Al onto diatom silica frustules, not from atmospheric dust deposition. In addition, a subsurface maximum in particulate Al and P was observed four days later at 75m, possibly resulting from vertical export of the surface diatom bloom. The distributions of other bioactive trace elements (e.g. Cd, Co, Cu) will be presented in the context of the diatom bloom and other biological, chemical and physical features. A second, complementary poster is also being presented which examines the cycling of trace elements in lithogenic particles (Morton et al., "Trace Element Cycling in Lithogenic Particles at Station ALOHA").

Autofluorescence imaging system to discriminate and quantify the distribution of benthic cyanobacteria and diatoms

NARCIS (Netherlands)

Carreira, C.; Staal, M.; Middelboe, M.; Brussaard, C.P.D.

2015-01-01

Observation of benthic photoautotrophs on sediment surfaces shows a single algal layer without distinction between photosynthetic groups. Until now it has not been possible to distinguish between benthic photosynthetic microorganisms, i.e. cyanobacteria and diatoms, at μm to mm scales using a single

Effect of surface parameter of interband surface mode frequencies of finite diatomic chain

International Nuclear Information System (INIS)

Puszkarski, H.

1982-07-01

The surface modes of a finite diatomic chain of alternating atoms (M 1 not= M 2 ) are investigated. The surface force constants are assumed to differ from the bulk ones, with the resulting surface parameter a-tilde identical on both ends of the chain. Criteria, governing the existence of interband surface (IBS) modes with frequencies lying in the forbidden gap between acoustical and optical bulk bands for natural (a = 1) as well as non-natural (a not= 1) surface defect, are analysed by the difference equation method. It is found that the IBS modes localize, depending on the value of the surface parameter a, either at the surface of lighter atoms (if a-tilde is positive), or at that of heavier atoms (if a-tilde is negative). Two, one of no IBS modes are found to exist in the chain depending on the relation between the mass ratio and surface parameter - quantities on which the surface localization increment t-tilde depends. If two modes are present (one acoustical and the other optical), their frequencies are disposed symmetrically with respect to the middle of the forbidden gap, provided the surface defect is natural, or asymmetrically - if it is other than natural. If the localization of the IBS mode exceeds a well defined critical value tsub(c), the mode frequency becomes complex, indicating that the mode undergoes a damping. A comparison of the present results and those obtained by Wallis for the diatomic chain with natural surface defect is also given. (author)

Paleoceanographic history of the Guaymas Basin, Gulf of California, during the past 15,000 years based on diatoms, silicoflagellates, and biogenic sediments

Science.gov (United States)

Barron, J.A.; Bukry, D.; Dean, W.E.

2005-01-01

High-resolution records of calcium carbonate, biogenic opal, diatoms, and silicoflagellates from western Guaymas Basin gravity core GGC55 and piston core JPC56 and eastern Guaymas Basin DSDP Site 480 reveal a complex paleoceanographic history of the central Gulf of California during the past 15,000 years. Prior to ??? 6.2 ka, the eastern and western Guaymas Basin proxy records were remarkably similar. After conditions similar to those of today during the B??lling-Allerod, the Younger Dryas (YD) saw a major drop in diatom production, coincident with increased calcium carbonate and tropical microfossils suggestive of El Nin??o-like conditions. Biosiliceous productivity began increasing during the latter part of the YD, but it was only during the earliest Holocene (11.6 to 11.0 ka) that conditions similar to those of the B??lling-Allerod returned to the central Gulf. Between around 11.0 and 6.2 ka, tropical diatoms and silicoflagellates were virtually absent from the central Gulf, as relatively cooler and fresher surface waters resembling those of the modern northern Gulf were present in the central Gulf. Beginning at about 6.2 ka, tropical diatoms and silicoflagellates began increasing in the central Gulf, and coccoliths returned to western Gulf sediments. The onset of modern-day monsoon conditions in the American Southwest required the presence of warm SSTs in the northern Gulf, which probably did not occur until after about 5.4 ka, when tropical diatoms and silicoflagellates became relatively common in the central Gulf. Modern east-west contrasts, which arise from late winter-early spring coastal upwelling on the mainland side and lower diatom productivity on the western side of the Gulf, commenced between 6.2 and 5.4 ka, possibly due to a shift in the direction of late winter-early spring winds more towards the southeast, or down the axis of the Gulf. This proposed wind shift might have ultimately been due to a late Holocene strengthening of ENSO-like conditions

A caveat regarding diatom-inferred nitrogen concentrations in oligotrophic lakes

Science.gov (United States)

Arnett, Heather A.; Saros, Jasmine E.; Mast, M. Alisa

2012-01-01

Atmospheric deposition of reactive nitrogen (Nr) has enriched oligotrophic lakes with nitrogen (N) in many regions of the world and elicited dramatic changes in diatom community structure. The lakewater concentrations of nitrate that cause these community changes remain unclear, raising interest in the development of diatom-based transfer functions to infer nitrate. We developed a diatom calibration set using surface sediment samples from 46 high-elevation lakes across the Rocky Mountains of the western US, a region spanning an N deposition gradient from very low to moderate levels (phosphorus, and hypolimnetic water temperature were related to diatom distributions. A transfer function was developed for nitrate and applied to a sedimentary diatom profile from Heart Lake in the central Rockies. The model coefficient of determination (bootstrapping validation) of 0.61 suggested potential for diatom-inferred reconstructions of lakewater nitrate concentrations over time, but a comparison of observed versus diatom-inferred nitrate values revealed the poor performance of this model at low nitrate concentrations. Resource physiology experiments revealed that nitrogen requirements of two key taxa were opposite to nitrate optima defined in the transfer function. Our data set reveals two underlying ecological constraints that impede the development of nitrate transfer functions in oligotrophic lakes: (1) even in lakes with nitrate concentrations below quantification (<1 μg L−1), diatom assemblages were already dominated by species indicative of moderate N enrichment; (2) N-limited oligotrophic lakes switch to P limitation after receiving only modest inputs of reactive N, shifting the controls on diatom species changes along the length of the nitrate gradient. These constraints suggest that quantitative inferences of nitrate from diatom assemblages will likely require experimental approaches.

C5 glycolipids of heterocystous cyanobacteria track symbiont abundance in the diatom Hemiaulus hauckii across the tropical North Atlantic

Science.gov (United States)

Bale, Nicole J.; Villareal, Tracy A.; Hopmans, Ellen C.; Brussaard, Corina P. D.; Besseling, Marc; Dorhout, Denise; Sinninghe Damsté, Jaap S.; Schouten, Stefan

2018-03-01

Diatom-diazotroph associations (DDAs) include marine heterocystous cyanobacteria found as exosymbionts and endosymbionts in multiple diatom species. Heterocysts are the site of N2 fixation and have thickened cell walls containing unique heterocyst glycolipids which maintain a low oxygen environment within the heterocyst. The endosymbiotic cyanobacterium Richelia intracellularis found in species of the diatom genus Hemiaulus and Rhizosolenia makes heterocyst glycolipids (HGs) which are composed of C30 and C32 diols and triols with pentose (C5) moieties that are distinct from limnetic cyanobacterial HGs with predominantly hexose (C6) moieties. Here we applied a method for analysis of intact polar lipids to the study of HGs in suspended particulate matter (SPM) and surface sediment from across the tropical North Atlantic. The study focused on the Amazon plume region, where DDAs are documented to form extensive surface blooms, in order to examine the utility of C5 HGs as markers for DDAs as well as their transportation to underlying sediments. C30 and C32 triols with C5 pentose moieties were detected in both marine SPM and surface sediments. We found a significant correlation between the water column concentration of these long-chain C5 HGs and DDA symbiont counts. In particular, the concentrations of both the C5 HGs (1-(O-ribose)-3,27,29-triacontanetriol (C5 HG30 triol) and 1-(O-ribose)-3,29,31-dotriacontanetriol (C5 HG32 triol)) in SPM exhibited a significant correlation with the number of Hemiaulus hauckii symbionts. This result strengthens the idea that long-chain C5 HGs can be applied as biomarkers for marine endosymbiotic heterocystous cyanobacteria. The presence of the same C5 HGs in surface sediment provides evidence that they are effectively transported to the sediment and hence have potential as biomarkers for studies of the contribution of DDAs to the paleo-marine N cycle.

A synthesis of post-glacial diatom records from Lake Baikal

Science.gov (United States)

Bradbury, J. Platt; Bezrukova, E.; Chernyaeva, G.; Colman, S.M.; Khursevich, G.; King, J.W.; Likoshway, Ye. V.

1994-01-01

The biostratigraphy of fossil diatoms contributes important chronologic, paleolimnologic, and paleoclimatic information from Lake Baikal in southeastern Siberia. Diatoms are the dominant and best preserved microfossils in the sediments, and distinctive assemblages and species provide inter-core correlations throughout the basin at millennial to centennial scales, in both high and low sedimentation-rate environments. Distributions of unique species, once dated by radiocarbon, allow diatoms to be used as dating tools for the Holocene history of the lake.Diatom, pollen, and organic geochemical records from site 305, at the foot of the Selenga Delta, provide a history of paleolimnologic and paleoclimatic changes from the late glacial (15 ka) through the Holocene. Before 14 ka diatoms were very rare, probably because excessive turbidity from glacial meltwater entering the lake impeded productivity. Between 14 and 12 ka, lake productivity increased, perhaps as strong winds promoted deep mixing and nutrient regeneration. Pollen evidence suggests a cold shrub — steppe landscape dominated the central Baikal depression at this time. As summer insolation increased, conifers replaced steppe taxa, but diatom productivity declined between 11 and 9 ka perhaps as a result of increased summer turbidity resulting from violent storm runoff entering the lake via short, steep drainages. After 8 ka, drier, but more continental climates prevailed, and the modern diatom flora of Lake Baikal came to prominence.On Academician Ridge, a site of slow sedimentation rates, Holocene diatom assemblages at the top of 10-m cores reappear at deeper levels suggesting that such cores record at least two previous interglacial (or interstadial?) periods. Nevertheless, distinctive species that developed prior to the last glacial period indicate that the dynamics of nutrient cycling in Baikal and the responsible regional climatic environments were not entirely analogous to Holocene conditions. During

Diatom paleoecology Pass Key core 37, Everglades National Park, Florida Bay

Science.gov (United States)

Pyle, Laura; Cooper, S.R.; Huvane, J.K.

1998-01-01

During the 20th century, there have been large-scale anthropogenic modifications to the South Florida ecosystem. The effects of these changes on Florida Bay and its biological communities are currently of political and scientific interest. This study is part of a larger effort to reconstruct the history of environmental changes in the bay, using paleoecological techniques. We are using diatom indicators preserved in Florida Bay sediments to infer long-term water quality, productivity, nutrient, and salinity changes. We are also obtaining information concerning the natural variability of the ecosystem. Diatoms are microscopic algae, the remains of which are generally well preserved in sediments, and their distributions are closely linked to water quality. Diatoms were extracted from a 70-cm sediment core collected from the Pass Key mudbank of Florida Bay by the U.S. Geological Survey. Between 300-500 diatom valves from each of 15 core samples were identified and counted. Estimates of absolute abundance, species richness, Shannon-Wiener diversity, and centric:pennate ratios were calculated for each sample that was counted. Information on the ecology of the diatom species is presented, and changes in diatom community composition are evaluated. Samples contained an average of four million diatom valves per gram of sediment. Major changes in the diatom community are evident down core. These include increases in the percent abundance of marine diatoms in the time period represented by the core, probably the result of increasing salinity at Pass Key. Benthic diatoms become less abundant in the top half of the core. This may be related to a number of factors including the die-off of sea grass beds or increased turbidity of the water column. Once the chronology of the Pass Key core 37 is established, these down-core changes can be related to historical events and compared with other indicators in the sedimentary record that are currently being investigated by U.S Geological

Diatom stratigraphy and long-term dissolved silica concentrations in the Baltic Sea

Science.gov (United States)

Olli, Kalle; Clarke, Annemarie; Danielsson, Åsa; Aigars, Juris; Conley, Daniel J.; Tamminen, Timo

2008-10-01

In many parts of the world coastal waters with anthropogenic eutrophication have experienced a gradual depletion of dissolved silica (DSi) stocks. This could put pressure on spring bloom diatom populations, e.g. by limiting the intensity of blooms or by causing shifts in species composition. In addition, eutrophication driven enhanced diatom growth is responsible for the redistribution of DSi from the water phase to the sediments, and changes in the growth conditions may be reflected in the sediment diatom stratigraphy. To test for changes in diatom communities we have analyzed four sediment cores from the Baltic Sea covering approximately the last 100 years. The sediment cores originate from the western Gulf of Finland, the Kattegat, the Baltic Proper and the Gulf of Riga. Three out of the four cores reveal only minor changes in composition of diatom assemblages, while the Gulf of Riga core contains major changes, occurring after the second World War. This area is set apart from the other Baltic Sea basins by a high frequency of low after spring bloom DSi concentrations (< 2 µmol L - 1 ) during a relatively well defined time period from 1991-1998. In 1991 to 1993 a rapid decline of DSi spring concentrations and winter stocks (down to 5 µmol L - 1 ) in the Gulf was preceded by exceptionally intense diatom spring blooms dominated by the heavily silicified species Thalassiosira baltica (1991-1992; up to 5.5 mg ww L - 1 ). T. baltica has been the principal spring bloom diatom in the Gulf of Riga since records began in 1975. DSi consumption and biomass yield experiments with cultured T. baltica suggest that intense blooms can potentially exhaust the DSi stock of the water column and exceed the annual Si dissolution in the Gulf of Riga. The phytoplankton time series reveals another exceptional T. baltica bloom period in 1981-1983 (up to 8 mg L - 1 ), which, however, took place before the regular DSi measurements. These periods may be reflected in the conspicuous

An unusual early Holocene diatom event north of the Getz Ice Shelf (Amundsen Sea): Implications for West Antarctic Ice Sheet development

Science.gov (United States)

Esper, O.; Gersonde, R.; Hillenbrand, C.; Kuhn, G.; Smith, J.

2011-12-01

Modern global change affects not only the polar north but also, and to increasing extent, the southern high latitudes, especially the Antarctic regions covered by the West Antarctic Ice Sheet (WAIS). Consequently, knowledge of the mechanisms controlling past WAIS dynamics and WAIS behaviour at the last deglaciation is critical to predict its development in a future warming world. Geological and palaeobiological information from major drainage areas of the WAIS, like the Amundsen Sea Embayment, shed light on the history of the WAIS glaciers. Sediment records obtained from a deep inner shelf basin north of Getz Ice Shelf document a deglacial warming in three phases. Above a glacial diamicton and a sediment package barren of microfossils that document sediment deposition by grounded ice and below an ice shelf or perennial sea ice cover (possibly fast ice), respectively, a sediment section with diatom assemblages dominated by sea ice taxa indicates ice shelf retreat and seasonal ice-free conditions. This conclusion is supported by diatom-based summer temperature reconstructions. The early retreat was followed by a phase, when exceptional diatom ooze was deposited around 12,500 cal. years B.P. [1]. Microscopical inspection of this ooze revealed excellent preservation of diatom frustules of the species Corethron pennatum together with vegetative Chaetoceros, thus an assemblage usually not preserved in the sedimentary record. Sediments succeeding this section contain diatom assemblages indicating rather constant Holocene cold water conditions with seasonal sea ice. The deposition of the diatom ooze can be related to changes in hydrographic conditions including strong advection of nutrients. However, sediment focussing in the partly steep inner shelf basins cannot be excluded as a factor enhancing the thickness of the ooze deposits. It is not only the presence of the diatom ooze but also the exceptional preservation and the species composition of the diatom assemblage

Comparison between sedimentary and living diatoms in Lago Maggiore (N. Italy: implications of using transfer functions

Directory of Open Access Journals (Sweden)

Simona MUSAZZI

2001-02-01

Full Text Available We compared the recent history of living planktonic diatom assemblages in Lago Maggiore with the remains found in the topmost section of 14 sediment cores taken from the lake. Sediment samples showed a marked domination of planktonic taxa, but a significant proportion of benthic taxa was found in cores collected close to river mouths. Between-core variability in diatom assemblage and in diatom-inferred total phosphorus concentration was also estimated. The implications of our results for calibration data sets relating environmental variables to diatom assemblages are also discussed.

Iron Availability Influences Silicon Isotope Fractionation in Two Southern Ocean Diatoms (Proboscia inermis and Eucampia antarctica and a Coastal Diatom (Thalassiosira pseudonana

Directory of Open Access Journals (Sweden)

Scott Meyerink

2017-07-01

Full Text Available The fractionation of silicon (Si isotopes was measured in two Southern Ocean diatoms (Proboscia inermis and Eucampia Antarctica and a coastal diatom (Thalassiosira pseudonana that were grown under varying iron (Fe concentrations. Varying Fe concentrations had no effect on the Si isotope enrichment factor (ε in T. pseudonana, whilst E. Antarctica and P. inermis exhibited significant variations in the value of ε between Fe-replete and Fe-limited conditions. Mean ε values in P. inermis and E. Antarctica decreased from (± 1SD −1.11 ± 0.15‰ and −1.42 ± 0.41 ‰ (respectively under Fe-replete conditions, to −1.38 ± 0.27 ‰ and −1.57 ± 0.5 ‰ (respectively under Fe-limiting conditions. These variations likely arise from adaptations in diatoms arising from the nutrient status of their environment. T. pseudonana is a coastal clone typically accustomed to low Si but high Fe conditions whereas E. Antarctica and P. inermis are typically accustomed to High Si, High nitrate low Fe conditions. Growth induced variations in silicic acid (Si(OH4 uptake arising from Fe-limitation is the likely mechanism leading to Si-isotope variability in E. Antarctica and P. inermis. The multiplicative effects of species diversity and resource limitation (e.g., Fe on Si-isotope fractionation in diatoms can potentially alter the Si-isotope composition of diatom opal in diatamaceous sediments and sea surface Si(OH4. This work highlights the need for further in vitro studies into intracellular mechanisms involved in Si(OH4 uptake, and the associated pathways for Si-isotope fractionation in diatoms.

Shift in the species composition of the diatom community in the eutrophic Mauritanian coastal upwelling: Results from a multi-year sediment trap experiment (2003-2010)

Science.gov (United States)

Romero, Oscar E.; Fischer, Gerhard

2017-12-01

A multiannual, continuous sediment trap experiment was conducted at the mooring site CBeu (Cape Blanc eutrophic, ca. 20 °N, ca. 18 °W; trap depth = 1256-1296 m) in the high-productive Mauritanian coastal upwelling. Here we present fluxes and the species-specific composition of the diatom assemblage, and fluxes of biogenic silica (BSi, opal) and total organic carbon (TOC) for the time interval June 2003-Feb 2010. Flux ranges of studied parameters are (i) total diatoms = 1.2 ∗ 108-4.7 ∗ 104 valves m-2 d-1 (average = 5.9 × 106 valves ± 1.4 × 107); (ii) BSi = 296-0.5 mg m-2 d-1 (average = 41.1 ± 53.5 mg m-2 d-1), and (iii) TOC = 97-1 mg m-2 d-1 (average = 20.5 ± 17.8 mg m-2 d-1). Throughout the experiment, the overall good match of total diatom, BSi and TOC fluxes is reasonably consistent and reflects well the temporal occurrence of the main Mauritanian upwelling season. Spring and summer are the most favorable seasons for diatom production and sedimentation: out of the recorded 14 diatom maxima of different magnitude, six occurred in spring and four in summer. The diverse diatom community at site CBeu is composed of four main assemblages: benthic, coastal upwelling, coastal planktonic and open-ocean diatoms, reflecting different productivity conditions and water masses. A striking feature of the temporal variability of the diatom populations is the persistent pattern of seasonal groups' contribution: benthic and coastal upwelling taxa dominated during the main upwelling season in spring, while open-ocean diatoms were more abundant in fall and winter, when the upper water column becomes stratified, upwelling relaxes and productivity decreases. The relative abundance of benthic diatoms strongly increased after 2006, yet their spring-summer contribution remained high until the end of the trap experiment. The occurrence of large populations of benthic diatoms at the hemipelagic CBeu site is interpreted to indicate transport from shallow waters via nepheloid

Diatom Stratigraphy of FA-1 Core, Qarun Lake, Records of Holocene Environmental and Climatic Change in Faiyum Oasis, Egypt

Directory of Open Access Journals (Sweden)

Zalat Abdelfattah A.

2017-06-01

Full Text Available This study evaluates changes in the environmental and climatic conditions in the Faiyum Oasis during the Holocene based on diatom analyses of the sediment FA-1 core from the southern seashore of the Qarun Lake. The studied FA-1 core was 26 m long and covered the time span ca. 9.000 cal. yrs BP. Diatom taxa were abundant and moderately to well-preserved throughout the core sediments. Planktonic taxa were most abundant than the benthic and epiphytic forms, which were very rare and sparsely distributed. The most dominant planktonic genera were Aulacoseira and Stephanodiscus followed by frequently distribution of Cyclostephanos and Cyclotella species. The stratigraphic distribution patterns of the recorded diatoms through the Holocene sediments explained five ecological diatom groups. These groups represent distinctive environmental conditions, which were mainly related to climatic changes through the early and middle Holocene, in addition to anthropogenic activity during the late Holocene. Comparison of diatom assemblages in the studied sediment core suggests that considerable changes occurred in water level as well as salinity. There were several high stands of the freshwater lake level during humid, warmer-wet climatic phases marked by dominance of planktonic, oligohalobous and alkaliphilous diatoms alternated with lowering of the lake level and slight increases in salinity and alkalinity during warm arid conditions evident by prevalence of brackish water diatoms.

Enhancing the efficiency of dye-sensitized solar cells by adding diatom frustules into TiO{sub 2} working electrodes

Energy Technology Data Exchange (ETDEWEB)

Huang, Der-Ray, E-mail: derray@mail.ndhu.edu.tw; Jiang, Yan-Jang; Liou, Run-Lin; Chen, Chih-Han; Chen, Yi-An; Tsai, Chih-Hung, E-mail: cht@mail.ndhu.edu.tw

2015-08-30

Graphical abstract: - Highlights: • High-speed centrifugal processing and sedimentation-rate separation techniques were used to obtain diatom frustules. • Diatom frustules were added into TiO{sub 2} paste to prepare a TiO{sub 2}-diatom paste mixture. • TiO{sub 2}-diatom paste mixture was used to fabricate working electrodes for DSSCs. • TiO{sub 2}-diatom electrodes improved the light-trapping effect and DSSC efficiency. • DSSCs with using the TiO{sub 2}-diatom electrode exhibited a 38% increase in efficiency. - Abstract: In this study, diatom frustules were added into TiO{sub 2} paste to prepare a TiO{sub 2}-diatom paste mixture. Spin-coating and high-temperature sintering techniques were then used to fabricate working electrodes for dye-sensitized solar cells (DSSCs). Mixing the diatom frustules with the TiO{sub 2} paste improved the light-trapping effect and scattering properties of the incident light in the TiO{sub 2}-diatom working electrodes, thereby enhancing the power conversion efficiency of the DSSCs. In this study, a high-speed centrifugal processing technology and sedimentation-rate separation techniques were first used to obtain the diatom frustules, which were then mixed with the TiO{sub 2} paste at a weight ratio of 1:50; a spin-coating technique was then used to fabricate the working electrodes. Finally, a high-temperature sintering process (500 °C) was performed. In this study, optical microscopy, scanning electron microscopy, atomic force microscopy, X-ray photoelectron spectroscopy, Raman spectroscopy, and a surface profiler and spectrometer were used to analyze the characteristics of the working electrodes. The TiO{sub 2} or TiO{sub 2}-diatom working electrodes were prepared under various spin-coating conditions for fabricating and analyzing the characteristics of the DSSCs. The results indicated that under identical conditions, the power conversion efficiency of the DSSCs was 3.81% when coated three times with a conventional TiO{sub 2

Pliocene diatoms from the Bryce Canyon Area, Utah

Digital Repository Service at National Institute of Oceanography (India)

Setty, M.G.A.P.

habitat. The fragmentary condition of these indicated agitation during sedimentation. The ratio between the planktonic and benthonic diatoms indicated near-shore deposition. The two extinct species (?), @iSurirella craticula@@ (= @iStictodesmis craticula...

[Research advances in heavy metals pollution ecology of diatom].

Science.gov (United States)

Ding, Teng-Da; Ni, Wan-Min; Zhang, Jian-Ying

2012-03-01

Diatom, due to its high sensitivity to environmental change, is one of the bio-indicators of aquatic ecosystem health, and some typical diatom species have been applied to indicate the heavy metals pollution of water body. With the focus on the surface water heavy metals pollution, this paper reviewed the research advances in the toxic effect of heavy metals pollution on diatom, biosorption and bioaccumulation of heavy metals by diatom, ecological adaptation mechanisms of diatom to heavy metals pollution, and roles of diatom as bio-indicator and in ecological restoration of heavy metals pollution. The growth tendency of diatom and the morphological change of frustule under heavy metals pollution as well as the differences in heavy metals biosorption and bioaccumulation by diatom, the ecological adaptation mechanisms of diatom on heavy metals surface complexation and ion exchange, and the roles of diatom as bio-indicator and in ecological restoration of heavy metals polluted water body were also discussed. This review could provide scientific evidences for the prevention of aquatic ecosystems heavy metals pollution and related early warning techniques.

The contribution of bank and surface sediments to fluvial sediment ...

African Journals Online (AJOL)

The contribution of bank and surface sediments to fluvial sediment transport of the Pra River. ... the relative contribution of surface and bank sediments to the fluvial sediment transport. ... EMAIL FREE FULL TEXT EMAIL FREE FULL TEXT

Algal stabilisation of estuarine sediments

International Nuclear Information System (INIS)

1992-01-01

The presence of benthic microalgae can increase the stability of intertidal sediments and influence sediment fluxes within an estuarine environment. Therefore the relative importance of algal stabilisation needs to be understood to help predict the effects of a tidal barrage. The biogenic stabilisation of intertidal estuarine sediments by epipelic diatom films and the macrophyte Vaucheria was studied at three sites on the Severn Estuary. The cohesive strength meter (CSM) was developed to measure surface critical shear stress with varied algal density. A number of techniques have been used to determine the general in situ erodibility of cohesive estuarine sediments. The measurements of sediment shear strength and critical erosion velocity were investigated. Field experiments were undertaken to investigate the effect of algae on binding sediments, and a predictive method for the assessment of sediment stabilisation by algal binding was developed. (author)

Spatial and Temporal Variations in Diatoms from la Chaine des Lacs Urban Watershed, Nord-Pas France, in Relation to Water Quality

Science.gov (United States)

Noble, P. J.; Van de Vijver, B.; Verleyen, E.; Prygiel, J.; Ivanovsky, A.; Lesven, L.; Billon, G.

2016-12-01

Diatom analysis was conducted on lake sediments in la Chaîne des Lacs (CDL), a shallow eutrophic urban park and storm control system in Villeneuve d'Ascq, France, to address both the present day water quality, and the evolution of this urban system over its 40 year history. The main lake, Lac du Héron (LDH), received recent attention because of water quality problems, including eutrophication, harmful algal blooms, and invasion by the macrophyte Elodea in 2012. A total of 17 sites were collected in CDL, 11 of which were in LDH, to document spatial variability, and a 26cm long core addresses historical changes. The bulk of the diatom assemblage in LDH can be classified as both eutrophic and moderately metal tolerant, using modern national diatom indices developed and used by the French regional water agencies. Surface sediment samples within LDH show large spatial variations in %Cocconeis placentula whose habitat is epiphytic growth on Elodea. Other variation is reflected in the phytoplankton composition both spatially, and interannually. Aulacoseira muzzanensis and Cyclostephanos dubius showed greater abundance in the open water habitats in LDH, whereas sites in CDL outside of LDH had greater Cyclotella meneghiniana. Temporally, Stephanodicsus (largely S. hantzschii), the dominant diatom in early spring, were present in greater abundances in the 2016 surface sediment samples than in any of the 2015 samples. One possible explanation is that the 2016 samples, taken March 30th, preferentially preserved the early spring Stephanodiscus bloom, in contrast to the 2015 samples, which were taken in January. The sediment core provides an historical record, where the uppermost 4cm plot with the bulk of the LDH surface samples and contain abundant Cocconeis, 4 -14cm is phytoplankton-rich, largely Cyclostephanos dubius and Aulacoseira muzzanensis, and represents a less weed-choked environment prior to the 2012 Elodea invasion. The base of the core is dominated by Amphora and

Late Pliocene diatoms in a diatomite from Prydz Bay, East Antarctica

Science.gov (United States)

Mahood, A.D.; Barron, J.A.

1996-01-01

Very well-preserved Pliocene diatoms from a diatomite unit interbedded within glacial sediments at Ocean Drilling Program Site 742 in Prydz Bay, Antarctica are documented and illustrated. The presence of Thalassiosira kolbei, T. torokina, Actinocyclus actinochilus, A. karstenii and the absence of Nitzschia interfrigidaria. T. insigna and T. vulnifica in Sample 119-742A-15R-4, 44-46cm constrain its age to ca. 2.2-1.8 Ma (late Pliocene). Diatoms associated with sea ice constitute 35% of the Pliocene diatom assemblage, compared with 71% of the modern sediment assemblage at the site, suggesting that sea ice was present during the late Pliocene period of deposition of the sample, although it probably was not the significant feature it is today. Thalassiosira ellitipora (Donahue) Fenner is described and illustrated in detail and is validly published. An expanded description and numerous illustrations are also presented for T. torokina Brady.

Sampler collection gadget for epilithic diatoms.

Science.gov (United States)

Salomoni, S E; Torgan, L C; Rocha, O

2007-11-01

This work present a new gadget for sampling epilithic diatoms from both lentic and lotic enviroments. The sampler consists of a polystyrene cylinder, left to float on the surface of the water, to which stone substrates are attached. This epilithic diatom sampler (EDS) can be used to detect spatial and temporal richness and density variation in the study of the diatom community, as well as in water quality monitoring.

Applying machine learning to global surface ocean and seabed data to reveal the controls on the distribution of deep-sea sediments

Science.gov (United States)

Dutkiewicz, Adriana; Müller, Dietmar; O'Callaghan, Simon

2017-04-01

World's ocean basins contain a rich and nearly continuous record of environmental fluctuations preserved as different types of deep-sea sediments. The sediments represent the largest carbon sink on Earth and its largest geological deposit. Knowing the controls on the distribution of these sediments is essential for understanding the history of ocean-climate dynamics, including changes in sea-level and ocean circulation, as well as biological perturbations. Indeed, the bulk of deep-sea sediments comprises the remains of planktonic organisms that originate in the photic zone of the global ocean implying a strong connection between the seafloor and the sea surface. Machine-learning techniques are perfectly suited to unravelling these controls as they are able to handle large sets of spatial data and they often outperform traditional spatial analysis approaches. Using a support vector machine algorithm we recently created the first digital map of seafloor lithologies (Dutkiewicz et al., 2015) based on 14,400 surface samples. This map reveals significant deviations in distribution of deep-sea lithologies from hitherto hand-drawn maps based on far fewer data points. It also allows us to explore quantitatively, for the first time, the relationship between oceanographic parameters at the sea surface and lithologies on the seafloor. We subsequently coupled this global point sample dataset of 14,400 seafloor lithologies to bathymetry and oceanographic grids (sea-surface temperature, salinity, dissolved oxygen and dissolved inorganic nutrients) and applied a probabilistic Gaussian process classifier in an exhaustive combinatorial fashion (Dutkiewicz et al., 2016). We focused on five major lithologies (calcareous sediment, diatom ooze, radiolarian ooze, clay and lithogenous sediment) and used a computationally intensive five-fold cross-validation, withholding 20% of the data at each iteration, to assess the predictive performance of the machine learning method. We find that

Effect of ageing on survival of benthic diatom propagules

Digital Repository Service at National Institute of Oceanography (India)

Anil, A.C.; Mitbavkar, S.; De; Hegde, S.; De; Meher, S.S.; Banerjee, D.

unfavorable for vegetative growth, many diatoms form resting stages to survive cell degradation or death (Anderson, 1975; Malone, 1980; Hargraves and French, 1983; Fryxell, 1990). Various external factors like availability of nutrients (N, P, Fe, Si.... 128, 497-508. 15 Lewis, J., Harris, A.S.D., Jones, K.J., Edmonds, R.L., 1999. Long-term survival of marine planktonic diatoms and dinoflagellates in stored sediment samples. J. Plank. Res. 21, 343- 354. Malone, T.C., 1980. Algal size. In...

Decadal variations in diatoms and dinoflagellates on the inner shelf of the East China Sea, China

Science.gov (United States)

Abate, Rediat; Gao, Yahui; Chen, Changping; Liang, Junrong; Mu, Wenhua; Kifile, Demeke; Chen, Yanghang

2017-11-01

Diatoms and dinoflagellates are two major groups of phytoplankton that flourish in the oceans, particularly in coastal zone and upwelling systems, and their contrasting production have been reported in several world seas. However, this information is not available in the coastal East China Sea (ECS). Thus, to investigate and compare the decadal trends in diatoms and dinoflagellates, a sediment core, 47 cm long, was collected from the coastal zone of the ECS. Sediment chlorophyll- a (Chl- a), phytoplankton-group specific pigment signatures of diatoms and dinoflagellates, and diatom valve concentrations were determined. The sediment core covered the period from 1961 to 2011 AD. The chlorophyll- a contents ranged from 2.32 to 73 µg/g dry sediment (dw) and averaged 9.81 µg/g dw. Diatom absolute abundance ranged from 29152 to 177501 valve/gram (v/g) dw and averaged 72137 v/g dw. Diatom valve and diatom specific pigment marker concentrations were not significantly correlated. Peridinin increased after the 1980s in line with intensified use of fertilizer and related increases in nutrient inputs into the marine environment. The increased occurrence of dinoflagellate dominance after the 1980s can be mostly explained by the increase in nutrients. However, the contribution of dinoflagellates to total phytoplankton production (Chl- a) decreased during the final decade of this study, probably because of the overwhelming increase in diatom production that corresponded with the construction of the Three Gorges Dam (TGD) and related light availability. Similarly, the mean ratio of fucoxanthin/peridinin for the period from 1982 to 2001 was 6% less than for 1961 to 1982, while the ratio for 2001 to 2011 was 45.3% greater than for 1982 to 2001. The decadal variation in the fucoxanthin/peridinin ratio implies that dinoflagellate production had been gradually increasing until 2001. We suggest that the observed changes can be explained by anthropogenic impacts, such as nutrient

Paleoceanographic, and paleoclimatic constraints on the global Eocene diatom and silicoflagellate record

Science.gov (United States)

Barron, John A.; Stickley, Catherine E.; Bukry, David

2015-01-01

Eocene diatom and silicoflagellate biostratigraphy are summarized and correlated with the most recent geologic time scale as well as with the global oxygen isotope and eustatic sea level curves. The global distribution of Eocene diatom/silicoflagellate-bearing sediments varies considerably, reflecting changing oceanic gateways and paleoceanography with changing patterns that are punctuated by four major depositional events.

Eighty years of food-web response to interannual variation in discharge recorded in river diatom frustules from an ocean sediment core.

Science.gov (United States)

Sculley, John B; Lowe, Rex L; Nittrouer, Charles A; Drexler, Tina M; Power, Mary E

2017-09-19

Little is known about the importance of food-web processes as controls of river primary production due to the paucity of both long-term studies and of depositional environments which would allow retrospective fossil analysis. To investigate how freshwater algal production in the Eel River, northern California, varied over eight decades, we quantified siliceous shells (frustules) of freshwater diatoms from a well-dated undisturbed sediment core in a nearshore marine environment. Abundances of freshwater diatom frustules exported to Eel Canyon sediment from 1988 to 2001 were positively correlated with annual biomass of Cladophora surveyed over these years in upper portions of the Eel basin. Over 28 years of contemporary field research, peak algal biomass was generally higher in summers following bankfull, bed-scouring winter floods. Field surveys and experiments suggested that bed-mobilizing floods scour away overwintering grazers, releasing algae from spring and early summer grazing. During wet years, growth conditions for algae could also be enhanced by increased nutrient loading from the watershed, or by sustained summer base flows. Total annual rainfall and frustule densities in laminae over a longer 83-year record were weakly and negatively correlated, however, suggesting that positive effects of floods on annual algal production were primarily mediated by "top-down" (consumer release) rather than "bottom-up" (growth promoting) controls.

Sampler collection gadget for epilithic diatoms

Directory of Open Access Journals (Sweden)

SE. Salomoni

Full Text Available This work present a new gadget for sampling epilithic diatoms from both lentic and lotic enviroments. The sampler consists of a polystyrene cylinder, left to float on the surface of the water, to which stone substrates are attached. This epilithic diatom sampler (EDS can be used to detect spatial and temporal richness and density variation in the study of the diatom community, as well as in water quality monitoring.

Diatom assemblage in a tropical lake of northeastern Brazil

Directory of Open Access Journals (Sweden)

Lilian Rodrigues do Nascimento

2010-02-01

Full Text Available The composition and spatial variation of diatom assemblage in surface sediments of Caçó Lake (shallow, mesotrophic and weakly acid lake - Maranhão State, Brazil were analyzed in order to know the distribution pattern of the species along the lake during rainy season (April 1999. Four zones were established in the lake based on 21 diatoms species and habitat affinities. The first three zones (prime three meters deep to six meters deep were marked by the occurrence of Pinnularia gigas, Frustulia rhomboides, Encyonopsis krasskei, Eunotia camelus, E. femoriformis and E. monodon. Zone IV (seven to nine meters deep was inhabited mainly by Surirella biseriata and Fragilariforma floridana. During the beginning of the rainy season, the diatom assemblage in Caçó Lake was composed mainly by benthic and epiphytic forms that reflected the low lake levels and the abundance of littoral vegetation present in this lake.Com o objetivo de se conhecer a dinâmica espacial e a distribuição das diatomáceas contidas no sedimento superficial do lago Caçó, durante o período de chuvas (abril de 1999 foram realizadas coletas em um "transect" horizontal. A partir da observação destas coletas efetuadas a cada 1 metro pode-se observar que a distribuição das diatomáceas esteve fortemente ligada a ocorrência do banco de macrófitas da sua margem, com a ocorrência maciça das espécies epifíticas e bentônicas. A análise de agrupamento de dados permitiu uma melhor visualização, da sua distribuição a cada profundidade e também das associações específicas em cada zona. Os resultados deste estudo permitiram concluir que a ocorrência e distribuição das diatomáceas do Lago Caçó está fortemente ligada ao banco de macrófitas localizado em suas margens, definindo assim zonas características dentro do lago.

Tracing carbon flow from microphytobenthos to major bacterial groups in an intertidal marine sediment by using an in situ

NARCIS (Netherlands)

Miyatake, T.; Moerdijk-Poortvliet, T.C.W.; Stal, L.J.; Boschker, H.T.S.

2014-01-01

Carbon flow from benthic diatoms to heterotrophic bacterial was traced in an intertidal sediment for 5consecutive days. 13C-labeled bicarbonate was sprayed onto the sediment surface during low tide and 13C-labelincorporation in major carbon pools, intermediate metabolites, and biomarkers were

Modern processes of sediment formation in Lake Towuti, Indonesia, as derived from the composition of lake surface sediments

Science.gov (United States)

Hasberg, Ascelina; Melles, Martin; Morlock, Marina; Vogel, Hendrik; Russel, James M.; Bijaksana, Satria

2016-04-01

the shore the grain size and magnetic susceptibility decrease, but the organic carbon vs. total sulfur (C/S) ratio and the redox-sensitive elements such as U, Cd, Mo, and V increase. This suggests that sulfur accumulation in lake Towuti is controlled by autochthoneous pyrite formation, in dependence on differences in redox conditions, rather than gypsum accumulation. Highest silicon (Si) concentrations appear in front of the four major inlets of Lake Towuti, however, a distinct maximum also occurs close to the southeastern shore, where larger river inlets are missing. Hence, the silicon distribution is partly controlled by fluvial input and partly by biogenic silica deposition; the latter is confirmed by high concentrations of pelagic and benthic diatoms as well as sponge spiculae in smear slides from the sediments at the southeastern shore. Hence, the data thus far obtained on the surface sediments of lake Towuti show a strong influence of fluvial sediment supply and water-depth dependent redox conditions on the sediment composition. No indication, in contrast, was found for a significant influence of lake currents on the distribution of the sediments supplied by riverine input.

Eco-biology of marine diatoms with emphasis on the influence of physico-chemical parameters

Digital Repository Service at National Institute of Oceanography (India)

Mitbavkar, S.

cell abundance of epipelic diatoms was high only during the morning low tide whereas in winter it was found to be the highest during the mid-morning high tide and continued to be so even during the following evening low tide. This ability... of microphytobenthos to migrate vertically within the surface sediment when their requirements are fulfilled may be considered as a form of behavioral photoacclimation, allowing cells to avoid potentially 166 damaging irradiance and temperature conditions (Kromkamp...

Surface sedimentation at permeable pavement systems

DEFF Research Database (Denmark)

Støvring, Jan; Dam, Torben; Jensen, Marina Bergen

2018-01-01

Newly installed permeable pavement (PP) systems provide high surface infiltration capacity, but the accumulation of sediments causes a decrease in capacity over time, eventually leading to surface clogging. With the aim of investigating local sedimentation processes and the importance of restorat......Newly installed permeable pavement (PP) systems provide high surface infiltration capacity, but the accumulation of sediments causes a decrease in capacity over time, eventually leading to surface clogging. With the aim of investigating local sedimentation processes and the importance...

Holocene sediment accumulation in the Aespoe area. A study of a sediment core

International Nuclear Information System (INIS)

Risberg, Jan

2002-12-01

A sediment core was collected in 1993 in the archipelago above the tunnel between the Aespoe Island and Simpevarp nuclear power plant. The sediment sequence consists of four types of accumulations: brownish clay, bluish clay, sand mixed with gravel and gyttja. The sequence was studied according to its content of siliceous microfossils (mainly diatoms), mineral magnetic characteristics, clay mineralogy and it was dated by the AMS technique on bulk sediment samples. According to the diatom content, both types of clay were probably deposited during the brackish water Yoldia Sea stage. The clay is relatively uniform, except an abrupt increase in the mineral magnetic parameters HIRM and S-ratio at around 810 cm depth, which probably is the result from a change in the material source. The clay mineralogy, with enhanced chlorite values, indicates a relatively uniform material. A major change occurs at the transition from the bluish to brownish clay, where all magnetic concentrations drop dramatically as the result from a major shift in material source and/or sedimentation environment. The thin layer of sand and gravel is indicative of a major hiatus in the stratigraphy. Mineral magnetic concentrations increase slightly as the result from mixing with single domain ground surface generated particles. Based on a Yoldia Sea age for the underlying clay and deposition in the Litorina Sea 3000 years BP for the superimposed gyttja, it is suggested that the length of the hiatus is about 7000 years. It is not until the studied site became protected enough by rising land areas, that organic rich gyttja started to accumulate.It is likely that this scenario was established when sea level was situated at around 10 m above present day. Since then it seems, as determined from the mineral magnetic graphs, that the sedimentary conditions have been relatively uniform. More pronounced fluctuations in mineral magnetic concentrations (especially ARM/SIRM ratios)in the upper 2 m of the core

Holocene sediment accumulation in the Aespoe area. A study of a sediment core

Energy Technology Data Exchange (ETDEWEB)

Risberg, Jan [Stockholm Univ. (Sweden). Dept. of Quaternary Research

2002-12-01

A sediment core was collected in 1993 in the archipelago above the tunnel between the Aespoe Island and Simpevarp nuclear power plant. The sediment sequence consists of four types of accumulations: brownish clay, bluish clay, sand mixed with gravel and gyttja. The sequence was studied according to its content of siliceous microfossils (mainly diatoms), mineral magnetic characteristics, clay mineralogy and it was dated by the AMS technique on bulk sediment samples. According to the diatom content, both types of clay were probably deposited during the brackish water Yoldia Sea stage. The clay is relatively uniform, except an abrupt increase in the mineral magnetic parameters HIRM and S-ratio at around 810 cm depth, which probably is the result from a change in the material source. The clay mineralogy, with enhanced chlorite values, indicates a relatively uniform material. A major change occurs at the transition from the bluish to brownish clay, where all magnetic concentrations drop dramatically as the result from a major shift in material source and/or sedimentation environment. The thin layer of sand and gravel is indicative of a major hiatus in the stratigraphy. Mineral magnetic concentrations increase slightly as the result from mixing with single domain ground surface generated particles. Based on a Yoldia Sea age for the underlying clay and deposition in the Litorina Sea 3000 years BP for the superimposed gyttja, it is suggested that the length of the hiatus is about 7000 years. It is not until the studied site became protected enough by rising land areas, that organic rich gyttja started to accumulate.It is likely that this scenario was established when sea level was situated at around 10 m above present day. Since then it seems, as determined from the mineral magnetic graphs, that the sedimentary conditions have been relatively uniform. More pronounced fluctuations in mineral magnetic concentrations (especially ARM/SIRM ratios)in the upper 2 m of the core

Diatom-induced silicon isotopic fractionation in Antarctic sea ice

Science.gov (United States)

Francois, F.; Damien, C.; Jean-Louis, T.; Anthony, W.; Luc, A.

2006-12-01

We measured silicon-isotopic composition of dissolved silicon and biogenic silica collected by sequential melting from spring 2003 Antarctic pack ice (Australian sector). Sea ice is a key ecosystem in the Southern Ocean and its melting in spring has been often thought to have a seeding effect for the surface waters, triggering blooms in the mixed layer. This work is the first investigation of the silicon isotopes' proxy in sea ice and allows to estimate the activity of sea-ice diatoms in the different brine structures and the influence of sea- ice diatoms on the spring ice edge blooms. The relative use of the dissolved silicon pool by sea-ice diatoms is usually assessed by calculating nutrient:salinity ratios in the brines. However such an approach is biased by difficulties in evaluating the initial nutrient concentrations in the different brines structures, and by the impossibility to account for late sporadic nutrient replenishments. The silicon-isotopic composition of biogenic silica is a convenient alternative since it integrates an average Si utilization on all generations of diatoms. Measurements were performed on a MC-ICP-MS, in dry plasma mode using external Mg doping. Results are expressed as delta29Si relative to the NBS28 standard. From three sea ice cores with contrasted physico-chemical characteristics, we report significant isotopic fractionations linked to the diatoms activity, with distinct silicon biogeochemical dynamics between different brine structure. The diatoms in snow ice and in brine pockets of frazil or congelation ice have the most positive silicon-isotopic composition (+0.53 to +0.86 p.mil), indicating that they grow in a closed system and use a significant part of the small dissolved silicon pool. In the brine channels and skeletal layer, diatoms display a relatively less positive Si-isotopic composition (+0.41 to +0.70 p.mil), although it is still heavier compared to equilibrium fractionation (+0.38 p.mil). This suggests that they have

Kinetic control on Zn isotope signatures recorded in marine diatoms

Science.gov (United States)

Köbberich, Michael; Vance, Derek

2017-08-01

Marine diatoms dominate the oceanic cycle of the essential micronutrient zinc (Zn). The stable isotopes of zinc and other metals are increasingly used to understand trace metal micronutrient cycling in the oceans. One clear feature of the early isotope data is the heavy Zn isotope signature of the average oceanic dissolved pool relative to the inputs, potentially driven by uptake of light isotopes into phytoplankton cells and export to sediments. However, despite the fact that diatoms strip Zn from surface waters across the Antarctic polar front in the Southern Ocean, the local upper ocean is not isotopically heavy. Here we use culturing experiments to quantify the extent of Zn isotope fractionation by diatoms and to elucidate the mechanisms driving it. We have cultured two different open-ocean diatom species (T. oceanica and Chaetoceros sp.) in a series of experiments at constant medium Zn concentration but at bioavailable medium Fe ranging from limiting to replete. We find that T. oceanica can maintain high growth rates and Zn uptake rates over the full range of bioavailable iron (Fe) investigated, and that the Zn taken up has a δ66Zn that is unfractionated relative to that of the bioavailable free Zn in the medium. The studied representative of the genus Chaetoceros, on the other hand, shows more significantly reduced Zn uptake rates at low Fe and records more variable biomass δ66Zn signatures, of up to 0.85‰ heavier than the medium. We interpret the preferential uptake of heavy isotopes at extremely low Zn uptake rates as potentially due to either of the following two mechanisms. First, the release of extracellular polymeric substances (EPS), at low Fe levels, may preferentially scavenge heavy Zn isotopes. Second, the Zn uptake rate may be slow enough to establish pseudo-equilibrium conditions at the transporter site, with heavy Zn isotopes forming more stable surface complexes. Thus we find that, in our experiments, Fe-limitation exerts a key control that

Eighty years of food-web response to interannual variation in discharge recorded in river diatom frustules from an ocean sediment core

Science.gov (United States)

Sculley, John B.; Lowe, Rex L.; Nittrouer, Charles A.; Drexler, Tina M.; Power, Mary E.

2017-01-01

Little is known about the importance of food-web processes as controls of river primary production due to the paucity of both long-term studies and of depositional environments which would allow retrospective fossil analysis. To investigate how freshwater algal production in the Eel River, northern California, varied over eight decades, we quantified siliceous shells (frustules) of freshwater diatoms from a well-dated undisturbed sediment core in a nearshore marine environment. Abundances of freshwater diatom frustules exported to Eel Canyon sediment from 1988 to 2001 were positively correlated with annual biomass of Cladophora surveyed over these years in upper portions of the Eel basin. Over 28 years of contemporary field research, peak algal biomass was generally higher in summers following bankfull, bed-scouring winter floods. Field surveys and experiments suggested that bed-mobilizing floods scour away overwintering grazers, releasing algae from spring and early summer grazing. During wet years, growth conditions for algae could also be enhanced by increased nutrient loading from the watershed, or by sustained summer base flows. Total annual rainfall and frustule densities in laminae over a longer 83-year record were weakly and negatively correlated, however, suggesting that positive effects of floods on annual algal production were primarily mediated by “top-down” (consumer release) rather than “bottom-up” (growth promoting) controls. PMID:28874576

Diatom evidence for the onset of Pliocene cooling from AND-1B, McMurdo Sound, Antarctica

Science.gov (United States)

Riesselman, Christina; Dunbar, R. B.

2013-01-01

The late Pliocene, ~ 3.3–3.0 Ma, is the most recent interval of sustained global warmth in the geologic past. This window is the focus of climate reconstruction efforts by the U.S. Geological Survey's Pliocene Research, Interpretation, and Synoptic Mapping (PRISM) Data/Model Cooperative, and may provide a useful climate analog for the coming century. Reconstructions of past surface ocean conditions proximal to the Antarctic continent are essential to understanding the sensitivity of the cryosphere to this key interval in Earth's climate evolution. An exceptional marine sediment core collected from the southwestern Ross Sea (78° S), Antarctica, during ANDRILL's McMurdo Ice Shelf Project preserves evidence of dramatic fluctuations between grounded ice and productive, open ocean conditions during the late Pliocene, reflecting orbitally-paced glacial/interglacial cycling. In this near-shore record, diatom-rich sediments are recovered from interglacial intervals; two of these diatomites, from ~ 3.2 Ma and 3.03 Ma, are within the PRISM chronologic window. The diatom assemblages identified in PRISM-age late Pliocene diatom-rich sediments are distinct from those in mid-Pliocene and later Pliocene/Pleistocene intervals recovered from AND-1B, and comprise both extant taxa with well-constrained ecological preferences and a diverse extinct flora, some members of which are previously undescribed from Antarctic sediments. Both units are dominated by Chaetoceros resting spores, an indicator of high productivity and stratification that is present at much lower abundance in materials both older and younger than the PRISM-age sediments. Newly described species of the genus Fragilariopsis, which first appear in the AND-1B record at 3.2 Ma, are the most abundant extinct members of the PRISM-age assemblages. Other extant species with established environmental affinities, such as Fragilariopsis sublinearis, F. curta, Stellarima microtrias, and Thalassiothrix antarctica, are

Groundfish overfishing, diatom decline, and the marine silica cycle: Lessons from Saanich Inlet, Canada, and the Baltic Sea cod crash

Science.gov (United States)

Katz, Timor; Yahel, Gitai; Yahel, Ruthy; Tunnicliffe, Verena; Herut, Barak; Snelgrove, Paul; Crusius, John; Lazar, Boaz

2009-12-01

In this study, we link groundfish activity to the marine silica cycle and suggest that the drastic mid-1980s crash of the Baltic Sea cod (Gadus morhua) population triggered a cascade of events leading to decrease in dissolved silica (DSi) and diatom abundance in the water. We suggest that this seemingly unrelated sequence of events was caused by a marked decline in sediment resuspension associated with reduced groundfish activity resulting from the cod crash. In a study in Saanich Inlet, British Columbia, Canada, we discovered that, by resuspending bottom sediments, groundfish triple DSi fluxes from the sediments and reduce silica accumulation therein. Using these findings and the available oceanographic and environmental data from the Baltic Sea, we estimate that overfishing and recruitment failure of Baltic cod reduced by 20% the DSi supply from bottom sediments to the surface water leading to a decline in the diatom population in the Baltic Sea. The major importance of the marginal ocean in the marine silica cycle and the associated high population density of groundfish suggest that groundfish play a major role in the silica cycle. We postulate that dwindling groundfish populations caused by anthropogenic perturbations, e.g., overfishing and bottom water anoxia, may cause shifts in marine phytoplankton communities.

Tracing carbon flow from microphytobenthos to major bacterial groups in an intertidal marine sediment by using an in situ 13C pulse-chase method

NARCIS (Netherlands)

Miyatake, T.; Moerdijk-Poortvliet, T.C.W.; Stal, L.J.; Boschker, H.T.S.

2014-01-01

Carbon flow from benthic diatoms to heterotrophic bacterial was traced in an intertidal sediment for 5 consecutive days. 13C-labeled bicarbonate was sprayed onto the sediment surface during low tide and 13C-label incorporation in major carbon pools, intermediate metabolites, and biomarkers were

Permeability-Porosity Relationships of Subduction Zone Sediments

Science.gov (United States)

Gamage, K.; Screaton, E.; Bekins, B.; Aiello, I.

2008-12-01

Permeability-porosity relationships for sediments from Northern Barbados, Costa Rica, Nankai, and Peru subduction zones were examined based on their sediment type and grain size distribution. Greater correlation was observed between permeability and porosity for siliciclastic sediments, diatom oozes, and nannofossil chalk than for nannofossil oozes. For siliciclastic sediments, grouping of sediments by clay content yields relationships that are generally consistent with results from other marine settings and suggest decreasing permeability for a given porosity as clay content increases. Correction of measured porosities for smectite content generally improves the quality of permeability-porosity relationships. The relationship between permeability and porosity for diatom oozes may be controlled by the amount of clay present in the ooze, causing diatom oozes to behave similarly to siliciclastic sediments. For a given porosity the nannofossil oozes have higher permeability values by 1.5 orders of magnitude than the siliciclastic sediments. However, the use of a permeability-porosity relation may not be appropriate for unconsolidated carbonates such as nannofossil oozes. This study provided insight to the effects of porosity correction for smectite, variations in lithology and grain size in permeability-porosity relationships. However, further progress in delineating controls on permeability will require more careful and better documented permeability tests on characterized samples.

Isolation and biochemical characterization of underwater adhesives from diatoms.

Science.gov (United States)

Poulsen, Nicole; Kröger, Nils; Harrington, Matthew J; Brunner, Eike; Paasch, Silvia; Buhmann, Matthias T

2014-01-01

Many aquatic organisms are able to colonize surfaces through the secretion of underwater adhesives. Diatoms are unicellular algae that have the capability to colonize any natural and man-made submerged surfaces. There is great technological interest in both mimicking and preventing diatom adhesion, yet the biomolecules responsible have so far remained unidentified. A new method for the isolation of diatom adhesive material is described and its amino acid and carbohydrate composition determined. The adhesive materials from two model diatoms show differences in their amino acid and carbohydrate compositions, but also share characteristic features including a high content of uronic acids, the predominance of hydrophilic amino acid residues, and the presence of 3,4-dihydroxyproline, an extremely rare amino acid. Proteins containing dihydroxyphenylalanine, which mediate underwater adhesion of mussels, are absent. The data on the composition of diatom adhesives are consistent with an adhesion mechanism based on complex coacervation of polyelectrolyte-like biomolecules.

Diatom, cyanobacterial and microbial mats as indicators of hydrocarbon contaminated Arctic streams and waters

Energy Technology Data Exchange (ETDEWEB)

Ziervogel, H.; Selann, J.; Adeney, B. [EBA Engineering Consultants Ltd., Edmonton, AB (Canada); Nelson, J.A. [J.B. Services, Sarnia, ON (Canada); Murdock, E. [Nunavut Power, Iqaluit (Canada)

2003-07-01

An environmental assessment conducted at Repulse Bay, Nunavut in the summer of 2001 revealed a recent diesel spill flowing from the groundwater into a creek. The spill had not been reported. When Arctic surface waters mix with hydrocarbon impacted groundwater and sediments, distinctive mats of diatom, cyanobacteria and other bacteria are formed. These mats have the potential for phytoremediation of hydrocarbons. This paper explained the apparent dominance of mats in contaminated Arctic waters and why they promote biodegradation of hydrocarbons. Hydrocarbon-contaminated soils and groundwater are generally anaerobic. The higher dissolved carbon dioxide in polluted soils and groundwater can benefit photosynthetic cyanobacteria and diatom found in oligotrophic, lower alkalinity Arctic waters. The anaerobic and aerobic bacteria can potentially take advantage of the hydrogen substrate and the nitrogen fixing abilities of the cyanobacteria. Zooplankton predators may be killed off by the toxicity of the polluted groundwater. The paper provides examples where a microbial mat reduced the sulfate content of a hydrocarbon-impacted Arctic stream by 100 ppm, and where a pond covered in a benthic microbial mat showed no evidence of hydrocarbons in the water overlying sediments contaminated with hydrocarbons at concentrations measured at 30,000 ppm. 19 refs., 3 tabs., 8 figs.

Amino acid and hexosamine in the equatorial western Pacific: vertical fluxes and individual preservation through water column to surface sediments

Science.gov (United States)

Kawahata, H.; Gupta, L. P.; Ishizuka, T.

2002-12-01

Amino acids (AA) and hexosamines (HA) are major constituents for all living organisms, constituting important fractions of labile organic carbon and nitrogen. They usually decompose rapidly than bulk OM and must be expected to be closely linked to biogeochemical processes. In spite of such importance, our understanding of degradation processes of labile components is still limited. Therefore vertical fluxes and preservation of AA and HA from water column to surface sediments are investigated at the western equatorial Pacific. The settling particles were composed of fairly fresh AA, which could be derived from siliceous diatom with less amount of calcareous plankton. In contrast, AA were degraded in sediments and porewaters. Each AA showed highly variable preservation ratio from settling to sedimentary particles. Compared with glycine, the calculated preservation ratio was the lowest (0%) for cysteine, followed by phenylalanine (6%), tyrosine (17%), methionine (47%), leucine (60%), isoleucine (65%), proline (67%), valine (91%), serine (99%), arginine (107%), threonine (112%), alanine (115%), glutamic acid (114%), aspartic acid (150%), lysine (166%) and histidine (186%). Beta-alanine and gamma-aminobutyric acid were the least labile AA. Probably they are so difficult to degrade for bacteria to get biochemical energy that the degradation proceeds fairly slowly. In contrast, after burial, even most labile, aromatic and sulfur-containing AA, degrade at a rate similar to the other protein AA. In spite of complicated reactions, most of the AA showed first-order reaction kinetics during the degradation in the sediments. The decomposition rate constant k (kyr-1) in this study was 2-3 orders lower than those in coastal marine environments. Better preservation of HA over AA in the sediments was probably due to the general incorporation of HA into structural biopolymer matrices, such as bacterial cell-walls and chitinous material. Abundant glycine in the AA in the sediments is

Earth Surface Processes, Landforms and Sediment Deposits

Science.gov (United States)

Bridge, John; Demicco, Robert

Earth surface processes, landforms and sediment deposits are intimately related - involving erosion of rocks, generation of sediment, and transport and deposition of sediment through various Earth surface environments. These processes, and the landforms and deposits that they generate, have a fundamental bearing on engineering, environmental and public safety issues; on recovery of economic resources; and on our understanding of Earth history. This unique textbook brings together the traditional disciplines of sedimentology and geomorphology to explain Earth surface processes, landforms and sediment deposits in a comprehensive and integrated way. It is the ideal resource for a two-semester course in sedimentology, stratigraphy, geomorphology, and Earth surface processes from the intermediate undergraduate to beginning graduate level. The book is also accompanied by a website hosting illustrations and material on field and laboratory methods for measuring, describing and analyzing Earth surface processes, landforms and sediments.

Holocene sea-level changes in King George Island, West Antarctica, by virtue of geomorphological coastal evidences and diatom assemblages of sediment sections.

Science.gov (United States)

Poleshchuk, Ksenia; Verkulich, Sergey; Pushina, Zina; Jozhikov, Ilya

2015-04-01

A new curve of relative sea-level change is presented for the Fildes peninsula, King George Island, West Antarctic. This work is based on renewed paleogeography data, including coastal geomorphological evidence, diatom assemblages of lakes bottom sediments and radiocarbon datings of organics. The new data were obtained in several sections of quaternary sediments and groups of terraces, and allows us to expand and improve relevant conception about relative sea level changes in the King George Island region. The new radiocarbon datings of organics (mosses and shells) allows reconstructing Holocene conditions that maintain and cause the sea-level changes. Sea diatom assemblages of Dlinnoye lake bottom sediment core (that complies period about 8000 years B.P.) mark altitude of marine water penetrated into the lake. The altitudes of shell remains, which have certain life habits and expect specific salinity and depth conditions, coupled with their absolute datings, indicate the probable elevation of the past sea level. The Mid-Holocene marine transgression reached its maximum level of 18-20 m by 5760 years B.P. The transgression influenced the deglaciation of the Fildes peninsula and environment conditions integrally. The ratio of glacio-isostatic adjustment velocity and Holocene transgression leaded to the decrease of relative sea level during the Late Holocene excluding the short period of rising between 2000 and 1300 years B.P. Comparing this data with the curve for Bunger oasis, East Antarctica, introduced earlier gives an interesting result. Despite the maximum altitudes of relative sea-level rise in King George region were higher and occurred later than in Bunger oasis region, the short-term period of Late Holocene sea-level rising contemporizes. Besides that, this work allow to realize a correlation between regions of Antarctica and adjacent territory. That, in turn, lets answer the question of tectonic and eustatic factors ratio and their contribution to the

Si and C interactions in the world ocean: Importance of ecological processes and implications for the role of diatoms in the biological pump

Science.gov (United States)

Ragueneau, Olivier; Schultes, Sabine; Bidle, Kay; Claquin, Pascal; Moriceau, BrivaëLa

2006-12-01

Diatoms play a major role in carbon export from surface waters, but their role in the transport of carbon to the deep sea has been questioned by global analyses of sediment trap fluxes which suggest that organic carbon fluxes and transfer efficiencies through the mesopelagic are tightly correlated with CaCO3 (Klaas and Archer, 2002; François et al., 2002). Here we explore the role of diatoms in the biological pump through a study of Si and C interactions from the molecular to the global scale. Recent findings on molecular interactions between Si and C are reviewed. The roles of bacteria, grazers and aggregation are explored and combined, to account for the extent of Si and C decoupling between surface waters and 1000 m, observed to be very homogeneous in different biogeochemical provinces of the ocean. It is suggested that the mesopelagic food web plays a crucial role in this homogeneity: Sites of high export are also sites where diatom C is being either remineralized or channeled toward the long-lived carbon pool most efficiently in the mesopelagic zone. The amount of carbon participating in the biological pump but not collected in sediment traps remains to be explored. It is also demonstrated that statistical analyses performed at global scales hide spatial variability in carrying coefficients, indicating a clear need to understand the mechanisms that control spatial and temporal variations in the relative importance of ballast minerals and other export mechanisms such as particle dynamics.

Diatoms and the nanotechnology

International Nuclear Information System (INIS)

Toekesi, K.; Bereczky, R.J.; Lakatos, Gy.; Cserhati, C.

2004-01-01

Complete text of publication follows. During the last decade studies of interactions between highly charged ions (HCI) and solid surfaces are at the center of interest which is partly stimulated by potential future technical application such as nanofabrication. The investigation of the interactions of highly charged ions with internal surfaces recently become available due to the advances in the fabrication of micro- and nanocapillaries. These target materials offer the opportunity to observe 'hollow atom' formation in free space. Hollow atoms are an exotic form of matter where the atomic charge cloud resides in shells with large diameters while the core is virtually empty. In the past there has been an increasing amount of indirect evidence for the existence of this atomic state. Microcapillary transmission promises to provide direct evidence for the hollow atom formation for the first time. Our earlier theoretical descriptions rely on metallic microcapillaries which have proven to be quite successful in comparison with experimental data. However, since very detailed measurements have recently become available for insulator nanocapillaries, critical and precise tests of theory are only now being possible. We note, that the theoretical description of the interaction between the HCI and insulator nanocapillaries is far from being well understood. One of the key point of the experimental investigations is the preparation of the nanocapillaries. In this work we propose an alternative way to prepare insulator nanocapillaries. We take an advantage of the nature that during the evolution the cylindrical shape nanostructure was developed as a truss of diatoms. The truss of the diatoms contains roughly 99 % SiO 2 and in some cases of diatoms it form almost ideal cylindrical shape. As an example Fig. 1 shows the scanning electron micrograph of the diatom. The size of the holes in the truss are in the nanometer range (see Fig. 1a). On the basis of these properties the

Thick-shelled, grazer-protected diatoms decouple ocean carbon and silicon cycles in the iron-limited Antarctic Circumpolar Current

Science.gov (United States)

Assmy, Philipp; Smetacek, Victor; Montresor, Marina; Klaas, Christine; Henjes, Joachim; Strass, Volker H.; Arrieta, Jesús M.; Bathmann, Ulrich; Berg, Gry M.; Breitbarth, Eike; Cisewski, Boris; Friedrichs, Lars; Fuchs, Nike; Herndl, Gerhard J.; Jansen, Sandra; Krägefsky, Sören; Latasa, Mikel; Peeken, Ilka; Röttgers, Rüdiger; Scharek, Renate; Schüller, Susanne E.; Steigenberger, Sebastian; Webb, Adrian; Wolf-Gladrow, Dieter

2013-01-01

Diatoms of the iron-replete continental margins and North Atlantic are key exporters of organic carbon. In contrast, diatoms of the iron-limited Antarctic Circumpolar Current sequester silicon, but comparatively little carbon, in the underlying deep ocean and sediments. Because the Southern Ocean is the major hub of oceanic nutrient distribution, selective silicon sequestration there limits diatom blooms elsewhere and consequently the biotic carbon sequestration potential of the entire ocean. We investigated this paradox in an in situ iron fertilization experiment by comparing accumulation and sinking of diatom populations inside and outside the iron-fertilized patch over 5 wk. A bloom comprising various thin- and thick-shelled diatom species developed inside the patch despite the presence of large grazer populations. After the third week, most of the thinner-shelled diatom species underwent mass mortality, formed large, mucous aggregates, and sank out en masse (carbon sinkers). In contrast, thicker-shelled species, in particular Fragilariopsis kerguelensis, persisted in the surface layers, sank mainly empty shells continuously, and reduced silicate concentrations to similar levels both inside and outside the patch (silica sinkers). These patterns imply that thick-shelled, hence grazer-protected, diatom species evolved in response to heavy copepod grazing pressure in the presence of an abundant silicate supply. The ecology of these silica-sinking species decouples silicon and carbon cycles in the iron-limited Southern Ocean, whereas carbon-sinking species, when stimulated by iron fertilization, export more carbon per silicon. Our results suggest that large-scale iron fertilization of the silicate-rich Southern Ocean will not change silicon sequestration but will add carbon to the sinking silica flux. PMID:24248337

Centennial-scale variations in diatom productivity off Peru over the last 3000 years

Science.gov (United States)

Fleury, Sophie; Crosta, Xavier; Schneider, Ralph; Blanz, Thomas; Ther, Olivier; Martinez, Philippe; Kim, Jung-Hyun

2016-04-01

The Peruvian coastal upwelling is one of the most productive systems in the global ocean, with important impacts on the carbon cycle. Primary productivity there displays strong variations at the inter-annual to decadal timescales. However, down-core investigations rarely reach sufficient temporal resolution to assess the response of productivity to climatic variations at these timescales beyond the instrumental and historical periods. We here analyzed diatom assemblages, sea-surface temperatures, nitrogen and organic carbon contents on a laminated sediment core from the Peruvian continental shelf to trace variations in regional productivity over the last 3000 years. Our record provides evidence for different climatic and oceanic conditions with more humid and less productive conditions older than 2500 Cal years BP and drier and more productive conditions younger than 2500 Cal years BP. The last 2500 years also present much stronger centennial-scale variability with the occurrence of six intervals with higher total diatom abundances and stronger percentages in upwelling-related diatom species, representative of intensified productivity, congruent to lower percentages in benthic diatoms, indicative of reduced rainfall. These six periods were synchronous to intervals of enhanced Walker circulation, suggesting a strong imprint of the Pacific zonal circulation on productivity variations off Peru. Our record also demonstrates that SSTs did not vary in phase with productivity, arguing against the idea of regional SSTs controlled by the upwelling intensity, but were rather in agreement to SST records off southern Chile, suggesting that Peruvian SSTs variations were largely controlled by oceanic currents at southern high latitudes.

Tinted windows: The presence of the UV absorbing compounds called mycosporine-like amino acids embedded in the frustules of marine diatoms

Science.gov (United States)

Ingalls, Anitra E.; Whitehead, Kenia; Bridoux, Maxime C.

2010-01-01

Diatom frustule-bound organic compounds presumably play an important role in biomineralization and constitute an important pool of organic matter preserved in diatom frustule-rich sediments. In this study, detailed analysis of diatom frustule-bound organic matter in opal-rich Southern Ocean plankton and sediments revealed for the first time the presence of low molecular weight, UV light absorbing compounds called mycosporine-like amino acids (MAAs). Chemically cleaned diatom frustule-derived biosilica was dissolved in HF, releasing bound or entrapped organic compounds that were subsequently characterized using liquid chromatography with UV-Vis and electrospray ionization mass spectrometry (LC/PDA/ESI-MS). Palythine ([M+H] + = 245), porphyra-334 ([M+H] + = 347) and shinorine ([M+H] + = 333) were the most abundant MAAs detected in HF digests of plankton and sediment. Traces of asterina ([M+H] + = 289), palythinol ([M+H] + = 303) and palythinic acid ([M+H] + = 329) were also detected. MAAs in cleaned HF digested frustules were up to two orders of magnitude more abundant than methanol extractable MAAs. MAAs are substituted with acid hydrolysable amino acid residues. Our results suggest that MAAs, and not proteins, could be responsible for the high proportion of the amino acids glycine and threonine found in hydrolysates of HF digested diatom-rich environmental samples. Total MAAs accounted for 3-27% of the carbon and 2-18% of total nitrogen in the frustules undergoing various chemical cleaning treatments. This is the first report of MAAs in close association with a mineral phase and we hypothesize that the mineral matrix could stabilize these compounds, thereby enhancing photoprotection against the harmful effects of UV light. The presence of frustule-bound MAAs in sediment cores further suggests the possibility that they could be used in compound-specific isotope analysis of diatom-bound organic matter and as indicators of past solar irradiance.

Atmospheric deposition, water-quality, and sediment data for selected lakes in Mount Rainer, North Cascades, and Olympic National Parks, Washington, 2008-10

Science.gov (United States)

Sheibley, Rich W.; Foreman, James R.; Moran, Patrick W.; Swarzenski, Peter W.

2012-01-01

To evaluate the potential effect from atmospheric deposition of nitrogen to high-elevation lakes, the U.S. Geological Survey partnered with the National Park Service to develop a "critical load" of nitrogen for sediment diatoms. A critical load is defined as the level of a given pollutant (in this case, nitrogen) at which detrimental effects to a target endpoint (sediment diatoms) result. Because sediment diatoms are considered one of the "first responders" to ecosystem changes from nitrogen, they are a sensitive indicator for nitrogen deposition changes in natural areas. This report presents atmospheric deposition, water quality, sediment geochronology, and sediment diatom data collected from July 2008 through August 2010 in support of this effort.

Diatom community response to climate variability over the past 37,000 years in the sub-tropics of the Southern Hemisphere

Energy Technology Data Exchange (ETDEWEB)

Hembrow, Sarah C., E-mail: sarah.hembrow@scu.edu.au [School of Environment, Science and Engineering, Southern Cross University, Lismore, NSW 2480 (Australia); Taffs, Kathryn H. [School of Environment, Science and Engineering, Southern Cross University, Lismore, NSW 2480 (Australia); Atahan, Pia [Institute for Environmental Research, Australian Nuclear Science and Technology Organisation, Kirrawee, NSW 2232 (Australia); Parr, Jeff [School of Environment, Science and Engineering, Southern Cross University, Lismore, NSW 2480 (Australia); Zawadzki, Atun; Heijnis, Henk [Institute for Environmental Research, Australian Nuclear Science and Technology Organisation, Kirrawee, NSW 2232 (Australia)

2014-01-01

Climate change is impacting global surface water resources, increasing the need for a deeper understanding of the interaction between climate and biological diversity. This is particularly the case in the Southern Hemisphere sub-tropics, where little information exists on the aquatic biota response to climate variations. Palaeolimnological techniques, in particular the use of diatoms, are well established and can significantly contribute to the understanding of climatic variability and the impacts that change in climate have on aquatic ecosystems. A sediment core from Lake McKenzie, Fraser Island (Australia), was used to investigate interactions between climate influences and aquatic ecosystems. This study utilises a combination of proxies including biological (diatom), geochemical and chronological techniques to investigate long-term aquatic changes within the perched-dune lake. A combination of {sup 210}Pb and AMS {sup 14}C dates showed that the retrieved sediment represented a history of ca. 37,000 cal. yBP. The sedimentation rate in Lake McKenzie is very low, ranging on average from 0.11 mm to 0.26 mm per year. A sediment hiatus was observed between ca. 18,300 and 14,000 cal. yBP suggesting a period of dry conditions at the site. The diatom record shows little variability over the period of record, with benthic, freshwater acidic tolerant species dominating. Relative abundance of planktonic species and geochemical results indicates a period of increased water depth and lake productivity in the early Holocene and a gradual decrease in effective precipitation throughout the Holocene. Results from this study not only support earlier work conducted on Fraser Island using pollen reconstructions but also demonstrate that diatom community diversity has been relatively consistent throughout the Holocene and late Pleistocene with only minor cyclical fluctuation evident. This record is consistent with the few other aquatic palaeoecological records from the Southern

Diatom community response to climate variability over the past 37,000 years in the sub-tropics of the Southern Hemisphere

International Nuclear Information System (INIS)

Hembrow, Sarah C.; Taffs, Kathryn H.; Atahan, Pia; Parr, Jeff; Zawadzki, Atun; Heijnis, Henk

2014-01-01

Climate change is impacting global surface water resources, increasing the need for a deeper understanding of the interaction between climate and biological diversity. This is particularly the case in the Southern Hemisphere sub-tropics, where little information exists on the aquatic biota response to climate variations. Palaeolimnological techniques, in particular the use of diatoms, are well established and can significantly contribute to the understanding of climatic variability and the impacts that change in climate have on aquatic ecosystems. A sediment core from Lake McKenzie, Fraser Island (Australia), was used to investigate interactions between climate influences and aquatic ecosystems. This study utilises a combination of proxies including biological (diatom), geochemical and chronological techniques to investigate long-term aquatic changes within the perched-dune lake. A combination of 210 Pb and AMS 14 C dates showed that the retrieved sediment represented a history of ca. 37,000 cal. yBP. The sedimentation rate in Lake McKenzie is very low, ranging on average from 0.11 mm to 0.26 mm per year. A sediment hiatus was observed between ca. 18,300 and 14,000 cal. yBP suggesting a period of dry conditions at the site. The diatom record shows little variability over the period of record, with benthic, freshwater acidic tolerant species dominating. Relative abundance of planktonic species and geochemical results indicates a period of increased water depth and lake productivity in the early Holocene and a gradual decrease in effective precipitation throughout the Holocene. Results from this study not only support earlier work conducted on Fraser Island using pollen reconstructions but also demonstrate that diatom community diversity has been relatively consistent throughout the Holocene and late Pleistocene with only minor cyclical fluctuation evident. This record is consistent with the few other aquatic palaeoecological records from the Southern Hemisphere sub

Action Spectra of Microalgal Photosynthesis and Depth Distribution of Spectral Scalar Irradiance in a Coastal Marine Sediment of Limfjorden, Denmark

DEFF Research Database (Denmark)

PLOUG, H.; LASSEN, C.; JØRGENSEN, BB

1993-01-01

for photosynthesis and spectral scalar irradiance, E0, were measured directly in the sediment at a spatial resolution of 0.1 mm by the use of oxygen and light microsensors. The action spectrum for the diatoms was similar to the attenuation spectrum of the scalar irradiance, K0, in the diatom layer with Chl...... to calculate the spectral quality for photosynthesis of the 400-700 nm light to which the two populations were exposed. This spectral quality was compared to that of the light incident on the sediment surface. Due to preferential extinction of wavelengths, at which their photosynthetically active pigments had...... populations, and that total light intensity and the chemical microenvironment are probably more important factors....

Spatio-temporal variations in the composition of organic matter in surface sediments of a mangrove receiving shrimp farm effluents (New Caledonia)

International Nuclear Information System (INIS)

Aschenbroich, Adélaïde; Marchand, Cyril; Molnar, Nathalie; Deborde, Jonathan; Hubas, Cédric; Rybarczyk, Hervé; Meziane, Tarik

2015-01-01

In order to investigate spatio-temporal variations in the composition and origin of the benthic organic matter (OM) at the sediment surface in mangrove receiving shrimp farm effluents, fatty acid (FA) biomarkers, natural stable isotopes (δ 13 C and δ 15 N), C:N ratios and chlorophyll-a (chl-a) concentrations were determined during the active and the non-active period of the farm. Fatty acid compositions in surface sediments within the mangrove forest indicated that organic matter inputs varied along the year as a result of farm activity. Effluents were the source of fresh particulate organic matter for the mangrove, as evidenced by the unsaturated fatty acid (UFA) distribution. The anthropogenic MUFA 18:1ω9 was not only accumulated at the sediment surface in some parts of the mangrove, but was also exported to the seafront. Direct release of bacteria and enhanced in situ production of fungi, as revealed by specific FAs, stimulated mangrove litter decomposition under effluent runoff condition. Also, microalgae released from ponds contributed to maintain high benthic chl-a concentrations in mangrove sediments in winter and to a shift in microphytobenthic community assemblage. Primary production was high whether the farm released effluent or not which questioned the temporary effect of shrimp farm effluent on benthic microalgae dynamic. This study outlined that mangrove benthic organic matter was qualitatively and quantitatively affected by shrimp farm effluent release and that responses to environmental condition changes likely depended on mangrove stand characteristics. - Highlights: • Fatty acid 18:1ω9 is a relevant marker to monitor effluent pathway in the mangrove. • OM nature and distribution at sediment surface varied in relation to farm activity. • Enhancement of litter-decomposer biomass and activity stimulates litter degradation. • Diatoms dominate the microalgae community under effluent runoff conditions. • Chl-a concentrations suggest

Spatio-temporal variations in the composition of organic matter in surface sediments of a mangrove receiving shrimp farm effluents (New Caledonia)

Energy Technology Data Exchange (ETDEWEB)

Aschenbroich, Adélaïde, E-mail: adelaide.aschenbroich@univ-brest.fr [UMR BOREA 7208 CNRS/MNHN/UPMC/IRD/UCBN, Muséum National d' Histoire Naturelle, CP 53, 61 rue Buffon, 75231 Paris cedex 5 (France); Marchand, Cyril [Institut de Recherche pour le Développement (IRD), UMR 7590, UR 206, BP A5, 98848 Nouméa, New Caledonia (France); Molnar, Nathalie [UMR BOREA 7208 CNRS/MNHN/UPMC/IRD/UCBN, Muséum National d' Histoire Naturelle, CP 53, 61 rue Buffon, 75231 Paris cedex 5 (France); Institut de Recherche pour le Développement (IRD), UMR 7590, UR 206, BP A5, 98848 Nouméa, New Caledonia (France); Deborde, Jonathan [Institut de Recherche pour le Développement (IRD), UMR 7590, UR 206, BP A5, 98848 Nouméa, New Caledonia (France); Hubas, Cédric; Rybarczyk, Hervé; Meziane, Tarik [UMR BOREA 7208 CNRS/MNHN/UPMC/IRD/UCBN, Muséum National d' Histoire Naturelle, CP 53, 61 rue Buffon, 75231 Paris cedex 5 (France)

2015-04-15

In order to investigate spatio-temporal variations in the composition and origin of the benthic organic matter (OM) at the sediment surface in mangrove receiving shrimp farm effluents, fatty acid (FA) biomarkers, natural stable isotopes (δ{sup 13}C and δ{sup 15}N), C:N ratios and chlorophyll-a (chl-a) concentrations were determined during the active and the non-active period of the farm. Fatty acid compositions in surface sediments within the mangrove forest indicated that organic matter inputs varied along the year as a result of farm activity. Effluents were the source of fresh particulate organic matter for the mangrove, as evidenced by the unsaturated fatty acid (UFA) distribution. The anthropogenic MUFA 18:1ω9 was not only accumulated at the sediment surface in some parts of the mangrove, but was also exported to the seafront. Direct release of bacteria and enhanced in situ production of fungi, as revealed by specific FAs, stimulated mangrove litter decomposition under effluent runoff condition. Also, microalgae released from ponds contributed to maintain high benthic chl-a concentrations in mangrove sediments in winter and to a shift in microphytobenthic community assemblage. Primary production was high whether the farm released effluent or not which questioned the temporary effect of shrimp farm effluent on benthic microalgae dynamic. This study outlined that mangrove benthic organic matter was qualitatively and quantitatively affected by shrimp farm effluent release and that responses to environmental condition changes likely depended on mangrove stand characteristics. - Highlights: • Fatty acid 18:1ω9 is a relevant marker to monitor effluent pathway in the mangrove. • OM nature and distribution at sediment surface varied in relation to farm activity. • Enhancement of litter-decomposer biomass and activity stimulates litter degradation. • Diatoms dominate the microalgae community under effluent runoff conditions. • Chl-a concentrations suggest

Nature engineered diatom biosilica as drug delivery systems.

Science.gov (United States)

Uthappa, U T; Brahmkhatri, Varsha; Sriram, G; Jung, Ho-Young; Yu, Jingxian; Kurkuri, Nikita; Aminabhavi, Tejraj M; Altalhi, Tariq; Neelgund, Gururaj M; Kurkuri, Mahaveer D

2018-05-14

Diatoms, unicellular photosynthetic algae covered with siliceous cell wall, are also called frustule. These are the most potential naturally available materials for the development of cost-effective drug delivery systems because of their excellent biocompatibility, high surface area, low cost and ease of surface modification. Mesoporous silica materials such as MCM-41 and SBA-15 have been extensively used in drug delivery area. Their synthesis is challenging, time consuming, requires toxic chemicals and are energy intensive, making the entire process expensive and non-viable. Therefore, it is necessary to explore alternative materials. Surprisingly, nature has provided some exciting materials called diatoms; biosilica is one such a material that can be potentially used as a drug delivery vehicle. The present review focuses on different types of diatom species used in drug delivery with respect to their structural properties, morphology, purification process and surface functionalization. In this review, recent advances along with their limitations as well as the future scope to develop them as potential drug delivery vehicles are discussed. Copyright © 2018. Published by Elsevier B.V.

Aggregate Formation During the Viral Lysis of a Marine Diatom

Directory of Open Access Journals (Sweden)

Yosuke Yamada

2018-05-01

Full Text Available Recent studies have suggested that the viral lysis of microbes not only facilitates the conversion of particulate organic matter into dissolved organic matter, but also promotes the formation of organic aggregates, which enhance the export of organic carbon from the surface ocean to the deep sea. However, experimental data supporting this proposition are limited. Here, we tested the hypothesis that the viral infection of marine diatoms enhances aggregate formation. We used a model system consisting of Chaetoceros tenuissimus, a bloom-forming diatom with an approximate cell size of 3–10 μm, and a DNA virus, CtenDNAV type II, which replicates in the nucleus of C. tenuissimus. The volume of large particles (50–400 μm in equivalent spherical diameters, determined from photographic images was measured over time (up to 15 days in the diatom-alone control and a virus-added diatom culture. We also determined the concentrations of Coomassie-stainable particles (CSP, proteinaceous particles and transparent exopolymeric particles (TEP, acid-polysaccharide-rich particles with colorimetric methods. The total volume of large particles was significantly higher (5–59 fold in the virus-added diatoms than in the diatom-alone control during the period in which the viral lysis of the diatoms proceeded. One class of large particles produced in the virus-added diatoms was flake-shaped. The flakes were tightly packed and dense, and sank rapidly, possibly playing an important role in the vertical delivery of materials from the surface to the deep sea. The bulk CSP concentrations tended to be higher in the virus-added diatoms than in the diatom-alone control, whereas the reverse was true for the TEP. These results suggest that proteinaceous polymers are involved in aggregate formation. Our data support the emerging notion that the viral lysis of microbes facilitates aggregate formation and the export of organic carbon in the ocean.

Biophotonics of diatoms

DEFF Research Database (Denmark)

Gössling, Johannes Wilhelm

Diatoms are unicellular microalgae present in all aquatic environments on earth. Due to their high photosynthetic productivity and abundance, diatoms are main components of aquatic food webs and among the main contributors of global photosynthetic carbon fixation. A unique feature of diatoms...

Adsorption of asymmetric rigid rods or heteronuclear diatomic moleculeson homogeneous surfaces

Science.gov (United States)

Engl, W.; Courbin, L.; Panizza, P.

2004-10-01

We treat the adsorption on homogeneous surfaces of asymmetric rigid rods (like for instance heteronuclear diatomic molecules). We show that the n→0 vector spin formalism is well suited to describe such a problem. We establish an isomorphism between the coupling constants of the magnetic Hamiltonian and the adsorption parameters of the rigid rods. By solving this Hamiltonian within a mean-field approximation, we obtain analytical expressions for the densities of the different rod’s configurations, both isotherm and isobar adsorptions curves. The most probable configurations of the molecules (normal or parallel to the surface) which depends on temperature and energy parameters are summarized in a diagram. We derive that the variation of Qv , the heat of adsorption at constant volume, with the temperature is a direct signature of the adsorbed molecules configuration change. We show that this formalism can be generalized to more complicated problems such as for instance the adsorption of symmetric and asymmetric rigid rods mixtures in the presence or not of interactions.

Methanotrophy in surface sediments of streams

Science.gov (United States)

Bagnoud, Alexandre; Pramateftaki, Paraskevi; Peter, Hannes; Battin, Tom

2017-04-01

Because streams are often found to be supersaturated in methane (CH4), they are considered as atmospheric sources of this greenhouse gas. However, little is known about the processes driving CH4 cycling in these environments, i.e. production, consumption and fluxes. CH4 is thought to be produced in deeper anoxic sediments, before it migrates up to reach the oxic stream water, where it can be oxidized by methanotrophs. In order to gain insights into this process, we investigated 14 different streams across Switzerland. We characterized the chemistry of surface and sediment waters by measuring dissolved chemical profiles. We also sampled surface sediments and determined methanotrophic rates with laboratory incubations and Michaelis-Menten modeling. Interestingly, rates were strongly correlated with the CH4 concentrations in stream waters, rather than in sediment waters. This indicates that methantrophic populations feed on CH4 from the surface streamwater, even though CH4 concentrations are higher in the sediment waters. Methanotrophy rates were also correlated with Crenothrix counts (based on 16S rRNA sequencing), a strict methanotroph, while this latter was correlated with pmoA counts (based on quantitative PCR), a gene involved in methanotrophy. These results show that Crenothrix genera are the most active methanotrophs in surface sediments of streams, and can represent more than 2% of microbial communities. Remarkably, the dominating Crenothrix species was detected in all 14 samples. This work allows the assessment of in situ methanotrophic rates, of the environmental parameters driving this process, and of the microbial populations carrying it out, and thus brings useful insights about carbon cycling in streams.

Environmental changes induced by human activities in the Northern Curonian Lagoon (Eastern Baltic: diatoms and stable isotope data

Directory of Open Access Journals (Sweden)

Giedrė Vaikutienė

2017-05-01

Full Text Available A sediment core collected from the northwestern part of the Curonian Lagoon, which was deposited approximately during 1800-2002, was analysed for several proxy records. Changes in diatom assemblages and carbon, nitrogen and oxygen stable isotopes (δ13C, δ15N and δ18O revealed two periods, which are characterized by differences in the sedimentation rate, sediment type and trophic state of the northern part of the Curonian Lagoon. Low δ15N values in organics and prevailing fresh-brackish benthic diatoms indicate low enrichment in the shallow, freshwater lagoon during the period 1800-1955. The eutrophic conditions in this shallow lagoon are reflected by a high abundance of planktonic diatoms common in nutrient-rich basins and increased d15N values in organics of the sediments since 1955. Starting approximately in the 1960s, decreased freshwater run-off and increased brackish-water inflow into the lagoon were observed. These changes were likely caused by the construction of the hydropower station (and a reservoir near the Nemunas River and the artificial deepening of the Klaipėda Strait during 1960-1962 and later, also by the rising sea level in the SE Baltic. The changed river run-off and the artificially deepened strait significantly influenced the fresh-brackish water circulation and environmental conditions in the northern part of the Curonian Lagoon in the last decades.

Biogeochemical and microbial variation across 5500 km of Antarctic surface sediment implicates organic matter as a driver of benthic community structure

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Deric R Learman

2016-03-01

Full Text Available Western Antarctica, one of the fastest warming locations on Earth, is a unique environment that is underexplored with regards to biodiversity. Although pelagic microbial communities in the Southern Ocean and coastal Antarctic waters have been well studied, there are fewer investigations of benthic communities and most have a focused geographic range. We sampled surface sediment from 24 sites across a 5,500 km region of Western Antarctica (covering the Ross Sea to the Weddell Sea to examine relationships between microbial communities and sediment geochemistry. Sequencing of the 16S and 18S rRNA genes showed microbial communities in sediments from the Antarctic Peninsula (AP and Western Antarctica (WA, including the Ross, Amundsen, and Bellingshausen Seas, could be distinguished by correlations with organic matter concentrations and stable isotope fractionation (total organic carbon; TOC, nitrogen, and δ13C. Overall, samples from the AP were higher in nutrient content (TOC, nitrogen, and NH4+ and communities in these samples had higher relative abundances of operational taxonomic units (OTUs classified as the diatom, Chaetoceros, a marine cercozoan and four OTUs classified as Cytophaga or Flavobacteria. As these OTUs were strongly correlated with TOC, the data suggests the diatoms could be a source of organic matter and the Bacteroidetes and cercozoan are grazers that consume the organic matter. Additionally, samples from WA have lower nutrients and were dominated by Thaumarchaeota, which could be related to their known ability to thrive as lithotrophs. This study documents the largest analysis of benthic microbial communities to date in the Southern Ocean, representing almost half the continental shoreline of Antarctica, and documents trophic interactions and coupling of pelagic and benthic communities. Our results indicate potential modifications in carbon sequestration processes related to change in community composition, identifying a

Sediment Transport Model for a Surface Irrigation System

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Damodhara R. Mailapalli

2013-01-01

Full Text Available Controlling irrigation-induced soil erosion is one of the important issues of irrigation management and surface water impairment. Irrigation models are useful in managing the irrigation and the associated ill effects on agricultural environment. In this paper, a physically based surface irrigation model was developed to predict sediment transport in irrigated furrows by integrating an irrigation hydraulic model with a quasi-steady state sediment transport model to predict sediment load in furrow irrigation. The irrigation hydraulic model simulates flow in a furrow irrigation system using the analytically solved zero-inertial overland flow equations and 1D-Green-Ampt, 2D-Fok, and Kostiakov-Lewis infiltration equations. Performance of the sediment transport model was evaluated for bare and cropped furrow fields. The results indicated that the sediment transport model can predict the initial sediment rate adequately, but the simulated sediment rate was less accurate for the later part of the irrigation event. Sensitivity analysis of the parameters of the sediment module showed that the soil erodibility coefficient was the most influential parameter for determining sediment load in furrow irrigation. The developed modeling tool can be used as a water management tool for mitigating sediment loss from the surface irrigated fields.

Diatoms - nature materials with great potential for bioapplications

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Medarević Đorđe P.

2016-01-01

Full Text Available Diatoms are widespread unicellular photosynthetic algae that produce unique highly ordered siliceous cell wall, called frustule. Micro- to nanoporous structure with high surface area that can be easily modified, high mechanical resistance, unique optical features (light focusing and luminescence and biocompatibility make diatom frustule as a suitable raw material for the development of devices such as bio- and gas sensors, microfluidic particle sorting devices, supercapacitors, batteries, solar cells, electroluminescent devices and drug delivery systems. Their wide availability in the form of fossil remains (diatomite or diatomaceous earth as well as easy cultivation in the artificial conditions further supports use of diatoms in many different fields of application. This review focused on the recent achievements in the diatom bioapplications such as drug delivery, biomolecules immobilization, bio- and gas sensing, since great progress was made in this field over the last several years.

A diatom record of recent environmental change in Lake Duluti, northern Tanzania

DEFF Research Database (Denmark)

Öberg, Helena; Andersen, Thorbjørn Joest; Westerberg, Lars-Ove

2012-01-01

Lake Duluti is a small, topographically closed crater lake located on the flanks of Mt Meru, northern Tanzania. Analyses of diatoms in three short sediment cores and four modern samples from Lake Duluti were used to infer past environmental changes. 210Pb and 137Cs activity profiles combined...

Diatoms as Proxies for Abrupt Events in the Hudson River Estuary

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Skorski, W.; Abbott, D. H.; Recasens, C.; Breger, D. L.

2014-12-01

The Hudson River estuary has been subject to many abrupt events throughout its history including hurricanes, droughts and pluvials. Hurricanes in particular are rare, discrete events that if fingerprinted can be used to develop better age models for Hudson River sediments. Proxies use observed physical characteristics or biological assemblages (e.g. diatom and foraminiferal assemblages) as tools to reconstruct past conditions prior to the modern instrumental record. Using a sediment core taken from the Hudson River (CDO2-29A), in New York City, drought and pluvial layers were selected based on Cs-137 dating while hurricane layers were determined from occurrences of tropical to subtropical foraminifera. Contrary to previous studies (Weaver, 1970, Weiss et al, 1978), more than sixty different diatom species have been identified using a scanning electron microscope (SEM). Cosmopolitan, hurricane and drought assemblages have begun to be identified after observing multiple layers (Table 1). Tropical foraminifera dominated by Globigerinoides ruber pink were also found in a hurricane layer that we infer was deposited during Hurricane Belle in 1976. More diatom abundance analyses and cataloged SEM pictures will provide further insight into these proxies. Table 1 Diatom Genera and Species Environment Clarification Cyclotella caspia Planktonic, marine-brackish Cosmopolitan Karayevia clevei Freshwater Cosmopolitan Melosira sp Planktonic, marine Cosmopolitan Thalassiosira sp Marine, brackish Cosmopolitan Staurosirella leptostauron Benthic, freshwater Cosmopolitan Actinoptychus senarius Planktonic or benthic, freshwater to brackish Hurricane and pluvial layers Amphora aff. sp Benthic, marine or freshwater Hurricane layers only Nitzschia sp Benthic, marine or freshwater Hurricane layers only Gomphonema sp Freshwater Hurricane layers only Surirella sp Marine-brackish Drought layer only Triceratium sp Marine Drought layer only Other Genera and species Environment Clarification

Circular random motion in diatom gliding under isotropic conditions

International Nuclear Information System (INIS)

Gutiérrez-Medina, Braulio; Maldonado, Ana Iris Peña; Guerra, Andrés Jiménez; Rubio, Yadiralia Covarrubias; Meza, Jessica Viridiana García

2014-01-01

How cells migrate has been investigated primarily for the case of trajectories composed by joined straight segments. In contrast, little is known when cellular motion follows intrinsically curved paths. Here, we use time-lapse optical microscopy and automated trajectory tracking to investigate how individual cells of the diatom Nitzschia communis glide across surfaces under isotropic environmental conditions. We find a distinct kind of random motion, where trajectories are formed by circular arcs traveled at constant speed, alternated with random stoppages, direction reversals and changes in the orientation of the arcs. Analysis of experimental and computer-simulated trajectories show that the circular random motion of diatom gliding is not optimized for long-distance travel but rather for recurrent coverage of limited surface area. These results suggest that one main biological role for this type of diatom motility is to efficiently build the foundation of algal biofilms. (paper)

Responses of aquatic organisms to metal pollution in a lowland river in Flanders: A comparison of diatoms and macroinvertebrates

International Nuclear Information System (INIS)

Jonge, Maarten de; Vijver, Bart van de; Blust, Ronny; Bervoets, Lieven

2008-01-01

The role of macroinvertebrates and diatoms as indicator for metal pollution was investigated by assessing both biota along a metal gradient in the Belgian river the Dommel. Macroinvertebrates and diatoms were sampled in summer and winter and physical-chemical characteristics of the water were measured at four different sample periods and related to sediment characteristics. Although metal concentrations, except cadmium, in the water nowhere exceeded water quality standards, high metal concentrations were measured in the sediment, indicating historical contamination of the Dommel. At the sites that were situated downstream of the pollution source, high levels of conductivity and chloride were measured in the water. Redundancy Analysis (RDA) indicated pH, phosphate and zinc as the significant environmental variables explaining each respectively 7.7%, 11.6% and 22.6% of the macroinvertebrate community composition. Two clusters could be separated, with Gammarus pulex, Leptocerus interruptus, Baetis rhodani and Cloeon dipterum associated with low zinc concentrations and Tubificidae, Asellus aquaticus, Erpobdella sp. and Chironomus thummi-plumosus associated with higher zinc concentrations. Ammonium (10.6%), conductivity (16.5%), chloride (11.4%) and zinc (5.9%) turned out to be significant variables explaining the diatom community structure. Based on physical-chemical differences and species composition, three different groups could be separated. With this Tabellaria flocculosa and Fragilaria capucina var. rumpens were associated with low metal concentrations, Gomphonema parvulum and Nitzschia palea with elevated concentrations and Eolimna minima and Sellaphora seminulum with high zinc concentrations. In conclusion, the diatom community best reflected the metal gradient. With regard to water quality indices, those based on macroinvertebrates best followed the metal pollution gradient and were most strongly correlated with physical-chemical variables of water and

Responses of aquatic organisms to metal pollution in a lowland river in Flanders: A comparison of diatoms and macroinvertebrates

Energy Technology Data Exchange (ETDEWEB)

Jonge, Maarten de [Department of Biology, Ecophysiology, Biochemistry and Toxicology Group, University of Antwerp, Groenenborgerlaan 171, B-2020 Antwerp (Belgium)], E-mail: maarten.dejonge@ua.ac.be; Vijver, Bart van de [Department of Bryophytes and Thallophytes, National Botanic Garden of Belgium, Domein van Bouchout, 1860 Meise (Belgium); Blust, Ronny; Bervoets, Lieven [Department of Biology, Ecophysiology, Biochemistry and Toxicology Group, University of Antwerp, Groenenborgerlaan 171, B-2020 Antwerp (Belgium)

2008-12-15

The role of macroinvertebrates and diatoms as indicator for metal pollution was investigated by assessing both biota along a metal gradient in the Belgian river the Dommel. Macroinvertebrates and diatoms were sampled in summer and winter and physical-chemical characteristics of the water were measured at four different sample periods and related to sediment characteristics. Although metal concentrations, except cadmium, in the water nowhere exceeded water quality standards, high metal concentrations were measured in the sediment, indicating historical contamination of the Dommel. At the sites that were situated downstream of the pollution source, high levels of conductivity and chloride were measured in the water. Redundancy Analysis (RDA) indicated pH, phosphate and zinc as the significant environmental variables explaining each respectively 7.7%, 11.6% and 22.6% of the macroinvertebrate community composition. Two clusters could be separated, with Gammarus pulex, Leptocerus interruptus, Baetis rhodani and Cloeon dipterum associated with low zinc concentrations and Tubificidae, Asellus aquaticus, Erpobdella sp. and Chironomus thummi-plumosus associated with higher zinc concentrations. Ammonium (10.6%), conductivity (16.5%), chloride (11.4%) and zinc (5.9%) turned out to be significant variables explaining the diatom community structure. Based on physical-chemical differences and species composition, three different groups could be separated. With this Tabellaria flocculosa and Fragilaria capucina var. rumpens were associated with low metal concentrations, Gomphonema parvulum and Nitzschia palea with elevated concentrations and Eolimna minima and Sellaphora seminulum with high zinc concentrations. In conclusion, the diatom community best reflected the metal gradient. With regard to water quality indices, those based on macroinvertebrates best followed the metal pollution gradient and were most strongly correlated with physical-chemical variables of water and

Contribution of phytoplankton and benthic microalgae to inner shelf sediments of the north-central Gulf of Mexico

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Grippo, M. A.; Fleeger, J. W.; Rabalais, N. N.; Condrey, R.; Carman, K. R.

2010-03-01

Marine sediment may contain both settled phytoplankton and benthic microalgae (BMA). In river-dominated, shallow continental shelf systems, spatial, and temporal heterogeneity in sediment type and water-column characteristics (e.g., turbidity and primary productivity) may promote spatial variation in the relative contribution of these two sources to the sediment organic matter pool available to benthic consumers. Here we use photosynthetic pigment analysis and microscopic examination of sediment microalgae to investigate how the biomass, composition, and degradation state of sediment-associated microalgae vary along the Louisiana (USA) inner shelf, a region strongly influenced by the Mississippi River. Three sandy shoals and surrounding muddy sediments with depths ranging from 4 to 20 m were sampled in April, August, and October 2007. Pigment composition suggested that sediment microalgae were primarily diatoms at all locations. We found no significant differences in sediment chlorophyll a concentrations (8-77 mg m -2) at the shoal and off-shoal stations. Epipelic pennate diatoms (considered indicative of BMA) made up a significantly greater proportion of sediment diatoms at sandy (50-98%) compared to more silty off-shoal stations (16-56%). The percentage of centric diatoms (indicators of settled phytoplankton) in the sediment was highest in August. Sediment total pheopigment concentrations on sandy stations (40 mg m -2), suggesting differences in sediment microalgal degradation state. These observations suggest that BMA predominate in shallow sandy sediments and that phytodetritus predominates at muddy stations. Our results also suggest that the relative proportion of phytodetritus in the benthos was highest where phytoplankton biomass in the overlying water was greatest, independent of sediment type. The high biomass of BMA found on shoals suggests that benthic primary production on sandy sediments represents a potentially significant local source of sediment

A retrospective analysis of trace metals, C, N and diatom remnants in sediments from the Mississippi River delta shelf

International Nuclear Information System (INIS)

Turner, R. Eugene; Milan, C.S.; Rabalais, N.N.

2004-01-01

) zone that consistently covers much of this continental shelf's bottom layer in summer is attributed to nitrate loading from the Mississippi River. Increased nitrogen loading from river to shelf stimulates diatom production whose loading to the bottom layer and subsequent metabolism results in oxygen being depleted faster than it is replaced. In the last two decades there has been an increased accumulation of organic matter in sediments near the mouth of the Mississippi River. This coupling between river water, surface water and bottom water has recently expanded westward of the Atchafalaya River delta towards the Texas coast. The accumulation of biogenic silica (BSi) and carbon in dated sediments is coincidental with variations in riverine nitrate flux, but not with either V or Ba accumulation rates. These analyses indicate that both OCS development and riverine sources exert strong influences on the sediment constituents offshore, and that these influences may be independent of one another

The biogeochemistry of carbon in continental slope sediments: The North Carolina margin

Energy Technology Data Exchange (ETDEWEB)

Blair, N.; Levin, L.; DeMaster, D.; Plaia, G.; Martin, C.; Fornes, W.; Thomas, C.; Pope, R.

1999-12-01

The responses of the continental slope benthos to organic detritus deposition were studied with a multiple trace approach. Study sites were offshore of Cape Fear (I) and Cape Hatteras (III), N.C. (both 850 m water depth) and were characterized by different organic C deposition rates, macrofaunal densities (III>I in both cases) and taxa. Natural abundances of {sup 13}C and {sup 12}C in particulate organic carbon (POC), dissolved inorganic carbon (DIC) and macrofauna indicate that the reactive organic detritus is marine in origin. Natural abundance levels of {sup 14}C and uptake of {sup 13}C-labeled diatoms by benthic animals indicate that they incorporate a relatively young component of carbon into their biomass. {sup 13}C-labeled diatoms (Thalassiorsira pseudonana) tagged with {sup 210}Pb, slope sediment tagged with {sup 113}Sn and {sup 228}Th-labeled glass beads were emplaced in plots on the seafloor at both locations and the plots were sampled after 30 min., 1-1.5 d and 14 mo. At Site I, tracer diatom was intercepted at the surface primarily by protozoans and surface-feeding annelids. Little of the diatom C penetrated below 2 cm even after 14 months. Oxidation of organic carbon appeared to be largely aerobic. At Site III, annelids were primarily responsible for the initial uptake of tracer. On the time scale of days, diatom C was transported to a depth of 12 cm and was found in animals collected between 5-10 cm. The hoeing of tracer from the surface by the maldanid Praxillela sp. may have been responsible for some of the rapid nonlocal transport. Oxidation of the diatom organic carbon was evident to at least 10 cm depth. Anaerobic breakdown of organic matter is more important at Site III. Horizontal transport, which was probably biologically mediated, was an order of magnitude more rapid than vertical displacement over a year time scale. If the horizontal transport was associated with biochemical transformations of the organic matter, it may represent an

Nitrogen deposition effects on diatom communities in lakes from three National Parks in Washington State

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Sheibley, Richard W.; Enache, Mihaela; Swarzenski, Peter W.; Moran, Patrick W.; Foreman, James R.

2014-01-01

The goal of this study was to document if lakes in National Parks in Washington have exceeded critical levels of nitrogen (N) deposition, as observed in other Western States. We measured atmospheric N deposition, lake water quality, and sediment diatoms at our study lakes. Water chemistry showed that our study lakes were ultra-oligotrophic with ammonia and nitrate concentrations often at or below detection limits with low specific conductance (−1 year−1 and were variable both within and across the parks. Diatom assemblages in a single sediment core from Hoh Lake (Olympic National Park) displayed a shift to increased relative abundances of Asterionella formosa and Fragilaria tenera beginning in the 1969–1975 timeframe, whereas these species were not found at the remaining (nine) sites. These diatom species are known to be indicative of N enrichment and were used to determine an empirical critical load of N deposition, or threshold level, where changes in diatom communities were observed at Hoh Lake. However, N deposition at the remaining nine lakes does not seem to exceed a critical load at this time. At Milk Lake, also in Olympic National Park, there was some evidence that climate change might be altering diatom communities, but more research is needed to confirm this. We used modeled precipitation for Hoh Lake and annual inorganic N concentrations from a nearby National Atmospheric Deposition Program station, to calculate elevation-corrected N deposition for 1980–2009 at Hoh Lake. An exponential fit to this data was hindcasted to the 1969–1975 time period, and we estimate a critical load of 1.0 to 1.2 kg N ha−1 year−1 for wet deposition for this lake.

Assessing the effects of climate and volcanism on diatom and chironomid assemblages in an Andean lake near Quito, Ecuador

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Neal Michelutti

2015-12-01

Full Text Available The tropical Andes are undergoing climate changes that rival those occurring anywhere else on the planet, and are likely to have profound consequences for ecosystems. Paleolimnological investigations of remote mountain lakes can provide details of past environmental change, especially where monitoring data are absent. Here, we reconstruct fossil diatom and chironomid communities spanning the last several hundred years from an Andean lake located in an ecological reserve near Quito, Ecuador. Both diatoms and chironomids recorded assemblage shifts reflective of changing climate conditions. The diatoms are likely responding primarily to temperature-related limnological changes, recording an increase in the number of planktonic taxa in the most recent sediments. This change is consistent with warmer conditions that result in enhanced periods of thermal stratification, allowing planktonic species to proliferate. The chironomids appear to respond mainly to a change in precipitation regime, recording a greater number of terrestrial and semi-terrestrial taxa that have been transported to the lake. A thick tephra deposit at the base of the sediment core affected both diatom and chironomid assemblages. The diatoms registered a change in species composition highlighting the ability of certain taxa to rapidly colonize new environments. In contrast, the chironomids showed a marked drop in abundance immediately following the tephra, but no change in species composition. In both cases the ecological response was short-lived, illustrating the resiliency of the lake to return to baseline conditions following volcanic inputs.

A Southern Ocean Diatom Record of the Mid-Pleistocene Transition from the Amundsen Sea, Antarctica

Science.gov (United States)

Konfirst, M. A.; Scherer, R. P.

2010-12-01

In 2001 an 18.49m core was collected aboard Polarstern (cruise ANT-XVIII/5a) from the upper continental rise offshore from Pine Island Bay in the Amundsen Sea (69°19’S, 108°27’W) at 4014 m water depth. This location is important because it is one of the three main discharge locations for the WAIS and it is expected that IRD from melting icebergs would be concentrated in this region. Hillenbrand et al. (2009) collected data on magnetic susceptibility, wet bulk density, water content, biogenic opal, Ba/Al ratios (as a proxy for paleoproductivity), clay mineral content, and sand/ gravel fractions. To complement this data set, a high-resolution record (sample spacing 10cm) of the siliceous microfossil assemblages (diatoms and silicoflagellates) present in the core has been generated. Data include both relative abundance of individual diatom species and genera and absolute diatom abundance. Species composition in the upper 1004 cm is dominated by Fragilariopsis kerguelensis, which consistently composes 80-90% of the assemblage. Below 1004 cm the assemblage is more diverse, with Actinocyclus ingens, Thalassiothrix antarctica and F. kerguelensis consistently comprising the bulk of the assemblage. Additionally, the occurrence of A. ingens, Thalassiosira elliptipora and T. fasciculata can be used to confirm and further refine the age model established by Hillenbrand et al. (2009). Absolute abundance of diatom frustules varies from samples completely barren fossils to those with concentrations >4 x 107 valves/ g sediment and follows the biogenic opal measurements of Hillenbrand et al. (2009). A clear relationship between diatom abundance and glacial/interglacial variability is apparent in the upper 1004 cm and has been documented in the geochemical measurements of Hillenbrand et al. (2009). Significantly lower absolute abundance is observed below ~1004 cm; however, intervals with samples barren of fossils continue to alternate with those containing low concentrations

Occurrence of Priming in the Degradation of Lignocellulose in Marine Sediments.

Science.gov (United States)

Gontikaki, Evangelia; Thornton, Barry; Cornulier, Thomas; Witte, Ursula

2015-01-01

More than 50% of terrestrially-derived organic carbon (terrOC) flux from the continents to the ocean is remineralised in the coastal zone despite its perceived high refractivity. The efficient degradation of terrOC in the marine environment could be fuelled by labile marine-derived material, a phenomenon known as "priming effect", but experimental data to confirm this mechanism are lacking. We tested this hypothesis by treating coastal sediments with 13C-lignocellulose, as a proxy for terrOC, with and without addition of unlabelled diatom detritus that served as the priming inducer. The occurrence of priming was assessed by the difference in lignocellulose mineralisation between diatom-amended treatments and controls in aerobic sediment slurries. Priming of lignocellulose degradation was observed only at the initial stages of the experiment (day 7) and coincided with overall high microbial activity as exemplified by total CO2 production. Lignocellulose mineralisation did not differ consistently between diatom treatments and control for the remaining experimental time (days 14-28). Based on this pattern, we hypothesize that the faster initiation of lignocellulose mineralisation in diatom-amended treatments is attributed to the decomposition of accessible polysaccharide components within the lignocellulose complex by activated diatom degraders. The fact that diatom-degraders contributed to lignocellulose degradation was also supported by the different patterns in 13C-enrichment of phospholipid fatty acids between treatments. Although we did not observe differences between treatments in the total quantity of respired lignocellulose at the end of the experiment, differences in timing could be important in natural ecosystems where the amount of time that a certain compound is subject to aerobic degradation before burial to deeper anoxic sediments may be limited.

HEAVY METALS IN SURFACE MUD SEDIMENT IN EKATERINBURG (RUSSIA

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A. A. Seleznev

2018-03-01

Full Text Available Problem Statement. Now the most part of the world’s population lives in cities, thus, it is relevant the search for universal, low-cost and express methods for environmental geochemical investigations of an urban environment. The objective of the study is the assessment of content and properties of surface mud sediment at the urban territory (on the example of Ekaterinburg, Russia. Methods of the study. The 30 samples of surface mud sediment, soils and ground were collected in the residential area of the city. Particle size composition, measurements of heavy metals content, correlation analysis was conducted for the samples. Results. Surface mud sediment at the residential territories can be classified as surface facie of the recent anthropogenic sediment. Samples of the environmental compartments were collected at the territories of six blocks of houses of various years of construction, located in various parts of the city and at the various geological units. Five samples were collected in each block: 3 samples within the block and 2 samples – outside. The content of Pb, Zn, Cu, Ni, Co, and Mn was measured in particle size fractions of the samples. Particle size composition of the surface mud sediment in Ekaterinburg is similar to the particle size composition of the grounds formed on the sediments of Holocene age in Urals region. The positive statistically significant correlation was found between the couples of metals: Zn and Pb, Zn and Cu, Co and Ni. The distribution of concentrations of Pb, Zn and Cu over particle size fractions of surface mud sediment is heterogeneous. Pollution of the ground and soil in urban areas is due to the transition of heavy metals with particles of dust and fine sand. Typical geochemical association of metals for particle size fraction of surface mud sediment 0.002–0.01 mm – Mn-Zn-Ni-Cu-Pb-Co, that is similar to the association for sediments of surface puddles in local zones of relief, soils and bottom

Review--Interactions between diatoms and stainless steel: focus on biofouling and biocorrosion.

Science.gov (United States)

Landoulsi, J; Cooksey, K E; Dupres, V

2011-11-01

There is a considerable body of information regarding bacterially enhanced corrosion, however, this review focuses on diatoms (unicellular algae) whose contribution to biocorrosion is less well studied. The reasons why diatoms have been neglected in studies of biocorrosion in natural waters are discussed and the question whether diatoms should be considered as inert with respect of electrochemical processes is considered. A particular focus is given to the case of stainless steels (SS), which are widely used in variety of applications in natural waters. Basic information on the cell biology of diatoms is included in the review, particularly with respect to their ability to 'sense' and adhere to surfaces. Investigations at the nanoscale are reviewed as these studies provide information about the behavior of cells at interfaces. Recent advances include the use of atomic force microscopy (AFM), although only a few studies have been applied to diatoms. Regarding the electrochemical behavior of SS, the mechanisms by which diatoms influence the potential ennoblement process is discussed. Such studies reveal the association of diatoms, in addition to bacteria, with biocorrosion processes.

Influence of diatom diversity on the ocean biological carbon pump

Science.gov (United States)

Tréguer, Paul; Bowler, Chris; Moriceau, Brivaela; Dutkiewicz, Stephanie; Gehlen, Marion; Aumont, Olivier; Bittner, Lucie; Dugdale, Richard; Finkel, Zoe; Iudicone, Daniele; Jahn, Oliver; Guidi, Lionel; Lasbleiz, Marine; Leblanc, Karine; Levy, Marina; Pondaven, Philippe

2018-01-01

Diatoms sustain the marine food web and contribute to the export of carbon from the surface ocean to depth. They account for about 40% of marine primary productivity and particulate carbon exported to depth as part of the biological pump. Diatoms have long been known to be abundant in turbulent, nutrient-rich waters, but observations and simulations indicate that they are dominant also in meso- and submesoscale structures such as fronts and filaments, and in the deep chlorophyll maximum. Diatoms vary widely in size, morphology and elemental composition, all of which control the quality, quantity and sinking speed of biogenic matter to depth. In particular, their silica shells provide ballast to marine snow and faecal pellets, and can help transport carbon to both the mesopelagic layer and deep ocean. Herein we show that the extent to which diatoms contribute to the export of carbon varies by diatom type, with carbon transfer modulated by the Si/C ratio of diatom cells, the thickness of the shells and their life strategies; for instance, the tendency to form aggregates or resting spores. Model simulations project a decline in the contribution of diatoms to primary production everywhere outside of the Southern Ocean. We argue that we need to understand changes in diatom diversity, life cycle and plankton interactions in a warmer and more acidic ocean in much more detail to fully assess any changes in their contribution to the biological pump.

Simulating Sediment Sorting of Streambed Surfaces - It's the Supply, Stupid

Science.gov (United States)

Wilcock, P. R.

2014-12-01

The grain size of the streambed surface is an integral part of the transport system because it represents the grains immediately available for transport. If the rate and size of grains entrained from the bed surface differ from that delivered to the bed surface, the bed surface grain size will change. Although this balance is intuitively clear, its implications can surprise. The relative mobility of different sizes in a mixture change as transport rates increase. At small transport rates, smaller sizes are more mobile. As transport rate increases, the transport grain size approaches that of the bed. This presents a dilemma when using flumes to simulate surface sorting and transport. When sediment is fed into a flume, the same sediment is typically used regardless of feed rate. The transport grain size remains constant at all rates, which does not match the pattern observed in the field. This operational constraint means that sediment supply is coarser than transport capacity in feed flumes, increasingly so as transport rates diminish. This imbalance drives a coarsening of the stream bed as less mobile coarse grains concentrate on the surface as the system approaches steady-state. If sediment is recirculated in a flume, sediment supply and entrainment are perfectly matched. Surface coarsening is not imposed, but does occur via kinematic sieving. The coarsening of the transport (and supply) accommodates the rate-dependent change in mobility such that the bed surface grain size does not change with transport rate. Streambed armoring depends on both the rate and grain size of sediment supply - their implications do not seem to be fully appreciated. A coarsened bed surface does not indicate sorting of the bed surface during waning flows - it can persist with active sediment supply and transport. Neither sediment feed nor sediment recirculating flumes accurately mimic natural conditions but instead represent end members that bracket the dynamics of natural streams

Diatom-Specific Oligosaccharide and Polysaccharide Structures Help to Unravel Biosynthetic Capabilities in Diatoms

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Bruno Gügi

2015-09-01

Full Text Available Diatoms are marine organisms that represent one of the most important sources of biomass in the ocean, accounting for about 40% of marine primary production, and in the biosphere, contributing up to 20% of global CO2 fixation. There has been a recent surge in developing the use of diatoms as a source of bioactive compounds in the food and cosmetic industries. In addition, the potential of diatoms such as Phaeodactylum tricornutum as cell factories for the production of biopharmaceuticals is currently under evaluation. These biotechnological applications require a comprehensive understanding of the sugar biosynthesis pathways that operate in diatoms. Here, we review diatom glycan and polysaccharide structures, thus revealing their sugar biosynthesis capabilities.

High-resolution paleoclimatology of the Santa Barbara Basin during the Medieval Climate Anomaly and early Little Ice Age based on diatom and silicoflagellate assemblages in Kasten core SPR0901-02KC

Science.gov (United States)

Barron, John A.; Bukry, David B.; Hendy, Ingrid L.

2015-01-01

Diatom and silicoflagellate assemblages documented in a high-resolution time series spanning 800 to 1600 AD in varved sediment recovered in Kasten core SPR0901-02KC (34°16.845’ N, 120°02.332’ W, water depth 588 m) from the Santa Barbara Basin (SBB) reveal that SBB surface water conditions during the Medieval Climate Anomaly (MCA) and the early part of the Little Ice Age (LIA) were not extreme by modern standards, mostly falling within one standard deviation of mean conditions during the pre anthropogenic interval of 1748 to 1900. No clear differences between the character of MCA and the early LIA conditions are apparent. During intervals of extreme droughts identified by terrigenous proxy scanning XRF analyses, diatom and silicoflagellate proxies for coastal upwelling typically exceed one standard deviation above mean values for 1748-1900, supporting the hypothesis that droughts in southern California are associated with cooler (or La Niña-like) sea surface temperatures (SSTs). Increased percentages of diatoms transported downslope generally coincide with intervals of increased siliciclastic flux to the SBB identified by scanning XRF analyses. Diatom assemblages suggest only two intervals of the MCA (at ~897 to 922 and ~1151 to 1167) when proxy SSTs exceeded one standard deviation above mean values for 1748 to 1900. Conversely, silicoflagellates imply extreme warm water events only at ~830 to 860 (early MCA) and ~1360 to 1370 (early LIA) that are not supported by the diatom data. Silicoflagellates appear to be more suitable for characterizing average climate during the 5 to 11 year-long sample intervals studied in the SPR0901-02KC core than diatoms, probably because diatom relative abundances may be dominated by seasonal blooms of a particular year.

The influence of fish feed pellets on the stability of seabed sediment: A laboratory flume investigation

Science.gov (United States)

Neumeier, Urs; Friend, Patrick L.; Gangelhof, Uffe; Lunding, Jens; Lundkvist, Morten; Bergamasco, Alessandro; Amos, Carl L.; Flindt, Mogens

2007-11-01

Superfluous fish food settling below fish farms can have a negative impact on the seabed. To aid in the assessment of this impact a series of flume experiments, designed to mimic seabed conditions below a fish farm, was conducted with the aim of examining the effects of fish pellets on the stability of fine sediments. Artificial beds, with varying quantities of fish pellets incorporated both within the sediment matrix and lying on the sediment surface, were allowed to consolidate for different periods of time ranging from 1 to 10 days, and then subjected to erosion experiments. In flume experiments containing fish pellets, a bacterial biofilm developed at the sediment-water interface after a few days. In the control experiments (no fish pellets), a diatom biofilm caused extensive stabilisation of the surface sediment. The erosion experiments showed that the addition of fish pellets reduced the surface erosion threshold by more than 50%. The stability decrease was more pronounced in the experiments with greater amounts of pellets. Evidence of drag reduction due to high suspended sediment concentration was also observed. This phenomenon is discussed and a correction formula is proposed for the effective shear stress experienced by the bed.

Drivers of Change in a 7300-Year Holocene Diatom Record from the Hemi-Boreal Region of Ontario, Canada.

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Kristen K Beck

Full Text Available A Holocene lake sediment record spanning the past 7300 years from Wishart Lake in the Turkey Lakes Watershed in the Hemi-Boreal of central Ontario, Canada, was used to evaluate the potential drivers of long-term change in diatom assemblages at this site. An analysis of diatom assemblages found that benthic and epiphytic taxa dominated the mid-Holocene (7300-4000 cal yr BP, indicating shallow, oligotrophic, circum-neutral conditions, with macrophytes present. A significant shift in diatom assemblages towards more planktonic species (mainly Cyclotella sensu lato, but also several species of Aulacoseira, and Tabellaria flocculosa occurred ~4000 cal yr BP. This change likely reflects an increase in lake level, coincident with the onset of a more strongly positive moisture balance following the drier climates of the middle Holocene, established by numerous regional paleoclimate records. Pollen-inferred regional changes in vegetation around 4000 yrs BP, including an increase in Betula and other mesic taxa, may have also promoted changes in diatom assemblages through watershed processes mediated by the chemistry of runoff. A more recent significant change in limnological conditions is marked by further increases in Cyclotella sensu lato beginning in the late 19th century, synchronous with the Ambrosia pollen rise and increases in sediment bulk density, signaling regional and local land clearance at the time of Euro-Canadian settlement (1880 AD. In contrast to the mid-Holocene increase in planktonic diatoms, the modern increase in Cyclotella sensu lato likely indicates a response to land use and vegetation change, and erosion from the watershed, rather than a further increase in water level. The results from Wishart Lake illustrate the close connection between paleoclimate change, regional vegetation, watershed processes, and diatom assemblages and also provides insight into the controls on abundance of Cyclotella sensu lato, a diatom taxonomic group

Tracing carbon flow from microphytobenthos to major bacterial groups in an intertidal marine sediment by using an in situ 13C pulse-chase method

OpenAIRE

Miyatake, T.; Moerdijk-Poortvliet, T.C.W.; Stal, L.J.; Boschker, H.T.S.

2014-01-01

Carbon flow from benthic diatoms to heterotrophic bacterial was traced in an intertidal sediment for 5 consecutive days. 13C-labeled bicarbonate was sprayed onto the sediment surface during low tide and 13C-label incorporation in major carbon pools, intermediate metabolites, and biomarkers were monitored. Phospholipid-derived fatty acid (PLFA) and ribosomal ribonucleic acid (rRNA) were used to identify the responsible members of the microbial community at class and family phylogenetic resolut...

Towards a representative periphytic diatom sample

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2007-01-01

Full Text Available The need to acquire a representative periphytic diatom sample for river water quality monitoring has been recognised in the development of existing diatom indices, important in the development and employment of diatom monitoring tools for the Water Framework Directive. In this study, a nested design with replication is employed to investigate the magnitude of variation in diatom biomass, composition and Trophic Diatom Index at varying scales within a small chalk river. The study shows that the use of artificial substrates may not result in diatom communities that are typical of the surrounding natural substrates. Periphytic diatom biomass and composition varies between artificial and natural substrates, riffles and glides and between two stretches of the river channel. The study also highlights the existence of high variation in diatom frustule frequency and biovolume at the individual replicate scale which may have implications for the use of diatoms in routine monitoring.

Using diatom assemblages and sulphur in sediments to uncover the effects of historical mining on Lake Arnoux (Quebec, Canada: A retrospective of economic benefits versus environmental debt

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Paul Brian Hamilton

2015-09-01

Full Text Available Monitoring changes in environmental conditions is increasingly important as the Canadian economic infrastructure ramps up exploration and mining development in the more inaccessible northern regions of Canada. Governments are concurrently assessing effects from past mining activities and absorbing the economic cost to society with on-going remediation and monitoring initiatives. The abandoned Aldermac mine in northwestern Quebec, mined from 1932–1943, is an excellent case study for assessing the state of environmental and economic effects of past mining operations. A paleolimnological approach, using diatoms as environmental proxies, was used to evaluate the spatial and temporal impacts on aquatic receiving environments. Based on the inferences drawn from diatom assemblages in Lake Arnoux, prior to mining activity, lake water pH was similar to that of surrounding lakes (circumneutral to weakly acidic. After mining operations terminated, changes in pH and alkalinity in Lake Arnoux coincided with distinct increases in sediment sulphur content. Across a 30- to 40-year span (circa 1940 to 1970s a significant decline in phytoplankton flora coincided with lake acidification and increased clarity of the water column. This resulted in an increase in the benthic diatom population (>90%, replacing the planktonic diatoms. Observed shifts in environmental proxies are concurrent with one, and possibly two, reported tailings pond breaches at the abandoned mine site. Adverse effects of the abandoned Aldermac mine on nearby ecosystems, combined with pressure from local citizens and environmental groups, forced responsible accountability for site restoration led by the Quebec government. Based on the historical period of economic growth, the financial benefits of the Aldermac mine were significant and justify the current pay-it-backward costs for environmental remediation. However, it has now been documented that the pay-it-backward model is not sustainable in

Sediment studies at Bikini Atoll part 2. inventories of transuranium elements in surface sediments

Energy Technology Data Exchange (ETDEWEB)

Noshkin, V.E.; Eagle, R.J.; Wong, K.M.; Robison, W.L.

1997-10-01

This is the second of three reports on Bikini sediment studies, which discusses the concentrations and inventories of {sup 241}Am and {sup 239+240}Pu in sediments from the lagoon. Surface sediment samples were collected from 87 locations over the entire lagoon at Bikini Atoll during 1979. The collections were made to map the distribution of long-lived radionuclides associated with the bottom material and to show what modifications occurred in the composition of the sediment as a result of the testing program. Present inventories for {sup 241}Am and {sup 239+240}Pu in the surface 2 cm of sediment are estimated to be 14 and 17 TBq, respectively. These values are estimated to represent only 14% of the total inventory in the sediment column. Sediment inventories of {sup 239+240}Pu and {sup 241}Am are changing only slowly with time through chemical- physical processes that continuously mobilize small amounts of the transuranics to the water column. The lowest concentrations and inventories are associated with deposits logoonward of the eastern reef.

Processing and characterization of diatom nanoparticles and microparticles as potential source of silicon for bone tissue engineering

Energy Technology Data Exchange (ETDEWEB)

Le, Thi Duy Hanh [Department of Industrial Engineering, University of Trento, Trento (Italy); BIOtech Research Center and European Institute of Excellence on Tissue Engineering and Regenerative Medicine, Trento (Italy); Bonani, Walter [Department of Industrial Engineering, University of Trento, Trento (Italy); BIOtech Research Center and European Institute of Excellence on Tissue Engineering and Regenerative Medicine, Trento (Italy); Interuniversity Consortium for Science and Technology of Materials, Trento Research Unit, Trento (Italy); Speranza, Giorgio [Center for Materials and Microsystems, PAM-SE, Fondazione Bruno Kessler, Trento (Italy); Sglavo, Vincenzo; Ceccato, Riccardo [Department of Industrial Engineering, University of Trento, Trento (Italy); Maniglio, Devid; Motta, Antonella [Department of Industrial Engineering, University of Trento, Trento (Italy); BIOtech Research Center and European Institute of Excellence on Tissue Engineering and Regenerative Medicine, Trento (Italy); Interuniversity Consortium for Science and Technology of Materials, Trento Research Unit, Trento (Italy); Migliaresi, Claudio, E-mail: claudio.migliaresi@unitn.it [Department of Industrial Engineering, University of Trento, Trento (Italy); BIOtech Research Center and European Institute of Excellence on Tissue Engineering and Regenerative Medicine, Trento (Italy); Interuniversity Consortium for Science and Technology of Materials, Trento Research Unit, Trento (Italy)

2016-02-01

Silicon plays an important role in bone formation and maintenance, improving osteoblast cell function and inducing mineralization. Often, bone deformation and long bone abnormalities have been associated with silica/silicon deficiency. Diatomite, a natural deposit of diatom skeleton, is a cheap and abundant source of biogenic silica. The aim of the present study is to validate the potential of diatom particles derived from diatom skeletons as silicon-donor materials for bone tissue engineering applications. Raw diatomite (RD) and calcined diatomite (CD) powders were purified by acid treatments, and diatom microparticles (MPs) and nanoparticles (NPs) were produced by fragmentation of purified diatoms under alkaline conditions. The influence of processing on the surface chemical composition of purified diatomites was evaluated by X-ray photoelectron spectroscopy (XPS). Diatoms NPs were also characterized in terms of morphology and size distribution by transmission electron microscopy (TEM) and Dynamic light scattering (DLS), while diatom MPs morphology was analyzed by scanning electron microscopy (SEM). Surface area and microporosity of the diatom particles were evaluated by nitrogen physisorption methods. Release of silicon ions from diatom-derived particles was demonstrated using inductively coupled plasma optical emission spectrometry (ICP/OES); furthermore, silicon release kinetic was found to be influenced by diatomite purification method and particle size. Diatom-derived microparticles (MPs) and nanoparticles (NPs) showed limited or no cytotoxic effect in vitro depending on the administration conditions. - Highlights: • Diatomite is a natural source of silica and has a potential as silicon-donor for bone regenerative applications. • Diatom particles derived from purified diatom skeletons were prepared by fragmentation under extreme alkaline condition. • Dissolution of diatom particles derived from diatom skeletons in DI water depend on purification method

Environmental investigations using diatom microfossils

Science.gov (United States)

Smith, Kathryn E.L.; Flocks, James G.

2010-01-01

Diatoms are unicellular phytoplankton (microscopic plant-like organisms) with cell walls made of silica (called a frustule). They live in both freshwater and saltwater and can be found in just about every place on Earth that is wet. The shape and morphology of the diatom frustule unique to each species are used for identification. Due to the microscopic size of diatoms, high-power microscopy is required for diatom identification. Diatoms are vital to life on Earth. They are photosynthetic primary producers, using sunlight to create oxygen and organic carbon from carbon dioxide and water. They are a significant source of the oxygen we breathe, have a major impact on the global carbon cycle (Smetacek, 1999), and are a food source for many aquatic organisms (Mann, 1993). Diatom abundance has even been demonstrated to have an influence on the diversity of larger marine mammals, including whales (Marx and Uhen, 2010). Data on diatom abundance and diversity are extremely useful in environmental studies.

Diatom species composition in the Raška river (Southwestern Serbia

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Vidaković Danijela P.

2015-01-01

Full Text Available The paper presents data on the composition of epilithic diatoms in the Raška River. Samples were collected by scraping stone surfaces with a brush from 5 localities along the Raška River in April, June, August and November 2011 and March and May 2012. Diatom frustules were cleaned using cold acid method, and mounted on permanent slides. An investigation of the Raška River resulted in description of 106 diatom taxa. The most species rich genera are Navicula (10, Gomphonema (10 and Nitzschia (9, while other genera are presented with one or more species. Detailed floristic analysis of the benthic diatom flora in this river has not been conducted before. Therefore, this paper provides a groundwork for future researches. [Projekat Ministarstva nauke Republike Srbije, br. TR 037009

Occurrence of Priming in the Degradation of Lignocellulose in Marine Sediments.

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Evangelia Gontikaki

Full Text Available More than 50% of terrestrially-derived organic carbon (terrOC flux from the continents to the ocean is remineralised in the coastal zone despite its perceived high refractivity. The efficient degradation of terrOC in the marine environment could be fuelled by labile marine-derived material, a phenomenon known as "priming effect", but experimental data to confirm this mechanism are lacking. We tested this hypothesis by treating coastal sediments with 13C-lignocellulose, as a proxy for terrOC, with and without addition of unlabelled diatom detritus that served as the priming inducer. The occurrence of priming was assessed by the difference in lignocellulose mineralisation between diatom-amended treatments and controls in aerobic sediment slurries. Priming of lignocellulose degradation was observed only at the initial stages of the experiment (day 7 and coincided with overall high microbial activity as exemplified by total CO2 production. Lignocellulose mineralisation did not differ consistently between diatom treatments and control for the remaining experimental time (days 14-28. Based on this pattern, we hypothesize that the faster initiation of lignocellulose mineralisation in diatom-amended treatments is attributed to the decomposition of accessible polysaccharide components within the lignocellulose complex by activated diatom degraders. The fact that diatom-degraders contributed to lignocellulose degradation was also supported by the different patterns in 13C-enrichment of phospholipid fatty acids between treatments. Although we did not observe differences between treatments in the total quantity of respired lignocellulose at the end of the experiment, differences in timing could be important in natural ecosystems where the amount of time that a certain compound is subject to aerobic degradation before burial to deeper anoxic sediments may be limited.

Phase properties of elastic waves in systems constituted of adsorbed diatomic molecules on the (001) surface of a simple cubic crystal

Science.gov (United States)

Deymier, P. A.; Runge, K.

2018-03-01

A Green's function-based numerical method is developed to calculate the phase of scattered elastic waves in a harmonic model of diatomic molecules adsorbed on the (001) surface of a simple cubic crystal. The phase properties of scattered waves depend on the configuration of the molecules. The configurations of adsorbed molecules on the crystal surface such as parallel chain-like arrays coupled via kinks are used to demonstrate not only linear but also non-linear dependency of the phase on the number of kinks along the chains. Non-linear behavior arises for scattered waves with frequencies in the vicinity of a diatomic molecule resonance. In the non-linear regime, the variation in phase with the number of kinks is formulated mathematically as unitary matrix operations leading to an analogy between phase-based elastic unitary operations and quantum gates. The advantage of elastic based unitary operations is that they are easily realizable physically and measurable.

Bioactive glass 45S5 from diatom biosilica

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Luqman A. Adams

2017-12-01

Full Text Available A major draw-back to large scale production of bioactive glasses is the high cost of the standard silica precursor, usually tetraethyl orthosilicate (TEOS. The current study describes a novel sol–gel preparation of 45S5 bioactive glass using diatom biosilica from cultured cells of the diatom, Aulacoseira granulata as substitute to TEOS. The glass formed was characterized using mechanical tester, scanning electron microscopy (SEM, energy dispersive X-ray analysis (EDX, X-ray diffraction (XRD and Fourier transform infrared (FTIR spectroscopy. Results showed that the glass possessed a compressive strength of 3.75 ± 0.18 and formed carbonated hydroxyapatite (HCA within 7 days in simulated body fluid (SBF, attributable to good surface chemistry. The performance of the glass was compared with that of those formed using TEOS. Diatom biosilica could be a potential economically friendly starting material for large scale fabrication of bioactive glasses.

Functionalized diatom silica microparticles for removal of mercury ions

International Nuclear Information System (INIS)

Yu Yang; Addai-Mensah, Jonas; Losic, Dusan

2012-01-01

Diatom silica microparticles were chemically modified with self-assembled monolayers of 3-mercaptopropyl-trimethoxysilane (MPTMS), 3-aminopropyl-trimethoxysilane (APTES) and n-(2-aminoethyl)-3-aminopropyl-trimethoxysilane (AEAPTMS), and their application for the adsorption of mercury ions (Hg(II)) is demonstrated. Fourier transform infrared spectroscopy and x-ray photoelectron spectroscopy analyses revealed that the functional groups (–SH or –NH 2 ) were successfully grafted onto the diatom silica surface. The kinetics and efficiency of Hg(II) adsorption were markedly improved by the chemical functionalization of diatom microparticles. The relationship among the type of functional groups, pH and adsorption efficiency of mercury ions was established. The Hg(II) adsorption reached equilibrium within 60 min with maximum adsorption capacities of 185.2, 131.7 and 169.5 mg g -1 for particles functionalized with MPTMS, APTES and AEAPTMS, respectively. The adsorption behavior followed a pseudo-second-order reaction model and Langmuirian isotherm. These results show that mercapto- or amino-functionalized diatom microparticles are promising natural, cost-effective and environmentally benign adsorbents suitable for the removal of mercury ions from aqueous solutions.

Diatom-inspired templates for 3D replication: natural diatoms versus laser written artificial diatoms

International Nuclear Information System (INIS)

Belegratis, M R; Schmidt, V; Nees, D; Stadlober, B; Hartmann, P

2014-01-01

The diatoms are ubiquitous, exist in large numbers and show a great diversity of features on their porous silica structures. Therefore, they inspire the fabrication of nanostructured templates for nanoimprint processes (NIL), where large structured areas with nanometer precision are required. In this study, two approaches regarding the respective challenges and potential exploitations are followed and discussed: the first one takes advantage of a template that is directly made of natural occurring diatoms. Here, two replication steps via soft lithography are needed to obtain a template which is subsequently used for NIL. The second approach exploits the technical capabilities of the precise 3D laser lithography (3DLL) based on two-photon polymerization of organic materials. This method enables the fabrication of arbitrary artificial diatom-inspired micro- and nanostructures and the design of an inverse structure. Therefore, only one replication step is needed to obtain a template for NIL. In both approaches, a replication technique for true 3D structures is shown. (paper)

Static vs dynamic settlement and adhesion of diatoms to ship hull coatings.

Science.gov (United States)

Zargiel, Kelli A; Swain, Geoffrey W

2014-01-01

Many experiments utilize static immersion tests to evaluate the performance of ship hull coatings. These provide valuable data; however, they do not accurately represent the conditions both the hull and fouling organisms encounter while a ship is underway. This study investigated the effect of static and dynamic immersion on the adhesion and settlement of diatoms to one antifouling coating (BRA 640), four fouling-release coatings (Intersleek(®) 700, Intersleek(®) 900, Hempasil X3, and Dow Corning 3140) and one standard surface (Intergard(®) 240 Epoxy). Differences in community composition were observed between the static and dynamic treatments. Achnanthes longipes was present on all coatings under static immersion, but was not present under dynamic immersion. This was also found for diatoms in the genera Bacillaria and Gyrosigma. Melosira moniformis was the only diatom present under dynamic conditions, but not static conditions. Several common fouling diatom genera were present on panels regardless of treatment: Amphora, Cocconeis, Entomoneis Cylindrotheca, Licmophora, Navicula, Nitzschia, Plagiotropis, and Synedra. Biofilm adhesion, diatom abundance and diatom diversity were found to be significantly different between static and dynamic treatments; however, the difference was dependent on coating and sampling date. Several coatings (Epoxy, DC 3140 and IS 700) had significantly higher biofilm adhesion on dynamically treated panels on at least one of the four sampling dates, while all coatings had significantly higher diatom abundance on at least one sampling date. Diversity was significantly greater on static panels than dynamic panels for Epoxy, IS 700 and HX3 at least once during the sampling period. The results demonstrate how hydrodynamic stress will significantly influence the microfouling community. Dynamic immersion testing is required to fully understand how antifouling surfaces will respond to biofilm formation when subjected to the stresses experienced

Diatom flora in subterranean ecosystems: a review

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Elisa Falasco

2014-09-01

Full Text Available In scarcity of light and primary producers, subterranean ecosystems are generally extremely oligotrophic habitats, receiving poor supplies of degradable organic matter from the surface. Human direct impacts on cave ecosystems mainly derive from intensive tourism and recreational caving, causing important alterations to the whole subterranean environment. In particular, artificial lighting systems in show caves support the growth of autotrophic organisms (the so-called lampenflora, mainly composed of cyanobacteria, diatoms, chlorophytes, mosses and ferns producing exocellular polymeric substances (EPSs made of polysaccharides, proteins, lipids and nucleic acids. This anionic EPSs matrix mediates to the intercellular communications and participates to the chemical exchanges with the substratum, inducing the adsorption of cations and dissolved organic molecules from the cave formations (speleothems. Coupled with the metabolic activities of heterotrophic microorganisms colonising such layer (biofilm, this phenomenon may lead to the corrosion of the mineral surfaces. In this review, we investigate the formation of biofilms, especially of diatom-dominated ones, as a consequence of artificial lighting and its impacts on speleothems. Whenever light reaches the subterranean habitat (both artificially and naturally a relative high number of species of diatoms may indeed colonise it. Cave entrances, artificially illuminated walls and speleothems inside the cave are generally the preferred substrates. This review focuses on the diatom flora colonising subterranean habitats, summarizing the information contained in all the scientific papers published from 1900 up to date. In this review we provide a complete checklist of the diatom taxa recorded in subterranean habitats, including a total of 363 taxa, belonging to 82 genera. The most frequent and abundant species recorded in caves and other low light subterranean habitats are generally aerophilic and

Late Maastrichtian foraminiferids and diatoms from the Polish Carpathians (Ropianka Formation, Skole Nappe): a case study from the Chmielnik-Grabówka composite section

Science.gov (United States)

Gasiński, M. Adam; Olshtynska, Alexandra; Uchman, Alfred

2013-12-01

Gasiński, M.A., Olshtynska, A. and Uchman, A. 2013. Late Maastrichtian foraminiferids and diatoms from the Polish Carpathians (Ropianka Formation, Skole Nappe): a case study from the Chmielnik-Grabowka composite section. Acta Geologica Polonica, 63(4), 515-525. Warszawa. Well-preserved foraminiferids have been found in the Chmielnik-Grabowka section (Skole Nappe, Polish Carpathians). The Abathomphalus mayaroensis (late Maastrichtian) and Racemiguembelina fructicosa (earlylate Maastrichtian) standard planktonic foraminiferal biozones have been recognized, based on the occurrence of their respective index species. Sediments of the R. fructicosa Zone contain diatoms, which are a rare component of Cretaceous flysch microfossil assemblages in the Carpathians. The diatom frustules and some foraminiferid tests are pyritized, probably after burial in the sediment, below the redox boundary or in the oxygen- deficient microenvironment inside the frustules or tests of microfossils; the presence of trace fossils and bioturbational structures in the same bed indicate an oxygenated sea floor.

Transparent Exopolymeric Particles (TEP Selectively Increase Biogenic Silica Dissolution From Fossil Diatoms as Compared to Fresh Diatoms

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Jordan Toullec

2018-03-01

Full Text Available Diatom production is mainly supported by the dissolution of biogenic silica (bSiO2 within the first 200 m of the water column. The upper oceanic layer is enriched in dissolved and/or colloidal organic matter, such as exopolymeric polysaccharides (EPS and transparent exopolymeric particles (TEP excreted by phytoplankton in large amounts, especially at the end of a bloom. In this study we explored for the first time the direct influence of TEP-enriched diatom excretions on bSiO2 dissolution. Twelve dissolution experiments on fresh and fossil diatom frustules were carried out on seawater containing different concentrations of TEP extracted from diatom cultures. Fresh diatom frustules were cleaned from the organic matter by low ash temperature, and fossil diatoms were made from diatomite powder. Results confirm that newly formed bSiO2 dissolved at a faster rate than fossil diatoms due to a lower aluminum (Al content. Diatom excretions have no effect on the dissolution of the newly formed bSiO2 from Chaetoceros muelleri. Reversely, the diatomite specific dissolution rate constant and solubility of the bSiO2 were positively correlated to TEP concentrations, suggesting that diatom excretion may provide an alternative source of dSi when limitations arise.

Doping of magnetite nanoparticles facilitates clean harvesting of diatom oil as biofuel for sustainable energy

Science.gov (United States)

Kumar, Vikas; Singh, Ramesh; Thakur, Shipra; Ballabh Joshi, Khashti; Vinayak, Vandana

2018-04-01

Photosynthetic unicellular brown algae diatoms are considered as photobioreactors (PBRs) that synthesize and store oil in the form of lipid droplets and the much of the crude oil we use comes from fossil diatoms. The clean extraction of this crude oil from diatoms is difficult task. The construction of green chemical protocols for the clean separation of diatom oil from cells without killing or to harm the diatom cells is still in its primitive stage. In this report we would like to propose that facile doping of magnetite on diatoms can be used for clean oil separation in PBRs. We doped magnetite nanoparticles onto the surface of diatom Diadesmis confervaceae a diatom which oozes oil naturally. Doping magnetite onto diatoms can also facilitate easy separation of oil when cells are kept in an electromagnetic field. The cell wall of diatom besides having SiOH group has 281 amino acids of which 187–188 amino acids are conserved and are known for metal binding sites. The magnetite nanoparticles bind to the SiOH groups and metal binding sites of amino acids. The presence of appropriate amine functionalized linkers forming peptide aminosilane shells can further facilitate the binding of peptide/polypeptides which can be used in drug delivery. Besides this the magnetite doped diatoms have wide applications in removal of phosphates and chromium from waste water too.

High-resolution climate of the past ∼7300 years of coastal northernmost California: Results from diatoms, silicoflagellates, and pollen

Science.gov (United States)

Barron, John A.; Bukry, David; Heusser, Linda E.; Addison, Jason A.; Alexander, Clark R.

2018-01-01

Piston core TN062-O550, collected about 33 km offshore of Eureka, California, contains a high-resolution record of the climate and oceanography of coastal northernmost California during the past ∼7.34 kyr. Chronology established by nine AMS ages on a combination of planktic foraminifers, bivalve shell fragments, and wood yields a mean sedimentation rate of 103 cm kyr−1. Marine proxies (diatoms and silicoflagellates) and pollen transported by the nearby Eel River reveal a stepwise development of both modern offshore surface water oceanography and coastal arboreal ecosystems. Beginning at ∼5.4 cal ka the relative abundance of coastal redwood pollen, a proxy for coastal fog, displays a two fold increase suggesting enhanced coastal upwelling. A decline in the relative contribution of subtropical diatoms at ∼5.0 cal ka implies cooling of sea surface temperatures (SSTs). At ∼3.6 cal ka an increase in the relative abundance of alder and oak at the expense of coastal redwood likely signals intensified riverine transport of pollen from inland environments. Cooler offshore SSTs and increased precipitation characterize the interval between ∼3.6 and 2.8 cal ka. A rapid, stepwise change in coastal climatology and oceanography occurs between ∼2.8 and 2.6 cal ka that suggests an enhanced expression of modern Pacific Decadal Oscillation-like (PDO) cycles. A three-fold increase in the relative abundance of the subtropical diatom Fragilariopsis doliolus at 2.8 cal ka appears to mark an abrupt warming of winter SSTs. Soon afterwards at 2.6 cal ka, a two fold increase in the relative abundance of coastal redwood pollen is suggestive of an abrupt intensification of spring upwelling. After ∼2.8 cal ka a sequence of cool-warm, PDO-like cycles occurs wherein cool cycles are characterized by relative abundance increases in coastal redwood pollen and decreased contributions of subtropical diatoms, whereas opposite proxy trends distinguish warm cycles.

Adatom Bond Dissociation in the Collision Between an Adsorbed Atom and Incident Diatomic Molecule: A Classical Trajectory Study

International Nuclear Information System (INIS)

Bayhan, U.

2004-01-01

The collisional dissociation of the Atom-Surface bond in the diatomic molecule (gas) / atom (ads) collision taking place on a bcc-structure surface have been studied by classical trajectory methods over the collision energy ranges and the attractive well depth of the diatomic molecule (gas) / atom (ads) interactions

Surface sediment quality relative to port activities: A contaminant-spectrum assessment.

Science.gov (United States)

Yu, Shen; Hong, Bing; Ma, Jun; Chen, Yongshan; Xi, Xiuping; Gao, Jingbo; Hu, Xiuqin; Xu, Xiangrong; Sun, Yuxin

2017-10-15

Ports are facing increasing environmental concerns with their importance to the global economy. Numerous studies indicated sediment quality deterioration in ports; however, the deterioration is not discriminated for each port activity. This study investigated a spectrum of contaminants (metals and organic pollutants) in surface sediments at 20 sampling points in Port Ningbo, China, one of the top five world ports by volume. The spectrum of contaminants (metals and organic pollutants) was quantified following marine sediment quality guidelines of China and USA and surface sediment quality was assessed according to thresholds of the two guidelines. Coupling a categorical matrix of port activities with the matrix of sedimentary contaminants revealed that contaminants were highly associated with the port operations. Ship repair posed a severe chemical risk to sediment. Operations of crude oil and coal loadings were two top activities related to organic pollutants in sediments while port operations of ore and container loadings discharged metals. Among the 20 sampling points, Cu, Zn, Pb, and DDT and its metabolites were the priority contaminants influencing sediment quality. Overall, surface sediments in Port Ningbo had relatively low environmental risks but ship repair is an environmental concern that must be addressed. This study provides a practical approach for port activity-related quality assessment of surface sediments in ports that could be applicable in many world sites. Copyright © 2017 Elsevier B.V. All rights reserved.

Expanded spatial extent of the Medieval Climate Anomaly revealed in lake-sediment records across the boreal region in northwest Ontario.

Science.gov (United States)

Laird, Kathleen R; Haig, Heather A; Ma, Susan; Kingsbury, Melanie V; Brown, Thomas A; Lewis, C F Michael; Oglesby, Robert J; Cumming, Brian F

2012-09-01

Multi-decadal to centennial-scale shifts in effective moisture over the past two millennia are inferred from sedimentary records from six lakes spanning a ~250 km region in northwest Ontario. This is the first regional application of a technique developed to reconstruct drought from drainage lakes (open lakes with surface outlets). This regional network of proxy drought records is based on individual within-lake calibration models developed using diatom assemblages collected from surface sediments across a water-depth gradient. Analysis of diatom assemblages from sediment cores collected close to the near-shore ecological boundary between benthic and planktonic diatom taxa indicated this boundary shifted over time in all lakes. These shifts are largely dependent on climate-driven influences, and can provide a sensitive record of past drought. Our lake-sediment records indicate two periods of synchronous signals, suggesting a common large-scale climate forcing. The first is a period of prolonged aridity during the Medieval Climate Anomaly (MCA, c. 900-1400 CE). Documentation of aridity across this region expands the known spatial extent of the MCA megadrought into a region that historically has not experienced extreme droughts such as those in central and western north America. The second synchronous period is the recent signal of the past ~100 years, which indicates a change to higher effective moisture that may be related to anthropogenic forcing on climate. This approach has the potential to fill regional gaps, where many previous paleo-lake depth methods (based on deeper centrally located cores) were relatively insensitive. By filling regional gaps, a better understanding of past spatial patterns in drought can be used to assess the sensitivity and realism of climate model projections of future climate change. This type of data is especially important for validating high spatial resolution, regional climate models. © 2012 Blackwell Publishing Ltd.

Response of Muddy Sediments and Benthic Diatom-based Biofilms to Repeated Erosion Events

Science.gov (United States)

Valentine, K.; Mariotti, G.; Fagherazzi, S.

2016-02-01

Benthic biofilms, microbes aggregated within a matrix of Extracellular Polymeric Substances (EPS), are commonly found in shallow coastal areas and intertidal environments. Biofilms have the potential to stabilize sediments, hence reducing erosion and possibly mitigating land loss. The purpose of this study is to determine how repeated flow events that rework the bed affect biofilm growth and its ability to stabilize cohesive sediments. Natural mud devoid of grazers was used to create placed beds in four annular flumes; biofilms were allowed to grow on the sediment surface. Each flume was eroded at different time intervals (1 or 12 days) to allow for varied levels of biofilm growth and adjustment following erosion. In addition, experiments with abiotic mud were performed by adding bleach to the tank. Each erosion test consisted of step-wise increases in flow that were used to measured erodibility. In the experiments where the bed was eroded every day both the abiotic and biotic flumes exhibited a decrease in erodibility with time, likely due to consolidation, but the decrease in erodibility was greater in the flume with a biofilm. Specifically the presence of biofilm reduced bed erosion at low shear stresses ( 0.1 Pa). We attribute this progressive decrease in erodibility to the accumulation of EPS over time: even though the biofilm was eroded during each erosion event, the EPS was retained within the flume, mixed with the eroded sediment and eventually settled. Less frequent erosion allowed the growth of a stronger biofilm that decreased bed erosion at higher shear stresses ( 0.4 Pa). We conclude that the time between destructive flow events influences the ability of biofilms to stabilize sediments. This influence will likely be affected by biofilm growth conditions such as light, temperature, nutrients, salinity, and the microbial community.

Diatom species composition of the Nišava river and its tributaries Jerma and Temska rivers (southern Serbia

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Andrejić Jelena Z.

2012-01-01

Full Text Available The main objective of this paper is to report the diatom taxa identified from the Nišava River and its tributaries, the Jerma and Temska rivers. The study area included 11 sampling sites along the Nišava River, with one site on the Jerma River and one on the Temska River. Monthly samples (from stones, sediments and macrophytes were collected from May 2008 to May 2009. Diatom frustules were cleaned with chemical agents, and mounted on permanent slides. In total, 194 diatom taxa were identified. The most species rich genera are Navicula (25, Nitzschia (17 and Gomphonema (13, while other genera are presented with one or more species. Detailed floristic analysis of the benthic diatom flora has not been conducted before on these rivers. Therefore, this paper provides a baseline for future research. [Acknowledgments. The work was supported by projects Nos. TR037009, III43002 and III45012 that are financed by the Ministry of Education and Science of the Republic of Serbia.

Estructura comunitaria de diatomeas presentes en los sedimentos superficiales de ocho lagos andinos de Chile central Diatoms community structure in superficial sediments of eight Andean lakes of central Chile

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INGRID E ALVIAL

2008-03-01

Full Text Available En este trabajo se analizó la estructura comunitaria de diatomeas depositadas en los sedimentos superficiales de ocho lagos andinos chilenos ubicados entre los 32°49' y 38°48' S. Se encontró un total de 99 taxa de diatomeas, distribuidos en 48 géneros. Del total de taxa, 74 fueron identificados a nivel de especie siendo todos ellos cosmopolitas a excepción de Eunotia andinofrequens, Gomphonema punae, Pinnularia araucanensis y Pinnularia acidicola, entre otras, que están descritos solo para el Hemisferio Sur. Por otro lado, las muestras analizadas presentaron distinta composición florística de diatomeas. De esta manera, en los ensambles diatomológicos depositados en los sedimentos de las lagunas de altura Ocho, Huifa, Ensueño y Negra ubicadas sobre los 2.860 m del nivel del mar, abundaron especies bentónicas, típicas de aguas oligotróficas y acidas como Achnanthidium exiguum, Achnanthidium minutissimum, Encyonema minutum, Pinnularia acidicola y Planothidium lanceolatum. En los ensambles diatomológicos de los lagos Galletué, Icalma y Laja, ubicados bajo los 1.360 m del nivel del mar, abundaron diatomeas planctónicas, características de aguas alcalinas y mesotróficas como Asterionella formosa, Aulacoseira distans, Aulacoseira granulata, Cyclotella stelligera y Rhopalodia gibbaIn this research the taxonomic structure of diatoms in sediments of high mountain lakes was studied. These lakes are located in Chile between 32°49' and 38°48' S in the Andean Cordillera. A total of 99 diatom taxa distributed in 48 genera were identified and all this taxa are cosmopolitan excepting a Eunotia andinofrequens, Gomphonema punae, Pinnularia araucanensis and Pinnularia acidicola, which are know only for the Southern Hemisphere. The assemblages of diatoms were different in the studied lakes. So the high mountain lakes Ocho, Huifa, Ensueño and Negra, dominated benthic diatoms which are typical of oligotrophic and acid waters as Achnanthidium

Are Diatoms “Green” Aluminosilicate Synthesis Microreactors for Future Catalyst Production?

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Lydia Köhler

2017-12-01

Full Text Available Diatom biosilica may offer an interesting perspective in the search for sustainable solutions meeting the high demand for heterogeneous catalysts. Diatomaceous earth (diatomite, i.e., fossilized diatoms, is already used as adsorbent and carrier material. While diatomite is abundant and inexpensive, freshly harvested and cleaned diatom cell walls have other advantages, with respect to purity and uniformity. The present paper demonstrates an approach to modify diatoms both in vivo and in vitro to produce a porous aluminosilicate that is serving as a potential source for sustainable catalyst production. The obtained material was characterized at various processing stages with respect to morphology, elemental composition, surface area, and acidity. The cell walls appeared normal without morphological changes, while their aluminum content was raised from the molar ratio n(Al:n(Si 1:600 up to 1:50. A specific surface area of 55 m2/g was measured. The acidity of the material increased from 149 to 320 µmol NH3/g by ion exchange, as determined by NH3 TPD. Finally, the biosilica was examined by an acid catalyzed test reaction, the alkylation of benzene. While the cleaned cell walls did not catalyze the reaction at all, and the ion exchanged material was catalytically active. This demonstrates that modified biosilica does indeed has potential as a basis for future catalytically active materials.

Enhanced adsorption of trivalent arsenic from water by functionalized diatom silica shells.

Directory of Open Access Journals (Sweden)

Jianying Zhang

Full Text Available The potential of porous diatom silica shells as a naturally abundant low-cost sorbent for the removal of arsenic in aqueous solutions was investigated in a batch study. The objective of this work was to chemically modify the silica shells of a diatom Melosira sp. with bifunctional (thiol and amino groups to effectively remove arsenic in its toxic As(III form (arsenite predominant in the aquatic environment. Sorption experiments with this novel sorbent were conducted under varying conditions of pH, time, dosage, and As(III concentration. A maximum adsorption capacity of 10.99 mg g-1 was achieved within 26 h for a solution containing 12 mg L-1 As(III at pH 4 and sorbent dosage of 2 g L-1. The functionalized diatom silica shells had a surface morphological change which was accompanied by increased pore size at the expense of reduced specific surface area and total pore volume. As(III adsorption was best fitted with the Langmuir-Freundlich model, and the adsorption kinetic data using pore surface diffusion model showed that both the external (film and internal (intraparticle diffusion can be rate-determining for As(III adsorption. Fourier transform infrared spectroscopy (FTIR indicated that the thiol and amino groups potentially responsible for As(III adsorption were grafted on the surface of diatom silica shells. X-ray photoelectron spectroscopy (XPS further verified that this unique sorbent proceeded via a chemisorption mechanism through the exchange between oxygen-containing groups of neutral As(III and thiol groups, and through the surface complexation between As(III and protonated nitrogen and hydroxyl groups. Results indicate that this functionalized bioadsorbent with a high As(III adsorption capacity holds promise for the treatment of As(III containing wastewater.

Sediment studies at Bikini Atoll part 1. distribution of fine and coarse components in surface sediments

International Nuclear Information System (INIS)

Noshkin, V. E.; Eagle, R.J.; Robison, W.L.

1997-01-01

In 1979, 21 years after the moratorium on nuclear testing in the Marshall Islands, surface sediment samples (to depths of 2 and 4 cm) were collected from 87 locations over the floor of Bikini lagoon. The main purpose for the collections was to map the distribution of long- lived man-made radionuclides associated with the bottom material. In addition the samples were processed to estimate the fraction of fine and coarse components to show what modifications occurred since the sediment composition was first described in samples collected before testing in 1946. In this report a comparison is made of the amount and distribution of fine material associated with the lagoon surface sediment before and after the testing of nuclear devices. Nuclear testing produced more finely divided material in-the surface sediment layer over large areas of the lagoon and especially in regions of the lagoon and reef adjacent to test sites. Five cratering events at Bikini Atoll generated sufficient material to account for the inventory of new fine material found over the bottom surface of the lagoon. Although the fraction of fine material in the bottom sediments was altered by the nuclear events, the combined processes of formation, transport and deposition were not sufficiently dynamic to alter the geographical features of the major sedimentary components over most of the lagoon floor

Sediment studies at Bikini Atoll part 1. distribution of fine and coarse components in surface sediments

Energy Technology Data Exchange (ETDEWEB)

Noshkin, V. E.; Eagle, R.J.; Robison, W.L.

1997-01-01

In 1979, 21 years after the moratorium on nuclear testing in the Marshall Islands, surface sediment samples (to depths of 2 and 4 cm) were collected from 87 locations over the floor of Bikini lagoon. The main purpose for the collections was to map the distribution of long- lived man-made radionuclides associated with the bottom material. In addition the samples were processed to estimate the fraction of fine and coarse components to show what modifications occurred since the sediment composition was first described in samples collected before testing in 1946. In this report a comparison is made of the amount and distribution of fine material associated with the lagoon surface sediment before and after the testing of nuclear devices. Nuclear testing produced more finely divided material in-the surface sediment layer over large areas of the lagoon and especially in regions of the lagoon and reef adjacent to test sites. Five cratering events at Bikini Atoll generated sufficient material to account for the inventory of new fine material found over the bottom surface of the lagoon. Although the fraction of fine material in the bottom sediments was altered by the nuclear events, the combined processes of formation, transport and deposition were not sufficiently dynamic to alter the geographical features of the major sedimentary components over most of the lagoon floor.

Destabilization of cohesive intertidal sediments by infauna

NARCIS (Netherlands)

De Deckere, E.; Tolhurst, T.J.; de Brouwer, J.F.C.

2001-01-01

Bioturbation activity was reduced in four plots on an intertidal mudflat in the Humber estuary (UK) during 4 days, by spraying the sediment with an insecticide, namely vydate. Macrofaunal, especially Nereis diversicolor and oligochaeta, and meiofaunal densities decreased, while the diatom biomass

Silicon diatom frustules as nanostructured photoelectrodes.

Science.gov (United States)

Chandrasekaran, Soundarrajan; Sweetman, Martin J; Kant, Krishna; Skinner, William; Losic, Dusan; Nann, Thomas; Voelcker, Nicolas H

2014-09-18

In the quest for solutions to meeting future energy demands, solar fuels play an important role. A particularly promising example is photocatalysis since even incremental improvements in performance in this process are bound to translate into significant cost benefits. Here, we report that semiconducting and high surface area 3D silicon replicas prepared from abundantly available diatom fossils sustain photocurrents and enable solar energy conversion.

Environmental and Spatial Influences on Biogeography and Community Structure of Benthic Diatoms

Science.gov (United States)

Plante, C.; Hill-Spanik, K.; Lowry, J.

2016-02-01

Several theoretical and practical reasons suggest that benthic microalgae could be useful bioindicators. For instance, an ideal indicator species or community would be associated with a given habitat due to local physical conditions or biotic interactions (i.e., `environmental filtering'), not due to dispersal limitation. Due to their small size, immense abundances, and reliance on passive dispersal, the popular notion about micro-organisms is that `Everything is everywhere, but, the environment selects' (Baas-Becking 1934). Although much recent research concerning planktonic bacteria and dispersal limitation has been conducted, very little in this regard is known about microeukaryotes, especially benthic microbes. The purpose of our study was to identify and compare spatial and environmental influences on benthic diatom community structure and biogeography. In summer 2015, sediment was sampled at various spatial scales from four barrier island beaches in South Carolina, USA, and high-throughput (Ion Torrent) DNA sequencing was used to characterize diatom assemblages. ANOSIM and principal coordinates analysis revealed that communities were statistically distinct on the four islands. Community dissimilarity was compared to both spatial distance and environmental differences to determine potential influences of these variables on community structure. We found that geographic distance had the strongest correlation with community similarity, with and without one anomalous location, while differences in temperature (air, water, and sediment), nutrients, organic matter, and turbidity also had significant but weaker relationships with community structure. Surprisingly, air temperature, which changes on very short time scales, appeared to be the environmental factor most strongly related to diatom species composition, potentially implicating some unmeasured variable (e.g., cloud cover). However, we also found that temperature and geographic distance were strongly

Urbanization increased metal levels in lake surface sediment and catchment topsoil of waterscape parks

Energy Technology Data Exchange (ETDEWEB)

Li, Hong-Bo [Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021 (China); Graduate University of Chinese Academy of Sciences, Beijing 100049 (China); Yu, Shen, E-mail: syu@iue.ac.cn [Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021 (China); Li, Gui-Lin [Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021 (China); Liu, Yi; Yu, Guang-Bin [Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021 (China); Graduate University of Chinese Academy of Sciences, Beijing 100049 (China); Deng, Hong [Department of Environmental Sciences, Tiantong National Station of Forest Ecosystem, Key Laboratory of Urbanization and Ecological Restoration, East China Normal University, Shanghai 200062 (China); Wu, Sheng-Chun [State Key Laboratory in Marine Pollution, Biology and Chemistry Department, City University of Hong Kong, Hong Kong (China); Wong, Ming-Hung [Croucher Institute for Environmental Sciences, Hong Kong Baptist University, Hong Kong (China)

2012-08-15

Lake surface sediment is mainly derived from topsoil in its catchment. We hypothesized that distribution of anthropogenic metals would be homogenous in lake surface sediment and the lake's catchment topsoil. Anthropogenic metal distributions (cadmium (Cd), copper (Cu), lead (Pb), and zinc (Zn)) in fourteen waterscape parks were investigated in surface sediments and catchment topsoils and possible source homogeneity was tested using stable Pb isotopic ratio analysis. The parks were located along an urbanization gradient consisting of suburban (SU), developing urban (DIU), developed urban (DDU), and central urban core (CUC) areas in Shanghai, China. Results indicated that surface lake sediments and catchment topsoils in the CUC parks were highly contaminated by the investigated anthropogenic metals. Total metal contents in surface sediment and topsoil gradually increased along the urbanization gradient from the SU to CUC areas. Generally, the surface sediments had greater total metal contents than their catchment topsoils. These results suggest that urbanization drives the anthropogenic metal enrichment in both surface sediment and its catchment topsoil in the waterscape parks. Soil fine particles (< 63 {mu}m) and surface sediments had similar enrichment ratios of metals, suggesting that surface runoff might act as a carrier for metals transporting from catchment to lake. Stable Pb isotope ratio analysis revealed that the major anthropogenic Pb source in surface sediment was coal combustion as in the catchment topsoil. Urbanization also correlated with chemical fractionation of metals in both surface sediment and catchment topsoil. From the SU to the CUC parks, amounts of labile metal fractions increased while the residual fraction of those metals remained rather constant. In short, urbanization in Shanghai drives anthropogenic metal distribution in environmental matrices and the sources were homogenous. -- Highlights: Black-Right-Pointing-Pointer Obvious

Urbanization increased metal levels in lake surface sediment and catchment topsoil of waterscape parks

International Nuclear Information System (INIS)

Li, Hong-Bo; Yu, Shen; Li, Gui-Lin; Liu, Yi; Yu, Guang-Bin; Deng, Hong; Wu, Sheng-Chun; Wong, Ming-Hung

2012-01-01

Lake surface sediment is mainly derived from topsoil in its catchment. We hypothesized that distribution of anthropogenic metals would be homogenous in lake surface sediment and the lake's catchment topsoil. Anthropogenic metal distributions (cadmium (Cd), copper (Cu), lead (Pb), and zinc (Zn)) in fourteen waterscape parks were investigated in surface sediments and catchment topsoils and possible source homogeneity was tested using stable Pb isotopic ratio analysis. The parks were located along an urbanization gradient consisting of suburban (SU), developing urban (DIU), developed urban (DDU), and central urban core (CUC) areas in Shanghai, China. Results indicated that surface lake sediments and catchment topsoils in the CUC parks were highly contaminated by the investigated anthropogenic metals. Total metal contents in surface sediment and topsoil gradually increased along the urbanization gradient from the SU to CUC areas. Generally, the surface sediments had greater total metal contents than their catchment topsoils. These results suggest that urbanization drives the anthropogenic metal enrichment in both surface sediment and its catchment topsoil in the waterscape parks. Soil fine particles (< 63 μm) and surface sediments had similar enrichment ratios of metals, suggesting that surface runoff might act as a carrier for metals transporting from catchment to lake. Stable Pb isotope ratio analysis revealed that the major anthropogenic Pb source in surface sediment was coal combustion as in the catchment topsoil. Urbanization also correlated with chemical fractionation of metals in both surface sediment and catchment topsoil. From the SU to the CUC parks, amounts of labile metal fractions increased while the residual fraction of those metals remained rather constant. In short, urbanization in Shanghai drives anthropogenic metal distribution in environmental matrices and the sources were homogenous. -- Highlights: ► Obvious urbanization effect on metal

Diatom-Based Paleoenvironmental Reconstruction of Lake Telmen for the Last 6230 Years

Directory of Open Access Journals (Sweden)

N.Soninkhishig

2003-06-01

Full Text Available The preserved diatom flora in a 14C dated (0-6230 yBP, 343 cm long core sequence from Lake Telmen, Mongolia, was investigated to determine the nature of the lake-ecosystem and watershed response to Late Holocene climate change. Modern Lake Telmen is a slightly saline (presently 4 g L-1 closed- basin lake located along a N-S and E-W aridity ecotone in north-central Mongolia, making it sensitive to climate-driven changes in effective moisture balance. Diatoms were not preserved regularly in two areas of the Lake Telmen sediment record (5380-41 50 yBP and 1050-425 yBP possibly due to high carbonate preservation; however, diatom preservation between these areas was good to excellent. Diatom-based paleosalinity reconstruction using species-specific salinity optima from the Northern Great Plains of North America and community analysis suggests the following climate-lake response model during the Late Holocene. From 6230 to 5520 radiocarbon years ago, warm-dry climate resulted in a small salty (20 g L-1 lake in the Telmen basin that was dominated by high salinity indicator species (e.g. Cyclotella caspia, Navicellapusilla, Brachysira aponina. From 3 860 to 1200 radiocarbon yBP, Lake Telmen recorded a period of a modulating climate that resulted in regular fluctuations in paleosalinity from 2 to 4 g L-1 in conjunction with lake level changes. Dominance in the diatom flora fluctuated between the freshwater planktonic form Cyclotella bodanica var. affinis and the salinity-tolerant benthic taxon Anomoeoneis sphaerophora f. costata during this period characterized by generally more humid climatic periods interspersed with dry-as-present conditions. The most modern samples (0-250 yBP preserve floristic assemblages similar to those found between 3860 to 1200 radiocarbon yBP and indicate that as recently as 250 years ago Lake Telmen had lower salinity values than modern day.

A Quantitative Proxy for Sea-Ice Based on Diatoms: A Cautionary Tale.

Science.gov (United States)

Nesterovich, A.; Caissie, B.

2016-12-01

Sea ice in the Polar Regions supports unique and productive ecosystems, but the current decline in the Arctic sea ice extent prompts questions about previous sea ice declines and the response of ice related ecosystems. Since satellite data only extend back to 1978, the study of sea ice before this time requires a proxy. Being one of the most productive, diatom-dominated regions in the world and having a wide range of sea ice concentrations, the Bering and Chukchi seas are a perfect place to find a relationship between the presence of sea ice and diatom community composition. The aim of this work is to develop a diatom-based proxy for the sea ice extent. A total of 473 species have been identified in 104 sediment samples, most of which were collected on board the US Coast Guard Cutter Healy ice breaker (2006, 2007) and the Norseman II (2008). The study also included some of the archived diatom smear slides made from sediments collected in 1969. The assemblages were compared to satellite-derived sea ice extent data averaged over the 10 years preceding the sampling. Previous studies in the Arctic and Antarctic regions demonstrated that the Generalized Additive Model (GAM) is one of the best choices for proxy construction. It has the advantage of using only several species instead of the whole assemblage, thus including only sea ice-associated species and minimizing the noise created by species responding to other environmental factors. Our GAM on three species (Connia compita, Fragilariopsis reginae-jahniae, and Neodenticula seminae) has low standard deviation, high level of explained variation, and holds under the ten-fold cross-validation; the standard residual analysis is acceptable. However, a spatial residual analysis revealed that the model consistently over predicts in the Chukchi Sea and under predicts in the Bering Sea. Including a spatial model into the GAM didn't improve the situation. This has led us to test other methods, including a non-parametric model

Aggregation and sedimentation processes during a spring phytoplankton bloom: A field experiment to test coagulation theory

DEFF Research Database (Denmark)

Kiørboe, Thomas; Lundsgaard, Claus; Olesen, Michael

1994-01-01

Spring diatom blooms in temperate waters are often terminated by aggregation of the cells into large floes and subsequent mass sedimentation of the phytoplankton to the sea floor. The rate of aggregate formation by physical coagulation depends on the concentration of suspended particles, on the t......Spring diatom blooms in temperate waters are often terminated by aggregation of the cells into large floes and subsequent mass sedimentation of the phytoplankton to the sea floor. The rate of aggregate formation by physical coagulation depends on the concentration of suspended particles...

Biosilica from Living Diatoms: Investigations on Biocompatibility of Bare and Chemically Modified Thalassiosira weissflogii Silica Shells

Directory of Open Access Journals (Sweden)

Stefania Roberta Cicco

2016-12-01

Full Text Available In the past decade, mesoporous silica nanoparticles (MSNs with a large surface area and pore volume have attracted considerable attention for their application in drug delivery and biomedicine. Here we propose biosilica from diatoms as an alternative source of mesoporous materials in the field of multifunctional supports for cell growth: the biosilica surfaces were chemically modified by traditional silanization methods resulting in diatom silica microparticles functionalized with 3-mercaptopropyl-trimethoxysilane (MPTMS and 3-aminopropyl-triethoxysilane (APTES. Fourier transform infrared spectroscopy and X-ray photoelectron spectroscopy analyses revealed that the –SH or –NH2 were successfully grafted onto the biosilica surface. The relationship among the type of functional groups and the cell viability was established as well as the interaction of the cells with the nanoporosity of frustules. These results show that diatom microparticles are promising natural biomaterials suitable for cell growth, and that the surfaces, owing to the mercapto groups, exhibit good biocompatibility.

Luminescence properties of a nanoporous freshwater diatom.

Science.gov (United States)

Goswami, Bondita; Choudhury, Amarjyoti; Buragohain, Alak K

2012-01-01

Freshwater diatom frustules show special optical properties. In this paper we observed luminescence properties of the freshwater diatom Cyclotella meneghiniana. To confirm the morphological properties we present scanning electron microscopy (SEM) images. X-ray diffraction (XRD) studies were carried out to visualize the structural properties of the frustules, confirming that silica present in diatom frustules crystallizes in an α-quartz structure. Study of the optical properties of the silica frustules of diatoms using ultra-violet-visible (UV-vis) spectroscopy and photoluminescence spectroscopy confirmed that the diatom C. meneghiniana shows luminescence in the blue region of the electromagnetic spectrum when irradiated with UV light. This property of diatoms can be exploited to obtain many applications in day-to-day life. Also, using time-resolved photoluminescence spectroscopy (TRPL) it was confirmed that this species of diatom shows bi-exponential decay. Copyright © 2011 John Wiley & Sons, Ltd.

Using biodiversity of diatoms to identify hydrological connectivity in the hillslope-riparian zone-stream system

Science.gov (United States)

Wetzel, C. E.; Martínez-Carreras, N.; Ector, L.; Hlubikova, D.; Frentress, J.; McDonnell, J. J.; Hoffmann, L.; Pfister, L.

2012-04-01

In recent years, there have been increasingly calls for new eco-hydrological approaches to answer questions on water source and connectivity in the landscape. Diatoms are one of the most common and diverse algal groups, and offer the potential for the identification of reproducible flow patterns and a link to underlying watershed behaviour. Our preliminary investigations on the potential for terrestrial diatoms to detect the onset/cessation of surface runoff suggested that diatoms can contribute to confirm or reject the existence of a surface runoff component in total runoff, thereby helping to constrain assumptions made on a potential surface runoff component in a conventional tracer based hydrograph separation. Our investigations currently focus on the Attert River basin (Luxembourg, Europe) and the HJ Andrews experimental forest (Oregon, USA). Here we show results from the schistose Weierbach experimental catchment (0.45 km2), located in the Attert River basin. Ordination analysis revealed a clear distinction between communities belonging to the river bed substrate and the riparian zone. Drift samples corresponding to stream water show a mixed composition of diatoms stemming from the river bed substrate and the riparian zone. Ongoing investigations focus on the composition of hillslope communities. In winter, long-lasting low intensity rainfall events generate a two-tailed hydrograph response of the Weierbach, consisting in an immediate reaction to precipitation, followed by a delayed and much more significant rise of the hydrograph. For these events, mixing diagrams (SiO2 & Absorbance) suggest a substantial contribution of the soil water component to total runoff, with groundwater and especially overland flow remaining insignificant. Terrestrial diatom abundance appeared to be very sensitive to incident precipitation (rising to +/- 15% of the total diatom population), suggesting a rapid connectivity between the soil surface and the stream. In summer, short and

Diatoms from a peat bog on the Pešter plateau (southwestern Serbia: New records for diatom flora of Serbia

Directory of Open Access Journals (Sweden)

Vidaković Danijela

2016-01-01

Full Text Available The distribution of diatoms was studied in three types of diatom communities (epiphytes, benthos and plankton of a peat bog on the Pešter plateau. The observed diatom flora inhabited all investigated communities, comprising in total 250 taxa in 53 genera. Among them, 45 taxa were new records for the Serbian diatom flora. Identified taxa belonged to different groups of algae, however alkaliphile diatoms were dominant. New ecological data for Encyonopsis minuta, Pinnularia isostauron and P. marchica are presented here. All the diatoms were documented by light micrographs, and brief notes on their morphology, distribution and ecology are provided. [Projekat Ministarstva nauke Republike Srbije, br. TR 037009

Measuring the role of seagrasses in regulating sediment surface elevation

KAUST Repository

Potouroglou, Maria

2017-09-13

Seagrass meadows provide numerous ecosystem services and their rapid global loss may reduce human welfare as well as ecological integrity. In common with the other \\'blue carbon\\' habitats (mangroves and tidal marshes) seagrasses are thought to provide coastal defence and encourage sediment stabilisation and surface elevation. A sophisticated understanding of sediment elevation dynamics in mangroves and tidal marshes has been gained by monitoring a wide range of different sites, located in varying hydrogeomorphological conditions over long periods. In contrast, similar evidence for seagrasses is sparse; the present study is a contribution towards filling this gap. Surface elevation change pins were deployed in four locations, Scotland, Kenya, Tanzania and Saudi Arabia, in both seagrass and unvegetated control plots in the low intertidal and shallow subtidal zone. The presence of seagrass had a highly significant, positive impact on surface elevation at all sites. Combined data from the current work and the literature show an average difference of 31 mm per year in elevation rates between vegetated and unvegetated areas, which emphasizes the important contribution of seagrass in facilitating sediment surface elevation and reducing erosion. This paper presents the first multi-site study for sediment surface elevation in seagrasses in different settings and species.

Measuring the role of seagrasses in regulating sediment surface elevation

Science.gov (United States)

Potouroglou, Maria; Bull, James C.; Krauss, Ken W.; Kennedy, Hilary A.; Fusi, Marco; Daffonchio, Daniele; Mangora, Mwita M.; Githaiga, Michael N.; Diele, Karen; Huxham, Mark

2017-01-01

Seagrass meadows provide numerous ecosystem services and their rapid global loss may reduce human welfare as well as ecological integrity. In common with the other ‘blue carbon’ habitats (mangroves and tidal marshes) seagrasses are thought to provide coastal defence and encourage sediment stabilisation and surface elevation. A sophisticated understanding of sediment elevation dynamics in mangroves and tidal marshes has been gained by monitoring a wide range of different sites, located in varying hydrogeomorphological conditions over long periods. In contrast, similar evidence for seagrasses is sparse; the present study is a contribution towards filling this gap. Surface elevation change pins were deployed in four locations, Scotland, Kenya, Tanzania and Saudi Arabia, in both seagrass and unvegetated control plots in the low intertidal and shallow subtidal zone. The presence of seagrass had a highly significant, positive impact on surface elevation at all sites. Combined data from the current work and the literature show an average difference of 31 mm per year in elevation rates between vegetated and unvegetated areas, which emphasizes the important contribution of seagrass in facilitating sediment surface elevation and reducing erosion. This paper presents the first multi-site study for sediment surface elevation in seagrasses in different settings and species.

The diatom flora of Lake Kinneret (Israel) - Paleolimnological evidence for Holocene climate change and human impact in the southeastern Mediterranean

Science.gov (United States)

Vossel, Hannah; Reed, Jane M.; Litt, Thomas

2015-04-01

The Mediterranean basin is a region of highly complex topography and climatic variability, such that our understanding of the past environmental variability is still limited. Diatoms (single-celled siliceous algae, Bacillariophyceae) are abundant, diverse and sensitive to a wide range of environmental parameters. They are often well preserved in lake sediment records, and have well-recognised potential to generate high-quality paleolimnological data. Diatoms remain one of the least-exploited proxies in Mediterranean palaeoclimate research. Here, we present results of diatom analysis of an 18 m sediment core from Lake Kinneret (Israel) as part of a multi-proxy study of Holocene climate change and human impact in the Levant (http://www.sfb806.uni-koeln.de). Results are compared with other proxy data including pollen, and with output data from regional climate modelling, to strengthen interpretation of environmental change in the southeastern Mediterranean. The results show remarkable shifts in the diatom flora over the last ca. 8,000 years. Preliminary investigations show that 98% of the diatom taxa can be classified as oligohalobous-indifferent and as alkaliphilous, as is typical of freshwater, alkaline lakes of open hydrology in limestone, karst-dominated catchments. Changes in the diatom data over time can be interpreted mainly in terms of productivity shifts, with a clear trend from oligotrophic at the base to hypereutrophic in the modern lake. The eutrophication trend accelerates after ca. 3,000 cal. yrs. BP, indicating the influence of increased human activity in the catchment, identified previously by analysis of the vegetational history (Schiebel, 2013). The analysis of the composition of the diatom flora also provides some evidence for lake-level fluctuations, as a proxy for shifts in moisture availability. Low lake-level stands are characterized by low diatom concentration and increased relative abundance of littoral taxa. High lake-level stands are marked

Oxygen isotopic ratio of the diatom siliceous valves: development of a new method in quantitative paleoclimatology

International Nuclear Information System (INIS)

Labeyrie, Laurent.

1979-07-01

This paper describes a new method allowing the measurement of the 18 O/ 16 O ratio of the biogenic silica oxygen, which takes into account the effects due to the organic matter and hydration water associated with this type of silica. By isotopic exchange with enriched water, we have been able to fix a treatment which eliminate all contamination and memory effects. This has permitted us to study the temperature dependance of the hydrated silica-water oxygen isotopic fractionation. As application, we present a study of the variations of the delta 18 O of fossil diatoms valves along an Equatorial Pacific sediment core covering the last 20.000 years. The results demonstrate the usefulness of the delta 18 O of the diatom silica for paleoclimatic investigations [fr

Evolution of a Holsteinian (MIS 11c) palaeolake based on a 12-ka-long diatom record from Dethlingen (northern Germany)

NARCIS (Netherlands)

Koutsodendris, A.; Lotter, A.F.; Kirilova, E.P.|info:eu-repo/dai/nl/304838071; Verhagen, F.; Brauer, A.; Pross, J.

2013-01-01

To provide insights into the long-term evolution of aquatic ecosystems without human interference, we hereevaluate a decadal- to centennial-scale-resolution diatom record spanning about 12 ka of the Holsteinian inter-glacial (Marine Isotope Stage 11c). Using a partially varved sediment core from the

A reconstruction of the environment of Rettig in the city of Turku, Finland on the basis of diatom, pollen, plant macrofossil and phytolith analyses

Directory of Open Access Journals (Sweden)

Vuorela, I.

1996-12-01

Full Text Available Palynological and palaeobotanical results from three representative cores investigated in 1994—1995 in connection with the archaeological excavations in the Rettig "Palace", Turku, Finland, are discussed. The cultural layer consisted of a heterogeneous urban upper stratum and a more humid and more homogeneous lower stratum, all resting on a clay sequence several metres thick. A chronological series of marine clay, partly river-washed and redeposited clay, and clayey soil characterized by aerophilous diatoms was determined. Diatom analysis was used to reconstruct sedimentation environment and the development of the natural landscape in relation to land uplift. Pollen analysis was used to trace the transformation of the natural landscape into a cultural landscape and finally into an urban settlement area. The pollen results were complemented by those on plant macrofossils, which consisted of the remnants of 124 species of many different groups, such as natural, cultivated, imported, medical and collected plants. Phytoliths were investigated from the surface material of a grindstone found on the site, and typical morphotypes were described although no typical cereal phytoliths could be identified.

The role of herbicides in the erosion of salt marshes in eastern England

International Nuclear Information System (INIS)

Mason, C.F.; Underwood, G.J.C.; Baker, N.R.; Davey, P.A.; Davidson, I.; Hanlon, A.; Long, S.P.; Oxborough, K.; Paterson, D.M.; Watson, A.

2003-01-01

Herbicide run-off stresses saltmarsh diatoms and higher plants and may increase erosion. - Laboratory studies and field trials were conducted to investigate the role of herbicides on saltmarsh vegetation, and their possible significance to saltmarsh erosion. Herbicide concentrations within the ranges present in the aquatic environment were found to reduce the photosynthetic efficiency and growth of both epipelic diatoms and higher saltmarsh plants in the laboratory and in situ. The addition of sublethal concentrations of herbicides resulted in decreased growth rates and photosynthetic efficiency of diatoms and photosynthetic efficiency of higher plants. Sediment stability also decreased due to a reduction in diatom EPS production. There was qualitative evidence that diatoms migrated deeper into the sediment when the surface was exposed to simazine, reducing surface sediment stability by the absence of a cohesive biofilm. Sediment loads on leaves severely reduced photosynthesis in Limonium vulgare. This, coupled with reduced carbon assimilation from the effects of herbicides, could have large negative consequences for plant productivity and over winter survival of saltmarsh plants. The data support the hypothesis that sublethal herbicide concentrations could be playing a role in the increased erosion of salt marshes that has occurred over the past 40 years

Anaerobic nitrogen turnover by sinking diatom aggregates at varying ambient oxygen levels

DEFF Research Database (Denmark)

Stief, Peter; Kamp, Anja; Thamdrup, Bo

2016-01-01

nitrate supply. Sinking diatom aggregates can contribute directly to fixed-nitrogen loss in low-oxygen environments in the ocean and vastly expand the ocean volume in which anaerobic nitrogen turnover is possible, despite relatively high ambient oxygen levels. Depending on the extent of intracellular......In the world’s oceans, even relatively low oxygen levels inhibit anaerobic nitrogen cycling by free-living microbes. Sinking organic aggregates, however, might provide oxygen-depleted microbial hotspots in otherwise oxygenated surface waters. Here, we show that sinking diatom aggregates can host...

Deep carbon export from a Southern Ocean iron-fertilized diatom bloom

Digital Repository Service at National Institute of Oceanography (India)

Smetacek, V.; Klaas, C.; Strass, V.H.; Assmy, P.; Montresor, M.; Cisewski, B.; Savoye, N.; Webb, A.; d’Ovidio, F.; Arrieta, J.M.; Bathmann, U.; Bellerby, R.; Berg, G.M.; Croot, P.; Gonzalez, S.; Henjes, J.; Herndl, G.J.; Hoffmann, L.J.; Leach, H.; Losch, M.; Mills, M.M.; Neill, C.; Peeken, I.; Rottgers, R.; Sachs, O.; Sauter, E.; Schmidt, M.M.; Schwarz, J.; Terbruggen, A.; Wolf-Gladrow, D.

Fertilization of the ocean by adding iron compounds has induced diatom-dominated phytoplankton blooms accompanied by considerable carbon dioxide drawdown in the ocean surface layer. However, because the fate of bloom biomass could not be adequately...

Live autochthonous benthic diatoms on the lower depths of Arctic continental shelf. Preliminary results

Directory of Open Access Journals (Sweden)

Elena Druzhkova

2018-01-01

Full Text Available An autochthonous community of benthic diatoms was discovered in June 2015 in the upper sediment layer at depths of 170, 205, and 245 m in the central Barents Sea. At least three benthic microalgae species (Gyrosigma fasciola, Pleurosigma angulatum, and Pleurosigma sp. 1 were detected in the sediment but not the upper water column. Analyses revealed that these benthic microalgae represent a depleted fragment of Arctic littoral microphytobenthos. Compared with the littoral flora, the deep-water assemblage is less diverse and displays low abundance. The data reported here challenge the generally accepted belief that the presence of certain microalgae at significant depths results from vertical or horizontal transfer.

Effect of Low ph on Carbohydrate Production by a Marine Planktonic Diatom (Chaetoceros muelleri)

International Nuclear Information System (INIS)

Thornton, D.C.O.

2009-01-01

Rising carbon dioxide (CO 2 ) concentrations in the atmosphere due to human activity are causing the surface ocean to become more acidic. Diatoms play a pivotal role in biogeochemical cycling and ecosystem function in the ocean. ph affected the quantum efficiency of photosystem II and carbohydrate metabolism in a planktonic diatom (Chaetoceros muelleri), representative of a widely distributed genus. In batch cultures grown at low ph, the proportion of total carbohydrate stored within the cells decreased and more dissolved carbohydrates were exuded from the cells into the surrounding medium. Changes in productivity and the way in which diatoms allocate carbon into carbohydrates may affect ecosystem function and the efficiency of the biological carbon pump in a low ph ocean.

Preliminary Report on Unique Laminated Holocene Sediments from the Qarun Lake in Egypt

Directory of Open Access Journals (Sweden)

Marks Leszek

2016-06-01

Full Text Available The Lake Qarun (Faiyum Oasis, northern Egypt is a relic of the much larger Holocene lake. Past lake levels and extensions were reconstructed, based on setting of archaeological sites scattered along northern paleoshores of the ancient lake. However, geoarcheological works did not yield enough data to establish continuous environmental history of the lake. A deep drilling FA-1 on the southeastern shore of the lake, performed in 2014, supplied with a core, 26 m long that is the one of the longest lake sediment cores in northeastern Africa. The basal section of the core consisted of thin-laminated diatom marly deposits, underlain at the Late Pleistocene/Holocene boundary by coarse-grained sands. The sediment lamine were quite well developed, especially in the lower part of the core. Preliminary results indicated annually deposited sediment sequence with seasonality signals provided by microlamine of diatoms, calcite, organic matter and clastic material. Early Holocene varved sediments from the Faiyum Oasis supplied with exceptional paleoenvironmental data for northeastern Africa, which enriched a record from previous logs drilled at the southwestern margin of the Qarun Lake.

Silica diatom shells tailored with Au nanoparticles enable sensitive analysis of molecules for biological, safety and environment applications

KAUST Repository

Onesto, V.; Villani, M.; Coluccio, M. L.; Majewska, R.; Alabastri, A.; Battista, E.; Schirato, A.; Calestani, D.; Coppedé , N.; Cesarelli, M.; Amato, F.; Di Fabrizio, Enzo M.; Gentile, F.

2018-01-01

Diatom shells are a natural, theoretically unlimited material composed of silicon dioxide, with regular patterns of pores penetrating through their surface. For their characteristics, diatom shells show promise to be used as low cost, highly efficient drug carriers, sensor devices or other micro-devices. Here, we demonstrate diatom shells functionalized with gold nanoparticles for the harvesting and detection of biological analytes (bovine serum albumin—BSA) and chemical pollutants (mineral oil) in low abundance ranges, for applications in bioengineering, medicine, safety, and pollution monitoring.

Silica diatom shells tailored with Au nanoparticles enable sensitive analysis of molecules for biological, safety and environment applications

KAUST Repository

Onesto, V.

2018-04-19

Diatom shells are a natural, theoretically unlimited material composed of silicon dioxide, with regular patterns of pores penetrating through their surface. For their characteristics, diatom shells show promise to be used as low cost, highly efficient drug carriers, sensor devices or other micro-devices. Here, we demonstrate diatom shells functionalized with gold nanoparticles for the harvesting and detection of biological analytes (bovine serum albumin—BSA) and chemical pollutants (mineral oil) in low abundance ranges, for applications in bioengineering, medicine, safety, and pollution monitoring.

Fine and coarse components in surface sediments from Bikini Lagoon

Energy Technology Data Exchange (ETDEWEB)

Noshkin, V. E., LLNL

1997-01-01

In 1979, 21 years after the moratorium on nuclear testing in the Marshall Islands, surface sediment samples (to depths of 2 and 4 cm) were collected from 87 locations in the lagoon of Bikini Atoll, one of the two sites in the Marshall Islands used by the United States to test nuclear devices from 1946 through 1958. The main purpose for the collections was to map the distribution of long-lived man-made radionuclides associated with the bottom material. In addition the samples were processed to estimate the fraction of fine and coarse components to show, by comparison, what modifications occurred in the composition since the sediments were first described in samples collected before testing in 1946. Nuclear testing produced more finely divided material that is now found in the surface sediment layer over large areas of the lagoon and especially in regions of the lagoon and reef adjacent to test sites. The 5 cratering events alone at Bikini Atoll redistributed sufficient material to account for the higher inventory of fine material found over the surface 4 cm of the sediment of the lagoon. Although the fraction of fine material in the bottom sediments was altered by the nuclear events, the combined processes of formation, transport and deposition were not sufficiently dynamic to greatly change the general geographical features of the major sedimentary components over most of the lagoon floor.

Colloquium on diatom-copepod interactions

DEFF Research Database (Denmark)

Paffenhofer, G.A.; Ianora, A.; Miralto, A.

2005-01-01

in situ were also addressed. During the plenary session, the most recent advances on this topic were presented. The plenary session was followed by 3 working groups on (1) production of aldehydes by phytoplankton, (2) toxic and nutritional effects of diatoms on zooplankton, and (3) the chemistry of diatom...

Controlling dynamics in diatomic systems

Indian Academy of Sciences (India)

WINTEC

Abstract. Controlling molecular energetics using laser pulses is exemplified for nuclear motion in two different diatomic systems. The problem of finding the optimized field for maximizing a desired quantum dynamical target is formulated using an iterative method. The method is applied for two diatomic sys- tems, HF and OH.

Sediment studies at Bikini Atoll part 3. Inventories of some long-lived gamma-emitting radionuclides associated with lagoon surface sediments

Energy Technology Data Exchange (ETDEWEB)

Noshkin, V.E.

1997-12-01

Surface sediment samples were collected during 1979 from 87 locations in the lagoon at Bikini Atoll. The collections were made to better define the concentrations and distribution of long-lived radionuclides associated with the bottom material and to show what modifications occurred to the composition of the surface sediment from the nuclear testing program conducted by the United States at the Atoll between 1946 and 1958. This is the last of three reports on Bikini sediment studies. In this report, we discuss the concentrations and inventories of the residual long-lived gamma-emitting radionuclides in sediments from the lagoon. The gamma-emitting radionuclides detected most frequently in sediments collected in 1979, in addition to Americium-241 ({sup 241}Am) (discussed in the second report of this series), included Cesium-137 ({sup 137}Cs), Bismuth-207 ({sup 207}Bi), Europium-155 ({sup 155}Eu), and Cobalt-60 ({sup 60}Co). Other man-made, gamma-emitting radionuclides such as Europium-152,154 ({sup 152,154}Eu), Antimony-125 ({sup 125}Sb), and Rhodium-101,102m ({sup 101,102m}Rh) were occasionally measured above detection limits in sediments near test site locations. The mean inventories for {sup 137}Cs, {sup 207}Ei, {sup 155}Eu, and {sup 60}Co in the surface 4 cm of the lagoon sediment to be 1.7, 0.56, 7.76, and 0.74 TBq, respectively. By June 1997, radioactive decay would reduce these values to 1.1, 0.38, 0.62, and 0.07 TBq, respectively. Some additional loss results from a combination of different processes that continuously mobilize and return some amount of the radionuclides to the water column. The water and dissolved constituents are removed from the lagoon through channels and exchange with the surface waters of the north equatorial Pacific Ocean. Highest levels of these radionuclides are found in surface deposits lagoonward of the Bravo Crater. Lowest concentrations and inventories are associated with sediment lagoonward of the eastern reef. The quantities in

Seasonal variation of monomethylmercury concentrations in surface sediments of the Tagus Estuary (Portugal)

International Nuclear Information System (INIS)

Canario, Joao; Branco, Vasco; Vale, Carlos

2007-01-01

Surface sediments (0-2 cm) were collected at 40 sites along the Tagus Estuary in July and December 2004. The sediments were analysed for total mercury, monomethylmercury (MMHg) and interpretative parameters (e.g. redox potential, pH, C org ). No significant differences in total Hg, pH, Al, Fe, Mn and C org were found between sediments collected in the two periods, but MMHg concentrations were higher in July. On average sediments were warmer and more reducing in summer. On the basis of these results, an increase of 7 kg of MMHg (+37%) in surface sediments of the Tagus Estuary was estimated. Presumably higher temperatures in summer promote the increase of microbial activity and higher methylation rates. The alterations observed in this study point to the potential importance of seasonal changes in MMHg production at surface sediments with eventual changes in the MMHg uptake by benthic invertebrates and other organisms in the food web. - Seasonal changes in monomethylmercury production in sediments may increase its uptake by benthic invertebrates and other organisms in the food web

Variation partitioning of diatom species data matrices: Understanding the influence of multiple factors on benthic diatom communities in tropical streams

Energy Technology Data Exchange (ETDEWEB)

Bere, Taurai, E-mail: tbere2015@gmail.com; Mangadze, Tinotenda; Mwedzi, Tongai

2016-10-01

Elucidating the confounding influence of multiple environmental factors on benthic diatom communities is important in developing water quality predictive models for better guidance of stream management efforts. The objective of this study was to explore the relative impact of metal pollution and hydromorphological alterations in, addition to nutrient enrichment and organic pollution, on diatom taxonomic composition with the view to improve stream diatom-based water quality inference models. Samples were collected twice at 20 sampling stations in the tropical Manyame Catchment, Zimbabwe. Diatom, macroinvertebrate communities and environmental factors were sampled and analysed. The variations in diatom community composition explained by different categories of environmental factors were analysed using canonical correspondence analysis using variance partitioning (partial CCA). The following variations were explained by the different predictor matrices: nutrient levels and organic pollution - 10.4%, metal pollution - 8.3% and hydromorphological factors - 7.9%. Thus, factors other than nutrient levels and organic pollution explain additional significant variation in these diatom communities. Development of diatom-based stream water quality inference models that incorporate metal pollution and hydromorphological alterations, where these are key issues, is thus deemed necessary. - Highlights: • Confounding influences of multiple environmental factors on diatom communities are elucidated. • Variation explained: nutrients + organic pollution - 10.4%, metals - 8.3% and hydromorphological factors - 7.9%. • Calibration of existing or development of new indices may be necessary.

Variation partitioning of diatom species data matrices: Understanding the influence of multiple factors on benthic diatom communities in tropical streams

International Nuclear Information System (INIS)

Bere, Taurai; Mangadze, Tinotenda; Mwedzi, Tongai

2016-01-01

Elucidating the confounding influence of multiple environmental factors on benthic diatom communities is important in developing water quality predictive models for better guidance of stream management efforts. The objective of this study was to explore the relative impact of metal pollution and hydromorphological alterations in, addition to nutrient enrichment and organic pollution, on diatom taxonomic composition with the view to improve stream diatom-based water quality inference models. Samples were collected twice at 20 sampling stations in the tropical Manyame Catchment, Zimbabwe. Diatom, macroinvertebrate communities and environmental factors were sampled and analysed. The variations in diatom community composition explained by different categories of environmental factors were analysed using canonical correspondence analysis using variance partitioning (partial CCA). The following variations were explained by the different predictor matrices: nutrient levels and organic pollution - 10.4%, metal pollution - 8.3% and hydromorphological factors - 7.9%. Thus, factors other than nutrient levels and organic pollution explain additional significant variation in these diatom communities. Development of diatom-based stream water quality inference models that incorporate metal pollution and hydromorphological alterations, where these are key issues, is thus deemed necessary. - Highlights: • Confounding influences of multiple environmental factors on diatom communities are elucidated. • Variation explained: nutrients + organic pollution - 10.4%, metals - 8.3% and hydromorphological factors - 7.9%. • Calibration of existing or development of new indices may be necessary.

Diatoms as a fingerprint of sub-catchment contributions to meso-scale catchment runoff

Science.gov (United States)

Klaus, Julian; Wetzel, Carlos E.; Martinez-Carreras, Nuria; Ector, Luc; Pfister, Laurent

2014-05-01

In recent years, calls were made for new eco-hydrological approaches to improve understanding of hydrological processes. Recently diatoms, one of the most common and diverse algal groups that can be easily transported by flowing water due to their small size (~10-200 µm), were used to detect the onset and cessation of surface runoff to small headwater streams and constrain isotopic and hydro-chemical hydrograph separation methods. While the method showed its potential in the hillslope-riparian zone-stream continuum of headwater catchments, the behavior of diatoms and their use for hydrological process research in meso-scale catchments remains uncertain. Diatoms can be a valuable support for isotope and hydro-chemical tracer methods when these become ambiguous with increasing scale. Distribution and abundance of diatom species is controlled by various environmental factors (pH, soil type, moisture conditions, exposition to sunlight, etc.). We therefore hypothesize that species abundance and composition can be used as a proxy for source areas. This presentation evaluates the potential for diatoms to trace source-areas in the nested meso-scale Attert River basin (250 km2, Luxembourg, Europe). We sampled diatom populations in streamwater during one flood event in Fall 2011 in 6 sub-catchments and the basin outlet - 17 to 28 samples/catchment for the different sampling locations. Diatoms were classified and counted in every individual sample. In total more than 400 diatom species were detected. Ordination analysis revealed a clear distinction between communities sampled in different sub-catchments. The species composition at the catchment outlet reflects a mixing of the diatom composition originating from different sub-catchments. This data suggests that diatoms indeed can reflect the geographic origin of stream water at the catchment outlet. The centroids of the ordination analysis might be linked to the physiographic characteristics (geology and land use) of the

Local controls on sediment accumulation and distribution in a fjord in the West Antarctic Peninsula: implications for palaeoenvironmental interpretations

Directory of Open Access Journals (Sweden)

Yuribia P. Munoz

2016-08-01

Full Text Available We analyse surface sediment and its distribution in Flandres Bay, West Antarctic Peninsula, in order to understand modern day sediment dispersal patterns in a fjord with retreating, tidewater glaciers. The surface sediment descriptions of 41 cores are included in this study. The sediment facies described include muddy diatomaceous ooze, diatomaceous mud, pebbly mud, sandy mud and mud, with scattered pebbles present in most samples. In contrast to a traditional conceptual model of glacial sediment distribution in fjords, grain size in Flandres Bay generally coarsens from the inner to outer bay. The smallest grain size sediments were found in the bay head and are interpreted as fine-grained deposits resulting from meltwater plumes and sediment gravity flows occurring close to the glacier front. The middle of the bay is characterized by a high silt percentage, which correlates to diatom-rich sediments. Sediments in the outer bay have a high component of coarse material, which is interpreted as being the result of winnowing from currents moving from the Bellingshausen Sea into the Gerlache Strait. Palaeoenvironmental reconstructions of glacial environments often use grain size as an indicator of proximity to the ice margin. After a detailed analysis of a large number of cores collected in the study area, our findings highlight the variability in sedimentation patterns within a fjord and provide a valuable evidence of the complexity that may occur in the sedimentary record.

Diatom genomics: genetic acquisitions and mergers.

Science.gov (United States)

Nisbet, R Ellen R; Kilian, Oliver; McFadden, Geoffrey I

2004-12-29

Diatom algae arose by two-step endosymbiosis. The complete genome of the diatom Thalassiosira pseudonana has now been sequenced, allowing us to reconstruct the remarkable intracellular gene transfers that occurred during this convoluted cellular evolution.

Effect of high sedimentation rates on surface sediment dynamics and mangrove growth in the Porong River, Indonesia.

Science.gov (United States)

Sidik, Frida; Neil, David; Lovelock, Catherine E

2016-06-15

Large quantities of mud from the LUSI (Lumpur Sidoarjo) volcano in northeastern Java have been channeled to the sea causing high rates of sediment delivery to the mouth of the Porong River, which has a cover of natural and planted mangroves. This study investigated how the high rates of sediment delivery affected vertical accretion, surface elevation change and the growth of Avicennia sp., the dominant mangrove species in the region. During our observations in 2010-2011 (4-5years after the initial volcanic eruption), very high rates of sedimentation in the forests at the mouth of the river gave rise to high vertical accretion of over 10cmy(-1). The high sedimentation rates not only resulted in reduced growth of Avicennia sp. mangrove trees at the two study sites at the Porong River mouth, but also gave rise to high soil surface elevation gains. Copyright © 2016 Elsevier Ltd. All rights reserved.

Extractable organics in surface sediments from Thana creek and Bombay harbour

Digital Repository Service at National Institute of Oceanography (India)

Rokade, M.A.; Bhosle, N.B.; Kadam, A.N.

Considerable variations in hydrocarbon and fatty acid levels in surface sediments from Thana creek and Bombay harbour were observed Sediments from the westernside nearshore locations yielded higher values The residues were characterised by infrared...

Effects of engineered nano-titanium dioxide on pore surface properties and phosphorus adsorption of sediment: Its environmental implications

International Nuclear Information System (INIS)

Luo, Zhuanxi; Wang, Zhenhong; Wei, QunShan; Yan, Changzhou; Liu, Feng

2011-01-01

Highlights: → The attachment of Enano-TiO 2 to surface enhanced markedly sediment BET surface area and t-Plot external surface area. → The fill of Enano-TiO 2 into the micropores reduced significantly the sediment t-Plot micropore surface area. → Enano-TiO 2 could increase sediment phosphorus (P) adsorption maximum and decrease in sediment P binding energy. → P would be easily released because of the decreasing P binding energy of the sediment with elevated Enano-TiO 2 . - Abstract: Understanding the environmental safety and human health implications of engineered nanoparticles (ENPs) is of worldwide importance. As an important ENPs, engineered nano-TiO 2 (Enano-TiO 2 ) may have been substantially deposited in aquatic sediments because of its widely uses. Sediment pore surface properties would be thus significantly influenced due to the large surface area of Enano-TiO 2 . In this study, Enano-TiO 2 was found to greatly impact on sediment pore surface properties. The attachment of Enano-TiO 2 particles to sediment surfaces enhanced markedly BET specific surface area and t-Plot external specific surface area, and thereby increased sediment phosphorus (P) adsorption maximum (S max ). Contrarily, the fill of Enano-TiO 2 particles into the micropores of sediments could significantly reduce t-Plot micropore specific surface area, and cause slight decrease in sediment P binding energy (K). Clearly, P sorbed in sediment would be easily released because of the decreasing P binding energy of the sediment with elevated Enano-TiO 2 . Enano-TiO 2 would thus cause aggravated endogenous pollution in water if such sediment was re-suspended on disturbance. The results obtained in this study contribute to our increasing knowledge of how to regulate physicochemical behavior of pollutants in sediments under the influences of Enano-TiO 2 and/or similar ENPs.

Do diatoms percolate through soil and can they be used for tracing the origin of runoff?

Science.gov (United States)

De Graaf, Lenka; Cammeraat, Erik; Pfister, Laurent; Wetzel, Carlos; Klaus, Julian; Hissler, Christophe

2015-04-01

Tracers are widely used to study the movement of water in a catchment. Because of depletion of scientific possibilities with most common tracer types, we proposed the use of diatoms as a natural tracer. Paradoxical results on the contribution of surface runoff to the storm hydrograph were obtained in pioneer research on this idea. Diatom transport via the subsurface flow to the stream would explain this paradox. Prerequisite for this is vertical transport of diatoms through soils, which is the topic of this study. Emphasis is on percolation behavior (speed of percolation, speed of percolation over time, and species distribution) of Pseudostaurosira sp. and Melosira sp. (Bacillariophyceae) through undisturbed soil columns of contrasting substrates. Co-objective is to study the flowpaths of water through the soil columns. Natural undisturbed soil columns were sampled in the Attert basin (Luxembourg) on schist, marl and sandstone substrates. Rain simulation experiments were performed to study vertical diatom transport. Rhodamine dye experiments were carried out to gain insight in the active flowpaths of water, and breakthrough experiments were performed to study the responses of the soil columns to applied water. Diatoms were transported through the soil columns of the three substrates. A vast majority of diatom percolation took place within the first 15 minutes, percolation hereafter was marginal but nevertheless present. Peaks in diatom percolation corresponded with a high flux caused by the addition of the diatom culture, but seepage of diatoms along the sides is unlikely according to the species distribution and the rhodamine dye experiment. Pseudostaurosira sp. percolated significantly better than Melosira sp. Significantly more diatoms percolated through the marl columns compared to the schist columns and variance within the sandstone group was very high. Absolute differences between substrates however, were marginal. Most preferential flowpaths were observed in

Coupled states approximation for scattering of two diatoms

International Nuclear Information System (INIS)

Heil, T.G.; Green, S.; Kouri, D.J.

1978-01-01

The coupled states (CS) approximation is developed in detail for the general case of two colliding diatomic molecules. The high energy limit of the exact Lippmann-Schwinger equation is used to obtain the CS equations so that the sufficiency conditions of Kouri, Heil, and Shimoni apply. In addition, care is taken to ensure correct treatment of parity in the CS, as well as correct labeling of the CS by an effective orbital angular momentum. The analysis follows that given by Shimoni and Kouri for atom-diatom collisions where the coupled rotor angular momentum j 12 and projection lambda 12 replace the single diatom angular momentum j and projection lambda. The result is an expression for the differential scattering amplitude which is a generalization of the highly successful McGuire-Kouri differential scattering amplitude for atom-diatom collisions. Also, the opacity function is found to be a generalization of the Clebsch-Gordon weight atom-diatom expression of Shimoni and Kouri. The diatom-diatom CS body frame T matrix T/sup J/(j 1 'j 2 'j 12 'lambda 12 'vertical-bar j 1 j 2 j 12 lambda 12 ) is also found to be nondiagonal in lambda' 12 ,lambda 12 , just as in the atom-diatom case. The parity and identical molecule interchange symmetries are also considered in detail in both the exact close coupling and CS approximations. Symmetrized expressions for all relevant quantities are obtained, along with the symmetrized coupled equations one must solve. The properly labeled and symmetrized CS equations have not been derived before this present work. The present correctly labeled CS theory is tested computationally by applications to three different diatom-diatom potentials. First we carry out calculations for para-para, ortho-ortho, and ortho-para H 2 -H 2 collisions using the experimental potential of Farrar and Lee

Effect of chlorination on the development of marine biofilms dominated by diatoms

Digital Repository Service at National Institute of Oceanography (India)

Patil, J.S.; Jagadeesan, V.

, and Thalassionema did not increase in density after chlorine treatment. It was also demonstrated that diatoms can colonize, grow and photosynthesize on chlorine-treated surfaces. Under pulse chlorination (treatment every 6 h), irrespective of chlorine concentration...

Summer Epiphytic Diatoms from Terra Nova Bay and Cape Evans (Ross Sea, Antarctica) - A Synthesis and Final Conclusions

Science.gov (United States)

Majewska, Roksana; Convey, Peter; De Stefano, Mario

2016-01-01

Despite recent advances in polar marine biology and related fields, many aspects of the ecological interactions that are crucial for the functioning of Antarctic shallow water habitats remain poorly understood. Although epiphytic diatoms play an essential role in the Antarctic marine food web, basic information regarding their ecology, biodiversity and biogeography is largely unavailable. Here, we synthesise studies on Ross Sea epiphytic diatoms collected during 11 summer Antarctic expeditions between the years 1989/90 and 2011/12, presenting a full list of diatom taxa associated with three macroalgal species (Iridaea cordata, Phyllophora antarctica, and Plocamium cartilagineum) and their epiphytic sessile fauna. Diatom communities found during the three summer months at various depths and sampling stations differed significantly in terms of species composition, growth form structure and abundances. Densities ranged from 21 to >8000 cells mm-2, and were significantly higher on the surface of epiphytic micro-fauna than on any of the macroalgal species examined. Generally, host organisms characterized by higher morphological heterogeneity (sessile microfauna, ramified Plocamium) supported richer diatom communities than those with more uniform surfaces (Iridaea). Differences between epiphytic communities associated with different macroalgae were reflected better in species composition than in growth form structure. The latter changed significantly with season, which was related strongly to the changing ice conditions. A general trend towards an increasing number of erect forms in deeper waters and tube-dwelling diatoms in the shallowest sites (2–5 m) was also observed. This study explores further important and largely previously unknown aspects of relationships and interactions between Antarctic epiphytic diatoms and their micro- and macro-environments. PMID:27078637

Anaerobic Nitrogen Turnover by Sinking Diatom Aggregates at Varying Ambient Oxygen Levels

Directory of Open Access Journals (Sweden)

Peter eStief

2016-02-01

Full Text Available In the world’s oceans, even relatively low oxygen (O2 levels inhibit anaerobic nitrogen cycling by free-living microbes. Sinking organic aggregates, however, might provide oxygen-depleted microbial hotspots in otherwise oxygenated surface waters. Here we show that sinking diatom aggregates can host anaerobic nitrogen cycling at ambient O2 levels well above the hypoxic threshold. Aggregates were produced from the ubiquitous diatom Skeletonema marinoi and the natural microbial community of seawater. Microsensor profiling through the center of sinking aggregates revealed internal anoxia at ambient 40% air saturation (~100 µmol O2 L-1 and below. Accordingly, anaerobic nitrate turnover inside the aggregates was evident within this range of ambient O2 levels. In incubations with 15N-labeled nitrate, individual Skeletonema aggregates produced NO2- (up to 10.7 nmol N h-1 per aggregate, N2 (up to 7.1 nmol N h-1, NH4+ (up to 2.0 nmol N h-1, and N2O (up to 0.2 nmol N h-1. Intriguingly, nitrate stored inside the diatom cells served as an additional, internal nitrate source for N2 production, which may partially uncouple anaerobic nitrate turnover by diatom aggregates from direct ambient nitrate supply. Sinking diatom aggregates can contribute directly to fixed-nitrogen loss in low-oxygen environments in the ocean and vastly expand the ocean volume in which anaerobic nitrogen turnover is possible, despite relatively high ambient O2 levels. Depending on the extent of intracellular nitrate consumption during the sinking process, diatom aggregates may also be involved in the long-distance export of nitrate to the deep ocean.

Microphytobenthos in ecotoxicology: a review of the use of marine benthic diatoms in bioassays.

Science.gov (United States)

Araújo, Cristiano V M; Blasco, Julián; Moreno-Garrido, Ignacio

2010-08-01

Contamination in coastal zones is an increasing problem that adversely affects biological diversity and the functioning of coastal ecosystems. Sediment is an important compartment of these zones since large quantities of diverse contaminants can accumulate there. Whole-sediment toxicity assays are of increasing importance, and several assay methods using mainly invertebrates have been developed. However, an important part of the benthic community, the microphytobenthos (represented principally by benthic diatoms and cyanobacteria), has surprisingly been neglected. Recently, comprehensive studies have been conducted using benthic marine microalgae with the object of establishing a toxicity assay method for sediment samples. The main results published to date in the literature and obtained by our own team have been compiled and are discussed in this review. The value and feasibility of using certain organisms of the microphytobenthos group in ecotoxicology studies are also discussed, and a sediment quality guideline based on multivariate procedure has been derived from data obtained in previous studies. Finally, future perspectives for research in this field are discussed. Copyright 2010 Elsevier Ltd. All rights reserved.

Distribution of 137Cs in surface seawater and sediment around Sabahs Sulu-Sulawesi Sea

International Nuclear Information System (INIS)

Mohd Izwan Abdul Aziz; Ahmad Sanadi Abu Bakar; Yii, Mei Wo; Nurrul Assyikeen Jaffary; Zaharudin Ahmad

2010-01-01

The studies on distribution of 137 Cs in surface seawater and sediment around Sabahs Sulu-Sulawesi Sea were carried out during Ekspedisi Pelayaran Saintifik Perdana (EPSP) in July 2009. About sixteen and twenty five sampling locations were identified for surface seawater and sediment respectively in Sabahs Sulu-Sulawesi Sea. Large volumes of seawater samples are collected and co-precipitation technique was employed to concentrate cesium content before known amounts of 134 Cs tracer were added as yield determinant. Grab sampler were used to collect surface sediment sample. The caesium precipitate and sediment were dried and finely ground before counted using gamma-ray spectrometry system at 661 keV. The activity of 137 Cs was found in surface seawater and sediment to be in the range 1.73 Bq/ m 3 to 5.50 Bq/ m 3 and 1.15 Bq/ kg to 4.53 Bq/ kg respectively. (author)

Sediment size of surface floodplain sediments along a large lowland river

Science.gov (United States)

Swanson, K. M.; Day, G.; Dietrich, W. E.

2007-12-01

Data on size distribution of surface sediment across a floodplain should place important constraints of modeling of floodplain deposition. Diffusive or advective models would predict that, generally, grain size should decrease away from channel banks. Variations in grain size downstream along floodplains may depend on downstream fining of river bed material, exchange rate with river banks and net deposition onto the floodplain. Here we report detailed grain size analyses taken from 17 floodplain transects along 450 km (along channel distance) reach of the middle Fly River, Papua New Guinea. Field studies have documented a systematic change in floodplain characteristics downstream from forested, more topographically elevated and topography bounded by an actively shifting mainstem channel to a downstream swamp grass, low elevation topography along which the river meanders are currently stagnant. Frequency and duration of flooding increase downstream. Flooding occurs both by overbank flows and by injections of floodwaters up tributary and tie channels connected to the mainstem. Previous studies show that about 40% of the total discharge of water passes across the floodplain, and, correspondingly, about 40% of the total load is deposited on the plain - decreasing exponentially from channel bank. We find that floodplain sediment is most sandy at the channel bank. Grain size rapidly declines away from the bank, but surprisingly two trends were also observed. A relatively short distance from the bank the surface material is finest, but with further distance from the bank (out to greater than 1 km from the 250 m wide channel) clay content decreases and silt content increases. The changes are small but repeated at most of the transects. The second trend is that bank material fines downstream, corresponding to a downstream finding bed material, but once away from the bank, there is a weak tendency for a given distance away from the bank the floodplain surface deposits to

Natural radioactivity assessment of surface sediments in the Yangtze Estuary

International Nuclear Information System (INIS)

Wang, Jinlong; Du, Jinzhou; Bi, Qianqian

2017-01-01

The activities of the natural radionuclides ( 238 U, 232 Th, 226 Ra and 40 K) of the surface sediments in the Yangtze Estuary were determined and used to evaluate radiation hazards in the study area. The of activities of 238 U, 232 Th, 226 Ra and 40 K ranges from 14.1 to 62.3, 26.1 to 71.9, 13.7 to 52.3, and 392 to 898 Bq kg −1 , respectively, which were comparable to values of other regions in China. The activities of 232 Th, 40 K and 226 Ra were clearly different from the global recommended values. The radium equivalent activity was less than the recommended limit of 370 Bq kg −1 ; therefore, the sediment in this area can be safely used for reclamation. The external hazard index values were less than one. The average absorbed gamma dose rate and annual effective dose equivalent values were slightly greater than the world average value. 226 Ra/ 238 U and 232 Th/ 238 U ratios could potentially be applied for tracing sediment source. - Highlights: • The natural radioactivity of surface sediments in the Yangtze Estuary was observed. • The radiological hazards of the sediments are insignificant in this study area. • The ratios of natural radionuclides can potentially be applied for sediment source.

Applications of Diatoms as Potential Microalgae in Nanobiotechnology

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Ahmad Yari Khosroushahi

2012-05-01

Full Text Available Introduction: Diatoms are single cell eukaryotic microalgae, which present in nearly every water habitat make them ideal tools for a wide range of applications such as oil explora­tion, forensic examination, environmental indication, biosilica pattern generation, toxicity testing and eutrophication of aqueous ecosystems. Methods: Essential information on diatoms were reviewed and discussed towards impacts of diatoms on biosynthesis and bioremediation. Results: In this review, we present the recent progress in this century on the application of diatoms in waste degradation, synthesis of biomaterial, biomineraliza­tion, toxicity and toxic effects of mineral elements evaluations. Conclusion: Diatoms can be considered as metal toxicity bioindicators and they can be applied for biomineralization, synthesis of biomaterials, and degradation of wastes.

Heavy metal contamination in surface runoff sediments of the urban area of Vilnius, Lithuania

Directory of Open Access Journals (Sweden)

Gytautas Ignatavičius

2017-02-01

Full Text Available Surface runoff from urbanized territories carries a wide range of pollutants. Sediments in untreated runoff from direct discharge stormwater systems significantly contribute to urban waterway pollution. In this study, heavy metal (Pb, Zn, Cu, Cr, Ba, As and Fe contamination in surface runoff sediments of the urban area of the city of Vilnius was investigated. The surface runoff sediment samples were collected from seven dischargers with the highest volume rate of water flow and concentrations of suspended solids. The geospatial analysis of the distribution of heavy metals shows that there are several active pollution sources supplying the dischargers with contaminated sediments. Most of these areas are located in the central part of the city and in old town with intense traffic. Principal components analysis and t-test results clearly depicted the significantly different chemical compositions of winter and autumn surface sediment samples. The sampling approach and assessment of results provide a useful tool to examine the contamination that is generated in urban areas, distinguish pollution sources and give a better understanding of the importance of permeable surfaces and green areas.

Ecology and Evolution of Diatom-Associated Cyanobacteria Through Genetic Analyses

OpenAIRE

Hilton, Jason Andrew

2014-01-01

Primary production in a large fraction of the surface ocean communities is limited by the availability of nitrogen (N). Heterocyst-forming cyanobacteria associated with diatoms of the genera Hemiaulus, Rhizosolenia, and Chaetoceros can dominate surface communities throughout the global oceans, and are an important source of N to these communities. Additionally, these unique associations are directly linked to a highly efficient carbon export system. In order to study the nature and evolution ...

Effects of engineered nano-titanium dioxide on pore surface properties and phosphorus adsorption of sediment: Its environmental implications

Energy Technology Data Exchange (ETDEWEB)

Luo, Zhuanxi [Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021 (China); Wang, Zhenhong [Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021 (China); Zhangzhou Normal University, Department of Chemistry and Environment Sciences, Zhangzhou 363000 (China); Wei, QunShan [Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021 (China); Yan, Changzhou, E-mail: czyan@iue.ac.cn [Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021 (China); Liu, Feng [Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021 (China)

2011-09-15

Highlights: {yields} The attachment of Enano-TiO{sub 2} to surface enhanced markedly sediment BET surface area and t-Plot external surface area. {yields} The fill of Enano-TiO{sub 2} into the micropores reduced significantly the sediment t-Plot micropore surface area. {yields} Enano-TiO{sub 2} could increase sediment phosphorus (P) adsorption maximum and decrease in sediment P binding energy. {yields} P would be easily released because of the decreasing P binding energy of the sediment with elevated Enano-TiO{sub 2}. - Abstract: Understanding the environmental safety and human health implications of engineered nanoparticles (ENPs) is of worldwide importance. As an important ENPs, engineered nano-TiO{sub 2} (Enano-TiO{sub 2}) may have been substantially deposited in aquatic sediments because of its widely uses. Sediment pore surface properties would be thus significantly influenced due to the large surface area of Enano-TiO{sub 2}. In this study, Enano-TiO{sub 2} was found to greatly impact on sediment pore surface properties. The attachment of Enano-TiO{sub 2} particles to sediment surfaces enhanced markedly BET specific surface area and t-Plot external specific surface area, and thereby increased sediment phosphorus (P) adsorption maximum (S{sub max}). Contrarily, the fill of Enano-TiO{sub 2} particles into the micropores of sediments could significantly reduce t-Plot micropore specific surface area, and cause slight decrease in sediment P binding energy (K). Clearly, P sorbed in sediment would be easily released because of the decreasing P binding energy of the sediment with elevated Enano-TiO{sub 2}. Enano-TiO{sub 2} would thus cause aggravated endogenous pollution in water if such sediment was re-suspended on disturbance. The results obtained in this study contribute to our increasing knowledge of how to regulate physicochemical behavior of pollutants in sediments under the influences of Enano-TiO{sub 2} and/or similar ENPs.

Structure-based optics of centric diatom frustules: modulation of the in vivo light field for efficient diatom photosynthesis.

Science.gov (United States)

Goessling, Johannes W; Su, Yanyan; Cartaxana, Paulo; Maibohm, Christian; Rickelt, Lars F; Trampe, Erik C L; Walby, Sandra L; Wangpraseurt, Daniel; Wu, Xia; Ellegaard, Marianne; Kühl, Michael

2018-07-01

The optical properties of diatom silicate frustules inspire photonics and nanotechnology research. Whether light interaction with the nano-structure of the frustule also affects diatom photosynthesis has remained unclear due to lack of information on frustule optical properties under more natural conditions. Here we demonstrate that the optical properties of the frustule valves in water affect light harvesting and photosynthesis in live cells of centric diatoms (Coscinodiscus granii). Microscale cellular mapping of photosynthesis around localized spot illumination demonstrated optical coupling of chloroplasts to the valve wall. Photonic structures of the three-layered C. granii valve facilitated light redistribution and efficient photosynthesis in cell regions distant from the directly illuminated area. The different porous structure of the two sides of the valve exhibited photon trapping and forward scattering of blue light enhancing photosynthetic active radiation inside the cell. Photonic structures of diatom frustules thus alter the cellular light field with implications on diatom photobiology. © 2018 The Authors. New Phytologist © 2018 New Phytologist Trust.

MICROBIAL DIVERSITY IN SURFACE SEDIMENTS: A COMPARISON OF TWO ESTUARINE CONTINUUMS

Science.gov (United States)

The microbial diversity in estuarine sediments of the Altamaha and Savannah Rivers in Georgia were compared temporally and spatially using phospholipid fatty acid (PLFA) analysis. Surface sediment samples collected along a salinity gradient were also analyzed for ATP, TOC, and C ...

Diatom community structure on in-service cruise ship hulls.

Science.gov (United States)

Hunsucker, Kelli Zargiel; Koka, Abhishek; Lund, Geir; Swain, Geoffrey

2014-10-01

Diatoms are an important component of marine biofilms found on ship hulls. However, there are only a few published studies that describe the presence and abundance of diatoms on ships, and none that relate to modern ship hull coatings. This study investigated the diatom community structure on two in-service cruise ships with the same cruise cycles, one coated with an antifouling (AF) system (copper self-polishing copolymer) and the other coated with a silicone fouling-release (FR) system. Biofilm samples were collected during dry docking from representative areas of the ship and these provided information on the horizontal and vertical zonation of the hull, and intact and damaged coating and niche areas. Diatoms from the genera Achnanthes, Amphora and Navicula were the most common, regardless of horizontal ship zonation and coating type. Other genera were abundant, but their presence was more dependent on the ship zonation and coating type. Samples collected from damaged areas of the hull coating had a similar community composition to undamaged areas, but with higher diatom abundance. Diatom fouling on the niche areas differed from that of the surrounding ship hull and paralleled previous studies that investigated differences in diatom community structure on static and dynamically exposed coatings; niche areas were similar to static immersion and the hull to dynamic immersion. Additionally, diatom richness was greater on the ship with the FR coating, including the identification of several new genera to the biofouling literature, viz. Lampriscus and Thalassiophysa. These results are the first to describe diatom community composition on in-service ship hulls coated with a FR system. This class of coatings appears to have a larger diatom community compared to copper-based AF systems, with new diatom genera that have the ability to stick to ship hulls and withstand hydrodynamic forces, thus creating the potential for new problematic species in the biofilm.

Relationship between diatom communities and environmental ...

African Journals Online (AJOL)

ajl yemi

2011-11-30

Nov 30, 2011 ... The relationship between diatom species and measured environmental variables was explored at different sites of Honghe wetland region located in northeastern China. Planktonic and epiphytic diatom assemblages in the wetland were identified from May to October of 2007 and 2008. Their relationships.

Relationship between diatom communities and environmental ...

African Journals Online (AJOL)

Abstract. The relationship between diatom species and measured environmental variables was explored at different sites of Honghe wetland region located in northeastern China. Planktonic and epiphytic diatom assemblages in the wetland were identified from May to October of 2007 and 2008. Their relationships with ...

Selective silicate-directed motility in diatoms

DEFF Research Database (Denmark)

Bondoc, Karen Grace V.; Heuschele, Jan; Gillard, Jeroen

2016-01-01

the major sink in the global Si cycle. Dissolved silicic acid (dSi) availability frequently limits diatom productivity and influences species composition of communities. We show that benthic diatoms selectively perceive and behaviourally react to gradients of dSi. Cell speed increases under d...

Dynamic diatom response to changing climate 0–1.2 Ma at Lake El'gygytgyn, Far East Russian Arctic

Directory of Open Access Journals (Sweden)

J. A. Snyder

2013-06-01

Full Text Available The Lake El'gygytgyn sediment record contains an abundant diatom flora through most intervals of the lake's history, providing a means to create and test hypotheses concerning the lake's response to changing climates. The 0–1.2 Ma core interval is characterized by shifts in the dominant planktonic genera and events of exceptional concentration and diversity. Warm interglacial intervals have enhanced concentration and diversity of the plankton. This response is most extreme during exceptional events corresponding to marine isotope stages (MIS 11 and 31. Diatom concentration and diversity also increase during some cold intervals (e.g., MIS 2, suggesting conditions of lake circulation and nutrient cycling promoting diatom production during these events. Short intervals of low plankton concentration accompanied by shifts in the dominant genus of the lake suggest conditions during certain cold events generate a severe impact on plankton production. The absence of these events during extended intervals of low summer insolation variability suggests a muted cold-event response of the lake system linked to regional climate.

Copper in the sediment and sea surface microlayer near a fallowed, open-net fish farm.

Science.gov (United States)

Loucks, Ronald H; Smith, Ruth E; Fisher, Clyde V; Fisher, E Brian

2012-09-01

Sediment and sea surface microlayer samples near an open-net salmon farm in Nova Scotia, were analysed for copper. Copper is a constituent of the feed and is an active ingredient of anti-foulants. The salmon farm was placed in fallow after 15 years of production. Sampling was pursued over 27 months. Elevated copper concentrations in the sediments indicated the farm site as a source. Bubble flotation due to gas-emitting sediments from eutrophication is a likely process for accumulating copper in the sea surface microlayer at enriched concentrations. Elevated and enriched concentrations in the sea surface microlayer over distance from the farm site led, as a result of wind-drift, to an enlarged farm footprint. The levels of copper in both sediments and sea surface microlayer exceeded guidelines for protection of marine life. Over the 27 months period, copper levels persisted in the sediments and decreased gradually in the sea surface microlayer. Copyright © 2012 Elsevier Ltd. All rights reserved.

Computation of diatomic molecular spectra for selected transitions of aluminum monoxide, cyanide, diatomic carbon, and titanium monoxide

Energy Technology Data Exchange (ETDEWEB)

Parigger, Christian G., E-mail: cparigge@tennessee.edu [The University of Tennessee/University of Tennessee Space Institute, Center for Laser Applications, 411 B.H. Goethert Parkway, Tullahoma, TN 37388-9700 (United States); Woods, Alexander C.; Surmick, David M.; Gautam, Ghaneshwar; Witte, Michael J. [The University of Tennessee/University of Tennessee Space Institute, Center for Laser Applications, 411 B.H. Goethert Parkway, Tullahoma, TN 37388-9700 (United States); Hornkohl, James O. [Hornkohl Consulting, Tullahoma, TN 37388 (United States)

2015-05-01

Laser ablation studies with laser-induced breakdown spectroscopy (LIBS) typically emphasize atomic species yet fingerprints from molecular species can occur subsequently or concurrently. In this work, selected molecular transitions of aluminum monixide (AlO), diatomic carbon (C{sub 2}), cyanide (CN), and titanium monoxide (TiO) are accurately computed. Line strength tables are used to describe the radiative transitions of diatomic molecules primarily in the visible, optical region. Details are elaborated of the computational procedure that allows one to utilize diatomic spectra as a predictive and as a diagnostic tool. In order to create a computed spectrum, the procedure requires information regarding the temperature of the diatomic transitions along with other input such as the spectral resolution. When combined with a fitting algorithm to optimize such parameters, this procedure is used to infer information from an experimentally obtained spectrum. Furthermore, the programs and data files are provided for LIBS investigations that also reveal AlO, C{sub 2}, CN, and TiO diatomic spectra. - Highlights: • We present a program for fitting of molecular spectra. • This includes data base for AlO, C{sub 2}, CN, and TiO. • We discuss the details of the program including fitting. • We show computed examples and reference current work.

Identifying community thresholds for lotic benthic diatoms in response to human disturbance.

Science.gov (United States)

Tang, Tao; Tang, Ting; Tan, Lu; Gu, Yuan; Jiang, Wanxiang; Cai, Qinghua

2017-06-23

Although human disturbance indirectly influences lotic assemblages through modifying physical and chemical conditions, identifying thresholds of human disturbance would provide direct evidence for preventing anthropogenic degradation of biological conditions. In the present study, we used data obtained from tributaries of the Three Gorges Reservoir in China to detect effects of human disturbance on streams and to identify disturbance thresholds for benthic diatoms. Diatom species composition was significantly affected by three in-stream stressors including TP, TN and pH. Diatoms were also influenced by watershed % farmland and natural environmental variables. Considering three in-stream stressors, TP was positively influenced by % farmland and % impervious surface area (ISA). In contrast, TN and pH were principally affected by natural environmental variables. Among measured natural environmental variables, average annual air temperature, average annual precipitation, and topsoil % CaCO 3 , % gravel, and total exchangeable bases had significant effects on study streams. When effects of natural variables were accounted for, substantial compositional changes in diatoms occurred when farmland or ISA land use exceeded 25% or 0.3%, respectively. Our study demonstrated the rationale for identifying thresholds of human disturbance for lotic assemblages and addressed the importance of accounting for effects of natural factors for accurate disturbance thresholds.

9 Records of Diatoms and Physicochemical.cdr

African Journals Online (AJOL)

Administrator

between some physicochemical parameters and diatom species in these ponds. ..... Diversity and relative abundance (%) of diatoms species in selected seasonal ponds in Zaria, Nigeria ..... connection with reference conditions of the water.

Total mercury concentrations in surface water and sediments from Danube Delta lakes

Directory of Open Access Journals (Sweden)

TEODOROF Liliana

2007-10-01

Full Text Available The samples were collected from surface water and sediments of Danube Delta lakes, during april and may 2006. The sediments were digested with nitric acid, and the surface water with real aqua, at Microwave Oven Anton Paar and analised at FIMS 400 Perkin Elmer. The results show that the total mercury is compared with the maximum allowed limits according with Normative 161/2006.

Environmental and geochemical assessment of surface sediments on irshansk ilmenite deposit area

Directory of Open Access Journals (Sweden)

Наталия Олеговна Крюченко

2015-03-01

Full Text Available It is revealed the problem of pollution of surface sediments of Irshansk ilmenite deposit area of various chemical elements hazard class (Mn, V, Ba, Ni, Co, Cr, Mo, Cu, Pb, Zn. It is determined its average content in surface sediments of various functional areas (forest and agricultural land, flood deposits, reclaimed land, calculated geochemical criteria, so given ecological and geochemical assessment of area

A diatom record of CO2 decline since the late Miocene

Science.gov (United States)

Mejía, Luz María; Méndez-Vicente, Ana; Abrevaya, Lorena; Lawrence, Kira T.; Ladlow, Caroline; Bolton, Clara; Cacho, Isabel; Stoll, Heather

2017-12-01

Extratropical sea surface temperature records from alkenones record a dramatic cooling of up to 17 °C over the last ∼14 Ma, but the relationship between this cooling and greenhouse gas forcing has been elusive due to sparse and contrasting reconstructions of atmospheric CO2 for the time period. Alkenone carbon isotopic fractionation during photosynthesis has previously been used to estimate changes in pCO2 over this interval, but is complicated by significant changes in cell size of the alkenone-producing coccolithophorids over this time period. In this study, we reconstruct carbon isotopic fractionation during photosynthesis (εp) using organic compounds trapped within the frustules of pennate diatoms in sediments from the Eastern Equatorial Pacific Ocean at Ocean Drilling Program Site 846 over the last ∼13 Ma. Physical separation of pennate diatoms prior to measuring carbon isotopic fractionation enables us to obtain a record with constant cell geometry, eliminating this factor of uncertainty in our pCO2 reconstruction. In the past ∼11 Ma, εp declines from 15.5 to 10.3‰. Using the classic diffusive model and taking into account variations in opal content, alkenone concentration and coccolith Sr/Ca as indicators of past productivity and growth rate, and sea surface temperature records from the site, we estimate a decline in pCO2 from 454 (+ / - 41) to 250 (+ / - 15) ppmv between ∼11 and 6 Ma. Models accounting for changing the significance of active carbon uptake for photosynthesis, which likely produce more accurate CO2 estimates, suggest a significant larger pCO2 decline of up to twice that shown by the classic diffusive model (in average from 794 (+ / - 233) ppmv at ∼11 Ma to 288 (+/-25) ppmv at ∼6 Ma, considering growth rates varying between 0.5 and 1.7 day-1). Large uncertainties in the pCO2 estimated between ∼8 and 11 Ma using the active uptake model are related to the growth rate used for calculations. Together, these results suggest CO2

The effect of antibiotics on diatom communities

Digital Repository Service at National Institute of Oceanography (India)

DeCosta, P.M.; Anil, A.C.

Effect of antibiotics (penicillin (P), streptomycin (S) and chloramphenicol (C)) on benthic diatom communities was evaluated using a modified extinction–dilution method. The high antibiotic combinations (2PSC and PSC) reduced diatoms by 99...

Fabrication of insulator nanocapillaries from diatoms

International Nuclear Information System (INIS)

Bereczky, R.J.; Tokesi, K.

2006-01-01

Complete text of publication follows. Diatoms are unicellular microscopic organisms with silicon-dioxide based skeleton enveloped with an organic material, which composes essentially polysaccharides and proteins (see Fig. 1a.). As it was shown, the valva of the diatoms build up almost from clean silicondioxide [1]. Therefore, removing the organic compounds from the diatom, we can have in our hand an ideal, about 100 μ m-sized, and almost cylindrical shaped insulating nanostructure. There are various techniques available to disembarrass the diatom from its organic compounds. We used the so called hydrogen peroxide method. The advantageous properties of this method are the followings: a) this is one of the fastest procedures among the possible methods, b) do not require special equipment, c) cheap, and last but not least it is less harmful for health compared to other methods. This procedure can be an alternative way of the fabrication of insulator nanocapillaries. In this case the preparation of the nanocapillaries is simple and quick. Moreover, we do not need to invest expensive special techniques, (like micromachining-, electrochemical etching technique, moulding process etc) as it was necessary for the case of previously developed method producing insulator nanocapillaries [2,3]. Fig. 1b and Fig. 1c. show the scanning electron micrograph of the skeleton of the diatoms. The size of the cylindrical holes are roughly 200 nm (see Fig. 1c). (author)

Microplastics Baseline Surveys at the Water Surface and in Sediments of the North-East Atlantic

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Thomas Maes

2017-05-01

Full Text Available Microplastic contamination was determined in sediments of the Southern North Sea and floating at the sea surface of North West Europe. Floating concentrations ranged between 0 and 1.5 microplastic/m3, whereas microplastic concentrations in sediments ranged between 0 and 3,146 particles/kg dry weight sediment. In sediments, mainly fibers and spheres were found, whereas at the sea surface fragments were dominant. At the sea surface, concentrations of microplastics are lower and more variable than in sediments, meaning that larger sample sizes and water volumes are required to find detectable concentrations. We have calculated the widths of the confidence intervals (CI for different sample sizes, to give a first indication of the necessary sample size for a microplastic survey at the water surface. Higher concentrations of floating microplastics were found near estuaries. In sediments, estuaries and areas with a high organic carbon content were likely hotspots. Standardization of monitoring methods within marine regions is recommended to compare and assess microplastics pollution over time.

Current trends to comprehend lipid metabolism in diatoms.

Science.gov (United States)

Zulu, Nodumo Nokulunga; Zienkiewicz, Krzysztof; Vollheyde, Katharina; Feussner, Ivo

2018-04-01

Diatoms are the most dominant phytoplankton species in oceans and they continue to receive a great deal of attention because of their significant contributions in ecosystems and the environment. Due to triacylglycerol (TAG) profiles that are abundant in medium-chain fatty acids, diatoms have emerged to be better feed stocks for biofuel production, in comparison to the commonly studied green microalgal species (chlorophytes). Importantly, diatoms are also known for their high levels of the essential ω3 fatty acids, eicosapentaenoic acid (EPA) and docosahexaenoic acid (DHA) and are considered to be a promising alternative source of these components. The two most commonly exploited diatoms include Thalassiosira pseudonana and Phaeodactylum tricornutum. Although obvious similarities between diatoms and chlorophytes exist, there are some substantial differences in their lipid metabolism. This review provides an overview on lipid metabolism in diatoms, with P. tricornutum as the most explored model. Special emphasis is placed on the synthesis and incorporation of very long chain ω3 fatty acids into lipids. Furthermore, current approaches including genetic engineering and biotechnological methods aimed at improving and maximizing lipid production in P. tricornutum are also discussed. Copyright © 2018 The Authors. Published by Elsevier Ltd.. All rights reserved.

UPWARD MOVEMENT OF PLUTONIUM TO SURFACE SEDIMENTS DURING AN 11-YEAR FIELD STUDY

Energy Technology Data Exchange (ETDEWEB)

Kaplan, D.; Beals, D.; Cadieux, J.; Halverson, J.

2010-01-25

An 11-y lysimeter study was established to monitor the movement of Pu through vadose zone sediments. Sediment Pu concentrations as a function of depth indicated that some Pu moved upward from the buried source material. Subsequent numerical modeling suggested that the upward movement was largely the result of invading grasses taking up the Pu and translocating it upward. The objective of this study was to determine if the Pu of surface sediments originated from atmosphere fallout or from the buried lysimeter source material (weapons-grade Pu), providing additional evidence that plants were involved in the upward migration of Pu. The {sup 240}Pu/{sup 239}Pu and {sup 242}Pu/{sup 239}Pu atomic fraction ratios of the lysimeter surface sediments, as determined by Thermal Ionization Mass Spectroscopy (TIMS), were 0.063 and 0.00045, respectively; consistent with the signatures of the weapons-grade Pu. Our numerical simulations indicate that because plants create a large water flux, small concentrations over multiple years may result in a measurable accumulation of Pu on the ground surface. These results may have implications on the conceptual model for calculating risk associated with long-term stewardship and monitored natural attenuation management of Pu contaminated subsurface and surface sediments.

LABORATORY STRATEGIES FOR HYDRATE FORMATION IN FINE-GRAINED SEDIMENTS

KAUST Repository

Lei, L.; Santamarina, Carlos

2018-01-01

Fine‐grained sediments limit hydrate nucleation, shift the phase boundary and hinder gas supply. Laboratory experiments in this study explore different strategies to overcome these challenges, including the use of a more soluble guest molecule rather than methane, grain‐scale gas‐storage within porous diatoms, ice‐to‐hydrate transformation to grow lenses at predefined locations, forced gas injection into water saturated sediments, and long‐term guest molecule transport. Tomographic images, thermal and pressure data provide rich information on hydrate formation and morphology. Results show that hydrate formation is inherently displacive in fine‐grained sediments; lenses are thicker and closer to each other in compressible, high specific surface area sediments subjected to low effective stress. Temperature and pressure trajectories follow a shifted phase boundary that is consistent with capillary effects. Exo‐pore growth results in freshly formed hydrate with a striped and porous structure; this open structure becomes an effective pathway for gas transport to the growing hydrate front. Ice‐to‐hydrate transformation goes through a liquid stage at pre‐melt temperatures; then, capillarity and cryogenic suction compete, and some water becomes imbibed into the sediment faster than hydrate reformation. The geometry of hydrate lenses and the internal hydrate structure continue evolving long after the exothermal response to hydrate formation has completely decayed. Multiple time‐dependent processes occur during hydrate formation, including gas, water and heat transport, sediment compressibility, reaction rate and the stochastic nucleation process. Hydrate formation strategies conceived for this study highlight the inherent difficulties in emulating hydrate formation in fine‐grained sediments within the relatively short time‐scale available for laboratory experiments.

LABORATORY STRATEGIES FOR HYDRATE FORMATION IN FINE-GRAINED SEDIMENTS

KAUST Repository

Lei, L.

2018-04-02

Fine‐grained sediments limit hydrate nucleation, shift the phase boundary and hinder gas supply. Laboratory experiments in this study explore different strategies to overcome these challenges, including the use of a more soluble guest molecule rather than methane, grain‐scale gas‐storage within porous diatoms, ice‐to‐hydrate transformation to grow lenses at predefined locations, forced gas injection into water saturated sediments, and long‐term guest molecule transport. Tomographic images, thermal and pressure data provide rich information on hydrate formation and morphology. Results show that hydrate formation is inherently displacive in fine‐grained sediments; lenses are thicker and closer to each other in compressible, high specific surface area sediments subjected to low effective stress. Temperature and pressure trajectories follow a shifted phase boundary that is consistent with capillary effects. Exo‐pore growth results in freshly formed hydrate with a striped and porous structure; this open structure becomes an effective pathway for gas transport to the growing hydrate front. Ice‐to‐hydrate transformation goes through a liquid stage at pre‐melt temperatures; then, capillarity and cryogenic suction compete, and some water becomes imbibed into the sediment faster than hydrate reformation. The geometry of hydrate lenses and the internal hydrate structure continue evolving long after the exothermal response to hydrate formation has completely decayed. Multiple time‐dependent processes occur during hydrate formation, including gas, water and heat transport, sediment compressibility, reaction rate and the stochastic nucleation process. Hydrate formation strategies conceived for this study highlight the inherent difficulties in emulating hydrate formation in fine‐grained sediments within the relatively short time‐scale available for laboratory experiments.

Spatiotemporal distributions of Fukushima-derived radionuclides in nearby marine surface sediments

Energy Technology Data Exchange (ETDEWEB)

Kusakabe, M.; Oikawa, S.; Takata, H.; Misonoo, J. [Marine Ecology Research Institute, Tokyo (Japan)

2013-07-01

Spatiotemporal distributions of anthropogenic radionuclides in marine surface sediments off Miyagi, Fukushima, and Ibaraki Prefectures were analyzed on the basis of data collected during the monitoring program launched by the Japanese Ministry of Education, Sports, Science and Technology in 2011 right after the Fukushima Dai-ichi Nuclear Power Plant accident began. Concentrations of {sup 137}Cs in the surface sediments varied spatially by two orders of magnitude, from 1.7 to 580 Bq kg-dry{sup -1}, and there was no obvious correlation between {sup 137}Cs concentration and the proximity of the sampling location to the accident site. The total inventory of {sup 137}Cs accumulated in the upper 3 cm of surface sediments in the monitoring area was estimated to be 3.78 x 10{sup 13} Bq, that is, 0.1-2% of the total {sup 137}Cs flux from the plant to the ocean as a result of the accident (the percentage depends on the model used to estimate the total flux). The spatial variations of {sup 137}Cs concentration and inventory depended on two main factors: the {sup 137}Cs concentration in the overlying water during the first several months after the accident and the physical characteristics of the sediments (water content and bulk density). The temporal variations of the concentrations of other anthropogenic radionuclides ({sup 90}Sr, {sup 95}Nb, {sup 110} {sup m}Ag, {sup 125}Sb, {sup 129}Te, and {sup 129} {sup m}Te) in the sediments were also investigated. Activity ratios of these nuclides to {sup 137}Cs suggest that the nuclides themselves were not homogenized before they were removed from seawater to the sediments.

The Association of Cryptosporidium parvum With Suspended Sediments: Implications for Transport in Surface Waters

Science.gov (United States)

Searcy, K. E.; Packman, A. I.; Atwill, E. R.; Harter, T.

2003-12-01

Understanding the transport and fate of microorganisms in surface waters is of vital concern in protecting the integrity and safety of municipal water supply systems. The human pathogen Cryptosporidium parvum is a particular public health interest, as it is ubiquitous in the surface waters of the United States, it can persist for long periods in the environment, and it is difficult to disinfect in water treatment plants. Due to its small size (5 um), low specific gravity (1.05 g/cm3), and negative surface charge, C. parvum oocysts are generally considered to move through watersheds from their source to drinking water reservoirs with little attenuation. However, the transport of the oocysts in surface waters may be mediated by interactions with suspended sediments. Batch experiments were conducted to determine the extent of C. parvum oocyst attachment to several inorganic and organic sediments under varying water chemical conditions, and settling column experiments were performed to demonstrate how these associations influence the effective settling velocity of C. parvum oocysts. Results from these experiments showed that C. parvum oocysts do associate with inorganic and organic sediments and often settle at the rate of the suspended sediment. The size and surface charge of the host suspended sediment influenced the extent of oocyst attachment as oocysts preferentially associated with particles greater than 3 um, and fewer oocysts associated with particles having a highly negative surface charge. Background water chemical conditions including ionic strength, ion composition, and pH did not have a significant effect on oocyst attachment to suspended sediments.

Picocyanobacteria Dominance in Deep Biomass Layers: Relation to Diatom Presence and Episodic Events.

Science.gov (United States)

Aguilar, C.; Cuhel, R. L.

2016-02-01

In Offshore Marine and Large Lake Waters, most of the biomass and the productivity of phytoplankton occur below surface observation capabilities. Sub-mixed layer phytoplankton populations develop, increase, persist, and decay in relation to physical structure such as pycnocline density gradients interacting with progressively changing light fields. Basin-scale meteorological events and persistence of major invasive species have also left marks on biogeochemical cycling and ecosystem function in Lake Michigan. Among the former are precipitation and turbulence alterations brought on by unusual winter ice cover and a century-scale flood during 2008. Dampened seasonal silicate cycling indicated a basin-wide reduction of diatom production following mussel establishment. Communities in Lake Michigan shifted from diatom and big cell-dominated to small cell picocyanobacteria-dominated phytoplankton. Picocyanobacteria were beneficiaries of profound oligotrophication of the ecosystem starting in 2003. Photosynthetic parameters of pre-2003 Deep Biomass populations dominated by diatoms were systematically different from the cyanobacterial epoch following quagga mussel establishment and increase in depth of 1% incident light to 50-60m. Deep cyanobacterial production has now often been on the same scale as overlying waters. Photophysiology changes in a smooth depth gradient in this clear water as opposed to previous abrupt transition to shade adaptation. Among these many physicochemical permutations, community structure has consistently been a tradeoff between diatoms and picocyanobacteria. Opposing fluctuations of biomass favor one or the other on seasonal time frames of sequential years, with a complete system reset between each (winter mixing). For the Great Flood example, diatom surface blooms increased light extinction and drove the deep biomass maximum up - as populations settled into the pycnocline they had already outcompeted the picocyanobacteria. The opposite was true

Soil, Groundwater, Surface Water, and Sediments of Kennedy Space Center, Florida: Background Chemical and Physical Characteristics

Science.gov (United States)

Shmalzer, Paul A.; Hensley, Melissa A.; Mota, Mario; Hall, Carlton R.; Dunlevy, Colleen A.

2000-01-01

This study documented background chemical composition of soils, groundwater, surface; water, and sediments of Kennedy Space Center. Two hundred soil samples were collected, 20 each in 10 soil classes. Fifty-one groundwater wells were installed in 4 subaquifers of the Surficial Aquifer and sampled; there were 24 shallow, 16 intermediate, and 11 deep wells. Forty surface water and sediment samples were collected in major watershed basins. All samples were away from sites of known contamination. Samples were analyzed for organochlorine pesticides, aroclors, chlorinated herbicides, polycyclic aromatic hydrocarbons (PAH), total metals, and other parameters. All aroclors (6) were below detection in all media. Some organochlorine pesticides were detected at very low frequencies in soil, sediment, and surface water. Chlorinated herbicides were detected at very low frequencies in soil and sediments. PAH occurred in low frequencies in soiL, shallow groundwater, surface water, and sediments. Concentrations of some metals differed among soil classes, with subaquifers and depths, and among watershed basins for surface water but not sediments. Most of the variation in metal concentrations was natural, but agriculture had increased Cr, Cu, Mn, and Zn.

Electron transport through a diatomic molecule

International Nuclear Information System (INIS)

Imran, Muhammad

2014-01-01

Electron transport through a diatomic molecular tunnel junction shows wave like interference phenomenon. By using Keldysh non-equilibrium Green's function (NEGF) theory, we have explicitly presented current and differential conductance calculation for a diatomic molecular and two isolated atoms (two atoms having zero hybridization between their energy orbitals) tunnel junctions. In case of a diatomic molecular tunnel junction, Green's function propagators entering into current and differential conductance formula interfere constructively for a molecular anti-bonding state and destructively for bonding state. Consequently, conductance through a molecular bonding state is suppressed, and to conserve current, conductance through anti-bonding state is enhanced. Therefore, current steps and differential conductance peaks amplitude show asymmetric correspondence between molecular bonding and anti-bonding states. Interestingly, for a diatomic molecule, comprising of two atoms of same energy level, these propagators interfere completely destructively for molecular bonding state and constructively for molecular anti-bonding state. Hence under such condition, a single step or a single peak is shown up in current versus voltage or differential conductance versus voltage studies.

Effects of engineered nano-titanium dioxide on pore surface properties and phosphorus adsorption of sediment: its environmental implications.

Science.gov (United States)

Luo, Zhuanxi; Wang, Zhenhong; Wei, Qunshan; Yan, Changzhou; Liu, Feng

2011-09-15

Understanding the environmental safety and human health implications of engineered nanoparticles (ENPs) is of worldwide importance. As an important ENPs, engineered nano-TiO(2) (Enano-TiO(2)) may have been substantially deposited in aquatic sediments because of its widely uses. Sediment pore surface properties would be thus significantly influenced due to the large surface area of Enano-TiO(2). In this study, Enano-TiO(2) was found to greatly impact on sediment pore surface properties. The attachment of Enano-TiO(2) particles to sediment surfaces enhanced markedly BET specific surface area and t-Plot external specific surface area, and thereby increased sediment phosphorus (P) adsorption maximum (S(max)). Contrarily, the fill of Enano-TiO(2) particles into the micropores of sediments could significantly reduce t-Plot micropore specific surface area, and cause slight decrease in sediment P binding energy (K). Clearly, P sorbed in sediment would be easily released because of the decreasing P binding energy of the sediment with elevated Enano-TiO(2). Enano-TiO(2) would thus cause aggravated endogenous pollution in water if such sediment was re-suspended on disturbance. The results obtained in this study contribute to our increasing knowledge of how to regulate physicochemical behavior of pollutants in sediments under the influences of Enano-TiO(2) and/or similar ENPs. Copyright © 2011 Elsevier B.V. All rights reserved.

Gross Nitrogen Mineralization in Surface Sediments of the Yangtze Estuary

Science.gov (United States)

Liu, Min; Li, Xiaofei; Yin, Guoyu; Zheng, Yanling; Deng, Fengyu

2016-01-01

Nitrogen mineralization is a key biogeochemical process transforming organic nitrogen to inorganic nitrogen in estuarine and coastal sediments. Although sedimentary nitrogen mineralization is an important internal driver for aquatic eutrophication, few studies have investigated sedimentary nitrogen mineralization in these environments. Sediment-slurry incubation experiments combined with 15N isotope dilution technique were conducted to quantify the potential rates of nitrogen mineralization in surface sediments of the Yangtze Estuary. The gross nitrogen mineralization (GNM) rates ranged from 0.02 to 5.13 mg N kg-1 d-1 in surface sediments of the study area. The GNM rates were generally higher in summer than in winter, and the relative high rates were detected mainly at sites near the north branch and frontal edge of this estuary. The spatial and temporal distributions of GNM rates were observed to depend largely on temperature, salinity, sedimentary organic carbon and nitrogen contents, and extracellular enzyme (urease and L-glutaminase) activities. The total mineralized nitrogen in the sediments of the Yangtze Estuary was estimated to be about 6.17 × 105 t N yr-1, and approximately 37% of it was retained in the estuary. Assuming the retained mineralized nitrogen is totally released from the sediments into the water column, which contributed 12–15% of total dissolved inorganic nitrogen (DIN) sources in this study area. This result indicated that the mineralization process is a significant internal nitrogen source for the overlying water of the Yangtze Estuary, and thus may contribute to the estuarine and coastal eutrophication. PMID:26991904

Climatic and lacustrine morphometric controls of diatom paleoproductivity in a tropical Andean lake

Science.gov (United States)

Bao, R.; Hernández, A.; Sáez, A.; Giralt, S.; Prego, R.; Pueyo, J. J.; Moreno, A.; Valero-Garcés, B. L.

2015-12-01

. The subsequent net increase in lake level introduced modifications in the area of the epilimnion sediments versus the total volume of the epilimnion, preventing complete overturn. Surpassing a certain depth threshold at approx. 8300 cal yr BP caused cessation of the morphometric eutrophy conditions associated with Cyclostephanos cf. andinus superblooms. After 7300 cal yr BP, the lake experienced a decrease in biosiliceous productivity and a change of state that involved a stronger dependence on precipitation variability, with a lesser contribution of diatoms to the total primary productivity. Our results show that the interpretation of lacustrine paleoproductivity records as paleoclimatic archives needs to take into account the effects of changes in the epilimnion sediment area to epilimnion volume ratio in association with lake ontogeny.

Applications of Diatoms as Potential Microalgae in Nanobiotechnology

OpenAIRE

Ahmad Yari Khosroushahi; Miguel de la Guardia; Mohamad Moradi Ghorakhlu; Ali Akbar Jamali; Fariba Akbari

2012-01-01

Introduction: Diatoms are single cell eukaryotic microalgae, which present in nearly every water habitat make them ideal tools for a wide range of applications such as oil explora­tion, forensic examination, environmental indication, biosilica pattern generation, toxicity testing and eutrophication of aqueous ecosystems. Methods: Essential information on diatoms were reviewed and discussed towards impacts of diatoms on biosynthesis and bioremediation. Results: In this review, we present the ...

Seasonal variations in fouling diatom communities on the Yantai coast

Science.gov (United States)

Yang, Cuiyun; Wang, Jianhua; Yu, Yang; Liu, Sujing; Xia, Chuanhai

2015-03-01

Fouling diatoms are a main component of biofilm, and play an important role in marine biofouling formation. We investigated seasonal variations in fouling diatom communities that developed on glass slides immersed in seawater, on the Yantai coast, northern Yellow Sea, China, using microscopy and molecular techniques. Studies were conducted during 2012 and 2013 over 3, 7, 14, and 21 days in each season. The abundance of attached diatoms and extracellular polymeric substances increased with exposure time of the slides to seawater. The lowest diatom density appeared in winter and the highest species richness and diversity were found in summer and autumn. Seasonal variation was observed in the structure of fouling diatom communities. Pennate diatoms Cylindrotheca, Nitzschia, Navicula, Amphora, Gomphonema, and Licmophora were the main fouling groups. Cylindrotheca sp. dominated in the spring. Under laboratory culture conditions, we found that Cylindrotheca grew very fast, which might account for the highest density of this diatom in spring. The lower densities in summer and autumn might result from the emergence of fouling animals and environmental factors. The Cylindrotheca sp. was identified as Cylindrotheca closterium using18S rDNA sequencing. The colonization process of fouling diatoms and significant seasonal variation in this study depended on environmental and biological factors. Understanding the basis of fouling diatoms is essential and important for developing new antifouling techniques.

Inorganic carbon availability in benthic diatom communities: photosynthesis and migration.

Science.gov (United States)

Marques da Silva, Jorge; Cruz, Sónia; Cartaxana, Paulo

2017-09-05

Diatom-dominated microphytobenthos (MPB) is the main primary producer of many intertidal and shallow subtidal environments, being therefore of critical importance to estuarine and coastal food webs. Owing to tidal cycles, intertidal MPB diatoms are subjected to environmental conditions far more variable than the ones experienced by pelagic diatoms (e.g. light, temperature, salinity, desiccation and nutrient availability). Nevertheless, benthic diatoms evolved adaptation mechanisms to these harsh conditions, including the capacity to move within steep physical and chemical gradients, allowing them to perform photosynthesis efficiently. In this contribution, we will review present knowledge on the effects of dissolved inorganic carbon (DIC) availability on photosynthesis and productivity of diatom-dominated MPB. We present evidence of carbon limitation of photosynthesis in benthic diatom mats and highly productive MPB natural communities. Furthermore, we hypothesize that active vertical migration of epipelic motile diatoms could overcome local depletion of DIC in the photic layer, providing the cells alternately with light and inorganic carbon supply. The few available longer-term experiments on the effects of inorganic carbon enrichment on the productivity of diatom-dominated MPB have yielded inconsistent results. Therefore, further studies are needed to properly assess the response of MPB communities to increased CO 2 and ocean acidification related to climate change.This article is part of the themed issue 'The peculiar carbon metabolism in diatoms'. © 2017 The Author(s).

The transfer of diatoms from freshwater to footwear materials: An experimental study assessing transfer, persistence, and extraction methods for forensic reconstruction.

Science.gov (United States)

Levin, E A; Morgan, R M; Scott, K R; Jones, V J

2017-09-01

In recent years there has been growing interest in environmental forms of trace evidence, and ecological trace evidence collected from footwear has proved valuable within casework. Simultaneously, there has been growing awareness of the need for empirical experimentation to underpin forensic inferences. Diatoms are unicellular algae, and each cell (or 'frustule') consists of two valves which are made of silica, a robust material that favours their preservation both in sediments and within forensic scenarios. A series of experiments were carried out to investigate the transfer and persistence of diatoms upon common footwear materials, a recipient surface that has historically been overlooked by studies of persistence. The effectiveness of two novel extraction techniques (jet rinsing, and heating and agitation with distilled water) was compared to the established extraction technique of hydrogen peroxide digestion, for a suite of five common footwear materials: canvas, leather, and 'suede' (representing upper materials), and rubber and polyurethane (representing sole materials). It was observed that the novel extraction technique of heating and agitation with distilled water did not extract fewer diatom valves, or cause increased fragmentation of valves, when compared to peroxide digestion, suggesting that the method may be viable where potentially hazardous chemical reactions may be encountered with the peroxide digestion method. Valves could be extracted from all five footwear materials after 3min of immersion, and more valves were extracted from the rougher, woven upper materials than the smoother sole materials. Canvas yielded the most valves (a mean of 2511/cm 2 ) and polyurethane the fewest (a mean of 15/cm 2 ). The persistence of diatoms on the three upper materials was addressed with a preliminary pilot investigation, with ten intervals sampled between 0 and 168h. Valves were seen to persist in detectable quantities after 168h on all three upper materials

The geochemistry of coprostanol in waters and surface sediments from Narragansett Bay

Science.gov (United States)

LeBlanc, Lawrence A.; Latimer, James S.; Ellis, John T.; Quinn, James G.

1992-05-01

A geochemical study of coprostanol (5β-Cholestan-3β-ol) was undertaken, to examine the transport and fate of a compound of moderate polarity and reactivity in the marine environment, and also because of the interest in coprostanol for use as a sewage tracer. During 1985-86, 20 sites in Narragansett Bay, including the major point sources and rivers discharging into the bay estuary, were sampled at four different times. In addition, surface sediments from 26 stations in the bay were collected. The large number and diversity of samples allowed for an assessment of major inputs of sewage into the bay as well as the recent fate of sewage-derived particles in surface sediments. Results from the study revealed that 50% of the total particulate coprostanol entering the bay was discharged into the Providence River, primarily due to inputs from the wastewater treatment facility (WWTF) at Fields Point, as well as input from the Pawtuxet and Blackstone Rivers. In the lower bay, the Newport WWTF was the largest single source of coprostanol (37% of the total particulate coprostanol) to the bay. Effluent concentrations of coprostanol from secondary WWTFs were consistently lower than those of primary treatment facilities, demonstrating the usefulness of corporstanol as an indicator of treatment plant efficiency. The distribution of coprostanol in waters and surface sediments showed a gradient of decreasing concentration downbay. When coprostanol concentrations in surface sediments were normalized to organic carbon (OC) concentrations, elevated levels were seen only in the Providence River, with a more or less even distribution throughout the rest of the bay. Results also suggest that coprostanol degrades more rapidly in the water column compared to the petroleum hydrocarbons (PHCs), polychlorinated biphenyls (PCBs) and polycyclic aromatic hydrocarbons (PAHs), however, it is relatively stable once it is buried in the sediments. Coprostanol concentrations in waters (0·02-0·22 �

Variability in terrigenous sediment supply offshore of the Rio de la Plata (Uruguay) recording the continental climatic history over the past 1200 years

Science.gov (United States)

Perez, L.; García-Rodríguez, F.; Hanebuth, T. J. J.

2015-04-01

The continental shelf adjacent to the Río de la Plata (RdlP) exhibits extremely complex hydrographic and ecological characteristics which are of great socio-economic importance. Since the long-term environmental variations related to the atmospheric (wind fields), hydrologic (freshwater plume), and oceanographic (currents and fronts) regimes are little known, the aim of this study is to reconstruct the changes in the terrigenous input into the inner continental shelf during the Late Holocene period (associated with the RdlP sediment discharge) and to unravel the climatic forcing mechanisms behind them. To achieve this, we retrieved a 10 m long sediment core from the RdlP mud depocenter at a depth of 57 m (GeoB 13813-4). The radiocarbon age control indicated an extremely high sedimentation rate of 0.8 cm per year, encompassing the past 1200 years (750-2000 AD). We used element ratios (Ti / Ca, Fe / Ca, Ti / Al, Fe / K) as regional proxies for the fluvial input signal, and the variations in relative abundance of salinity-indicative diatom groups (freshwater vs. marine-brackish) to assess the variability in terrigenous water and sediment discharge. Ti / Ca, Fe / Ca, Ti / Al, Fe / K and the freshwater diatom group showed the lowest values between 850 and 1300 AD, while the highest values occurred between 1300 and 1850 AD. The variations in the sedimentary record can be attributed to such regional and global climatic episodes as the Medieval Climatic Anomaly (MCA) and the Little Ice Age (LIA), both of which had a significant impact on rainfall and wind patterns over the region. During the MCA, a northward migration of the Intertropical Confluence Zone (ITCZ) could explain the lowest element ratios (indicative of a lower terrigenous input) and a marine-dominated diatom record, both indicative of a reduced RdlP freshwater plume. In contrast during the LIA, the southward migration of the ITCZ accompanied by El Niño-like state conditions may have led to an expansion of

A doubling of microphytobenthos biomass coincides with a tenfold increase in denitrifier and total bacterial abundances in intertidal sediments of a temperate estuary.

Directory of Open Access Journals (Sweden)

Helen Decleyre

Full Text Available Surface sediments are important systems for the removal of anthropogenically derived inorganic nitrogen in estuaries. They are often characterized by the presence of a microphytobenthos (MPB biofilm, which can impact bacterial communities in underlying sediments for example by secretion of extracellular polymeric substances (EPS and competition for nutrients (including nitrogen. Pyrosequencing and qPCR was performed on two intertidal surface sediments of the Westerschelde estuary characterized by a two-fold difference in MPB biomass but no difference in MPB composition. Doubling of MPB biomass was accompanied by a disproportionately (ten-fold increase in total bacterial abundances while, unexpectedly, no difference in general community structure was observed, despite significantly lower bacterial richness and distinct community membership, mostly for non-abundant taxa. Denitrifier abundances corresponded likewise while community structure, both for nirS and nirK denitrifiers, remained unchanged, suggesting that competition with diatoms for nitrate is negligible at concentrations in the investigated sediments (appr. 1 mg/l NO3-. This study indicates that MPB biomass increase has a general, significantly positive effect on total bacterial and denitrifier abundances, with stimulation or inhibition of specific bacterial groups that however do not result in a re-structured community.

Stable carbon isotope composition of organic material and carbonate in sediment of a swamp and lakes in Honshu island, Japan

International Nuclear Information System (INIS)

Ishizuka, Toshio

1978-01-01

Recent sediments from a swamp and lakes in Honshu were analyzed for organic carbon and carbonate contents, and stable isotope ratios of carbon in the organic materials and carbonate. delta C 13 values of the carbonate tend to be distinctly larger than those of organic carbon in reducing condition as natural gas field, whereas in oxidizing SO 4 -reducing conditions, they are slightly larger than those of organic carbon within the limited range of a few per mil. Carbon isotopic compositions of organic carbon in sediment of the swamp, Obuchi-numa, were analyzed and compared with habitat analysis of associated fossil diatoms. deltaC 13 values of organic carbon in the sediment vary in correlation with the species abundance in habitat of the associated fossil diatoms, ranging from fresh-water (-0.0282) to coastal marine (-0.0236) via brackish. (auth.)

Methane Bubbles Transport Particles From Contaminated Sediment to a Lake Surface

Science.gov (United States)

Delwiche, K.; Hemond, H.

2017-12-01

Methane bubbling from aquatic sediments has long been known to transport carbon to the atmosphere, but new evidence presented here suggests that methane bubbles also transport particulate matter to a lake surface. This transport pathway is of particular importance in lakes with contaminated sediments, as bubble transport could increase human exposure to toxic metals. The Upper Mystic Lake in Arlington, MA has a documented history of methane bubbling and sediment contamination by arsenic and other heavy metals, and we have conducted laboratory and field studies demonstrating that methane bubbles are capable of transporting sediment particles over depths as great as 15 m in Upper Mystic Lake. Methane bubble traps were used in-situ to capture particles adhered to bubble interfaces, and to relate particle mass transport to bubble flux. Laboratory studies were conducted in a custom-made 15 m tall water column to quantify the relationship between water column height and the mass of particulate transport. We then couple this particle transport data with historical estimates of ebullition from Upper Mystic Lake to quantify the significance of bubble-mediated particle transport to heavy metal cycling within the lake. Results suggest that methane bubbles can represent a significant pathway for contaminated sediment to reach surface waters even in relatively deep water bodies. Given the frequent co-occurrence of contaminated sediments and high bubble flux rates, and the potential for human exposure to heavy metals, it will be critical to study the significance of this transport pathway for a range of sediment and contaminant types.

An Eulerian two-phase flow model for sediment transport under realistic surface waves

Science.gov (United States)

Hsu, T. J.; Kim, Y.; Cheng, Z.; Chauchat, J.

2017-12-01

Wave-driven sediment transport is of major importance in driving beach morphology. However, the complex mechanisms associated with unsteadiness, free-surface effects, and wave-breaking turbulence have not been fully understood. Particularly, most existing models for sediment transport adopt bottom boundary layer approximation that mimics the flow condition in oscillating water tunnel (U-tube). However, it is well-known that there are key differences in sediment transport when comparing to large wave flume datasets, although the number of wave flume experiments are relatively limited regardless of its importance. Thus, a numerical model which can resolve the entire water column from the bottom boundary layer to the free surface can be a powerful tool. This study reports an on-going effort to better understand and quantify sediment transport under shoaling and breaking surface waves through the creation of open-source numerical models in the OpenFOAM framework. An Eulerian two-phase flow model, SedFoam (Cheng et al., 2017, Coastal Eng.) is fully coupled with a volume-of-fluid solver, interFoam/waves2Foam (Jacobsen et al., 2011, Int. J. Num. Fluid). The fully coupled model, named SedWaveFoam, regards the air and water phases as two immiscible fluids with the interfaces evolution resolved, and the sediment particles as dispersed phase. We carried out model-data comparisons with the large wave flume sheet flow data for nonbreaking waves reported by Dohmen-Janssen and Hanes (2002, J. Geophysical Res.) and good agreements were obtained for sediment concentration and net transport rate. By further simulating a case without free-surface (mimic U-tube condition), the effects of free-surface, most notably the boundary layer streaming effect on total transport, can be quantified.

Approaches to surface complexation modeling of Uranium(VI) adsorption on aquifer sediments

Science.gov (United States)

Davis, J.A.; Meece, D.E.; Kohler, M.; Curtis, G.P.

2004-01-01

Uranium(VI) adsorption onto aquifer sediments was studied in batch experiments as a function of pH and U(VI) and dissolved carbonate concentrations in artificial groundwater solutions. The sediments were collected from an alluvial aquifer at a location upgradient of contamination from a former uranium mill operation at Naturita, Colorado (USA). The ranges of aqueous chemical conditions used in the U(VI) adsorption experiments (pH 6.9 to 7.9; U(VI) concentration 2.5 ?? 10-8 to 1 ?? 10-5 M; partial pressure of carbon dioxide gas 0.05 to 6.8%) were based on the spatial variation in chemical conditions observed in 1999-2000 in the Naturita alluvial aquifer. The major minerals in the sediments were quartz, feldspars, and calcite, with minor amounts of magnetite and clay minerals. Quartz grains commonly exhibited coatings that were greater than 10 nm in thickness and composed of an illite-smectite clay with occluded ferrihydrite and goethite nanoparticles. Chemical extractions of quartz grains removed from the sediments were used to estimate the masses of iron and aluminum present in the coatings. Various surface complexation modeling approaches were compared in terms of the ability to describe the U(VI) experimental data and the data requirements for model application to the sediments. Published models for U(VI) adsorption on reference minerals were applied to predict U(VI) adsorption based on assumptions about the sediment surface composition and physical properties (e.g., surface area and electrical double layer). Predictions from these models were highly variable, with results overpredicting or underpredicting the experimental data, depending on the assumptions used to apply the model. Although the models for reference minerals are supported by detailed experimental studies (and in ideal cases, surface spectroscopy), the results suggest that errors are caused in applying the models directly to the sediments by uncertain knowledge of: 1) the proportion and types of

Photosynthetic Pigments in Diatoms.

Science.gov (United States)

Kuczynska, Paulina; Jemiola-Rzeminska, Malgorzata; Strzalka, Kazimierz

2015-09-16

Photosynthetic pigments are bioactive compounds of great importance for the food, cosmetic, and pharmaceutical industries. They are not only responsible for capturing solar energy to carry out photosynthesis, but also play a role in photoprotective processes and display antioxidant activity, all of which contribute to effective biomass and oxygen production. Diatoms are organisms of a distinct pigment composition, substantially different from that present in plants. Apart from light-harvesting pigments such as chlorophyll a, chlorophyll c, and fucoxanthin, there is a group of photoprotective carotenoids which includes β-carotene and the xanthophylls, diatoxanthin, diadinoxanthin, violaxanthin, antheraxanthin, and zeaxanthin, which are engaged in the xanthophyll cycle. Additionally, some intermediate products of biosynthetic pathways have been identified in diatoms as well as unusual pigments, e.g., marennine. Marine algae have become widely recognized as a source of unique bioactive compounds for potential industrial, pharmaceutical, and medical applications. In this review, we summarize current knowledge on diatom photosynthetic pigments complemented by some new insights regarding their physico-chemical properties, biological role, and biosynthetic pathways, as well as the regulation of pigment level in the cell, methods of purification, and significance in industries.

Photosynthetic Pigments in Diatoms

Directory of Open Access Journals (Sweden)

Paulina Kuczynska

2015-09-01

Full Text Available Photosynthetic pigments are bioactive compounds of great importance for the food, cosmetic, and pharmaceutical industries. They are not only responsible for capturing solar energy to carry out photosynthesis, but also play a role in photoprotective processes and display antioxidant activity, all of which contribute to effective biomass and oxygen production. Diatoms are organisms of a distinct pigment composition, substantially different from that present in plants. Apart from light-harvesting pigments such as chlorophyll a, chlorophyll c, and fucoxanthin, there is a group of photoprotective carotenoids which includes β-carotene and the xanthophylls, diatoxanthin, diadinoxanthin, violaxanthin, antheraxanthin, and zeaxanthin, which are engaged in the xanthophyll cycle. Additionally, some intermediate products of biosynthetic pathways have been identified in diatoms as well as unusual pigments, e.g., marennine. Marine algae have become widely recognized as a source of unique bioactive compounds for potential industrial, pharmaceutical, and medical applications. In this review, we summarize current knowledge on diatom photosynthetic pigments complemented by some new insights regarding their physico-chemical properties, biological role, and biosynthetic pathways, as well as the regulation of pigment level in the cell, methods of purification, and significance in industries.

Epibiotic Diatoms Are Universally Present on All Sea Turtle Species

Science.gov (United States)

Majewska, Roksana; Lazo-Wasem, Eric A.; Nel, Ronel; Paladino, Frank V.; Rojas, Lourdes; Zardus, John D.; Pinou, Theodora

2016-01-01

The macro-epibiotic communities of sea turtles have been subject to growing interest in recent years, yet their micro-epibiotic counterparts are almost entirely unknown. Here, we provide the first evidence that diatoms are epibionts for all seven extant species of sea turtle. Using Scanning Electron Microscopy, we inspected superficial carapace or skin samples from a single representative of each turtle species. We distinguished 18 diatom taxa from these seven individuals, with each sea turtle species hosting at least two diatom taxa. We recommend that future research is undertaken to confirm whether diatom communities vary between sea turtle species and whether these diatom taxa are facultative or obligate commensals. PMID:27257972

Lead-210 analyses of sediment accumulation rates in five Southern Illinois surface mine lakes

International Nuclear Information System (INIS)

Brugam, R.B.; Carlson, M.A.

1981-01-01

210 Pb is a naturally occurring radionuclide with a short half-life (22 yrs) which can be used to determine sedimentation rates in lakes. The technique was applied in 5 Southern Illinois surface mine lakes where it revealed past sedimentation rates to have been extremely variable. In some of the lakes there was evidence for extensive slumping immediately after mining ceased followed by a more regular sedimentary regime that continued until the present. In others there have been one or more changes in sediment accumulation rates since lacustrine sedimentation began. These results suggest that simply measuring the amount of sediment that has accumulated in a surface mine lake since mining ceased is inadequate to determine filling rates. Sedimentation rates in the 5 lakes varied from .60 +- .19 to 1.46 +- .19 cm/y. These rates are similar to natural lakes with moderately disturbed watersheds

Responses of diatom communities to hydrological processes during rainfall events

Science.gov (United States)

Wu, Naicheng; Faber, Claas; Ulrich, Uta; Fohrer, Nicola

2015-04-01

The importance of diatoms as a tracer of hydrological processes has been recently recognized (Pfister et al. 2009, Pfister et al. 2011, Tauro et al. 2013). However, diatom variations in a short-term scale (e.g., sub-daily) during rainfall events have not been well documented yet. In this study, rainfall event-based diatom samples were taken at the outlet of the Kielstau catchment (50 km2), a lowland catchment in northern Germany. A total of nine rainfall events were caught from May 2013 to April 2014. Non-metric multidimensional scaling (NMDS) revealed that diatom communities of different events were well separated along NMDS axis I and II, indicating a remarkable temporal variation. By correlating water level (a proxy of discharge) and different diatom indices, close relationships were found. For example, species richness, biovolume (μm3), Shannon diversity and moisture index01 (%, classified according to van Dam et al. 1994) were positively related with water level at the beginning phase of the rainfall (i.e. increasing limb of discharge peak). However, in contrast, during the recession limb of the discharge peak, diatom indices showed distinct responses to water level declines in different rainfall events. These preliminary results indicate that diatom indices are highly related to hydrological processes. The next steps will include finding out the possible mechanisms of the above phenomena, and exploring the contributions of abiotic variables (e.g., hydrologic indices, nutrients) to diatom community patterns. Based on this and ongoing studies (Wu et al. unpublished data), we will incorporate diatom data into End Member Mixing Analysis (EMMA) and select the tracer set that is best suited for separation of different runoff components in our study catchment. Keywords: Diatoms, Rainfall event, Non-metric multidimensional scaling, Hydrological process, Indices References: Pfister L, McDonnell JJ, Wrede S, Hlúbiková D, Matgen P, Fenicia F, Ector L, Hoffmann L

Sedimentation and fouling of optical surfaces at the ANTARES site

Science.gov (United States)

ANTARES Collaboration; CAU CEFREM Collaboration; Amram, P.; Anghinolfi, M.; Anvar, S.; Ardellier-Desages, F. E.; Aslanides, E.; Aubert, J.-J.; Azoulay, R.; Bailey, D.; Basa, S.; Battaglieri, M.; Bellotti, R.; Beltramelli, J.; Benhammou, Y.; Berthier, R.; Bertin, V.; Billault, M.; Blaes, R.; Bland, R. W.; Blondeau, F.; de Botton, N.; Boulesteix, J.; Brooks, C. B.; Brunner, J.; Cafagna, F.; Calzas, A.; Capone, A.; Caponetto, L.; Cârloganu, C.; Carmona, E.; Carr, J.; Cartwright, S. L.; Cecchini, S.; Ciacio, F.; Circella, M.; Compère, C.; Cooper, S.; Coyle, P.; Cuneo, S.; Danilov, M.; van Dantzig, R.; de Marzo, C.; Destelle, J.-J.; de Vita, R.; Dispau, G.; Druillole, F.; Engelen, J.; Feinstein, F.; Ferdi, C.; Festy, D.; Fopma, J.; Gallone, J.-M.; Giacomelli, G.; Goret, P.; Gournay, J.-F.; Hallewell, G.; Heijboer, A.; Hernández-Rey, J. J.; Hubbard, J. R.; Jaquet, M.; de Jong, M.; Karolak, M.; Keller, P.; Kooijman, P.; Kouchner, A.; Kudryavtsev, V. A.; Lafoux, H.; Lagier, P.; Lamare, P.; Languillat, J.-C.; Laubier, L.; Laugier, J.-P.; Leilde, B.; Le Provost, H.; Le van Suu, A.; Lo Nigro, L.; Lo Presti, D.; Loucatos, S.; Louis, F.; Lyashuk, V.; Magnier, P.; Marcelin, M.; Margiotta, A.; Masullo, R.; Mazéas, F.; Mazeau, B.; Mazure, A.; McMillan, J. E.; Migneco, E.; Millot, C.; Mols, P.; Montanet, F.; Montaruli, T.; Moscoso, L.; Musumeci, M.; Nezri, E.; Nooren, G. J.; Oberski, J. E. J.; Olivetto, C.; Oppelt-Pohl, A.; Palanque-Delabrouille, N.; Papaleo, R.; Payre, P.; Perrin, P.; Petruccetti, M.; Petta, C.; Piattelli, P.; Poinsignon, J.; Potheau, R.; Queinec, Y.; Racca, C.; Raia, G.; Randazzo, N.; Rethore, F.; Riccobene, G.; Ricol, J.-S.; Ripani, M.; Roca-Blay, V.; Romeyer, A.; Rostovstev, A.; Russo, G. V.; Sacquin, Y.; Salusti, E.; Schuller, J.-P.; Schuster, W.; Soirat, J.-P.; Souvorova, O.; Spooner, N. J. C.; Spurio, M.; Stolarczyk, T.; Stubert, D.; Taiuti, M.; Tao, C.; Thompson, L. F.; Tilav, S.; Triay, R.; Usik, A.; Valdy, P.; Valente, V.; Varlamov, I.; Vaudaine, G.; Vernin, P.; Vladimirsky, E.; Vorobiev, M.; de Witt Huberts, P.; de Wolf, E.; Zakharov, V.; Zavatarelli, S.; Zornoza, Juan de Dios; Zún~Iga, J.; Aloïsi, J.-C.; Kerhervé, Ph.; Monaco, A.

2003-05-01

ANTARES is a project leading towards the construction and deployment of a neutrino telescope in the deep Mediterranean Sea. The telescope will use an array of photomultiplier tubes to detect the Cherenkov light emitted by muons resulting from the interaction with matter of high energy neutrinos. In the vicinity of the deployment site the ANTARES Collaboration has performed a series of in situ measurements to study the change in light transmission through glass surfaces during immersions of several months. The average loss of light transmission is estimated to be only ~2% at the equator of a glass sphere one year after deployment. It decreases with increasing zenith angle, and tends to saturate with time. The transmission loss, therefore, is expected to remain small for the several year lifetime of the ANTARES detector whose optical modules are oriented downwards. The measurements were complemented by the analysis of the 210Pb activity profile in sediment cores and the study of biofouling on glass plates. Despite a significant sedimentation rate at the site, in the 0.02-0.05 cmyr-1 range, the sediments adhere loosely to the glass surfaces and can be washed off by water currents. Further, fouling by deposits of light-absorbing particulates is only significant for surfaces facing upwards.

Oceanographic and Biogeochemical Insights from Diatom Genomes

Science.gov (United States)

Bowler, Chris; Vardi, Assaf; Allen, Andrew E.

2010-01-01

Diatoms are the most successful group of eukaryotic phytoplankton in the modern ocean and have risen to dominance relatively quickly over the last 100 million years. Recently completed whole genome sequences from two species of diatom, Thalassiosira pseudonana and Phaeodactylum tricornutum, have revealed a wealth of information about the evolutionary origins and metabolic adaptations that have led to their ecological success. A major finding is that they have incorporated genes both from their endosymbiotic ancestors and by horizontal gene transfer from marine bacteria. This unique melting pot of genes encodes novel capacities for metabolic management, for example, allowing the integration of a urea cycle into a photosynthetic cell. In this review we show how genome-enabled approaches are being leveraged to explore major phenomena of oceanographic and biogeochemical relevance, such as nutrient assimilation and life histories in diatoms. We also discuss how diatoms may be affected by climate change-induced alterations in ocean processes.

Effect of oil spillage on ecological diversity of pneumatophore associated fauna and flora in central west coast of india

Digital Repository Service at National Institute of Oceanography (India)

Sahoo, G.; Ansari, Z.A.

.4 and 1.7 respectively Centrale diatoms dominated in case of sediment while pennales dominated on the pneumatophore surface In Goa, the diatom community was dominated by Nitzschia (1203 cells/1 cm²) and coscinodiscus (1876 cells/ 1 cm²

Diatomic interaction potential theory applications

CERN Document Server

Goodisman, Jerry

2013-01-01

Diatomic Interaction Potential Theory, Volume 2: Applications discusses the variety of applicable theoretical material and approaches in the calculations for diatomic systems in their ground states. The volume covers the descriptions and illustrations of modern calculations. Chapter I discusses the calculation of the interaction potential for large and small values of the internuclear distance R (separated and united atom limits). Chapter II covers the methods used for intermediate values of R, which in principle means any values of R. The Hartree-Fock and configuration interaction schemes des

Epibiotic Diatoms Are Universally Present on All Sea Turtle Species.

Directory of Open Access Journals (Sweden)

Nathan J Robinson

Full Text Available The macro-epibiotic communities of sea turtles have been subject to growing interest in recent years, yet their micro-epibiotic counterparts are almost entirely unknown. Here, we provide the first evidence that diatoms are epibionts for all seven extant species of sea turtle. Using Scanning Electron Microscopy, we inspected superficial carapace or skin samples from a single representative of each turtle species. We distinguished 18 diatom taxa from these seven individuals, with each sea turtle species hosting at least two diatom taxa. We recommend that future research is undertaken to confirm whether diatom communities vary between sea turtle species and whether these diatom taxa are facultative or obligate commensals.

All New Faces of Diatoms: Potential Source of Nanomaterials and Beyond

Directory of Open Access Journals (Sweden)

Meerambika Mishra

2017-07-01

Full Text Available Nature’s silicon marvel, the diatoms have lately astounded the scientific community with its intricate designs and lasting durability. Diatoms are a major group of phytoplanktons involved in the biogeochemical cycling of silica and are virtually inherent in every environment ranging from water to ice to soil. The usage of diatoms has proved prudently cost effective and its handling neither requires costly materials nor sophisticated instruments. Diatoms can easily be acquired from the environment, their culture requires ambient condition and does not involve any costly media or expensive instruments, besides, they can be transported in small quantities and proliferated to a desirable confluence from that scratch, thus are excellent cost effective industrial raw material. Naturally occurring diatom frustules are a source of nanomaterials. Their silica bio-shells have raised curiosity among nanotechnologists who hope that diatoms will facilitate tailoring minuscule structures which are beyond the capabilities of material scientists. Additionally, there is a colossal diversity in the dimensions of diatoms as the frustule shape differs from species to species; this provides a scope for the choice of a particular species of diatom to be tailored to an exacting requisite, thus paving the way to create desired three dimensional nanocomposites. The present article explores the use of diatoms in various arenas of science, may it be in nanotechnology, biotechnology, environmental science, biophysics or biochemistry and summarizes facets of diatom biology under one umbrella. Special emphasis has been given to biosilicification, biomineralization and use of diatoms as nanomaterials’, drug delivery vehicles, optical and immune-biosensors, filters, immunodiagnostics, aquaculture feeds, lab-on-a-chip, metabolites, and biofuels.

Aeolian sediment transport on a beach: Surface moisture, wind fetch, and mean transport

Science.gov (United States)

Bauer, B. O.; Davidson-Arnott, R. G. D.; Hesp, P. A.; Namikas, S. L.; Ollerhead, J.; Walker, I. J.

2009-04-01

Temporal and spatial changes in wind speed, wind direction, and moisture content are ubiquitous across sandy coastal beaches. Often these factors interact in unknown ways to create complexity that confounds our ability to model sediment transport at any point across the beach as well as our capacity to predict sediment delivery into the adjacent foredunes. This study was designed to measure wind flow and sediment transport over a beach and foredune at Greenwich Dunes, Prince Edward Island National Park, with the express purpose of addressing these complex interactions. Detailed measurements are reported for one stormy day, October 11, 2004, during which meteorological conditions were highly variable. Wind speed ranged from 4 ms - 1 to over 20 ms - 1 , wind direction was highly oblique varying between 60° and 85° from shore perpendicular, and moisture content of the sand surface ranged from a minimum of about 3% (by mass) to complete saturation depending on precipitation, tidal excursion, and storm surge that progressively inundated the beach. The data indicate that short-term variations (i.e., minutes to hours) in sediment transport across this beach arise predominantly because of short-term changes in wind speed, as is expected, but also because of variations in wind direction, precipitation intensity, and tide level. Even slight increases in wind speed are capable of driving more intense saltation events, but this relationship is mediated by other factors on this characteristically narrow beach. As the angle of wind approach becomes more oblique, the fetch distance increases and allows greater opportunity for the saltation system to evolve toward an equilibrium transport state before reaching the foredunes. Whether the theoretically-predicted maximum rate of transport is ever achieved depends on the character of the sand surface (e.g., grain size, slope, roughness, vegetation, moisture content) and on various attributes of the wind field (e.g., average wind

Automated measurement of diatom size

Science.gov (United States)

Spaulding, Sarah A.; Jewson, David H.; Bixby, Rebecca J.; Nelson, Harry; McKnight, Diane M.

2012-01-01

Size analysis of diatom populations has not been widely considered, but it is a potentially powerful tool for understanding diatom life histories, population dynamics, and phylogenetic relationships. However, measuring cell dimensions on a light microscope is a time-consuming process. An alternative technique has been developed using digital flow cytometry on a FlowCAM® (Fluid Imaging Technologies) to capture hundreds, or even thousands, of images of a chosen taxon from a single sample in a matter of minutes. Up to 30 morphological measures may be quantified through post-processing of the high resolution images. We evaluated FlowCAM size measurements, comparing them against measurements from a light microscope. We found good agreement between measurement of apical cell length in species with elongated, straight valves, including small Achnanthidium minutissimum (11-21 µm) and largeDidymosphenia geminata (87–137 µm) forms. However, a taxon with curved cells, Hannaea baicalensis (37–96 µm), showed differences of ~ 4 µm between the two methods. Discrepancies appear to be influenced by the choice of feret or geodesic measurement for asymmetric cells. We describe the operating conditions necessary for analysis of size distributions and present suggestions for optimal instrument conditions for size analysis of diatom samples using the FlowCAM. The increased speed of data acquisition through use of imaging flow cytometers like the FlowCAM is an essential step for advancing studies of diatom populations.

Chemical Characteristics of Seawater and Sediment in the Yap Trench

Science.gov (United States)

Ding, H.; Sun, C.; Yang, G.

2017-12-01

In June 2016, seawater samples at sediment-seawater interface and sediment samples were collected by the he Jiaolong, China's manned submersible, at four sampling sites located in the Yap Trench. Seawater samples from different depths of the trench were also collected by CTD. Chemical parameters, including pH, alkanility, concentrations of dissolved inorganic carbon, dissolved and total organic carbon, methane, dimethylsulfoniopropionate, nutrients, carbohydrates, and amino acids were analyzed in the seawater samples. Concentrations of total organic carbon, six constant elements and nine trace elements were determined in the sediment samples. All the vertical profiles of the chemical parameters in the seawater have unique characteristics. Our resluts also showed that the carbonate compensation depth (CCD) was between 4500 m and 5000 m in the trench. The hadal sediment at 6500 m depth under the CCD line was siliceous ooze favored for the burial of orgaic carbon, attributed to accumulation of surface sediment by gravity flow. The abyssal sediment at the 4500 m depth was calcareous ooze. Various microfossils, such as discoasters and diatoms, were identified in different sediment layers of the sediment samples.Based on the ratios of Fe/Al and Ti/Al, and the correlation between different elements, the sediment in the Yap Trench were derived from biogenic, terrestrial, volcanic and autogenic sources. The ratios of Ni/Co and V/Cr showed that the deposition environment of the trench should be oxidative, arributed to inflow of the Antractic bottom oxygen-rich seawater.The high concentraiont of Ca in the sediment from the station 371-Yap-S02 below 4 cm depth indicated that there was no large-scale volcanic eruption in the research area and the volcanic materials in the sediment might orginated from the Mariana Volcanic Arc, and the Carolyn Ridge has been slowly sinking on the east side of the trench due to plate subduction. This study is the first systematic study of

Decomposition of 14C-labeled organic substances in marine sediments

International Nuclear Information System (INIS)

Anon.

1986-01-01

The depth variation of total organic carbon (TOC), organic matter composition and porewater composition in marine sediments suggest that different components of the organic matter undergo decomposition at widely different rates. The decomposition of 14 C-labeled organic substances was followed in sediment microcosms in the laboratory. The substances used were chosen to simulate a portion of material settling to the sediment-water interface (a marine diatom) or hypothesized components of refractory sediment organic matter (melanoidins and a bacterial polymer). The microcosms were found to be good models of the sediment-water interface in terms of how well they mimicked sediment decomposition rates and processes. The decomposition of the labeled material and the natural sediment TOC were monitored over 1 month: the water overlying the sediment remained oxic, and net consumption of nitrate was small. There was no detectable sulfate reduction. The algae and the bacterial polymer were decomposed on average 9x faster than the melanoidins and 90x faster than the natural sediment TOC. The soluble fraction of the algae was decomposed more rapidly than the particulate material

Bacterial biogeography influenced by shelf-basin exchange in the Arctic surface sediment at the Chukchi Borderland.

Science.gov (United States)

Han, Dukki; Nam, Seung-Il; Ha, Ho Kyung; Kim, Hyoungjun; Sadowsky, Michael J; Lee, Yoo Kyung; Hur, Hor-Gil

2016-02-01

It has been known that continental shelves around the Arctic Ocean play a major role in the ventilation of the deep basins as a consequence of shelf-basin exchange. In the present study, we found that bacterial assemblage of the surface sediment was different from that of seawater while seawater harboured local bacterial assemblages in response to the Arctic hydrography. This finding suggests that the Arctic seafloor sediments may have distinctive bacterial biogeography. Moreover, the distribution of bacterial assemblages and physicochemical properties in surface sediments changed gradually from the Arctic continental shelf to deep-sea basin. Based on the results, bacterial biogeography in the Arctic seafloor sediments may be influenced by winnowing and re-deposition of surface sediments through the sediment gravity flow. The present study offers a deeper understanding of shelf convection and its role for the construction of bacterial assemblages in the Arctic Ocean. © 2015 Society for Applied Microbiology and John Wiley & Sons Ltd.

[Surface Property and Sorption Characteristics of Phosphorus onto Surface Sediments in Sanggou Bay].

Science.gov (United States)

Zhu, Jia-mei; Cao, Xiao-yan; Liu, Su-mei; Wang, Li-sha; Yang, Gui-peng; Ge, Cheng-feng; Lu, Min

2016-02-15

Kinetic curves and isotherms were investigated to study the sorption mechanism of phosphorus onto the sediments of Sanggou Bay, together with the surface charge properties of sediments and the forms of phosphorus studied. The results showed that the sorption including a fast process and a slow one, and could be described by a two-compartment first order equation. The thermodynamic isotherms were well fitted with a modified Langmuir equation. The maximum adsorption capacity was larger in summer than in spring, and the smaller particle size was favorable to the sorption. The maximum adsorption capacities (Qm) were 0.0471-0.1230 mg x g(-1), and the zero equilibrium phosphorus concentration (EPC0) of the sediments ranged from 0.0596 mg x L(-1) to 0.1927 mg x L(-1), which indicated that the sediments from Sanggou Bay were sources of phosphorus. Inorganic phosphorus (IP) was the main form of total phosphorus (TP). The contents of exchangeable or loosely absorbed P and Fe-bound P increased significantly in the samples after sorption. The sorption process involved physical sorption and chemical sorption, with the former being the predominant.

Genetic and metabolic engineering in diatoms.

Science.gov (United States)

Huang, Weichao; Daboussi, Fayza

2017-09-05

Diatoms have attracted considerable attention due to their success in diverse environmental conditions, which probably is a consequence of their complex origins. Studies of their metabolism will provide insight into their adaptation capacity and are a prerequisite for metabolic engineering. Several years of investigation have led to the development of the genome engineering tools required for such studies, and a profusion of appropriate tools is now available for exploring and exploiting the metabolism of these organisms. Diatoms are highly prized in industrial biotechnology, due to both their richness in natural lipids and carotenoids and their ability to produce recombinant proteins, of considerable value in diverse markets. This review provides an overview of recent advances in genetic engineering methods for diatoms, from the development of gene expression cassettes and gene delivery methods, to cutting-edge genome-editing technologies. It also highlights the contributions of these rapid developments to both basic and applied research: they have improved our understanding of key physiological processes; and they have made it possible to modify the natural metabolism to favour the production of specific compounds or to produce new compounds for green chemistry and pharmaceutical applications.This article is part of the themed issue 'The peculiar carbon metabolism in diatoms'. © 2017 The Author(s).

Paleoclimatic features in Central Japan based on the stable isotope compositions of Lake Biwa sediments and speleothems

International Nuclear Information System (INIS)

Nakai, Nobuyuki; Shirai, Yasutoshi

1978-01-01

In this paper, the climatic fluctuation of Japanese Island in the past deduced from the carbon isotope study of Lake Biwa sediments is discussed in connection with the vertical profile of fossil diatom numbers, climate estimated by palynological studies, and paleogeomagnetic polarity change for the same core samples. In addition to the climatic studies that have used the Lake sediments, the climatic change measured in detail by O 18 /O 16 ratios of speleothem CaCO 3 is reported for the past 37 x 10 3 years. Sediment samples for C 13 /C 12 analyses were taken at intervals of 5 m from the cored column of 200 m length. Stalactite and flowstone samples were collected from Otaki Cave, Gifu Prefecture, near Lake Biwa. The isotopic data for both carbon and oxygen are presented as per mil deviation from the PDB and SMOW standards, respectively. The Δ C 13 values of organic C are plotted in relation to the number of total diatom cells. The figure shows no correlation between them. The Δ C 13 values of sedimentary organic C and the past productivity of the lake have different linear relation in each different period. The present authors tried to calculate directly the deposition temperature by a method different from Hendy's. The Δ O 18 values of the water passing through the speleothem surface in the past are determined by those of rain water in the region. The calculated temperatures range from 10.6 to 15.0 deg. C. By connecting the results obtained from two flowstones and a stalactite, a paleotemperature curve can be drawn for the last 37 x 10 3 years. (Kato, T

Surface water, particulate matter, and sediments of inland waters

International Nuclear Information System (INIS)

Mundschenk, H.

1985-01-01

The Bundesanstalt fuer Gewaesserkunde (BfG) since 1958 runs a system for monitoring the surface water and sediments of Federal German waterways in its capacity as a directing water monitoring centre. The data recorded over the years show that the radioactivity released by the various emission sources leads to radionuclide concentrations in water, particulate matter, or sediments that generally are below the detection limits defined in the relevant legal provisions governing monitoring and surveillance of nuclear facilities effluents. Representative examples of measuring methods and results (as for e.g. for H-3) are given. (DG) [de

Epipsammic diatoms in streams influenced by urban pollution, São Carlos, SP, Brazil

Directory of Open Access Journals (Sweden)

T. Bere

Full Text Available Epipsammic diatoms have important implications for ecosystem processes in lotic environments. Most of the studies on benthic diatoms concentrate on epilithic diatoms and very little is known about epipsammic diatoms. The objective of this study was to assess epipsammic diatom communities in streams in relation to environmental conditions. Epipsammic diatoms and water quality sampling was done at 7 sites during summer base flow period (2008. Forward stepwise multiple regression and canonical correspondence analysis (CCA were used to determine environmental gradients along which species vary with physical and chemical variables. A total of 112 diatom species distributed among 44 genera were recorded. Altitude and the process of eutrophication played a significant role in structuring diatom communities in the study region.

Codon adaptation and synonymous substitution rate in diatom plastid genes.

Science.gov (United States)

Morton, Brian R; Sorhannus, Ulf; Fox, Martin

2002-07-01

Diatom plastid genes are examined with respect to codon adaptation and rates of silent substitution (Ks). It is shown that diatom genes follow the same pattern of codon usage as other plastid genes studied previously. Highly expressed diatom genes display codon adaptation, or a bias toward specific major codons, and these major codons are the same as those in red algae, green algae, and land plants. It is also found that there is a strong correlation between Ks and variation in codon adaptation across diatom genes, providing the first evidence for such a relationship in the algae. It is argued that this finding supports the notion that the correlation arises from selective constraints, not from variation in mutation rate among genes. Finally, the diatom genes are examined with respect to variation in Ks among different synonymous groups. Diatom genes with strong codon adaptation do not show the same variation in synonymous substitution rate among codon groups as the flowering plant psbA gene which, previous studies have shown, has strong codon adaptation but unusually high rates of silent change in certain synonymous groups. The lack of a similar finding in diatoms supports the suggestion that the feature is unique to the flowering plant psbA due to recent relaxations in selective pressure in that lineage.

Quantification of diatoms in biofilms: Standardisation of methods

Digital Repository Service at National Institute of Oceanography (India)

Patil, J.S.; Anil, A.C.

of the difficulty in sampling and enumeration. Scraping or brushing are the traditional methods used for removal of diatoms from biofilms developed on solid substrata. The method of removal is the most critical step in enumerating the biofilm diatom community...

Aliphatic hydrocarbons in surface sediments from South China Sea off Kuching Division, Sarawak

International Nuclear Information System (INIS)

Hafidz Yusoff; Zaini Assim; Samsur Mohamad

2012-01-01

Eighteen surface sediment samples collected from South China Sea off Kuching Division, Sarawak were analyzed for aliphatic hydrocarbons. These hydrocarbons were recovered from sediment by Soxhlet extraction method and then analyzed using gas chromatography equipped with mass spectrometer (GC/ MS). Total concentrations of aliphatic hydrocarbons in surface sediments from South China Sea off Kuching division are ranged from 35.6 μg/ g to 1466.1 μg/ g dry weights. The sediments collected from Bako Bay, Kuching showed high concentrations of total aliphatic hydrocarbons. Several molecular indices were used to predict the predominant sources of hydrocarbons. Carbon preference index (CPI) value revealed widespread anthropogenic input in this study area (CPI= 0 to 4.1). The ratio of C 31 / C 19 and C 29 / C 31 indicated that major input of aliphatic hydrocarbon mostly transfer by lateral input to the marine environment than atmospheric movements. Generally, the concentrations of aliphatic hydrocarbons in sediment from South China Sea off Kuching division are generally higher compare to other area in the world. (author)

Architecture and material properties of diatom shells provide effective mechanical protection

Science.gov (United States)

Hamm, Christian E.; Merkel, Rudolf; Springer, Olaf; Jurkojc, Piotr; Maier, Christian; Prechtel, Kathrin; Smetacek, Victor

2003-02-01

Diatoms are the major contributors to phytoplankton blooms in lakes and in the sea and hence are central in aquatic ecosystems and the global carbon cycle. All free-living diatoms differ from other phytoplankton groups in having silicified cell walls in the form of two `shells' (the frustule) of manifold shape and intricate architecture whose function and role, if any, in contributing to the evolutionary success of diatoms is under debate. We explored the defence potential of the frustules as armour against predators by measuring their strength. Real and virtual loading tests (using calibrated glass microneedles and finite element analysis) were performed on centric and pennate diatom cells. Here we show that the frustules are remarkably strong by virtue of their architecture and the material properties of the diatom silica. We conclude that diatom frustules have evolved as mechanical protection for the cells because exceptional force is required to break them. The evolutionary arms race between diatoms and their specialized predators will have had considerable influence in structuring pelagic food webs and biogeochemical cycles.

Modified Ribose Receptor Response in Isolated Diatom Frustules

Energy Technology Data Exchange (ETDEWEB)

Fairbanks, Carly R.

2011-08-26

Diatoms are a distinctive group of microalgae with the unique ability to produce a highly-ordered biosilica matrix, known as the frustule. Diatoms hold significant potential in the biotechnology field as a silica scaffold for embedding proteins. In this study, we analyzed the funtionalization of biosilica with a receptor complex through genetic modification of the diatom, Thalassiosira pseudonana. Through the use of Foerster Resonance Energy Transfer (FRET), the receptor was shown to remain active in transformed frustules after the inner cellular contents were removed. In addition to protein functionality, growth conditions for T. pseudonana were optimized. Untransformed cultures receiving aeration grew more rapidly than stagnant untransformed cultures. Surprisingly, transformed cultures grew more quickly than untransformed cultures. This study demonstrates isolated diatom frustules provide an effective scaffold for embedded receptor complexes. Through this research, we provide the groundwork for the development of new biosensors for use in diagnostics and environmental remediation.

Diatom community and palaeoenvironmental properties of Karacaören diatomite deposits (Nevşehir, Central Anatolia, Turkey)

Science.gov (United States)

Yıldız, Ayşegül; Gürel, Ali; Dursun, Yusuf Gökhan

2017-10-01

The diatom community and palaeoenvironmental properties of volcano genetic diatomite deposits that outcrop in the Karacaören (Nevşehir) area are described. Two stratigraphic sections were measured in the study area. One of these sections was measured in Quaternary lake units (K1), and the other in lacustrine sediments of the late Miocene-Pliocene Ürgüp Formation's Bayramhacılı Member (K2). According to stratigraphic and chemical characteristics of the sections, two distinct paleogeographic domains were determined in the study area. One of these, the shallow lacustrine to fluvial area (Quaternary) which is represented by an alternating sequence of diatomite, silt/mud, and tuffite. The other was the deeper lacustrine stage (late Miocene) which is represented by diatomites with some interbedded mud facies, chert and volcanics. From the diatomite samples of these sections, twenty-five species of 10 different diatom genera were identified. When evaluated together, the ecological properties and the distribution of numerical values of the determined diatom genera and species, showed that the study area's diatomite was generally deposited in shallow, high temperature, nutrient-rich water, where nitrogen and phosphorus were abundant and which was an alkaline (pH > 7) freshwater lake environment. Over time the pH value of the environment decreased (pH < 7), and the environment became acidic.

Comparing optical properties of different species of diatoms

DEFF Research Database (Denmark)

Maibohm, Christian; Friis, Søren Michael Mørk; Su, Y.

2015-01-01

species dependent with huge variety in size, shape, and micro- structure. We have experimentally investigated optical properties of frustules of several species of diatoms to further understand light harvesting properties together with commo n traits, effects and differences between the different...... analysis software. The software uses parameters which are extracted from experimental im ages as basis for simulation and allows us to extract the influence of the different elements of the frustule. The information could be used both for predicting optical properties of diatoms and by changing frustule...... parameters, maybe by altering growth conditions of the diatoms tailor their optical properties....

A new cell primo-culture method for freshwater benthic diatom communities

OpenAIRE

Debenest, Timothée; Silvestre, Jérôme; Coste, Michel; Delmas, François; Pinelli, Eric

2009-01-01

A new cell primo-culture method was developed for the benthic diatom community isolated from biofilm sampled in rivers. The approach comprised three steps: (1) scraping biofilm from river pebbles, (2) diatom isolation from biofilm, and (3) diatom community culture. With a view to designing a method able to stimulate the growth of diatoms, to limit the development of other microorganisms, and to maintain in culture a community similar to the original natural one, different factors were test...

Diatoms: a fossil fuel of the future.

Science.gov (United States)

Levitan, Orly; Dinamarca, Jorge; Hochman, Gal; Falkowski, Paul G

2014-03-01

Long-term global climate change, caused by burning petroleum and other fossil fuels, has motivated an urgent need to develop renewable, carbon-neutral, economically viable alternatives to displace petroleum using existing infrastructure. Algal feedstocks are promising candidate replacements as a 'drop-in' fuel. Here, we focus on a specific algal taxon, diatoms, to become the fossil fuel of the future. We summarize past attempts to obtain suitable diatom strains, propose future directions for their genetic manipulation, and offer biotechnological pathways to improve yield. We calculate that the yields obtained by using diatoms as a production platform are theoretically sufficient to satisfy the total oil consumption of the US, using between 3 and 5% of its land area. Copyright © 2014 Elsevier Ltd. All rights reserved.

Oligocene age of the classic Belén fruit and seed assemblage of north coastal Peru based on diatom biostratigraphy

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Manchester, Steven R.; Herrera, Fabiany; Fourtainer, Elisabeth; Barron, John A.; Martinez, Jean-Noël

2012-01-01

The Belén flora, in north coastal Peru, is the most diverse fruit and seed assemblage known from the Paleogene of South America. Almost no original paleobotanical work has been done on this assemblage since the pioneering treatments published by E.W. Berry, in the 1920’s and the precise age has not been settled. Nevertheless, the flora has been regarded as an important focal point in understanding the vegetational, orogenic and climatic history of northern South America, and in recent literature has been assumed to be early Eocene. In order to tighten the age assignment, which has varied from early Eocene to early Oligocene in the opinions of different authors, we revisited the Belén site, measured the stratigraphic section, and processed the fruit and seed-containing sediment for age-diagnostic microfossils. Although pollen and foraminifera were not recovered, the sediment is rich in diatoms. The diatom assemblage includes Lisitzinia ornata and Rocella vigilans among others, indicating a latest early Oligocene age (~30-28.5 Ma) for these deeper marine sediments that we infer to have been subsequently reworked into the Belén environment . This association leads us to consider the Belén flora, to be late Oligocene in age as is also consistent with its placement in the Mancora Formation. We also reevaluate the botanical identifications, based on the original museum specimens supplemented by more recently collected specimens. The Belén flora provides a window to extinct forests in South America before the rising of the Andes in western Peru.

Diatom diversity and response in metal-polluted river environment: preliminary reports from Gromolo Torrent (Liguria, Italy)

Science.gov (United States)

Capello, Marco; Tolotti, Raffaella; Bernabè, Dimitri; Carbone, Cristina; Consani, Sirio; Vagge, Greta; Cutroneo, Laura

2016-04-01

riverbed from the hard surface of selected cobblestone by scraping. In laboratory all the samples were washed (by digestion with hydrogen peroxide) and mounted according to the protocol used by the DISTAV Laboratories (University of Genoa). Identification and enumeration of diatom valves was performed using an LM Reichert Jung-Polyvar microscope with 1000x oil-immersion lens. Moreover, a representative subsample of each preparation was observed using SEM images providing an interesting iconographic dataset. Preliminary results show that diatom assemblages are characteristic (in both quality and quantity) in the three different environmental conditions highlighted: a) in AMD environment diatoms are quantitatively scarcely, represented by both typically pioneer and highly tolerant species; b) in the Gromolo torrent diatoms are well represented with fairly well-structured communities, but present specific types and different frequencies in teratological frustula, whereas c) in marine environment they are very poorly represented.

Effect of the Silica Content of Diatoms on Protozoan Grazing

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Shuwen Zhang

2017-06-01

Full Text Available This study examined the effect that silica content in diatom cells has on the behavior of protists. The diatoms Thalassiosira weissflogii and T. pseudonana were cultured in high or low light conditions to achieve low and high silica contents, respectively. These cells were then fed to a heterotrophic dinoflagellate Noctiluca scintillans and a ciliate Euplotes sp. in single and mixed diet experiments. Our results showed that in general, N. scintillans and Euplotes sp. both preferentially ingested the diatoms with a low silica content rather than those with a high silica content. However, Euplotes sp. seemed to be less influenced by the silica content than was N. scintillans. In the latter case, the clearance and ingestion rate of the low silica diatoms were significantly higher, both in the short (6-h and long (1-d duration grazing experiments. Our results also showed that N. scintillans required more time to digest the high silica-containing cells. As the high silica diatoms are harder to digest, this might explain why N. scintillans exhibits a strong preference for the low silica prey. Thus, the presence of high silica diatoms might limit the ability of the dinoflagellate to feed. Our findings suggest that the silica content of diatoms affects their palatability and digestibility and, consequently, the grazing activity and selectivity of protozoan grazers.

Increase in nuisance blooms and geographic expansion of the freshwater diatom Didymosphenia geminata

Science.gov (United States)

Spaulding, S.A.; Elwell, E.

2007-01-01

The diatom Didymosphenia geminata (Lyngbye) Schmidt is emerging as an organism with an extraordinary capacity to impact stream ecosystems on a global scale. In recent years, streams in New Zealand, North America, Europe, and Asia have been colonized by unprecedented masses of “didymo” and its extracellular stalks (fig. 1). This diatom is able to dominate stream surfaces by covering up to 100 percent of substrate with thicknesses of greater than 20 cm, greatly altering physical and biological conditions within streams. This species is expanding its geographic range in North America and the rate that nuisance blooms are reported by the public and local media are increasing, yet little scientific investigation of the phenomenon in North America has been initiated.

[Accumulation, distribution and pollution assessment of heavy metals in surface sediment of Caohai plateau wetland, Guizhou province].

Science.gov (United States)

Zhang, Qing-Hai; Lin, Chang-Hu; Tan, Hong; Lin, Shao-Xia; Yang, Hong-Bo

2013-03-01

The objective of this paper is to investigate the concentrations and distribution characteristics of heavy metals in surface sediments of different areas in the Caohai plateau wetland. 16 samples of surface sediments were collected and 7 heavy metals were analyzed. Heavy metal pollution in surface sediments of different areas in the Caohai plateau wetland was estimated by the Tomlinson Pollution Load Index (PLI) method. The analyzed results indicated that the average contents of Cd, Hg, As, Pb, Cr, Cu, Zn were 0.985, 0.345, 15.8, 38.9, 38.6, 22.8 and 384 mg x kg(-1), respectively. The heavy metal distributions varied with regional environment changes, the order of average contents of Cd and Hg in different regions was E (the eastern region) > S (the southern region) > N (the northern region), the order of the average content of Pb was N > E > S, and that of Zn was S > E > N. The results also suggested a medium heavy metal pollution level in the surface sediment of the Caohai plateau wetland with the PLI(zone) reaching 1.17. The order of pollution level in surface sediments of different regions was E > S > N. The results showed medium pollution levels in E and Hg which reached the extreme intensity pollution level were also the major polluted elements in surface sediments of the Caohai plateau wetland. And also, results showed medium pollution levels of Cd and Pb in surface sediments of Caohai plateau wetland. Cluster analysis results showed similar pollution sources of Cd, Zn, Pb and Hg, which should be attached great importance in terms of the prevention of the Caohai plateau wetland.

Reconstruction of Oceanographic Changes Based on the Diatom Records of the Central Okhotsk Sea over the last 500000 Years

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Wei-Lung Wang Liang-Chi Wang

2008-01-01

Full Text Available This study provides insight into changes in sea ice conditions and the oceanographic environment over the past 500 kyr through analysis of the diatom record. Based on the relative abundance of 13 diatoms species in piston core MD012414, four types of environmental conditions in the central Okhotsk Sea over the last 330 ka BP have been distinguished: (1 open-ocean alternating with seasonal sea-ice cover in Stages 9, 5, and 1; (2 almost open-ocean free of sea-ice cover in Stages 7 and 3; (3 perennial sea-ice cover in Stages 6, 4, and 2; and (4 a warm ice-age dominated by open ocean assemblages in Stage 8. The littoral diatom species, Paralia sulcata, showed a sudden increase from the glacial period to the nterglacial period over the last 330 ka BP, except during Stage 8. Such a result implies that melting sea-ice transported terrigenous materials from the north Okhotsk Sea continental shelves to the central ocean during eglaciation. From Stage 13 to Stage 10, however, cold and warm marine conditions unexpectedly occurred in the late interglacial periods and the glacial periods, respectively. One possible reason for this is a lack of age control points from Stage 13 to Stage 10, and the different sediment accumulation rates between glacial and interglacial periods. This study suggests not only the process by which oceanographic variation of sea ice occurred, but also new significance for Paralia sulcata as an indicator in the diatom record of the Okhotsk Sea.

Automated Diatom Classification (Part A: Handcrafted Feature Approaches

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Gloria Bueno

2017-07-01

Full Text Available This paper deals with automatic taxa identification based on machine learning methods. The aim is therefore to automatically classify diatoms, in terms of pattern recognition terminology. Diatoms are a kind of algae microorganism with high biodiversity at the species level, which are useful for water quality assessment. The most relevant features for diatom description and classification have been selected using an extensive dataset of 80 taxa with a minimum of 100 samples/taxon augmented to 300 samples/taxon. In addition to published morphological, statistical and textural descriptors, a new textural descriptor, Local Binary Patterns (LBP, to characterize the diatom’s valves, and a log Gabor implementation not tested before for this purpose are introduced in this paper. Results show an overall accuracy of 98.11% using bagging decision trees and combinations of descriptors. Finally, some phycological features of diatoms that are still difficult to integrate in computer systems are discussed for future work.

What if the Diatoms of the Deep Chlorophyll Maximum Can Ascend?

Science.gov (United States)

Villareal, T. A.

2016-02-01

Buoyancy regulation is an integral part of diatom ecology via its role in sinking rates and is fundamental to understanding their distribution and abundance. Numerous studies have documented the effects of size and nutrition on sinking rates. Many pelagic diatoms have low intrinsic sinking rates when healthy and nutrient-replete (deep chlorophyll maximum. The potential for ascending behavior adds an additional layer of complexity by allowing both active depth regulation similar to that observed in flagellated taxa and upward transport by some fraction of deep euphotic zone diatom blooms supported by nutrient injection. In this talk, I review the data documenting positive buoyancy in small diatoms, offer direct visual evidence of ascending behavior in common diatoms typical of both oceanic and coastal zones, and note the characteristics of sinking rate distributions within a single species. Buoyancy control leads to bidirectional movement at similar rates across a wide size spectrum of diatoms although the frequency of ascending behavior may be only a small portion of the individual species' abundance. While much remains to be learned, the paradigm of unidirectional downward movement by diatoms is both inaccurate and an oversimplification.

Laminae type and possible mechanisms for the formation of laminated sediments in the Shaban Deep, northern Red Sea

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I. A. Seeberg-Elverfeldt

2005-01-01

Full Text Available Laminated sediments in the Shaban Deep, a brine-filled basin in the northern Red Sea, were analyzed with backscattered electron imagery. Here we present possible mechanisms involved in the formation of laminae of various types and homogenous intervals arising from the detailed investigation of multicore GeoB 7805-1 (26°13.9' N and 35°22.6' E; water depth 1447 m and gravity core GeoB 5836-2 (26°12.61' N, 35°21.56' E; water depth 1475 m. Sediment makeup includes six types: a a laminated structure with alternating light (mainly coccoliths and dark (diatom frustules layers, where the diatom component is indicative of the intra-annual variability between stratification and mixing events; b a pocket-like structure attributed to the sinking of particles within fecal pellets and aggregates; c a matrix of tightly packed diatoms that relates to extended stratification/mixing periods of the water column; d homogenous intervals that result from turbidity deposition; e silt accumulations which origin may lie in agglutinated foraminifers; and f pyrite layers with pyrite formation initiated at the seawater-brine interface.

Diatom species composition and indices for determining the ecological status of coastal Mediterranean Spanish lakes

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Antón-Garrido, Beatriz

2013-12-01

Full Text Available Diatom indices have been used and tested mainly for assessing the ecological status of rivers and deep lakes, but there are scarce studies that determine their effectiveness in shallow lakes and in coastal Mediterranean lakes. This study evaluates the validity of several common diatom indices (SPI, BDI, CEC and TDIL for the determination of the ecological quality of three coastal lakes (Valencia, Spain and presents descriptions and ecological data of the main diatom species recorded. Diatom samples were collected from phytobenthos, both from epiphyton of the dominant submerged macrophytes and the sediment. The ecological status of the systems was determined according to different physico-chemical variables and was compared with the results obtained from epiphytic diatom communities. The results showed discrepancies among diatom indices and also with the state determined by the environmental variables. The effectiveness of the indices depended on the number of species assessed for each index with respect to the total species recorded and the suitability of the weight assigned to each species. The results reveal the need to gather more information about the composition and ecology of the diatoms and microalgae characteristic of coastal Mediterranean standing waters. This work contributes to their better knowledge.Los índices de diatomeas han sido aplicados y contrastados principalmente en la evaluación del estado ecológico de los sistemas lóticos y lagos profundos, pero son escasos los estudios sobre su eficacia en lagos someros y lagunas litorales mediterráneas. Este trabajo evalúa la validez de varios índices conocidos de diatomeas (IPS, IBD, CEE y TDIL para la determinación de la calidad ecológica de tres lagunas litorales (Valencia, España y presenta las descripciones y datos ecológicos de las principales especies de diatomeas registradas. Las muestras de diatomeas se recogieron del fitobentos, tanto del epifiton desarrollado sobre

Spatial distribution and source apportionment of PFASs in surface sediments from five lake regions, China.

Science.gov (United States)

Qi, Yanjie; Huo, Shouliang; Xi, Beidou; Hu, Shibin; Zhang, Jingtian; He, Zhuoshi

2016-03-07

Perfluoroalkyl substances (PFASs) have been found in environment globally. However, studies on PFAS occurrence in sediments of lakes or reservoirs remain relatively scarce. In this study, two hundred and sixty-two surface sediment samples were collected from forty-eight lakes and two reservoirs all over China. Average PFAS concentrations in surface sediments from each lake or reservoir varied from 0.086 ng/g dw to 5.79 ng/g dw with an average of 1.15 ng/g dw. Among five lake regions, average PFAS concentrations for the lakes from Eastern Plain Region were the highest. Perfluorooctanoic acid, perfluoroundecanoic acid and perfluorooctane sulfonic acid (PFOS) were the predominant PFASs in surface sediments. The significant positive correlations between PFAS concentrations and total organic carbon, total nitrogen and total phosphorus contents in sediments revealed the influences of sedimentary characteristics on PFAS occurrence. A two-dimensional hierarchical cluster analysis heat map was depicted to analyze the possible origins of sediments and individual PFAS. The food-packaging, textile, electroplating, firefighting and semiconductor industry emission sources and the precious metals and coating industry emission sources were identified as the main sources by two receptor models, with contributions of 77.7 and 22.3% to the total concentrations of C4-C14- perfluoroalkyl carboxylic acids and PFOS, respectively.

Diatom-based water quality monitoring in southern Africa ...

African Journals Online (AJOL)

The purpose of this review is to summarise the challenges and future prospects associated with biological water quality monitoring using diatoms with special focus on southern Africa. Much work still needs to be carried out on diatom tolerances, ecological preferences and ecophysiology. It is recommended that past ...

Trace metal pollution assessment in the surface sediments of nearshore area, off Calicut, southwest coast of India.

Science.gov (United States)

Srinivas, Reji; Shynu, R; Sreeraj, M K; Ramachandran, K K

2017-07-15

Metal concentrations (Al, Cr, Ni, Cu, Zn, and Pb), grain size, and total organic carbon content in 29 surface sediment samples from the nearshore area off Calicut were analyzed to determine their distribution and pollution status. Surface sediments were dominantly silts with low percentage of clay and sand at nearshore and offshore areas. The mean metal concentrations were in the following order: Cr>Ni>Zn>Pb>Cu. The enrichment factor and geo-accumulation index of metals suggest that the surface sediments were not polluted by Zn and moderately polluted by Cu and Ni. By contrast, Cr and Pb showed significant enrichment levels. Results from a multivariate statistical analysis suggested that the spatial enrichment of these heavy metals was related to sediment type. Thus, the sediment distribution and their metal enrichment were mainly controlled by local hydrodynamic conditions that caused the winnowing of fine-grained sediments. Copyright © 2017. Published by Elsevier Ltd.

Surface Sediment Analysis on Petroleum Hydrocarbon and Total Organic Carbon from Coastal Area of Papar to Tuaran, Sabah

International Nuclear Information System (INIS)

Siti Aishah Mohd Ali; Payus, C.; Masni Mohd Ali

2015-01-01

Total petroleum hydrocarbons (TPH) and total organic carbon (TOC) were investigated in surface sediments along coastal area of Papar to Tuaran, Sabah. Surface sediment samples were collected in 24 different stations in each area by using Ponar grab sampler. Samples were extracted for TPH using standard method sediment/ sludge APHA 5520E and analyzed using UV/VIS spectrophotometer while for TOC method analysis using United Nations Environment Programme (UNEP)/ MAP Athens (2006). The range of TPH concentrations in surface sediments were recorded at 0.24 - 20.65 mg/ kg dw Miri crude oil equivalents, meanwhile the TOC percentage ranged from 0.03 - 4.02 %. In the mean time, the statistical analysis by Pearson correlation showed a positive correlation with coefficient, r = 0.790 which showing the TPH concentrations significantly have influence on the TOC accumulations in the surface sediment. (author)

In vivo exposure to northern diatoms arrests sea urchin embryonic development.

Science.gov (United States)

Gudimova, Elena; Eilertsen, Hans C; Jørgensen, Trond Ø; Hansen, Espen

2016-01-01

There are numerous reports indicating that marine diatoms may act harmful to early developmental stages of invertebrates. It is believed that the compounds responsible for these detrimental effects are oxylipins resulting from oxidized polyunsaturated fatty acids, and that they may function as grazing deterrents. Most studies reporting these effects have exposed test organisms to diatom extracts or purified toxins, but data from in vivo exposure to intact diatoms are scarce. We have conducted sea urchin egg incubation and plutei feeding experiments to test if intact diatom cells affected sea urchin embryo development and survival. This was done by exposing the common northern sea urchins Strongylocentrotus droebachiensis and Echinus acutus to northern strains of the diatoms Chaetoceros socialis, Skeletonema marinoi, Chaetoceros furcellatus, Attheya longicornis, Thalassiosira gravida and Porosira glacialis. The intact diatom cell suspensions were found to inhibit sea urchin egg hatching and embryogenesis. S. marinoi was the most potent one as it caused acute mortality in S. droebachiensis eggs after only four hours exposure to high (50 μg/L Chla) diatom concentrations, as well as 24 h exposure to normal (20 μg/L Chla) and high diatom concentrations. The second most potent species was T. gravida that caused acute mortality after 24 h exposure to both diatom concentrations. A. longicornis was the least harmful of the diatom species in terms of embryo development arrestment, and it was the species that was most actively ingested by S. droebachiensis plutei. Copyright © 2015 The Authors. Published by Elsevier Ltd.. All rights reserved.

The genome of the diatom Thalassiosira pseudonana: Ecology,evolution, and metabolism

Energy Technology Data Exchange (ETDEWEB)

Ambrust, E.V.; Berges, J.; Bowler, C.; Green, B.; Martinez, D.; Putnam, N.; Zhou, S.; Allen, A.; Apt, K.; Bechner, M.; Brzezinski, M.; Chaal, B.; Chiovitti, A.; Davis, A.; Goodstein, D.; Hadi, M.; Hellsten,U.; Hildebrand, M.; Jenkins, B.; Jurka, J.; Kapitonov, V.; Kroger, N.; Lau, W.; Lane, T.; Larimer, F.; Lippmeier, J.; Lucas, S.; Medina, M.; Montsant, A.; Obornik, M.; Parker, M. Schnitzler; Palenik, B.; Pazour,G.; Richardson, P.; Rynearson, T.; Saito, M.; Schwartz, D.; Thamatrakoln,K.; Valentin, K.; Vardi, A.; Wilkerson, F.; Rokhsar, D.; Vardi, A.; Wilkerson, F.P.; Rokhsar, D.S.

2004-09-01

Diatoms are unicellular algae with plastids acquired by secondary endosymbiosis. They are responsible for {approx}20% of global carbon fixation. We report the 34 Mbp draft nuclear genome of the marine diatom, Thalassiosira pseudonana and its 129 Kbp plastid and 44 Kbp mitochondrial genomes. Sequence and optical restriction mapping revealed 24 diploid nuclear chromosomes. We identified novel genes for silicic acid transport and formation of silica-based cell walls, high-affinity iron uptake, biosynthetic enzymes for several types of polyunsaturated fatty acids, utilization of a range of nitrogenous compounds and a complete urea cycle, all attributes that allow diatoms to prosper in the marine environment. Diatoms are unicellular, photosynthetic, eukaryotic algae found throughout the world's oceans and freshwater systems. They form the base of short, energetically-efficient food webs that support large-scale coastal fisheries. Photosynthesis by marine diatoms generates as much as 40% of the 45-50 billion tonnes of organic carbon produced each year in the sea (1), and their role in global carbon cycling is predicted to be comparable to that of all terrestrial rainforests combined (2, 3). Over geological time, diatoms may have influenced global climate by changing the flux of atmospheric carbon dioxide into the oceans (4). A defining feature of diatoms is their ornately patterned silicified cell wall or frustule, which displays species-specific nano-structures of such fine detail that diatoms have long been used to test the resolution of optical microscopes. Recent attention has focused on biosynthesis of these nano-structures as a paradigm for future silica nanotechnology (5). The long history (over 180 million years) and dominance of diatoms in the oceans is reflected by their contributions to vast deposits of diatomite, most cherts and a significant fraction of current petroleum reserves (6). As photosynthetic heterokonts, diatoms reflect a fundamentally

Mono Lake sediments preserve a record of recent environmental change

Science.gov (United States)

Meixnerova, J.; Betts, M.; Westacott, S.; Ingalls, M.; Miller, L. G.; Sessions, A. L.; Trower, L.; Geobiology Course, A.

2017-12-01

Modern Mono Lake is a geochemically unique closed-basin, hypersaline soda lake. Since 1941, anthropogenic water diversions have decreased the lake's volume and water level, driving changes in water chemistry and ecology. Mono Lake sediments offer an opportunity to investigate the nature and extent of these changes. We analyzed a 70 cm sediment core from the center of Mono Lake recording the past 116 years of deposition. At the time of recovery, the entire core was dark green. 16S rRNA gene analysis indicated a sedimentary bacterial community dominated by Cyanobacteria. SEM imaging revealed abundant, well-preserved diatom frustules below 10 cm core depth, in contrast they are nearly absent above 10 cm depth. Fatty acid (FAME) biomarkers for diatoms and algal sterols were present throughout the core in varying concentrations. Phytol was exceptionally abundant in the core; ratios of phytol/C-18 FAME were commonly >200. The δ13Corg ranged between -17.5 and -20‰ in the lower 52 cm of the core while the upper part shows significant decrease of δ13Corg to -28‰. We interpret the shift in δ13Corg as an ecological transition from mainly diatoms in the lower core towards the green alga Picocystis, which is the main primary producer today and has a δ13Corg value of -32.5‰. The onset of this change dates back 23 years, which roughly coincides with the highest reported salinity, 88 g/L in 1995. We hypothesize that diatoms gradually became marginalized as a result of hypersaline conditions. We also observed a variety of trends that may be characterized as unique fingerprints of Mono Lake. The unusually high abundance of phytol was consistent with the core's pervasive green coloring and could potentially indicate a higher preservation potential of phytol under alkaline conditions. Throughout the core, δ15Norg fluctuated between +10 and +13‰. Such atypical enrichment in δ15Norg could be explained by NH4 dissociation and subsequent NH3 volatilization under high p

The effects of oil pollution on Antarctic benthic diatom communities over 5 years

International Nuclear Information System (INIS)

Polmear, R.; Stark, J.S.; Roberts, D.; McMinn, A.

2015-01-01

Highlights: • We examine the impact of hydrocarbon pollution on Antarctic benthic diatoms. • The effect of standard synthetic lubricant oil and a biodegradable oil were examined. • There were significant effects from both treatments for over 5 years. • There was little difference between the different types of oil. - Abstract: Although considered pristine, Antarctica has not been impervious to hydrocarbon pollution. Antarctica’s history is peppered with oil spills and numerous abandoned waste disposal sites. Both spill events and constant leakages contribute to previous and current sources of pollution into marine sediments. Here we compare the response of the benthic diatom communities over 5 years to exposure to a commonly used standard synthetic lubricant oil, an alternative lubricant marketed as more biodegradable, in comparison to a control treatment. Community composition varied significantly over time and between treatments with some high variability within contaminated treatments suggesting community stress. Both lubricants showed evidence of significant effects on community composition after 5 years even though total petroleum hydrocarbon reduction reached approximately 80% over this time period. It appears that even after 5 years toxicity remains high for both the standard and biodegradable lubricants revealing the temporal scale at which pollutants persist in Antarctica

The transcriptome and proteome of the diatom Thalassiosira pseudonana reveal a diverse phosphorus stress response.

Directory of Open Access Journals (Sweden)

Sonya T Dyhrman

Full Text Available Phosphorus (P is a critical driver of phytoplankton growth and ecosystem function in the ocean. Diatoms are an abundant class of marine phytoplankton that are responsible for significant amounts of primary production. With the control they exert on the oceanic carbon cycle, there have been a number of studies focused on how diatoms respond to limiting macro and micronutrients such as iron and nitrogen. However, diatom physiological responses to P deficiency are poorly understood. Here, we couple deep sequencing of transcript tags and quantitative proteomics to analyze the diatom Thalassiosira pseudonana grown under P-replete and P-deficient conditions. A total of 318 transcripts were differentially regulated with a false discovery rate of <0.05, and a total of 136 proteins were differentially abundant (p<0.05. Significant changes in the abundance of transcripts and proteins were observed and coordinated for multiple biochemical pathways, including glycolysis and translation. Patterns in transcript and protein abundance were also linked to physiological changes in cellular P distributions, and enzyme activities. These data demonstrate that diatom P deficiency results in changes in cellular P allocation through polyphosphate production, increased P transport, a switch to utilization of dissolved organic P through increased production of metalloenzymes, and a remodeling of the cell surface through production of sulfolipids. Together, these findings reveal that T. pseudonana has evolved a sophisticated response to P deficiency involving multiple biochemical strategies that are likely critical to its ability to respond to variations in environmental P availability.

Distribution and sources of n-alkanes in surface sediments of Taihu Lake, China

Directory of Open Access Journals (Sweden)

Yu Yunlong

2016-03-01

Full Text Available The last study on n-alkanes in surface sediments of Taihu Lake was in 2000, only 13 surface sediment samples were analysed, in order to have a comprehensive and up-to-date understanding of n-alkanes in the surface sediments of Taihu Lake, 41 surface sediment samples were analyzed by GC-MS. C10 to C37 were detected, the total concentrations of n-alkanes ranged from 2109 ng g−1 to 9096 ng g−1 (dry weight. There was strong odd carbon predominance in long chain n-alkanes and even carbon predominance in short chain n-alkanes. When this finding was combined with the analysis results of wax n-alkanes (WaxCn, carbon preference index (CPI, unresolved complex mixture (UCM, hopanes and steranes, it was considered that the long chain n-alkanes were mainly from terrigenous higher plants, and that the short chain n-alkanes mainly originated from bacteria and algae in the lake, compared with previous studies, there were no obvious anthropogenic petrogenic inputs. Terrestrial and aquatic hydrocarbons ratio (TAR and C21−/C25+ indicated that terrigenous input was higher than aquatic sources and the nearshore n-alkanes were mainly from land-derived sources. Moreover, the distribution of short chain n-alkanes presented a relatively uniform pattern, while the long chain n-alkanes presented a trend that concentrations dropped from nearshore places to the middle of lake.

Problems and Possible Solutions Concerning Radiocarbon Dating of Surface Marine Sediments, Ross Sea, Antarctica

Science.gov (United States)

Andrews, John T.; Domack, Eugene W.; Cunningham, Wendy L.; Leventer, Amy; Licht, Kathy J.; Jull, A. J. Timothy; DeMaster, David J.; Jennings, Anne E.

1999-09-01

Radiocarbon accelerator mass spectrometric (AMS) dates on the acid-insoluble fraction from 38 core tops from the western Ross Sea, Antarctica, are used to address these questions: (1) What are the apparent ages of sediments at or close to the present sediment/water interface? (2) Is there a statistically significant pattern to the spatial distribution of core top ages? and (3) Is there a "correction factor" that can be applied to these age determinations to obtain the best possible Holocene (downcore) chronologies? Ages of core top sediments range from 2000 to 21,000 14C yr B.P. Some "old" core top dates are from piston cores and probably represent the loss of sediment during the coring process, but some core top samples >6000 14C yr B.P. may represent little or no Holocene deposition. Four possible sources of variability in dates ≤6000 14C yr B.P. (n = 28) are associated with (1) different sample preparation methods, (2) different sediment recovery systems, (3) different geographic regions, and (4) within-sample lateral age variability. Statistical analysis on an a posteriori design indicates that geographic area is the major cause of variability; there is a difference in mean surface sediment age of nearly 2000 yr between sites in the western Ross Sea and sites east of Ross Bank in south-central Ross Sea. The systematic variability in surface age between areas may be attributed to: (a) variable sediment accumulation rates (SAR) (surface age is inversely related to SAR), (b) differences in the percentage of reworked (dead) carbon between each area, and/or (c) differences in the CO2 exchange between the ocean and the atmosphere.

A new diatom growth inhibition assay using the XTT colorimetric method.

Science.gov (United States)

Jiang, Weina; Akagi, Takuya; Suzuki, Hidekazu; Takimoto, Ayaka; Nagai, Hiroshi

2016-01-01

Marine biofouling, which leads to significant operational stress and economic damage on marine infrastructures, is a major problem in marine related industries. Currently, the most common way to avoid marine biofouling involves the use of biocidal products in surface coatings. However, the need for environmentally friendly antibiofouling compounds has increased rapidly with the recent global prohibition of harmful antifoulants, such as tributyltin (TBT). In particular, periphytic diatoms have been shown to contribute significantly to biofilms, which play an important role in biofouling. Therefore, inhibiting the proliferation of fouling diatoms is a very important step in the prevention of marine biofouling. In this study, we developed a new, rapid, accurate, and convenient growth inhibition assay using the XTT colorimetric method to prevent the growth of the fouling periphytic diatom, Nitzschia amabilis Hidek. Suzuki (replaced synonym, Nitzschia laevis Hustedt). The feasibility of this method was verified by determining the growth inhibition activities of two standard photosynthetic inhibitors, DCMU and CuSO4. However, neither inhibitor had any cytotoxic activities at the range of concentrations tested. Moreover, this method was applied by screening and purification of herbicidic but non-cytotoxic compounds from cyanobacteria extracts. Our results demonstrate the utility of this newly established growth inhibition assay for the identification of marine anti-biofouling compounds. Copyright © 2016 Elsevier Inc. All rights reserved.

Multiproxy records of Holocene climate and glacier variability from sediment cores in the Cordillera Vilcabamba of southern Peru

Science.gov (United States)

Schweinsberg, A. D.; Licciardi, J. M.; Rodbell, D. T.; Stansell, N.; Tapia, P. M.

2012-12-01

Sediments contained in glacier-fed lakes and bogs provide continuous high-resolution records of glacial activity, and preserve multiproxy evidence of Holocene climate change. Tropical glacier fluctuations offer critical insight on regional paleoclimatic trends and controls, however, continuous sediment records of past tropical climates are limited. Recent cosmogenic 10Be surface exposure ages of moraine sequences in the Cordillera Vilcabamba of southern Peru (13°20'S latitude) reveal a glacial culmination during the early Holocene and a less extensive glaciation coincident with the Little Ice Age of the Northern Hemisphere. Here we supplement the existing 10Be moraine chronology with the first continuous records of multiproxy climate data in this mountain range from sediment cores recovered from bogs in direct stratigraphic contact with 10Be-dated moraines. Radiocarbon-dated sedimentological changes in a 2-meter long bog core reveal that the Holocene is characterized by alternating inorganic and organic-rich laminae, suggesting high-frequency climatic variability. Carbon measurements, bulk density, and bulk sedimentation rates are used to derive a record of clastic sediment flux that serves as a proxy indicator of former glacier activity. Preliminary analyses of the bog core reveal approximately 70 diatom taxa that indicate both rheophilic and lentic environments. Initial results show a general decrease in magnetic susceptibility and clastic flux throughout the early to mid-Holocene, which suggests an interval of deglaciation. An episode of high clastic flux from 3.8 to 2.0 ka may reflect a late Holocene glacial readvance. Volcanic glass fragments and an anomalous peak in magnetic susceptibility may correspond to the historical 1600 AD eruption of Huaynaputina. Ten new bog and lake sediment cores were collected during the 2012 field expedition and analytical measurements are underway. Ongoing efforts are focused on analyzing diatom assemblage data, developing

Soliton solutions in a diatomic lattice system

International Nuclear Information System (INIS)

Yajima, Nobuo; Satsuma, Junkichi.

1979-04-01

A continuum limit is considered for a diatomic lattice system with a cubic nonlinearity. A long wave equation describing the interaction of acoustic and optical modes is obtained. It reduces, in certain approximations, to equations having coupled wave solutions. The solutions exhibit trapping of an optical mode by an acoustic soliton. The form of the trapped optical wave depends on the mass ratio of adjacent particles in the diatomic lattice. (author)

Asymptotically exact calculation of the exchange energies of one-active-electron diatomic ions with the surface integral method

International Nuclear Information System (INIS)

Scott, Tony C; Aubert-Frecon, Monique; Hadinger, Gisele; Andrae, Dirk; Grotendorst, Johannes; III, John D Morgan

2004-01-01

We present a general procedure, based on the Holstein-Herring method, for calculating exactly the leading term in the exponentially small exchange energy splitting between two asymptotically degenerate states of a diatomic molecule or molecular ion. The general formulae we have derived are shown to reduce correctly to the previously known exact results for the specific cases of the lowest Σ and Π states of H + 2 . We then apply our general formulae to calculate the exchange energy splittings between the lowest states of the diatomic alkali cations K + 2 , Rb + 2 and Cs + 2 , which are isovalent to H + 2 . Our results are found to be in very good agreement with the best available experimental data and ab initio calculations

Automated Measurement for Sensitivity Analysis of Runoff-Sediment Load at Varying Surface Gradients

Directory of Open Access Journals (Sweden)

Imanogor P.A.

2015-07-01

Full Text Available Direct measurement of surface runoff is often associated with errors and inaccuracies which results to unreliable hydrological data. An automatic Runoff-meter using tipping buckets arrangement calibrated to tip 0.14 liter of runoff water per tip with an accuracy of ± 0.001 litre was used to measure surface runoff from a steel bounded soil tray of dimension (1200 mm X 900 mm X 260 mm filled with sand loamy to the depth of 130 mm and inclined at angle (0 0 , 5 0 ,12 0 and 15 0 horizontal to the instrument. The effect of varying angles of inclination on runoff intensity, sediment loss rate and sediment loss is significant at 5 % confidence level, while surface runoff is not significant at 5 % confidence level. Total highest sediment loss of 458.2 g and 313.4 g were observed at angle 15 0 and 12 0 respectively. Total surface runoff of 361.5 mm and 445.8 mm were generated at inclined angle of 0 0 and 5 0 , while at angle 12 0 and 15 0 , 564.3 mm and 590.0 mm of surface runoff were generated. In addition, runoff intensity and sediment loss rate were highest at angle 15 0 , while the lowest values of 1.5mm/min and 5.43 g/min were obtained at angle of inclination 5 0 . The results showed that strong relationship existed among the hydrological variables as a result of subjecting the steel bounded soil tray to different angles of inclination. Such results would provide useful data for the running of physics-based deterministic model of surface runoff and erosion which will be useful for the design of hydrological structures, land use planning and management.

Sorption processes affecting arsenic solubility in oxidized surface sediments from Tulare Lake Bed, California

Science.gov (United States)

Gao, S.; Goldberg, S.; Herbel, M.J.; Chalmers, A.T.; Fujii, R.; Tanji, K.K.

2006-01-01

Elevated concentrations of arsenic (As) in shallow groundwater in Tulare Basin pose an environmental risk because of the carcinogenic properties of As and the potential for its migration to deep aquifers that could serve as a future drinking water source. Adsorption and desorption are hypothesized to be the major processes controlling As solubility in oxidized surface sediments where arsenate [As(V)] is dominant. This study examined the relationship between sorption processes and arsenic solubility in shallow sediments from the dry Tulare Lake bed by determining sorption isotherms, pH effect on solubility, and desorption-readsorption behavior (hysteresis), and by using a surface complexation model to describe sorption. The sediments showed a high capacity to adsorb As(V). Estimates of the maximum adsorption capacity were 92 mg As kg- 1 at pH 7.5 and 70 mg As kg- 1 at pH 8.5 obtained using the Langmuir adsorption isotherm. Soluble arsenic [> 97% As(V)] did not increase dramatically until above pH 10. In the native pH range (7.5-8.5), soluble As concentrations were close to the lowest, indicating that As was strongly retained on the sediment. A surface complexation model, the constant capacitance model, was able to provide a simultaneous fit to both adsorption isotherms (pH 7.5 and 8.5) and the adsorption envelope (pH effect on soluble As), although the data ranges are one order of magnitude different. A hysteresis phenomenon between As adsorbed on the sediment and As in solution phase was observed in the desorption-readsorption processes and differs from conventional hysteresis observed in adsorption-desorption processes. The cause is most likely due to modification of adsorbent surfaces in sediment samples upon extensive extractions (or desorption). The significance of the hysteresis phenomenon in affecting As solubility and mobility may be better understood by further microscopic studies of As interaction mechanisms with sediments subjected to extensive leaching

Isolation of diatom Navicula cryptocephala and characterization of ...

African Journals Online (AJOL)

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synthesis to the storage of neutral lipids (Qiang et al.,. 2008). Diatoms were shown ... chemical analysis of the oil inside diatom oil droplets, a method for separating ... 120°C for 20 min. 0.1 mg.L. −1. Thiamine, 0.5 μg.L. −1. Biotin and 0.5 μg.L−1.

Marennine, Promising Blue Pigments from a Widespread Haslea Diatom Species Complex

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Romain Gastineau

2014-05-01

Full Text Available In diatoms, the main photosynthetic pigments are chlorophylls a and c, fucoxanthin, diadinoxanthin and diatoxanthin. The marine pennate diatom Haslea ostrearia has long been known for producing, in addition to these generic pigments, a water-soluble blue pigment, marennine. This pigment, responsible for the greening of oysters in western France, presents different biological activities: allelopathic, antioxidant, antibacterial, antiviral, and growth-inhibiting. A method to extract and purify marennine has been developed, but its chemical structure could hitherto not be resolved. For decades, H. ostrearia was the only organism known to produce marennine, and can be found worldwide. Our knowledge about H. ostrearia-like diatom biodiversity has recently been extended with the discovery of several new species of blue diatoms, the recently described H. karadagensis, H. silbo sp. inedit. and H. provincialis sp. inedit. These blue diatoms produce different marennine-like pigments, which belong to the same chemical family and present similar biological activities. Aside from being a potential source of natural blue pigments, H. ostrearia-like diatoms thus present a commercial potential for aquaculture, cosmetics, food and health industries.

Diatom diet selectivity by early post-larval abalone Haliotis diversicolor supertexta under hatchery conditions

Science.gov (United States)

Zhang, Yuyu; Gao, Yahui; Liang, Junrong; Chen, Changping; Zhao, Donghai; Li, Xuesong; Li, Yang; Wu, Wenzhong

2010-11-01

Benthic diatoms constitute the primary diet of abalone during their early stages of development. To evaluate the dietary preferences of early post-larval abalone, Haliotis diversicolor supertexta, we analyzed the gut contents of post-larvae that settled on diatom films. We compared the abundance and species diversity of diatom assemblages in the gut to those of the epiphytic diatom assemblages on the attachment films, and identified 40 benthic diatom species in the gut contents of post-larvae 12 to 24 d after settlement. The most abundant taxa in the gut contents were Navicula spp., Amphora copulate, and Amphora coffeaeformis. Navicula spp. accounted for 64.0% of the cell density. In the attachment films, we identified 110 diatom species belonging to 38 genera. Pennate diatoms were the dominant members including the species Amphiprora alata, Cocconeis placentula var. euglypta, Cylindrotheca closterium, Navicula sp. 2, and A. coffeaeformis. Nano-diatoms (abalone seed. The difference of the composition and abundance of diatoms between in the guts and on the biofilms suggests that early post-larval grazing was selective. An early post-larval abalone preferred nano-diatoms and the genera Navicula and Amphora during the month after settlement.

Occurrence and profiles of organic sun-blocking agents in surface waters and sediments in Japanese rivers and lakes

International Nuclear Information System (INIS)

Kameda, Yutaka; Kimura, Kumiko; Miyazaki, Motonobu

2011-01-01

Sun-blocking agents including eight UV filters (UVF) and 10 UV light stabilizers (UVLS) were measured in water and sediment collected from 22 rivers, four sewage treatment plant effluents (STPE) and three lakes in Japan. Total sun blocking agents levels ranged from N.D. to 4928 ng/L and from 2.0 to 3422 μg/kg dry wt in surface water and in sediment, respectively. Benzyl salicylate, benzophenone-3, 2-ethyl hexyl-4-methoxycinnamte (EHMC) and octyl salicylate were dominant in surface water receiving wastewater effluents and STPE, although UV-328, benzophenone and EHMC were dominant in other surface water except background sites. Three UVF and nine UVLS were observed from all sediment and their compositions showed similar patterns with UV-328 and UV-234 as the most prevalent compounds. Homosalate, octocrylene, UV-326, UV-327, UV-328 and UV-234 were significantly correlated with Galaxolide in sediments. Concentrations of UV-327 and UV-328 also had strong correlation between those of UV-326 in sediment. - Highlights: → Total sun-blocking agents levels ranged from N.D. to 4928 ng/L in surface water from 29 sampling sites. → The maximum concentration of total sun-blocking agents was 3422 μg/kg dry wt. in sediment. → Residential wastewaters and STPE were considered to be potential sources of UVLS in river and lakes. → Most of sun-blocking agents in sediment were significantly correlated with HHCB. → UV-326 had a strong linear correlation between UV-327 as well as UV-328 in all sediment. - Occurrence of eight UV filters and 10 UV light stabilizers in surface water and sediment were investigated and characterized their compositions in water and sediment.

Carbon content and C:N ratio of transparent exopolymeric particles (TEP) produced by bubbling exudates of diatoms

DEFF Research Database (Denmark)

Mari, Xavier

1999-01-01

The carbon content of transparent exopolymeric particles (TEP) was measured in the laboratory in particles produced by bubbling exudates of the diatom Thalassiosira weissflogii, grown under nitrogen non-limited conditions (N:P = 7). The carbon content of these particles (TEP-C) appears to vary...... a coastal area (Kattegat, Denmark), TEP carbon concentration in the surface mixed layer was on the order of 230 ± 150 µg C l-1. This is high relative to other sources of particulate organic carbon (e.g. phytoplankton) and depending on TEP turnover rates, suggests that TEP is an important pathway...... for dissolved organic carbon in coastal seas. The carbon to nitrogen ratio of TEP was measured from particles formed by bubbling exudates of the diatoms T. weissflogii, Skeletonema costatum, Chaetoceros neogracile and C. affinis. Each of these diatom species was grown under various N:P ratios, from N...

Spatial distribution and source apportionment of PFASs in surface sediments from five lake regions, China

Science.gov (United States)

Qi, Yanjie; Huo, Shouliang; Xi, Beidou; Hu, Shibin; Zhang, Jingtian; He, Zhuoshi

2016-03-01

Perfluoroalkyl substances (PFASs) have been found in environment globally. However, studies on PFAS occurrence in sediments of lakes or reservoirs remain relatively scarce. In this study, two hundred and sixty-two surface sediment samples were collected from forty-eight lakes and two reservoirs all over China. Average PFAS concentrations in surface sediments from each lake or reservoir varied from 0.086 ng/g dw to 5.79 ng/g dw with an average of 1.15 ng/g dw. Among five lake regions, average PFAS concentrations for the lakes from Eastern Plain Region were the highest. Perfluorooctanoic acid, perfluoroundecanoic acid and perfluorooctane sulfonic acid (PFOS) were the predominant PFASs in surface sediments. The significant positive correlations between PFAS concentrations and total organic carbon, total nitrogen and total phosphorus contents in sediments revealed the influences of sedimentary characteristics on PFAS occurrence. A two-dimensional hierarchical cluster analysis heat map was depicted to analyze the possible origins of sediments and individual PFAS. The food-packaging, textile, electroplating, firefighting and semiconductor industry emission sources and the precious metals and coating industry emission sources were identified as the main sources by two receptor models, with contributions of 77.7 and 22.3% to the total concentrations of C4-C14- perfluoroalkyl carboxylic acids and PFOS, respectively.

Fragmentation patterns in the diatom genus Rouxia and their potential for identifying latent depositional hiatuses in the early Pliocene diatomite of the ANDRILL AND-1B core

Science.gov (United States)

Konfirst, M. A.; Scherer, R. P.; Winter, D.; Sjunneskog, C.; Warnock, J.; Kuhn, G.; Niessen, F.; Helling, D.; Magens, D.

2009-04-01

Diatom genera have traditionally been split into two primary groupings based upon the symmetry of the siliceous frustule. Diatoms symmetric about a point are classified as centrics, while those symmetric about a line are classified as pennates. This fundamental difference in shape has consequences for preservation in ice proximal settings, where an overriding ice sheet can create shearing in the upper meters of the sediment column. This leads to preferential breakage in pennate forms, and results in a higher ratio of undamaged centric to pennate frustules (Scherer et al., 2004). Similarly, an ice sheet grounded over highly porous diatomite results in significant diatom fragmentation resulting from normal load compaction. The diatom genus Rouxia is a pennate form with a relatively wide raphe, making it particularly susceptible to breakage during ice advance and retreat, and offering the opportunity to evaluate ice advance stages in sedimentary units where glacial erosion may have removed upper depositional units. In the ANDRILL AND-1B core, a long interval of nearly pure diatomite was recovered from 382.98-459.24 mbsf. Construction of an age model during this interval has relied primarily on age ranges provided by presence or absence of key diatom species. However, questions still remain as to the continuity of deposition. In this study, samples were collected at an average of 50-cm spacing for the length of the long diatom unit as well as for 20 meters of the silica-rich diamictite unit directly overlaying the diatomite. Fragments of specimens from the genus Rouxia were counted and classified into categories based on the size of the fragment in relation to total frustule length. These data were then used to develop a quantitative index, which was examined for changes in fragmentation through time. Preliminary data are presented that indicate increased fragmentation at the top of the section under study, which we interpret to indicate evidence for increased glacial

Novel adenosine 3',5'-cyclic monophosphate dependent protein kinases in a marine diatom

International Nuclear Information System (INIS)

Lin, P.P.C.; Volcani, B.E.

1989-01-01

Two novel adenosine 3',5'-cyclic monophosphate (cAMP) dependent protein kinases have been isolated from the diatom Cylindrotheca fusiformis. The kinases, designated I and II, are eluted from DEAE-Sephacel at 0.10 and 0.15 M NaCl. They have a high affinity for cAMP and are activated by micromolar cAMP. They exhibit maximal activity at 5 mM Mg 2+ and pH 8 with the preferred phosphate donor ATP and phosphate acceptor histone H1. They phosphorylate sea urchin sperm histone H1 on a single serine site in the sequence Arg-Lys-Gly-Ser( 32 P)-Ser-Asn-Ala-Arg and have an apparent M r of 75,000 as determined by gel filtration and sucrose density sedimentation. In the kinase I preparation a single protein band with an apparent M r of about 78,000 is photolabeled with 8-azido[ 32 P]cAMP and is also phosphorylated with [γ- 32 P]ATP in a cAMP-dependent manner, after autoradiography following sodium dodecyl sulfate gel electrophoresis. The rate of phosphorylation of the 78,000-dalton band is independent of the enzyme concentration. The results indicate that (i) these diatom cAMP-dependent protein kinases are monomeric proteins, possessing both the cAMP-binding regulatory and catalytic domains on the same polypeptide chain, (ii) the enzymes do not dissociate into smaller species upon activation by binding cAMP, and (iii) self-phosphorylation of the enzymes by an intrapeptide reaction is cAMP dependent. The two diatom cAMP kinases are refractory to the heat-stable protein kinase modulator from rabbit muscle, but they respond differently to proteolytic degradation and to inhibition by arachidonic acid and several microbial alkaloids

Diuron causes sinking retardation and physiochemical alteration in marine diatoms Thalassiosira pseudonana and Skeletonema marinoi-dohrnii complex.

Science.gov (United States)

Khanam, Mst Ruhina Margia; Shimasaki, Yohei; Hosain, Md Zahangir; Mukai, Koki; Tsuyama, Michito; Qiu, Xuchun; Tasmin, Rumana; Goto, Hiroshi; Oshima, Yuji

2017-05-01

The present research investigated the effect of diuron on sinking rate and the physiochemical changes in two marine diatoms, Thalassiosira pseudonana (single-celled species) and Skeletonema marinoi-dohrnii complex (chain-forming species). The results revealed that the sinking rate of both diatoms exposed to diuron at a level of 50% effective concentration for growth (EC50) decreased significantly compared with the control. Photosynthetic performance (Fv/Fm and PI ABS ) of both diatoms also decreased significantly with diuron exposure. The number of cells per chain in S. marinoi-dohrnii decreased significantly with diuron treatment, but T. pseudonana cell diameter remained stable. Neutral lipid concentration per cell was significantly higher compared with control at 72 h in both diatom species exposed to EC50 level diuron. And water-soluble protein concentration per cell at 72 h was lower than control in the T. pseudonana EC50 group only. These biochemical changes may decrease specific gravity of cells and seems to cause a decreased sinking rate in diatoms. The positive significant correlation between the numbers of cells per chain and sinking rate in S. marinoi-dohrnii indicated that chain length is also an important factor in sinking rate regulation for chain-forming diatoms. Thus, our present study suggested that suppression of photosynthetic performance and the resultant physiochemical changes induced the decreased sinking rate that may inhibit the normal survival strategy (avoidance from the surface layer where strong light either causes photo-inhibition or interrupts resting cell formation). Therefore, the use of antifouling agents should be considered for the sustainable marine environment. Copyright © 2017 Elsevier Ltd. All rights reserved.

Acidification counteracts negative effects of warming on diatom silicification

KAUST Repository

Coello-Camba, Alexandra; Agusti, Susana

2016-01-01

Diatoms are a significant group contributing up to 40 % of annual primary production in the oceans. They have a special siliceous cell wall that, acting as a ballast, plays a key role in the sequestration of global carbon and silica. Diatoms dominate primary production in the Arctic Ocean, where global climate change is causing increases in water temperature and in the partial pressure of CO2 (pCO2). Here we show that as water temperature increases diatoms become stressed, grow to smaller sizes, and decrease their silicification rates. But at higher pCO2, as the pH of seawater decreases, silica incorporation rates are increased. In a future warmer Arctic ocean diatoms may have a competitive advantage under increased ocean acidification, as increased pCO2 counteracts the adverse effects of increasing temperature on silicification and buffers its consequences in the biogeochemical cycles of carbon and silica.

Acidification counteracts negative effects of warming on diatom silicification

KAUST Repository

Coello-Camba, Alexandra

2016-10-24

Diatoms are a significant group contributing up to 40 % of annual primary production in the oceans. They have a special siliceous cell wall that, acting as a ballast, plays a key role in the sequestration of global carbon and silica. Diatoms dominate primary production in the Arctic Ocean, where global climate change is causing increases in water temperature and in the partial pressure of CO2 (pCO2). Here we show that as water temperature increases diatoms become stressed, grow to smaller sizes, and decrease their silicification rates. But at higher pCO2, as the pH of seawater decreases, silica incorporation rates are increased. In a future warmer Arctic ocean diatoms may have a competitive advantage under increased ocean acidification, as increased pCO2 counteracts the adverse effects of increasing temperature on silicification and buffers its consequences in the biogeochemical cycles of carbon and silica.

Great differences in the critical erosion threshold between surface and subsurface sediments: A field investigation of an intertidal mudflat, Jiangsu, China

Science.gov (United States)

Shi, Benwei; Wang, Ya Ping; Wang, Li Hua; Li, Peng; Gao, Jianhua; Xing, Fei; Chen, Jing Dong

2018-06-01

Understanding of bottom sediment erodibility is necessary for the sustainable management and protection of coastlines, and is of great importance for numerical models of sediment dynamics and transport. To investigate the dependence of sediment erodibility on degree of consolidation, we measured turbidity, waves, tidal currents, intratidal bed-level changes, and sediment properties on an exposed macrotidal mudflat during a series of tidal cycles. We estimated the water content of surface sediments (in the uppermost 2 cm of sediment) and sub-surface sediments (at 2 cm below the sediment surface). Bed shear stress values due to currents (τc), waves (τw), and combined current-wave action (τcw) were calculated using a hydrodynamic model. In this study, we estimate the critical shear stress for erosion using two approaches and both of them give similar results. We found that the critical shear stress for erosion (τce) was 0.17-0.18 N/m2 in the uppermost 0-2 cm of sediment and 0.29 N/m2 in sub-surface sediment layers (depth, 2 cm), as determined by time series of τcw values and intratidal bed-level changes, and values of τce, obtained using the water content of bottom sediments, were 0.16 N/m2 in the uppermost 2 cm and 0.28 N/m2 in the sub-surface (depth, 2 cm) sediment. These results indicate that the value of τce for sub-surface sediments (depth, 2 cm) is much greater than that for the uppermost sediments (depth, 0-2 cm), and that the τce value is mainly related to the water content, which is determined by the extent of consolidation. Our results have implications for improving the predictive accuracy of models of sediment transport and morphological evolution, by introducing variable τce values for corresponding sediment layers, and can also provide a mechanistic understanding of bottom sediment erodibility at different sediment depths on intertidal mudflats, as related to differences in the consolidation time.

Automated Diatom Analysis Applied to Traditional Light Microscopy: A Proof-of-Concept Study

Science.gov (United States)

Little, Z. H. L.; Bishop, I.; Spaulding, S. A.; Nelson, H.; Mahoney, C.

2017-12-01

Diatom identification and enumeration by high resolution light microscopy is required for many areas of research and water quality assessment. Such analyses, however, are both expertise and labor-intensive. These challenges motivate the need for an automated process to efficiently and accurately identify and enumerate diatoms. Improvements in particle analysis software have increased the likelihood that diatom enumeration can be automated. VisualSpreadsheet software provides a possible solution for automated particle analysis of high-resolution light microscope diatom images. We applied the software, independent of its complementary FlowCam hardware, to automated analysis of light microscope images containing diatoms. Through numerous trials, we arrived at threshold settings to correctly segment 67% of the total possible diatom valves and fragments from broad fields of view. (183 light microscope images were examined containing 255 diatom particles. Of the 255 diatom particles present, 216 diatoms valves and fragments of valves were processed, with 170 properly analyzed and focused upon by the software). Manual analysis of the images yielded 255 particles in 400 seconds, whereas the software yielded a total of 216 particles in 68 seconds, thus highlighting that the software has an approximate five-fold efficiency advantage in particle analysis time. As in past efforts, incomplete or incorrect recognition was found for images with multiple valves in contact or valves with little contrast. The software has potential to be an effective tool in assisting taxonomists with diatom enumeration by completing a large portion of analyses. Benefits and limitations of the approach are presented to allow for development of future work in image analysis and automated enumeration of traditional light microscope images containing diatoms.

Application of a surface complexation model to the interactions of Pu and Am with Esk Estuary sediments

International Nuclear Information System (INIS)

Turner, D.R.; Knox, S.; Titley, J.G.; Hamilton-Taylor, J.; Kelly, M.; Williams, G.

1990-10-01

Previous work has shown that Pu is remobilised from Esk sediments at low salinities of overlying water. A constant capacitance surface complexation model has been developed in order to understand and model the chemical processes occurring. The model is based on detailed chemical characterisation of sediment samples from the estuary. The following measurements were carried out to provide input parameters for the model: specific surface area; total surface sites (tritium exchange); proton and major ion exchange (potentiometric titration); and actinide (Pu and Am) partition coefficient as a function of pH and salinity at sediment and actinide concentrations typical of the Esk. (author)

Fluxes of diatoms in the Dona Paula Bay, west coast of India

Digital Repository Service at National Institute of Oceanography (India)

Garg, A.; Bhaskar, P.V.

of POC and diatom carbon was 251 and 0.39 mg C m sup(-2) day sup(-1), respectively. The diatom carbon accounted for 0.15% of the POC flux. Mass flux of diatoms showed significant negative correlation with the concentration of nitrate and phosphate...

Seasonal effects of cadmium accumulation in periphytic diatom communities of freshwater biofilms

International Nuclear Information System (INIS)

Thi Thuy Duong; Morin, Soizic; Herlory, Olivier; Feurtet-Mazel, Agnes; Coste, Michel; Boudou, Alain

2008-01-01

The relationships between diatom species and cadmium (Cd) accumulated in biofilms of the Riou-Mort River (SW, France) were studied in July 2004 and March 2005. Biofilms were sampled from artificial substrates immersed along a metallic pollution gradient during 20 days. Dynamics of diatom communities and cadmium accumulation were followed by collecting samples after 4, 7, 14 and 20 days of biofilm colonization. Cd accumulation in biofilms during experiment was significantly higher in Cd polluted station (Joanis) than in reference station (Firmi) for both seasons. Periphytic diatom composition varied between sites and seasons. At Firmi station, seasonal dynamics of diatom communities were stable with the dominance of Cyclotella meneghiniana and Melosira varians in July and Surirellabrebissonnii and Navicula gregaria in March. At Joanis station, diatom communities mainly responded to high levels of metal by a high proportion of small, adnate species. Positive correlations between Eolimna minima, Nitzschia palea, Encyonema minutum, Surirella angusta, and Gomphonema parvulum and cadmium accumulation were observed, indicating that these species are tolerant to high levels of cadmium. On the other hand, negative correlations of C. meneghiniana, N. gregaria, Navicula lanceolata, M. varians and Nitzschia dissipata with cadmium qualify them as sensitive diatom species. Periphytic diatom composition through the presence of specific species highlight metal tolerant indicator diatom groups which will be meaningful for biomonitoring pollution in natural aquatic systems

Seasonal effects of cadmium accumulation in periphytic diatom communities of freshwater biofilms

Energy Technology Data Exchange (ETDEWEB)

Thi Thuy Duong [Institute of Environmental Technology, Vietnamese Academy of Science and Technology, 18 Hoang Quoc Viet Road, Cau Giay, Hanoi (Viet Nam); Universite de Bordeaux 1, CNRS, UMR 5805 EPOC, Place du Dr Peyneau, 33120 Arcachon (France)], E-mail: duongthuy0712@yahoo.com; Morin, Soizic [Cemagref, UR REBX, 50 avenue de Verdun, F-33612 Cestas cedex (France); Herlory, Olivier [Universite de Bordeaux 1, CNRS, UMR 5805 EPOC, Place du Dr Peyneau, 33120 Arcachon (France); Feurtet-Mazel, Agnes [Universite de Bordeaux 1, CNRS, UMR 5805 EPOC, Place du Dr Peyneau, 33120 Arcachon (France)], E-mail: a.feurtet-mazel@epoc.u-bordeaux1.fr; Coste, Michel [Cemagref, UR REBX, 50 avenue de Verdun, F-33612 Cestas cedex (France); Boudou, Alain [Universite de Bordeaux 1, CNRS, UMR 5805 EPOC, Place du Dr Peyneau, 33120 Arcachon (France)

2008-10-20

The relationships between diatom species and cadmium (Cd) accumulated in biofilms of the Riou-Mort River (SW, France) were studied in July 2004 and March 2005. Biofilms were sampled from artificial substrates immersed along a metallic pollution gradient during 20 days. Dynamics of diatom communities and cadmium accumulation were followed by collecting samples after 4, 7, 14 and 20 days of biofilm colonization. Cd accumulation in biofilms during experiment was significantly higher in Cd polluted station (Joanis) than in reference station (Firmi) for both seasons. Periphytic diatom composition varied between sites and seasons. At Firmi station, seasonal dynamics of diatom communities were stable with the dominance of Cyclotella meneghiniana and Melosira varians in July and Surirellabrebissonnii and Navicula gregaria in March. At Joanis station, diatom communities mainly responded to high levels of metal by a high proportion of small, adnate species. Positive correlations between Eolimna minima, Nitzschia palea, Encyonema minutum, Surirella angusta, and Gomphonema parvulum and cadmium accumulation were observed, indicating that these species are tolerant to high levels of cadmium. On the other hand, negative correlations of C. meneghiniana, N. gregaria, Navicula lanceolata, M. varians and Nitzschia dissipata with cadmium qualify them as sensitive diatom species. Periphytic diatom composition through the presence of specific species highlight metal tolerant indicator diatom groups which will be meaningful for biomonitoring pollution in natural aquatic systems.

Colonization of diatom aggregates by the dinoflagellate Noctiluca scintillans

DEFF Research Database (Denmark)

Tiselius, P.; Kiørboe, Thomas

1998-01-01

coagulation of diatom cells and not by mucus feeding behavior of N. scintillans. N. scintillans can be positively buoyant, and estimates of encounter rates between N. scintillans and diatom aggregates during ascent demonstrates that this mechanism is sufficient to account for the observed colonization...

Conditions affecting the release of phosphorus from surface lake sediments.

Science.gov (United States)

Christophoridis, Christophoros; Fytianos, Konstantinos

2006-01-01

Laboratory studies were conducted to determine the effect of pH and redox conditions, as well as the effect of Fe, Mn, Ca, Al, and organic matter, on the release of ortho-phosphates in lake sediments taken from Lakes Koronia and Volvi (Northern Greece). Results were evaluated in combination with experiments to determine P fractionation in the sediment. The study revealed the major effect of redox potential and pH on the release of P from lake sediments. Both lakes showed increased release rates under reductive conditions and high pH values. The fractionation experiments revealed increased mobility of the reductive P fraction as well as of the NaOH-P fraction, indicating participation of both fractions in the overall release of sediment-bound P, depending on the prevailing environmental conditions. The results were assessed in combination with the release patterns of Fe, Mn, Ca, Al, and organic matter, enabling the identification of more specific processes of P release for each lake. The basic release patterns included the redox induced reductive dissolution of P-bearing metal oxides and the competitive exchange of phosphate anions with OH- at high pH values. The formation of an oxidized surface microlayer under oxic conditions acted as a protective film, preventing further P release from the sediments of Lake Volvi, while sediments from Lake Koronia exhibited a continuous and increased tendency to release P under various physicochemical conditions, acting as a constant source of internal P loading.

The ability of microbial community of Lake Baikal bottom sediments associated with gas discharge to carry out the transformation of organic matter under thermobaric conditions

Directory of Open Access Journals (Sweden)

Sergei Viktorovich Bukin

2016-05-01

Full Text Available The ability to compare the composition and metabolic potential of microbial communities inhabiting the subsurface sediment in geographically distinct locations is one of the keys to understanding the evolution and function of the subsurface biosphere. Prospective areas for study of the subsurface biosphere are the sites of hydrocarbon discharges on the bottom of the Lake Baikal rift, where ascending fluxes of gas-saturated fluids and oil from deep layers of bottom sediments seep into near-surface sediment. The samples of surface sediments collected in the area of the Posolskaya Bank methane seep were cultured for 17 months under thermobaric conditions (80°С, 5 MPa with the addition of complementary organic substrate, and a different composition for the gas phase. After incubation, the presence of intact cells of microorganisms, organic matter transformation and the formation of oil biomarkers was confirmed in the samples, with the addition of Baikalian diatom alga Synedra acus detritus, and gas mixture СH4:H2:CO2. Taxonomic assignment of the 16S rRNA sequence data indicates that the predominant sequences in the enrichment were Sphingomonas (55.3%, Solirubrobacter (27.5% and Arthrobacter (16.6%. At the same time, in heat-killed sediment and in sediment without any additional substrates, which were cultivated in a CH4 atmosphere, no geochemical changes were detected, nor the presence of intact cells and 16S rRNA sequences of Bacteria and Archaea. This data may suggest that the decomposition of organic matter under culturing conditions could be performed by microorganisms from low-temperature sediment layers. One possible explanation of this phenomenon is migration of the representatives of the deep thermophilic community through fault zones in the near surface sediment layers, together with gas-bearing fluids.

Sedimentation of particulate material in stratified and nonstratified water columns in the Bombay high area of the Arabian sea

Digital Repository Service at National Institute of Oceanography (India)

Bhosle, N.B.; Sawant, S.S.; Sankaran, P.D.; Wagh, A.B.

Sedimentation of particulate material at 22, 42 and 62 m was recorded at a station in the Bombay High area of the Arabian Sea from September 1985 to March 1986. Diatom numbers and physical structure, especially thermal stratification, played...

Analysis of Heavy Metals in Surface Sediments from Agh Gel Wetland, Iran

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Soheil Sobhanardakani

2016-06-01

Full Text Available Background: Soil and sediment serve as major reservoir for contaminants as they possess ability to bind various chemicals together. In this study the concentrations of heavy metals Cd, Cr and Cu were analyzed in surface sediments of Agh Gel Wetland in west of Iran. Methods: The sediment samples were taken from 10 stations. The samples were subjected to bulk digestion and chemical partitioning and Cd, Cr and Cu concentrations of the sediments were determined by ICP-OES. Geo-accumulation index (I-geo, Contamination factor (CF and Pollution load index (PLI were used to evaluate the magnitude of contaminants in the sediment profile. Results: The mean sediment concentrations (mg kg-1 dry weight ranged within 0.20-0.29 (Cd, 58-71 (Cr and 23-36 (Cu. According to the I-geo values, the sediments' qualities are classified as unpolluted to moderately polluted category. According to the CF values, the sediments' qualities are classified as low to moderate contamination. Furthermore, the PLI values indicated that there were no metal pollution exists for all sampling stations. Conclusion: The Agh Gel Wetland is potential to be threatened by chemical pollutants such as agricultural effluent. So to preserve the environment of the Agh Gel Wetland from deterioration, periodically monitoring of the water and sediment qualities is recommended.

Mathematical simulation of sediment and contaminant transport in surface waters. Annual report, October 1977--September 1978

International Nuclear Information System (INIS)

Onishi, Y.; Arnold, E.M.; Serne, R.J.; Cowan, C.E.; Thompson, F.L.; Mayer, D.W.

1979-01-01

Various pathways exist for exposure of humans and biota to radioactive materials released from nuclear facilities. Hydrologic transport (liquid pathway) is one element in the evaluation of the total radiation dose to man. Mathematical models supported by well-planned field data collection programs can be useful tools in assessing the hydrologic transport and ultimate fate of radionuclides. Radionuclides with high distribution coefficients or radionuclides in surface waters with high suspended sediment concentrations are, to a great extent, adsorbed by river and marine sediments. Thus, otherwise dilute contaminants are concentrated. Contaminated sediments may be deposited on the river and ocean beds creating a significant pathway to man. Contaminated bed sediment in turn may become a long-term source of pollution through desorption and resuspension. In order to assess migration and accumulation of radionuclides in surface waters, mathematical models must correctly simulate essential mechanisms of radionuclide transport. The objectives of this study were: (1) to conduct a critical review of (a) radionuclide transport models as well as sediment transport and representative water quality models in rivers, estuaries, oceans, lakes, and reservoirs, and (b) adsorption and desorption mechanisms of radionuclides with sediments in surface waters; (2) to synthesize a mathematical model capable of predicting short- and long-term transport and accumulation of radionuclides in marine environments

Diatom feeding across trophic guilds in tidal flat nematodes, and the importance of diatom cell size

Science.gov (United States)

Moens, Tom; Vafeiadou, Anna-Maria; De Geyter, Ellen; Vanormelingen, Pieter; Sabbe, Koen; De Troch, Marleen

2014-09-01

We examine the capacity of nematodes from three feeding types (deposit feeder, epistrate feeder, predator) to utilize microphytobenthos (MPB), and assess whether diatom cell size and consumer body size are important drivers of their feeding. We analyzed natural stable isotope ratios of carbon and nitrogen in abundant nematode genera and a variety of carbon sources at an estuarine intertidal flat. All nematodes had δ13C indicating that MPB is their major carbon source. δ15N, however, demonstrated that only one deposit and one epistrate feeder genus obtained most of their carbon from direct grazing on MPB, whereas other deposit feeders and predators obtained at least part of their carbon by predation on MPB grazers. We then performed a microcosm experiment in which equal cell numbers of each of three differently sized strains of the pennate diatom Seminavis were offered as food to four, one and one genera of deposit feeders, epistrate feeders and predators, respectively. Previous studies have shown that all but the epistrate feeder ingest whole diatoms, whereas the epistrate feeder pierces cells and sucks out their contents. Most genera showed markedly higher carbon absorption from medium and large cells than from small ones. When considering the number of cells consumed, however, none of the nematodes which ingest whole cells exhibited a clear preference for any specific diatom size. The epistrate feeder was the smallest nematode taxon considered here, yet it showed a marked preference for large cells. These results highlight that the feeding mechanism is much more important than consumer size as a driver of particle size selection in nematodes grazing MPB.

Dust fluxes linked to intensification of Prevailing Westerlies and Trade Winds stimulated Ethmodiscus rex giant diatom blooms in the southern Mariana Trench, western tropical Pacific at onset of the Last Glacial Maximum

Science.gov (United States)

Chen, D.; Luo, M.; Algeo, T. J.; Chen, L.

2017-12-01

The strontium (Sr) and neodymium (Nd) isotope compositions and clay-mineral assemblages of the detrital fraction of sediments in the southern Mariana Trench together with major- and trace-elements concentrations of bulk sediments have been determined to trace the sediment provenance and investigate the relationship between Asian dust input and blooms of the giant diatom Ethmodiscus rex. Enrichment of barium (Ba) in relative to upper continental crust (UCC) and low average Rb/K ratios in all study cores point to both hydrothermal and volcaniclastic inputs to the sediments. Both the Sr-Nd isotope compositions and the clay-mineral assemblages of the detrital fraction reflect a two-component mixing system consisting of Mariana arc volcaniclastics and eolian Asian dust. A decrease in smectite content and an increase in illite content just before formation of laminated diatom mats (LDMs) suggest a change in the source of the eolian dust from eastern Asian deserts (EADs) to central Asian deserts (CADs) at the onset of the Last Glacial Maximum (LGM). This observation suggests a causal linkage between atmospheric circulation patterns, the sources of eolian Asian dust, and marine productivity in the western Pacific region. We postulate that the shift to CAD-sourced dust may have played a greater role in promoting biological productivity in the oligotrophic western Pacific Ocean during the LGM than previously realized.

Vertical migration of fine-grained sediments from interior to surface of seabed driven by seepage flows-`sub-bottom sediment pump action'

Science.gov (United States)

Zhang, Shaotong; Jia, Yonggang; Wen, Mingzheng; Wang, Zhenhao; Zhang, Yaqi; Zhu, Chaoqi; Li, Bowen; Liu, Xiaolei

2017-02-01

A scientific hypothesis is proposed and preliminarily verified in this paper: under the driving of seepage flows, there might be a vertical migration of fine-grained soil particles from interior to surface of seabed, which is defined as `sub-bottom sediment pump action' in this paper. Field experiments were performed twice on the intertidal flat of the Yellow River delta to study this process via both trapping the pumped materials and recording the pore pressures in the substrate. Experimental results are quite interesting as we did observe yellow slurry which is mainly composed of fine-grained soil particles appearing on the seabed surface; seepage gradients were also detected in the intertidal flat, under the action of tides and small wind waves. Preliminary conclusions are that `sediment pump' occurs when seepage force exceeds a certain threshold: firstly, it is big enough to disconnect the soil particles from the soil skeleton; secondly, the degree of seabed fluidization or bioturbation is big enough to provide preferred paths for the detached materials to migrate upwards. Then they would be firstly pumped from interior to the surface of seabed and then easily re-suspended into overlying water column. Influential factors of `sediment pump' are determined as hydrodynamics (wave energy), degree of consolidation, index of bioturbation (permeability) and content of fine-grained materials (sedimentary age). This new perspective of `sediment pump' may provide some implications for the mechanism interpretation of several unclear geological phenomena in the Yellow River delta area.

The health of benthic diatom assemblages in lower stretch

Indian Academy of Sciences (India)

This study examines the ecological state of epilithic diatom assemblages along the lower stretch of Mandakini, a glacier-fed Himalayan river. The diatoms were sampled at four stations during winter and summer, only once in each season. Valve counts were obtained from Naphrax mounts prepared from each sample.

A diatom-based biological condition gradient (BCG) approach for assessing impairment and developing nutrient criteria for streams.

Science.gov (United States)

Hausmann, Sonja; Charles, Donald F; Gerritsen, Jeroen; Belton, Thomas J

2016-08-15

Over-enrichment leading to excess algal growth is a major problem in rivers and streams. Regulations to protect streams typically incorporate nutrient criteria, concentrations of phosphorus and nitrogen that should not be exceeded in order to protect biological communities. A major challenge has been to develop an approach for both categorizing streams based on their biological conditions and determining scientifically defensible nutrient criteria to protect the biotic integrity of streams in those categories. To address this challenge, we applied the Biological Condition Gradient (BCG) approach to stream diatom assemblages to develop a system for categorizing sites by level of impairment, and then examined the related nutrient concentrations to identify potential nutrient criteria. The six levels of the BCG represent a range of ecological conditions from natural (1) to highly disturbed (6). A group of diatom experts developed a set of rules and a model to assign sites to these levels based on their diatom assemblages. To identify potential numeric nutrient criteria, we explored the relation of assigned BCG levels to nutrient concentrations, other anthropogenic stressors, and possible confounding variables using data for stream sites in New Jersey (n=42) and in surrounding Mid-Atlantic states, USA (n=1443). In both data sets, BCG levels correlated most strongly with total phosphorus and the percentage of forest in the watershed, but were independent of pH. We applied Threshold Indicator Taxa Analysis (TITAN) to determine change-points in the diatom assemblages along the BCG gradient. In both data sets, statistically significant diatom changes occurred between BCG levels 3 and 4. Sites with BCG levels 1 to 3 were dominated by species that grow attached to surfaces, while sites with BCG scores of 4 and above were characterized by motile diatoms. The diatom change-point corresponded with a total phosphorus concentration of about 50μg/L. Copyright © 2016 Elsevier B

CoBOP: Microbial Biofilms: A Parameter Altering the Apparent Optical Properties of Sediments, Seagrasses and Surfaces

Science.gov (United States)

2002-09-30

CoBOP: Microbial Biofilms: A Parameter Altering the Apparent Optical Properties of Sediments, Seagrasses and Surfaces Alan W. Decho Department...TITLE AND SUBTITLE CoBOP: Microbial Biofilms: A Parameter Altering the Apparent Optical Properties of Sediments, Seagrasses and Surfaces 5a. CONTRACT...structures produced by bacteria. Their growth appears to depend on biofilm processes and light distributions ( photosynthesis ). Therefore, the data acquired

Investigation of the hydrodynamic behavior of diatom aggregates using particle image velocimetry.

Science.gov (United States)

Xiao, Feng; Li, Xiaoyan; Lam, Kitming; Wang, Dongsheng

2012-01-01

The hydrodynamic behavior of diatom aggregates has a significant influence on the interactions and flocculation kinetics of algae. However, characterization of the hydrodynamics of diatoms and diatom aggregates in water is rather difficult. In this laboratory study, an advanced visualization technique in particle image velocimetry (PIV) was employed to investigate the hydrodynamic properties of settling diatom aggregates. The experiments were conducted in a settling column filled with a suspension of fluorescent polymeric beads as seed tracers. A laser light sheet was generated by the PIV setup to illuminate a thin vertical planar region in the settling column, while the motions of particles were recorded by a high speed charge-coupled device (CCD) camera. This technique was able to capture the trajectories of the tracers when a diatom aggregate settled through the tracer suspension. The PIV results indicated directly the curvilinear feature of the streamlines around diatom aggregates. The rectilinear collision model largely overestimated the collision areas of the settling particles. Algae aggregates appeared to be highly porous and fractal, which allowed streamlines to penetrate into the aggregate interior. The diatom aggregates have a fluid collection efficiency of 10%-40%. The permeable feature of aggregates can significantly enhance the collisions and flocculation between the aggregates and other small particles including algal cells in water.

Surface sediment remobilization triggered by earthquakes in the Nankai forearc region

Science.gov (United States)

Okutsu, N.; Ashi, J.; Yamaguchi, A.; Irino, T.; Ikehara, K.; Kanamatsu, T.; Suganuma, Y.; Murayama, M.

2017-12-01

Submarine landslides triggered by earthquakes generate turbidity currents (e.g. Piper et al., 1988; 1999). Recently several studies report that the remobilization of the surface sediment triggered by earthquakes can also generate turbidity currents. However, studies that proposed such process are still limited (e.g. Ikehara et al., 2016; Mchugh et al., 2016; Moernaut et al., 2017). The purpose of this study is to examine those sedimentary processes in the Nankai forearc region, SW Japan using sedimentary records. We collected 46 cm-long multiple core (MC01) and a 6.7 m-long piston core (PC03) from the small basin during the R/V Shinsei Maru KS-14-8 cruise. The small confined basin, which is our study site, block the paths of direct sediment supply from river-submarine canyon system. The sampling site is located at the ENE-WSW elongated basin between the accretionary prism and the forearc basin off Kumano without direct sediment supply from river-submarine canyon system. The basin exhibits a confined basin that captures almost of sediments supplied from outside. Core samples are mainly composed of silty clay or very fine sand. Cs-137 measurement conducted on a MC01 core shows constantly high value at the upper 17 cm section and no detection below it. Moreover, the sedimentary structure is similar to fine-grained turbidite described by Stow and Shanmgam (1980), we interpret the upper 17 cm of MC01 as muddy turbidite. Grain size distribution and magnetic susceptibility also agree to this interpretation. Rapid sediment deposition after 1950 is assumed and the most likely event is the 2004 off Kii peninsula earthquakes (Mw=6.6-7.4). By calculation from extent of provenance area, which are estimated by paleocurrent analysis and bathymetric map, and thickness of turbidite layer we conclude that surface 1 cm of slope sediments may be remobilized by the 2004 earthquakes. Muddy turbidites are also identified in a PC03 core. The radiocarbon age gap of 170 years obtained

A long-term multi-proxy record of varved sediments highlights climate-induced mixing-regime shift in a large hard-water lake ~5000 years ago

Directory of Open Access Journals (Sweden)

Walter Finsinger

2014-06-01

Full Text Available The long-term terrestrial and aquatic ecosystem dynamics spanning between approximately 6200 and 4800 cal BP were investigated using pollen, diatoms, pigments, charcoal, and geochemistry from varved sediments collected in a large stratified perialpine lake, Lago Grande di Avigliana, in the Italian Alps. Marked changes were detected in diatom and pigment assemblages and in sediment composition at ~4900 cal BP. Organic matter rapidly increased and diatom assemblages shifted from oligotrophic to oligo-mesotrophic planktonic assemblages suggesting that nutrients increased at that time. Because land cover, erosion, and fire frequency did not change significantly, external nutrient sources were possibly not essential in controlling the lake-ecosystem dynamics. This is also supported by redundancy analysis, which showed that variables explaining significant amounts of variance in the diatom data were not the ones related to changes in the catchment. Instead, the broad coincidence between the phytoplankton dynamics and rising lake-levels, cooler temperatures, and stronger spring winds in the northern Mediterranean borderlands possibly points to the effects of climate change on the nutrient recycling in the lake by means of the control that climate can exert on mixing depth. We hypothesize that the increased P-release rates and higher organic-matter accumulation rates, proceeded by enhanced precipitation of iron sulphides, were possibly caused by deeper and stronger mixing leading to enhanced input of nutrients from the anoxic hypolimnion into the epilimnion. Although we cannot completely rule out the influence of minor land-cover changes due to human activities, it may be hypothesized that climate-induced cumulative effects related to mixing regime and P-recycling from sediments influenced the aquatic-ecosystem dynamics.

A simple digestion method with a Lefort aqua regia solution for diatom extraction.

Science.gov (United States)

Wang, Huipin; Liu, Yan; Zhao, Jian; Hu, Sunlin; Wang, Yuzhong; Liu, Chao; Zhang, Yanji

2015-01-01

Presence of diatoms in tissues has been considered as a significant sign of drowning. However, there are limitations in the present extraction methods. We developed a new digestion method using the Lefort aqua regia solution (3:1 nitric acid to hydrochloric acid) for diatom extraction and evaluated the digestive capability, diatom destruction, and diatoms' recovery of this new method. The kidney tissues from rabbit mixed with water rich in diatoms were treated by the Lefort aqua regia digestion method (n = 10) and the conventional acid digestion method (n = 10). The results showed that the digestive capability of Lefort aqua regia digestion method was superior to conventional acid digestion method (p 0.05). The Lefort aqua regia reagent is an improvement over the conventional acid digestion for recovery of diatoms from tissue samples. © 2014 American Academy of Forensic Sciences.

[Changes in phytoperiphyton community during seasonal succession: influence of plankton sedimentation and grazing by phytophages--Chironomid larvae].

Science.gov (United States)

Lukin, V B

2002-01-01

The investigation of seasonal changes in spatial structure of phytoperiphyton during succession was conducted at the lower reaches of Akulovsky water channel from April to August 2000. At the beginning of succession from April to June dominant forms were chain-forming diatoms and filamentous green algae, sedimented from plankton. Later, at the middle of June under increasing pressure of herbivorous, they were replaced by stretched unicellular diatoms and colonial cyanobacteria. In late June-August, when herbivorous predation was the most intensive, the relative abundance of typical periphytonic forms decreased while that of settled planktonic forms increased. The effect of planktonic algae sedimentation on periphyton composition was evaluated as similarity between phytoperiphyton and phytoplankton communities measured with Chekanovski--Sorensen index. The value of this index tends to decrease with the development of periphyton while showing some relation to intensity of herbivorous pressure. Minimal values of Chekanovski--Sorensen index were under moderate herbivorous density, whereas maximal values were observed in periods of extremely high or low herbivorous density.

Environmental assessment of coastal surface sediments at Tarut Island, Arabian Gulf (Saudi Arabia)

International Nuclear Information System (INIS)

Youssef, Mohamed; El-Sorogy, Abdelbaset; Al Kahtany, Khaled; Al Otiaby, Naif

2015-01-01

Highlights: • The present work deal with the environmental assessment of Tarut Island Coastal area. • Thirty eight surface sediments samples have been chemically analyzed. • Thirteen major and trace metals have been recorded. • The area of study is highly polluted with Arsenic and Mercury. - Abstract: Thirty eight surface sediments samples have been collected in the area around Tarut Island, Saudi Arabian Gulf to determine the spatial distribution of metals, and to assess the magnitude of pollution. Total concentrations of Fe, Mn, As, B, Cd, Co, Cr, Cu, Hg, Mo, Pb, Se, and Zn in the sediments were measured using ICP-MS (Inductively Coupled Plasma-Mass Spectrometer). Nature of sediments and heavy metals distribution reflect marked changes in lithology, biological activities in Tarut bay. Very high arsenic concentrations were reported in all studied locations from Tarut Island. The concentrations of Mercury are generally high comparing to the reported values from the Gulf of Oman, Red Sea. The concentrations of As and Hg exceeded the wet threshold safety values (MEC, PEC) indicating possible As and Hg contamination. Dredging and land filling, sewage, and oil pollution are the most important sources of pollution in the study area

Pesticides distribution in surface waters and sediments of lotic and ...

African Journals Online (AJOL)

An investigation on the availability and distribution of Lindane (HCHs) and Total organochlorine phosphate (TOCP) in the surface waters and sediments of selected water bodies in Agbede wetlands was carried out from December, 2012 to May, 2014 in order to cover seasonal trends in both matrixes. A Gas Chromatograph ...

PBDD/Fs in surface sediments from the East River, China.

Science.gov (United States)

Ren, M; Peng, P A; Chen, D Y; Chen, P; Zhou, L

2009-09-01

The contamination status of polybrominated dibenzo-p-dioxins and dibenzofurans (PBDD/Fs) was preliminarily investigated in surface sediments from the East River. The concentrations of eight 2,3,7,8-substituted tetra- to hexa- PBDD/Fs were found to be in the range of 0.32-110 (mean 13) pg g(-1) and the corresponding TEQ concentrations were 0.087-18 (mean 2) pg I-TEQ g(-1). All sediments were characterized by the dominant PBDFs. 2,3,4,7,8-PeBDF was the most important TEQ contributor, accounting for 47%-77% of the total I-TEQ of PBDD/Fs. PCDD/Fs contributed dominantly to the total TEQs of PCDD/Fs, PBDD/Fs and dioxin-like PCBs in most samples except of the sediment from the Shima River. The higher PBDD/F concentrations in the Shima River may be attributed to the use of BFRs in the electrical and electronics industries, which posed a potential risk of dioxins on ecological system.

The role of diatom nanostructures in biasing diffusion to improve uptake in a patchy nutrient environment.

Directory of Open Access Journals (Sweden)

James G Mitchell

Full Text Available BACKGROUND: Diatoms are important single-celled autotrophs that dominate most lit aquatic environments and are distinguished by surficial frustules with intricate designs of unknown function. PRINCIPAL FINDINGS: We show that some frustule designs constrain diffusion to positively alter nutrient uptake. In nutrient gradients of 4 to 160 times over <5 cm, the screened-chambered morphology of Coscincodiscus sp. biases the nutrient diffusion towards the cell by at least 3.8 times the diffusion to the seawater. In contrast, the open-chambers of Thalassiosira eccentrica produce at least a 1.3 times diffusion advantage to the membrane over Coscincodiscus sp. when nutrients are homogeneous. SIGNIFICANCE: Diffusion constraint explains the success of particular diatom species at given times and the overall success of diatoms. The results help answer the unresolved question of how adjacent microplankton compete. Furthermore, diffusion constraint by supramembrane nanostructures to alter molecular diffusion suggests that microbes compete via supramembrane topology, a competitive mechanism not considered by the standard smooth-surface equations used for nutrient uptake nor in microbial ecology and cell physiology.

Diatoms in acid mine drainage and their role in the formation of iron-rich stromatolites

Energy Technology Data Exchange (ETDEWEB)

Brake, S.S.; Hasiotis, S.T.; Dannelly, H.K. [Indiana State University, Terre Haute, IN (United States)

2004-08-01

Adverse conditions in the acid mine drainage (AMD) system at the Green Valley mine, Indiana, limit diatom diversity to one species, Nitzschia tubicola. It is present in three distinct microbial consortia: Euglena mutabilis-dominated biofilm, diatom-dominated biofilm, and diatom-exclusive biofilm. E. mutabilis dominates the most extensive biofilm, with lesser numbers of N. tubicola, other eukaryotes, and bacteria. Diatom-dominated biofilm occurs as isolated patches containing N. tubicola with minor fungal hyphae, filamentous algae, E. mutabilis, and bacteria. Diatom-exclusive biofilm is rare, composed entirely of N. tubicola. Diatom distribution is influenced by seasonal and intraseasonal changes in water temperature and chemistry. Diatoms are absent in winter due to cool water temperatures. In summer, isolated patchy communities are present due to warmer water temperatures. In 2001, the diatom community expanded its distribution following a major rainfall that temporarily diluted the effluent, creating hospitable conditions for diatom growth. After several weeks when effluent returned to preexisting conditions, the diatom biofilm retreated to isolated patches, and E. mutabilis biofilm flourished. Iron-rich stromatolites underlie the biofilms and consist of distinct laminae, recording spatial and temporal oscillations in physicochemical conditions and microbial activity. The stromatolites are composed of thin, wavy laminae with partially decayed E. mutabilis biofilm, representing microbial activity and iron precipitation under normal AMD conditions. Alternating with the wavy layers are thicker, porous, spongelike laminae composed of iron precipitated on and incorporated into radiating colonies of diatoms. These layers indicate episodic changes in water chemistry, allowing diatoms to temporarily dominate the system.

Patterns and drivers of bacterial α- and β-diversity across vertical profiles from surface to subsurface sediments.

Science.gov (United States)

Luna, Gian Marco; Corinaldesi, Cinzia; Rastelli, Eugenio; Danovaro, Roberto

2013-10-01

We investigated the patterns and drivers of bacterial α- and β-diversity, along with viral and prokaryotic abundance and the carbon production rates, in marine surface and subsurface sediments (down to 1 m depth) in two habitats: vegetated sediments (seagrass meadow) and non-vegetated sediments. Prokaryotic abundance and production decreased with depth in the sediment, but cell-specific production rates and the virus-to-prokaryote ratio increased, highlighting unexpectedly high activity in the subsurface. The highest diversity was observed in vegetated sediments. Bacterial β-diversity between sediment horizons was high, and only a minor number of taxa was shared between surface and subsurface layers. Viruses significantly contributed to explain α- and β-diversity patterns. Despite potential limitations due to the only use of fingerprinting techniques, this study indicates that the coastal subsurface host highly active and diversified bacterial assemblages, that subsurface cells are more active than expected and that viruses promote β-diversity and stimulate bacterial metabolism in subsurface layers. The limited number of taxa shared between habitats, and between surface and subsurface sediment horizons, suggests that future investigations of the shallow subsurface will provide insights into the census of bacterial diversity, and the comprehension of the patterns and drivers of prokaryotic diversity in marine ecosystems. © 2013 John Wiley & Sons Ltd and Society for Applied Microbiology.

Sedimentology and geochemistry of surface sediments, outer continental shelf, southern Bering Sea

Science.gov (United States)

Gardner, J.V.; Dean, W.E.; Vallier, T.L.

1980-01-01

Islands and the outer continental shelf and slope, indicates that Holocene sediment dynamics cannot be used to explain the observed distribution of surface sediment derived from the Aleutian Islands. We suggest that this pattern is relict and resulted from sediment dynamics during lower sea levels of the Pleistocene. ?? 1980.

Diatomic infrared gas-dynamic laser

International Nuclear Information System (INIS)

Mckenzie, R.L.

1971-01-01

A laser is provided which utilizes the infrared vibration rotation transitions of a diatomic gas such as carbon monoxide. The laser action is produced by an active diatomic gas such as carbon monoxide mixed with a vibrationally resonant pumping gas such as nitrogen. In addition, a noble gas such as argon may be employed as a third gas in the mixture. The gas mixture contains from 1 to 80 vol percent of the active gas based on the pumping gas, and the third gas, if used, can constitute up to 90 percent of the total gas volume. A number of significantly different wavelengths can be produced by the laser. A single laser may contain several optical resonators at different locations, so that the desired wave length can be selected at will

Transformation techniques for metabolic engineering of diatoms and haptophytes: current state and prospects.

Science.gov (United States)

Velmurugan, Natarajan; Deka, Deepi

2018-05-01

Diatoms and haptophytes represent a key segment of the dominant phytoplankton communities that frequently form massive blooms in the photic zone of the ocean and are considered indicators of global climate changes. Diatoms and haptophytes also play a vital role in the biological carbon fixation in the carbon cycles. Carbon partitioning within diatoms and haptophytes possesses a wide range of chemical compounds and storage materials, such as lipids, carbohydrates, and chlorophyll. Among the marine microorganisms, diatoms and haptophytes have been recognized as promising sources of long- and very long-chain polyunsaturated fatty acids (PUFA). So far, a variety of approaches have been employed for genetic modification in the nuclei of diatoms and haptophytes. Studies on transformation and metabolic engineering in various intracellular genomes, such as chloroplast and mitochondria, are scarce. Particle bombardment, Agrobacterium and PEG-mediated gene transfer, and electroporation have been reported for foreign gene transformation into the diatoms and haptophytes. Antibiotics (G418 and chloramphenicol) and herbicides (zeocin, hygromycin, and norflurazon) have been successfully demonstrated as the best selection markers. Despite the availability of a wide range of molecular tools for foreign gene expression in microalgae, very few promoters (lhcf1, nr, h4, ef2, fcp, and pds) have been reported for diatoms and haptophytes. Therefore, in this review, we first summarize the significant progress that has been achieved in transgene expression in diatoms and haptophytes and highlight the importance and availability of recently developed novel tools that are suitable for transgenic expression in diatoms and haptophytes.

Diatom Transcriptional and Physiological Responses to Changes in Iron Bioavailability across Ocean Provinces

Directory of Open Access Journals (Sweden)

Natalie R. Cohen

2017-11-01

Full Text Available Changes in iron (Fe bioavailability influence diatom physiology and community composition, and thus have a profound impact on primary productivity and ecosystem dynamics. Iron limitation of diatom growth rates has been demonstrated in both oceanic and coastal waters of the Northeast Pacific Ocean and is predicted to become more pervasive in future oceans. However, it is unclear how the strategies utilized by phytoplankton to cope with low Fe bioavailability and resupply differ across these ocean provinces. We investigated the response of diatom communities to variable Fe conditions through incubation experiments performed in the Fe mosaic of the California Upwelling Zone and along a natural Fe gradient in the Northeast Pacific Ocean. Through coupling gene expression of two dominant diatom taxa (Pseudo-nitzschia and Thalassiosira with biological rate process measurements, we provide an in-depth examination of the physiological and molecular responses associated with varying Fe status. Following Fe enrichment, oceanic diatoms showed distinct differential expression of gene products involved in nitrogen assimilation, photosynthetic carbon fixation, and vitamin production compared to diatoms from low-Fe coastal sites, possibly driven by the chronic nature of Fe stress at the oceanic site. Genes of interest involved in Fe and N metabolism additionally exhibited divergent expression patterns between the two diatom taxa investigated, demonstrating that diverse diatoms may invoke alternative strategies when dealing with identical changes in their environment. We report here several mechanisms used distinctly by coastal or oceanic diatom communities as well as numerous taxa-specific strategies for coping with Fe stress and rearranging nutrient metabolism following Fe enrichment.

GPS based surface displacements – a proxy for discharge and sediment transport from the Greenland Ice Sheet

DEFF Research Database (Denmark)

Hasholt, Bent; Khan, Shfaqat Abbas; Mikkelsen, Andreas Bech

2014-01-01

winter precipitation correlated fairly well with surface depression (R2=0.69). The relationships are based on seven years of runoff and sediment transport observations from the Watson River (2007–2013), winter precipitation from Kangerlussuaq Airport and GPS observations at Kellyville. GPS recordings...... of surface subsidence and uplift from 1996–2013 are used to calculate 18 years time series of annual runoff, sediment and solute transport and 10 winter precipitation. Runoff and related transport of sediment and solutes increase over the period, while winter precipitation (land depression) tends to decrease......The elastic respond of the Earth’s surface to mass changes has been measured with Global Positioning System (GPS). Mass loss as accumulated runoff and sediment transport from a 10000 km2 segment of the Greenland Ice Sheet (GrIS) correlated very well (R2=0.83) with GPS measured uplift. Accumulated...

Fossil diatoms imply common cometary origin of space-dust and the Polonnaruwa meteorite

Science.gov (United States)

Miyake, N.; Wallis, M. K.; Wickramasinghe, N. C.

2013-09-01

IDPs collected in 2001 at 40km altitude by cryosamplers studied via scanning electron microscopy and EDX were found to contain siliceous fibres and whiskers, some isolated but often embedded in a mineral matrix. The newly-arrived Polonnaruwa meteorite gives strong evidence for the hypothesis that they are fragments of diatoms agglomerating on solar system icy bodies. Diatom frustules and even whole diatom skeletons are identifiable within the meteorite. Specimens of a siliceous exoskeleton with multiple spines/whiskers have also been found, thought to be freshwater diatoms. As diatoms are dependent on a source of nitrogenous organics, the siliceous whiskers within IDPs would be an indicator of a photosynthesizing ecosystem, probably on a comet.

Reconstruction of Holocene environmental changes in Southern Kurils (North-Western Pacific) based on palaeolake sediment proxies from Shikotan Island

Science.gov (United States)

Nazarova, Larisa; Grebennikova, Tatiana A.; Razjigaeva, Nadezhda G.; Ganzey, Larisa A.; Belyanina, Nina I.; Arslanov, Khikmat A.; Kaistrenko, Victor M.; Gorbunov, Aleksey O.; Kharlamov, Andrey A.; Rudaya, Natalia; Palagushkina, Olga; Biskaborn, Boris K.; Diekmann, Bernhard

2017-12-01

We investigated a well-dated sediment section of a palaeolake situated in the coastal zone of Shikotan Island (Lesser Kurils) for organic sediment-geochemistry and biotic components (diatoms, chironomids, pollen) in order to provide a reconstruction of the palaeoenvironmental changes and palaeo-events (tsunamis, sea-level fluctuations and landslides) in Holocene. During the ca 8000 years of sedimentation the changes in organic sediment-geochemistry and in composition of the diatoms and chironomids as well as the shifts in composition of terrestrial vegetation suggest that the period until ca 5800 cal yr BP was characterized by a warm and humid climate (corresponds to middle Holocene optimum) with climate cooling thereafter. A warm period reconstructed from ca 900 to at least ca 580 cal yr BP corresponds to a transition to a Nara-Heian-Kamakura warm stage and can be correlated to a Medieval Warm Period. After 580 cal yr PB, the lake gradually dried out and climatic signals could not be obtained from the declining lacustrine biological communities, but the increasing role of spruce and disappearance of the oak from the vegetation give evidences of the climate cooling that can be correlated with the LIA. The marine regression stages at the investigated site are identified for ca 6200-5900 (at the end of the middle Holocene transgression), ca 5500-5100 (Middle Jomon regression or Kemigawa regression), and ca 1070-360 cal yr BP (at the end of Heian transgression). The lithological structure of sediments and the diatom compositions give evidences for the multiple tsunami events of different strengths in the Island. Most remarkable of them can be dated at around ca 7000, 6460, 5750, 4800, 950 cal yr BP. The new results help to understand the Holocene environmental history of the Southern Kurils as a part of the Kuril-Kamchatka and Aleutian Marginal Sea-Island Arc Systems in the North-Western Pacific region.

Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus

KAUST Repository

Mock, Thomas

2017-01-17

The Southern Ocean houses a diverse and productive community of organisms. Unicellular eukaryotic diatoms are the main primary producers in this environment, where photosynthesis is limited by low concentrations of dissolved iron and large seasonal fluctuations in light, temperature and the extent of sea ice. How diatoms have adapted to this extreme environment is largely unknown. Here we present insights into the genome evolution of a cold-adapted diatom from the Southern Ocean, Fragilariopsis cylindrus, based on a comparison with temperate diatoms. We find that approximately 24.7 per cent of the diploid F. cylindrus genome consists of genetic loci with alleles that are highly divergent (15.1 megabases of the total genome size of 61.1 megabases). These divergent alleles were differentially expressed across environmental conditions, including darkness, low iron, freezing, elevated temperature and increased CO2. Alleles with the largest ratio of non-synonymous to synonymous nucleotide substitutions also show the most pronounced condition-dependent expression, suggesting a correlation between diversifying selection and allelic differentiation. Divergent alleles may be involved in adaptation to environmental fluctuations in the Southern Ocean.

Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus

KAUST Repository

Mock, Thomas; Otillar, Robert P.; Strauss, Jan; McMullan, Mark; Paajanen, Pirita; Schmutz, Jeremy; Salamov, Asaf; Sanges, Remo; Toseland, Andrew; Ward, Ben J.; Allen, Andrew E.; Dupont, Christopher L.; Frickenhaus, Stephan; Maumus, Florian; Veluchamy, Alaguraj; Wu, Taoyang; Barry, Kerrie W.; Falciatore, Angela; Ferrante, Maria I.; Fortunato, Antonio E.; Glö ckner, Gernot; Gruber, Ansgar; Hipkin, Rachel; Janech, Michael G.; Kroth, Peter G.; Leese, Florian; Lindquist, Erika A.; Lyon, Barbara R.; Martin, Joel; Mayer, Christoph; Parker, Micaela; Quesneville, Hadi; Raymond, James A.; Uhlig, Christiane; Valas, Ruben E.; Valentin, Klaus U.; Worden, Alexandra Z.; Armbrust, E. Virginia; Clark, Matthew D.; Bowler, Chris; Green, Beverley R.; Moulton, Vincent; Oosterhout, Cock van; Grigoriev, Igor V.

2017-01-01

The Southern Ocean houses a diverse and productive community of organisms. Unicellular eukaryotic diatoms are the main primary producers in this environment, where photosynthesis is limited by low concentrations of dissolved iron and large seasonal fluctuations in light, temperature and the extent of sea ice. How diatoms have adapted to this extreme environment is largely unknown. Here we present insights into the genome evolution of a cold-adapted diatom from the Southern Ocean, Fragilariopsis cylindrus, based on a comparison with temperate diatoms. We find that approximately 24.7 per cent of the diploid F. cylindrus genome consists of genetic loci with alleles that are highly divergent (15.1 megabases of the total genome size of 61.1 megabases). These divergent alleles were differentially expressed across environmental conditions, including darkness, low iron, freezing, elevated temperature and increased CO2. Alleles with the largest ratio of non-synonymous to synonymous nucleotide substitutions also show the most pronounced condition-dependent expression, suggesting a correlation between diversifying selection and allelic differentiation. Divergent alleles may be involved in adaptation to environmental fluctuations in the Southern Ocean.

E. coli Surface Properties Differ between Stream Water and Sediment Environments

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Xiao Liang

2016-11-01

Full Text Available The importance of E. coli as an indicator organism in fresh water has led to numerous studies focusing on cell properties and transport behavior. However, previous studies have been unable to assess if differences in E. coli cell surface properties and genomic variation are associated with different environmental habitats. In this study, we investigated the variation in characteristics of E. coli obtained from stream water and stream bottom sediments. Cell properties were measured for 77 genomically different E. coli strains (44 strains isolated from sediments and 33 strains isolated from water under common stream conditions in the Upper Midwestern United States: pH 8.0, ionic strength 10mM and 22˚C. Measured cell properties include hydrophobicity, zeta potential, net charge, total acidity and extracellular polymeric substance (EPS composition. Our results indicate that stream sediment E. coli had significantly greater hydrophobicity, greater EPS protein content and EPS sugar content, less negative net charge, and higher point of zero charge than stream water E. coli. A significant positive correlation was observed between hydrophobicity and EPS protein for stream sediment E. coli but not for stream water E. coli. Additionally, E. coli surviving in the same habitat tended to have significantly larger (GTG5 genome similarity. After accounting for the intrinsic impact from the genome, environmental habitat was determined to be a factor influencing some cell surface properties, such as hydrophobicity. The diversity of cell properties and its resulting impact on particle interactions should be considered for environmental fate and transport modeling of aquatic indicator organisms such as E. coli.

E. coli Surface Properties Differ between Stream Water and Sediment Environments.

Science.gov (United States)

Liang, Xiao; Liao, Chunyu; Thompson, Michael L; Soupir, Michelle L; Jarboe, Laura R; Dixon, Philip M

2016-01-01

The importance of E. coli as an indicator organism in fresh water has led to numerous studies focusing on cell properties and transport behavior. However, previous studies have been unable to assess if differences in E. coli cell surface properties and genomic variation are associated with different environmental habitats. In this study, we investigated the variation in characteristics of E. coli obtained from stream water and stream bottom sediments. Cell properties were measured for 77 genomically different E. coli strains (44 strains isolated from sediments and 33 strains isolated from water) under common stream conditions in the Upper Midwestern United States: pH 8.0, ionic strength 10 mM and 22°C. Measured cell properties include hydrophobicity, zeta potential, net charge, total acidity, and extracellular polymeric substance (EPS) composition. Our results indicate that stream sediment E. coli had significantly greater hydrophobicity, greater EPS protein content and EPS sugar content, less negative net charge, and higher point of zero charge than stream water E. coli . A significant positive correlation was observed between hydrophobicity and EPS protein for stream sediment E. coli but not for stream water E. coli . Additionally, E. coli surviving in the same habitat tended to have significantly larger (GTG) 5 genome similarity. After accounting for the intrinsic impact from the genome, environmental habitat was determined to be a factor influencing some cell surface properties, such as hydrophobicity. The diversity of cell properties and its resulting impact on particle interactions should be considered for environmental fate and transport modeling of aquatic indicator organisms such as E. coli .

Epiphytic Diatoms along Environmental Gradients in Western European Shallow Lakes

NARCIS (Netherlands)

Blanco, Saul; Cejudo-Figueiras, Cristina; Alvarez-Blanco, Irene; van Donk, Ellen|info:eu-repo/dai/nl/069838593; Gross, Elisabeth M.; Hansson, Lars-Anders; Irvine, Kenneth; Jeppesen, Erik; Kairesalo, Timo; Moss, Brian; Noges, Tiina; Becares, Eloy

Diatom-based assays have been successfully associated worldwide with the tropic status of lakes. Several studies have demonstrated a correlation between epiphytic diatoms and nutrient load in shallow lakes and wetlands. We examine the relative importance of environmental factors in explaining the

Suggestions for diatom-based monitoring in intermittent streams

Directory of Open Access Journals (Sweden)

Falasco Elisa

2016-01-01

Full Text Available Over the last decades, river lentification processes and droughts have been dramatically spreading worldwide, due to global and local drastic changes due to human activities. Under this scenario, the evaluation of physical disturbance caused by intermittency and droughts has become more and more relevant. In this research, we compare samples collected in Mediterranean streams following both traditional and experimental approaches with the aim of understanding if diatom indices calculated from a new sampling strategy could provide additional information for the physical disturbance assessment. Moreover, we also evaluated the response of functional metrics. Our results demonstrated that even though an enhanced sampling method better reflects hydrological disturbance than the traditional one, diatom indices do not detect it. Conversely, functional traits proved to be important metrics for the hydrological disturbance assessment. In particular, benthic diatom chlorophyll a showed significantly lower values in sections more subject to droughts. With respect to ecological guilds, the motile taxa proved to be linked to depositional areas, which resulted important microhabitats (MHs to be explored in rivers affected by lentification. Including different MHs in the sampling process improves the information we can obtain from the analysis of the diatom community and presents important implications in documenting species distribution and autecology.

Heavy metals pollution and pb isotopic signatures in surface sediments collected from Bohai Bay, North China.

Science.gov (United States)

Gao, Bo; Lu, Jin; Hao, Hong; Yin, Shuhua; Yu, Xiao; Wang, Qiwen; Sun, Ke

2014-01-01

To investigate the characteristics and potential sources of heavy metals pollution, surface sediments collected from Bohai Bay, North China, were analyzed for the selected metals (Cd, Cr, Cu, Ni, Pb, and Zn). The Geoaccumulation Index was used to assess the level of heavy metal pollution. Pb isotopic compositions in sediments were also measured to effectively identify the potential Pb sources. The results showed that the average concentrations of Cd, Cr, Cu, Ni, Pb, and Zn were 0.15, 79.73, 28.70, 36.56, 25.63, and 72.83 mg/kg, respectively. The mean concentrations of the studied metals were slightly higher than the background values. However, the heavy metals concentrations in surface sediments in Bohai Bay were below the other important bays or estuaries in China. The assessment by Geoaccumulation Index indicated that Cr, Zn, and Cd were classified as "the unpolluted" level, while Ni, Cu, and Pb were ranked as "unpolluted to moderately polluted" level. The order of pollution level of heavy metals was: Pb > Ni > Cu > Cr > Zn > Cd. The Pb isotopic ratios in surface sediments varied from 1.159 to 1.185 for (206)Pb/(207)Pb and from 2.456 to 2.482 for (208)Pb/(207)Pb. Compared with Pb isotopic radios in other sources, Pb contaminations in the surface sediments of Bohai Bay may be controlled by the mix process of coal combustion, aerosol particles deposition, and natural sources.

Cenozoic planktonic marine diatom diversity and correlation to climate change.

Directory of Open Access Journals (Sweden)

David Lazarus

Full Text Available Marine planktonic diatoms export carbon to the deep ocean, playing a key role in the global carbon cycle. Although commonly thought to have diversified over the Cenozoic as global oceans cooled, only two conflicting quantitative reconstructions exist, both from the Neptune deep-sea microfossil occurrences database. Total diversity shows Cenozoic increase but is sample size biased; conventional subsampling shows little net change. We calculate diversity from a separately compiled new diatom species range catalog, and recalculate Neptune subsampled-in-bin diversity using new methods to correct for increasing Cenozoic geographic endemism and decreasing Cenozoic evenness. We find coherent, substantial Cenozoic diversification in both datasets. Many living cold water species, including species important for export productivity, originate only in the latest Miocene or younger. We make a first quantitative comparison of diatom diversity to the global Cenozoic benthic ∂(18O (climate and carbon cycle records (∂(13C, and 20-0 Ma pCO2. Warmer climates are strongly correlated with lower diatom diversity (raw: rho = .92, p.9, detrended r>.6, all p<.001, but only weakly over the earlier Cenozoic, suggesting increasingly strong linkage of diatom and climate evolution in the Neogene. Our results suggest that many living marine planktonic diatom species may be at risk of extinction in future warm oceans, with an unknown but potentially substantial negative impact on the ocean biologic pump and oceanic carbon sequestration. We cannot however extrapolate our my-scale correlations with generic climate proxies to anthropogenic time-scales of warming without additional species-specific information on proximate ecologic controls.

Evaluation of Near-Surface Gases in Marine Sediments to Assess Subsurface Petroleum Gas Generation and Entrapment

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Michael A. Abrams

2017-05-01

Full Text Available Gases contained within near-surface marine sediments can be derived from multiple sources: shallow microbial activity, thermal cracking of organic matter and inorganic materials, or magmatic-mantle degassing. Each origin will display a distinctive hydrocarbon and non-hydrocarbon composition as well as compound-specific isotope signature and thus the interpretation of origin should be relatively straightforward. Unfortunately, this is not always the case due to in situ microbial alteration, non-equilibrium phase partitioning, mixing, and fractionation related to the gas extraction method. Sediment gases can reside in the interstitial spaces, bound to mineral or organic surfaces and/or entrapped in carbonate inclusions. The interstitial sediment gases are contained within the sediment pore space, either dissolved in the pore waters (solute or as free (vapour gas. The bound gases are believed to be attached to organic and/or mineral surfaces, entrapped in structured water or entrapped in authigenic carbonate inclusions. The purpose of this paper is to provide a review of the gas types found within shallow marine sediments and examine issues related to gas sampling and extraction. In addition, the paper will discuss how to recognise mixing, alteration and fractionation issues to best interpret the seabed geochemical results and determine gas origin to assess subsurface petroleum gas generation and entrapment.

Resonant inelastic collisions of electrons with diatomic molecules

International Nuclear Information System (INIS)

Houfek, Karel

2012-01-01

In this contribution we give a review of applications of the nonlocal resonance theory which has been successfully used for treating the nuclear dynamics of low-energy electron collisions with diatomic molecules over several decades. We give examples and brief explanations of various structures observed in the cross sections of vibrational excitation and dissociative electron attachment to diatomic molecules such as threshold peaks, boomerang oscillations below the dissociative attachment threshold, or outer-well resonances.

Resonant inelastic collisions of electrons with diatomic molecules

Energy Technology Data Exchange (ETDEWEB)

Houfek, Karel, E-mail: karel.houfek@gmail.com [Institute of Theoretical Physics, Faculty of Mathematics and Physics, Charles University, V Holesovickach 2, 180 00 Prague 8 (Czech Republic)

2012-05-15

In this contribution we give a review of applications of the nonlocal resonance theory which has been successfully used for treating the nuclear dynamics of low-energy electron collisions with diatomic molecules over several decades. We give examples and brief explanations of various structures observed in the cross sections of vibrational excitation and dissociative electron attachment to diatomic molecules such as threshold peaks, boomerang oscillations below the dissociative attachment threshold, or outer-well resonances.

Microplastics Baseline Surveys at the Water Surface and in Sediments of the North-East Atlantic

NARCIS (Netherlands)

Maes, Thomas; van der Meulen, Myra; Devriese, Lisa; Leslie, H.A.; Huvet, Arnaud; Frère, Laura; Robbens, Johan; Vethaak, A.D.

2017-01-01

Microplastic contamination was determined in sediments of the Southern North Sea and floating at the sea surface of NorthWest Europe. Floating concentrations ranged between 0 and 1.5 microplastic/m3, whereas microplastic concentrations in sediments ranged between 0 and 3,146 particles/kg dry weight

Modern sedimentation patterns in Lake El'gygytgyn, NE Russia, derived from surface sediment and inlet streams samples

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V. Wennrich

2013-01-01

Full Text Available Lake El'gygytgyn/NE Russia holds a continuous 3.58 Ma sediment record, which is regarded as the most long-lasting climate archive of the terrestrial Arctic. Based on multi-proxy geochemical, mineralogical, and granulometric analyses of surface sediment, inlet stream and bedrock samples, supplemented by statistical methods, major processes influencing the modern sedimentation in the lake were investigated. Grain-size parameters and chemical elements linked to the input of feldspars from acidic bedrock indicate a wind-induced two-cell current system as major driver of sediment transport and accumulation processes in Lake El'gygytgyn. The distribution of mafic rock related elements in the sediment on the lake floor can be traced back to the input of weathering products of basaltic rocks in the catchment. Obvious similarities in the spatial variability of manganese and heavy metals indicate sorption or co-precipitation of these elements with Fe and Mn hydroxides and oxides. But the similar distribution of organic matter and clay contents might also point to a fixation to organic components and clay minerals. An enrichment of mercury in the inlet streams might be indicative of neotectonic activity around the lake. The results of this study add to the fundamental knowledge of the modern lake processes of Lake El'gygytgyn and its lake-catchment interactions, and thus, yield crucial insights for the interpretation of paleo-data from this unique archive.

Intracellular nitrate in sediments of an oxygen-deficient marine basin is linked to pelagic diatoms

DEFF Research Database (Denmark)

Kamp, Anja; Petro, Caitlin; Røy, Hans

2018-01-01

Intracellular nitrate is an important electron acceptor in oxygen-deficient aquatic environments, either for the nitrate-storing microbes themselves, or for ambient microbial communities through nitrate leakage. This study links the spatial distribution of intracellular nitrate with the abundance...... and identity of nitrate-storing microbes in sediments of the Bornholm Basin, an environmental showcase for severe hypoxia. Intracellular nitrate (up to 270 nmol cm−3 sediment) was detected at all 18 stations along a 35-km transect through the basin and typically extended as deep as 1.6 cm into the sediment...

Sediment plume response to surface melting and supraglacial lake drainages on the Greenland ice sheet

DEFF Research Database (Denmark)

Chu, Vena W.; Smith, Laurence C; Rennermalm, Asa K.

2009-01-01

) supraglacial lake drainage events from MODIS. Results confirm that the origin of the sediment plume is meltwater release from the ice sheet. Interannual variations in plume area reflect interannual variations in surface melting. Plumes appear almost immediately with seasonal surface-melt onset, provided...... the estuary is free of landfast sea ice. A seasonal hysteresis between melt extent and plume area suggests late-season exhaustion in sediment supply. Analysis of plume sensitivity to supraglacial events is less conclusive, with 69% of melt pulses and 38% of lake drainage events triggering an increase in plume...... area. We conclude that remote sensing of sediment plume behavior offers a novel tool for detecting the presence, timing and interannual variability of meltwater release from the ice sheet....

Toxicity of dissolved and precipitated aluminium to marine diatoms.

Science.gov (United States)

Gillmore, Megan L; Golding, Lisa A; Angel, Brad M; Adams, Merrin S; Jolley, Dianne F

2016-05-01

Localised aluminium contamination can lead to high concentrations in coastal waters, which have the potential for adverse effects on aquatic organisms. This research investigated the toxicity of 72-h exposures of aluminium to three marine diatoms (Ceratoneis closterium (formerly Nitzschia closterium), Minutocellus polymorphus and Phaeodactylum tricornutum) by measuring population growth rate inhibition and cell membrane damage (SYTOX Green) as endpoints. Toxicity was correlated to the time-averaged concentrations of different aluminium size-fractions, operationally defined as aluminium exposure varied between diatom species. C. closterium was the most sensitive species (10% inhibition of growth rate (72-h IC10) of 80 (55-100)μg Al/L (95% confidence limits)) while M. polymorphus (540 (460-600)μg Al/L) and P. tricornutum (2100 (2000-2200)μg Al/L) were less sensitive (based on measured total aluminium). Dissolved aluminium was the primary contributor to toxicity in C. closterium, while a combination of dissolved and precipitated aluminium forms contributed to toxicity in M. polymorphus. In contrast, aluminium toxicity to the most tolerant diatom P. tricornutum was due predominantly to precipitated aluminium. Preliminary investigations revealed the sensitivity of C. closterium and M. polymorphus to aluminium was influenced by initial cell density with aluminium toxicity significantly (paluminium toxicity to diatoms do not involve compromising the plasma membrane. These results indicate that marine diatoms have a broad range in sensitivity to aluminium with toxic mechanisms related to both dissolved and precipitated aluminium. Copyright © 2016 Elsevier B.V. All rights reserved.

Targeting sediment management strategies using sediment quantification and fingerprinting methods

Science.gov (United States)

Sherriff, Sophie; Rowan, John; Fenton, Owen; Jordan, Phil; hUallacháin, Daire Ó.

2016-04-01

Cost-effective sediment management is required to reduce excessive delivery of fine sediment due to intensive land uses such as agriculture, resulting in the degradation of aquatic ecosystems. Prioritising measures to mitigate dominant sediment sources is, however, challenging, as sediment loss risk is spatially and temporally variable between and within catchments. Fluctuations in sediment supply from potential sources result from variations in land uses resulting in increased erodibility where ground cover is low (e.g., cultivated, poached and compacted soils), and physical catchment characteristics controlling hydrological connectivity and transport pathways (surface and/or sub-surface). Sediment fingerprinting is an evidence-based management tool to identify sources of in-stream sediments at the catchment scale. Potential sediment sources are related to a river sediment sample, comprising a mixture of source sediments, using natural physico-chemical characteristics (or 'tracers'), and contributions are statistically un-mixed. Suspended sediment data were collected over two years at the outlet of three intensive agricultural catchments (approximately 10 km2) in Ireland. Dominant catchment characteristics were grassland on poorly-drained soils, arable on well-drained soils and arable on moderately-drained soils. High-resolution (10-min) calibrated turbidity-based suspended sediment and discharge data were combined to quantify yield. In-stream sediment samples (for fingerprinting analysis) were collected at six to twelve week intervals, using time-integrated sediment samplers. Potential sources, including stream channel banks, ditches, arable and grassland field topsoils, damaged road verges and tracks were sampled, oven-dried (account for particle size and organic matter selectivity processes. Contributions from potential sources type groups (channel - ditches and stream banks, roads - road verges and tracks, fields - grassland and arable topsoils) were

Spectral radiation dependent photoprotective mechanism in the diatom Pseudo-nitzschia multistriata.

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Christophe Brunet

Full Text Available Phytoplankton, such as diatoms, experience great variations of photon flux density (PFD and light spectrum along the marine water column. Diatoms have developed some rapidly-regulated photoprotective mechanisms, such as the xanthophyll cycle activation (XC and the non-photochemical chlorophyll fluorescence quenching (NPQ, to protect themselves from photooxidative damages caused by excess PFD. In this study, we investigate the role of blue fluence rate in combination with red radiation in shaping photoacclimative and protective responses in the coastal diatom Pseudo-nitzschia multistriata. This diatom was acclimated to four spectral light conditions (blue, red, blue-red, blue-red-green, each of them provided with low and high PFD. Our results reveal that the increase in the XC pool size and the amplitude of NPQ is determined by the blue fluence rate experienced by cells, while cells require sensing red radiation to allow the development of these processes. Variations in the light spectrum and in the blue versus red radiation modulate either the photoprotective capacity, such as the activation of the diadinoxanthin-diatoxanthin xanthophyll cycle, the diadinoxanthin de-epoxidation rate and the capacity of non-photochemical quenching, or the pigment composition of this diatom. We propose that spectral composition of light has a key role on the ability of diatoms to finely balance light harvesting and photoprotective capacity.

Production and consumption of dimethylsulfide (DMS) and dimethylsulfoniopropionate (DMSP) in a diatom dominated intertidal sediment

NARCIS (Netherlands)

Van Bergeijk, S.A.; Schönefeldt, K.; Stal, L.J.; Huisman, J.

2002-01-01

Intertidal sediments usually contain a high amount of dimethylsulfoniopropionate (DMSP) and therefore represent environments with a potentially high emission of dimethylsulfide (DMS). However, knowledge on production and release of DMSP in intertidal sediments is limited. Here, we present data on

The application and testing of diatom-based indices of stream water ...

African Journals Online (AJOL)

The application and testing of diatom-based indices of stream water quality in Chinhoyi Town, Zimbabwe. ... PROMOTING ACCESS TO AFRICAN RESEARCH ... test the applicability of foreign diatom-based water quality assessment indices to ...

Physical and Mechanical Properties of Surface Sediments and methane hydrate-bearing sediments in the Shenhu area of South China Sea

Science.gov (United States)

Jiang, J.; Shen, Z.; Jia, Y.

2017-12-01

Methane hydrates are superior energy resources and potential predisposing factors of geohazard. With the success in China's persistent exploitation of methane hydrates in the Shenhu area of South China Sea for 60 days, there is an increasing demand for detailed knowledge of sediment properties and hazard assessment in this area. In this paper, the physical and mechanical properties of both the surface sediments and methane hydrate-bearing sediments (MHBS) in the exploitation area, the Shenhu area of South China Sea, were investigated using laboratory geotechnical experiments, and triaxial tests were carried out on remolded sediment samples using a modified triaxial apparatus. The results show that sediments in this area are mainly silt with high moisture content, high plasticity, low permeability and low shear strength. The moisture content and permeability decrease while the shear strength increases with the increasing depth. The elastic modulus and peak strength of MHBS increase with the increasing effective confining pressure and higher hydrate saturation. The cohesion increases with higher hydrate saturation while the internal friction angle is barely affected by hydrate saturation. The obtained results demonstrate clearly that methane hydrates have significant impacts on the physical and mechanical properties of sediments and there is still a wide gap in knowledge about MHBS.

The effects of phosphorus limitation on carbon metabolism in diatoms.

Science.gov (United States)

Brembu, Tore; Mühlroth, Alice; Alipanah, Leila; Bones, Atle M

2017-09-05

Phosphorus is an essential element for life, serving as an integral component of nucleic acids, lipids and a diverse range of other metabolites. Concentrations of bioavailable phosphorus are low in many aquatic environments. Microalgae, including diatoms, apply physiological and molecular strategies such as phosphorus scavenging or recycling as well as adjusting cell growth in order to adapt to limiting phosphorus concentrations. Such strategies also involve adjustments of the carbon metabolism. Here, we review the effect of phosphorus limitation on carbon metabolism in diatoms. Two transcriptome studies are analysed in detail, supplemented by other transcriptome, proteome and metabolite data, to gain an overview of different pathways and their responses. Phosphorus, nitrogen and silicon limitation responses are compared, and similarities and differences discussed. We use the current knowledge to propose a suggestive model for the carbon flow in phosphorus-replete and phosphorus-limited diatom cells.This article is part of the themed issue 'The peculiar carbon metabolism in diatoms'. © 2017 The Authors.

Ribosomal RNA analysis indicates a benthic pennate diatom ancestry for the endosymbionts of the dinoflagellates Peridinium foliaceum and Peridinium balticum (Pyrrhophyta).

Science.gov (United States)

Chesnick, J M; Kooistra, W H; Wellbrock, U; Medlin, L K

1997-01-01

The establishment of chloroplasts as cellular organelles in the dinoflagellate, heterokont (stramenopile), haptophyte, and cryptophyte algae is widely accepted to have been the result of secondary endosymbiotic events, that is, the uptake of a photosynthetic eukaryote by a phagotrophic eukaryote. However, the circumstances that promote such associations between two phylogenetically distinct organisms and result in the integration of their genomes to form a single functional photosynthetic cell is unclear. The dinoflagellates Peridinium foliaceum and Peridinium balticum are unusual in that each contains a membrane-bound eukaryotic heterokont endosymbiont. These symbioses have been interpreted, through data derived from ultrastructural and biochemical investigations, to represent an intermediate stage of secondary endosymbiotic chloroplast acquisition. In this study we have examined the phylogenetic origin of the P. foliaceum and P. balticum heterokont endosymbionts through analysis of their nuclear small subunit ribosomal RNA genes. Our analyses clearly demonstrate both endosymbionts are pennate diatoms belonging to the family Bacillariaceae. Since members of the Bacillariaceae are usually benthic, living on shallow marine sediments, the manner in which establishment of a symbiosis between a planktonic flagellated dinoflagellate and a bottom-dwelling diatom is discussed. In particular, specific environmentally-associated life strategy stages of the host and symbiont, coupled with diatom food preferences by the dinoflagellate, may have been vital to the formation of this association.

On the bioavailability of trace metals in surface sediments: a combined geochemical and biological approach.

Science.gov (United States)

Roosa, Stéphanie; Prygiel, Emilie; Lesven, Ludovic; Wattiez, Ruddy; Gillan, David; Ferrari, Benoît J D; Criquet, Justine; Billon, Gabriel

2016-06-01

The bioavailability of metals was estimated in three river sediments (Sensée, Scarpe, and Deûle Rivers) impacted by different levels of Cu, Cd, Pb, and Zn (Northern France). For that, a combination of geochemistry and biological responses (bacteria and chironomids) was used. The results obtained illustrate the complexity of the notion of "bioavailability." Indeed, geochemical indexes suggested a low toxicity, even in surface sediments with high concentrations of total metals and a predicted severe effect levels for the organisms. This was also suggested by the abundance of total bacteria as determined by DAPI counts, with high bacterial cell numbers even in contaminated areas. However, a fraction of metals may be bioavailable as it was shown for chironomid larvae which were able to accumulate an important quantity of metals in surface sediments within just a few days.We concluded that (1) the best approach to estimate bioavailability in the selected sediments is a combination of geochemical and biological approaches and that (2) the sediments in the Deûle and Scarpe Rivers are highly contaminated and may impact bacterial populations but also benthic invertebrates.

Aerobic biodegradation potential of endocrine disrupting chemicals in surface-water sediment at Rocky Mountains National Park, USA

Science.gov (United States)

Bradley, Paul M.; Battaglin, William A.; Iwanowicz, Luke R.; Clark, Jimmy M.; Journey, Celeste A.

2016-01-01

Endocrine disrupting chemicals (EDC) in surface water and bed sediment threaten the structure and function of aquatic ecosystems. In natural, remote, and protected surface-water environments where contaminant releases are sporadic, contaminant biodegradation is a fundamental driver of exposure concentration, timing, duration, and, thus, EDC ecological risk. Anthropogenic contaminants, including known and suspected EDC, were detected in surface water and sediment collected from 2 streams and 2 lakes in Rocky Mountains National Park (ROMO). The potential for aerobic EDC biodegradation was assessed in collected sediments using 6 14C-radiolabeled model compounds. Aerobic microbial mineralization of natural (estrone and 17β-estradiol) and synthetic (17α-ethinylestradiol) estrogen was significant at all sites. ROMO bed sediment microbial communities also effectively degraded the xenoestrogens, bisphenol-A and 4-nonylphenol. The same sediment samples exhibited little potential for aerobic biodegradation of triclocarban, however, illustrating the need to assess a wider range of contaminant compounds. The current results support recent concerns over the widespread environmental occurrence of carbanalide antibacterials, like triclocarban and triclosan, and suggest that backcountry use of products containing these compounds should be discouraged.

Environmental assessment of polycyclic aromatic hydrocarbons (PAHs) in surface sediments of the Santander Bay, Northern Spain.

Science.gov (United States)

Viguri, J; Verde, J; Irabien, A

2002-07-01

Samples of intertidal surface sediments (0-2 cm) were collected in 17 stations of the Santander Bay, Cantabric Sea, Northern Spain. The concentrations of polycyclic aromatic hydrocarbons (PAHs), 16, were analysed by HPLC and MS detection. Surface sediments show a good linear correlation among the parameters of the experimental organic matter evaluation, where total carbon (TC) and loss on ignition (LOI) are approximately 2.5 and 5 times total organic carbon (TOC). A wide range of TOC from 0.08% to 4.1%, and a broad distribution of the sum of sigma16PAHs, from 0.02 to 344.6 microg/g d.w., which can be correlated by an exponential equation to the TOC, has been identified. A qualitative relationship may be established between the industrial input along the rivers and the concentration of sigma6PAHs in the sediments of the estuaries: Boo estuary (8404-4631 microg/g OC), Solia-San Salvador estuaries (305-113 microg/g OC) and Cubas estuary (31-32 microg/g OC). This work shows a dramatic change in the spatial distribution in the concentration of PAHs of intertidal surface sediments. The left edge of the Bay has the main traffic around the city and the major source of PAHs is from combustion processes and estuarine inputs, leading to medium values of PAHs in the sediments; the right edge of the Bay has much lesser anthropogenic activities leading to lower values of PAHs in sediments. The distribution of individual PAHs in sediments varies widely depending on their structure and molecular weight; the 4-6 ring aromatics predominate in polluted sediments due to their higher persistence. The isomer ratio does not allow any clear identification of the PAHs origin. Environmental evaluation according to Dutch guidelines and consensus sediment quality guidelines based on ecotoxicological data leads to the same conclusion, sediments in the Santander Bay show a very different environmental quality depending on the spatial position from heavily polluted/medium effects to non

A novel sterane, 27-nor-24-methyl-5α-cholestane, in sediments

Science.gov (United States)

Schouten, Stefan; Sinninghe Damsté, Jaap S.; Schoell, Martin; de Leeuw, Jan W.

1994-09-01

A novel sterane, 27-nor-24-methyl-5α-cholestane, has been identified in sedimentary hydrocarbon mixtures by coinjection with an authentic standard. The C27 sterane occurs in silica-rich sediments from the Monterey Formation, USA, the Onnagawa Formation, Japan, and the Menilite Shale, Poland, and in bituminous marls from the Vena del Gesso basin, Italy. The compound seems to be biosynthetically related to 24-norcholestanes which co-occurs in sometimes relatively high amounts. The 13C-content of the sterane in the Monterey Formation indicates an algal source similar to other steranes present in this sediment. A diatom or a dinoflagellate source is suggested for this compound.

Paleolimnological assessment of nutrient enrichment on diatom assemblages in a priori defined nitrogen- and phosphorus-limited lakes downwind of the Athabasca Oil Sands, Canada

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Kathleen R. Laird

2017-04-01

Full Text Available As the industrial footprint of the Athabasca Oil Sands Region (AOSR continues to expand, concern about the potential impacts of pollutants on the surrounding terrestrial and aquatic ecosystems need to be assessed. An emerging issue is whether recent increases in lake production downwind of the development can be linked to AOSR activities, and/or whether changing climatic conditions are influencing lake nutrient status. To decipher the importance of pollutants, particularly atmospheric deposition of reactive nitrogen (Nr, and the effects of climate change as potential sources of increasing lake production, lakes from both within and outside of the nitrogen deposition zone were analyzed for historical changes in diatom assemblages. Lake sediment cores were collected from a priori defined nitrogen (N - and phosphorus (P - limited lakes within and outside the N plume associated with the AOSR. Diatom assemblages were quantified at sub-decadal resolution since ca. 1890 to compare conditions prior to oil sands expansion and regional climate warming, to the more recent conditions in each group of lakes (Reference and Impacted, N- and P-limited lakes. Analyses of changes in assemblage similarity and species turnover indicates that changes in diatom assemblages were minimal both within and across all lake groups.  Small changes in percent composition of planktonic taxa, particularly small centric taxa (Discostella and Cyclotella species and pennate taxa, such as Asterionella formosa and Fragilaria crotonensis, occurred in some of the lakes. While these changes were consistent with potential climate effects on algal growth, water column stability and other factors; the timing and direction of biotic changes were variable among sites suggesting that any apparent response to climate was lake dependent. The absence of a consistent pattern of diatom changes associated with receipt of reactive nitrogen or intrinsic nutrient-limitation status of the lake

Assessing the influence of multiple stressors on stream diatom metrics in the upper Midwest, USA

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Munn, Mark D.; Waite, Ian R.; Konrad, Christopher P.

2018-01-01

Water resource managers face increasing challenges in identifying what physical and chemical stressors are responsible for the alteration of biological conditions in streams. The objective of this study was to assess the comparative influence of multiple stressors on benthic diatoms at 98 sites that spanned a range of stressors in an agriculturally dominated region in the upper Midwest, USA. The primary stressors of interest included: nutrients, herbicides and fungicides, sediment, and streamflow; although the influence of physical habitat was incorporated in the assessment. Boosted Regression Tree was used to examine both the sensitivity of various diatom metrics and the relative importance of the primary stressors. Percent Sensitive Taxa, percent Highly Motile Taxa, and percent High Phosphorus Taxa had the strongest response to stressors. Habitat and total phosphorous were the most common discriminators of diatom metrics, with herbicides as secondary factors. A Classification and Regression Tree (CART) model was used to examine conditional relations among stressors and indicated that fine-grain streams had a lower percentage of Sensitive Taxa than coarse-grain streams, with Sensitive Taxa decreasing further with increased water temperature (>30 °C) and triazine concentrations (>1500 ng/L). In contrast, streams dominated by coarse-grain substrate contained a higher percentage of Sensitive Taxa, with relative abundance increasing with lower water temperatures (water depth (water temperature appears to be a major limiting factor in Midwest streams; whereas both total phosphorus and percent fines showed a slight subsidy-stress response. While using benthic algae for assessing stream quality can be challenging, field-based studies can elucidate stressor effects and interactions when the response variables are appropriate, sufficient stressor resolution is achieved, and the number and type of sites represent a gradient of stressor conditions and at least a quasi

Evolutionary origins and functions of the carotenoid biosynthetic pathway in marine diatoms.

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Sacha Coesel

Full Text Available Carotenoids are produced by all photosynthetic organisms, where they play essential roles in light harvesting and photoprotection. The carotenoid biosynthetic pathway of diatoms is largely unstudied, but is of particular interest because these organisms have a very different evolutionary history with respect to the Plantae and are thought to be derived from an ancient secondary endosymbiosis between heterotrophic and autotrophic eukaryotes. Furthermore, diatoms have an additional xanthophyll-based cycle for dissipating excess light energy with respect to green algae and higher plants. To explore the origins and functions of the carotenoid pathway in diatoms we searched for genes encoding pathway components in the recently completed genome sequences of two marine diatoms. Consistent with the supplemental xanthophyll cycle in diatoms, we found more copies of the genes encoding violaxanthin de-epoxidase (VDE and zeaxanthin epoxidase (ZEP enzymes compared with other photosynthetic eukaryotes. However, the similarity of these enzymes with those of higher plants indicates that they had very probably diversified before the secondary endosymbiosis had occurred, implying that VDE and ZEP represent early eukaryotic innovations in the Plantae. Consequently, the diatom chromist lineage likely obtained all paralogues of ZEP and VDE genes during the process of secondary endosymbiosis by gene transfer from the nucleus of the algal endosymbiont to the host nucleus. Furthermore, the presence of a ZEP gene in Tetrahymena thermophila provides the first evidence for a secondary plastid gene encoded in a heterotrophic ciliate, providing support for the chromalveolate hypothesis. Protein domain structures and expression analyses in the pennate diatom Phaeodactylum tricornutum indicate diverse roles for the different ZEP and VDE isoforms and demonstrate that they are differentially regulated by light. These studies therefore reveal the ancient origins of several

Evolutionary origins and functions of the carotenoid biosynthetic pathway in marine diatoms.

Science.gov (United States)

Coesel, Sacha; Oborník, Miroslav; Varela, Joao; Falciatore, Angela; Bowler, Chris

2008-08-06

Carotenoids are produced by all photosynthetic organisms, where they play essential roles in light harvesting and photoprotection. The carotenoid biosynthetic pathway of diatoms is largely unstudied, but is of particular interest because these organisms have a very different evolutionary history with respect to the Plantae and are thought to be derived from an ancient secondary endosymbiosis between heterotrophic and autotrophic eukaryotes. Furthermore, diatoms have an additional xanthophyll-based cycle for dissipating excess light energy with respect to green algae and higher plants. To explore the origins and functions of the carotenoid pathway in diatoms we searched for genes encoding pathway components in the recently completed genome sequences of two marine diatoms. Consistent with the supplemental xanthophyll cycle in diatoms, we found more copies of the genes encoding violaxanthin de-epoxidase (VDE) and zeaxanthin epoxidase (ZEP) enzymes compared with other photosynthetic eukaryotes. However, the similarity of these enzymes with those of higher plants indicates that they had very probably diversified before the secondary endosymbiosis had occurred, implying that VDE and ZEP represent early eukaryotic innovations in the Plantae. Consequently, the diatom chromist lineage likely obtained all paralogues of ZEP and VDE genes during the process of secondary endosymbiosis by gene transfer from the nucleus of the algal endosymbiont to the host nucleus. Furthermore, the presence of a ZEP gene in Tetrahymena thermophila provides the first evidence for a secondary plastid gene encoded in a heterotrophic ciliate, providing support for the chromalveolate hypothesis. Protein domain structures and expression analyses in the pennate diatom Phaeodactylum tricornutum indicate diverse roles for the different ZEP and VDE isoforms and demonstrate that they are differentially regulated by light. These studies therefore reveal the ancient origins of several components of the

Modern limnology, sediment accumulation and varve formation processes in Lake Żabińskie, northeastern Poland: comprehensive process studies as a key to understand the sediment record

Directory of Open Access Journals (Sweden)

Alicja Bonk

2014-12-01

Full Text Available Reconstructions of paleoclimatic and paleoenvironmental data from sediment records require a thorough knowledge of the physical, chemical and biological factors that influence sediment-formation processes and signal preservation in lake sediments. Lake Żabińskie, an eutrophic hardwater lake located in northeastern Poland (Masurian Lake District, provides an unique environment for the investigation of processes that lead to the varve formation. During a two-year long observation period we investigated limnological and hydrochemical conditions within the water column, recent sediment fluxes and laminations preserved in the sediments of this lake to understand the relationship between the lake water properties and the sediment formation processes. We demonstrate that different mixing patterns may occur in Lake Żabińskie, from dimictic to meromictic depending on the meteorological conditions. Regardless of the water mixing pattern, the lake was stratified during much of the year which led to significant differences between surface and near-bottom water environments. The hypolimnion was characterized by higher conductivity and anoxic conditions with only short periods of better oxygenation, which created conditions ideal for the formation and preservation of biogenic varves. The material collected from the sediment trap revealed notable changes in sediment fluxes with characteristic spring maxima and, optionally, a second late fall maxima. Considerable variability was also observed for the fluxes of total organic carbon, biogenic silica and calcite. Microscopic investigation of the topmost sediments revealed a complex structure of the varves showing a distinct spring calcite lamina followed by several fine calcite laminae interbedded with diatom-rich laminae and, finally, by an organic-rich lamina with minerogenic admixtures deposited during winter. This seasonal variability was also reflected in the chemical composition inferred from high

Chlorophyll Diagenesis in the Water Column and Sediments of the Black Sea

Science.gov (United States)

1993-02-01

Washington. Eyssen H. J., Parmentier G. G., Compemolle G. C., De Pauw G., and Piessens-Denef M. (1973) Biohydrogenation of sterols by Eubacterium ATCC...sediments. I 144 dominant diatom species identified in the Black Sea, Rhizoselenium spp , is cholesterol (Volkman, 1986; Benli, 1987). The flux of cholesterol...in the Clack Sea, for example Gonyaulax polygramma and Peridinium spp ., do not possess this sterol (Volkman, 1986; Benli, 1987). The appeav ince of

Diatoms as an indicator for tile drainage flow in a German lowland catchment.

Science.gov (United States)

Wu, Naicheng; Faber, Claas; Ulrich, Uta; Fohrer, Nicola

2018-01-01

The separation of runoff components within a model simulation is of great importance for a successful implementation of management measures. Diatoms could be a promising indicator for tile drainage flow due to their diverse preferences to different aquatic habitats. In this study, we collected diatom samples of 9 sites (4 tile drainage, TD, and 5 river sites, Ri) in a German lowland catchment at a weekly or biweekly time step from March to July 2013 with the aim of testing the suitability of diatoms for tile drainage flow, which is typical for lowland catchment. Planothidium lanceolatum , Ulnaria biceps , and Navicula gregaria dominated in TD sites with relative abundances of 22.2, 21.5, and 10.9%, respectively. For Ri sites, the most abundant species was Navicula lanceolata (20.5%), followed by Ulnaria biceps (12.9%), Cyclotella meneghiniana (9.5%), and Planothidium lanceolatum (9.3%). Compared with Ri sites, TD had a lower diatom density, biomass, species richness, and percentage of Aquatic/Riparian diatoms (AqRi%). However, the proportion of Riparian diatoms (RiZo%) increased at TD. Indicator value method (IndVal) revealed that the two groups (Ri and TD) were characterized by different indicator species. Fifteen taxa, including Cocconeis placentula , Cyclotella meneghiniana , N. lanceolata , and U. biceps , were significant indicators for Ri sites. Planothidium lanceolatum , Achnanthidium minutissimum , and Navicula gregaria were significant indicators for TD sites. A pronounced variation was found in the species lists of diatom community between Ri and TD water body types associated with different indicator species. With respect to hydrograph separation, these findings highlight the suitability of diatoms as an indicator for tile drainage flow. However, spatial and temporal variations of diatoms should be considered in future surveys.

Sedimentological, mineralogical, and geochemical results from surface sediments and the sediment record from Site 2 of the ICDP drilling project at Lake Towuti, Indonesia

Science.gov (United States)

Hasberg, A. K.; Melles, M.; Wennrich, V.; Vogel, H.; Just, J.; Russell, J. M.; Bijaksana, S.; Morlock, M.; Opitz, S.

2017-12-01

More than 1000 m of sediment core were recovered in spring 2015 from three different drill sites in tropical Lake Towuti (2.5°S, 121°E), Indonesia, during the Towuti Drilling Project (TDP) of the International Continental Scientific Drilling Program (ICDP). Furthermore, a set of 84 lake surface sediment samples, distributed over the entire lake, was collected in order to better understand modern sedimentary processes. The surface samples were investigated for physical, chemical, mineralogical, and biological properties at the University of Cologne (UoC), Germany. On the sediment cores macro- and microscopical lithological descriptions, line-scan imaging, logging of physical properties (MSCL), and subsampling was conducted at the National Lacustrine Core Facility of the University of Minnesota, USA, in November 2015 and January 2016. Afterwards, the archive core halves and 672 subsamples of TDP Site 2 were shipped to the UoC for X-Ray Fluorescence (XRF) scanning and sedimentological, geochemical, and mineralogical analyses, respectively, supplemented by visible to near-infrared spectroscopy (VNIR) at Brown University, USA. The data from the surface samples evidence that allochthonous sedimentation in Lake Towuti today is dominated by fluvial supply from five distinguishable source areas: (i) the Mahalona River to the north, which drains lakes Mahalona and Matano, (ii) inlets around the village of Timampu to the northwest, (iii) the Loeha River to the east, (iv) the Lengke River to the south, and (v) the Lemo-Lemo River to the northeast of Lake Towuti. Of these, source areas (ii) and (iii) as well as (iv) and (v) have similar geochemical compositions, respectively. In addition, the lake sedimentation is significantly influenced by gravitational sediment supply from steep slopes as well as lake-internal gravitational and density-driven processes. The uppermost 41 m of sediment core 2A consist of pelagic sediments (totaling 11 m) and event layers from mass movement

The relevance of diatoms for water quality assessment in South ...

African Journals Online (AJOL)

Water quality assessment protocols based on the use of diatoms are now well developed and their value substantiated at an international level. The use of diatoms is not designed or intended to be a “rapid” technology. The detailed level of information generated from the procedure outweighs perceived disadvantages of ...

Improving understanding of the underlying physical process of sediment wash-off from urban road surfaces

Science.gov (United States)

Muthusamy, Manoranjan; Tait, Simon; Schellart, Alma; Beg, Md Nazmul Azim; Carvalho, Rita F.; de Lima, João L. M. P.

2018-02-01

Among the urban aquatic pollutants, the most common is sediment which also acts as a transport medium for many contaminants. Hence there is an increasing interest in being able to better predict the sediment wash-off from urban surfaces. The exponential wash-off model is the most widely used method to predict the sediment wash-off. Although a number of studies proposed various modifications to the original exponential wash-off equation, these studies mostly looked into one parameter in isolation thereby ignoring the interactions between the parameters corresponding to rainfall, catchment and sediment characteristics. Hence in this study we aim (a) to investigate the effect of rainfall intensity, surface slope and initial load on wash-off load in an integrated and systematic way and (b) to subsequently improve the exponential wash-off equation focusing on the effect of the aforementioned three parameters. A series of laboratory experiments were carried out in a full-scale setup, comprising of a rainfall simulator, a 1 m2 bituminous road surface, and a continuous wash-off measuring system. Five rainfall intensities ranging from 33 to 155 mm/h, four slopes ranging from 2 to 16% and three initial loads ranging from 50 to 200 g/m2 were selected based on values obtained from the literature. Fine sediment with a size range of 300-600 μm was used for all of the tests. Each test was carried out for one hour with at least 9 wash-off samples per test collected. Mass balance checks were carried out for all the tests as a quality control measure to make sure that there is no significant loss of sand during the tests. Results show that the washed off sediment load at any given time is proportional to initial load for a given combination of rainfall intensity and surface slope. This indicates the importance of dedicated modelling of build-up so as to subsequently predict wash-off load. It was also observed that the maximum fraction that is washed off from the surface increases

Effects of farmhouse hotel and paper mill effluents on bacterial community structures in sediment and surface water of Nanxi River, China.

Science.gov (United States)

Lu, Xiao-Ming; Lu, Peng-Zhen

2014-11-01

The pyrosequencing technique was used to evaluate bacterial community structures in sediment and surface water samples taken from Nanxi River receiving effluents from a paper mill and a farmhouse hotel, respectively. For each sample, 4,610 effective bacterial sequences were selected and used to do the analysis of diversity and abundance, respectively. Bacterial phylotype richness in the sediment sample without effluent input was higher than the other samples, and the surface water sample with addition of effluent from the paper mill contained the least richness. Effluents from both the paper mill and farmhouse hotel have a potential to reduce the bacterial diversity and abundance in the sediment and surface water, especially it is more significant in the sediment. The effect of the paper mill effluent on the sediment and surface water bacterial communities was more serious than that of the farmhouse hotel effluent. Characterization of microbial community structures in the sediment and surface water from two tributaries of the downstream river indicated that various effluents from the paper mill and farmhouse hotel have the similar potential to decrease the natural variability in riverine microbial ecosystems.

Radiational and energetic characteristics of diatomic molecules (data base)

International Nuclear Information System (INIS)

Kuznetsova, L.A.; Pazyuk, E.A.; Stolyarov, A.V.

1993-01-01

Data base on radiational and energetic characteristics of diatomic molecules was created. The base consists of two parts: reference system and recommended data system. The reference system contains the information about studies of radiational and energetic parameters of more than 1500 electronic states and 1700 electron transfers for ∼ 350 diatomic molecules and their ions. The base bibliography includes ∼ 3000 publications. 11 refs., 1 figs

Radiological impact of surface water and sediment near uranium mining sites.

Science.gov (United States)

Ivanova, K; Stojanovska, Z; Badulin, V; Kunovska, B; Yovcheva, M

2015-12-01

The aim of this study is to assess the radiological impact of surface water and sediment around uranium mining sites 20 years after their closing. The areas under observations are 31 former classical underground uranium mining and exploratory sites in Bulgaria, named as objects. The extraction and processing of uranium ores in the Republic of Bulgaria were ended in 1992. To assess the radiological impact of radionuclides field expeditions were performed to sample water and bottom sediment. The migration of uranium through surface water was examined as one of the major pathways for contamination spread. The range of uranium concentration in water flowing from the mining sites was from 0.012 to 6.8 mgU l(-1) with a geometric mean of 0.192 mgU l(-1). The uranium concentrations in water downstream the mining sites were approximately 3 times higher than the background value (upstream). The concentrations of Unat, (226)Ra, (210)Pb, and (232)Th in the sediment of downstream river were higher than those upstream by 3.4, 2.6, 2, and 1.7 times, respectively. The distribution coefficient of uranium reflects its high mobility in most of the sites. In order to evaluate the impact on people as well as site prioritization for more detailed assessment and water management, screening dose assessments were done.

Biological monitoring of lotic ecosystems: the role of diatoms Biomonitoramento dos ecossistemas lóticos: o papel das diatomáceas

Directory of Open Access Journals (Sweden)

T. Bere

2010-08-01

Full Text Available Increasing anthropogenic influence on lotic environments as a result of civilisation has captured public interest because of the consequent problems associated with deterioration of water quality. Various biological monitoring methods that provide a direct measure of ecological integrity by using the response of biota to environmental changes have been developed to monitor the ecological status of lotic environments. Diatoms have been used extensively in this regard and this review attempts to summarise the basic concepts associated with biological monitoring using benthic diatoms. Where possible, examples from work carried out in Brazil are used.O aumento da influência antropogênica sobre ambientes lóticos como resultado da civilização conquistou o interesse público por causa de problemas relacionados com a consequente deterioração da qualidade da água. Vários métodos de biomonitoramento que fornecem uma medida direta da integridade ecológica usando a resposta da biota a alterações ambientais têm sido desenvolvidos para monitorar o estado ecológico de ecossistemas lóticos. Diatomáceas têm sido amplamente utilizadas e esta revisão tenta resumir os conceitos básicos associados ao monitoramento biológico utilizando diatomáceas bentônicas. Sempre que possível, exemplos de trabalhos realizados no Brasil serão utilizados.

Insights into global diatom distribution and diversity in the world’s ocean

KAUST Repository

Malviya, Shruti; Scalco, Eleonora; Audic, Sté phane; Vincent, Flora; Veluchamy, Alaguraj; Poulain, Julie; Wincker, Patrick; Iudicone, Daniele; de Vargas, Colomban; Bittner, Lucie; Zingone, Adriana; Bowler, Chris

2016-01-01

Diatoms (Bacillariophyta) constitute one of the most diverse and ecologically important groups of phytoplankton. They are considered to be particularly important in nutrient-rich coastal ecosystems and at high latitudes, but considerably less so in the oligotrophic open ocean. The Tara Oceans circumnavigation collected samples from a wide range of oceanic regions using a standardized sampling procedure. Here, a total of ∼12 million diatom V9-18S ribosomal DNA (rDNA) ribotypes, derived from 293 sizefractionated plankton communities collected at 46 sampling sites across the global ocean euphotic zone, have been analyzed to explore diatom global diversity and community composition. We provide a new estimate of diversity of marine planktonic diatoms at 4,748 operational taxonomic units (OTUs). Based on the total assigned ribotypes, Chaetoceros was the most abundant and diverse genus, followed by Fragilariopsis, Thalassiosira, and Corethron. We found only a few cosmopolitan ribotypes displaying an even distribution across stations and high abundance, many of which could not be assigned with confidence to any known genus. Three distinct communities from South Pacific, Mediterranean, and Southern Ocean waters were identified that share a substantial percentage of ribotypes within them. Sudden drops in diversity were observed at Cape Agulhas, which separates the Indian and Atlantic Oceans, and across the Drake Passage between the Atlantic and Southern Oceans, indicating the importance of these ocean circulation choke points in constraining diatom distribution and diversity. We also observed high diatom diversity in the open ocean, suggesting that diatoms may be more relevant in these oceanic systems than generally considered.

Insights into global diatom distribution and diversity in the world’s ocean

KAUST Repository

Malviya, Shruti

2016-03-01

Diatoms (Bacillariophyta) constitute one of the most diverse and ecologically important groups of phytoplankton. They are considered to be particularly important in nutrient-rich coastal ecosystems and at high latitudes, but considerably less so in the oligotrophic open ocean. The Tara Oceans circumnavigation collected samples from a wide range of oceanic regions using a standardized sampling procedure. Here, a total of ∼12 million diatom V9-18S ribosomal DNA (rDNA) ribotypes, derived from 293 sizefractionated plankton communities collected at 46 sampling sites across the global ocean euphotic zone, have been analyzed to explore diatom global diversity and community composition. We provide a new estimate of diversity of marine planktonic diatoms at 4,748 operational taxonomic units (OTUs). Based on the total assigned ribotypes, Chaetoceros was the most abundant and diverse genus, followed by Fragilariopsis, Thalassiosira, and Corethron. We found only a few cosmopolitan ribotypes displaying an even distribution across stations and high abundance, many of which could not be assigned with confidence to any known genus. Three distinct communities from South Pacific, Mediterranean, and Southern Ocean waters were identified that share a substantial percentage of ribotypes within them. Sudden drops in diversity were observed at Cape Agulhas, which separates the Indian and Atlantic Oceans, and across the Drake Passage between the Atlantic and Southern Oceans, indicating the importance of these ocean circulation choke points in constraining diatom distribution and diversity. We also observed high diatom diversity in the open ocean, suggesting that diatoms may be more relevant in these oceanic systems than generally considered.

Influence of land-use patterns on benthic diatom communities and ...

African Journals Online (AJOL)

The objective of this study was to determine the effects of land-use patterns on both diatom community composition and water quality in tropical streams during the dry season. Benthic diatom collections and water quality sampling were done 4 times at 10 sites. A suite of environmental variables that varied with human ...

Dynamics of microalgal communities in the water-column/sediment interface of the inner shelf off Parana State, Southern Brazil

Directory of Open Access Journals (Sweden)

Ricardo Luiz Queiroz

2004-12-01

Full Text Available The composition and biomass of the microalgal community at the water-column/sediment interface on the continental shelf off Parana State (Brazil were studied every 2 months during 1999. Samples for cell identification and determination of chlorophyll a were taken from the interface layer and at discrete depths up to 4 m above the sediment. Results showed a community mainly formed by benthic and planktonic diatoms >30 µm, benthic diatoms 30 µm, which accounted for most of the pigment biomass, were resuspended from the interface after turbulent periods, and may take advantage of calm periods to stay and grow at the interface. Small benthic diatoms were more susceptible to wind-induced turbulence occurring in higher densities in the water column just above the water-sediment interface. A cyanobacterial bloom (Trichodesmiun was observed at these bottom layers in the spring-summer periods.A composição geral e a biomassa da comunidade microalgal da interface sedimento/água da plataforma do Estado do Paraná (Brasil foram estudadas em 1999 em relação ao regime de ventos. A cada dois meses foram coletadas amostras para a identificação de organismos e determinação de clorofila a, na interface água-sedimento e em profundidades discretas, ao longo da coluna d'água, até 4m acima do sedimento. Os resultados obtidos revelaram uma comunidade constituída principalmente por diatomáceas planctônicas e bentônicas maiores que 30 µm, diatomáceas bentônicas menores que 30 µm, e cianobactérias coloniais. As densidades celulares foram geralmente mais altas na interface. Eventos de mistura e sedimentação parecem ser determinantes na regulação da composição e biomassa de tais comunidades. Formas menores, mais susceptíveis à turbulência, dominaram a comunidade de água de fundo na maioria das ocasiões, e foram as mais abundantes na interface apenas em períodos de extrema estabilidade. Células maiores, aparentemente contendo a maior parte

Interaction of Freshwater Diatom with Gold Nanoparticles: Adsorption, Assimilation, and Stabilization by Cell Exometabolites

Directory of Open Access Journals (Sweden)

Aridane G. González

2018-03-01

Full Text Available The rising concern about the potential toxicity of synthetic gold nanoparticles (AuNPs in aquatic environments requires a rigorous estimation of physico-chemical parameters of reactions between AuNPs and major freshwater microorganisms. This study addresses the interaction of 10-nm size, positively charged AuNPs with periphytic freshwater diatoms (Eolimna minima. The adsorption experiments on viable cells were performed in 10 mM NaCl and 5 mM NaCl + 5 mM NaHCO3 solution at a variable pH (3–10, at an AuNPs concentration from 1 µg/L to 10,000 µg/L, and an exposure time from a few minutes to 55 days. Three types of experiments, adsorption as a function of time (kinetics, pH-dependent adsorption edge, and constant-pH “Langmuirian” type isotherms, were conducted. In addition, long-term interactions (days to weeks of live diatoms (under light and in the darkness were performed. The adsorption was maximal at a pH from 3 to 6 and sizably decreased at a pH of 6 to 10. Results of adsorption experiments were modeled using a second order kinetic model, a Linear Programming Model, Freundlich isotherm, and a ligand binding equation for one site competition. The adsorption of AuNPs(+ most likely occurred on negatively-charged surface sites of diatom cell walls such as carboxylates or phosphorylates, similar to previously studied metal cations. Under light exposure, the AuNPs were stabilized in aqueous solution in the presence of live cells, probably due to the production of exometabolites by diatoms. The adsorbed amount of AuNPs decreased after several days of reaction, suggesting some AuNPs desorption. In the darkness, the adsorption and assimilation were stronger than under light. Overall, the behavior of positively charged AuNPs at the diatom–aqueous solution interface is similar to that of metal cations, but the affinity of aqueous AuNPs to cell exometabolites is higher, which leads to the stabilization of nanoparticles in solution in the

The impact of nitrogen contamination and river modification on a Mississippi River floodplain lake

Energy Technology Data Exchange (ETDEWEB)

Karthic, Indu [Box 1099 Environmental Sciences Program, Southern Illinois University, Edwardsville, IL 62026 (United States); Brugam, Richard B., E-mail: rbrugam@siue.edu [Box 1651 Department of Biological Sciences, Southern Illinois University, Edwardsville, IL 62026 (United States); Retzlaff, William [Box 1099 Environmental Sciences Program, Southern Illinois University, Edwardsville, IL 62026 (United States); Johnson, Kevin

2013-10-01

Anthropogenic nitrogen contamination has increased in ecosystems around the world (frequently termed the “nitrogen cascade”). Coke production for steel manufacturing is often overlooked as a source of nitrogen to natural ecosystems. We examined sediment cores from a Horseshoe Lake, a floodplain lake located just East of St. Louis Missouri (USA) to test whether a coking plant effluent could be traced using stable isotopes of nitrogen and diatom microfossils. The distribution of δ{sup 15}N values in surface sediment samples from the lake shows the highest values near the coking plant effluent. Stable isotopes of nitrogen from 4 sediment cores using a mixing model showed three sources of nitrogen since 1688 CE. The first source (active between 1688 and 1920 CE) had a calculated δ{sup 15}N value ranging between − 0.4 and 1.1‰ depending on the core. After 1920 a second source with a δ{sup 15}N ranging between 10.6 and 15.4‰ became active. The change in these sources coincides with the construction of a coking plant on the lake shore. A third source with a value approximately 7.0‰ was present at all times and represents background. The diatom microfossil assemblages present from 1688 CE to the late 1800s are dominated by the planktonic species Aulacoseira granulata and periphytic and benthic genera Gomphonema, Cocconeis, and Lyrella. After the late 1800s the diatom assemblages are dominated by Staurosira species indicating a shift of species from high flow riverine environments to epipelic species from a lake environment. Diatom microfossils seem to track the reduction in flooding due to leveeing of the floodplain and the isolation of the lake from the river. Our results show how stable isotopes of nitrogen can be used to track nitrogen inputs from industrial sources. Diatom changes corresponded with changes in connectivity between the Mississippi River and its floodplain. - Highlights: • Effluent from a steel plant increases fixed nitrogen input to a

The impact of nitrogen contamination and river modification on a Mississippi River floodplain lake

International Nuclear Information System (INIS)

Karthic, Indu; Brugam, Richard B.; Retzlaff, William; Johnson, Kevin

2013-01-01

Anthropogenic nitrogen contamination has increased in ecosystems around the world (frequently termed the “nitrogen cascade”). Coke production for steel manufacturing is often overlooked as a source of nitrogen to natural ecosystems. We examined sediment cores from a Horseshoe Lake, a floodplain lake located just East of St. Louis Missouri (USA) to test whether a coking plant effluent could be traced using stable isotopes of nitrogen and diatom microfossils. The distribution of δ 15 N values in surface sediment samples from the lake shows the highest values near the coking plant effluent. Stable isotopes of nitrogen from 4 sediment cores using a mixing model showed three sources of nitrogen since 1688 CE. The first source (active between 1688 and 1920 CE) had a calculated δ 15 N value ranging between − 0.4 and 1.1‰ depending on the core. After 1920 a second source with a δ 15 N ranging between 10.6 and 15.4‰ became active. The change in these sources coincides with the construction of a coking plant on the lake shore. A third source with a value approximately 7.0‰ was present at all times and represents background. The diatom microfossil assemblages present from 1688 CE to the late 1800s are dominated by the planktonic species Aulacoseira granulata and periphytic and benthic genera Gomphonema, Cocconeis, and Lyrella. After the late 1800s the diatom assemblages are dominated by Staurosira species indicating a shift of species from high flow riverine environments to epipelic species from a lake environment. Diatom microfossils seem to track the reduction in flooding due to leveeing of the floodplain and the isolation of the lake from the river. Our results show how stable isotopes of nitrogen can be used to track nitrogen inputs from industrial sources. Diatom changes corresponded with changes in connectivity between the Mississippi River and its floodplain. - Highlights: • Effluent from a steel plant increases fixed nitrogen input to a floodplain

Semi-automatic surface sediment sampling system - A prototype to be implemented in bivalve fishing surveys

Science.gov (United States)

Rufino, Marta M.; Baptista, Paulo; Pereira, Fábio; Gaspar, Miguel B.

2018-01-01

In the current work we propose a new method to sample surface sediment during bivalve fishing surveys. Fishing institutes all around the word carry out regular surveys with the aim of monitoring the stocks of commercial species. These surveys comprise often more than one hundred of sampling stations and cover large geographical areas. Although superficial sediment grain sizes are among the main drivers of benthic communities and provide crucial information for studies on coastal dynamics, overall there is a strong lack of this type of data, possibly, because traditional surface sediment sampling methods use grabs, that require considerable time and effort to be carried out on regular basis or on large areas. In face of these aspects, we developed an easy and un-expensive method to sample superficial sediments, during bivalve fisheries monitoring surveys, without increasing survey time or human resources. The method was successfully evaluated and validated during a typical bivalve survey carried out on the Northwest coast of Portugal, confirming that it had any interference with the survey objectives. Furthermore, the method was validated by collecting samples using a traditional Van Veen grabs (traditional method), which showed a similar grain size composition to the ones collected by the new method, on the same localities. We recommend that the procedure is implemented on regular bivalve fishing surveys, together with an image analysis system to analyse the collected samples. The new method will provide substantial quantity of data on surface sediment in coastal areas, using a non-expensive and efficient manner, with a high potential application in different fields of research.

Cenozoic planktonic marine diatom diversity and correlation to climate change

Science.gov (United States)

Lazarus, David; Barron, John; Renaudie, Johan; Diver, Patrick; Türke, Andreas

2014-01-01

Marine planktonic diatoms export carbon to the deep ocean, playing a key role in the global carbon cycle. Although commonly thought to have diversified over the Cenozoic as global oceans cooled, only two conflicting quantitative reconstructions exist, both from the Neptune deep-sea microfossil occurrences database. Total diversity shows Cenozoic increase but is sample size biased; conventional subsampling shows little net change. We calculate diversity from a separately compiled new diatom species range catalog, and recalculate Neptune subsampled-in-bin diversity using new methods to correct for increasing Cenozoic geographic endemism and decreasing Cenozoic evenness. We find coherent, substantial Cenozoic diversification in both datasets. Many living cold water species, including species important for export productivity, originate only in the latest Miocene or younger. We make a first quantitative comparison of diatom diversity to the global Cenozoic benthic ∂18O (climate) and carbon cycle records (∂13C, and 20-0 Ma pCO2). Warmer climates are strongly correlated with lower diatom diversity (raw: rho = .92, p2 were only moderately higher than today. Diversity is strongly correlated to both ∂13C and pCO2 over the last 15 my (for both: r>.9, detrended r>.6, all p<.001), but only weakly over the earlier Cenozoic, suggesting increasingly strong linkage of diatom and climate evolution in the Neogene. Our results suggest that many living marine planktonic diatom species may be at risk of extinction in future warm oceans, with an unknown but potentially substantial negative impact on the ocean biologic pump and oceanic carbon sequestration. We cannot however extrapolate our my-scale correlations with generic climate proxies to anthropogenic time-scales of warming without additional species-specific information on proximate ecologic controls.

Diatom-inferred hydrological changes and Holocene geomorphic transitioning of Africa's largest estuarine system, Lake St Lucia

Science.gov (United States)

Gomes, M.; Humphries, M. S.; Kirsten, K. L.; Green, A. N.; Finch, J. M.; de Lecea, A. M.

2017-06-01

The diverse lagoons and coastal lakes along the east coast of South Africa occupy incised valleys that were flooded during the rise and subsequent stabilisation of relative sea-level during the Holocene. Sedimentary deposits contained within these waterbodies provide an opportunity to investigate complex hydrological and sedimentological processes, and examine sea-level controls governing system geomorphic evolution. In this paper, we combine diatom and sulfur isotope analyses from two sediment cores extracted from the northern sub-basins of Lake St Lucia, a large shallow estuarine lake that is today largely isolated from direct ocean influence behind a Holocene-Pleistocene barrier complex. Analyses allow the reconstruction of hydrological changes associated with the geomorphic development of the system over the mid-to late Holocene. The sedimentary sequences indicate that St Lucia was a shallow, partially enclosed estuary/embayment dominated by strong tidal flows prior to ∼6200 cal. BP. Infilling was initiated when sea-level rise slowed and stabilised around present day levels, resulting in the accumulation of fine-grained sediment behind an emergent proto-barrier. Diatom assemblages, dominated by marine benthic and epiphytic species, reveal a system structured by marine water influx and characterised by marsh and tidal flat habitats until ∼4550 cal. BP. A shift in the biological community at ∼4550 cal. BP is linked to the development of a back-barrier water body that supported a brackish community. Marine planktonics and enrichments in δ34S suggest recurrent, large-scale barrier inundation events during this time, coincident with a mid-Holocene sea-level highstand. Periodic marine incursions associated with episodes of enhanced storminess and overwash remained prevalent until ∼1200 cal. BP, when further barrier construction ultimately isolated the northern basins from the ocean. This study provides the first reconstruction of the palaeohydrological

Relationships between diatoms and tidal environments in Oregon and Washington, USA

Science.gov (United States)

Sawai, Yuki; Horton, Benjamin P.; Kemp, Andrew C.; Hawkes, Andrea D.; Nagumo, Tamostsu; Nelson, Alan R.

2016-01-01

A new regional dataset comprising 425 intertidal diatom taxa from 175 samples from 11 ecologically diverse Oregon and Washington estuaries illustrates the importance of compiling a large modern dataset from a range of sites. Cluster analyses and detrended correspondence analysis of the diatom assemblages identify distinct vertical zones within supratidal, intertidal and subtidal environments at six of the 11 study sites, but the abundance of some of the most common species varies widely among and within sites. Canonical correspondence analysis of the regional dataset shows relationships between diatom species and tidal exposure, salinity and substratum (grain size and organic content). Correspondence analyses of local datasets show higher values of explained variation than the analysis of the combined regional dataset. Our results emphasize that studies of the autecology of diatom species require many samples from a range of modern environments to adequately characterize species–environment relationships.

The UV filtering potential of drop-casted layers of frustules of three diatom species

DEFF Research Database (Denmark)

Su, Yanyan; Lenau, Torben Anker; Gundersen, Emil

2018-01-01

Diatoms are in focus as biological materials for a range of photonic applications. Many of theseapplications would require embedding a multitude of diatoms in a matrix (e.g. paint, crème or lacquer); however, most studies on the photonic and spectral properties of diatoms frustules (silica walls)...

Metatranscriptomes reveal functional variation in diatom communities from the Antarctic Peninsula

KAUST Repository

Pearson, Gareth A

2015-04-14

Functional genomics of diatom-dominated communities fromthe Antarctic Peninsula was studied using comparative metatranscriptomics. Samples obtained from diatom-rich communities in the Bransfield Strait, the western Weddell Sea and sea ice in the Bellingshausen Sea/Wilkins Ice Shelf yielded more than 500K pyrosequencing reads that were combined to produce a global metatranscriptome assembly. Multi-gene phylogenies recovered three distinct communities, and diatom-assigned contigs further indicated little read-sharing between communities, validating an assembly-based annotation and analysis approach. Although functional analysis recovered a core of abundant shared annotations that were expressed across the three diatom communities, over 40% of annotations (but accounting for <10% of sequences) were community-specific. The two pelagic communities differed in their expression of N-metabolism and acquisition genes, which was almost absent in post-bloom conditions in the Weddell Sea community, while enrichment of transporters for ammonia and urea in Bransfield Strait diatoms suggests a physiological stance towards acquisition of reduced N-sources. The depletion of carbohydrate and energy metabolism pathways in sea ice relative to pelagic communities, together with increased light energy dissipation (via LHCSR proteins), photorespiration, and NO3 - uptake and utilization all pointed to irradiance stress and/or inorganic carbon limitation within sea ice. Ice-binding proteins and cold-shock transcription factors were also enriched in sea ice diatoms. Surprisingly, the abundance of gene transcripts for the translational machinery tracked decreasing environmental temperature across only a 4 °C range, possibly reflecting constraints on translational efficiency and protein production in cold environments. © 2015 International Society for Microbial Ecology All rights reserved.

Metatranscriptomes reveal functional variation in diatom communities from the Antarctic Peninsula

KAUST Repository

Pearson, Gareth A; Lago-Leston, Asuncion; Cá novas, Fernando; Cox, Cymon J; Verret, Frederic; Lasternas, Sebastian; Duarte, Carlos M.; Agusti, Susana; Serrã o, Ester A

2015-01-01

Functional genomics of diatom-dominated communities fromthe Antarctic Peninsula was studied using comparative metatranscriptomics. Samples obtained from diatom-rich communities in the Bransfield Strait, the western Weddell Sea and sea ice in the Bellingshausen Sea/Wilkins Ice Shelf yielded more than 500K pyrosequencing reads that were combined to produce a global metatranscriptome assembly. Multi-gene phylogenies recovered three distinct communities, and diatom-assigned contigs further indicated little read-sharing between communities, validating an assembly-based annotation and analysis approach. Although functional analysis recovered a core of abundant shared annotations that were expressed across the three diatom communities, over 40% of annotations (but accounting for <10% of sequences) were community-specific. The two pelagic communities differed in their expression of N-metabolism and acquisition genes, which was almost absent in post-bloom conditions in the Weddell Sea community, while enrichment of transporters for ammonia and urea in Bransfield Strait diatoms suggests a physiological stance towards acquisition of reduced N-sources. The depletion of carbohydrate and energy metabolism pathways in sea ice relative to pelagic communities, together with increased light energy dissipation (via LHCSR proteins), photorespiration, and NO3 - uptake and utilization all pointed to irradiance stress and/or inorganic carbon limitation within sea ice. Ice-binding proteins and cold-shock transcription factors were also enriched in sea ice diatoms. Surprisingly, the abundance of gene transcripts for the translational machinery tracked decreasing environmental temperature across only a 4 °C range, possibly reflecting constraints on translational efficiency and protein production in cold environments. © 2015 International Society for Microbial Ecology All rights reserved.

Fatty Alcohol Variations in Surface Sediments of Sungai Sepang Besar, Sepang, Selangor

International Nuclear Information System (INIS)

Masni Mohd Ali; Norfariza Humrawali; Ying, P.Q.; Mohd Talib Latif; Mohamad Pauzi Zakaria

2011-01-01

Composition of fatty alcohols from 19 surface sediment samples collected along Sungai Sepang Besar, Sepang, Selangor were determined. The sediments were extracted and analysed using the Gas Chromatography-Mass Spectrometry (GC-MS) technique. A total of 19 fatty alcohols from C 12 to C 30 including 4 branched compounds were identified with concentrations in the range 0.02 μg/ g - 9.01 μg/ g dry weight. C 26 fatty alcohols dominated most sampling stations with concentrations ranging from 0.29 to 5.43 μg/ g dry weight and constituted 15.5 % of total fatty alcohols. According to individual compounds of fatty alcohols and the [Σ(C 12 - C 20 )/ Σ(C 22 - C 30 )] ratio, Sungai Sepang Besar has a high composition of short-chain fatty alcohols (C 12 - C 20 ) which mainly originate from marine organisms. However, the Alcohol Sources Index (ASI) showed that terrestrial derived fatty alcohols dominated the area due to high concentration of C 26 compounds in most sampling stations. The value of (odd chain length)/ (even chain length) ratios were high for almost all the sampling stations due to high bacterial activities. It can be concluded that the surface sediments of Sungai Sepang Besar contained organic materials from marine, terrestrial and bacterial sources. (author)

Interference patterns and extinction ratio of the diatom Coscinodiscus granii

DEFF Research Database (Denmark)

Maibohm, Christian; Friis, Søren Michael Mørk; Ellegaard, M.

2015-01-01

We report experimental and theoretical verification of the nature and position of multiple interference points of visible light transmitted through the valve of the centric diatom species Coscinodiscus granii. Furthermore, by coupling the transmitted light into an optical fiber and moving...... the diatom valve between constructive and destructive interference points, an extinction ratio of 20 dB is shown...

Quantitative radiolarian assemblages in surface sediments from the central Indian Basin and their paleomonsoonal significance

Digital Repository Service at National Institute of Oceanography (India)

Gupta, S.M.

The percentage data of 47 radiolarian coarser taxonomic groups in the surface sediments from the central Indian Basin was subjected to cluster and factor analyses. The R-mode cluster analysis resulted in 3 dominant clusters which represent surface...

Radioactivity of some alpha, beta and gamma emitting radionuclides in surface marine sediments of different bays in Algeria

International Nuclear Information System (INIS)

Noureddine, A.; Baggoura, B.

1999-01-01

Samples of surface (0-15) cm marine sediments of different grain sizes, namely sand, muddy and fine sand, were collected in the western, central and east coast of Algeria, to measure concentrations of natural and artificial radioactivity. The aim of this study is to detect any radioactive contamination, its origin and also to determine the uptake of radioactivity by marine surface sediments

Fouling diatom community with reference to substratum variability in tropical marine environment

Digital Repository Service at National Institute of Oceanography (India)

Mitbavkar, S.; Desai, D.V.; Khandeparker, L.; Anil, A.C.; Wagh, A.B.

form encountered. The paper deals with the qualitative and quantitative aspects of diatom colonization, their community structure, and correlation between the prevailing diatom population in the environment and that in the fouling community...

Comparison of phosphorus fraction distribution and influencing factors of suspended and surface sediments in the Tiaoxi watershed, China.

Science.gov (United States)

Ye, Hongmeng; Yuan, Xuyin; Han, Lei; Yin, Heng; Jin, Jing

2017-05-01

Suspended and surface sediments from the Tiaoxi watershed, fed by the Xitiaoxi and Dongtiaoxi rivers, were analyzed for total phosphorus (TP) and the inorganic P fractions of loosely adsorbed P that were extractable with NH 4 Cl (NH 4 Cl-P), reductant P (BD-P), metal oxide-bound P extractable with NaOH (NaOH-P), and calcium-bound, HCl-extractable P (HCl-P), while other physicochemical compositions were also determined. The spatial variations of P fractions in these sediments were investigated, and the major factors influencing the various fractions were explored by multivariate statistics. Compared to surface sediments, suspended sediments contained considerably higher concentrations of total nitrogen, TP, organic matter, Al, Fe, Mn and biologically available P (BAP, given as NH 4 Cl-P, BD-P and NaOH-P combined) and lower concentrations of Si, Ca and HCl-P in the studied catchments. Dongtiaoxi sediments had higher TP, inorganic phosphorus and HCl-P concentrations and a lower BAP content compared with Xitiaoxi sediments, trends that were associated with local geological backgrounds, landscapes and anthropogenic characteristics. The results of principal component analysis showed different effects of sediment properties on P fraction distributions for Xitiaoxi and Dongtiaoxi sediments. The sediment components and structure exert a strong influence on BAP in Xitiaoxi sediments, in contrast to Dongtiaoxi sediments, where P fractions are mainly affected by urbanization and other anthropogenic activities such as shipping.

Low-Molecular-Weight Metabolites from Diatoms: Structures, Biological Roles and Biosynthesis

Directory of Open Access Journals (Sweden)

Valentin Stonik

2015-06-01

Full Text Available Diatoms are abundant and important biological components of the marine environment that biosynthesize diverse natural products. These microalgae are rich in various lipids, carotenoids, sterols and isoprenoids, some of them containing toxins and other metabolites. Several groups of diatom natural products have attracted great interest due to their potential practical application as energy sources (biofuel, valuable food constituents, and prospective materials for nanotechnology. In addition, hydrocarbons, which are used in climate reconstruction, polyamines which participate in biomineralization, new apoptotic agents against tumor cells, attractants and deterrents that regulate the biochemical communications between marine species in seawaters have also been isolated from diatoms. However, chemical studies on these microalgae are complicated by difficulties, connected with obtaining their biomass, and the influence of nutrients and contaminators in their environment as well as by seasonal and climatic factors on the biosynthesis of the corresponding natural products. Overall, the number of chemically studied diatoms is lower than that of other algae, but further studies, particularly those connected with improvements in the isolation and structure elucidation technique as well as the genomics of diatoms, promise both to increase the number of studied species with isolated biologically active natural products and to provide a clearer perception of their biosynthesis.

Formation of Calcium Silicates during Ignition of Marine Sediments and its Implication on the State of Silica on the Sea Floor

International Nuclear Information System (INIS)

Duursma, E.K.; Bosch, C.J.; Eisma, D.

1976-01-01

Anomalies in the formation of calcium silicates in various marine sediment samples were observed on ignition at 800°C. The hypothesis is put forward that silica, originating from the land and from marine diatoms, undergoes a slow hydrolysis in the seabed and becomes more reactive. (author)

Seasonal and daily fluctuation of diatoms during spring tide periods in Kerkennah Islands

Directory of Open Access Journals (Sweden)

Mounir Ben brahim

2015-06-01

Full Text Available Objective: To study seasonal and the daily distribution of diatoms in the three tidal periods (flood, slack and ebb period during the spring tide. Methods: Water samples were taken and environmental variables were measured three times in each tidal period during 10 days of spring tide. Sampling was done in 2007 in Cercina station located in the western coast of Kerkennah (34°41'27'' N; 11°07'45'' E (Southern Tunisia. Results: Nutrients showed significant variation between seasons, increasing in spring and decreasing noticeably in autumn and winter. About 36 diatom species were found. Results revealed a remarkable abundance increase in spring and summer. Irregular differences in diatom abundances were revealed over the tidal periods, with the highest rates being detected during the flood and the ebb period, while the abundance rate was lowest during the slack period. This could presumably be attributed to the increase of nutrient supply of suspended particulate matter during water motion. The results revealed a correlation between diatom abundance and temperature, NO2 - , NO3 - , Si(OH4 and PO4 3 . Temperature seemed to be the most important factors which may influence the distribution and diatom abundance. Conclusions: Tide has various effects on the nutrients status and diatoms community (in terms of species composition, succession and abundance between different tidal periods. Fluctuation of diatoms was correlated with changes in the circulation of water bodies and changes in nutrient regime.

Distribution of polycyclic aromatic hydrocarbons (PAHs) in surface sediments of Pulau Tinggi, Johor

Science.gov (United States)

Razak, Ezzati Sulhi Abdul; Halim, Izzyan Syazwani Abdul; Ali, Masni Mohd

2016-11-01

Surface sediments samples were collected at 11 stations around the Pulau Tinggi, Johor in September 2015. A total of 15 PAHs were determined and quantified by gas chromatography coupled with mass spectrometry (GC-MS). The total PAH concentrations of surface sediments from Pulau Tinggi ranged from 39.61 ng/g to 149.2 ng/g and they were classified as being in low to moderate pollution range. Individual PAH analysis showed that two and three rings PAHs were the most frequently detected isomers and accounted for 22 - 46% of the total PAH concentrations. The sources of PAHs were evaluated by employing diagnostic ratiosof specific PAH compounds.PAH ratios analysis showed a prevalence of pyrogenic PAH origin at most of the stations with exception of only a few stations.

Heavy metals in surface sediments of the Jialu River, China: their relations to environmental factors.

Science.gov (United States)

Fu, Jie; Zhao, Changpo; Luo, Yupeng; Liu, Chunsheng; Kyzas, George Z; Luo, Yin; Zhao, Dongye; An, Shuqing; Zhu, Hailiang

2014-04-15

This work investigated heavy metal pollution in surface sediments of the Jialu River, China. Sediment samples were collected at 19 sites along the river in connection with field surveys and the total concentrations were determined using atomic fluorescence spectrometer and inductively coupled plasma optical emission spectrometer. Sediment samples with higher metal concentrations were collected from the upper reach of the river, while sediments in the middle and lower reaches had relatively lower metal concentrations. Multivariate techniques including Pearson correlation, hierarchical cluster and principal components analysis were used to evaluate the metal sources. The ecological risk associated with the heavy metals in sediments was rated as moderate based on the assessments using methods of consensus-based Sediment Quality Guidelines, Potential Ecological Risk Index and Geo-accumulation Index. The relations between heavy metals and various environmental factors (i.e., chemical properties of sediments, water quality indices and aquatic organism indices) were also studied. Nitrate nitrogen, total nitrogen, and total polycyclic aromatic hydrocarbons concentrations in sediments showed a co-release behavior with heavy metals. Ammonia nitrogen, total nitrogen, orthophosphate, total phosphate and permanganate index in water were found to be related to metal sedimentation. Heavy metals in sediments posed a potential impact on the benthos community. Copyright © 2014 Elsevier B.V. All rights reserved.

Tracing the origin of Pb using stable Pb isotopes in surface sediments along the Korean Yellow Sea coast

Science.gov (United States)

Park, Jong-Kyu; Choi, Man-Sik; Song, Yunho; Lim, Dhong-Il

2017-06-01

To investigate the factors controlling lead (Pb) concentration and identify the sources of Pb in Yellow Sea sediments along the Korean coast, the concentration of Pb and Pb isotopes in 87 surface and 6 core sediment samples were analyzed. The 1 M HCl leached Pb concentrations had a similar geographic distribution to those of fine-grained sediments, while the distribution of residual Pb concentrations resembled that of coarse-grained sediments. Leached Pb was presumed to be associated with manganese (Mn) oxide and iron (Fe) oxy/hydroxide, while residual Pb was associated with potassium (K)-feldspar, based on good linear relationships between the leached Pb and the Fe/Mn concentrations, and the residual Pb and K concentrations. Based on a ratio-ratio plot with three isotopes (207Pb/206Pb and 208Pb/206Pb) and the geographic location of each sediment, sediments were categorized into two groups of samples as group1 and group2. Group 1 sediments, which were distributed in Gyeonggi Bay and offshore (north of 36.5°N), were determined to be a mixture of anthropogenic and natural Pb originating from the Han River, based on a 208Pb/206Pb against a Cs/Pbleached mixing plot of core and surface sediments. Group 2 sediments, which were distributed in the south of 36.5°N, also showed a two endmembers mixing relationship between materials from the Geum River and offshore materials, which had very different Pb concentrations and isotope ratios. Based on the isotopes and their concentrations in core and surface sediments, this mixing relationship was interpreted as materials from two geographically different origins being mixed, rather than anthropogenic or natural mixing of materials with the same origin. Therefore, the relative percentage of materials supplied from the Geum River was calculated using a two endmembers mixing model and estimated to be as much as about 50% at 35°N. The spatial distribution of materials derived from the Geum River represented that of fine

Characterising weak layers that accommodate submarine landslides on the Northwest African continental slope

Science.gov (United States)

Urlaub, M.; Krastel, S.; Geersen, J.; Schwenk, T.

2017-12-01

Numerous studies invoke weak layers to explain the occurrence of large submarine landslides (>100 km³), in particular those on very gentle slopes (translational, such that failure takes place along bedding-parallel surfaces at different stratigraphic depths. This suggests that failure occurs along weak layers, which are deposited repeatedly over time. Using high resolution seismic reflection data we trace several failure surfaces of the Cap Blanc Slide complex offshore Northwest Africa to ODP-Site 658. Core-seismic integration shows that the failure surfaces coincide with diatom oozes that are topped by clay. Along Northwest Africa diatom-rich sediments are typically deposited at the end of glacial periods. In the seismic data these oozes show up as distinct high amplitude reflectors due to their characteristic low densities. Similar high-amplitude reflectors embedded into low-reflective seismic units are commonly observed in shallow sediments (<100 m below seafloor) along the entire Northwest African continental slope. The failure surfaces of at least three large landslides coincide with such reflectors. As the most recent Pleistocene glacial periods likely influenced sediment deposition along the entire Northwest African margin in a similar manner we hypothesize that diatom oozes play a critical role for the generation of submarine landslides off Northwest Africa as well as globally within subtropical regions. An initiative to drill the Northwest African continental slope with IODP is ongoing, within which this hypothesis shall be tested.

The effect of grain size and surface area on organic matter, lignin and carbohydrate concentration, and molecular compositions in Peru Margin sediments

Science.gov (United States)

Bergamaschi, Brian A.; Tsamakis, Elizabeth; Keil, Richard G.; Eglinton, Timothy I.; Montluçon, Daniel B.; Hedges, John I.

1997-03-01

A C-rich sediment sample from the Peru Margin was sorted into nine hydrodynamically-determined grain size fractions to explore the effect of grain size distribution and sediment surface area on organic matter content and composition. The neutral monomeric carbohydrate composition, lignin oxidation product yields, total organic carbon, and total nitrogen contents were determined independently for each size fraction, in addition to sediment surface area and abundance of biogenic opal. The percent organic carbon and percent total nitrogen were strongly related to surface area in these sediments. In turn, the distribution of surface area closely followed mass distribution among the textural size classes, suggesting hydrodynamic controls on grain size also control organic carbon content. Nevertheless, organic compositional distinctions were observed between textural size classes. Total neutral carbohydrate yields in the Peru Margin sediments were found to closely parallel trends in total organic carbon, increasing in abundance among grain size fractions in proportion to sediment surface area. Coincident with the increases in absolute abundance, rhamnose and mannose increased as a fraction of the total carbohydrate yield in concert with surface area, indicating these monomers were preferentially represented in carbohydrates associated with surfaces. Lignin oxidation product yields varied with surface area when normalized to organic carbon, suggesting that the terrestrially-derived component may be diluted by sorption of marine derived material. Lignin-based parameters suggest a separate source for terrestrially derived material associated with sand-size material as opposed to that associated with silts and clays.

Neutron activation analysis to the profile surface sediments from several sites on the Havana Bay

International Nuclear Information System (INIS)

Diaz Riso, O.; Gelen, A.; Lopez, N.; Gonzalez, H.; Manso, M.V.; Graciano, A.M.; Nogueira, C.A.; Beltran, J.; Soto, J.

2003-01-01

Instrumental neutron activation analysis (INAA) technique was employed to analyze the surface sediments from several sites on the Havana Bay, Cuba. Measurements of heavy and trace elements in the sediments are reported. The results show that the concentration of the elements is site dependent. The data suggest that an anthropogenic input into the bay from domestic sewage and industries occurred

Innovative eco-friendly bio- solvent for combating sea surface and sedimented oil pollution

Science.gov (United States)

Theodorou, Paraskevas

2017-04-01

The combating of oil spill at sea surface by chemical dispersants accelerates the evaporation and disperse the oil into the water column, where it is broken down by natural processes and/or is sedimented at the sea bottom, especially at near coastal shallow areas, ports and marinas. The usual methodology for cleaning the sedimented oil from the sea bottom is mainly carried out via excavation and dumping of the polluted sediment into deeper sea areas, where the contamination is transferred from one area to another. The eco-friendly bio-solvent MSL Aqua 250 is an innovative new solution based mainly on natural constituents. The action mechanism and the effectiveness of this eco-friendly solvent is based on the high surface tension process. Organic compounds, including hydrocarbons upon coming in contact with MSL Aqua 250 solvent generate a significant surface tension reaction, which is able to alter the organic compounds to liquid form and then to drastically evaporate it. The use of MSL Aqua 250 solvent, both at sea surface and at the bottom, has the following advantages compared to the dispersants: • Efficient solution without transferring the pollution from sea surface to the water column and to the bottom or disturbing the Aquatic Eco System. • Non-Toxic. • Environmentally friendly with a restoration of marine life in the Eco System. • Cost effective. The MSL Aqua 250 solvent has been tested in cooperation with the Cyprus Department of Fisheries and Marine Research and the Technological University of Cyprus and used during the years 2015 and 2016 in marinas and fishing shelters in Cyprus faced oil pollution, with high concentration in the sea water and at the sea bottom of chemical parameters (BOD5, COD, FOG, TKN, TP, TPH), with excellent results.

Speciation and spatial distribution of solid-phase iron in surface sediments of the East China Sea continental shelf

International Nuclear Information System (INIS)

Zhu, Mao-Xu; Hao, Xiao-Chen; Shi, Xiao-Ning; Yang, Gui-Peng; Li, Tie

2012-01-01

Speciation and reactivity characterization of solid-phase Fe in marine sediments are of significance to understanding its heterogeneous mineralogy and crystallinity, the diagenetic cycling of Fe and its regulating roles on many other elements in sediments. In this study, a combination of sequential and single-step extractions was used for the determination of seven Fe pools in surface sediments of the East China Sea (ECS) continental shelf: (1) carbonate associated Fe (Fe(II) carb ) plus acid volatile sulfide-Fe (Fe(II) AVS ), (2) easily reducible amorphous/poorly crystalline Fe oxides (Fe ox1 ), (3) reducible crystalline Fe oxides (Fe ox2 ), (4) magnetite (Fe mag ), (5) poorly reactive sheet silicate Fe (Fe PRS ), (6) pyrite-Fe (Fe py ), and (7) unreactive silicate Fe (Fe U ). Total Fe (Fe T ) in the sediments is largely determined by terrestrial aluminosilicate particles as indicated by a great similarity of the Fe T with that of the Yangtze River and global riverine particulates. The size of Fe PRS is found to be the largest pool, followed by Fe U , Fe ox2 , Fe mag , Fe(II) AVS+carb , Fe ox1 and Fe py . The large Fe PRS may result from neoformation of Fe-rich clay minerals via reverse weathering and subsequent ageing. The small sizes of Fe(II) AVS+carb and Fe py pools is believed to be the result of low SO 4 reduction due to generally low labile organic matter together with the oxic/suboxic, dynamic environments of the surface sediments. The occurrence of Fe ox1 , Fe ox2 and Fe PRS in the sediments is closely associated with the clay fraction as indicated by a high spatial correlation between the former and the latter. Highly reactive Fe(Fe HR ) in the sediments is comparable to that in global marine sediments, but apparently lower than in the Yangtze River and global riverine particulates due probably to sequestration in the Yangtze Estuary. The ratios of Fe HR /Fe T , Fe PR /Fe T and Fe U /Fe T in the ECS surface sediments consistently show more similarity to

A 900-Year Diatom and Chrysophyte Record of Spring Mixing and Summer Stratification From Varved Lake Mina, West-Central Minnesota, USA

Science.gov (United States)

St. Jacques, J.; Cumming, B. F.; Smol, J. P.

2009-05-01

A high-resolution, independent pollen-inferred paleoclimate record and direct algal seasonality data from the actual time of sediment deposition are used to interpret the high-resolution diatom and chrysophyte record of varved Lake Mina, west-central Minnesota, USA during AD 1116-2002. This direct algal seasonality information was obtained by a new technique of splitting varves into constituent winter-spring and summer lamina, and separately analyzing the siliceous algae in each layer. Analyses of integrated, continuous four-year diatom and chrysophyte samples from a sedimentary sequence show that the time period AD 1116-1478 (i.e. the Atlantic- centered Medieval Climate Anomaly (MCA)) was characterized by periods of vigorous and prolonged spring mixing, suggesting that ice-out occurred early. However, the warm summer temperatures in the MCA, particularly in a massive drought spanning AD 1300-1400, frequently caused the lake to stratify strongly, leading to nutrient depletion. During AD 1478-1870 (i.e. the Atlantic-centered Little Ice Age (LIA)), Lake Mina was characterized by weak spring circulation and increasing nutrient depletion, suggesting late ice-out conditions. Strong summer stratification and/or nutrient depletion in both time periods is shown by the occurrence of the nutrient-poor oligotrophic taxon Cyclotella pseudostelligera. The diatom and chrysophyte assemblages of the period of Euro-American settlement AD 1870-2002 show higher nutrient availability and increased spring mixing intensity, due to forest clearance and increasingly earlier ice-out (documented in regional historical records).

THE RESPONSE OF THE PERIPHYTIC DIATOM COMMUNITY TO ACID MINE DRAINAGE POLLUTION

Directory of Open Access Journals (Sweden)

Andreea Ciorba

2004-01-01

Full Text Available This paper proposes to relate the principal characteristics of diatom community (species richness, biodiversity, community biomass, diatom indices to the stress induced by acidification and high levels of metal. The study was done in a mine drainage affected area in Galicia (NW Spain by comparing periphytic diatom communities from polluted streams to ones in supposedly clean waters. The change in the dominant species was the clearest response to AMD pollution while species richness and diversity were sensitive only to high levels of pollution.

Contaminants in surface water and sediments near the Tynagh silver mine site, County Galway, Ireland

Energy Technology Data Exchange (ETDEWEB)

O' Neill, A. [School of Planning, Architecture and Civil Engineering, Queen' s University of Belfast, Belfast, Northern Ireland (United Kingdom); Phillips, D.H., E-mail: d.phillips@qub.ac.uk [School of Planning, Architecture and Civil Engineering, Queen' s University of Belfast, Belfast, Northern Ireland (United Kingdom); Bowen, J. [School of Planning, Architecture and Civil Engineering, Queen' s University of Belfast, Belfast, Northern Ireland (United Kingdom); Sen Gupta, B. [School of the Built Environment, Hariot-Watt University, Edinburgh, Scotland (United Kingdom)

2015-04-15

A former silver mine in Tynagh, Co. Galway, Ireland is one of the most contaminated mine sites in Europe with maximum concentrations of Zn, As, Pb, Mn, Ni, Cu, and Cd far exceeding guideline values for water and sediment. The aims of this research were to 1) further assess the contamination, particularly metals, in surface water and sediment around the site, and 2) determine if the contamination has increased 10 years after the Environmental Protection Agency Ireland (EPAI) identified off-site contamination. Site pH is alkaline to neutral because CaCO{sub 3}-rich sediment and rock material buffer the exposed acid generating sulphide-rich ore. When this study was compared to the previous EPAI study conducted 10 years earlier, it appeared that further weathering of exposed surface sediment had increased concentrations of As and other potentially toxic elements. Water samples from the tailings ponds and adjacent Barnacullia Stream had concentrations of Al, Cd, Mn, Zn and Pb above guideline values. Lead and Zn concentrations from the tailings pond sediment were 16 and 5 times higher, respectively, than concentrations reported 10 years earlier. Pb and Zn levels in most sediment samples exceeded the Expert Group (EGS) guidelines of 1000 and 5000 mg/kg, respectively. Arsenic concentrations were as high as 6238 mg/kg in the tailings ponds sediment, which is 62 and 862 times greater than the EGS and Canadian Soil Quality Guidelines (CSQG), respectively. Cadmium, Cu, Fe, Mn, Pb and Zn concentrations in water and sediment were above guideline values downstream of the site. Additionally, Fe, Mn and organic matter (OM) were strongly correlated and correlated to Zn, Pb, As, Cd, Cu and Ni in stream sediment. Therefore, the nearby Barnacullia Stream is also a significant pathway for contaminant transport to downstream areas. Further rehabilitation of the site may decrease the contamination around the area. - Highlights: • Tynagh silver mine in Co. Galway, Ireland is a source of

Growth inhibition of periphytic diatoms by methanol extracts of sponges and holothurians

Digital Repository Service at National Institute of Oceanography (India)

Mokashe, S.S.; Garg, A; Anil, A; Wagh, A

Crude methanol extracts of a holothurian Holothuria leucospilota, and two sponges Craniella sp. and Ircinia ramosa were tested for their inhibitory effects on the growth of two marine diatoms, Navicula subinflata and N. crucicula, by diatom plating...

Uranium series disequilibrium in the coastal surface sediments and sea water of the Arabian sea

Digital Repository Service at National Institute of Oceanography (India)

Joshi, L.U.; Zingde, M.D.

activity ratios in leachates, and residues after removal of surface organic matter from the sediment particles by treatment with hydrogen peroxide and 0.05M HCl, revealed disequilibrium between sup(238) U and sup(234) U only in the surface organic matter...

Aerobic biodegradation potential of endocrine-disrupting chemicals in surface-water sediment at Rocky Mountain National Park, USA.

Science.gov (United States)

Bradley, Paul M; Battaglin, William A; Iwanowicz, Luke R; Clark, Jimmy M; Journey, Celeste A

2016-05-01

Endocrine-disrupting chemicals (EDCs) in surface water and bed sediment threaten the structure and function of aquatic ecosystems. In natural, remote, and protected surface-water environments where contaminant releases are sporadic, contaminant biodegradation is a fundamental driver of exposure concentration, timing, duration, and, thus, EDC ecological risk. Anthropogenic contaminants, including known and suspected EDCs, were detected in surface water and sediment collected from 2 streams and 2 lakes in Rocky Mountain National Park (Colorado, USA). The potential for aerobic EDC biodegradation was assessed in collected sediments using 6 (14) C-radiolabeled model compounds. Aerobic microbial mineralization of natural (estrone and 17β-estradiol) and synthetic (17α-ethinylestradiol) estrogen was significant at all sites. Bed sediment microbial communities in Rocky Mountain National Park also effectively degraded the xenoestrogens bisphenol-A and 4-nonylphenol. The same sediment samples exhibited little potential for aerobic biodegradation of triclocarban, however, illustrating the need to assess a wider range of contaminant compounds. The present study's results support recent concerns over the widespread environmental occurrence of carbanalide antibacterials, like triclocarban and triclosan, and suggest that backcountry use of products containing these compounds should be discouraged. Published 2015 Wiley Periodicals Inc. on behalf of SETAC. This article is a US Government work and, as such, is in the public domain in the United States of America.

Chemical and physical properties of the surface sea sediments at the Olkiluoto offshore, South-Western Finland

International Nuclear Information System (INIS)

Lahdenperae, A.-M.; Keskinen, A.

2011-11-01

Due to land uplift, the present sea sediments near Olkiluoto will be future land areas, and thus important for the transport of possible releases from nuclear waste repositories at the site. Coastal areas are the transition zones between land and sea, and also potential sites for deep groundwater discharge. The geochemical properties of the surface sediments at the Olkiluoto sea area are summarised in this report. Thirteen sediment samples were cored during the R/V Geomari cruise in autumn 2008. In addition, surface sediment samples from six transects, altogether 57 cores, were taken near the Olkiluoto shoreline by diving in the summer of 2008. The analysis procedure included pH, moisture, dry matter, ash and LOI contents, grain size distribution, carbon and nitrogen analyses and the total concentrations of thirtythree elements. The lateral and vertical distribution of element concentrations, especially heavy metals, is caused by variations in transport and sedimentation patterns of particulate matter, in the occurrence of migration processes and bonding types. The distribution pattern in most of the elements is strongly linked to that of organic matter, carbon and fine-grained material contents. The sediments are strongly enriched by some of the studied elements possibly due to anthropogenic load, while others are only moderately or slightly present. However, the source of different natural and anthropogenic loads is not easy to point out. (orig.)

Micro contaminants in surface sediments and macrobenthic invertebrates of the North Sea

NARCIS (Netherlands)

Everaarts, J.M.; Fischer, C.V.

1989-01-01

Trace metal concentrations (copper, zinc, cadmium and lead) were measured in the silt fraction (grainsize < 63 µm) of surface sediment of the North Sea. The concentrations varied in different areas of the Dutch continental shelf of the North Sea. The trace metal concentrations were highly related

Aldehyde suppression of copepod recruitment in blooms of a ubiquitous planktonic diatom

Science.gov (United States)

Ianora, Adrianna; Miralto, Antonio; Poulet, Serge A.; Carotenuto, Ylenia; Buttino, Isabella; Romano, Giovanna; Casotti, Raffaella; Pohnert, Georg; Wichard, Thomas; Colucci-D'Amato, Luca; Terrazzano, Giuseppe; Smetacek, Victor

2004-05-01

The growth cycle in nutrient-rich, aquatic environments starts with a diatom bloom that ends in mass sinking of ungrazed cells and phytodetritus. The low grazing pressure on these blooms has been attributed to the inability of overwintering copepod populations to track them temporally. We tested an alternative explanation: that dominant diatom species impair the reproductive success of their grazers. We compared larval development of a common overwintering copepod fed on a ubiquitous, early-blooming diatom species with its development when fed on a typical post-bloom dinoflagellate. Development was arrested in all larvae in which both mothers and their larvae were fed the diatom diet. Mortality remained high even if larvae were switched to the dinoflagellate diet. Aldehydes, cleaved from a fatty acid precursor by enzymes activated within seconds after crushing of the cell, elicit the teratogenic effect. This insidious mechanism, which does not deter the herbivore from feeding but impairs its recruitment, will restrain the cohort size of the next generation of early-rising overwinterers. Such a transgenerational plant-herbivore interaction could explain the recurringly inefficient use of a predictable, potentially valuable food resource-the spring diatom bloom-by marine zooplankton.

Hydrothermal alteration of sediments associated with surface emissions from the Cerro Prieto geothermal field

Energy Technology Data Exchange (ETDEWEB)

Valette-Silver, J.N.; Esquer P., I.; Elders, W.A.; Collier, P.C.; Hoagland, J.R.

1981-01-01

A study of the mineralogical changes associated with these hydrothermal vents was initiated with the aim of developing possible exploration tools for geothermal resources. The Cerro Prieto reservoir has already been explored by extensive deep drilling so that relationships between surface manifestations and deeper hydrothermal processes could be established directly. Approximately 120 samples of surface sediments were collected both inside and outside of the vents. The mineralogy of the altered sediments studied appears to be controlled by the type of emission. A comparison between the changes in mineralogy due to low temperature hydrothermal activity in the reservoir, seen in samples from boreholes, and mineralogical changes in the surface emission samples shows similar general trends below 180 C: increase of quartz, feldspar and illite, with subsequent disappearance of kaolinite, montmorillonite, calcite and dolomite. These mineral assemblages seem to be characteristic products of the discharge from high intensity geothermal fields.

Climate, catchment runoff and limnological drivers of carbon and oxygen isotope composition of diatom frustules from the central andean altiplano during the Lateglacial and Early Holocene

OpenAIRE

Hernández, Armand; Bao, Roberto; Giralt, Santiago; Sáez, Alberto; Leng, Melanie J.; Barker, Philips A.; Kendrick, C.P.; Sloane, Hilary J.

2013-01-01

Diatom-based carbon and oxygen isotope analyses (δ13Cdiatom and δ18Odiatom) were performed on diatomrich laminated sediments of Lake Chungará (Andean Altiplano, northern Chile) deposited during the Lateglacial and Early Holocene (12,400e8300 cal years BP) to reconstruct climate change and environmental response across this major climate transition. The δ13Cdiatom data show both centennial-tomillennial scale changes related to fluctuations in lake productivity and CO2 concentration in the lake...

Distribution and characteristics of organic micropollutants in surface sediments from Bohai Sea

International Nuclear Information System (INIS)

Liu Wenxin; Chen Jianglin; Lin Xiumei; Tao Shu

2006-01-01

Spatial distribution and compositional characteristics of PAHs, DDTs and PCBs in surface sediments from Bohai Sea were investigated. Proportion of LMW PAHs at Jinzhou Bay was significant, due probably to the petrogenic sources from neighboring oil wells and plants, while HMW PAHs were dominant in the other sea areas, inferred pyrogenic origins mainly from coal or petroleum combustion. The average ERL quotient for the PAH species in Qinhuangdao and Liaodong Bay indicated relatively stronger potential ecological risk. The concentration ratios of DDT to metabolites (DDD + DDE) exceeded 1.0 in the coastal areas of Qinhuangdao, Liaodong Bay and Bohai Bay, demonstrated some recent inputs of DDT nearby, and DDD as the major degradation product. The concentrations of PCBs were generally low, however, the contents of DDTs were greater than the ERL guidelines in the coastal areas of Qinhuangdao, Liaodong Bay and Bohai Bay, and suggested the potential ecological risk. - The recent inputs of DDT in surface sediments at some sites of Bohai Sea indicated potential ecological risk

Screening of multiple hormonal activities in surface water and sediment from the Pearl River system, South China, using effect-directed in vitro bioassays.