WorldWideScience

Sample records for subsurface pathogen treatment

  1. Valuing the subsurface pathogen treatment barrier in water recycling via aquifers for drinking supplies

    CSIR Research Space (South Africa)

    Page, D

    2010-03-01

    Full Text Available . Parafield and Atlantis reach the 340 value of 1 ? 10-6 DALYs within the actual ranges of the residence times for the case 341 study sites. Tula Valley risks remain higher than other sites. 342 I think this is the most important section and we need... pathogens during MAR the potential presence of 380 these pathogens and their numbers need to be determined. The major source of all 381 enteric pathogens is faecal contamination, particularly from human faecal material. 382 The largest number of enteric...

  2. Sorption of pathogens during sub-surface drip irrigation with wastewater

    Science.gov (United States)

    Levi, Laillach; Gillerman Gillerman, Leonid; Kalavrouziotis, Ioannis; Oron, Gideon

    2017-04-01

    Water scarcity continues to be one of the major threats to human survival in many regions worldwide, such as Africa, the Mediterranean Basin, the State of California in the US. Due to a mixture of factors such as population growth, reduction in water resources availability and higher demand for high quality waters in these regions these countries face water shortage issues that stem from overuse, extensive extraction of groundwater, and frequent drought events. In addition, there are increases in environmental and health awareness that have led to intensive efforts in the treatment and reuse of nonconventional water sources, mainly wastewater and greywater. One approach to water shortages issues is to use wastewater as means to close the gap between supply and demand. However, the need to treat wastewater and to disinfect it forces additional economic burden on the users, primarily for agricultural irrigation. A possible solution might be to use the soil as a sorbent for the contained pathogens. Under sub-surface drip irrigation, not allowing the wastewater to reach the soil surface, the pathogens will remain in the soil. It was as well shown in field experiments that the opening size of roots will not allow pathogens to penetrate into the plants. Additional advantages such as water saving, protection of the pipe systems and others are also important. Field experiments in commercial fields just emphasize the main advantages of sub-surface drip irrigation.

  3. Treatment of swine wastewater with subsurface-flow constructed ...

    African Journals Online (AJOL)

    This study evaluates the capability of horizontal subsurface-flow constructed wetlands (SSF CWs) for treating pretreated swine wastewater as a function of contact time (CT) and type of macrophyte under the local conditions of Yucatán, Mexico. Experiments were conducted from July 2004 to November 2005 on a ...

  4. Key design factors affecting microbial community composition and pathogenic organism removal in horizontal subsurface flow constructed wetlands.

    Science.gov (United States)

    Morató, Jordi; Codony, Francesc; Sánchez, Olga; Pérez, Leonardo Martín; García, Joan; Mas, Jordi

    2014-05-15

    Constructed wetlands constitute an interesting option for wastewater reuse since high concentrations of contaminants and pathogenic microorganisms can be removed with these natural treatment systems. In this work, the role of key design factors which could affect microbial removal and wetland performance, such as granular media, water depth and season effect was evaluated in a pilot system consisting of eight parallel horizontal subsurface flow (HSSF) constructed wetlands treating urban wastewater from Les Franqueses del Vallès (Barcelona, Spain). Gravel biofilm as well as influent and effluent water samples of these systems were taken in order to detect the presence of bacterial indicators such as total coliforms (TC), Escherichia coli, fecal enterococci (FE), Clostridium perfringens, and other microbial groups such as Pseudomonas and Aeromonas. The overall microbial inactivation ratio ranged between 1.4 and 2.9 log-units for heterotrophic plate counts (HPC), from 1.2 to 2.2 log units for total coliforms (TC) and from 1.4 to 2.3 log units for E. coli. The presence of fine granulometry strongly influenced the removal of all the bacterial groups analyzed. This effect was significant for TC (p=0.009), E. coli (p=0.004), and FE (p=0.012). Shallow HSSF constructed wetlands were more effective for removing Clostridium spores (p=0.039), and were also more efficient for removing TC (p=0.011) and E. coli (p=0.013) when fine granulometry was used. On the other hand, changes in the total bacterial community from gravel biofilm were examined by using denaturing gradient gel electrophoresis (DGGE) and sequencing of polymerase chain reaction (PCR)-amplified fragments of the 16S rRNA gene recovered from DGGE bands. Cluster analysis of the DGGE banding pattern from the different wetlands showed that microbial assemblages separated according to water depth, and sequences of different phylogenetic groups, such as Alpha, Beta and Delta-Proteobacteria, Nitrospirae, Bacteroidetes

  5. Application of subsurface vertical flow constructed wetlands to reject water treatment in dairy wastewater treatment plant.

    Science.gov (United States)

    Dąbrowski, Wojciech; Karolinczak, Beata; Gajewska, Magdalena; Wojciechowska, Ewa

    2017-01-01

    The paper presents the effects of applying subsurface vertical flow constructed wetlands (SS VF) for the treatment of reject water generated in the process of aerobic sewage sludge stabilization in the biggest dairy wastewater treatment plant (WWTP) in Poland. Two SS VF beds were built: bed (A) with 0.65 m depth and bed (B) with 1.0 m depth, planted with reeds. Beds were fed with reject water with hydraulic load of 0.1 m d -1 in order to establish the differences in treatment efficiency. During an eight-months research period, a high removal efficiency of predominant pollutants was shown: BOD 5 88.1% (A) and 90.5% (B); COD 84.5% (A) and 87.5% (B); TSS 87.6% (A) and 91.9% (B); TKN 82.4% (A) and 76.5% (B); N-NH 4 + 89.2% (A) and 85.7% (B); TP 30.2% (A) and 40.6% (B). There were not statistically significant differences in the removal efficiencies between bed (B) with 1.0 m depth and bed (A) with 0.65 m depth. The research indicated that SS VF beds could be successfully applied to reject water treatment in dairy WWTPs. The study proved that the use of SS VF beds in full scale in dairy WWTPs would result in a significant decrease in pollutants' load in reject water. In the analyzed case, decreasing the load of ammonia nitrogen was of greatest importance, as it constituted 58% of the total load treated in dairy WWTP and posed a hazard to the stability of the treatment process.

  6. Efficiency of a Horizontal Sub-Surface Flow Constructed Wetland Treatment System in an Arid Area

    Directory of Open Access Journals (Sweden)

    Abeer Albalawneh

    2016-02-01

    Full Text Available The main objective of this study was to evaluate the performance and treatment efficiency of the Horizontal Sub-Surface Flow Constructed Wetland treatment system (HSF-CW in an arid climate. Seventeen sub-surface, horizontal-flow HSF-CW units have been operated for approximately three years to improve the quality of partially-treated municipal wastewater. The studied design parameters included two sizes of volcanic tuff media (i.e., fine or coarse, two different bed dimensions (i.e., long and short, and three plantation types (i.e., reed, kenaf, or no vegetation as a control. The effluent Biological Oxygen Demand (BOD5, Chemical Oxygen Demand (COD, Total Suspended Solid (TSS, and phosphorus from all of the treatments were significantly lower as compared to the influent and demonstrated a removal efficiency of 55%, 51%, 67%, and 55%, respectively. There were significant increases in Electrical Conductivity (EC, sulfate, and calcium in the effluent of most HSF-CWs due to evaporative concentration and mineral dissolution from the media. The study suggests that unplanted beds with either fine or coarse media are the most suitable combinations among all of the studied designs based on their treatment efficiency and less water loss in arid conditions.

  7. Timing of pathogen adaptation to a multicomponent treatment.

    Directory of Open Access Journals (Sweden)

    Romain Bourget

    Full Text Available The sustainable use of multicomponent treatments such as combination therapies, combination vaccines/chemicals, and plants carrying multigenic resistance requires an understanding of how their population-wide deployment affects the speed of the pathogen adaptation. Here, we develop a stochastic model describing the emergence of a mutant pathogen and its dynamics in a heterogeneous host population split into various types by the management strategy. Based on a multi-type Markov birth and death process, the model can be used to provide a basic understanding of how the life-cycle parameters of the pathogen population, and the controllable parameters of a management strategy affect the speed at which a pathogen adapts to a multicomponent treatment. Our results reveal the importance of coupling stochastic mutation and migration processes, and illustrate how their stochasticity can alter our view of the principles of managing pathogen adaptive dynamics at the population level. In particular, we identify the growth and migration rates that allow pathogens to adapt to a multicomponent treatment even if it is deployed on only small proportions of the host. In contrast to the accepted view, our model suggests that treatment durability should not systematically be identified with mutation cost. We show also that associating a multicomponent treatment with defeated monocomponent treatments can be more durable than associating it with intermediate treatments including only some of the components. We conclude that the explicit modelling of stochastic processes underlying evolutionary dynamics could help to elucidate the principles of the sustainable use of multicomponent treatments in population-wide management strategies intended to impede the evolution of harmful populations.

  8. Creation of a subsurface permeable treatment barrier using in situ redox manipulation

    International Nuclear Information System (INIS)

    Fruchter, J.S.; Cole, C.R.; Williams, M.D.

    1997-01-01

    The goal of in situ redox manipulation is to create a permeable treatment zone in the subsurface for remediating redox-sensitive contaminants in groundwater. The permeable treatment zone is created just downstream of the contaminant plume or contaminant source through the injection of reagents and/or microbial nutrients to alter the redox potential of the aquifer fluids and sediments. Contaminant plumes migrating through this manipulated zone can then be destroyed or immobilized. In a field test at the Hanford Site, ∼77,000 L of buffered sodium dithionite solution were successfully injected into the unconfined aquifer at the 100-H Area in September 1995. The target contaminant was chromate. No significant plugging of the well screen or the formation was detected during any phase of the test. Dithionite was detected in monitoring wells at least 7.5 m from the injection point. Data were obtained from all three phases of the test (i.e., injection, reaction, withdrawal). Preliminary core data show that from 60% to 100% of the available reactive iron in the targeted aquifer sediments was reduced by the injected dithionite. One year after the injection, groundwater in the treatment zone remains anoxic. Total and hexavalent chromium levels in groundwater have been reduced from a preexperiment concentration of ∼60 μg/L to below the detection limit of the analytical methods

  9. Phage therapy treatment of the coral pathogen Vibrio coralliilyticus.

    Science.gov (United States)

    Cohen, Yossi; Joseph Pollock, F; Rosenberg, Eugene; Bourne, David G

    2013-02-01

    Vibrio coralliilyticus is an important coral pathogen demonstrated to cause disease outbreaks worldwide. This study investigated the feasibility of applying bacteriophage therapy to treat the coral pathogen V. coralliilyticus. A specific bacteriophage for V. coralliilyticus strain P1 (LMG23696), referred to here as bacteriophage YC, was isolated from the seawater above corals at Nelly Bay, Magnetic Island, central Great Barrier Reef (GBR), the same location where the bacterium was first isolated. Bacteriophage YC was shown to be a lytic phage belonging to the Myoviridae family, with a rapid replication rate, high burst size, and high affinity to its host. By infecting its host bacterium, bacteriophage YC was able to prevent bacterial-induced photosystem inhibition in pure cultures of Symbiodinium, the photosymbiont partner of coral and a target for virulence factors produced by the bacterial pathogen. Phage therapy experiments using coral juveniles in microtiter plates as a model system revealed that bacteriophage YC was able to prevent V. coralliilyticus-induced photoinactivation and tissue lysis. These results demonstrate that bacteriophage YC has the potential to treat coral disease outbreaks caused by the bacterial pathogen V. coralliilyticus, making it a good candidate for phage therapy treatment of coral disease. © 2012 The Authors. Published by Blackwell Publishing Ltd. This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

  10. Swine wastewater treatment using vertical subsurface flow constructed wetland planted with Napier grass

    Directory of Open Access Journals (Sweden)

    Pantip Klomjek

    2016-09-01

    Full Text Available This research aims to investigate the pollutant removal efficiencies in swine wastewater using a vertical subsurface flow constructed wetland (VSF CW planted with two species of Napier grass. The grass productivities were also cultivated and compared in order to provide information for species selection. Twelve treatment units were set up with the VSF CWs planted with Giant Napier grass (Pennisetum purpureum cv. King grass and Dwarf Napier grass (Pennisetum purpureum cv. Mott. with 2 and 5 cm d−1 of hydraulic loading rates (HLR. Comparisons of removal efficiency and grass productivity were analyzed using Duncan's Multiple Range Test and t-test at the significant level 0.05. Both species of Napier grass performed more than 70% of removal efficiency of BOD and TKN. The VSF CW planted with Giant Napier grass at 5 cm d−1 HLR performed the highest BOD removal efficiency of 94 ± 1%, while the 2 cm d−1 HLR removed COD with efficiency of 64 ± 6%. The results also showed the effluent from all treatment units contained averages of BOD, COD, TSS, TKN and pH that followed Thailand's swine wastewater quality standard. Average fresh yields and dry yields were between 4.6 ± 0.4 to 15.2 ± 1.2 and 0.5 ± 0.1 to 2.2 ± 0.1 kg m−2, respectively. The dry yields obtained from four cutting cycles in five months of CW system operation were higher than the ones planted with a traditional method, but declined continuously after each cutting cycle. Both species of Napier grass indicated their suitability to be used in the VSF CW for swine wastewater treatment.

  11. Oxygen flux implications of observed nitrogen removal rates in subsurface-flow treatment wetlands.

    Science.gov (United States)

    Tanner, C C; Kadlec, R H

    2003-01-01

    Nitrification, an oxygen-requiring microbial process, is generally considered the rate-limiting step for N removal in subsurface-flow constructed wetlands treating organic wastewaters. We used a simplified model of sequential N transformations and sinks to infer required rates of oxygen supply at 5 stages along experimental wetland mesocosms supplied with four different organic wastewaters with contrasting ratios of COD: N and forms of N. Mass balances of water-borne organic, ammoniacal and nitrate N, and plant and sediment N uptake showed average net rates of N mineralisation ranging from 0.22-0.53 g m(-2) d(-1), nitrification 0.56-2.15 g m(-2) d(-1), denitrification 0.47-1.99 g m(-2) d(-1) (60-84% of measured N removal) and plant assimilation 0.28-0.47 g m(-2) d(-1). The nitrogenous oxygen demand (NOD) required to support the observed nitrification rates alone was high compared to expected fluxes from surficial and plant-mediated oxygen transfer. In the presence of high levels of degradable organic matter (COD removal rates up to 66 g m(-2) d(-1)), heterotrophs with significantly higher oxygen affinities and energy yields are expected to outcompete nitrifiers for available oxygen. Problems with commonly held assumptions on the nature of coupled nitrification-denitrification in treatment wetlands are discussed.

  12. Ibuprofen removal in horizontal subsurface flow constructed wetlands: treatment performance and fungal community dynamics.

    Science.gov (United States)

    Zhang, Dongqing; Luo, Jinxue; Lee, Zarraz May Ping; Gersberg, Richard M; Liu, Yu; Tan, Soon Keat; Ng, Wun Jern

    2016-01-01

    The treatment performance of ibuprofen (IBP)-enriched wastewater by horizontal subsurface flow constructed wetlands planted with cattail (Typha angustifolia) and unplanted control mesocosms was investigated. Removal efficiencies of IBP were significantly (p fungal community in these wetland systems. The overall diversity of the fungal community was reduced under the IBP exposure. Taxonomic analysis revealed that 62.2% of the fungal sequences were affiliated with Basidiomycota, followed by Ascomycota (37.4%) at the phylum level. Uncultured fungus (48.2%), Chaetomium sp. (14.2%), Aspergillus sp. (12.4%), Trichoderma sp. (5.7%), Cladosporium sp. (5.4%), and Emericellopsis sp. (5.2%) were identified as dominant genera. At the genus level, a distinct profile of the fungal community in the IBP-enriched mesocosms was observed as compared to the control beds, and as well specific fungal genera were enhanced in the planted beds, regardless of IBP enrichment. However, despite these differences, the composition of the fungal community (as measured by Bray-Curtis similarity) was mostly unaffected by the significant IBP enrichment. On the other hand, a consistent similarity pattern of fungal community structure in the planted mesocosms suggests that the presence of higher macrophytes in the wetland systems may well help shape the fungal community structure.

  13. Subsurface iron and arsenic removal for drinking water treatment in Bangladesh

    NARCIS (Netherlands)

    Van Halem, D.

    2011-01-01

    Arsenic contamination of shallow tube well drinking water is an urgent health problem in Bangladesh. Current arsenic mitigation solutions, including (household) arsenic removal options, do not always provide a sustainable alternative for safe drinking water. A novel technology, Subsurface Arsenic

  14. A Novel Approach for Pathogen Reduction in Wastewater Treatment

    Directory of Open Access Journals (Sweden)

    Dhevagi Periasamy

    2013-06-01

    Full Text Available Many sewage waste treatment systems are aiming for complete pathogen removal which necessitates search for novel approaches that does not harm the environment. One such novel approach is exploring the possibilities of bacteriophages for pathogen removal. Hospital wastewater was collected from different locations of Tamil Nadu and used for the study. The total heterotroph and total coliform population ranged from 1.6 × 105 to 8.3 × 106 per mL and from 1.2 × 103 to 1.6 × 103/ 100 mL of sample respectively. Higher frequency of antibiotic resistant E. coli, Pseudomonas sp. Streptococcus sp and Bacillus spp were observed in all the places, which clearly indicated the extent of pollution. All the samples had specific phages against E. coli and none of the samples had phages against MTCC culture. E. coli specific phage was isolated and the population of phage required for effective killing of E. coli has been standardized as 3 × 104 pfu / mL of lysate. The inoculation resulted in 100% removal of pathogen from sewage water within 14 hours of incubation.

  15. Subsurface Planar Vitrification Treatment of Problematic TRU Wastes: Status of a Technology Demonstration Program

    International Nuclear Information System (INIS)

    Morse, M.K.; Nowack, B.R.; Thompson, L.E.

    2006-01-01

    This paper provides a status of the In Situ Transuranic Waste Delineation and Removal Project in which the GeoMelt R Subsurface Planar Vitrification TM (SPV TM ) process is being evaluated for the in situ treatment of burial sites containing remote handled mixed transuranic (TRU) waste. The GeoMelt R SPV TM process was invented and patented by Geosafe Corporation. AMEC holds the exclusive worldwide license to use this technology. The current project is part of a three-phase demonstration program to evaluate the effectiveness of the GeoMelt R SPV TM process to treat waste contained in vertical pipe units (VPUs) and caissons that were used for the disposal of remote handled transuranic wastes located at Hanford's 618-10 and 618-11 burial grounds. This project is being performed for the US Department of Energy (DOE) for use at the Hanford site and other DOE installations. The Phase I evaluation determined that removal and treatment of the 618-10/11 VPUs are beyond what can be safely accomplished using conventional excavation methods. Accordingly, a careful stepwise non-intrusive delineation approach and treatment using the GeoMelt R SPV TM technology, followed by removal, characterization, and disposal of the resulting inert vitrified mass was identified as the preferred alternative. Phase II of the project, which started in July 2004, included a full-scale non-radioactive demonstration of AMEC's GeoMelt R SPV TM process on a mock VPU configured to match the actual VPUs. The non-radioactive demonstration (completed in May 2005) was performed to confirm the approach and design before proceeding to a radioactive ('hot') demonstration on an actual VPU. This demonstration took approximately 130 hours, processed the entire mock VPU, and resulted in a vitrified monolith weighing an estimated 90 tonnes. [1] Plans for a radioactive demonstration on an actual VPU are being developed for CY 2006. In addition to demonstrating GeoMelt R SPV TM , delineation techniques are being

  16. Microbial pathogens in wastewater treatment plants (WWTP) in Hamburg.

    Science.gov (United States)

    Ajonina, Caroline; Buzie, Christopher; Rubiandini, Rafi Herfini; Otterpohl, Ralf

    2015-01-01

    Microbial pathogens are among the major health problems associated with water and wastewater. Classical indicators of fecal contamination include total coliforms, Escherichia coli, and Clostridium perfringens. These fecal indicators were monitored in order to obtain information regarding their evolution during wastewater treatment processes. Helminth eggs survive for a long duration in the environment and have a high potential for waterborne transmission, making them reliable contaminant indicators. A large quantity of helminth eggs was detected in the wastewater samples using the Bailanger method. Eggs were found in the influent and effluent with average concentration ranging from 11 to 50 eggs/L. Both E. coli and total coliforms concentrations were significantly 1- to 3-fold higher in influent than in effluent. The average concentrations of E. coli ranged from 2.5×10(3) to 4.4×10(5) colony-forming units (CFU)/100 ml. Concentrations of total coliforms ranged from 3.6×10(3) to 7.9×10(5) CFU/100 ml. Clostridium perfringens was also detected in influent and effluent of wastewater treatment plants (WWTP) at average concentrations ranging from 5.4×10(2) to 9.1×10(2) most probable number (MPN)/100 ml. Significant Spearman rank correlations were found between helminth eggs and microbial indicators (total coliform, E. coli, and C. perfringens) in the WWTP. There is therefore need for additional microbial pathogen monitoring in the WWTP to minimize public health risk.

  17. Treatment of high-strength wastewater in tropical constructed wetlands planted with Sesbania sesban: Horizontal subsurface flow versus vertical downflow

    DEFF Research Database (Denmark)

    Dan, Truong Hoang; Quang, Le Nhat; Chiem, Nguyen Huu

    2011-01-01

    Treatment of various types of wastewaters is an urgent problem in densely populated areas of many tropical countries. We studied the potential of using Sesbania sesban, an N2-fixing shrub, in constructed wetland systems for the treatment of high-strength wastewater. A replicated horizontal...... subsurface flow system and a saturated vertical downflow system was established with planted and unplanted beds to assess the effects of system design and presence of plants on treatment performance. The systems were loaded with a mixture of domestic and pig farm wastewater at three hydraulic loading rates...... of 80, 160 and 320mmd-1. The S. sesban plants grew very well in the constructed wetland systems and produced 17.2-20.2kgdry matterm-2year-1 with a high nitrogen content. Mass removal rates and removal rate constants increased with loading rate, but at 320mmd-1 the effluent quality was unacceptable...

  18. Transport of Pathogen Surrogates in Soil Treatment Units: Numerical Modeling

    Directory of Open Access Journals (Sweden)

    Ivan Morales

    2014-04-01

    Full Text Available Segmented mesocosms (n = 3 packed with sand, sandy loam or clay loam soil were used to determine the effect of soil texture and depth on transport of two septic tank effluent (STE-borne microbial pathogen surrogates—green fluorescent protein-labeled E. coli (GFPE and MS-2 coliphage—in soil treatment units. HYDRUS 2D/3D software was used to model the transport of these microbes from the infiltrative surface. Mesocosms were spiked with GFPE and MS-2 coliphage at 105 cfu/mL STE and 105–106 pfu/mL STE, respectively. In all soils, removal rates were >99.99% at 25 cm. The transport simulation compared (1 optimization; and (2 trial-and-error modeling approaches. Only slight differences between the transport parameters were observed between these approaches. Treating both the die-off rates and attachment/detachment rates as variables resulted in an overall better model fit, particularly for the tailing phase of the experiments. Independent of the fitting procedure, attachment rates computed by the model were higher in sandy and sandy loam soils than clay, which was attributed to unsaturated flow conditions at lower water content in the coarser-textured soils. Early breakthrough of the bacteria and virus indicated the presence of preferential flow in the system in the structured clay loam soil, resulting in faster movement of water and microbes through the soil relative to a conservative tracer (bromide.

  19. Steam-treatment-based soil remediation promotes heat-tolerant, potentially pathogenic microbiota

    DEFF Research Database (Denmark)

    Altenburger, Andreas; Bender, Mikkel; Ekelund, Flemming

    2014-01-01

    soil, at a depth of about 40 cm, reached a temperature c. 45°C higher than untreated soil. The soil was examined prior to, during, and 6, 12, 14, 20 and 31 months after treatment. Numbers of bacteria cultivable at 42°C increased significantly in subsurface soil. Similarly, substrate utilization...

  20. Progressive multiple sclerosis: from pathogenic mechanisms to treatment.

    Science.gov (United States)

    Correale, Jorge; Gaitán, María I; Ysrraelit, María C; Fiol, Marcela P

    2017-03-01

    During the past decades, better understanding of relapsing-remitting multiple sclerosis disease mechanisms have led to the development of several disease-modifying therapies, reducing relapse rates and severity, through immune system modulation or suppression. In contrast, current therapeutic options for progressive multiple sclerosis remain comparatively disappointing and challenging. One possible explanation is a lack of understanding of pathogenic mechanisms driving progressive multiple sclerosis. Furthermore, diagnosis is usually retrospective, based on history of gradual neurological worsening with or without occasional relapses, minor remissions or plateaus. In addition, imaging methods as well as biomarkers are not well established. Magnetic resonance imaging studies in progressive multiple sclerosis show decreased blood-brain barrier permeability, probably reflecting compartmentalization of inflammation behind a relatively intact blood-brain barrier. Interestingly, a spectrum of inflammatory cell types infiltrates the leptomeninges during subpial cortical demyelination. Indeed, recent magnetic resonance imaging studies show leptomeningeal contrast enhancement in subjects with progressive multiple sclerosis, possibly representing an in vivo marker of inflammation associated to subpial demyelination. Treatments for progressive disease depend on underlying mechanisms causing central nervous system damage. Immunity sheltered behind an intact blood-brain barrier, energy failure, and membrane channel dysfunction may be key processes in progressive disease. Interfering with these mechanisms may provide neuroprotection and prevent disability progression, while potentially restoring activity and conduction along damaged axons by repairing myelin. Although most previous clinical trials in progressive multiple sclerosis have yielded disappointing results, important lessons have been learnt, improving the design of novel ones. This review discusses mechanisms involved

  1. Subsurface drainage

    CSIR Research Space (South Africa)

    Van Der Merwe, CJ

    1993-09-01

    Full Text Available The report describes the findings of the research project on subsurface drainage. The need for drainage was quantified by evaluating HVS tests on wet pavements. Geotextiles were investigated and various tests performed. Soil/geotextile compatibility...

  2. [Study on subsurface wastewater infiltration system covered by different turfgrass for domestic sewage treatment].

    Science.gov (United States)

    Zhang, Xiao-Hui; Cui, Jian-Yu; Lan, Yan; Zhao, Yang-Yang; Hu, Lin

    2011-01-01

    Domestic sewage was treated with subsurface wastewater infiltration system covered by two different turfgrass, namely, Festuca arundinacea Schres. and Zoysia japonica Steud.. The result shows that all the different systems have good removal rates to COD. The concentration of COD decreased to less than 48 mg x L(-1) from 97-357 mg x L(-1) which achieve the second class criteria specified in Integrated Wastewater Discharge Standard, and there are no prominent difference among different systems. The concentration of NH4(+) -N decreased to less than 0.5 mg x L(-1) from 76.3-125.8 mg x L(-1) which achieve the IV criteria (Groundwater Quality Standard, the effluent concentration of NH4(+) -N in naked system are prominently higher than that in system covered by Festuca arundinacea Schres., and there are no prominent difference compared with system covered by Zoysia japonica Steud.. The concentration of TP in different systems decreased to less than 0.05 mg x L(-1) from 3.70-18.42 mg x L(-1) which achieve the II criteria (rates of TN and nitrate were all not good enough, the probability which achieve the III criteria (Groundwater Quality Standard are less than one third, and the effluent concentration of TN and nitrate in naked system are prominently higher than that in systems covered by Festuca arundinacea Schres. and Zoysia japonica Steud..

  3. A study of subsurface wastewater infiltration systems for distributed rural sewage treatment.

    Science.gov (United States)

    Qin, Wei; Dou, Junfeng; Ding, Aizhong; Xie, En; Zheng, Lei

    2014-08-01

    Three types of subsurface wastewater infiltration systems (SWIS) were developed to study the efficiency of organic pollutant removal from distributed rural sewage under various conditions. Of the three different layered substrate systems, the one with the greatest amount of decomposed cow dung (5%) and soil (DCDS) showed the highest removal efficiency with respect to total nitrogen (TN), where the others showed no significant difference. The TN removal efficiency was increased with an increasing filling height of DCDS. Compared with the TN removal efficiency of 25% in the system without DCDS, the removal efficiency of the systems in which DCDS filled half and one fourth of the height was increased by 72% and 31%, respectively. Based on seasonal variations in the discharge of the typical rural family, the SWIS were run at three different hydraulic loads of 6.5, 13 and 20 cm/d. These results illustrated that SWIS could perform well at any of the given hydraulic loads. The results of trials using different inlet configurations showed that the effluent concentration of the contaminants in the system operating a multiple-inlet mode was much lower compared with the system operated under single-inlet conditions. The effluent concentration ofa pilot-scale plant achieved the level III criteria specified by the Surface Water Quality Standard at the initial stage.

  4. Investigating the efficiency and kinetic coefficients of nutrient removal in the subsurface artificial wetland of Yazd wastewater treatment plant

    Directory of Open Access Journals (Sweden)

    Mahdi Farzadkia

    2015-01-01

    Full Text Available Background: Investigating the performance of naturally operated treatment plants may be due to the fact that they cannot be operated as desired, or that they should be modified to achieve good performance e.g. for nutrients removal. The advantage of kinetic coefficient determination is that the model can be adjusted to fit data and then used for analyzing alternatives to improve the process. This study investigates the efficiency of subsurface artificial wetland and determines its kinetic coefficients for nutrient removal. Methods: The present study investigated the kinetics of biological reactions that occurred in subsurface wetland to remove wastewater nutrient. Samples were taken from 3 locations of wetlands for 6 months. The nutrient content was determined through measuring Total Kjehldahl Nitrogen (TKN, ammonium, nitrate, and phosphate values. Results: Average levels for TKN, ammonium, nitrate, and phosphate in effluent of control wetland were 41.15, 23.59, 1.735, and 6.43 mg/L, and in wetland with reeds were 28.91, 19.99, 1.49 and 5.63 mg/L, respectively. First-order, second-order, and Stover-Kincannon models were applied and analyzed using statistical parameters obtained from the models (Umax, KB. Conclusion: The nutrients removal at Yazd wastewater treatment plant was remarkable, and the presence of reeds in wetland beds was not very efficient in improving system performance. Other more efficient plants are suggested to be evaluated in the system. Stover-Kincannon kinetic model provided predictions having the closest relationship with actual data obtained from the field.

  5. Effect of design and operational conditions on the performance of subsurface flow treatment wetlands: Emerging organic contaminants as indicators.

    Science.gov (United States)

    Kahl, Stefanie; Nivala, Jaime; van Afferden, Manfred; Müller, Roland A; Reemtsma, Thorsten

    2017-11-15

    Six pilot-scale subsurface flow treatment wetlands loaded with primary treated municipal wastewater were monitored over one year for classical wastewater parameters and a set of emerging organic compounds (EOCs) serving as process indicators for biodegradation: caffeine, ibuprofen, naproxen, benzotriazole, diclofenac, acesulfame, and carbamazepine. The wetland technologies investigated included conventional horizontal flow, unsaturated vertical flow (single and two-stage), horizontal flow with aeration, vertical flow with aeration, and reciprocating. Treatment efficiency for classical wastewater parameters and EOCs generally increased with increasing design complexity and dissolved oxygen concentrations. The two aerated wetlands and the two-stage vertical flow system showed the highest EOC removal, and the best performance in warm season and most robust performance in the cold season. These three systems performed better than the adjacent conventional WWTP with respect to EOC removal. Acesulfame was observed to be removed (>90%) by intensified wetland systems and with use of a tertiary treatment sand filter during the warm season. Elevated temperature and high oxygen content (aerobic conditions) proved beneficial for EOC removal. For EOCs of moderate to low biodegradability, the co-occurrence of aerobic conditions and low content of readily available carbon appears essential for efficient removal. Such conditions occurred in the aerated systems and with use of a tertiary treatment sand filter. Copyright © 2017 Elsevier Ltd. All rights reserved.

  6. Bioeconomic modeling of lactational antimicrobial treatment of new bovine subclinical intramammary infections caused by contagious pathogens

    NARCIS (Netherlands)

    Borne, van den B.H.P.; Halasa, T.; Schaik, van G.; Hogeveen, H.; Nielen, M.

    2010-01-01

    This study determined the direct and indirect epidemiologic and economic effects of lactational treatment of new bovine subclinical intramammary infections (IMI) caused by contagious pathogens using an existing bioeconomic model. The dynamic and stochastic model simulated the dynamics of

  7. Subsurface probing

    International Nuclear Information System (INIS)

    Lytle, R.J.

    1978-01-01

    Imaging techniques that can be used to translate seismic and electromagnetic wave signals into visual representation are briefly discussed. The application of these techniques is illustrated on the example of determining the subsurface structure of a proposed power plant. Imaging makes the wave signals intelligible to the non-geologists. R and D work needed in this area are tabulated

  8. 7 CFR 305.40 - Garbage treatment schedules for insect pests and pathogens.

    Science.gov (United States)

    2010-01-01

    ... 7 Agriculture 5 2010-01-01 2010-01-01 false Garbage treatment schedules for insect pests and... Garbage § 305.40 Garbage treatment schedules for insect pests and pathogens. (a) T415-a, heat treatment. Incinerate to ash. Caterers under compliance agreement using an incinerator for garbage must comply with the...

  9. Incorporation of oxygen contribution by plant roots into classical dissolved oxygen deficit model for a subsurface flow treatment wetland.

    Science.gov (United States)

    Bezbaruah, Achintya N; Zhang, Tian C

    2009-01-01

    It has been long established that plants play major roles in a treatment wetland. However, the role of plants has not been incorporated into wetland models. This study tries to incorporate wetland plants into a biochemical oxygen demand (BOD) model so that the relative contributions of the aerobic and anaerobic processes to meeting BOD can be quantitatively determined. The classical dissolved oxygen (DO) deficit model has been modified to simulate the DO curve for a field subsurface flow constructed wetland (SFCW) treating municipal wastewater. Sensitivities of model parameters have been analyzed. Based on the model it is predicted that in the SFCW under study about 64% BOD are degraded through aerobic routes and 36% is degraded anaerobically. While not exhaustive, this preliminary work should serve as a pointer for further research in wetland model development and to determine the values of some of the parameters used in the modified DO deficit and associated BOD model. It should be noted that nitrogen cycle and effects of temperature have not been addressed in these models for simplicity of model formulation. This paper should be read with this caveat in mind.

  10. Inactivation of pathogens on pork by steam-ultrasound treatment

    DEFF Research Database (Denmark)

    Morild, Rikke K; Christiansen, Pia; Sørensen, Anders Morten Hay

    2011-01-01

    Derby, Salmonella Infantis, Yersinia enterocolitica, and a nonpathogenic Escherichia coli was studied on inoculated samples that were treated for 0.5 to 2.0 s. With one exception, no significant differences in reduction were observed among the bacterial types. After treatment for 0.5 s, the 0.9-to 1.......5-log reductions of E. coli were significantly higher than the 0.4- to 1.1-log reductions for Salmonella and Y. enterocolitica. Overall, reductions increased by increasing treatment time; reductions were 0.4 to 1.5 log CFU/cm(2) after treatment for 0.5 s and 2.0 to 3.6 log CFU/cm(2) after treatment...

  11. Greenhouse wastewater treatment by baffled subsurface-flow constructed wetlands supplemented with flower straws as carbon source in different modes.

    Science.gov (United States)

    Chang, Junjun; Ma, Luyao; Chen, Jinquan; Lu, Yifeng; Wang, Xiaoyun

    2017-01-01

    Four laboratory-scale baffled subsurface-flow constructed wetlands (BSCWs) were established for the treatment of greenhouse wastewater containing high levels of nitrate and sulfate in the present study. Each BSCW microcosm involved a treatment zone and another post-treatment zone with a surface area ratio of 2:1. Evenly mixed straws of carnation and rose (w/w: 1/1), two common ornamental flowers, were supplemented as an organic carbon source into the treatment zone through a hydrolysis zone (CW 1), decentralized vertically installed perforated pipes (CW 2), and centralized pipes (CW 3 in the figures), except the blank system. Removals and transformations of nitrogen and sulfate as well as carbon release in the BSCWs were investigated and comparatively assessed. Results showed that the supplements of flower straws could greatly enhance both the nitrate and sulfate removals, and good performance was achieved during the beginning operation period of 30 days, followed by decline due to insufficient organic carbon supply. Nitrate removal efficiency was significantly higher and more stable compared to sulfate. The highest removal rates of nitrate and sulfate were achieved in the CW 3, with a mean value of 4.33 g NO 3 - -N·m -2  d -1 and 2.74 g SO 4 2- -S·m -2  d -1 , respectively, although the differences among the experimental microcosms were not statistically significant. However, almost the same TN removal rate (3.40-3.47 g N·m -2  d -1 ) was obtained due to the productions of NO 2 - -N and NH 4 + -N and leaching of organic N from the straws. High contents of organic carbon and colored substance were leached from the straws during the initial 10 days, but dropped rapidly to low levels, and could hardly determined after 30 days operation. The post-treatment zone could further eliminate various contaminants, but the capability was limited. Inorganic carbon (IC) concentration was detected to be a highly good indicator for the estimation of nitrate and

  12. Pathogenic background for treatment of ascites and the hepatorenal syndrome

    DEFF Research Database (Denmark)

    Møller, Søren; Henriksen, Jens Henrik; Bendtsen, Flemming

    2008-01-01

    Abstract Ascites and hepatorenal syndrome (HRS) are the major and challenging complications of cirrhosis and portal hypertension that significantly affect the course of the disease. Liver insufficiency, portal hypertension, arterial vasodilatation, and systemic cardiovascular dysfunction are major...... pathophysiological hallmarks. Modern treatment of ascites is based on this recognition and includes modest salt restriction and stepwise diuretic therapy with spironolactone and loop diuretics. Tense and refractory ascites should be treated with a large volume paracentesis, followed by volume expansion...... seek to improve liver function, ameliorate arterial hypotension and central hypovolemia, and reduce renal vasoconstriction. Ample treatment of ascites and HRS is important to improve the quality of life and prevent further complications, but since treatment of fluid retention does not significantly...

  13. Wastewater treatment plants as a source of microbial pathogens in ...

    African Journals Online (AJOL)

    Wastewater treatment facilities have become sin quo non in ensuring the discharges of high quality wastewater effluents into receiving water bodies and consequence, a healthier environment. Due to massive worldwide increases in human population, water has been predicted to become one of the scarcest resources in ...

  14. Pathogenic background for treatment of ascites and the hepatorenal syndrome

    DEFF Research Database (Denmark)

    Møller, Søren; Henriksen, Jens Henrik; Bendtsen, Flemming

    2008-01-01

    Abstract Ascites and hepatorenal syndrome (HRS) are the major and challenging complications of cirrhosis and portal hypertension that significantly affect the course of the disease. Liver insufficiency, portal hypertension, arterial vasodilatation, and systemic cardiovascular dysfunction are major...... pathophysiological hallmarks. Modern treatment of ascites is based on this recognition and includes modest salt restriction and stepwise diuretic therapy with spironolactone and loop diuretics. Tense and refractory ascites should be treated with a large volume paracentesis, followed by volume expansion...

  15. Bioaccumulation of radionuclides and metals by microorganisms: Potential role in the separation of inorganic contaminants and for the in situ treatment of the subsurface

    International Nuclear Information System (INIS)

    Bolton, H. Jr.; Wildung, R.E.

    1993-01-01

    Radionuclide, metal and organic contaminants are present in relatively inaccessible subsurface environments at many U.S Department of Energy (DOE) sites. Subsurface contamination is of concern to DOE because the migration of these contaminants into relatively deep subsurface zones indicates that they exist in a mobile chemical form and thus could potentially enter domestic groundwater supplies. Currently, economic approaches to stabilize or remediate these deep contaminated zones are limited, because these systems are not well characterized and there is a lack of understanding of how geochemical, microbial, and hydrological processes interact to influence contaminant behavior. Microorganisms offer a potential means for radionuclide and metal immobilization or mobilization for subsequent surface treatment. Bioaccumulation is a specific microbial sequestering mechanism wherein mobile radionuclides and metals become associated with the microbial biomass by both intra- and extracellular sequestering ligands. Since most of the microorganism in the subsurface are associated with the stationary strata, bioaccumulation of mobile radionuclides and metals would initially result in a decrease in the transport of inorganic contaminants. How long the inorganic contaminants would remain immobilized, the selectivity of the bioaccumulation process for specific inorganic contaminants, the mechanism involved, and how the geochemistry and growth conditions of the subsurface environment influence bioaccumulation are not currently known. This presentation focuses on the microbial process of immobilizing radionuclides and metals and using this process to reduce inorganic contaminant migration at DOE sites. Background research with near-surface microorganisms will be presented to demonstrate this process and show its potential to reduce inorganic contaminant migration. Future research needs and approaches in this relatively new research area will also be discussed

  16. Detection, fate and inactivation of pathogenic norovirus employing settlement and UV treatment in wastewater treatment facilities

    International Nuclear Information System (INIS)

    Barrett, M.; Fitzhenry, K.; O'Flaherty, V.; Dore, W.; Keaveney, S.; Cormican, M.; Rowan, N.; Clifford, E.

    2016-01-01

    It is accepted that discharged wastewaters can be a significant source of pathogenic viruses in receiving water bodies contributing to pollution and may in turn enter the human food chain and pose a risk to human health, thus norovirus (NoV) is often a predominant cause of gastroenteritis globally. Working with NoV poses particular challenges as it cannot be readily identified and detection by molecular methods does not assess infectivity. It has been proposed that the infectivity of NoV may be modelled through the use of an alternative virus; F-specific RNA (FRNA) bacteriophages; GA genotype and other FRNA bacteriophages have been used as a surrogate in studies of NoV inactivation. This study investigated the efficiency of novel pulsed ultraviolet irradiation and low pressure ultraviolet irradiation as a potential pathogen inactivation system for NoV and FRNA bacteriophage (GA) in secondary treated wastewaters. The role of UV dose and the impact of suspended solids concentration on removal efficiency were also examined. The study also investigated the role of settlement processes in wastewater treatment plants in removing NoV. While NoV inactivation could not be determined it was found that at a maximum UV dose of 6.9 J/cm 2 (6900 mJ/cm 2 ) an average 2.4 log removal of FRNA bacteriophage (GA) was observed; indicating the potential need for high UV doses to remove NoV if FRNA bacteriophage prove a suitable indicator for NoV. The study found that increasing concentrations of suspended solids impacted on PUV efficiency however, it appears the extent of the impact may be site specific. Furthermore, the study found that settlement processes can play a significant role in the removal of FRNA bacteriophage, thus potentially NoV. - Highlights: • Effectiveness of low pressure UV and novel high-intensity pulsed UV disinfection in NoVs removal. • Reduction of FRNA bacteriophage was seen in clarified wastewater after settling. • Adsorption of viral particles to solids

  17. Detection, fate and inactivation of pathogenic norovirus employing settlement and UV treatment in wastewater treatment facilities

    Energy Technology Data Exchange (ETDEWEB)

    Barrett, M. [Microbial Ecology Laboratory, Microbiology, School of Natural sciences, National University of Ireland Galway (Ireland); Ryan Institute, National University of Ireland Galway (Ireland); College of Engineering and Informatics, National University of Ireland Galway (Ireland); Fitzhenry, K. [Ryan Institute, National University of Ireland Galway (Ireland); College of Engineering and Informatics, National University of Ireland Galway (Ireland); O' Flaherty, V. [Microbial Ecology Laboratory, Microbiology, School of Natural sciences, National University of Ireland Galway (Ireland); Ryan Institute, National University of Ireland Galway (Ireland); Dore, W.; Keaveney, S. [Marine Institute, Galway (Ireland); Cormican, M. [Ryan Institute, National University of Ireland Galway (Ireland); Centre for Health from Environment, Ryan Institute, National University of Ireland Galway (Ireland); Rowan, N. [Bioscience Research Institute, Athlone Institute of Technology (Ireland); Clifford, E., E-mail: eoghan.clifford@nuigalway.ie [Ryan Institute, National University of Ireland Galway (Ireland); College of Engineering and Informatics, National University of Ireland Galway (Ireland)

    2016-10-15

    It is accepted that discharged wastewaters can be a significant source of pathogenic viruses in receiving water bodies contributing to pollution and may in turn enter the human food chain and pose a risk to human health, thus norovirus (NoV) is often a predominant cause of gastroenteritis globally. Working with NoV poses particular challenges as it cannot be readily identified and detection by molecular methods does not assess infectivity. It has been proposed that the infectivity of NoV may be modelled through the use of an alternative virus; F-specific RNA (FRNA) bacteriophages; GA genotype and other FRNA bacteriophages have been used as a surrogate in studies of NoV inactivation. This study investigated the efficiency of novel pulsed ultraviolet irradiation and low pressure ultraviolet irradiation as a potential pathogen inactivation system for NoV and FRNA bacteriophage (GA) in secondary treated wastewaters. The role of UV dose and the impact of suspended solids concentration on removal efficiency were also examined. The study also investigated the role of settlement processes in wastewater treatment plants in removing NoV. While NoV inactivation could not be determined it was found that at a maximum UV dose of 6.9 J/cm{sup 2} (6900 mJ/cm{sup 2}) an average 2.4 log removal of FRNA bacteriophage (GA) was observed; indicating the potential need for high UV doses to remove NoV if FRNA bacteriophage prove a suitable indicator for NoV. The study found that increasing concentrations of suspended solids impacted on PUV efficiency however, it appears the extent of the impact may be site specific. Furthermore, the study found that settlement processes can play a significant role in the removal of FRNA bacteriophage, thus potentially NoV. - Highlights: • Effectiveness of low pressure UV and novel high-intensity pulsed UV disinfection in NoVs removal. • Reduction of FRNA bacteriophage was seen in clarified wastewater after settling. • Adsorption of viral particles

  18. Voriconazole as a first-line treatment against potentially pathogenic Acanthamoeba strains from Peru.

    Science.gov (United States)

    Cabello-Vílchez, Alfonso Martín; Martín-Navarro, Carmen M; López-Arencibia, Atteneri; Reyes-Batlle, María; Sifaoui, Ines; Valladares, Basilio; Piñero, José E; Lorenzo-Morales, Jacob

    2014-02-01

    Pathogenic strains of Acanthamoeba genus are the causative agents of fatal granulomatous amoebic encephalitis and a serious sight-threatening infection of the eye known as Acanthamoeba keratitis. In a previous study, Acanthamoeba strains were isolated from nasal swabs collected from healthy individuals in Peru. In the present study, the pathogenic potential of the isolated strains was established based on temperature and osmotolerance assays as well as the secretion rate of extracellular proteases. Based on these experiments, four strains that showed the highest pathogenic potential were selected for sensitivity assays against two molecules (voriconazole and chlorhexidine) which are currently used for the treatment of Acanthamoeba infections. After performing sensitivity and activity assays, it was found that both drugs were active against the tested strains. However, voriconazole showed higher activity against the studied strains compared to chlorhexidine. Therefore, voriconazole should be established as a first-line treatment against Acanthamoeba infections at least in the studied region of Peru.

  19. Microbial pathogens in source and treated waters from drinking water treatment plants in the US

    Science.gov (United States)

    An occurrence survey was conducted on selected pathogens in source and treated drinking water collected from 25 drinking water treatment plants (DWTPs) in the United States. Water samples were analyzed for the protozoa Giardia and Cryptosporidium (EPA Method 1623); the fungi Asp...

  20. Pathogen reduction treatment using riboflavin and ultraviolet light impairs platelet reactivity toward specific agonists in vitro

    NARCIS (Netherlands)

    Zeddies, Sabrina; de Cuyper, Iris M.; van der Meer, Pieter F.; Daal, Brunette B.; de Korte, Dirk; Gutiérrez, Laura; Thijssen-Timmer, Daphne C.

    2014-01-01

    Recent studies showed that Mirasol pathogen reduction treatment (PRT) leads to increased P-selectin expression and increased oxygen and glucose consumption in resting platelets (PLTs). This study investigates the effect of PRT on PLT activation. Untreated or Mirasol-treated PLTs were analyzed at

  1. Non- chemical methods of seed treatment for control of seed- borne pathogens on vegetables

    NARCIS (Netherlands)

    Amein, T.; Wright, S.A.I.; Wickstrom, M.; Schmitt, A.; Koch, E.; Wolf, van der J.M.; Groot, S.P.C.; Werner, S.; Jahn, M.

    2006-01-01

    The aim of EU-project "Seed Treatments for Organic Vegetable Production" (STOVE) was to evaluate non-chemical methods for control of seed-borne pathogens in organic vegetable production. Physical (hot air, hot water and electron) and biologi-cal (microorganisms and different agents of natural

  2. Enhanced protection of pathogenic Escherichia coli ingested by a soil nematode Caenorhabditis elegans against sanitizer treatments.

    Science.gov (United States)

    Park, Mi Ri; Oh, Sangnam; Yun, Hyun Sun; Kim, Soon Han; Ko, Young Ho; Ryu, Jee-Hoon; Rhee, Min Suk; Shin, Ok Sarah; Kim, Younghoon

    2014-01-01

    We employed Caenorhabditis elegans as a model to study the effectiveness of sanitizers in killing pathogenic Escherichia coli strains ingested by free-living nematodes. Adult worms that had fed on six pathogenic E. coli strains (highly persistent in the nematode intestine) were treated with three chemical solutions. In planktonic cells, none of the H2O2 and acetic acid treatments influenced the survival of the pathogenic E. coli strains, whereas sodium hypochlorite critically decreased the viability of the strains. Importantly, the survival of the E. coli strains was dramatically increased by persistence in the C. elegans gut under 0.1% sodium hypochlorite, and several strains could survive at a concentration of 0.5%. In addition, all pathogenic E. coli strains in the C. elegans gut survived on the lettuce for 5 days even though they were washed with 0.1% sodium hypochlorite. Taken together, our results indicate that pathogenic E. coli ingested by C. elegans may be protected against washing treatment with commercial sanitizers on raw food materials.

  3. Assessment and risk reduction of infectious pathogens on chiropractic treatment tables

    Directory of Open Access Journals (Sweden)

    Husbands Chris

    2007-06-01

    Full Text Available Abstract Background To investigate the presence of pathogenic microbes on chiropractic treatment tables in one outpatient teaching clinic. Additional aims were to test inexpensive disinfectants on tables that may kill microbes and suggest infection control measures for chiropractic offices, clinics and classrooms. The aim of the study was to assess the presence of pathogenic microbes on treatment tables in one outpatient teaching clinic and determine a simple behavioral model for infection control including table disinfection and accepted hand washing and sanitizing protocols. Methods 10 treatment tables were selected and sampled for possible microbial flora on face and hand pieces. Samples were cultured on MacConky's agar and mannitol salt agar, labeled and incubated for up to 48 hours. Confirmatory testing of microbes to determine if drug resistant flora were present was performed. Among tables tested, 5 were selected to test disinfectants. One-half of the face piece and 1 hand piece were treated with two different wipes and then post-tested for microbes. Results Pathogenic microbes were present on chiropractic treatment tables including methicillin-resistant Staph aureus. Simple disinfectants neutralized the pathogens. A rudimentary disinfection procedure and infection control measures are suggested based on the findings. Conclusion Pathogenic microbes may be present on chiropractic treatment tables and can be effectively killed with proper disinfecting. Hand washing/sanitizing is an important measure in infection control as is table disinfecting. Rudimentary behavioral changes to improve chiropractic clinic infection control are needed. More comprehensive behavioral models are needed. All teaching clinics and private chiropractic offices should adopt infection control practices including routine table disinfecting and hand sanitizing. Effective measures can be put in place at minimal costs. Accrediting bodies of chiropractic institutions

  4. Verification of an alternative sludge treatment process for pathogen reduction at two wastewater treatment plants in Victoria, Australia.

    Science.gov (United States)

    Irwin, R; Surapaneni, A; Smith, D; Schmidt, J; Rigby, H; Smith, S R

    2017-08-01

    At South East Water wastewater treatment plants (WwTPs) in Victoria, Australia, biosolids are stockpiled for three years in compliance with the State guidelines to achieve the highest pathogen reduction grade (T1), suitable for unrestricted use in agriculture and landscaping. However, extended stockpiling is costly, may increase odour nuisance and greenhouse gas emissions, and reduces the fertiliser value of the biosolids. A verification programme of sampling and analysis for enteric pathogens was conducted at two WwTPs where sludge is treated by aerobic and anaerobic digestion, air drying (in drying pans or solar drying sheds) and stockpiling, to enumerate and, if present, monitor the decay of a range of enteric pathogens and parasites. The sludge treatment processes at both WwTPs achieved T1 grade biosolids with respect to prescribed pathogenic bacterial numbers (3 log 10 enteric virus reduction after a storage period of one year. No Ascaris eggs were detected in the influent to the WwTPs, confirming previous studies that the presence of helminth infections in Victoria is extremely low and that Ascaris is not applicable as a control criterion for the microbiological quality of biosolids in the region.

  5. Profilometry and subsurface imaging in point of care diagnosis in ocular disease and lymphedema after breast cancer treatment

    Science.gov (United States)

    Sayegh, Samir I.; Taghian, Alphonse

    2013-03-01

    Breast cancer-related lymphedema (BCRL) can be irreversible with profound negative impact on patients' quality of life. Programs that provide screening and active surveillance for BCRL are essential to determine whether early detection and intervention influences the course of lymphedema development. Established methods of quantitatively assessing lymphedema at early stages include "volume" methods such as perometry and bioimpedance spectroscopy. Here we demonstrate 1) Use of topographical techniques analogous to those used in corneal topography 2) Development of point-of-care lymphedema detection and characterization based on off-the-shelf hardward 3) The role of subsurface imaging 4) Multimodal diagnostics and integration yielding higher sensitivity/ specificity.

  6. Overview of the ability of different treatment methods for liquid and solid manure to inactivate pathogens.

    Science.gov (United States)

    Martens, W; Böhm, R

    2009-11-01

    The use of manure as a fertilizer in agriculture includes the risk of spreading pathogenic infectious agents to the environment, to animals and humans. The treatment of manure can help avoid or reduce these risks. Even if the treatment is dominated by economic considerations such as biogas production, ammonia stripping or phosphorous precipitation, the hygienic aspect should be kept in mind. Otherwise, new infection chains may be established by the use of insufficiently treated manure by-products such as fertilizers still containing infective pathogens. Treatment plants should use a concept according to HACCP principles that includes hazard analysis, risk assessment, the determination of process relevant CCPs and the validation of the process by determining the hygienizing efficiency using representative test organisms as well as microbial end product supervision. Treatment methods can be divided into physical, chemical and microbiological treatment, sometimes used in combination. For economical reasons, only composting or anaerobic treatment (biogas) or, to a minor extent, aerobic thermophilic stabilization (ATS) are used as routine preventive measures on a farm level. In cases of outbreaks of notifiable diseases both physical and chemical treatment of manure can lead to reliable disinfected/pasteurised end products which can be used in agriculture without long-lasting risks for soil fertility or the environment.

  7. Salivary levels of suspected periodontal pathogens in relation to periodontal status and treatment.

    Science.gov (United States)

    von Troil-Lindén, B; Torkko, H; Alaluusua, S; Jousimies-Somer, H; Asikainen, S

    1995-11-01

    The primary ecological niche for suspected periodontal pathogens seems to be the subgingival area, even though periodontal pathogens are also frequently recovered from saliva. The interrelationship of different periodontal conditions and the salivary levels of suspected periodontal pathogens is not known. In the present study, salivary levels of Actinobacillus actinomycetemcomitans, Porphyromonas gingivalis, Prevotella intermedia, Campylobacter rectus, and Peptostreptococcus micros were determined by bacterial culture and related to clinical periodontal status in 40 subjects with either advanced, moderate, or initial/no periodontitis. Culture-positive subjects harbored the 5 bacterial species in mean numbers ranging from 2 x 10(5) to 6 x 10(7) colony-forming units (CFU)/mL saliva. A. actinomycetemcomitans was found in none and P. gingivalis in one of the subjects with initial periodontitis, whereas both species were found in 33% and 44%, respectively, of the subjects with moderate periodontitis and in 60% and 40%, respectively, of the subjects with advanced periodontitis. The mean numbers of CFU/mL of P. intermedia, C. rectus and P. micros were significantly higher in subjects with advanced periodontitis than in subjects with initial/no periodontitis. Ten patients with advanced periodontitis were treated mechanically and with adjunctive systemic metronidazole, and were re-examined 1 and 6 months after treatment. Periodontal treatment eradicated or significantly reduced the levels of salivary periodontal pathogens for half a year, whereas in untreated subjects, the levels and the detection frequencies generally remained fairly stable. In conclusion, the results showed that the salivary levels of periodontal pathogens reflect the periodontal status of the patient.

  8. Combined treatment of solar energy and gamma irradiation to eliminate pathogenic bacteria in dewatered sludge

    International Nuclear Information System (INIS)

    Hilmy, N.; Harsoyo, S.; Suwirma, S.

    1987-01-01

    Combined treatment of solar energy and gamma irradiation to eliminate pathogenic bacteria in dewatered sludge. A combined treatment of solar energy and gamma irradiation has been done to eliminate the pathogenic microbes contaminating dewatered sludge. Samples were collected during dry season, i.e. from June to September 1985. To reduce the water content from 70% to 20%, solar energy from sun rays was used, i.e. from 9 a.m. to 2 p.m. for 4 days. Total bacterial count coliform bacteria Escherichia coli, Fecal Streptococcus, Enterobacteriaceae, and Pseudomonas sp were found to be 7.4x10 8 per g, 4.1x10 3 per g, 4.5x10 2 per g, 3.1x10 5 per g, 3.6x10 4 per g, and 5.4x10 3 per g of samples respectively. The combined treatment could reduce the irradiation dose needed to eliminate the pathogenic microbes of samples investigated from 6 to 2 kGy. (author). 5 figs, 11 refs

  9. Life history tradeoffs of pathogens and the treatment principle of antibiogenesis

    Directory of Open Access Journals (Sweden)

    Rui-An Wang

    2017-09-01

    Full Text Available There are no eternal individual lives so life continues by relaying with reproduction. Consequently, lifespan and fecundity are two essential genetic traits of life. The life history tradeoffs theory holds that there is an inverse relationship between lifespan and fecundity. This paper proposes two new concepts, i.e., “lifespan of pathogens” and treatment of infections by “antibiogenesis”. The lifespan of pathogens is the time limitation of those tiny lives just as other large creatures. Notably, the lifespan of bacterium is the time interval from the cell division by which it is produced to next division by then its life ends and transforms to two new lives, or dies. Antibiogenesis means inhibiting generation of new lives. By the principle of life history tradeoffs, the lifespan of pathogens determines the speed of their proliferations and consequently the modality of infection. The treatment principle of antibiogenesis requires the duration of treatment to be determined by the lifespan of infected pathogens. The life history tradeoffs theory and the two concepts are helpful to understanding the pathobiology and shaping the clinical aspects of infectious diseases.

  10. Reduction of potential respiratory pathogens by oral hygienic treatment in patients undergoing endotracheal anesthesia.

    Science.gov (United States)

    Okuda, Minori; Kaneko, Yuzuru; Ichinohe, Tatsuya; Ishihara, Kazuyuki; Okuda, Katsuji

    2003-01-01

    This study was conducted to evaluate the usefulness of mechanical and chemical prophylactic oral cleansing treatments for reducing potential respiratory pathogens existing in the oral cavity. Thirty-two patients scheduled to undergo oral and maxillofacial surgery that required endotracheal anesthesia were randomly allocated to one of the two groups, the oral cleansing group (n = 16) or the noncleansing group (n = 16). Culture and polymerase chain reaction (PCR) methods were used to detect and enumerate pathogens. Oral cleansing was carried out with an electric toothbrush capable of automatically supplying and aspirating povidone-iodine solution before surgery, followed by rinsing twice a day after surgery. Cephazolin (3 g x day(-1)) was given to all patients for 5 days after surgery. The PCR detection rates of Streptococcus pneumoniae, Haemophilus influenzae, Pseudomonas aeruginosa, and Porphyromonas gingivalis in gargle samples before treatment were 87.5%, 68.8%, 53.1%, and 40.6%, respectively. Oral cleansing reduced the detection rates and numbers of methicillin-sensitive Staphylococcus species, S. pneumoniae, and H. influenzae. In contrast, there was no significant reduction of methicillin-resistant Staphylococcus species, S. pneumoniae, H. influenzae, or P. aeruginosa in subjects who underwent systemic cephazolin administration without oral cleansing. The combination of mechanical and chemical oral cleansing resulted in a significant reduction of potential respiratory pathogens in the oral cavity.

  11. Treatment of platelet concentrates with ultraviolet C light for pathogen reduction increases cytokine accumulation.

    Science.gov (United States)

    Sandgren, Per; Berlin, Gösta; Tynngård, Nahreen

    2016-06-01

    Pathogen reduction technologies use photoactive substances in combination with ultraviolet (UV) light to inactivate pathogens. A new method uses only UVC light for pathogen reduction. This study assesses the effects of UVC light treatment on cytokine release in platelet (PLT) concentrates (PCs). A PC with 35% plasma and 65% PLT additive solution (SSP+) was prepared from five buffy coats. Three such PCs were pooled and divided into 3 units. One unit was used as a nonirradiated control, the second was a gamma-irradiated control, and the third unit was treated with UVC light technology. Ten units of each type were investigated. Cytokine release was analyzed on Days 1, 5, and 7 of storage. Correlation between cytokines, PLT surface markers, and hemostatic properties was investigated. Swirling was well preserved and pH was above the reference limit of 6.4 during storage of PLTs in all groups. Cytokine levels increased during storage in all groups but to a larger degree in PCs treated with UVC light. Only weak correlation was found between cytokines and PLT surface markers (r  0.6) with the PLTs' ability to promote clot retraction. UVC treatment resulted in increased release from PLT alpha granules as evident by a higher cytokine release compared to nonirradiated and gamma-irradiated PCs. The clinical relevance of these findings needs to be further evaluated. © 2016 AABB.

  12. A survey of pathogen survival during municipal solid waste and manure treatment processes. Final report

    International Nuclear Information System (INIS)

    Ware, S.A.

    1980-08-01

    Municipal solid waste (MSW) and animal manures may contain microorganisms that can cause disease in man and animals. These pathogenic microorganisms include enteric bacteria, fungi, viruses, and human and animal parasites. This report summarizes and discusses various research findings documenting the extent of pathogen survival during MSW treatment. The technologies discussed are composting, incineration, landfill, and anaerobic digestion. There is also a limited examination of the use of the oxidation ditch as a means of animal manure stabilization. High gradient magnetic separation (HGMS), and gamma radiation sterilization are mentioned as future options, especially for animal waste management. Several standard methods for the sampling, concentration, and isolation of microorganisms from raw and treated solid waste are also summarized

  13. Research of pathogenic bacteria and bacteriophages in the residuals of wastewater treatment plants

    International Nuclear Information System (INIS)

    Mathlouthi, Soumaya

    2011-01-01

    The aim of this study is to find the pathogenic bacteria Listeria and Salmonella and to detect of bacterial (fecal coliforms) and viral indicators (bacteriophage) of fecal contamination in the residues of three sewage treatment plants in Greater Tunis: Charguia, Jdaida and Wardia. Three types of samples were analyzed: raw sewage, treated wastewater and sludge. The study showed the presence of pathogenic bacteria in some samples with a frequency of 7 pour cent for Listeria and 21 pour cent for Salmonella. However, none of these organisms has been detected in treated water of Jdaida and Chargia reflecting the efficiency of the purification process in these stations. Furthermore, all samples were positive for the presence of fecal coliforms and bacteriophages with important titles: up to 8.23 log10 (CFU/L) for coliforms and 8.36 log10 (pfu/L) for bacteriophages.

  14. The agricultural use of water treatment plant sludge: pathogens and antibiotic resistance

    Directory of Open Access Journals (Sweden)

    Ignacio Nadal Rocamora

    2015-12-01

    Full Text Available The use of water treatment plant sludge to restore degraded soils is customary agricultural practice, but it could be dangerous from the point of view of both health and the environment. A transient increase of either pathogenic or indicator microbial populations, whose persistence in time is variable and attributed to the characteristics of the soil (types of materials in the soil, any amendments (origin and treatments it has undergone or the weather (humidity and temperature mainly, has often been detected in soils treated with this kind of waste. Given their origin, water treatment plant sludges could lead to the transmission of a pathogens and b antibiotic-resistant microorganisms to human beings through the food chain and cause the spreading of antibiotic resistances as a result of their increase and persistence in the soil for variable periods of time. However, Spanish legislation regulating the use of sludges in the farming industry is based on a very restricted microbiological criterion. Thus, we believe better parameters should be established to appropriately inform of the state of health of soils treated with water treatment plant sludge, including aspects which are not presently assessed such as antibiotic resistance.

  15. The effectiveness of sewage treatment processes to remove faecal pathogens and antibiotic residues

    Science.gov (United States)

    Hendricks, Rahzia; Pool, Edmund John

    2012-01-01

    Pathogens and antibiotics enter the aquatic environment via sewage effluents and may pose a health risk to wild life and humans. The aim of this study was to determine the levels of faecal bacteria, and selected antibiotic residues in raw wastewater and treated sewage effluents from three different sewage treatment plants in the Western Cape, South Africa. Sewage treatment plant 1 and 2 use older technologies, while sewage treatment plant 3 has been upgraded and membrane technologies were incorporated in the treatment processes. Coliforms and Escherichia coli (E. coli) were used as bioindicators for faecal bacteria. A chromogenic test was used to screen for coliforms and E. coli. Fluoroquinolones and sulfamethoxazole are commonly used antibiotics and were selected to monitor the efficiency of sewage treatment processes for antibiotic removal. Enzyme Linked Immunosorbent Assays (ELISAs) were used to quantitate antibiotic residues in raw and treated sewage. Raw intake water at all treatment plants contained total coliforms and E. coli. High removal of E. coli by treatment processes was evident for treatment plant 2 and 3 only. Fluoroquinolones and sulfamethoxazole were detected in raw wastewater from all sewage treatment plants. Treatment processes at plant 1 did not reduce the fluoroquinolone concentration in treated sewage effluents. Treatment processes at plant 2 and 3 reduced the fluoroquinolone concentration by 21% and 31%, respectively. Treatment processes at plant 1 did not reduce the sulfamethoxazole concentration in treated sewage effluents. Treatment processes at plant 2 and 3 reduced sulfamethoxazole by 34% and 56%, respectively. This study showed that bacteria and antibiotic residues are still discharged into the environment. Further research needs to be undertaken to improve sewage treatment technologies, thereby producing a better quality treated sewage effluent. PMID:22242882

  16. Determination of Pathogens in Postoperative Wound Infection After Surgically Reduced Calcaneal Fractures and Implications for Prophylaxis and Treatment

    NARCIS (Netherlands)

    Backes, Manouk; Spijkerman, Ingrid J.; de Muinck-Keizer, Robert-Jan O.; Goslings, J. Carel; Schepers, Tim

    2018-01-01

    High rates of postoperative wound infection (POWI) have been reported after surgery for calcaneal fractures. This is a retrospective cohort study to determine the causative pathogens of these infections and subsequent treatment strategies. In addition, microbacterial growth from superficial wound

  17. UV-Heat Treatments for the Control of Foodborne Microbial Pathogens in Chicken Broth

    Directory of Open Access Journals (Sweden)

    M. Gouma

    2015-01-01

    Full Text Available This investigation established the process criteria for using UV-C light and mild heat (UV-H treatment to inactivate 5-Log10 cycles (performance criterion of common foodborne pathogen populations, Escherichia coli, Salmonella Typhimurium, Listeria monocytogenes, and Staphylococcus aureus, when inoculated in chicken broth. To define the target microorganism and the proper UV-H treatment conditions (including UV dose, treatment time, and temperature that would achieve the stated performance criterion, mathematical equations based on Geeraerd’s model were developed for each microorganism. For the sake of comparison, inactivation equations for heat treatments were also performed on the same chicken broth and for the same microorganisms. L. monocytogenes was the most UV-H resistant microorganism at all temperatures, requiring a UV dose between 6.10 J/mL (5.6 min and 2.26 J/mL (2.09 min to achieve 5-Log10 reductions. In comparison with UV treatments at room temperatures, the combination of UV and mild heat allowed both the UV dose and treatment time to be reduced by 30% and 63% at 55°C and 60°C, respectively. Compared to heat treatments, the UV-H process reduced the heating time for 5-Log10 reductions of all the investigated microorganisms in chicken broth from 20-fold to 2-fold when the operating temperature varied from 53 to 60°C.

  18. UASB followed by Sub-Surface Horizontal Flow Phytodepuration for the Treatment of the Sewage Generated by a Small Rural Community

    Directory of Open Access Journals (Sweden)

    Massimo Raboni

    2014-10-01

    Full Text Available The paper presents the results of an experimental process designed for the treatment of the sewage generated by a rural community located in the north-east of Brazil. The process consists of a preliminary mechanical treatment adopting coarse screens and grit traps, followed by a biological treatment in a UASB reactor and a sub-surface horizontal flow phytodepuration step. The use of a UASB reactor equipped with a top cover, as well as of the phytodepuration process employing a porous medium, showed to present important health advantages. In particular, there were no significant odor emissions and there was no evidence of the proliferation of insects and other disease vectors. The plant achieved the following mean abatement efficiencies: 92.9% for BOD5, 79.2% for COD and 94% for Suspended Solids. With regard to fecal indicators average efficiencies of 98.8% for fecal coliforms and 97.9% for fecal enterococci were achieved. The UASB reactor showed an important role in achieving this result. The research was also aimed at evaluating the optimal operating conditions for the UASB reactor in terms of hydraulic load and organic volumetric loading. The achieved results hence indicated that the process may be highly effective for small rural communities in tropical and sub-tropical areas.

  19. Application of Horizontal Subsurface Flow Constructed Wetland Systems for Domestic Wastewater Treatment: A Case Study, Kızılcaören

    Directory of Open Access Journals (Sweden)

    Fulya Aydın Temel

    2017-06-01

    Full Text Available Constructed wetlands (CWs are a green technology that have been used to treat several types of wastewater such as domestic, industrial, agricultural wastewaters and landfill leachate. CWs have several advantages included land intensive, low energy, easy operation and maintenance, low investment/operational costs, landscape esthetics, reuse of waters, and increased wildlife habitat compared to conventional systems. CWs are alternative treatment technologies due to these properties especially for rural settlements, industries, and hotels that are remote locations from central treatment plants. Physical, chemical, and biological treatment mechanisms can employ together in CWs. In the present study, two parallel full scale horizontal subsurface flow constructed wetlands were designed to treat domestic wastewater of Kızılcaören village in Samsun, Turkey. Juncus acutus and Cortaderia selloana were selected and the removal performance of each species were evaluated. During 7 months operation, the mean removal efficiencies of Juncus acutus and Cortaderia selloana were found as 33% and 32% for Mg2+; 62% and 55% for Fe2+; 64% and 56% for Fe3+; 46% and 37% for Cl2; 48% and 39% for total Cl2; 26% and 37% for Ca2+; 28% and 23% for SAA, respectively. Also, the Two-way ANOVA between groups was applied to determine any difference for the removal of all parameters between the plant types and months on the mean values of pollutants removal.

  20. Treatment of catheter-related bacteraemia with an antibiotic lock protocol: effect of bacterial pathogen.

    Science.gov (United States)

    Poole, Christopher V; Carlton, Donna; Bimbo, Lisa; Allon, Michael

    2004-05-01

    The standard therapy of dialysis catheter-related bacteraemia involves both systemic antibiotics and catheter replacement. We reported recently that instillation of an antibiotic lock (highly concentrated antibiotic solution) into the catheter lumen after dialysis sessions, in conjunction with systemic antibiotics, can successfully treat many episodes of catheter-related bacteraemia without requiring catheter removal. The present study evaluated whether the likelihood of achieving a cure with this protocol depends on the type of pathogen. This was a historically controlled interventional study of an antibiotic lock protocol for the treatment of catheter-related bacteraemia. We analysed prospectively the likelihood of clinical cure (fever resolution and negative surveillance cultures) with an antibiotic lock protocol among patients with dialysis catheter-related bacteraemia. In addition, infection-free catheter survival was evaluated for up to 150 days, and compared with that observed among patients managed with routine catheter replacement. Overall, the antibiotic lock protocol was successful in 33 of 47 infected patients (70%) with catheter-related bacteraemia. The likelihood of a clinical cure was 87% for Gram-negative infections, 75% for Staphylococcus epidermidis infections, and only 40% for Staphylococcus aureus infections (P = 0.04). The median infection-free catheter survival with the antibiotic lock protocol was longer than that observed among patients with routine catheter replacement (154 vs 71 days, P = 0.02). The clinical success of an antibiotic lock protocol in eradicating catheter-related bacteraemia while salvaging the catheter is highly dependent on the bacterial pathogen. Thus, the overall success rate in an individual dialysis programme will depend on the relative frequencies of different bacterial pathogens.

  1. Drug susceptibility and treatment response of common urinary tract infection pathogens in children.

    Science.gov (United States)

    Chen, Pei-Chun; Chang, Luan-Yin; Lu, Chun-Yi; Shao, Pei-Lan; Tsai, I-Jung; Tsau, Yong-Kwei; Lee, Ping-Ing; Chen, Jong-Ming; Hsueh, Po-Ren; Huang, Li-Min

    2014-12-01

    To document the trends of sensitivity and to find whether it is necessary to change antibiotics in selected patients according to the sensitivity test results in our clinical practice. We collected urine culture results from 0-18-year-old patients in the National Taiwan University Hospital from January 1, 2003 to October 31, 2012. Their medical chart was reviewed to identify true pathogens responsible for their urinary tract infection (UTI). We checked the percentage of susceptibility of these pathogens to ampicillin, amoxicillin-clavulanate (AMC), cefazolin, cefmetazole, ceftriaxone, gentamicin, and trimethoprim-sulfamethoxazole (TMP-SMX) according to the Clinical and Laboratory Standards Institute (CLSI) guideline. The extended-spectrum-beta-lactamases (ESBLs) rate was also checked. In addition, we reviewed the treatment response of different antibiotics. Defervescence within 48 hours after initial antibiotics use was considered responsive. A total of 7758 urine cultures positive for Escherichia coli infection were collected during the 10-year period. The E. coli cefazolin susceptibility rate was 62-73% during 2003-2010, but it dropped to 23% in 2011 and 28% in 2012 after the new CLSI guideline (M100-S21) was released. However, other antibiotics did not show a significant difference. In UTI caused by E. coli, on average, the sensitivity rates for various antibiotics were as follows: cefmetazole, 90%; ceftriaxone, 85%; gentamicin, 77%; AMC, 61%; TMP-SMX, 47%; and ampicillin, 20%. The ESBL rate was also found to increase (2-11%; p first-line antibiotics such as first-generation cephalosporin and/or gentamicin was 78%. The susceptibility of common urinary tract pathogens to cefazolin has decreased dramatically since 2010. This trend may be due to the change in the CLSI guideline. Although the susceptibility rate to first-line empirical antibiotics shows a decreasing trend, we found that the clinical response was acceptable for our first-line empirical antibiotics

  2. Pathogenic Dermatophytes Survive in Nail Lesions During Oral Terbinafine Treatment for Tinea Unguium.

    Science.gov (United States)

    Iwanaga, Tomoyuki; Ushigami, Tsuyoshi; Anzawa, Kazushi; Mochizuki, Takashi

    2017-08-01

    Tinea unguium caused by dermatophyte species are usually treated with oral antimycotic, terbinafine (TBF). To understand the mechanisms of improvement and recalcitrance of tinea unguium by oral TBF treatment, a method of quantifying dermatophyte viability in the nail was developed, and the viability of dermatophytes was analyzed in toenail lesions of 14 patients with KOH-positive tinea unguium treated with oral TBF 125 mg/day for up to 16 weeks. Mycological tests, including KOH examination and fungal culture, and targeted quantitative real-time PCR for internal transcribed spacer (ITS) region, including rRNA, were demonstrated at the initial visit and after 8 and 16 weeks of treatment. Assays in eight patients showed that average ITS DNA amount significantly decreased, to 44% at 8 weeks and 36% at 16 weeks compared with 100% at initial visit. No significant difference was observed between at 8 and 16 weeks, despite the TBF concentration in the nail supposedly more than 10-fold higher than the minimum fungicidal concentration for dermatophytes. This finding suggests the pathogenic dermatophytes in nail lesions could survive in a dormant form, such as arthroconidia, during oral TBF treatment. Both antimycotic activity and nail growth are important factors in treatment of tinea unguium.

  3. Pathogenic Enteric Viruses and Microbial Indicators during Secondary Treatment of Municipal Wastewater.

    Science.gov (United States)

    Montazeri, Naim; Goettert, Dorothee; Achberger, Eric C; Johnson, Crystal N; Prinyawiwatkul, Witoon; Janes, Marlene E

    2015-09-01

    Pathogenic enteric viruses are responsible for a wide range of infections in humans, with diverse symptoms. Raw and partially treated wastewaters are major sources of environmental contamination with enteric viruses. We monitored a municipal secondary wastewater treatment plant (New Orleans, LA) on a monthly basis for norovirus (NoV) GI and GII and enterovirus serotypes using multiplex reverse transcription-quantitative PCR (RT-qPCR) and microbial indicators of fecal contamination using standard plating methods. Densities of indicator bacteria (enterococci, fecal coliforms, and Escherichia coli) did not show monthly or seasonal patterns. Norovirus GII was more abundant than GI and, along with enterovirus serotypes, increased in influent during fall and spring. The highest NoV GI density in influent was in the fall, reaching an average of 4.0 log10 genomic copies/100 ml. Norovirus GI removal (0.95 log10) was lower than that for GII, enterovirus serotypes, and male-specific coliphages (1.48 log10) or for indicator bacteria (4.36 log10), suggesting higher resistance of viruses to treatment. Male-specific coliphages correlated with NoV GII densities in influent and effluent (r = 0.48 and 0.76, respectively) and monthly removal, indicating that male-specific coliphages can be more reliable than indicator bacteria to monitor norovirus GII load and microbial removal. Dominant norovirus genotypes were classified into three GI genotypes (GI.1, GI.3, and GI.4) and four GII genotypes (GII.3, GII.4, GII.13, and GII.21), dominated by GI.1 and GII.4 strains. Some of the seasonal and temporal patterns we observed in the pathogenic enteric viruses were different from those of epidemiological observations. Copyright © 2015, American Society for Microbiology. All Rights Reserved.

  4. Redox potential dynamics in a horizontal subsurface flow constructed wetland for wastewater treatment: Diel, seasonal ans spatial fluctuations

    Czech Academy of Sciences Publication Activity Database

    Dušek, Jiří; Picek, T.; Čížková, Hana

    2008-01-01

    Roč. 34, - (2008), s. 223-232 ISSN 0925-8574 Institutional research plan: CEZ:AV0Z60870520 Keywords : Redox potential * Redox prosesses * Phragmites australis * Wastewater treatment s * Constructed wetlands * Contunuous measurement Subject RIV: DJ - Water Pollution ; Quality Impact factor: 1.836, year: 2008

  5. Pathogens of potato (Solanum tuberosum L. tuber (Phytophtora infestans occurring in treatments with foliar fertilization

    Directory of Open Access Journals (Sweden)

    Bożena Cwalina-Ambroziak

    2012-10-01

    Full Text Available The paper presents the results of a three-year exact plot experiment (2008-2010 established in Bałcyny (NE Poland. Three potato cultivars were grown: medium-early ‘Adam’, medium-late ‘Pasja Pomorska’, and late ‘Ślęza’. The experimental factors were foliar fertilizers applied alone or in combination (Basfoliar 12-4-6, ADOB Mn, Solubor DF and two levels of soil mineral fertilization (N1P1K1-80 kg N × ha-1, 80 kg P × ha-1, 120 K × ha-1; N2P2K2-120 kg N × ha-1, 144 kg P × ha-1, 156 K × ha-1. The experimental materials comprised potato tubers. The symptoms of soft rot (Pectobacterium carotovorum subsp. carotovorum, late blight (Phytophthora infestans and dry rot (Fusarium spp. were evaluated in 5 kg potato samples, and were expressed as the percentage mass of infected tubers. The rates of common scab (Streptomyces scabies and black scurf (Rhizoctonia solani infection were estimated on 100 tubers collected randomly after harvest, according to a nine-point scale, and were presented as a percentage infection index. In the laboratory, fungi were isolated on PDA medium from potato tubers immediately after harvest and after five-month storage. The incidence of tuber diseases depended on potato cultivars affected. The severity of tuber diseases varied between treatments with two levels of NPK fertilization and foliar fertilization. The lowest number of Fusarium-infected tubers was obtained from treatments where three foliar fertilizers were applied in combination, which was confirmed by the lowest abundance of fungal isolates. More fungi were isolated from potato tubers after harvest than after storage, but pathogens were more frequently isolated from stored tubers. After harvest, the lowest number of pathogenic fungi was isolated from the tubers of cv. ‘Adam’ in the non-fertilized treatment, and after storage – from the tubers of the late cultivars in the treatment with three foliar fertilizers applied in combination.

  6. Nitrogen removal on recycling water process of wastewater treatment plant effluent using subsurface horizontal wetland with continuous feed

    Science.gov (United States)

    Tazkiaturrizki, T.; Soewondo, P.; Handajani, M.

    2018-01-01

    Recycling water is a generic term for water reclamation and reuse to solve the scarcity of water. Constructed wetlands have been recognized as providing many benefits for wastewater treatment including water supply and control by recycling water. This research aims to find the best condition to significantly remove nitrogen using constructed wetland for recycling water of Bojongsoang Waste Water Treatment Plan (WWTP) effluent. Using media of soil, sand, gravel, and vegetation (Typha latifolia and Scirpus grossus) with an aeration system, BOD and COD parameters have been remarkably reduced. On the contrary, the removal efficiency for nitrogen is only between 50-60%. Modifications were then conducted by three step of treatment, i.e., Step I is to remove BOD/COD using Typha latifolia with an aeration system, Step II is todecrease nitrogen using Scirpus grossus with/without aeration, and Step III isto complete the nitrogen removal with denitrification process by Glycine max without aeration. Results of the research show that the nitrogen removal has been successfully increased to a high efficiency between 80-99%. The combination of aeration system and vegetation greatly affects the nitrogen removal. The vegetation acts as the organic nitrogen consumer (plant uptake) for amino acids, nitrate, and ammonium as nutrition, as well as theoxygen supplier to the roots so that aerobic microsites are formed for ammonification microorganisms.

  7. Viability of Botryosphaeriaceae species pathogenic to grapevine after hot water treatment

    Directory of Open Access Journals (Sweden)

    Georgina ELENA

    2015-09-01

    Full Text Available The viability of eight species of Botryosphaeriaceae pathogenic to grapevine was studied after a hot water treatment (HWT in order to evaluate the feasibility of this technique as a potential tool to control these species during the grapevine propagation process. In a first trial (in vitro, mycelial plugs contained in Eppendorf tubes with sterile distilled water were subjected to different combinations of temperature (50–54°C and exposure time (15, 30 and 45 min in a hot water bath. Growth rates of treated mycelia were compared to untreated controls. Significant differences in survival and growth for all factors (species, temperature and time and their 2-way interactions were observed. Fungal survival and growth generally decreased with increasing temperatures and exposure times. Diplodia seriata, Neofusicoccum luteum, N. parvum and Spencermartinsia viticola were the most susceptible species to temperature, while Lasiodiplodia theobromae and N. vitifusiforme were the most tolerant. In a second trial (in planta, the fungi were inoculated into grapevine canes (Richter 110 rootstock. Inoculated canes were incubated at 25°C for 3 weeks to allow the fungi to colonize the wood and then subjected to HWT in the range of 50–53°C for 30 min, and survival of fungi after HWT was assessed. Survival of all species was sharply reduced after HWT of 30 min at 51°C and higher temperatures. At 50°C, Lasiodiplodia theobromae was the most tolerant species whereas N. luteum was the most susceptible. Results obtained in this study demonstrate the feasibility of controlling these pathogens by HWT in the nursery grapevine propagation process.

  8. Performance comparison and economics analysis of waste stabilization ponds and horizontal subsurface flow constructed wetlands treating domestic wastewater: a case study of the Juja sewage treatment works.

    Science.gov (United States)

    Mburu, Njenga; Tebitendwa, Sylvie M; van Bruggen, Johan J A; Rousseau, Diederik P L; Lens, Piet N L

    2013-10-15

    The performance, effluent quality, land area requirement, investment and operation costs of a full-scale waste stabilization pond (WSP) and a pilot scale horizontal subsurface flow constructed wetland (HSSF-CW) at Jomo Kenyatta University of Agriculture and Technology (JKUAT) were investigated between November 2010 to January 2011. Both systems gave comparable medium to high levels of organic matter and suspended solids removal. However, the WSP showed a better removal for Total Phosphorus (TP) and Ammonium (NH4(+)-N). Based on the population equivalent calculations, the land area requirement per person equivalent of the WSP system was 3 times the area that would be required for the HSSF-CW to treat the same amount of wastewater. The total annual cost estimates consisting of capital, operation and maintenance (O&M) costs were comparable for both systems. However, the evaluation of the capital cost of either system showed that it is largely influenced by the size of the population served, local cost of land and the construction materials involved. Hence, one can select either system in terms of treatment efficiency. When land is available other factor including the volume of wastewater or the investment, and O&M costs determine the technology selection. Copyright © 2013 Elsevier Ltd. All rights reserved.

  9. Enterobacter aerogenes and Enterobacter cloacae; versatile bacterial pathogens confronting antibiotic treatment

    Science.gov (United States)

    Davin-Regli, Anne; Pagès, Jean-Marie

    2015-01-01

    Enterobacter aerogenes and E. cloacae have been reported as important opportunistic and multiresistant bacterial pathogens for humans during the last three decades in hospital wards. These Gram-negative bacteria have been largely described during several outbreaks of hospital-acquired infections in Europe and particularly in France. The dissemination of Enterobacter sp. is associated with the presence of redundant regulatory cascades that efficiently control the membrane permeability ensuring the bacterial protection and the expression of detoxifying enzymes involved in antibiotic degradation/inactivation. In addition, these bacterial species are able to acquire numerous genetic mobile elements that strongly contribute to antibiotic resistance. Moreover, this particular fitness help them to colonize several environments and hosts and rapidly and efficiently adapt their metabolism and physiology to external conditions and environmental stresses. Enterobacter is a versatile bacterium able to promptly respond to the antibiotic treatment in the colonized patient. The balance of the prevalence, E. aerogenes versus E. cloacae, in the reported hospital infections during the last period, questions about the horizontal transmission of mobile elements containing antibiotic resistance genes, e.g., the efficacy of the exchange of resistance genes Klebsiella pneumoniae to Enterobacter sp. It is also important to mention the possible role of antibiotic use in the treatment of bacterial infectious diseases in this E. aerogenes/E. cloacae evolution. PMID:26042091

  10. Integrated Evaluation Concept to Assess the Efficacy of Advanced Wastewater Treatment Processes for the Elimination of Micropollutants and Pathogens.

    Science.gov (United States)

    Ternes, Thomas A; Prasse, Carsten; Eversloh, Christian Lütke; Knopp, Gregor; Cornel, Peter; Schulte-Oehlmann, Ulrike; Schwartz, Thomas; Alexander, Johannes; Seitz, Wolfram; Coors, Anja; Oehlmann, Jörg

    2017-01-03

    A multidisciplinary concept has been developed to compare advanced wastewater treatment processes for their efficacy of eliminating micropollutants and pathogens. The concept is based on (i) the removal/formation of selected indicator substances and their transformation products (TPs), (ii) the assessment of ecotoxicity via in vitro tests, and (iii) the removal of pathogens and antibiotic resistant bacteria. It includes substances passing biological wastewater treatment plants regulated or proposed to be regulated in the European Water Framework Directive, TPs formed in biological processes or during ozonation, agonistic/antagonistic endocrine activities, mutagenic/genotoxic activities, cytotoxic activities, further activities like neurotoxicity as well as antibiotics resistance genes, and taxonomic gene markers for pathogens. At a pilot plant, ozonation of conventionally treated wastewater resulted in the removal of micropollutants and pathogens and the reduction of estrogenic effects, whereas the in vitro mutagenicity increased. Subsequent post-treatment of the ozonated water by granular activated carbon (GAC) significantly reduced the mutagenic effects as well as the concentrations of remaining micropollutants, whereas this was not the case for biofiltration. The results demonstrate the suitability of the evaluation concept to assess processes of advanced wastewater treatment including ozonation and GAC by considering chemical, ecotoxicological, and microbiological parameters.

  11. Riboflavin-ultraviolet light pathogen reduction treatment does not impact the immunogenicity of murine red blood cells.

    Science.gov (United States)

    Tormey, Christopher A; Santhanakrishnan, Manjula; Smith, Nicole H; Liu, Jingchun; Marschner, Susanne; Goodrich, Raymond P; Hendrickson, Jeanne E

    2016-04-01

    Ultraviolet (UV) illumination/pathogen reduction effectively inactivates white blood cells (WBCs) in whole blood. Given that cotransfused WBCs may impact recipient immune responses, we hypothesized that pathogen reduction of whole blood may alter responses to RBC antigens. Transgenic mice expressing a model (HOD) antigen, authentic human (hGPA or KEL) antigens, or natural fluorescence (uGFP) on their RBCs were utilized as blood donors. Recipients were transfused with fresh whole blood to which riboflavin had been added or fresh whole blood treated by UV illumination/pathogen reduction treatment after the addition of riboflavin. Posttransfusion RBC recovery, survival, and alloimmunization were measured by flow cytometry. UV illumination/pathogen reduction treatment did not alter RBC antigen expression, and recipients of treated syngeneic RBCs had persistently negative direct antiglobulin tests. Greater than 75% of treated and untreated syngeneic RBCs were recovered 24 hours posttransfusion in all experiments, although alterations in the long-term posttransfusion survival of treated RBCs were observed. Treated and untreated KEL RBCs induced similar recipient alloimmune responses, with all recipients making anti-KEL glycoprotein immunoglobulins (p > 0.05). Alloimmune responses to treated HOD or hGPA RBCs were no different from untreated RBCs (p > 0.05). Pathogen inactivation treatment of fresh whole murine blood with riboflavin and UV illumination does not impact the rate or magnitude of RBC alloimmunization to three distinct RBC antigens. Further, UV illumination/pathogen reduction appears safe from an immunohematologic standpoint, with no immunogenic neoantigens detected on treated murine RBCs. Future studies with fresh and stored human RBCs are warranted to confirm these findings. © 2015 AABB.

  12. Fate of coliforms and pathogenic parasite in four full-scale sewage treatment systems in India.

    Science.gov (United States)

    Tyagi, Vinay Kumar; Sahoo, B K; Khursheed, Anwar; Kazmi, A A; Ahmad, Z; Chopra, A K

    2011-10-01

    The occurrence and removal of fecal indicators (total coliforms (TC), fecal coliforms (FC), fecal streptococci (FS)) and pathogens (helminthes eggs) were studied in various municipal wastewater treatment processes (UASB + FPU, ASP, EA, WSP). The reductions in TC and FC concentrations were usually between 2.0 and 2.5 log units in up-flow anaerobic sludge blanket reactor incorporated with final polishing unit (UASB + FPU). Almost similar reduction was observed in activated sludge process system (ASP) and waste stabilization ponds system (WSP), while it was log 3.0 in extended aeration system (EA). UASB + FPU and WSP systems were observed more efficient to reduce helminthes eggs at almost 100%, whereas only 97% removal was observed in case of ASP and EA system. In addition to monitoring of indicator organisms, turbidity, suspended solids (SS), and biochemical oxygen demand (BOD) were used as indirect measure of the potential presence of microorganisms. Interrelationship of BOD, SS, and turbidity with fecal indicator bacteria concentration in influent and effluent manifest that improvement of the microbiological quality of wastewater is strongly linked to the removal of BOD and SS.

  13. Electrical Subsurface Grounding Analysis

    International Nuclear Information System (INIS)

    J.M. Calle

    2000-01-01

    The purpose and objective of this analysis is to determine the present grounding requirements of the Exploratory Studies Facility (ESF) subsurface electrical system and to verify that the actual grounding system and devices satisfy the requirements

  14. Ceramic subsurface marker prototypes

    Energy Technology Data Exchange (ETDEWEB)

    Lukens, C.E. [Rockwell International Corp., Richland, WA (United States). Rockwell Hanford Operations

    1985-05-02

    The client submitted 5 sets of porcelain and stoneware subsurface (radioactive site) marker prototypes (31 markers each set). The following were determined: compressive strength, thermal shock resistance, thermal crazing resistance, alkali resistance, color retention, and chemical resistance.

  15. Deep subsurface microbial processes

    Science.gov (United States)

    Lovley, D.R.; Chapelle, F.H.

    1995-01-01

    Information on the microbiology of the deep subsurface is necessary in order to understand the factors controlling the rate and extent of the microbially catalyzed redox reactions that influence the geophysical properties of these environments. Furthermore, there is an increasing threat that deep aquifers, an important drinking water resource, may be contaminated by man's activities, and there is a need to predict the extent to which microbial activity may remediate such contamination. Metabolically active microorganisms can be recovered from a diversity of deep subsurface environments. The available evidence suggests that these microorganisms are responsible for catalyzing the oxidation of organic matter coupled to a variety of electron acceptors just as microorganisms do in surface sediments, but at much slower rates. The technical difficulties in aseptically sampling deep subsurface sediments and the fact that microbial processes in laboratory incubations of deep subsurface material often do not mimic in situ processes frequently necessitate that microbial activity in the deep subsurface be inferred through nonmicrobiological analyses of ground water. These approaches include measurements of dissolved H2, which can predict the predominant microbially catalyzed redox reactions in aquifers, as well as geochemical and groundwater flow modeling, which can be used to estimate the rates of microbial processes. Microorganisms recovered from the deep subsurface have the potential to affect the fate of toxic organics and inorganic contaminants in groundwater. Microbial activity also greatly influences 1 the chemistry of many pristine groundwaters and contributes to such phenomena as porosity development in carbonate aquifers, accumulation of undesirably high concentrations of dissolved iron, and production of methane and hydrogen sulfide. Although the last decade has seen a dramatic increase in interest in deep subsurface microbiology, in comparison with the study of

  16. Site Recommendation Subsurface Layout

    International Nuclear Information System (INIS)

    C.L. Linden

    2000-01-01

    The purpose of this analysis is to develop a Subsurface Facility layout that is capable of accommodating the statutory capacity of 70,000 metric tons of uranium (MTU), as well as an option to expand the inventory capacity, if authorized, to 97,000 MTU. The layout configuration also requires a degree of flexibility to accommodate potential changes in site conditions or program requirements. The objective of this analysis is to provide a conceptual design of the Subsurface Facility sufficient to support the development of the Subsurface Facility System Description Document (CRWMS M andO 2000e) and the ''Emplacement Drift System Description Document'' (CRWMS M andO 2000i). As well, this analysis provides input to the Site Recommendation Consideration Report. The scope of this analysis includes: (1) Evaluation of the existing facilities and their integration into the Subsurface Facility design. (2) Identification and incorporation of factors influencing Subsurface Facility design, such as geological constraints, thermal loading, constructibility, subsurface ventilation, drainage control, radiological considerations, and the Test and Evaluation Facilities. (3) Development of a layout showing an available area in the primary area sufficient to support both the waste inventories and individual layouts showing the emplacement area required for 70,000 MTU and, if authorized, 97,000 MTU

  17. Subsurface Contamination Control

    Energy Technology Data Exchange (ETDEWEB)

    Y. Yuan

    2001-12-12

    There are two objectives of this report, ''Subsurface Contamination Control''. The first is to provide a technical basis for recommending limiting radioactive contamination levels (LRCL) on the external surfaces of waste packages (WP) for acceptance into the subsurface repository. The second is to provide an evaluation of the magnitude of potential releases from a defective WP and the detectability of the released contents. The technical basis for deriving LRCL has been established in ''Retrieval Equipment and Strategy for Wp on Pallet'' (CRWMS M and O 2000g, 6.3.1). This report updates the derivation by incorporating the latest design information of the subsurface repository for site recommendation. The derived LRCL on the external surface of WPs, therefore, supercede that described in CRWMS M and O 2000g. The derived LRCL represent the average concentrations of contamination on the external surfaces of each WP that must not be exceeded before the WP is to be transported to the subsurface facility for emplacement. The evaluation of potential releases is necessary to control the potential contamination of the subsurface repository and to detect prematurely failed WPs. The detection of failed WPs is required in order to provide reasonable assurance that the integrity of each WP is intact prior to MGR closure. An emplaced WP may become breached due to manufacturing defects or improper weld combined with failure to detect the defect, by corrosion, or by mechanical penetration due to accidents or rockfall conditions. The breached WP may release its gaseous and volatile radionuclide content to the subsurface environment and result in contaminating the subsurface facility. The scope of this analysis is limited to radioactive contaminants resulting from breached WPs during the preclosure period of the subsurface repository. This report: (1) documents a method for deriving LRCL on the external surfaces of WP for acceptance into the

  18. A gaseous acetic acid treatment to disinfect fenugreek seeds and black pepper inoculated with pathogenic and spoilage bacteria.

    Science.gov (United States)

    Nei, Daisuke; Enomoto, Katsuyoshi; Nakamura, Nobutaka

    2015-08-01

    Contamination of spices by pathogenic and/or spoilage bacteria can be deleterious to consumer's health and cause deterioration of foods, and inactivation of such bacteria is necessary for the food industry. The present study examined the effect of gaseous acetic acid treatment in reducing Escherichia coli O157:H7, Salmonella Enteritidis and Bacillus subtilis populations inoculated on fenugreek seeds and black pepper. Treatment with gaseous acetic acid at 0.3 mmol/L, 0.6 mmol/L and 4.7 mmol/L for 1-3 h significantly reduced the populations of E. coli O157:H7 and Salmonella Enteritidis on black pepper and fenugreek seeds at 55 °C (p pathogens than the treatment at 0.3 mmol/L. An approximately 5.0 log reduction was obtained after 3 h of treatment with 4.7 mmol/L acetic acid. No significant reductions in the population of B. subtilis spores inoculated on fenugreek seeds and black pepper were obtained after the gas treatments at 0.3 mmol/L or 0.6 mmol/L (p > 0.05). However, the gas treatment at 4.7 mmol/L significantly reduced B. subtilis spores (p < 0.05), and 4.0 log CFU/g and 3.5 log CFU/g reductions on fenugreek seeds and black pepper, respectively, were obtained after 3 h of treatment. Copyright © 2015 Elsevier Ltd. All rights reserved.

  19. Two Theobroma cacao genotypes with contrasting pathogen tolerance show aberrant transcriptional and ROS responses after salicylic acid treatment.

    Science.gov (United States)

    Fister, Andrew S; O'Neil, Shawn T; Shi, Zi; Zhang, Yufan; Tyler, Brett M; Guiltinan, Mark J; Maximova, Siela N

    2015-10-01

    Understanding the genetic basis of pathogen susceptibility in various crop plants is crucial to increasing the stability of food, feed, and fuel production. Varietal differences in defence responses provide insights into the mechanisms of resistance and are a key resource for plant breeders. To explore the role of salicylic acid in the regulation of defence in cacao, we demonstrated that SA treatment decreased susceptibility to a pod rot pathogen, Phytophthora tropicalis in two genotypes, Scavina 6 and Imperial College Selection 1, which differ in their resistance to several agriculturally important pathogens. Transient overexpression of TcNPR1, a major transcriptional regulator of the SA-dependent plant immune system, also increased pathogen tolerance in cacao leaves. To explore further the genetic basis of resistance in cacao, we used microarrays to measure gene expression profiles after salicylic acid (SA) treatment in these two cacao genotypes. The two genotypes displayed distinct transcriptional responses to SA. Unexpectedly, the expression profile of the susceptible genotype ICS1 included a larger number of pathogenesis-related genes that were induced by SA at 24h after treatment, whereas genes encoding many chloroplast and mitochondrial proteins implicated in reactive oxygen species production were up-regulated in the resistant genotype, Sca6. Sca6 accumulated significantly more superoxide at 24h after treatment of leaves with SA. These experiments revealed critical insights regarding the molecular differences between cacao varieties, which will allow a better understanding of defence mechanisms to help guide breeding programmes. © The Author 2015. Published by Oxford University Press on behalf of the Society for Experimental Biology.

  20. A study on the effects of different hydraulic loading rates (HLR) on pollutant removal efficiency of subsurface horizontal-flow constructed wetlands used for treatment of domestic wastewaters.

    Science.gov (United States)

    Çakir, Recep; Gidirislioglu, Ali; Çebi, Ulviye

    2015-12-01

    The research into the treatment of domestic wastewaters originating from Büyükdöllük village in Edirne Province was carried out over a 3 year experimental period. The wastewaters of the settlement were treated using a constructed wetland with subsurface horizontal flow, and the effects of different hydraulic loading levels on removal efficiency were studied. In order to achieve this goal, three equal chambers (ponds) of 300 m(2) each were constructed and planted with Phragmites australis. Each of the chambers was loaded with domestic wastewater with average flow discharge creating hydraulic loading rates of 0. m(3) day(-1) m(-2); 0.075 m(3) day(-1) m(-2) and 0.125 m(3) day(-1) m(-2), respectively. According to the results of the study, the inlet levels of the pollutant parameters with carbon origin in the water samples taken from the system entrance are high and the average values for three years are respectively: Biological Oxygen Demand, BOD5 -324.5 mg L(-1); Chemical Oxygen Demand, COD -484,0 mg L(-1); suspended solids (TSS) -147.3 mg L(-1) and Oil and Grease -0.123 mg L(-1). It was also determined that the removal rates of the system were closely dependent on the applied hydraulic loading levels and the highest removal rates of 64.9%, 62.5%, 86.3% and 80.34% for BOD5, COD, TSS and Oil and Grease, respectively, were determined in the pond with a hydraulic loading rate of 0.050 m(3) day(-1) m(-2). Lower removal of 57.9%, 55.5%, 81.4% and 74.5% for BOD5, COD, TSS and Oil and Grease were recorded in the pond with a hydraulic loading rate of 0.075 m(3) day(-1) m(-2); and these values were 49.1%, 47.8%, 70.9% and 62.1% for the pond with a hydraulic loading rate of 0.125 m(3) day(-1) m(-2). High removal rates were also recorded for the other investigated pollution parameters. Copyright © 2015 Elsevier Ltd. All rights reserved.

  1. The Serpentinite Subsurface Microbiome

    Science.gov (United States)

    Schrenk, M. O.; Nelson, B. Y.; Brazelton, W. J.

    2011-12-01

    Microbial habitats hosted in ultramafic rocks constitute substantial, globally-distributed portions of the subsurface biosphere, occurring both on the continents and beneath the seafloor. The aqueous alteration of ultramafics, in a process known as serpentinization, creates energy rich, high pH conditions, with low concentrations of inorganic carbon which place fundamental constraints upon microbial metabolism and physiology. Despite their importance, very few studies have attempted to directly access and quantify microbial activities and distributions in the serpentinite subsurface microbiome. We have initiated microbiological studies of subsurface seeps and rocks at three separate continental sites of serpentinization in Newfoundland, Italy, and California and compared these results to previous analyses of the Lost City field, near the Mid-Atlantic Ridge. In all cases, microbial cell densities in seep fluids are extremely low, ranging from approximately 100,000 to less than 1,000 cells per milliliter. Culture-independent analyses of 16S rRNA genes revealed low-diversity microbial communities related to Gram-positive Firmicutes and hydrogen-oxidizing bacteria. Interestingly, unlike Lost City, there has been little evidence for significant archaeal populations in the continental subsurface to date. Culturing studies at the sites yielded numerous alkaliphilic isolates on nutrient-rich agar and putative iron-reducing bacteria in anaerobic incubations, many of which are related to known alkaliphilic and subsurface isolates. Finally, metagenomic data reinforce the culturing results, indicating the presence of genes associated with organotrophy, hydrogen oxidation, and iron reduction in seep fluid samples. Our data provide insight into the lifestyles of serpentinite subsurface microbial populations and targets for future quantitative exploration using both biochemical and geochemical approaches.

  2. Review of pathogen treatment reductions for onsite non-potable reuse of alternative source waters

    Science.gov (United States)

    Communities face a challenge when implementing onsite reuse of collected waters for non-potable purposes given the lack of national microbial standards. Quantitative Microbial Risk Assessment (QMRA) can be used to predict the pathogen risks associated with the non-potable reuse o...

  3. Foliar treatments with Gaultheria procumbens essential oil induce defence responses and resistance against a fungal pathogen in Arabidopsis

    Directory of Open Access Journals (Sweden)

    Sophie eVergnes

    2014-09-01

    Full Text Available Essential oil from Gaultheria procumbens is mainly composed of methylsalicylate (>96%, a compound which can be metabolized in plant tissues to salicylic acid, a phytohormone inducing plant immunity against microbial pathogens. The potential use of G. procumbens essential oil as a biocontrol agent was evaluated on the model plant Arabidopsis thaliana. Expression of a selection of defence genes was detected 1, 6 and 24 hours after essential oil treatment (0.1 ml/L using a high-throughput qPCR-based microfluidic technology. Control treatments included methyl jasmonate and a commercialized salicylic acid analog, benzo(1,2,3-thiadiazole-7carbothiolic acid (BTH. Strong induction of defence markers known to be regulated by the salicylic acid pathway was observed after the treatment with G. procumbens essential oil. Treatment induced the accumulation of total salicylic acid in the wild -type Arabidopsis line Col-0 and analysis of the Arabidopsis line sid2, mutated in a salicylic acid biosynthetic gene, revealed that approximately 30% of methylsalicylate sprayed on the leaves penetrated inside plant tissues and was demethylated by endogenous esterases. Induction of plant resistance by G. procumbens essential oil was tested following inoculation with a GFP-expressing strain of the Arabidopsis fungal pathogen Colletotrichum higginsianum. Flurorescence measurement of infected tissues revealed that treatments led to a strong reduction (60% of pathogen development and that the efficacy of the G. procumbens essential oil was similar to the commercial product BION®. Together, these results show that the G. procubens essential oil is a natural source of methylsalicylate which can be formulated to develop new biocontrol products.

  4. SUBSURFACE EMPLACEMENT TRANSPORTATION SYSTEM

    International Nuclear Information System (INIS)

    Wilson, T.; Novotny, R.

    1999-01-01

    The objective of this analysis is to identify issues and criteria that apply to the design of the Subsurface Emplacement Transportation System (SET). The SET consists of the track used by the waste package handling equipment, the conductors and related equipment used to supply electrical power to that equipment, and the instrumentation and controls used to monitor and operate those track and power supply systems. Major considerations of this analysis include: (1) Operational life of the SET; (2) Geometric constraints on the track layout; (3) Operating loads on the track; (4) Environmentally induced loads on the track; (5) Power supply (electrification) requirements; and (6) Instrumentation and control requirements. This analysis will provide the basis for development of the system description document (SDD) for the SET. This analysis also defines the interfaces that need to be considered in the design of the SET. These interfaces include, but are not limited to, the following: (1) Waste handling building; (2) Monitored Geologic Repository (MGR) surface site layout; (3) Waste Emplacement System (WES); (4) Waste Retrieval System (WRS); (5) Ground Control System (GCS); (6) Ex-Container System (XCS); (7) Subsurface Electrical Distribution System (SED); (8) MGR Operations Monitoring and Control System (OMC); (9) Subsurface Facility System (SFS); (10) Subsurface Fire Protection System (SFR); (11) Performance Confirmation Emplacement Drift Monitoring System (PCM); and (12) Backfill Emplacement System (BES)

  5. Effects of combined treatments of irradiation and antimicrobial coatings on reduction of food pathogens in broccoli florets

    International Nuclear Information System (INIS)

    Takala, P.N.; Salmieri, S.; Vu, K.D.; Lacroix, M.

    2011-01-01

    The effect of combined treatment of antimicrobial coatings and γ-radiation on reduction of food pathogens such as Listeria monocytogenes, Escherichia coli, and Salmonella Typhimurium was evaluated in broccoli florets. Broccoli florets were inoculated with pathogenic bacteria at 10 6 CFU/g. Inoculated florets were then coated with methylcellulose-based coating containing various mixtures of antimicrobial agents: organic acids (OAs) plus lactic acid bacteria metabolites (LABs), OA plus citrus extract (CE), OA plus CE plus spice mixture (SM), and OA plus rosemary extract (RE). Coated florets were irradiated with various doses (0-3.3 kGy), and microbial analyses were used to calculate the D 10 value and radiosensitive relative. The coating containing OA plus CE was the most effective formulation for increasing the sensitization of Escherichia coli by 2.4 times as compared to the control without the antimicrobial coating. For Salmonella Typhimurium, coating containing OA plus LAB was the most effective formulation, increasing radiosensitivity by 2.4 times as well. All antimicrobial coatings had almost the same effect of increasing the sensitivity of Listeria monocytogenes (from 1.31 to 1.45 times) to γ-irradiation. - Highlights: → Demonstrate scientifically the synergistic effect of the combined treatment of gamma-irradiation and natural antimicrobial coating in reduction of food pathogens in broccoli. → The coating containing organic acids plus citrus extract was the most efficient formulation for increasing the sensitization of E. coli by 2.40 times as compared to the control. → The coating containing organic acids plus lactic acid bacteria metabolites was the most effective formulation causing the sensitization of S. Typhimurium to γ-irradiation by 2.4 times. → Potential in application of developed formulations to protect food products against food pathogens.

  6. Effects of combined treatments of irradiation and antimicrobial coatings on reduction of food pathogens in broccoli florets

    Energy Technology Data Exchange (ETDEWEB)

    Takala, P.N.; Salmieri, S.; Vu, K.D. [INRS-Institut Armand-Frappier, Research Laboratories in Sciences Applied to Food, Canadian Irradiation Centre, 531, Blvd des Prairies, Laval, QC, H7V 1B7 (Canada); Lacroix, M., E-mail: Monique.Lacroix@iaf.inrs.ca [INRS-Institut Armand-Frappier, Research Laboratories in Sciences Applied to Food, Canadian Irradiation Centre, 531, Blvd des Prairies, Laval, QC, H7V 1B7 (Canada)

    2011-12-15

    The effect of combined treatment of antimicrobial coatings and {gamma}-radiation on reduction of food pathogens such as Listeria monocytogenes, Escherichia coli, and Salmonella Typhimurium was evaluated in broccoli florets. Broccoli florets were inoculated with pathogenic bacteria at 10{sup 6} CFU/g. Inoculated florets were then coated with methylcellulose-based coating containing various mixtures of antimicrobial agents: organic acids (OAs) plus lactic acid bacteria metabolites (LABs), OA plus citrus extract (CE), OA plus CE plus spice mixture (SM), and OA plus rosemary extract (RE). Coated florets were irradiated with various doses (0-3.3 kGy), and microbial analyses were used to calculate the D{sub 10} value and radiosensitive relative. The coating containing OA plus CE was the most effective formulation for increasing the sensitization of Escherichia coli by 2.4 times as compared to the control without the antimicrobial coating. For Salmonella Typhimurium, coating containing OA plus LAB was the most effective formulation, increasing radiosensitivity by 2.4 times as well. All antimicrobial coatings had almost the same effect of increasing the sensitivity of Listeria monocytogenes (from 1.31 to 1.45 times) to {gamma}-irradiation. - Highlights: > Demonstrate scientifically the synergistic effect of the combined treatment of gamma-irradiation and natural antimicrobial coating in reduction of food pathogens in broccoli. > The coating containing organic acids plus citrus extract was the most efficient formulation for increasing the sensitization of E. coli by 2.40 times as compared to the control. > The coating containing organic acids plus lactic acid bacteria metabolites was the most effective formulation causing the sensitization of S. Typhimurium to {gamma}-irradiation by 2.4 times. > Potential in application of developed formulations to protect food products against food pathogens.

  7. DEMONSTRATION BULLETIN: SUBSURFACE VOLATILIZATION AND VENTILATION SYSTEM - BROWN & ROOT ENVIRONMENTAL

    Science.gov (United States)

    The Subsurface Volatilization and Ventilation System (SVVS*) is an in-situ vacuum extraction/air sparging and bioremediation technology for the treatment of subsurface organic contamination in soil and groundwater. The technology, developed by Billings and Associates, Inc., and o...

  8. Combination treatment of chlorine dioxide gas and aerosolized sanitizer for inactivating foodborne pathogens on spinach leaves and tomatoes.

    Science.gov (United States)

    Park, Sang-Hyun; Kang, Dong-Hyun

    2015-08-17

    The objective of this study was to evaluate the antimicrobial effect of chlorine dioxide (ClO2) gas and aerosolized sanitizer, when applied alone or in combination, on the survival of Escherichia coli O157:H7, Salmonella Typhimurium, and Listeria monocytogenes inoculated onto spinach leaves and tomato surfaces. Spinach leaves and tomatoes were inoculated with a cocktail of three strains each of the three foodborne pathogens. ClO2 gas (5 or 10 ppmv) and aerosolized peracetic acid (PAA) (80 ppm) were applied alone or in combination for 20 min. Exposure to 10 ppmv of ClO2 gas for 20 min resulted in 3.4, 3.3, and 3.4 log reductions of E. coli O157:H7, S. Typhimurium, and L. monocytogenes on spinach leaves, respectively. Treatment with 80 ppm of aerosolized PAA for 20 min caused 2.3, 1.9, and 0.8 log reductions of E. coli O157:H7, S. Typhimurium, and L. monocytogenes, respectively. Combined treatment of ClO2 gas (10 ppmv) and aerosolized PAA (80 ppm) for 20 min caused 5.4, 5.1, and 4.1 log reductions of E. coli O157:H7, S. Typhimurium, and L. monocytogenes, respectively. E. coli O157:H7, S. Typhimurium, and L. monocytogenes on tomatoes experienced similar reduction patterns to those on spinach leaves. As treatment time increased, most combinations of ClO2 gas and aerosolized PAA showed additive effects in the inactivation of the three pathogens. Combined treatment of ClO2 gas and aerosolized PAA produced injured cells of three pathogens on spinach leaves while generally did not produce injured cells of these pathogens on tomatoes. Combined treatment of ClO2 gas (10 ppmv) and aerosolized PAA (80 ppm) did not significantly (p>0.05) affect the color and texture of samples during 7 days of storage. Copyright © 2015. Published by Elsevier B.V.

  9. Detection of pathogenic bacteria in skin lesions of patients with chiclero's ulcer: reluctant response to antimonial treatment

    Directory of Open Access Journals (Sweden)

    Isaac-Márquez Angélica Patricia

    2003-01-01

    Full Text Available We investigated the bacterial flora present in skin lesions of patients with chiclero's ulcer from the Yucatan peninsula of Mexico using conventional culture methods (11 patients, and an immunocolorimetric detection of pathogenic Streptococcus pyogenes (15 patients. Prevalence of bacteria isolated by culture methods was 90.9% (10/11. We cultured, from chiclero's ulcers (60%, pathogenic bacterial such as Staphylococcus aureus (20%, S. pyogenes (1.6%, Pseudomonas aeruginosa (1.6%, Morganella morganii (1.6%, and opportunist pathogenic bacteria such as Klebsiella spp. (20.0%, Enterobacter spp. (20%, and Enterococcus spp. (20%. We also cultured coagulase-negative staphylococci in 40% (4/10 of the remaining patients. Micrococcus spp. and coagulase-negative staphylococci constituted the bacterial genuses more frequently isolated in the normal skin of patients with chiclero's ulcer and healthy individuals used as controls. We also undertook another study to find out the presence of S. pyogenes by an immunocolorimetric assay. This study indicated that 60% (9/15 of the ulcerated lesions, but not normal controls, were contaminated with S. pyogenes. Importantly, individuals with purulent secretion and holding concomitant infections with S. pyogenes, S. aureus, P. aeruginosa, M. morganii, and E. durans took longer to heal Leishmania (L. mexicana infections treated with antimonial drugs. Our results suggest the need to eliminate bacterial purulent infections, by antibiotic treatment, before starting antimonial administration to patients with chiclero's ulcer.

  10. Subsurface contaminants focus area

    International Nuclear Information System (INIS)

    1996-08-01

    The US Department of Enregy (DOE) Subsurface Contaminants Focus Area is developing technologies to address environmental problems associated with hazardous and radioactive contaminants in soil and groundwater that exist throughout the DOE complex, including radionuclides, heavy metals; and dense non-aqueous phase liquids (DNAPLs). More than 5,700 known DOE groundwater plumes have contaminated over 600 billion gallons of water and 200 million cubic meters of soil. Migration of these plumes threatens local and regional water sources, and in some cases has already adversely impacted off-site rsources. In addition, the Subsurface Contaminants Focus Area is responsible for supplying technologies for the remediation of numerous landfills at DOE facilities. These landfills are estimated to contain over 3 million cubic meters of radioactive and hazardous buried Technology developed within this specialty area will provide efective methods to contain contaminant plumes and new or alternative technologies for development of in situ technologies to minimize waste disposal costs and potential worker exposure by treating plumes in place. While addressing contaminant plumes emanating from DOE landfills, the Subsurface Contaminants Focus Area is also working to develop new or alternative technologies for the in situ stabilization, and nonintrusive characterization of these disposal sites

  11. Subsurface contaminants focus area

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1996-08-01

    The US Department of Enregy (DOE) Subsurface Contaminants Focus Area is developing technologies to address environmental problems associated with hazardous and radioactive contaminants in soil and groundwater that exist throughout the DOE complex, including radionuclides, heavy metals; and dense non-aqueous phase liquids (DNAPLs). More than 5,700 known DOE groundwater plumes have contaminated over 600 billion gallons of water and 200 million cubic meters of soil. Migration of these plumes threatens local and regional water sources, and in some cases has already adversely impacted off-site rsources. In addition, the Subsurface Contaminants Focus Area is responsible for supplying technologies for the remediation of numerous landfills at DOE facilities. These landfills are estimated to contain over 3 million cubic meters of radioactive and hazardous buried Technology developed within this specialty area will provide efective methods to contain contaminant plumes and new or alternative technologies for development of in situ technologies to minimize waste disposal costs and potential worker exposure by treating plumes in place. While addressing contaminant plumes emanating from DOE landfills, the Subsurface Contaminants Focus Area is also working to develop new or alternative technologies for the in situ stabilization, and nonintrusive characterization of these disposal sites.

  12. Effect of Gamma Irradiation and Its Convergent Treatments on Lily Leaf Blight Pathogen, Botrytis elliptica, and the Disease Development

    Directory of Open Access Journals (Sweden)

    Ji-Hoon Kim

    2014-06-01

    Full Text Available Gamma irradiation and its convergence with nano-silver particles and sodium dichloroisocyanurate (NaDCC were investigated to inhibit germination and mycelial growth of Botrytis elliptica, the pathogen of lily leaf blight. In addition, the same treatments were studied on the process of disease development with detached leaf of lily cv. Siberia. Spray inoculation, which is closer to natural infection than wound inoculation, can be a way to investigate infection ability of the treated pathogen. The irradiating dose required to reduce the population by 90%, D10, was 526 Gy irradiating with 0-2000 Gy gamma ray on the conidial suspension as well as the growing mycelia. Even at 2000 Gy, the mycelium was not killed but just delayed its growth at 1–2 days behind. Convergent treatment with 40 mg/l of NaDCC just before 200 Gy gamma irradiation was the best way to decrease the conidial germination about 1/1000 times. The control values of gamma irradiation were 23% and 19.5% at wound inoculation and spray inoculation, respectively. On wound-inoculation, the control value of NaDCC only was 89%, and that of NaDCC convergent with 200 Gy gamma irradiation was 32%. On sprayinoculation, the highest control value was NaDCC at 50%, and that of NaDCC convergent with gamma irradiation was 24%.

  13. Microencapsulated antimicrobial compounds as a means to enhance electron beam irradiation treatment for inactivation of pathogens on fresh spinach leaves.

    Science.gov (United States)

    Gomes, Carmen; Moreira, Rosana G; Castell-Perez, Elena

    2011-08-01

    eliminate internalized pathogens. Ionizing radiation is a viable alternative for eliminating pathogens; however, the dose required to inactivate these pathogens is often too high to be tolerated by the fresh produce without undesirable quality changes. This study uses natural antimicrobial ingredients as radiosensitizers. These ingredients were encapsulated and applied to fresh produce that was subsequently irradiated. The process results in high level of microorganism inactivation using lower doses than the conventional irradiation treatments. © 2011 Institute of Food Technologists®

  14. Influence of hydraulic retention time and plant species on performance of mesocosm subsurface constructed wetlands during municipal wastewater treatment in super-arid areas.

    Science.gov (United States)

    Vera, Ismael; Verdejo, Nathaly; Chávez, Wladimir; Jorquera, Camila; Olave, Jorge

    2016-01-28

    A constructed wetland (CW) in arid areas requires special knowledge given the particular climatic conditions. Among other aspects, the Hydraulic Retention Time (HRT) and plant species may be two important design parameters in hyper- and super-arid areas. Therefore, the study aimed to evaluate the influence of both variables in the application of CW in super-arid areas. Two HRT, 3.5 d and 7 d, and plant species classified by their origin: (a) native, Festuca Orthopylla, Cortaderia atacamensis and Schoenoplectus americanus, and (b) foreign, Cyperus papyrus, were evaluated in four Mesocosm Constructed Wetlands (MCW) operated in a super-arid area. The results showed that the HRT significantly increased (α 0.05) on the EC of the effluents. These results suggest that Schoenoplectus americanus would be an ideal candidate species for use in CW with subsurface flow in super-arid areas, with HRT varying between 3.5 d and 7 d.

  15. Broadband Counter-Wound Spiral Antenna for Subsurface Radar Applications

    National Research Council Canada - National Science Library

    Yong, Lim

    2003-01-01

    .... An overall design strategy is outlined, together with a more detailed treatment of the ground-penetrating radar supersystems and topics which are relevant to effective subsurface radar operation...

  16. Milk from transgenic goat expressing human lysozyme for recovery and treatment of gastrointestinal pathogens.

    Science.gov (United States)

    Carneiro, Igor de Sá; Menezes, José Nilson Rodrigues de; Maia, Julyana Almeida; Miranda, André Marrocos; Oliveira, Victor Bruno Soares de; Murray, James D; Maga, Elizabeth A; Bertolini, Marcelo; Bertolini, Luciana Relly

    2018-01-15

    Lysozyme is an important non-specific immune protein in human milk, modulating the immune response against bacterial infections. The aim of this study was to characterize the milk of a transgenic goat expressing a recombinant human lysozyme (rhLZ) in the milk, also testing the in vitro antibacterial activity of the rhLZ milk against pathogens of the gastrointestinal tract. Milk samples collected from Tg and non-transgenic goats (nTg) from the 3rd to the 11th week of lactation were submitted to physicochemical analyses, rhLZ semi-quantification, and to rhLZ antimicrobial activity against Micrococcus luteus, Shiguella sonnei and Enterococcus faecalis. Viability and cell migration were studied in ileum epithelial cells (IEC-18) in absence or presence of E. faecalis, Staphylococcus aureus, Escherichia coli (EPEC) and S. sonnei. The expression of ZO-1 and IL-6 genes was evaluated in IEC-18 to evaluate the effect of rhLZ milk on intestinal barrier function and intestinal inflammation. Physicochemical parameters between goat Tg and nTg milk were similar and within normal values for human consumption, with hLZ concentrations being similar between Tg (224μg/mL) and human (226μg/mL) milk. The Tg milk had bactericidal activity against M. luteus, no bactericidal effect on S. sonnei, and relative to discrete sensitivity against E. feacalis than controls. Better migrating parameters were observed in cells in culture with nTg and Tg than controls. In the presence of pathogens, the Tg milk promoted improved migrating parameters than controls, except for S. sonnei, with lower cell numbers in the presence of nTg samples and E. faecalis and S. sonnei. No differences in ZO-1 relative expression patterns were observed in cultured cells, with increased expression in IL-6 in cells exposed to nTg milk than controls, with the Tg group being similar to all groups. In conclusion, goat milk containing rhLZ demonstrated valid evidence for its potential use as a nutraceutical for improvement

  17. Control of seed-borne pathogens on legumes by microbial and other alternative seed treatments

    NARCIS (Netherlands)

    Tinivella, F.; Hirata, L.M.; Celan, M.A.; Wright, S.A.I.; Amein, T.; Schmitt, A.; Wolf, van der J.M.; Koch, E.; Groot, S.P.C.

    2009-01-01

    Greenhouse trials were carried out in order to test the efficacy of different seed treatments as alternatives to chemicals against Colletotrichum lindemuthianum cause of anthracnose on bean and Ascochyta spp. cause of Ascochyta blights on pea, respectively. Resistance inducers, commercially

  18. Treatment of blood with a pathogen reduction technology using ultraviolet light and riboflavin inactivates Ebola virus in vitro.

    Science.gov (United States)

    Cap, Andrew P; Pidcoke, Heather F; Keil, Shawn D; Staples, Hilary M; Anantpadma, Manu; Carrion, Ricardo; Davey, Robert A; Frazer-Abel, Ashley; Taylor, Audra L; Gonzales, Richard; Patterson, Jean L; Goodrich, Raymond P

    2016-03-01

    Transfusion of plasma from recovered patients after Ebolavirus (EBOV) infection, typically called "convalescent plasma," is an effective treatment for active disease available in endemic areas, but carries the risk of introducing other pathogens, including other strains of EBOV. A pathogen reduction technology using ultraviolet light and riboflavin (UV+RB) is effective against multiple enveloped, negative-sense, single-stranded RNA viruses that are similar in structure to EBOV. We hypothesized that UV+RB is effective against EBOV in blood products without activating complement or reducing protective immunoglobulin titers that are important for the treatment of Ebola virus disease (EVD). Four in vitro experiments were conducted to evaluate effects of UV+RB on green fluorescent protein EBOV (EBOV-GFP), wild-type EBOV in serum, and whole blood, respectively, and on immunoglobulins and complement in plasma. Initial titers for Experiments 1 to 3 were 4.21 log GFP units/mL, 4.96 log infectious units/mL, and 4.23 log plaque-forming units/mL. Conditions tested in the first three experiments included the following: 1-EBOV-GFP plus UV+RB; 2-EBOV-GFP plus RB only; 3-EBOV-GFP plus UV only; 4-EBOV-GFP without RB or UV; 5-virus-free control plus UV only; and 6-virus-free control without RB or UV. UV+RB reduced EBOV titers to nondetectable levels in both nonhuman primate serum (≥2.8- to 3.2-log reduction) and human whole blood (≥3.0-log reduction) without decreasing protective antibody titers in human plasma. Our in vitro results demonstrate that the UV+RB treatment efficiently reduces EBOV titers to below limits of detection in both serum and whole blood. In vivo testing to determine whether UV+RB can improve convalescent blood product safety is indicated. © 2016 AABB.

  19. Serratospiculosis in falcons from Kuwait: incidence, pathogenicity and treatment with melarsomine and ivermectin

    Directory of Open Access Journals (Sweden)

    Tarello W.

    2006-03-01

    Full Text Available The aims of this study were to determine the incidence of the filarial avian nematode Serratospiculum seurati in falcons from Kuwait, report clinical signs and find an effective therapy. Naturally occurring S. seurati infestation was diagnosed in 149 (8.7 % out of 1,706 captive falcons examined between May 2003 and April 2005, and 140 of these were treated with melarsomine at dosage of 0.25 mg/kg injected intramuscularly for two days, and ivermectin, injected once at the dose of 1 mg/kg, 10 days later. Infestation was reportedly symptomatic in 107 (71.8 % and non-symptomatic in 42 (28.2 % falcons. Signs reported more often were dyspnoea (58.8 %, reduced speed and strength in flight (56 %, weight loss (38.3 %, anorexia/poor appetite (22.4 % and lethargy (16.8 %. After administration of melarsomine, signs disappeared within 1-10 days in symptomatic birds and improvement of flight performances was noted in non-symptomatic birds. Dead adult parasites were ejected in 22 cases. Embryonated eggs were not detected in coproscopic checks made 10 and 40 days after the end of therapy, in association with lasting clinical remission. The main conclusion is that Serratospiculum seurati is overall pathogenic for birds of prey in the Middle East and that melarsomine + ivermectin can be an effective protocol of therapy eliminating both clinical signs and parasites.

  20. Subsurface Biogeochemistry of Actinides

    Energy Technology Data Exchange (ETDEWEB)

    Kersting, Annie B. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States). Univ. Relations and Science Education; Zavarin, Mavrik [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States). Glenn T. Seaborg Inst.

    2016-06-29

    A major scientific challenge in environmental sciences is to identify the dominant processes controlling actinide transport in the environment. It is estimated that currently, over 2200 metric tons of plutonium (Pu) have been deposited in the subsurface worldwide, a number that increases yearly with additional spent nuclear fuel (Ewing et al., 2010). Plutonium has been shown to migrate on the scale of kilometers, giving way to a critical concern that the fundamental biogeochemical processes that control its behavior in the subsurface are not well understood (Kersting et al., 1999; Novikov et al., 2006; Santschi et al., 2002). Neptunium (Np) is less prevalent in the environment; however, it is predicted to be a significant long-term dose contributor in high-level nuclear waste. Our focus on Np chemistry in this Science Plan is intended to help formulate a better understanding of Pu redox transformations in the environment and clarify the differences between the two long-lived actinides. The research approach of our Science Plan combines (1) Fundamental Mechanistic Studies that identify and quantify biogeochemical processes that control actinide behavior in solution and on solids, (2) Field Integration Studies that investigate the transport characteristics of Pu and test our conceptual understanding of actinide transport, and (3) Actinide Research Capabilities that allow us to achieve the objectives of this Scientific Focus Area (SFA and provide new opportunities for advancing actinide environmental chemistry. These three Research Thrusts form the basis of our SFA Science Program (Figure 1).

  1. Overall Subsurface Ventilation Systems

    International Nuclear Information System (INIS)

    Thomas, Edward G.

    2000-01-01

    The purpose of this analysis is to provide a conceptual design for the Subsurface Ventilation System and address the construction, emplacement, monitoring, backfill, and closure ventilation phases. The design will be based on the recently established program requirements for transitioning to the Site Recommendation (SR) design as outlined by ''Approach to Implementing the Site Recommendation Baseline'' (Stroupe 2000) and the Monitored Geologic Repository Project Description Document (CRWMS M and O 1999d) (MGR). This analysis will summarize the ventilation concepts that have developed from the incorporation of recent changes to the Technical Baseline and describe changes to the conceptual ventilation design that have resulted from the thermal management requirements. Ventilation concepts presented in the Viability Assessment Design (VA Design) that have not changed are identified and included. The objective of this analysis is to provide a basis for the System Description Document (SDD) Section 2 that provides input to the SR Consideration Report. The scope of the analysis includes the following tasks: (1) Determine the number of primary shafts based on the emplacement airflow rate required to meet thermal goals and (2) Determine conceptual airflow networks for major repository phases including: Construction; Emplacement; Monitoring; and Closure. In addition evaluate: (1) Radon mitigation concerns and options; (2) Monitoring and control requirement changes needed to meet current guidelines; and (3) The impact on the ventilation system of a radiological release due to a potential subsurface fire involving a waste package

  2. Effects of combined treatments of irradiation and antimicrobial coatings on reduction of food pathogens in broccoli florets

    Science.gov (United States)

    Takala, P. N.; Salmieri, S.; Vu, K. D.; Lacroix, M.

    2011-12-01

    The effect of combined treatment of antimicrobial coatings and γ-radiation on reduction of food pathogens such as Listeria monocytogenes, Escherichia coli, and Salmonella Typhimurium was evaluated in broccoli florets. Broccoli florets were inoculated with pathogenic bacteria at 10 6 CFU/g. Inoculated florets were then coated with methylcellulose-based coating containing various mixtures of antimicrobial agents: organic acids (OAs) plus lactic acid bacteria metabolites (LABs), OA plus citrus extract (CE), OA plus CE plus spice mixture (SM), and OA plus rosemary extract (RE). Coated florets were irradiated with various doses (0-3.3 kGy), and microbial analyses were used to calculate the D10 value and radiosensitive relative. The coating containing OA plus CE was the most effective formulation for increasing the sensitization of Escherichia coli by 2.4 times as compared to the control without the antimicrobial coating. For Salmonella Typhimurium, coating containing OA plus LAB was the most effective formulation, increasing radiosensitivity by 2.4 times as well. All antimicrobial coatings had almost the same effect of increasing the sensitivity of Listeria monocytogenes (from 1.31 to 1.45 times) to γ-irradiation.

  3. Pseudomonas aeruginosa biofilm infections in cystic fibrosis: insights into pathogenic processes and treatment strategies

    DEFF Research Database (Denmark)

    Hassett, Daniel J; Korfhagen, Thomas R; Irvin, Randall T

    2010-01-01

    CF airway mucus can be infected by opportunistic microorganisms, notably Pseudomonas aeruginosa. Once organisms are established as biofilms, even the most potent antibiotics have little effect on their viability, especially during late-stage chronic infections. Better understanding of the mechani...... of the mechanisms used by P. aeruginosa to circumvent host defenses and therapeutic intervention strategies is critical for advancing novel treatment strategies....

  4. Prevalence and persistence of potentially pathogenic and antibiotic resistant bacteria during anaerobic digestion treatment of cattle manure.

    Science.gov (United States)

    Resende, Juliana Alves; Silva, Vânia Lúcia; de Oliveira, Tamara Lopes Rocha; de Oliveira Fortunato, Samuel; da Costa Carneiro, Jailton; Otenio, Marcelo Henrique; Diniz, Cláudio Galuppo

    2014-02-01

    Anaerobic digestion figures as a sustainable alternative to avoid discharge of cattle manure in the environment, which results in biogas and biofertilizer. Persistence of potentially pathogenic and drug-resistant bacteria during anaerobic digestion of cattle manure was evaluated. Selective cultures were performed for enterobacteria (ENT), non-fermenting Gram-negative rods (NFR) and Gram-positive cocci (GPC). Antimicrobial susceptibility patterns were determined and a decay of all bacterial groups was observed after 60days. Multidrug-resistant bacteria were detected both the influent and effluent. GPC, the most prevalent group was highly resistant against penicillin and levofloxacin, whereas resistance to ampicillin, ampicillin-sulbactam and chloramphenicol was frequently observed in the ENT and NFR groups. The data point out the need of discussions to better address management of biodigesters and the implementation of sanitary and microbiological safe treatments of animal manures to avoid consequences to human, animal and environmental health. Copyright © 2013 Elsevier Ltd. All rights reserved.

  5. Impacts of thiamethoxam seed treatment and host plant resistance on the soybean aphid fungal pathogen, Pandora neoaphidis.

    Science.gov (United States)

    Koch, Karrie A; Ragsdale, David W

    2011-12-01

    Since the introduction of soybean aphid, Aphis glycines Matsumura, from Asia, insecticide use in soybean has increased substantially in the north central United States. Insecticide seed treatments and aphid resistant soybean varieties are management tactics that may reduce reliance on foliar applications of broad-spectrum insecticides. Exploring potential nontarget impacts of these technologies will be an important step in incorporating them into aphid management programs. We investigated impacts of thiamethoxam seed treatment and Rag1 aphid resistant soybean on a fungal pathogen of soybean aphid, Pandora neoaphidis (Remaudière & Hennebert) Humber, via open plot and cage studies. We found that although thiamethoxam seed treatment did significantly lower aphid pressure in open plots compared with an untreated control, this reduction in aphid density translated into nonsignificant decreases in fungal disease prevalence in aphids. Furthermore, when aphid densities were approximately equal in seed treated and untreated soybean, no impact on aphid fungal disease was observed. In open plots, Rag1 resistant soybean experienced lower aphid pressure and aphid disease prevalence compared with a nonresistant isoline. However, in cages when aphid densities were equivalent in both resistant and susceptible soybean, resistance had no impact on aphid disease prevalence. The addition of thiamethoxam seed treatment to resistant soybean yielded aphid densities and aphid disease prevalence similar to untreated, resistant soybean. These studies provide evidence that thiamethoxam seed treatments and Rag1 resistance can impact P. neoaphidis via decreased aphid densities; however, this impact is minimal, implying use of seed treatments and host plant resistance are compatible with P. neoaphidis.

  6. Subsurface Ventilation System Description Document

    Energy Technology Data Exchange (ETDEWEB)

    Eric Loros

    2001-07-25

    The Subsurface Ventilation System supports the construction and operation of the subsurface repository by providing air for personnel and equipment and temperature control for the underground areas. Although the system is located underground, some equipment and features may be housed or located above ground. The system ventilates the underground by providing ambient air from the surface throughout the subsurface development and emplacement areas. The system provides fresh air for a safe work environment and supports potential retrieval operations by ventilating and cooling emplacement drifts. The system maintains compliance within the limits established for approved air quality standards. The system maintains separate ventilation between the development and waste emplacement areas. The system shall remove a portion of the heat generated by the waste packages during preclosure to support thermal goals. The system provides temperature control by reducing drift temperature to support potential retrieval operations. The ventilation system has the capability to ventilate selected drifts during emplacement and retrieval operations. The Subsurface Facility System is the main interface with the Subsurface Ventilation System. The location of the ducting, seals, filters, fans, emplacement doors, regulators, and electronic controls are within the envelope created by the Ground Control System in the Subsurface Facility System. The Subsurface Ventilation System also interfaces with the Subsurface Electrical System for power, the Monitored Geologic Repository Operations Monitoring and Control System to ensure proper and safe operation, the Safeguards and Security System for access to the emplacement drifts, the Subsurface Fire Protection System for fire safety, the Emplacement Drift System for repository performance, and the Backfill Emplacement and Subsurface Excavation Systems to support ventilation needs.

  7. Subsurface Ventilation System Description Document

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    2000-10-12

    The Subsurface Ventilation System supports the construction and operation of the subsurface repository by providing air for personnel and equipment and temperature control for the underground areas. Although the system is located underground, some equipment and features may be housed or located above ground. The system ventilates the underground by providing ambient air from the surface throughout the subsurface development and emplacement areas. The system provides fresh air for a safe work environment and supports potential retrieval operations by ventilating and cooling emplacement drifts. The system maintains compliance within the limits established for approved air quality standards. The system maintains separate ventilation between the development and waste emplacement areas. The system shall remove a portion of the heat generated by the waste packages during preclosure to support thermal goals. The system provides temperature control by reducing drift temperature to support potential retrieval operations. The ventilation system has the capability to ventilate selected drifts during emplacement and retrieval operations. The Subsurface Facility System is the main interface with the Subsurface Ventilation System. The location of the ducting, seals, filters, fans, emplacement doors, regulators, and electronic controls are within the envelope created by the Ground Control System in the Subsurface Facility System. The Subsurface Ventilation System also interfaces with the Subsurface Electrical System for power, the Monitored Geologic Repository Operations Monitoring and Control System to ensure proper and safe operation, the Safeguards and Security System for access to the emplacement drifts, the Subsurface Fire Protection System for fire safety, the Emplacement Drift System for repository performance, and the Backfill Emplacement and Subsurface Excavation Systems to support ventilation needs.

  8. Performance of two swine manure treatment systems on chemical composition and on the reduction of pathogens.

    Science.gov (United States)

    Viancelli, A; Kunz, A; Steinmetz, R L R; Kich, J D; Souza, C K; Canal, C W; Coldebella, A; Esteves, P A; Barardi, C R M

    2013-01-01

    Swine effluents must be correctly handled to avoid negative environmental impacts. In this study, the profiles of two swine manure treatment systems were evaluated: a solid-liquid separation step, followed by an anaerobic reactor, and an aerobic step (System 1); and a biodigester followed by serial lagoons (System 2). Both systems were described by the assessment of chemical, bacterial and viral parameters. The results showed that in System 1, there was reduction of chemicals (COD, phosphorus, total Kjeldhal nitrogen - TKN - and NH(3)), total coliforms and Escherichia coli; however, the same reduction was not observed for Salmonella sp. Viral particles were significantly reduced but not totally eliminated from the effluent. In System 2, there was a reduction of chemicals, bacteria and viruses with no detection of Salmonella sp., circovirus, parvovirus, and torque teno virus in the effluent. The chemical results indicate that the treated effluent can be reused for cleaning swine facilities. However, the microbiological results show a need of additional treatment to achieve a complete inactivation for cases when direct contact with animals is required. Copyright © 2012 Elsevier Ltd. All rights reserved.

  9. Concentration of facultative pathogenic bacteria and antibiotic resistance genes during sewage treatment and in receiving rivers.

    Science.gov (United States)

    Heß, Stefanie; Lüddeke, Frauke; Gallert, Claudia

    2016-10-01

    Whereas the hygienic condition of drinking and bathing water by law must be monitored by culture-based methods, for quantification of microbes and antibiotic resistance in soil or the aquatic environment, often molecular genetic assays are used. For comparison of both methods, knowledge of their correlation is necessary. Therefore the population of total bacteria, Escherichia coli, enterococci and staphylococci during sewage treatment and in receiving river water was compared by agar plating and quantitative polymerase chain reaction (qPCR) assays. In parallel, all samples were investigated for clinically relevant antibiotic resistance genes. Whereas plating and qPCR data for total bacteria correlated well in sewage after primary treatment, qPCR data of river water indicated higher cell numbers for E. coli. It is unknown if these cells are 'only' not growing under standard conditions or if they are dead. Corresponding to the amount of non-culturable cells, the 'breakpoints' for monitoring water quality should be adapted. The abundances of clinically relevant antibiotic resistance genes in river water were in the same order of magnitude or even higher than in treated sewage. For estimation of the health risk it is important to investigate which species carry respective genes and whether these genes are disseminated via gene transfer.

  10. Bioeconomic modeling of lactational antimicrobial treatment of new bovine subclinical intramammary infections caused by contagious pathogens

    DEFF Research Database (Denmark)

    Van den Borne, B. H. P.; Hisham Beshara Halasa, Tariq; Van Schaik, G.

    2010-01-01

    of Staphylococcus aureus, Streptococcus uberis, Streptococcus dysgalactiae, and Escherichia coli during lactation and the dry period in a 100-cow dairy herd during 1 quota year. Input parameters on cure were obtained from recent Dutch field data. The costs of clinical IMI, subclinical IMI, and intervention were...... not limit the spread of Staph. aureus at high transmission rates, although the associated costs were lower compared with no intervention. To improve udder health in a dairy herd, lactational treatment of contagious subclinical IMI must therefore be preceded by management measures that lower the transmission...... of uncured cows after 2 mo of infection. Model behavior was observed for variation in parameter input values. Compared with no lactational intervention, lactational intervention of new subclinical IMI resulted in fewer clinical flare ups, less transmission within the herd, and much lower combined total...

  11. [Helicobacter pylori 25 years after (1983 -2008): epidemiology, microbiology, pathogenics, diagnostics and treatment].

    Science.gov (United States)

    Ramírez Ramos, Alberto; Sánchez Sánchez, Rolando

    2009-01-01

    People have been infected by this bacteria 58,000 years ago. Prevalence of infection varies in different nation. In developing countries infection is acquired in early childhood. The forms of infection are/fecal-oral, oral-oral an gastro oral. In Perú we found same prevalence in the coast, jungle and sierra and described that water is one of the ways of infection.MICROBIOLOGY: Three strains predominant in Spanish, Asiatic and people from India have been identified. DNA has 1.65 million bases. Different factors of virulence, enzymes and toxins have also been described. Inflamatory response; neutrophiles, lymphocytes T and B, plasma cells, macrophages.METHODS OF DIAGNOSIS: Invasive and non invasive procedures. Different treatment schemes are described: 1st, 2nd, 3rd lines, rescue therapies. Secondary reactions, alternative schemes, recurrence, reinfection and experience in Perú are also described.

  12. Metagenomic analyses of alcohol induced pathogenic alterations in the intestinal microbiome and the effect of Lactobacillus rhamnosus GG treatment.

    Directory of Open Access Journals (Sweden)

    Lara Bull-Otterson

    Full Text Available Enteric dysbiosis plays an essential role in the pathogenesis of alcoholic liver disease (ALD. Detailed characterization of the alterations in the gut microbiome is needed for understanding their pathogenic role in ALD and developing effective therapeutic approaches using probiotic supplementation. Mice were fed liquid Lieber-DeCarli diet without or with alcohol (5% v/v for 6 weeks. A subset of mice were administered the probiotic Lactobacillus rhamnosus GG (LGG from 6 to 8 weeks. Indicators of intestinal permeability, hepatic steatosis, inflammation and injury were evaluated. Metagenomic analysis of the gut microbiome was performed by analyzing the fecal DNA by amplification of the V3-V5 regions of the 16S rRNA gene and large-scale parallel pyrosequencing on the 454 FLX Titanium platform. Chronic ethanol feeding caused a decline in the abundance of both Bacteriodetes and Firmicutes phyla, with a proportional increase in the gram negative Proteobacteria and gram positive Actinobacteria phyla; the bacterial genera that showed the biggest expansion were the gram negative alkaline tolerant Alcaligenes and gram positive Corynebacterium. Commensurate with the qualitative and quantitative alterations in the microbiome, ethanol caused an increase in plasma endotoxin, fecal pH, hepatic inflammation and injury. Notably, the ethanol-induced pathogenic changes in the microbiome and the liver were prevented by LGG supplementation. Overall, significant alterations in the gut microbiome over time occur in response to chronic alcohol exposure and correspond to increases in intestinal barrier dysfunction and development of ALD. Moreover, the altered bacterial communities of the gut may serve as significant therapeutic target for the prevention/treatment of chronic alcohol intake induced intestinal barrier dysfunction and liver disease.

  13. Experimental antibiotic treatment identifies potential pathogens of white band disease in the endangered Caribbean coral Acropora cervicornis.

    Science.gov (United States)

    Sweet, M J; Croquer, A; Bythell, J C

    2014-08-07

    Coral diseases have been increasingly reported over the past few decades and are a major contributor to coral decline worldwide. The Caribbean, in particular, has been noted as a hotspot for coral disease, and the aptly named white syndromes have caused the decline of the dominant reef building corals throughout their range. White band disease (WBD) has been implicated in the dramatic loss of Acropora cervicornis and Acropora palmata since the 1970s, resulting in both species being listed as critically endangered on the International Union for Conservation of Nature Red list. The causal agent of WBD remains unknown, although recent studies based on challenge experiments with filtrate from infected hosts concluded that the disease is probably caused by bacteria. Here, we report an experiment using four different antibiotic treatments, targeting different members of the disease-associated microbial community. Two antibiotics, ampicillin and paromomycin, arrested the disease completely, and by comparing with community shifts brought about by treatments that did not arrest the disease, we have identified the likely candidate causal agent or agents of WBD. Our interpretation of the experimental treatments is that one or a combination of up to three specific bacterial types, detected consistently in diseased corals but not detectable in healthy corals, are likely causal agents of WBD. In addition, a histophagous ciliate (Philaster lucinda) identical to that found consistently in association with white syndrome in Indo-Pacific acroporas was also consistently detected in all WBD samples and absent in healthy coral. Treatment with metronidazole reduced it to below detection limits, but did not arrest the disease. However, the microscopic disease signs changed, suggesting a secondary role in disease causation for this ciliate. In future studies to identify a causal agent of WBD via tests of Henle-Koch's postulates, it will be vital to experimentally control for populations

  14. Subsurface Facility System Description Document

    International Nuclear Information System (INIS)

    Eric Loros

    2001-01-01

    The Subsurface Facility System encompasses the location, arrangement, size, and spacing of the underground openings. This subsurface system includes accesses, alcoves, and drifts. This system provides access to the underground, provides for the emplacement of waste packages, provides openings to allow safe and secure work conditions, and interfaces with the natural barrier. This system includes what is now the Exploratory Studies Facility. The Subsurface Facility System physical location and general arrangement help support the long-term waste isolation objectives of the repository. The Subsurface Facility System locates the repository openings away from main traces of major faults, away from exposure to erosion, above the probable maximum flood elevation, and above the water table. The general arrangement, size, and spacing of the emplacement drifts support disposal of the entire inventory of waste packages based on the emplacement strategy. The Subsurface Facility System provides access ramps to safely facilitate development and emplacement operations. The Subsurface Facility System supports the development and emplacement operations by providing subsurface space for such systems as ventilation, utilities, safety, monitoring, and transportation

  15. Environmental Electrokinetics for a sustainable subsurface

    DEFF Research Database (Denmark)

    Lima, A.T.; Hofmann, A.; Reynolds, D.R.

    2017-01-01

    Soil and groundwater are key components in the sustainable management of the subsurface environment. Source contamination is one of its main threats and is commonly addressed using established remediation techniques such as in-situ chemical oxidation (ISCO), in-situ chemical reduction (ISCR; most...... contaminants in higher permeability subsurface materials such as sands, but achieve only limited success at sites where low permeability soils, such as silts and clays, prevail. Electrokinetics (EK), a soil remediation technique mostly recognized in in-situ treatment of low permeability soils, has......, for the last decade, been combined with more conventional techniques and can significantly enhance the performance of several of these remediation technologies, including ISCO, ISCR, EISB and phytoremediation. Herein, we discuss the use of emerging EK techniques in tandem with conventional remediation...

  16. QPCR Analysis of Total and Viable Enterococci in Waste Water Treatment: Comparison with Culture in Predicting Pathogen Reductions

    Science.gov (United States)

    BEACH Act amendment to Clean Water Act requires EPA to establish more expeditious methods for the timely detection of pathogens and pathogen indicators in coastal waters New methods should demonstrate utility for and be compatible with all CWA 304(a) criteria needs including:...

  17. The Future of Subsurface Characterization

    Science.gov (United States)

    Yeh, T. J.

    2006-12-01

    Existing monitoring and characterization technologies can cover only a small fraction of the subsurface, and the information collected cannot be used to effectively manage current and future drought and other water- related problems. Subsurface sciences need a breakthrough "instrument" to greatly expand and deepen our ability to "see into the groundwater basin." The theme of this talk is to promote the idea of collecting data intelligently and analyzing data smartly for characterization of the subsurface at high resolutions beyond the capabilities of current technology. Specifically, we argue that tomographic surveying is a smart approach, which collects data more cost-effectively and less invasively than existing technologies to characterize the subsurface environments. Limitations of a single type (hydrologic, chemical or geophysical) of tomographic survey then motivate fusion of different types of tomographic surveys such that each survey takes advantage of others to overcome its weakness to reach its optimal capability in a reciprocal manner. A basin is an appropriate scale for the purpose of water resources management. Therefore, the field-scale data collection and fusion concept/technology is expanded to basin-scale characterizations. In order to facilitate these basin-scale tomographic surveys, fusion of passive basin-scale tomographys are suggested that exploit recurrent natural stimuli (e,g., lightning, earthquakes, storm events, barometric variations, river- stage variations, etc.) as sources of excitations, along with implementation of sensor networks that provide long-term and spatially distributed monitoring of signals on the land surface and in the subsurface. This vision for basin-scale subsurface characterization undoubtedly faces unprecedented technological challenges and requires interdisciplinary collaborations (e.g., surface and subsurface hydrology, geophysics, geology, geochemist, information technology, applied mathematics, atmospheric

  18. Comparison of simple, small, full-scale sewage treatment systems in Brazil: UASB-maturation ponds-coarse filter; UASB-horizontal subsurface-flow wetland; vertical-flow wetland (first stage of French system).

    Science.gov (United States)

    von Sperling, M

    2015-01-01

    This paper presents a comparison between three simple sewage treatment lines involving natural processes: (a) upflow anaerobic sludge blanket (UASB) reactor-three maturation ponds in series-coarse rock filter; (b) UASB reactor-horizontal subsurface-flow constructed wetland; and (c) vertical-flow constructed wetlands treating raw sewage (first stage of the French system). The evaluation was based on several years of practical experience with three small full-scale plants receiving the same influent wastewater (population equivalents of 220, 60 and 100 inhabitants) in the city of Belo Horizonte, Brazil. The comparison included interpretation of concentrations and removal efficiencies based on monitoring data (organic matter, solids, nitrogen, phosphorus, coliforms and helminth eggs), together with an evaluation of practical aspects, such as land and volume requirements, sludge production and handling, plant management, clogging and others. Based on an integrated evaluation of all aspects involved, it is worth emphasizing that each system has its own specificities, and no generalization can be made on the best option. The overall conclusion is that the three lines are suitable for sewage treatment in small communities in warm-climate regions.

  19. Inhibitory effects of UV treatment and a combination of UV and dry heat against pathogens on stainless steel and polypropylene surfaces.

    Science.gov (United States)

    Bae, Young-Min; Lee, Sun-Young

    2012-01-01

    Pathogens that contaminate the surfaces of food utensils may contribute to the occurrence of foodborne disease outbreaks. We investigated the efficacy of UV treatment combined with dry heat (50 °C) for inhibiting 5 foodborne pathogens (Escherichia coli O157:H7, Salmonella Typhimurium, Pseudomonas aeruginosa, Listeria monocytogenes, and Staphylococcus aureus) on stainless steel and polypropylene surfaces in this study. We inoculated substrates with each of the 5 foodborne pathogens cultured on agar surface and then UV treatment alone or a combination of both UV and dry heat (50 °C) was applied for 30 min, 1 h, 2 h, and 3 h. The initial populations of the 5 pathogens before treatment were 8.02 to 9.18 and 8.73 to 9.16 log₁₀ CFU/coupon on the surfaces of stainless steel and polypropylene coupons, respectively. UV treatments for 3 h significantly inhibited S. Typhimurium, L. monocytogenes, and S. aureus on the stainless steel by 3.06, 2.18, and 2.70 log₁₀ CFU/coupon, and S. aureus on the polypropylene by 3.11 log₁₀ CFU/coupon, respectively. The inhibitory effects of the combined UV and dry heat treatment (50 °C) increased as treatment time increased, yielding significant reductions in all samples treated for 3 h, with the exception of S. aureus on polypropylene. The reduction level of E. coli O157:H7 treated for 3 h on the surface of stainless steel and polypropylene treated was approximately 6.00 log₁₀ CFU/coupon. These results indicate that combined UV and dry heat (50 °C) treatments may be effective for controlling microbial contamination on utensils and cooking equipment surfaces as well as in other related environments. © 2011 Institute of Food Technologists®

  20. Subsurface Application Enhances Benefits of Manure Redistribution

    Directory of Open Access Journals (Sweden)

    Jian Liu

    2016-02-01

    Full Text Available Sustainable nutrient management requires redistribution of livestock manure from nutrient-excess areas to nutrient-deficit areas. Field experiments were conducted to assess agronomic (i.e., corn yield and environmental (i.e., ammonia volatilization and surface nutrient loss effects of different poultry litter application methods (surface vs. subsurface and timings (fall vs. spring in a potential manure-importing region in the Chesapeake Bay Watershed in the United States. All four litter treatments (205 kg nitrogen ha produced grain yields (10.9–12.8 Mg ha nearly equivalent to or higher than the 11.5 Mg ha yield expected from the same mineral nitrogen rate. Compared with surface application, subsurface application significantly reduced ammonia emission ( < 0.0001, runoff volume (fall: = 0.02; spring: = 0.004, and loads of nitrate nitrogen ( < 0.0001; = 0.003 and dissolved phosphorus ( < 0.0001; = 0.004 soon after application. Integrating subsurface manure application technologies into the manure redistribution programs would help ensure that the surplus nutrients being relocated provide a maximum agronomic impact and minimum environmental impact to the importing region.

  1. Comparison of Methods to Identify Pathogens and Associated Virulence Functional Genes in Biosolids from Two Different Wastewater Treatment Facilities in Canada.

    Directory of Open Access Journals (Sweden)

    Etienne Yergeau

    Full Text Available The use of treated municipal wastewater residues (biosolids as fertilizers is an attractive, inexpensive option for growers and farmers. Various regulatory bodies typically employ indicator organisms (fecal coliforms, E. coli and Salmonella to assess the adequacy and efficiency of the wastewater treatment process in reducing pathogen loads in the final product. Molecular detection approaches can offer some advantages over culture-based methods as they can simultaneously detect a wider microbial species range, including non-cultivable microorganisms. However, they cannot directly assess the viability of the pathogens. Here, we used bacterial enumeration methods together with molecular methods including qPCR, 16S rRNA and cpn60 gene amplicon sequencing and shotgun metagenomic sequencing to compare pre- and post-treatment biosolids from two Canadian wastewater treatment plants (WWTPs. Our results show that an anaerobic digestion WWTP was unsuccessful at reducing the live indicator organism load (coliforms, generic E. coli and Salmonella below acceptable regulatory criteria, while biosolids from a dewatering/pelletization WWTP met these criteria. DNA from other pathogens was detected by the molecular methods, but these species were considered less abundant. Clostridium DNA increased significantly following anaerobic digestion treatments. In addition to pathogen DNA, genes related to virulence and antibiotic resistance were identified in treated biosolids. Shotgun metagenomics revealed the widest range of pathogen DNA and, among the approaches used here, was the only approach that could access functional gene information in treated biosolids. Overall, our results highlight the potential usefulness of amplicon sequencing and shotgun metagenomics as complementary screening methods that could be used in parallel with culture-based methods, although more detailed comparisons across a wider range of sites would be needed.

  2. Plant pathogen resistance

    Science.gov (United States)

    Greenberg, Jean T; Jung, Ho Won; Tschaplinski, Timothy

    2012-11-27

    Azelaic acid or its derivatives or analogs induce a robust and a speedier defense response against pathogens in plants. Azelaic acid treatment alone does not induce many of the known defense-related genes but activates a plant's defense signaling upon pathogen exposure.

  3. Processes for managing pathogens.

    Science.gov (United States)

    Godfree, Alan; Farrell, Joseph

    2005-01-01

    Wastewater contains human, animal, and plant pathogens capable of causing viral, bacterial, or parasitic infections. There are several routes whereby sewage pathogens may affect human health, including direct contact, contamination of food crops, zoonoses, and vectors. The range and numbers of pathogens in municipal wastewater vary with the level of endemic disease in the community, discharges from commercial activities, and seasonal factors. Regulations to control pathogen risk in the United States and Europe arising from land application of biosolids are based on the concept of multiple barriers to the prevention of transmission. The barriers are (i) treatment to reduce pathogen content and vector attraction, (ii) restrictions on crops grown on land to which biosolids have been applied, and (iii) minimum intervals following application and grazing or harvesting. Wastewater treatment reduces number of pathogens in the wastewater by concentrating them with the solids in the sludge. Although some treatment processes are designed specifically to inactivate pathogens, many are not, and the actual mechanisms of microbial inactivation are not fully understood for all processes. Vector attraction is reduced by stabilization (reduction of readily biodegradable material) and/or incorporation immediately following application. Concerns about health risks have renewed interest in the effects of treatment (on pathogens) and advanced treatment methods, and work performed in the United States suggests that Class A pathogen reduction can be achieved less expensively than previously thought. Effective pathogen risk management requires control to the complete chain of sludge treatment, biosolids handling and application, and post-application activities. This may be achieved by adherence to quality management systems based on hazard analysis critical control point (HACCP) principles.

  4. Subsurface Geotechnical Parameters Report

    International Nuclear Information System (INIS)

    Rigby, D.; Mrugala, M.; Shideler, G.; Davidsavor, T.; Leem, J.; Buesch, D.; Sun, Y.; Potyondy, D.; Christianson, M.

    2003-01-01

    The Yucca Mountain Project is entering a the license application (LA) stage in its mission to develop the nation's first underground nuclear waste repository. After a number of years of gathering data related to site characterization, including activities ranging from laboratory and site investigations, to numerical modeling of processes associated with conditions to be encountered in the future repository, the Project is realigning its activities towards the License Application preparation. At the current stage, the major efforts are directed at translating the results of scientific investigations into sets of data needed to support the design, and to fulfill the licensing requirements and the repository design activities. This document addresses the program need to address specific technical questions so that an assessment can be made about the suitability and adequacy of data to license and construct a repository at the Yucca Mountain Site. In July 2002, the U.S. Nuclear Regulatory Commission (NRC) published an Integrated Issue Resolution Status Report (NRC 2002). Included in this report were the Repository Design and Thermal-Mechanical Effects (RDTME) Key Technical Issues (KTI). Geotechnical agreements were formulated to resolve a number of KTI subissues, in particular, RDTME KTIs 3.04, 3.05, 3.07, and 3.19 relate to the physical, thermal and mechanical properties of the host rock (NRC 2002, pp. 2.1.1-28, 2.1.7-10 to 2.1.7-21, A-17, A-18, and A-20). The purpose of the Subsurface Geotechnical Parameters Report is to present an accounting of current geotechnical information that will help resolve KTI subissues and some other project needs. The report analyzes and summarizes available qualified geotechnical data. It evaluates the sufficiency and quality of existing data to support engineering design and performance assessment. In addition, the corroborative data obtained from tests performed by a number of research organizations is presented to reinforce

  5. Subsurface Geotechnical Parameters Report

    Energy Technology Data Exchange (ETDEWEB)

    D. Rigby; M. Mrugala; G. Shideler; T. Davidsavor; J. Leem; D. Buesch; Y. Sun; D. Potyondy; M. Christianson

    2003-12-17

    The Yucca Mountain Project is entering a the license application (LA) stage in its mission to develop the nation's first underground nuclear waste repository. After a number of years of gathering data related to site characterization, including activities ranging from laboratory and site investigations, to numerical modeling of processes associated with conditions to be encountered in the future repository, the Project is realigning its activities towards the License Application preparation. At the current stage, the major efforts are directed at translating the results of scientific investigations into sets of data needed to support the design, and to fulfill the licensing requirements and the repository design activities. This document addresses the program need to address specific technical questions so that an assessment can be made about the suitability and adequacy of data to license and construct a repository at the Yucca Mountain Site. In July 2002, the U.S. Nuclear Regulatory Commission (NRC) published an Integrated Issue Resolution Status Report (NRC 2002). Included in this report were the Repository Design and Thermal-Mechanical Effects (RDTME) Key Technical Issues (KTI). Geotechnical agreements were formulated to resolve a number of KTI subissues, in particular, RDTME KTIs 3.04, 3.05, 3.07, and 3.19 relate to the physical, thermal and mechanical properties of the host rock (NRC 2002, pp. 2.1.1-28, 2.1.7-10 to 2.1.7-21, A-17, A-18, and A-20). The purpose of the Subsurface Geotechnical Parameters Report is to present an accounting of current geotechnical information that will help resolve KTI subissues and some other project needs. The report analyzes and summarizes available qualified geotechnical data. It evaluates the sufficiency and quality of existing data to support engineering design and performance assessment. In addition, the corroborative data obtained from tests performed by a number of research organizations is presented to reinforce

  6. INFLUENCE OF CULTIVARS AND SEED THERMAL TREATMENT ON THE DEVELOPMENT OF FUNGAL PATHOGENS IN CARROT AND ONION PLANTS

    Czech Academy of Sciences Publication Activity Database

    Koudela, M.; Novotný, Čeněk

    2016-01-01

    Roč. 64, č. 4 (2016), s. 1181-1189 ISSN 1211-8516 R&D Projects: GA MZe QJ1210165 Institutional support: RVO:61388971 Keywords : carrot * onion * fungal pathogens * plants infection Subject RIV: EE - Microbiology, Virology

  7. SUBSURFACE CONSTRUCTION AND DEVELOPMENT ANALYSIS

    International Nuclear Information System (INIS)

    N.E. Kramer

    1998-01-01

    The purpose of this analysis is to identify appropriate construction methods and develop a feasible approach for construction and development of the repository subsurface facilities. The objective of this analysis is to support development of the subsurface repository layout for License Application (LA) design. The scope of the analysis for construction and development of the subsurface Repository facilities covers: (1) Excavation methods, including application of knowledge gained from construction of the Exploratory Studies Facility (ESF). (2) Muck removal from excavation headings to the surface. This task will examine ways of preventing interference with other subsurface construction activities. (3) The logistics and equipment for the construction and development rail haulage systems. (4) Impact of ground support installation on excavation and other construction activities. (5) Examination of how drift mapping will be accomplished. (6) Men and materials handling. (7) Installation and removal of construction utilities and ventilation systems. (8) Equipping and finishing of the emplacement drift mains and access ramps to fulfill waste emplacement operational needs. (9) Emplacement drift and access mains and ramps commissioning prior to handover for emplacement operations. (10) Examination of ways to structure the contracts for construction of the repository. (11) Discussion of different construction schemes and how to minimize the schedule risks implicit in those schemes. (12) Surface facilities needed for subsurface construction activities

  8. Program overview: Subsurface science program

    International Nuclear Information System (INIS)

    1994-03-01

    The OHER Subsurface Science Program is DOE's core basic research program concerned with subsoils and groundwater. These practices have resulted in contamination by mixtures of organic chemicals, inorganic chemicals, and radionuclides. A primary long-term goal is to provide a foundation of knowledge that will lead to the reduction of environmental risks and to cost-effective cleanup strategies. Since the Program was initiated in 1985, a substantial amount of research in hydrogeology, subsurface microbiology, and the geochemistry of organically complexed radionuclides has been completed, leading to a better understanding of contaminant transport in groundwater and to new insights into microbial distribution and function in the subsurface environments. The Subsurface Science Program focuses on achieving long-term scientific advances that will assist DOE in the following key areas: providing the scientific basis for innovative in situ remediation technologies that are based on a concept of decontamination through benign manipulation of natural systems; understanding the complex mechanisms and process interactions that occur in the subsurface; determining the influence of chemical and geochemical-microbial processes on co-contaminant mobility to reduce environmental risks; improving predictions of contaminant transport that draw on fundamental knowledge of contaminant behavior in the presence of physical and chemical heterogeneities to improve cleanup effectiveness and to predict environmental risks

  9. VISUALIZATION OF REGISTERED SUBSURFACE ANATOMY

    DEFF Research Database (Denmark)

    2010-01-01

    A system and method for visualization of subsurface anatomy includes obtaining a first image from a first camera and a second image from a second camera or a second channel of the first camera, where the first and second images contain shared anatomical structures. The second camera and the second...... channel of the first camera are capable of imaging anatomy beneath the surface in ultra-violet, visual, or infra-red spectrum. A data processor is configured for computing registration of the first image to the second image to provide visualization of subsurface anatomy during surgical procedures...

  10. Pathogen exclusion properties of canine probiotics are influenced by the growth media and physical treatments simulating industrial processes.

    Science.gov (United States)

    Grześkowiak, Ł; Collado, M C; Beasley, S; Salminen, S

    2014-05-01

    Manufacturing process used in preparation of probiotic products may alter beneficial properties of probiotics. The effect of different growth media and inactivation methods on the protective properties of canine-originated probiotic bacteria against adhesion of canine enteropathogens was investigated. Three established dog probiotics, Lactobacillus fermentum VET9A, Lactobacillus plantarum VET14A and Lactobacillus rhamnosus VET16A, and their mixture were assessed using the dog mucus pathogen exclusion model. The pathogens used were Enterococcus canis, Salmonella enterica serovar Typhimurium and Clostridium perfringens. The effect of growth media, one reflecting laboratory and the other manufacture conditions, and viability (viable and heat inactivated, 80°C per 30 min) on the pathogen exclusion properties of probiotics were characterized. Greater pathogen exclusion percentages were noted for probiotics growing in conditions reflecting manufacture when compared to laboratory (P probiotics by heat (80°C per 30 min) increased pathogen exclusion compared with their viable forms (P probiotics to reduce the risk of common infections in dogs. The studied probiotics are promising potential feed additives for dogs. © 2014 The Society for Applied Microbiology.

  11. Inactivation of pathogenic bacteria inoculated onto a Bacto™ agar model surface using TiO2-UVC photocatalysis, UVC and chlorine treatments.

    Science.gov (United States)

    Yoo, S; Ghafoor, K; Kim, S; Sun, Y W; Kim, J U; Yang, K; Lee, D-U; Shahbaz, H M; Park, J

    2015-09-01

    The aim of this study was to study inactivation of different pathogenic bacteria on agar model surface using TiO2-UV photocatalysis (TUVP). A unified food surface model was simulated using Bacto(™) agar, a routinely used microbial medium. The foodborne pathogenic bacteria Escherichia coli K12 (as a surrogate for E. coli O157:H7), Salmonella Typhimurium, Staphylococcus aureus and Listeria monocytogenes were inoculated onto the agar surface, followed by investigation of TUVP-assisted inactivation and morphological changes in bacterial cells. The TUVP process showed higher bacterial inactivation, particularly for Gram-negative bacteria, than UVC alone and a control (dark reaction). A TUVP treatment of 17·2 mW cm(-2) (30% lower than the UVC light intensity) reduced the microbial load on the agar surface by 4·5-6·0 log CFU cm(-2). UVC treatment of 23·7 mW cm(-2) caused 3·0-5·3 log CFU cm(-2) reduction. The use of agar model surface is effective for investigation of bacterial disinfection and TUVP is a promising nonthermal technique. The results showing effects of photocatalysis and other treatments for inactivation of bacterial pathogens on model surface can be useful for applying such processes for disinfection of fruit, vegetables and other similar surfaces. © 2015 The Society for Applied Microbiology.

  12. Safety analysis in subsurface repositories

    International Nuclear Information System (INIS)

    1985-06-01

    The development of mathematical models to represent the repository-geosphere-biosphere system, and the development of a structure for data acquisition, processing, and use to analyse the safety of subsurface repositories, are presented. To study the behavior of radionuclides in geosphere a laboratory to determine the hydrodynamic dispersion coefficient was constructed. (M.C.K.) [pt

  13. Feasibility of a subsurface storage

    International Nuclear Information System (INIS)

    1998-11-01

    This report analyses the notion of subsurface storage under the scientifical, technical and legal aspects. This reflection belongs to the studies about long duration storage carried out in the framework of the axis 3 of the December 30, 1991 law. The report comprises 3 parts. The first part is a synthesis of the complete subsurface storage study: definitions, aim of the report, very long duration storage paradigm, description files of concepts, thematic synthesis (legal aspects, safety, monitoring, sites, seismicity, heat transfers, corrosion, concretes, R and works, handling, tailings and dismantlement, economy..), multi-criteria/multi-concept cross-analysis. The second part deals with the technical aspects of the subsurface storage: safety approach (long duration impact, radiation protection, mastery of effluents), monitoring strategy, macroscopic inventory of B-type waste packages, inventory of spent fuels, glasses, hulls and nozzles, geological contexts in the French territory (sites selection and characterization), on-site activities, hydrogeological and geochemical aspects, geo-technical works and infrastructures organization, subsurface seismic effects, cooling modes (ventilation, heat transfer with the geologic environment), heat transfer research programs (convection, poly-phase cooling in porous media), handling constraints, concretes (use, behaviour, durability), corrosion of metallic materials, technical-economical analysis, international context (experience feedback from Sweden (CLAB) and the USA (Yucca Mountain), other European and French facilities). The last part of the report is a graphical appendix with 3-D views and schemes of the different concepts. (J.S.)

  14. SUBSURFACE VISUAL ALARM SYSTEM ANALYSIS

    International Nuclear Information System (INIS)

    D.W. Markman

    2001-01-01

    The ''Subsurface Fire Hazard Analysis'' (CRWMS M andO 1998, page 61), and the document, ''Title III Evaluation Report for the Surface and Subsurface Communication System'', (CRWMS M andO 1999a, pages 21 and 23), both indicate the installed communication system is adequate to support Exploratory Studies Facility (ESF) activities with the exception of the mine phone system for emergency notification purposes. They recommend the installation of a visual alarm system to supplement the page/party phone system The purpose of this analysis is to identify data communication highway design approaches, and provide justification for the selected or recommended alternatives for the data communication of the subsurface visual alarm system. This analysis is being prepared to document a basis for the design selection of the data communication method. This analysis will briefly describe existing data or voice communication or monitoring systems within the ESF, and look at how these may be revised or adapted to support the needed data highway of the subsurface visual alarm. system. The existing PLC communication system installed in subsurface is providing data communication for alcove No.5 ventilation fans, south portal ventilation fans, bulkhead doors and generator monitoring system. It is given that the data communication of the subsurface visual alarm system will be a digital based system. It is also given that it is most feasible to take advantage of existing systems and equipment and not consider an entirely new data communication system design and installation. The scope and primary objectives of this analysis are to: (1) Briefly review and describe existing available data communication highways or systems within the ESF. (2) Examine technical characteristics of an existing system to disqualify a design alternative is paramount in minimizing the number of and depth of a system review. (3) Apply general engineering design practices or criteria such as relative cost, and degree

  15. Efficacy of Heat Treatment for the Thousand Cankers Disease Vector and Pathogen in Small Black Walnut Logs

    Science.gov (United States)

    A. E. Mayfield; S. W. Fraedrich; A. Taylor; P. Merten; S. W. Myers

    2014-01-01

    Thousand cankers disease, caused by the walnut twig beetle (Pityophthorus juglandis Blackman) and an associated fungal pathogen (Geosmithia morbida M. Kolarõ´k, E. Freeland, C. Utley, and N. Tisserat), threatens the health and commercial use of eastern black walnut (Juglans nigra L.), one of the most economically...

  16. Pandemic influenza A (H1N1) and other respiratory pathogens: clinical insights - from epidemiology to treatment

    NARCIS (Netherlands)

    Smit, P.M.

    2012-01-01

    This thesis contains clinical studies on 2009 pandemic influenza A (H1N1) and other respiratory pathogens. Chapter 1 is a general introduction. Chapter 2 comprises three studies on epidemiology. The first describes epidemiological characteristics of 964 adult outpatients who presented with

  17. Reactive transport codes for subsurface environmental simulation

    NARCIS (Netherlands)

    Steefel, C.I.; Appelo, C.A.J.; Arora, B.; Kalbacher, D.; Kolditz, O.; Lagneau, V.; Lichtner, P.C.; Mayer, K.U.; Meeussen, J.C.L.; Molins, S.; Moulton, D.; Shao, D.; Simunek, J.; Spycher, N.; Yabusaki, S.B.; Yeh, G.T.

    2015-01-01

    A general description of the mathematical and numerical formulations used in modern numerical reactive transport codes relevant for subsurface environmental simulations is presented. The formulations are followed by short descriptions of commonly used and available subsurface simulators that

  18. Hydrogen utilization potential in subsurface sediments

    DEFF Research Database (Denmark)

    Adhikari, Rishi Ram; Glombitza, Clemens; Nickel, Julia

    2016-01-01

    Subsurface microbial communities undertake many terminal electron-accepting processes, often simultaneously. Using a tritium-based assay, we measured the potential hydrogen oxidation catalyzed by hydrogenase enzymes in several subsurface sedimentary environments (Lake Van, Barents Sea, Equatorial...

  19. Photodynamic treatment with mono-phenyl-tri-(N-methyl-4-pyridyl)-porphyrin for pathogen inactivation in cord blood stem cell products.

    Science.gov (United States)

    Trannoy, Laurence L; van Hensbergen, Yvette; Lagerberg, Johan W M; Brand, Anneke

    2008-12-01

    Hematopoietic stem cell transplants and culture of hematopoietic progenitor cells require pathogen-free conditions. The application of a method of pathogen inactivation in red blood cells using photodynamic treatment (PDT) was investigated for the decontamination of cord blood stem cell (CBSC) products. CBSC products, spiked with Gram-positive and Gram-negative bacteria, were treated with PDT using mono-phenyl-tri-(N-methyl-4-pyridyl)-porphyrin (Tri-P(4)) and red light. After PDT, in vitro and in vivo evaluation of the CBSC functions were performed. PDT of CBSC products resulted in the inactivation of the bacteria, with Staphylococcus aureus being the most resistant. Complete decontamination was achieved when CBSC products were contaminated with low titers of bacteria. PDT had no effect on white blood cell viability, the ex vivo expansion potential of the progenitor cells, and their capacity to differentiate to various hematopoietic cell lineages. However, PDT reduced the engraftment of human CBSCs in NOD/SCID mice, particularly affecting the B-cell lineage engraftment. Pathogen inactivation of CBSC with Tri-P(4)-mediated PDT is feasible at contamination level up to 10 to 20 colony-forming units per mL and can be considered when ex vivo expansion culture is anticipated. However, this treatment is not recommended for transplantation purposes at this time. Further investigations may elucidate why engraftment is diminished.

  20. Characterization of accumulated precipitates during subsurface iron removal

    KAUST Repository

    Van Halem, Doris

    2011-01-01

    The principle of subsurface iron removal for drinking water supply is that aerated water is periodically injected into the aquifer through a tube well. On its way into the aquifer, the injected O2-rich water oxidizes adsorbed Fe 2+, creating a subsurface oxidation zone. When groundwater abstraction is resumed, the soluble Fe 2+ is adsorbed and water with reduced Fe concentrations is abstracted for multiple volumes of the injection water. In this article, Fe accumulation deposits in the aquifer near subsurface treatment wells were identified and characterized to assess the sustainability of subsurface iron removal regarding clogging of the aquifer and the potential co-accumulation of other groundwater constituents, such as As. Chemical extraction of soil samples, with Acid-Oxalate and HNO3, showed that Fe had accumulated at specific depths near subsurface iron removal wells after 12 years of operation. Whether it was due to preferred flow paths or geochemical mineralogy conditions; subsurface iron removal clearly favoured certain soil layers. The total Fe content increased between 11.5 and 390.8 mmol/kg ds in the affected soil layers, and the accumulated Fe was found to be 56-100% crystalline. These results suggest that precipitated amorphous Fe hydroxides have transformed to Fe hydroxides of higher crystallinity. These crystalline, compact Fe hydroxides have not noticeably clogged the investigated well and/or aquifer between 1996 and 2008. The subsurface iron removal wells even need less frequent rehabilitation, as drawdown increases more slowly than in normal production wells. Other groundwater constituents, such as Mn, As and Sr were found to co-accumulate with Fe. Acid extraction and ESEM-EDX showed that Ca occurred together with Fe and by X-ray Powder Diffraction it was identified as calcite. © 2010 Elsevier Ltd. All rights reserved.

  1. Integrated geomechanical modelling for deep subsurface damage

    NARCIS (Netherlands)

    Wees, J.D. van; Orlic, B.; Zijl, W.; Jongerius, P.; Schreppers, G.J.; Hendriks, M.

    2001-01-01

    Government, E&P and mining industry increasingly demand fundamental insight and accurate predictions on subsurface and surface deformation and damage due to exploitation of subsurface natural resources, and subsurface storage of energy residues (e.g. CO2). At this moment deformation is difficult to

  2. QMRA (quantitative microbial risk assessment) and HACCP (hazard analysis and critical control points) for management of pathogens in wastewater and sewage sludge treatment and reuse.

    Science.gov (United States)

    Westrell, T; Schönning, C; Stenström, T A; Ashbolt, N J

    2004-01-01

    Hazard Analysis and Critical Control Points (HACCP) was applied for identifying and controlling exposure to pathogenic microorganisms encountered during normal sludge and wastewater handling at a 12,500 m3/d treatment plant utilising tertiary wastewater treatment and mesophilic sludge digestion. The hazardous scenarios considered were human exposure during treatment, handling, soil application and crop consumption, and exposure via water at the wetland-area and recreational swimming. A quantitative microbial risk assessment (QMRA), including rotavirus, adenovirus, haemorrhagic E. coli, Salmonella, Giardia and Cryptosporidium, was performed in order to prioritise pathogen hazards for control purposes. Human exposures were treated as individual risks but also related to the endemic situation in the general population. The highest individual health risk from a single exposure was via aerosols for workers at the belt press for sludge dewatering (virus infection risk = 1). The largest impact on the community would arise if children ingested sludge at the unprotected storage site, although in the worst-case situation the largest number of infections would arise through vegetables fertilised with sludge and eaten raw (not allowed in Sweden). Acceptable risk for various hazardous scenarios, treatment and/or reuse strategies could be tested in the model.

  3. Efficacy of combination treatment with fingolimod (FTY720) plus pathogenic autoantigen in a glucose-6-phosphate isomerase peptide (GPI325-339)-induced arthritis mouse model.

    Science.gov (United States)

    Yoshida, Yuya; Tsuji, Takumi; Watanabe, Sayaka; Matsushima, Ayane; Matsushima, Yuki; Banno, Rie; Fujita, Tetsuro; Kohno, Takeyuki

    2013-01-01

    Fingolimod (FTY720) is known to have a significant therapeutic effect in various autoimmune disease models. Here, we examined FTY720 in a model of rheumatoid arthritis, induced by immunizing DBA/1 mice with a peptide consisting of residues 325 through 339 of glucose-6-phosphate isomerase (GPI325-339). The efficacy was evaluated in terms of macroscopic findings, inflammatory cell infiltration and autoantibody level. Prophylactic administration of FTY720 from the day of immunization significantly suppressed the development of paw swelling, but therapeutic administration of FTY720 from onset of symptoms on day 8-9 was less effective. Interestingly, however, combination treatment with FTY720 plus GPI325-339 for 5 d after onset of symptoms significantly reduced the severity of symptoms in all mice, and no relapse occurred after booster immunization. Taking into account the reported mechanism of action of FTY720, these results indicate that combination treatment with FTY720 plus pathogenic autoantigen might efficiently induce immune tolerance by sequestering circulating autoantigen-specific lymphocytes from blood and peripheral tissues to the secondary lymphoid tissues. Combination treatment with FTY720 plus pathogenic autoantigen may become a breakthrough treatment for remission-induction in patients with autoimmune diseases including rheumatoid arthritis.

  4. The pathogen reduction treatment of platelets with S-59 HCl (Amotosalen) plus ultraviolet A light: genotoxicity profile and hazard assessment.

    Science.gov (United States)

    Tice, Raymond R; Gatehouse, David; Kirkland, David; Speit, Günter

    2007-06-15

    Despite restrictive donor criteria and screening procedures, infections resulting from the transfusion of bacterially contaminated platelet products continue to occur. Pathogen reduction technologies targeting nucleic acids have been developed. However, concerns about the safety of these procedures exist; the main concern being the possible mutagenic and carcinogenic effects of the pathogen-inactivated preparation in the recipient. This report reviews the genotoxicity profile of the S-59 (Amotosalen) plus long wavelength ultraviolet light (UVA) pathogen reduction technology, and assesses the mutagenic and carcinogenic hazards in recipients of treated platelets. S-59, a synthetic heterocyclic psoralen, non-covalently intercalates into the nucleic acids of pathogens and forms crosslinks when UVA photoactivated. Before clinical use, the levels of residual S-59 and free photoproducts are greatly reduced using a 'compound adsorption device' (CAD). In vitro, S-59 is mutagenic in Salmonella typhimurium and mouse lymphoma L5178Y TK(+/-) cells, and is clastogenic in CHO cells. There is reduced activity (Salmonella, CHO cells) or no activity (mouse lymphoma cells) with metabolic activation (S9 mix). When tested up to toxic dose levels, S-59 was negative in the mouse bone marrow micronucleus assay and the rat hepatocyte unscheduled DNA synthesis (UDS) test. Based on comparative studies conducted with S-59 plus UVA-treated platelets (up to 25 times without CAD), any genotoxic effects can be attributed to residual S-59. Considering (1) the known genotoxic mechanism of action for S-59, (2) the negative in vivo studies for S-59 at multiples >40,000x over clinical peak plasma levels, and (3) the fact that the positive in vitro genotoxicity effects for the end product seem due to residual S-59, any mutagenic hazard to a recipient of S-59 plus UVA-treated platelets is negligible and there is no concern about a carcinogenic potential as a consequence of a mutagenic activity. This

  5. Nosocomial pathogens

    African Journals Online (AJOL)

    remains an important problem in intensive care units. Hospital wards had been shown to act as reservoirs of pathogenic microorganisms associated with infection. To assess the prevalence of pathogenic organisms in the environment of the neonatal unit, 92 swabs were randomly collected from cots, incubators and various ...

  6. Subsurface Noble Gas Sampling Manual

    Energy Technology Data Exchange (ETDEWEB)

    Carrigan, C. R. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Sun, Y. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)

    2017-09-18

    The intent of this document is to provide information about best available approaches for performing subsurface soil gas sampling during an On Site Inspection or OSI. This information is based on field sampling experiments, computer simulations and data from the NA-22 Noble Gas Signature Experiment Test Bed at the Nevada Nuclear Security Site (NNSS). The approaches should optimize the gas concentration from the subsurface cavity or chimney regime while simultaneously minimizing the potential for atmospheric radioxenon and near-surface Argon-37 contamination. Where possible, we quantitatively assess differences in sampling practices for the same sets of environmental conditions. We recognize that all sampling scenarios cannot be addressed. However, if this document helps to inform the intuition of the reader about addressing the challenges resulting from the inevitable deviations from the scenario assumed here, it will have achieved its goal.

  7. Geophysical characterization of subsurface barriers

    International Nuclear Information System (INIS)

    Borns, D.J.

    1995-08-01

    An option for controlling contaminant migration from plumes and buried waste sites is to construct a subsurface barrier of a low-permeability material. The successful application of subsurface barriers requires processes to verify the emplacement and effectiveness of barrier and to monitor the performance of a barrier after emplacement. Non destructive and remote sensing techniques, such as geophysical methods, are possible technologies to address these needs. The changes in mechanical, hydrologic and chemical properties associated with the emplacement of an engineered barrier will affect geophysical properties such a seismic velocity, electrical conductivity, and dielectric constant. Also, the barrier, once emplaced and interacting with the in situ geologic system, may affect the paths along which electrical current flows in the subsurface. These changes in properties and processes facilitate the detection and monitoring of the barrier. The approaches to characterizing and monitoring engineered barriers can be divided between (1) methods that directly image the barrier using the contrasts in physical properties between the barrier and the host soil or rock and (2) methods that reflect flow processes around or through the barrier. For example, seismic methods that delineate the changes in density and stiffness associated with the barrier represents a direct imaging method. Electrical self potential methods and flow probes based on heat flow methods represent techniques that can delineate the flow path or flow processes around and through a barrier

  8. Refined gasoline in the subsurface

    International Nuclear Information System (INIS)

    Bruce, L.G.

    1993-01-01

    Geologists today are being called upon not only to find naturally occurring petroleum, but also to help assess and remediate the problem of refined hydrocarbons and other man-made contaminants in the subsurface that may endanger freshwater resources or human health. Petroleum geologists already have many of the skills required and are at ease working with fluid flow in the subsurface. If called for environmental projects, however, they will need to know the language and additional concepts necessary to deal with the hydrogeologic problems. Most releases of refined hydrocarbons and other man-made contaminants occur in the shallow unconfined groundwater environment. This is divided into three zones: the saturated zone, unsaturated zone, and capillary fringe. All three have unique characteristics, and contamination behaves differently in each. Gasoline contamination partitions into four phases in this environment; vapor phase, residual phase, free phase, and dissolved phase. Each has a different degree of mobility in the three subsurface zones. Their direction and rate of movement can be estimated using basic concepts, but geological complexities frequently complicate this issue. 24 refs., 19 figs., 4 tabs

  9. Subsurface transport program: Research summary

    International Nuclear Information System (INIS)

    1987-01-01

    DOE's research program in subsurface transport is designed to provide a base of fundamental scientific information so that the geochemical, hydrological, and biological mechanisms that contribute to the transport and long term fate of energy related contaminants in subsurface ecosystems can be understood. Understanding the physical and chemical mechanisms that control the transport of single and co-contaminants is the underlying concern of the program. Particular attention is given to interdisciplinary research and to geosphere-biosphere interactions. The scientific results of the program will contribute to resolving Departmental questions related to the disposal of energy-producing and defense wastes. The background papers prepared in support of this document contain additional information on the relevance of the research in the long term to energy-producing technologies. Detailed scientific plans and other research documents are available for high priority research areas, for example, in subsurface transport of organic chemicals and mixtures and in the microbiology of deep aquifers. 5 figs., 1 tab

  10. Reliability of pathogen control in direct potable reuse: Performance evaluation and QMRA of a full-scale 1 MGD advanced treatment train.

    Science.gov (United States)

    Pecson, Brian M; Triolo, Sarah C; Olivieri, Simon; Chen, Elise C; Pisarenko, Aleksey N; Yang, Chao-Chun; Olivieri, Adam; Haas, Charles N; Trussell, R Shane; Trussell, R Rhodes

    2017-10-01

    To safely progress toward direct potable reuse (DPR), it is essential to ensure that DPR systems can provide public health protection equivalent to or greater than that of conventional drinking water sources. This study collected data over a one-year period from a full-scale DPR demonstration facility, and used both performance distribution functions (PDFs) and quantitative microbial risk assessment (QMRA) to define and evaluate the reliability of the advanced water treatment facility (AWTF). The AWTF's ability to control enterovirus, Giardia, and Cryptosporidium was characterized using online monitoring of surrogates in a treatment train consisting of ozone, biological activated carbon, microfiltration, reverse osmosis, and ultraviolet light with an advanced oxidation process. This process train was selected to improve reliability by providing redundancy, defined as the provision of treatment beyond the minimum needed to meet regulatory requirements. The PDFs demonstrated treatment that consistently exceeded the 12/10/10-log thresholds for virus, Giardia, and Cryptosporidium, as currently required for potable reuse in California (via groundwater recharge and surface water augmentation). Because no critical process failures impacted pathogen removal performance during the yearlong testing, hypothetical failures were incorporated into the analysis to understand the benefit of treatment redundancy on performance. Each unit process was modeled with a single failure per year lasting four different failure durations: 15 min, 60 min, 8 h, and 24 h. QMRA was used to quantify the impact of failures on pathogen risk. The median annual risk of infection for Cryptosporidium was 4.9 × 10 -11 in the absence of failures, and reached a maximum of 1.1 × 10 -5 assuming one 24-h failure per process per year. With the inclusion of free chlorine disinfection as part of the treatment process, enterovirus had a median annual infection risk of 1.5 × 10 -14 (no failures) and

  11. Characterization of accumulated precipitates during subsurface iron removal

    International Nuclear Information System (INIS)

    Halem, Doris van; Vet, Weren de; Verberk, Jasper; Amy, Gary; Dijk, Hans van

    2011-01-01

    Research highlights: → Accumulated iron was not found to clog the well or aquifer after 12 years of subsurface iron removal. → 56-100% of accumulated iron hydroxides were found to be crystalline. → Subsurface iron removal favoured certain soil layers, either due to hydraulics or mineralogy. → Other groundwater constituents, such as manganese and arsenic were found to co-accumulate with iron. - Abstract: The principle of subsurface iron removal for drinking water supply is that aerated water is periodically injected into the aquifer through a tube well. On its way into the aquifer, the injected O 2 -rich water oxidizes adsorbed Fe 2+ , creating a subsurface oxidation zone. When groundwater abstraction is resumed, the soluble Fe 2+ is adsorbed and water with reduced Fe concentrations is abstracted for multiple volumes of the injection water. In this article, Fe accumulation deposits in the aquifer near subsurface treatment wells were identified and characterized to assess the sustainability of subsurface iron removal regarding clogging of the aquifer and the potential co-accumulation of other groundwater constituents, such as As. Chemical extraction of soil samples, with Acid-Oxalate and HNO 3 , showed that Fe had accumulated at specific depths near subsurface iron removal wells after 12 years of operation. Whether it was due to preferred flow paths or geochemical mineralogy conditions; subsurface iron removal clearly favoured certain soil layers. The total Fe content increased between 11.5 and 390.8 mmol/kg ds in the affected soil layers, and the accumulated Fe was found to be 56-100% crystalline. These results suggest that precipitated amorphous Fe hydroxides have transformed to Fe hydroxides of higher crystallinity. These crystalline, compact Fe hydroxides have not noticeably clogged the investigated well and/or aquifer between 1996 and 2008. The subsurface iron removal wells even need less frequent rehabilitation, as drawdown increases more slowly than in

  12. Microbial pathogens in source and treated waters from drinking water treatment plants in the United States and implications for human health

    Science.gov (United States)

    King, Dawn N.; Donohue, Maura J.; Vesper, Stephen J.; Villegas, Eric N.; Ware, Michael W.; Vogel, Megan E.; Furlong, Edward; Kolpin, Dana W.; Glassmeyer, Susan T.; Pfaller, Stacy

    2016-01-01

    An occurrence survey was conducted on selected pathogens in source and treated drinking water collected from 25 drinking water treatment plants (DWTPs) in the United States. Water samples were analyzed for the protozoa Giardia and Cryptosporidium (EPA Method 1623); the fungi Aspergillus fumigatus, Aspergillus niger and Aspergillus terreus (quantitative PCR [qPCR]); and the bacteria Legionella pneumophila (qPCR), Mycobacterium avium, M. avium subspecies paratuberculosis, and Mycobacterium intracellulare (qPCR and culture). Cryptosporidium and Giardia were detected in 25% and in 46% of the source water samples, respectively (treated waters were not tested). Aspergillus fumigatus was the most commonly detected fungus in source waters (48%) but none of the three fungi were detected in treated water. Legionella pneumophila was detected in 25% of the source water samples but in only 4% of treated water samples. M. avium and M. intracellulare were both detected in 25% of source water, while all three mycobacteria were detected in 36% of treated water samples. Five species of mycobacteria, Mycobacterium mucogenicum, Mycobacterium phocaicum, Mycobacterium triplex, Mycobacterium fortuitum, and Mycobacterium lentiflavum were cultured from treated water samples. Although these DWTPs represent a fraction of those in the U.S., the results suggest that many of these pathogens are widespread in source waters but that treatment is generally effective in reducing them to below detection limits. The one exception is the mycobacteria, which were commonly detected in treated water, even when not detected in source waters.

  13. Microbial pathogens in source and treated waters from drinking water treatment plants in the United States and implications for human health.

    Science.gov (United States)

    King, Dawn N; Donohue, Maura J; Vesper, Stephen J; Villegas, Eric N; Ware, Michael W; Vogel, Megan E; Furlong, Edward F; Kolpin, Dana W; Glassmeyer, Susan T; Pfaller, Stacy

    2016-08-15

    An occurrence survey was conducted on selected pathogens in source and treated drinking water collected from 25 drinking water treatment plants (DWTPs) in the United States. Water samples were analyzed for the protozoa Giardia and Cryptosporidium (EPA Method 1623); the fungi Aspergillus fumigatus, Aspergillus niger and Aspergillus terreus (quantitative PCR [qPCR]); and the bacteria Legionella pneumophila (qPCR), Mycobacterium avium, M. avium subspecies paratuberculosis, and Mycobacterium intracellulare (qPCR and culture). Cryptosporidium and Giardia were detected in 25% and in 46% of the source water samples, respectively (treated waters were not tested). Aspergillus fumigatus was the most commonly detected fungus in source waters (48%) but none of the three fungi were detected in treated water. Legionella pneumophila was detected in 25% of the source water samples but in only 4% of treated water samples. M. avium and M. intracellulare were both detected in 25% of source water, while all three mycobacteria were detected in 36% of treated water samples. Five species of mycobacteria, Mycobacterium mucogenicum, Mycobacterium phocaicum, Mycobacterium triplex, Mycobacterium fortuitum, and Mycobacterium lentiflavum were cultured from treated water samples. Although these DWTPs represent a fraction of those in the U.S., the results suggest that many of these pathogens are widespread in source waters but that treatment is generally effective in reducing them to below detection limits. The one exception is the mycobacteria, which were commonly detected in treated water, even when not detected in source waters. Published by Elsevier B.V.

  14. Identification and expression analysis of WRKY transcription factor genes in canola (Brassica napus L. in response to fungal pathogens and hormone treatments

    Directory of Open Access Journals (Sweden)

    Deyholos Michael K

    2009-06-01

    expression patterns. Conclusion We identified a set of 13 BnWRKY genes from among 16 BnWRKY genes assayed, that are responsive to both fungal pathogens and hormone treatments, suggesting shared signaling mechanisms for these responses. This study suggests that a large number of BnWRKY proteins are involved in the transcriptional regulation of defense-related genes in response to fungal pathogens and hormone stimuli.

  15. Thermoradiation treatment of sewage sludge to eliminate pathogens for safe use as fertilizer and animal feed supplement

    International Nuclear Information System (INIS)

    Sivinski, H.D.; Whitfield, W.J.

    1975-01-01

    This paper describes a research program titled ''Waste Resources Utilization'' using a new technique called thermoradiation to destroy pathogenic organisms in sewage sludge. The thermoradiated sewage sludge will be used to study the feasibility of use for safe land application as fertilizer and soil conditioner and use as a feed supplement for ruminant animals. Experiments to date have shown good results for sludge disinfection of resistant bacteria, viruses, and parasites. Thermoradiation experiments are being carried out at a temperature of 65 0 C combined with 160 krad gamma dose for a total of 2000 pounds of dried treated sludge. The sludge will be shipped to New Mexico State University for the feeding studies and land application studies. (auth)

  16. Bio-hybridization of nanobactericides with cellulose films for effective treatment against members of ESKAPE multi-drug-resistant pathogens

    Science.gov (United States)

    Baker, Syed; Volova, Tatiana; Prudnikova, Svetlana V.; Shumilova, Anna A.; Perianova, Olga V.; Zharkov, Sergey M.; Kuzmin, Andrey; Olga, Kondratenka; Bogdan, Kiryukhin; Shidlovskiy, Ivan P.; Potkina, Zoya K.; Khohlova, Olga Y.; Lobova, Tatiana I.

    2018-03-01

    The rapid expansion of drug-resistant pathogens has created huge global impact and development of novel antimicrobial leads is one of the top priority studies in the current scenario. The present study aims to develop bio-hybridized nanocellulose films which comprise of phytogenic silver nanobactericides. The nanobactericides were synthesized by treating 1 mM silver nitrate with aqueous extract of Chamerion angustifolium which reduced the metal salt to produce polydispersed nanobactericides which were tested against the members of ESKAPE drug-resistant communities. The synthesized silver nanobactericides were subjected to characterization with UV-visible spectra which displayed maximum absorbance at 408 nm. The bio-molecular interaction of phyto-constituents to mediate synthesis and stabilization of nanobactericides was studied with Fourier-transform infrared spectroscopy (FTIR) which depicted functional groups associated with nanobactericides. The crystalline nature was studied with X-ray diffraction (XRD) which showed Bragg's intensities at 2θ angle which denoted (111), (200), (220), and (311) planes. The morphological characteristics of silver nanobactericides were defined with transmission electron Microscopy (TEM) image which displayed polydispersity of silver nanobactericides with size ranging from 2 to 40 nm. The synthesized nanobactericides showed a significant activity against MRSA strain with 21 mm zone of inhibition. The minimal inhibitory concentration of silver nanobactericides to inhibit the growth of test pathogens was also determined which ranged between 0.625 and 1.25 μg/ml. The silver nanobactericides were bio-hybridized onto nanocellulose films produced by Komagataeibacter xylinus B-12068 culture strain. The films were dried to determine the mechanical properties which showed increased in Young's modulus and tensile strength in comparison with control bacterial cellulose films. Overall, the results obtained in the present investigation are

  17. Phylogenetic relationships among subsurface microorganisms

    Energy Technology Data Exchange (ETDEWEB)

    Nierzwicki-Bauer, S.A.

    1991-01-01

    This project involves the development of group specific 16S ribosomal RNA-targeted oligonucleotide hybridization probes for the rapid detection of specific types of subsurface organisms (e.g., groups of microbes that share certain physiological traits). Major accomplishments for the period of 6/91 to 12/1/91 are described. Nine new probes have been synthesized on the basis of published 16S rRNA sequence data from the Ribosomal Database Project. We have initiated rapid screening of many of the subsurface microbial isolates obtained from the P24 borehole at the Savannah River Site. To date, we have screened approximately 50% of the isolates from P24. We have optimized our {und in situ} hybridization technique, and have developed a cell blot hybridization technique to screen 96 samples on a single blot. This is much faster than reading 96 individual slides. Preliminary experiments have been carried out which indicate specific nutrients can be used to amplify rRNA only in those organisms capable of metabolizing those nutrients. 1 tab., 2 figs.

  18. Distribution of unusual archaea in subsurface biosphere

    Science.gov (United States)

    Takai, Ken; Inagaki, Fumio; Horikoshi, Koki

    Recent microbiological surveys of terrestrial and oceanic subsurface biospheres have revealed that sizable microbial populations are present in global subsurface environments. However, little is known about the community structure, genetic diversity, and distribution pattern of subsurface bacteria and archaea since these surveys are mainly dependent on microscopic observations and conventional cultivation techniques. Culture-independent, molecular phylogenetic techniques are now utilized to explore microbial communities in various subsurface environments such as underground mines, subterrestrial rocks, continental and ocean oil reservoirs, subseafloor sediments and subvent microbial ecosystems. It has become apparent that unique archaeal components are commonly present in these subsurface microbial habitats. The most frequently recovered genetic signatures are of members of the hyperthermophiles Thermococcus. Their unexpected ubiquity even in non-extreme subsurface environments may represent the great biomass potential of probably dormant extremophilic archaea in the global subsurface biosphere. Archaeal populations in deep-sea hydrothermal vents and subvent environments might serve as sources of dormant extremophiles. It therefore appears likely that global and local ocean hydrothermal activities have had a persistent and significant impact on the formation of subsurface microbial communities and the distribution of subsurface microorganisms.

  19. Controlling Bacterial Pathogens in Water for Reuse: Treatment Technologies for Water Recirculation in the Blue Diversion Autarky Toilet

    Directory of Open Access Journals (Sweden)

    Mi T. Nguyen

    2017-12-01

    Full Text Available HighlightBacterial growth in fecally-contaminated water is highly variable and dependent on several factors.Regrowth occurs after chlorination (low doses, no residual.Indigenous microbial communities variably impact bacterial growth.A combination of treatments can both inactivate and inhibit growth.The Blue Diversion AUTARKY Toilet is a urine-diverting toilet with on-site treatment. The toilet is being developed to provide a safe and affordable sanitation technology for people who lack access to sewer-based sanitation. Water used for personal hygiene, hand washing, and flushing to rinse urine- and feces-collection bowls is treated, stored, and recycled for reuse to reduce reliance on external water supplies. The system provides an opportunity to investigate hygiene of water for reuse following treatment. Treatment in the toilet includes a Biologically Activated Membrane Bioreactor (BAMBi followed by a secondary treatment technology. To identify effective secondary treatment, three options, including granular activated carbon (GAC only, GAC+chlorine (sodium hypochlorite, and GAC+electrolysis are considered based on the bacterial inactivation and growth inhibition efficiency. Four different hygiene-relevant bacteria are tested: Escherichia coli, Enterococcus faecalis, Pseudomonas aeruginosa, and Salmonella typhimurium. Our evaluation demonstrates that—despite treatment of water with the BAMBi—E. coli, P. aeruginosa, and S. typhimurium have the potential to grow during storage in the absence of microbial competition. Including the indigenous microbial community influences bacterial growth in different ways: E. coli growth decreases but P. aeruginosa growth increases relative to no competition. The addition of the secondary treatment options considerably improves water quality. A column of GAC after the BAMBi reduces E. coli growth potential by 2 log10, likely due to the reduction of carbon sources. Additional treatments including chlorination

  20. Cultivating the Deep Subsurface Microbiome

    Science.gov (United States)

    Casar, C. P.; Osburn, M. R.; Flynn, T. M.; Masterson, A.; Kruger, B.

    2017-12-01

    Subterranean ecosystems are poorly understood because many microbes detected in metagenomic surveys are only distantly related to characterized isolates. Cultivating microorganisms from the deep subsurface is challenging due to its inaccessibility and potential for contamination. The Deep Mine Microbial Observatory (DeMMO) in Lead, SD however, offers access to deep microbial life via pristine fracture fluids in bedrock to a depth of 1478 m. The metabolic landscape of DeMMO was previously characterized via thermodynamic modeling coupled with genomic data, illustrating the potential for microbial inhabitants of DeMMO to utilize mineral substrates as energy sources. Here, we employ field and lab based cultivation approaches with pure minerals to link phylogeny to metabolism at DeMMO. Fracture fluids were directed through reactors filled with Fe3O4, Fe2O3, FeS2, MnO2, and FeCO3 at two sites (610 m and 1478 m) for 2 months prior to harvesting for subsequent analyses. We examined mineralogical, geochemical, and microbiological composition of the reactors via DNA sequencing, microscopy, lipid biomarker characterization, and bulk C and N isotope ratios to determine the influence of mineralogy on biofilm community development. Pre-characterized mineral chips were imaged via SEM to assay microbial growth; preliminary results suggest MnO2, Fe3O4, and Fe2O3 were most conducive to colonization. Solid materials from reactors were used as inoculum for batch cultivation experiments. Media designed to mimic fracture fluid chemistry was supplemented with mineral substrates targeting metal reducers. DNA sequences and microscopy of iron oxide-rich biofilms and fracture fluids suggest iron oxidation is a major energy source at redox transition zones where anaerobic fluids meet more oxidizing conditions. We utilized these biofilms and fluids as inoculum in gradient cultivation experiments targeting microaerophilic iron oxidizers. Cultivation of microbes endemic to DeMMO, a system

  1. High-throughput sequencing reveals microbial communities in drinking water treatment sludge from six geographically distributed plants, including potentially toxic cyanobacteria and pathogens.

    Science.gov (United States)

    Xu, Hangzhou; Pei, Haiyan; Jin, Yan; Ma, Chunxia; Wang, Yuting; Sun, Jiongming; Li, Hongmin

    2018-04-10

    The microbial community structures of drinking water treatment sludge (DWTS) generated for raw water (RW) from different locations and with different source types - including river water, lake water and reservoir water -were investigated using high-throughput sequencing. Because the unit operations in the six DWTPs were similar, community composition in fresh sludge may be determined by microbial community in the corresponding RW. Although Proteobacteria, Cyanobacteria, Bacteroidetes, Firmicutes, Verrucomicrobia, and Planctomycetes were the dominant phyla among the six DWTS samples, no single phylum exhibited similar abundance across all the samples, owing to differences in total phosphorus, chemical oxygen demand, Al, Fe, and chloride in RW. Three genera of potentially toxic cyanobacteria (Planktothrix, Microcystis and Cylindrospermopsis), and four potential pathogens (Escherichia coli, Bacteroides ovatus, Prevotella copri and Rickettsia) were found in sludge samples. Because proliferation of potentially toxic cyanobacteria and Rickettsia in RW was mainly affected by nutrients, while growth of Escherichia coli, Bacteroides ovatus and Prevotella copri in RW may be influenced by Fe, control of nutrients and Fe in RW is essential to decrease toxic cyanobacteria and pathogens in DWTS. Copyright © 2018 Elsevier B.V. All rights reserved.

  2. Targeting multiple pathogenic mechanisms with polyphenols for the treatment of Alzheimer’s disease: Experimental approach and therapeutic implications

    Directory of Open Access Journals (Sweden)

    Jun eWang

    2014-03-01

    Full Text Available Alzheimer’s disease (AD is the most prevalent neurodegenerative disease of aging and currently has no cure. Its onset and progression are influenced by multiple factors. There is growing consensus that successful treatment will rely on simultaneously targeting multiple pathological features of AD. Polyphenol compounds have many proven health benefits. In this study, we tested the hypothesis that combining three polyphenolic preparations (grape seed extract, resveratrol and Concord grape juice extract, with different polyphenolic compositions and partially redundant bioactivities, may simultaneously and synergistically mitigate amyloid-β (Aβ mediated neuropathology and cognitive impairments in a mouse model of AD. We found that administration of the polyphenols in combination did not alter the profile of bioactive polyphenol metabolites in the brain. We also found that combination treatment resulted in better protection against cognitive impairments compared to individual treatments, in J20 AD mice. Electrophysiological examination showed that acute treatment with select brain penetrating polyphenol metabolites, derived from these polyphenols, improved oligomeric Aβ (oAβ-induced long term potentiation (LTP deficits in hippocampal slices. Moreover, we found greatly reduced total amyloid content in the brain following combination treatment. Our studies provided experimental evidence that application of polyphenols targeting multiple disease-mechanisms may yield a greater likelihood of therapeutic efficacy.

  3. Efficacy of Elimination of Pasteurella pneumotropica from a Mouse Specific Pathogen-Free Barrier Breeding Unit through Treatment with Enrofloxacin

    DEFF Research Database (Denmark)

    Østergaard, Grete; Arnorsdottir, Stefania Embla; Schumacher-Petersen, Camilla

    2010-01-01

    and administered in drinking water based on an assumed daily water intake of 150 mL/kg body weight. Prior to treatment, all imports of mice (caesarean section or embryo transfer) were stopped. The populations of the various mouse strains bred in the barrier were minimized. Measures were taken to ensure there would......, and enrofloxacin (EF) was chosen as the most appropriate antibiotic to treat this infection. Various doses of EF were tested for toxic effects on NMRI-mice prior to the treatment, and since no negative effects of EF, regardlessof dose tested, were observed, the highest dose of 150 mg/kg body weight was chosen...

  4. Modeling the subsurface structure of sunspots

    NARCIS (Netherlands)

    Moradi, H.; Baldner, C.; Birch, A.C.; Braun, D.C.; Cameron, R.H.; Duvall Jr., T.L.; Gizon, L.; Haber, D.; Hanasoge, S.M.; Hindman, B.W.; Jackiewicz, J.; Khomenko, E.; Komm, R.; Rajaguru, P.; Rempel, M.; Roth, M.; Schlichenmaier, R.; Schunker, H.; Spruit, H.C.; Strassmeier, K.G.; Thompson, M.J.; Zharkov, S.

    2010-01-01

    While sunspots are easily observed at the solar surface, determining their subsurface structure is not trivial. There are two main hypotheses for the subsurface structure of sunspots: the monolithic model and the cluster model. Local helioseismology is the only means by which we can investigate

  5. Transfusion of pooled buffy coat platelet components prepared with photochemical pathogen inactivation treatment: the euroSPRITE trial

    NARCIS (Netherlands)

    D.J. van Rhenen (Dirk Jan); S. Marblie (Stephane); M. Laforet (Michel); K. Davis (Kathryn); M. Conlan (Maureen); B. Lioure (Bruno); H. Gulliksson (Hans); J.P. Cazenave; P. Metzel (Peyton); D. Pamphilon (Derwood); L. Corash (Laurence); J. Flament (Jocelyne); P. Ljungman (Per); H. Kluter; H. Vermeij (Hans); V. Mayaudon (Veronique); L. Lin (Lily); M.C. Kappers-Klunne (Mies); D. Buchholz (Don); G.E. de Greef (Georgine)

    2003-01-01

    textabstractA nucleic acid-targeted photochemical treatment (PCT) using amotosalen HCl (S-59) and ultraviolet A (UVA) light was developed to inactivate viruses, bacteria, protozoa, and leukocytes in platelet components. We conducted a controlled, randomized, double-blinded trial in thrombocytopenic

  6. Live-dead discrimination analysis, qPCR assessment for opportunistic pathogens, and population analysis at ozone wastewater treatment plants.

    Science.gov (United States)

    Jäger, Thomas; Alexander, Johannes; Kirchen, Silke; Dötsch, Andreas; Wieland, Arne; Hiller, Christian; Schwartz, Thomas

    2018-01-01

    In respect to direct and indirect water reuse, the microbiological quality of treated wastewater is highly important. Conventional wastewater treatment plants are normally not equipped with advanced technologies for the elimination of bacteria. Molecular biology analyses were combined with live-dead discrimination analysis of wastewater population using Propidium monoazide (PMA) to study population shifts during ozonation (1 g ozone/g DOC) at a municipal wastewater treatment plant. Escherichia coli, enterococci, and Pseudomonas aeruginosa were quantified by polymerase chain reaction (qPCR) and the whole wastewater population was analyzed by metagenomic sequencing. The PMA-qPCR experiments showed that the abundances of P. aeruginosa didn't change by ozone treatment, whereas a reduction was observed for E. coli and enterococci. Results comparing conventional cultivation experiments with PMA-qPCR underlined the presence of viable but not culturable cells (VBNC) and their regrowth potential after ozone treatment. Illumina HiSeq sequencing results with and without PMA treatment demonstrated high population similarities in water samples originating from ozone inflow sampling sides. Upon using PMA treatment after ozonation, population shifts became visible and also underlined the importance of PMA treatment for the evaluation of elimination and selection processes during ozonation at WWTPs. Amongst a number of 14 most abundant genera identified in the inflow samples, 9 genera were found to be reduced, whereas 4 genera increased in relative abundance and 1 genus almost remained constant. The strongest increase in relative abundance after ozonation was detected for Oscillatoria spp., Microcoleus spp. and Nitrospira spp. Beside this, a continuous release of Pseudomonas spp. (including P. aeruginosa) to the downstream receiving body was confirmed. Regrowth experiments demonstrated a high prevalence of P. aeruginosa as part of the surviving bacterial population. Summing

  7. Subsurface Nonlinear Dynamical Heating and ENSO Asymmetry

    Science.gov (United States)

    Hayashi, Michiya; Jin, Fei-Fei

    2017-12-01

    This study presents evidence of interannual to interdecadal variabilities residing in the subsurface nonlinear dynamical heating (NDH) along the equatorial Pacific thermocline based on ocean reanalysis products. In association with a flattened thermocline and drastic halt of the Equatorial Undercurrent, the NDH increases sharply right after a peak of the strong El Niño, reducing the linear anomalous advective subsurface cooling by 30%. As the result, subsurface cold signals in the west are significantly weakened as it reaches the easternmost Pacific, causing less surface cooling in the east and thus weakening the subsequent La Niña. Therefore, the subsurface NDH contributes to asymmetry in both the magnitude and structure between El Niño and La Niña. The acute positive subsurface NDH associated with strong El Niño events leads to substantial variations in its decadal means and serves as a potential source for tropical Pacific decadal to interdecadal variabilities.

  8. Efficacy of Elimination of Pasteurella pneumotropica from a Mouse Specific Pathogen-Free Barrier Breeding Unit through Treatment with Enrofloxacin

    DEFF Research Database (Denmark)

    Østergaard, Grete; Arnorsdottir, Stefania Embla; Schumacher-Petersen, Camilla

    2010-01-01

    for 48 h. Colonies with suspect morphology were incubated on blood agar plates and MacConkey agar plates. Isolates growing on blood agar, but not on MacConkey, were tested for cytochromoxidase activity. Oxidase-positive colonies were grown in Heart Infusion Broth for motility testing and indol testing......, and enrofloxacin (EF) was chosen as the most appropriate antibiotic to treat this infection. Various doses of EF were tested for toxic effects on NMRI-mice prior to the treatment, and since no negative effects of EF, regardlessof dose tested, were observed, the highest dose of 150 mg/kg body weight was chosen...... and administered in drinking water based on an assumed daily water intake of 150 mL/kg body weight. Prior to treatment, all imports of mice (caesarean section or embryo transfer) were stopped. The populations of the various mouse strains bred in the barrier were minimized. Measures were taken to ensure there would...

  9. Hot water treatment to reduce incidence of black foot pathogens in young grapevines grown in cool climates

    Directory of Open Access Journals (Sweden)

    Carolyn BLEACH

    2013-09-01

    Full Text Available Black foot disease causes death of infected grapevines but management of this soil-borne disease by preventative measures such as pre-planting fungicide dips has not been totally effective. Hot water treatment (HWT; 50°C for 30 min of young dormant grapevine plants has been shown to significantly reduce infection. However, it has been reported to cause unacceptable damage to young vines in cooler climate countries like New Zealand, so this study examined the effects of different HWT protocols on the New Zealand black foot isolates. In vitro testing of different HWT protocols was conducted on conidia, mycelium and detached, inoculated grapevine canes using three isolates each of the species I. liriodendri (“C”. liriodendri and the complexes, I. radicicola (“C”. destructans and I. macrodidyma (“C”. macrodidymum. Heat treatments greater than 40°C for 5 min killed all conidia (P<0.001, and treatments greater than 47°C for 30 min inhibited (P≤0.003 further growth of treated mycelium plugs for all but one isolate. Within cane pieces, infection by Ilyonectria (“Cylindrocarpon” isolates was significantly reduced (P<0.001 by 30 min at 48.5 and 50°C. Additionally, these studies showed different responses to the different treatments for the three isolates of each species complex and differences between species. In field trials, HWT of 48.5 and 50°C for 30 min significantly reduced disease incidence in dormant plants to 0% (P≤0.001. This study confirmed that HWT of 48.5°C for 30 min could be used to eliminate black foot disease in dormant nursery grapevines grown in New Zealand prior to their use for establishing new vineyards.

  10. Small regulatory RNAs of the RNA interference (RNAi) pathway as a prophylactic treatment against fish pathogenic viruses

    DEFF Research Database (Denmark)

    Schyth, Brian Dall; Hajiabadi, Seyed Amir Hossein Jalali; Kristensen, Lasse Bøgelund Juel

    2011-01-01

    . The mechanism can be programmed with several types of small double stranded RNAs - the type of which defines the destiny of the target. One such class of regulatory RNAs called microRNAs are upregulated due to various physiological responses of the cell and they suppress many genes simultaneously believed...... septicemia virus (VHSV) and examples of some of our results on delivery and effect of siRNAs designed to target viral genes of VHSV. The VHS disease causes high mortalities in salmonid fish aquacultures why intervention strategies are highly in demand.......Small RNAs acting in the recently discovered gene regulatory mechanism called RNA interference has a potential as diagnostic signatures of disease and immunological state and when produced synthetically as prophylactic treatment of such diseases. In the RNAi mechanism the cell produces different...

  11. Modeling subsurface contamination at Fernald

    International Nuclear Information System (INIS)

    Jones, B.W.; Flinn, J.C.; Ruwe, P.R.

    1994-01-01

    The Department of Energy's Fernald site is located about 20 miles northwest of Cincinnati. Fernald produced refined uranium metal products from ores between 1953 and 1989. The pure uranium was sent to other DOE sites in South Carolina, Tennessee, Colorado,and Washington in support of the nation's strategic defense programs. Over the years of large-scale uranium production, contamination of the site's soil and groundwater occurred.The contamination is of particular concern because the Fernald site is located over the Great Miami Aquifer, a designated sole-source drinking water aquifer. Contamination of the aquifer with uranium was found beneath the site, and migration of the contamination had occurred well beyond the site's southern boundary. As a result, Fernald was placed on the National Priorities (CERCLA/Superfund) List in 1989. Uranium production at the site ended in 1989,and Fernald's mission has been changed to one of environmental restoration. This paper presents information about computerized modeling of subsurface contamination used for the environmental restoration project at Fernald

  12. Introduction: energy and the subsurface

    Science.gov (United States)

    Viswanathan, Hari S.

    2016-01-01

    This theme issue covers topics at the forefront of scientific research on energy and the subsurface, ranging from carbon dioxide (CO2) sequestration to the recovery of unconventional shale oil and gas resources through hydraulic fracturing. As such, the goal of this theme issue is to have an impact on the scientific community, broadly, by providing a self-contained collection of articles contributing to and reviewing the state-of-the-art of the field. This collection of articles could be used, for example, to set the next generation of research directions, while also being useful as a self-study guide for those interested in entering the field. Review articles are included on the topics of hydraulic fracturing as a multiscale problem, numerical modelling of hydraulic fracture propagation, the role of computational sciences in the upstream oil and gas industry and chemohydrodynamic patterns in porous media. Complementing the reviews is a set of original research papers covering growth models for branched hydraulic crack systems, fluid-driven crack propagation in elastic matrices, elastic and inelastic deformation of fluid-saturated rock, reaction front propagation in fracture matrices, the effects of rock mineralogy and pore structure on stress-dependent permeability of shales, topographic viscous fingering and plume dynamics in porous media convection. This article is part of the themed issue ‘Energy and the subsurface’. PMID:27597784

  13. Influence of groundwater composition on subsurface iron and arsenic removal

    KAUST Repository

    Moed, David H.

    2012-06-01

    Subsurface arsenic and iron removal (SAR/SIR) is a novel technology to remove arsenic, iron and other groundwater components by using the subsoil. This research project investigated the influence of the groundwater composition on subsurface treatment. In anoxic sand column experiments, with synthetic groundwater and virgin sand, it was found that several dissolved substances in groundwater compete for adsorption sites with arsenic and iron. The presence of 0.01 mmol L -1phosphate, 0.2 mmol L -1 silicate, and 1 mmol L -1 nitrate greatly reduced the efficiency of SAR, illustrating the vulnerability of this technology in diverse geochemical settings. SIR was not as sensitive to other inorganic groundwater compounds, though iron retardation was limited by 1.2 mmol L -1 calcium and 0.06 mmol L -1 manganese. © IWA Publishing 2012.

  14. Foodborne pathogens

    Directory of Open Access Journals (Sweden)

    Thomas Bintsis

    2017-06-01

    Full Text Available Foodborne pathogens are causing a great number of diseases with significant effects on human health and economy. The characteristics of the most common pathogenic bacteria (Bacillus cereus, Campylobacter jejuni, Clostridium botulinum, Clostridium perfringens, Cronobacter sakazakii, Esherichia coli, Listeria monocytogenes, Salmonella spp., Shigella spp., Staphylococccus aureus, Vibrio spp. and Yersinia enterocolitica, viruses (Hepatitis A and Noroviruses and parasites (Cyclospora cayetanensis, Toxoplasma gondii and Trichinella spiralis, together with some important outbreaks, are reviewed. Food safety management systems based on to classical hazard-based approach has been proved to be inefficient, and risk-based food safety approach is now suggested from leading researchers and organizations. In this context, a food safety management system should be designed in a way to estimate the risks to human health from food consumption and to identify, select and implement mitigation strategies in order to control and reduce these risks. In addition, the application of suitable food safety education programs for all involved people in the production and consumption of foods is suggested.

  15. DOE UST interim subsurface barrier technologies workshop

    International Nuclear Information System (INIS)

    1992-09-01

    This document contains information which was presented at a workshop regarding interim subsurface barrier technologies that could be used for underground storage tanks, particularly the tank 241-C-106 at the Hanford Reservation

  16. SUBSURFACE REPOSITORY INTEGRATED CONTROL SYSTEM DESIGN

    International Nuclear Information System (INIS)

    Randle, D.C.

    2000-01-01

    The primary purpose of this document is to develop a preliminary high-level functional and physical control system architecture for the potential repository at Yucca Mountain. This document outlines an overall control system concept that encompasses and integrates the many diverse process and communication systems being developed for the subsurface repository design. This document presents integrated design concepts for monitoring and controlling the diverse set of subsurface operations. The Subsurface Repository Integrated Control System design will be composed of a series of diverse process systems and communication networks. The subsurface repository design contains many systems related to instrumentation and control (I andC) for both repository development and waste emplacement operations. These systems include waste emplacement, waste retrieval, ventilation, radiological and air monitoring, rail transportation, construction development, utility systems (electrical, lighting, water, compressed air, etc.), fire protection, backfill emplacement, and performance confirmation. Each of these systems involves some level of I andC and will typically be integrated over a data communications network throughout the subsurface facility. The subsurface I andC systems will also interface with multiple surface-based systems such as site operations, rail transportation, security and safeguards, and electrical/piped utilities. In addition to the I andC systems, the subsurface repository design also contains systems related to voice and video communications. The components for each of these systems will be distributed and linked over voice and video communication networks throughout the subsurface facility. The scope and primary objectives of this design analysis are to: (1) Identify preliminary system-level functions and interfaces (Section 6.2). (2) Examine the overall system complexity and determine how and on what levels the engineered process systems will be monitored

  17. Evaluating roadway subsurface drainage practices - phase II.

    Science.gov (United States)

    2015-04-01

    Well-performing subsurface drainage systems form an important aspect of pavement design by the Iowa Department of : Transportation (DOT). The recently completed Iowa Highway Research Board (IHRB) project TR-643 provided extensive : insights into Iowa...

  18. SUBSURFACE REPOSITORY INTEGRATED CONTROL SYSTEM DESIGN

    Energy Technology Data Exchange (ETDEWEB)

    D.C. Randle

    2000-01-07

    The primary purpose of this document is to develop a preliminary high-level functional and physical control system architecture for the potential repository at Yucca Mountain. This document outlines an overall control system concept that encompasses and integrates the many diverse process and communication systems being developed for the subsurface repository design. This document presents integrated design concepts for monitoring and controlling the diverse set of subsurface operations. The Subsurface Repository Integrated Control System design will be composed of a series of diverse process systems and communication networks. The subsurface repository design contains many systems related to instrumentation and control (I&C) for both repository development and waste emplacement operations. These systems include waste emplacement, waste retrieval, ventilation, radiological and air monitoring, rail transportation, construction development, utility systems (electrical, lighting, water, compressed air, etc.), fire protection, backfill emplacement, and performance confirmation. Each of these systems involves some level of I&C and will typically be integrated over a data communications network throughout the subsurface facility. The subsurface I&C systems will also interface with multiple surface-based systems such as site operations, rail transportation, security and safeguards, and electrical/piped utilities. In addition to the I&C systems, the subsurface repository design also contains systems related to voice and video communications. The components for each of these systems will be distributed and linked over voice and video communication networks throughout the subsurface facility. The scope and primary objectives of this design analysis are to: (1) Identify preliminary system-level functions and interfaces (Section 6.2). (2) Examine the overall system complexity and determine how and on what levels the engineered process systems will be monitored, controlled, and

  19. Design and maintenance of subsurface gravel wetlands.

    Science.gov (United States)

    2015-02-01

    This report summarizes the University of New Hampshire Stormwater Center (UNHSC) evaluation of : a review of Subsurface Gravel Wetlands design and specifications used by the New Hampshire : Department of Transportation (NHDOT or Department). : Subsur...

  20. PERISCOPE: PERIapsis Subsurface Cave OPtical Explorer

    Data.gov (United States)

    National Aeronautics and Space Administration — Lunar sub-surface exploration has been a topic of discussion since the Lunar Reconnaissance Orbiter identified openings (cave skylights) on the surface of the moon...

  1. Subsurface Prospecting by Planetary Drones, Phase I

    Data.gov (United States)

    National Aeronautics and Space Administration — The proposed program innovates subsurface prospecting by planetary drones to seek a solution to the difficulty of robotic prospecting, sample acquisition, and sample...

  2. Lidar equation for ocean surface and subsurface.

    Science.gov (United States)

    Josset, Damien; Zhai, Peng-Wang; Hu, Yongxiang; Pelon, Jacques; Lucker, Patricia L

    2010-09-27

    The lidar equation for ocean at optical wavelengths including subsurface signals is revisited using the recent work of the radiative transfer and ocean color community for passive measurements. The previous form of the specular and subsurface echo term are corrected from their heritage, which originated from passive remote sensing of whitecaps, and is improved for more accurate use in future lidar research. A corrected expression for specular and subsurface lidar return is presented. The previous formalism does not correctly address angular dependency of specular lidar return and overestimates the subsurface term by a factor ranging from 89% to 194% for a nadir pointing lidar. Suggestions for future improvements to the lidar equation are also presented.

  3. Electrical resistivity determination of subsurface layers, subsoil ...

    African Journals Online (AJOL)

    Electrical resistivity determination of subsurface layers, subsoil competence and soil corrosivity at and engineering site location in Akungba-Akoko, southwestern Nigeria. A I Idornigie, M O Olorunfemi, A A Omitogun ...

  4. Metalliferous Biosignatures for Deep Subsurface Microbial Activity

    OpenAIRE

    Parnell, John; Brolly, Connor; Spinks, Sam; Bowden, Stephen

    2015-01-01

    The interaction of microbes and metals is widely assumed to have occurred in surface or very shallow subsurface environments. However new evidence suggests that much microbial activity occurs in the deep subsurface. Fluvial, lacustrine and aeolian ?red beds? contain widespread centimetre-scale reduction spheroids in which a pale reduced spheroid in otherwise red rocks contains a metalliferous core. Most of the reduction of Fe (III) in sediments is caused by Fe (III) reducing bacteria. They ha...

  5. Extracting subsurface fingerprints using optical coherence tomography

    CSIR Research Space (South Africa)

    Akhoury, SS

    2015-02-01

    Full Text Available Subsurface Fingerprints using Optical Coherence Tomography Sharat Saurabh Akhoury, Luke Nicholas Darlow Modelling and Digital Science, Council for Scientific and Industrial Research, Pretoria, South Africa Abstract Physiologists have found... that fingerprint patterns exist in the inner layers (viz. papillary junction) of the skin of the fingertip. However, conventional acquisition systems do not have capabilities to extract fingerprints at subsurface layers of the finger for use in identity...

  6. Microbial life in the deep terrestrial subsurface

    Energy Technology Data Exchange (ETDEWEB)

    Fliermans, C.B. [E.I. DuPont de Nemours and Co., Aiken, SC (United States). Savannah River Lab.; Balkwill, D.L. [Florida State Univ., Tallahassee, FL (United States); Beeman, R.E. [Univ. of Oklahoma, Norman, OK (United States)] [and others

    1988-12-31

    The distribution and function of microorganisms is a vital issue in microbial ecology. The US Department of Energy`s Program, ``Microbiology of the Deep Subsurface,`` concentrates on establishing fundamental scientific information about organisms at depth, and the use of these organisms for remediation of contaminants in deep vadose zone and groundwater environments. This investigation effectively extends the Biosphere hundreds of meters into the Geosphere and has implications to a variety of subsurface activities.

  7. Chronic Chagas cardiomyopathy: a review of the main pathogenic mechanisms and the efficacy of aetiological treatment following the BENznidazole Evaluation for Interrupting Trypanosomiasis (BENEFIT trial

    Directory of Open Access Journals (Sweden)

    Anis Rassi Jr

    Full Text Available Chagas cardiomyopathy is the most frequent and most severe manifestation of chronic Chagas disease, and is one of the leading causes of morbidity and death in Latin America. Although the pathogenesis of Chagas cardiomyopathy is incompletely understood, it may involve several mechanisms, including parasite-dependent myocardial damage, immune-mediated myocardial injury (induced by the parasite itself and by self-antigens, and microvascular and neurogenic disturbances. In the past three decades, a consensus has emerged that parasite persistence is crucial to the development and progression of Chagas cardiomyopathy. In this context, antiparasitic treatment in the chronic phase of Chagas disease could prevent complications related to the disease. However, according to the results of the BENEFIT trial, benznidazole seems to have no benefit for arresting disease progression in patients with chronic Chagas cardiomyopathy. In this review, we give an update on the main pathogenic mechanisms of Chagas disease, and re-examine and discuss the results of the BENEFIT trial, together with its limitations and implications.

  8. Chronic Chagas cardiomyopathy: a review of the main pathogenic mechanisms and the efficacy of aetiological treatment following the BENznidazole Evaluation for Interrupting Trypanosomiasis (BENEFIT) trial.

    Science.gov (United States)

    Rassi, Anis; Marin, José Antonio; Rassi, Anis

    2017-03-01

    Chagas cardiomyopathy is the most frequent and most severe manifestation of chronic Chagas disease, and is one of the leading causes of morbidity and death in Latin America. Although the pathogenesis of Chagas cardiomyopathy is incompletely understood, it may involve several mechanisms, including parasite-dependent myocardial damage, immune-mediated myocardial injury (induced by the parasite itself and by self-antigens), and microvascular and neurogenic disturbances. In the past three decades, a consensus has emerged that parasite persistence is crucial to the development and progression of Chagas cardiomyopathy. In this context, antiparasitic treatment in the chronic phase of Chagas disease could prevent complications related to the disease. However, according to the results of the BENEFIT trial, benznidazole seems to have no benefit for arresting disease progression in patients with chronic Chagas cardiomyopathy. In this review, we give an update on the main pathogenic mechanisms of Chagas disease, and re-examine and discuss the results of the BENEFIT trial, together with its limitations and implications.

  9. Attenuation of bulk organic matter, nutrients (N and P), and pathogen indicators during soil passage: Effect of temperature and redox conditions in simulated soil aquifer treatment (SAT)

    KAUST Repository

    Abel, Chol D T

    2012-07-22

    Soil aquifer treatment (SAT) is a costeffective natural wastewater treatment and reuse technology. It is an environmentally friendly technology that does not require chemical usage and is applicable to both developing and developed countries. However, the presence of organic matter, nutrients, and pathogens poses a major health threat to the population exposed to partially treated wastewater or reclaimed water through SAT. Laboratory-based soil column and batch experiments simulating SAT were conducted to examine the influence of temperature variation and oxidation-reduction (redox) conditions on removal of bulk organic matter, nutrients, and indicator microorganisms using primary effluent. While an average dissolved organic carbon (DOC) removal of 17.7 % was achieved in soil columns at 5 °C, removal at higher temperatures increased by 10 % increments with increase in temperature by 5 °C over the range of 15 to 25 °C. Furthermore, soil column and batch experiments conducted under different redox conditions revealed higher DOC removal in aerobic (oxic) experiments compared to anoxic experiments. Aerobic soil columns exhibited DOC removal 15 % higher than that achieved in the anoxic columns, while aerobic batch showed DOC removal 7.8 % higher than the corresponding anoxic batch experiments. Ammonium-nitrogen removal greater than 99 % was observed at 20 and 25 °C, while 89.7 % was removed at 15 °C, but the removal substantially decreased to 8.8 % at 5 °C. While ammonium-nitrogen was attenuated by 99.9 % in aerobic batch reactors carried out at room temperature, anoxic experiments under similar conditions revealed 12.1 % ammonium-nitrogen reduction, corresponding to increase in nitrate-nitrogen and decrease in sulfate concentration. © Springer Science+Business Media B.V. 2012.

  10. Intelligent SUBsurface Quality : Intelligent use of subsurface infrastructure for surface quality

    NARCIS (Netherlands)

    Hooimeijer, F.L.; Kuzniecow Bacchin, T.; Lafleur, F.; van de Ven, F.H.M.; Clemens, F.H.L.R.; Broere, W.; Laumann, S.J.; Klaassen, R.G.; Marinetti, C.

    2016-01-01

    This project focuses on the urban renewal of (delta) metropolises and concentrates on the question how to design resilient, durable (subsurface) infrastructure in urban renewal projects using parameters of the natural system – linking in an efficient way (a) water cycle, (b) soil and subsurface

  11. SUBSURFACE REPOSITORY INTEGRATED CONTROL SYSTEM DESIGN

    Energy Technology Data Exchange (ETDEWEB)

    C.J. Fernado

    1998-09-17

    The purpose of this document is to develop preliminary high-level functional and physical control system architectures for the proposed subsurface repository at Yucca Mountain. This document outlines overall control system concepts that encompass and integrate the many diverse systems being considered for use within the subsurface repository. This document presents integrated design concepts for monitoring and controlling the diverse set of subsurface operations. The subsurface repository design will be composed of a series of diverse systems that will be integrated to accomplish a set of overall functions and objectives. The subsurface repository contains several Instrumentation and Control (I&C) related systems including: waste emplacement systems, ventilation systems, communication systems, radiation monitoring systems, rail transportation systems, ground control monitoring systems, utility monitoring systems (electrical, lighting, water, compressed air, etc.), fire detection and protection systems, retrieval systems, and performance confirmation systems. Each of these systems involve some level of I&C and will typically be integrated over a data communication network. The subsurface I&C systems will also integrate with multiple surface-based site-wide systems such as emergency response, health physics, security and safeguards, communications, utilities and others. The scope and primary objectives of this analysis are to: (1) Identify preliminary system level functions and interface needs (Presented in the functional diagrams in Section 7.2). (2) Examine the overall system complexity and determine how and on what levels these control systems will be controlled and integrated (Presented in Section 7.2). (3) Develop a preliminary subsurface facility-wide design for an overall control system architecture, and depict this design by a series of control system functional block diagrams (Presented in Section 7.2). (4) Develop a series of physical architectures that

  12. SUBSURFACE REPOSITORY INTEGRATED CONTROL SYSTEM DESIGN

    International Nuclear Information System (INIS)

    C.J. Fernado

    1998-01-01

    The purpose of this document is to develop preliminary high-level functional and physical control system architectures for the proposed subsurface repository at Yucca Mountain. This document outlines overall control system concepts that encompass and integrate the many diverse systems being considered for use within the subsurface repository. This document presents integrated design concepts for monitoring and controlling the diverse set of subsurface operations. The subsurface repository design will be composed of a series of diverse systems that will be integrated to accomplish a set of overall functions and objectives. The subsurface repository contains several Instrumentation and Control (I andC) related systems including: waste emplacement systems, ventilation systems, communication systems, radiation monitoring systems, rail transportation systems, ground control monitoring systems, utility monitoring systems (electrical, lighting, water, compressed air, etc.), fire detection and protection systems, retrieval systems, and performance confirmation systems. Each of these systems involve some level of I andC and will typically be integrated over a data communication network. The subsurface I andC systems will also integrate with multiple surface-based site-wide systems such as emergency response, health physics, security and safeguards, communications, utilities and others. The scope and primary objectives of this analysis are to: (1) Identify preliminary system level functions and interface needs (Presented in the functional diagrams in Section 7.2). (2) Examine the overall system complexity and determine how and on what levels these control systems will be controlled and integrated (Presented in Section 7.2). (3) Develop a preliminary subsurface facility-wide design for an overall control system architecture, and depict this design by a series of control system functional block diagrams (Presented in Section 7.2). (4) Develop a series of physical architectures

  13. Subsurface Science Program Bibliography, 1985--1992

    International Nuclear Information System (INIS)

    1992-08-01

    The Subsurface Science Program sponsors long-term basic research on (1) the fundamental physical, chemical, and biological mechanisms that control the reactivity, mobilization, stability, and transport of chemical mixtures in subsoils and ground water; (2) hydrogeology, including the hydraulic, microbiological, and geochemical properties of the vadose and saturated zones that control contaminant mobility and stability, including predictive modeling of coupled hydraulic-geochemical-microbial processes; and (3) the microbiology of deep sediments and ground water. TWs research, focused as it is on the natural subsurface environments that are most significantly affected by the more than 40 years of waste generation and disposal at DOE sites, is making important contributions to cleanup of DOE sites. Past DOE waste-disposal practices have resulted in subsurface contamination at DOE sites by unique combinations of radioactive materials and organic and inorganic chemicals (including heavy metals), which make site cleanup particularly difficult. The long- term (10- to 30-year) goal of the Subsurface Science Program is to provide a foundation of fundamental knowledge that can be used to reduce environmental risks and to provide a sound scientific basis for cost-effective cleanup strategies. The Subsurface Science Program is organized into nine interdisciplinary subprograms, or areas of basic research emphasis. The subprograms currently cover the areas of Co-Contaminant Chemistry, Colloids/Biocolloids, Multiphase Fluid Flow, Biodegradation/ Microbial Physiology, Deep Microbiology, Coupled Processes, Field-Scale (Natural Heterogeneity and Scale), and Environmental Science Research Center

  14. Subsurface barrier verification technologies, informal report

    International Nuclear Information System (INIS)

    Heiser, J.H.

    1994-06-01

    One of the more promising remediation options available to the DOE waste management community is subsurface barriers. Some of the uses of subsurface barriers include surrounding and/or containing buried waste, as secondary confinement of underground storage tanks, to direct or contain subsurface contaminant plumes and to restrict remediation methods, such as vacuum extraction, to a limited area. To be most effective the barriers should be continuous and depending on use, have few or no breaches. A breach may be formed through numerous pathways including: discontinuous grout application, from joints between panels and from cracking due to grout curing or wet-dry cycling. The ability to verify barrier integrity is valuable to the DOE, EPA, and commercial sector and will be required to gain full public acceptance of subsurface barriers as either primary or secondary confinement at waste sites. It is recognized that no suitable method exists for the verification of an emplaced barrier's integrity. The large size and deep placement of subsurface barriers makes detection of leaks challenging. This becomes magnified if the permissible leakage from the site is low. Detection of small cracks (fractions of an inch) at depths of 100 feet or more has not been possible using existing surface geophysical techniques. Compounding the problem of locating flaws in a barrier is the fact that no placement technology can guarantee the completeness or integrity of the emplaced barrier. This report summarizes several commonly used or promising technologies that have been or may be applied to in-situ barrier continuity verification

  15. Subsurface Shielding Source Term Specification Calculation

    International Nuclear Information System (INIS)

    S.Su

    2001-01-01

    The purpose of this calculation is to establish appropriate and defensible waste-package radiation source terms for use in repository subsurface shielding design. This calculation supports the shielding design for the waste emplacement and retrieval system, and subsurface facility system. The objective is to identify the limiting waste package and specify its associated source terms including source strengths and energy spectra. Consistent with the Technical Work Plan for Subsurface Design Section FY 01 Work Activities (CRWMS M and O 2001, p. 15), the scope of work includes the following: (1) Review source terms generated by the Waste Package Department (WPD) for various waste forms and waste package types, and compile them for shielding-specific applications. (2) Determine acceptable waste package specific source terms for use in subsurface shielding design, using a reasonable and defensible methodology that is not unduly conservative. This calculation is associated with the engineering and design activity for the waste emplacement and retrieval system, and subsurface facility system. The technical work plan for this calculation is provided in CRWMS M and O 2001. Development and performance of this calculation conforms to the procedure, AP-3.12Q, Calculations

  16. Subsurface Contaminants Focus Area annual report 1997

    International Nuclear Information System (INIS)

    1997-01-01

    In support of its vision for technological excellence, the Subsurface Contaminants Focus Area (SCFA) has identified three strategic goals. The three goals of the SCFA are: Contain and/or stabilize contamination sources that pose an imminent threat to surface and ground waters; Delineate DNAPL contamination in the subsurface and remediate DNAPL-contaminated soils and ground water; and Remove a full range of metal and radionuclide contamination in soils and ground water. To meet the challenges of remediating subsurface contaminants in soils and ground water, SCFA funded more than 40 technologies in fiscal year 1997. These technologies are grouped according to the following product lines: Dense Nonaqueous-Phase Liquids; Metals and Radionuclides; Source Term Containment; and Source Term Remediation. This report briefly describes the SCFA 1997 technologies and showcases a few key technologies in each product line

  17. Twin screw subsurface and surface multiphase pumps

    Energy Technology Data Exchange (ETDEWEB)

    Dass, P. [CAN-K GROUP OF COMPANIES, Edmonton, Alberta (Canada)

    2011-07-01

    A new subsurface twin screw multiphase pump has been developed to replace ESP and other artificial lift technologies. This technology has been under development for a few years, has been field tested and is now going for commercial applications. The subsurface twin screw technology consists of a pair of screws that do not touch and can be run with a top drive or submersible motor; and it carries a lot of benefits. This technology is easy to install and its low slippage makes it highly efficient with heavy oil. In addition twin screw multiphase pumps are capable of handling high viscosity fluids and thus their utilization can save water when used in thermal applications. It also induces savings of chemicals because asphaltenes do not break down easily as well as a reduction in SOR. The subsurface twin screw multiphase pump presented herein is an advanced technology which could be used in thermal applications.

  18. MSTS - Multiphase Subsurface Transport Simulator theory manual

    International Nuclear Information System (INIS)

    White, M.D.; Nichols, W.E.

    1993-05-01

    The US Department of Energy, through the Yucca Mountain Site Characterization Project Office, has designated the Yucca Mountain site in Nevada for detailed study as the candidate US geologic repository for spent nuclear fuel and high-level radioactive waste. Site characterization will determine the suitability of the Yucca Mountain site for the potential waste repository. If the site is determined suitable, subsequent studies and characterization will be conducted to obtain authorization from the Nuclear Regulatory Commission to construct the potential waste repository. A principal component of the characterization and licensing processes involves numerically predicting the thermal and hydrologic response of the subsurface environment of the Yucca Mountain site to the potential repository over a 10,000-year period. The thermal and hydrologic response of the subsurface environment to the repository is anticipated to include complex processes of countercurrent vapor and liquid migration, multiple-phase heat transfer, multiple-phase transport, and geochemical reactions. Numerical simulators based on mathematical descriptions of these subsurface phenomena are required to make numerical predictions of the thermal and hydrologic response of the Yucca Mountain subsurface environment The engineering simulator called the Multiphase Subsurface Transport Simulator (MSTS) was developed at the request of the Yucca Mountain Site Characterization Project Office to produce numerical predictions of subsurface flow and transport phenomena at the potential Yucca Mountain site. This document delineates the design architecture and describes the specific computational algorithms that compose MSTS. Details for using MSTS and sample problems are given in the open-quotes User's Guide and Referenceclose quotes companion document

  19. Improving the biodegradative capacity of subsurface bacteria

    Energy Technology Data Exchange (ETDEWEB)

    Romine, M.F.; Brockman, F.J.

    1993-04-01

    The continual release of large volumes of synthetic materials into the environment by agricultural and industrial sources over the last few decades has resulted in pollution of the subsurface environment. Cleanup has been difficult because of the relative inaccessibility of the contaminants caused by their wide dispersal in the deep subsurface, often at low concentrations and in large volumes. As a possible solution for these problems, interest in the introduction of biodegradative bacteria for in situ remediation of these sites has increased greatly in recent years (Timmis et al. 1988). Selection of biodegradative microbes to apply in such cleanup is limited to those strains that can survive among the native bacterial and predator community members at the particular pH, temperature, and moisture status of the site (Alexander, 1984). The use of microorganisms isolated from subsurface environments would be advantageous because the organisms are already adapted to the subsurface conditions. The options are further narrowed to strains that are able to degrade the contaminant rapidly, even in the presence of highly recalcitrant anthropogenic waste mixtures, and in conditions that do not require addition of further toxic compounds for the expression of the biodegradative capacity (Sayler et al. 1990). These obstacles can be overcome by placing the genes of well-characterized biodegradative enzymes under the control of promoters that can be regulated by inexpensive and nontoxic external factors and then moving the new genetic constructs into diverse groups of subsurface microbes. ne objective of this research is to test this hypothesis by comparing expression of two different toluene biodegradative enzymatic pathways from two different regulatable promoters in a variety of subsurface isolates.

  20. Improving the biodegradative capacity of subsurface bacteria

    International Nuclear Information System (INIS)

    Romine, M.F.; Brockman, F.J.

    1993-04-01

    The continual release of large volumes of synthetic materials into the environment by agricultural and industrial sources over the last few decades has resulted in pollution of the subsurface environment. Cleanup has been difficult because of the relative inaccessibility of the contaminants caused by their wide dispersal in the deep subsurface, often at low concentrations and in large volumes. As a possible solution for these problems, interest in the introduction of biodegradative bacteria for in situ remediation of these sites has increased greatly in recent years (Timmis et al. 1988). Selection of biodegradative microbes to apply in such cleanup is limited to those strains that can survive among the native bacterial and predator community members at the particular pH, temperature, and moisture status of the site (Alexander, 1984). The use of microorganisms isolated from subsurface environments would be advantageous because the organisms are already adapted to the subsurface conditions. The options are further narrowed to strains that are able to degrade the contaminant rapidly, even in the presence of highly recalcitrant anthropogenic waste mixtures, and in conditions that do not require addition of further toxic compounds for the expression of the biodegradative capacity (Sayler et al. 1990). These obstacles can be overcome by placing the genes of well-characterized biodegradative enzymes under the control of promoters that can be regulated by inexpensive and nontoxic external factors and then moving the new genetic constructs into diverse groups of subsurface microbes. ne objective of this research is to test this hypothesis by comparing expression of two different toluene biodegradative enzymatic pathways from two different regulatable promoters in a variety of subsurface isolates

  1. Heating systems for heating subsurface formations

    Science.gov (United States)

    Nguyen, Scott Vinh [Houston, TX; Vinegar, Harold J [Bellaire, TX

    2011-04-26

    Methods and systems for heating a subsurface formation are described herein. A heating system for a subsurface formation includes a sealed conduit positioned in an opening in the formation and a heat source. The sealed conduit includes a heat transfer fluid. The heat source provides heat to a portion of the sealed conduit to change phase of the heat transfer fluid from a liquid to a vapor. The vapor in the sealed conduit rises in the sealed conduit, condenses to transfer heat to the formation and returns to the conduit portion as a liquid.

  2. Opportunistic Premise Plumbing Pathogens: Increasingly Important Pathogens in Drinking Water

    Directory of Open Access Journals (Sweden)

    Joseph O. Falkinham

    2015-06-01

    Full Text Available Opportunistic premise plumbing pathogens are responsible for a significant number of infections whose origin has been traced to drinking water. These opportunistic pathogens represent an emerging water borne disease problem with a major economic cost of at least $1 billion annually. The common features of this group of waterborne pathogens include: disinfectant-resistance, pipe surface adherence and biofilm formation, growth in amoebae, growth on low organic concentrations, and growth at low oxygen levels. Their emergence is due to the fact that conditions resulting from drinking water treatment select for them. As such, there is a need for novel approaches to reduce exposure to these pathogens. In addition to much-needed research, controls to reduce numbers and human exposure can be instituted independently by utilities and homeowners and hospital- and building-operators.

  3. Opportunistic Premise Plumbing Pathogens: Increasingly Important Pathogens in Drinking Water.

    Science.gov (United States)

    Falkinham, Joseph O; Pruden, Amy; Edwards, Marc

    2015-06-09

    Opportunistic premise plumbing pathogens are responsible for a significant number of infections whose origin has been traced to drinking water. These opportunistic pathogens represent an emerging water borne disease problem with a major economic cost of at least $1 billion annually. The common features of this group of waterborne pathogens include: disinfectant-resistance, pipe surface adherence and biofilm formation, growth in amoebae, growth on low organic concentrations, and growth at low oxygen levels. Their emergence is due to the fact that conditions resulting from drinking water treatment select for them. As such, there is a need for novel approaches to reduce exposure to these pathogens. In addition to much-needed research, controls to reduce numbers and human exposure can be instituted independently by utilities and homeowners and hospital- and building-operators.

  4. Subsurface clade of Geobacteraceae that predominates in a diversity of Fe(III)-reducing subsurface environments

    Science.gov (United States)

    Holmes, Dawn E.; O'Neil, Regina A.; Vrionis, Helen A.; N'Guessan, Lucie A.; Ortiz-Bernad, Irene; Larrahondo, Maria J.; Adams, Lorrie A.; Ward, Joy A.; Nicoll , Julie S.; Nevin, Kelly P.; Chavan, Milind A.; Johnson, Jessica P.; Long, Philip E.; Lovely, Derek R.

    2007-01-01

    There are distinct differences in the physiology of Geobacter species available in pure culture. Therefore, to understand the ecology of Geobacter species in subsurface environments, it is important to know which species predominate. Clone libraries were assembled with 16S rRNA genes and transcripts amplified from three subsurface environments in which Geobacter species are known to be important members of the microbial community: (1) a uranium-contaminated aquifer located in Rifle, CO, USA undergoing in situ bioremediation; (2) an acetate-impacted aquifer that serves as an analog for the long-term acetate amendments proposed for in situ uranium bioremediation and (3) a petroleum-contaminated aquifer in which Geobacter species play a role in the oxidation of aromatic hydrocarbons coupled with the reduction of Fe(III). The majority of Geobacteraceae 16S rRNA sequences found in these environments clustered in a phylogenetically coherent subsurface clade, which also contains a number of Geobacter species isolated from subsurface environments. Concatamers constructed with 43 Geobacter genes amplified from these sites also clustered within this subsurface clade. 16S rRNA transcript and gene sequences in the sediments and groundwater at the Rifle site were highly similar, suggesting that sampling groundwater via monitoring wells can recover the most active Geobacter species. These results suggest that further study of Geobacter species in the subsurface clade is necessary to accurately model the behavior of Geobacter species during subsurface bioremediation of metal and organic contaminants.

  5. Emerging Pathogens Initiative (EPI)

    Data.gov (United States)

    Department of Veterans Affairs — The Emerging Pathogens Initiative (EPI) database contains emerging pathogens information from the local Veterans Affairs Medical Centers (VAMCs). The EPI software...

  6. Solar Filaments as Tracers of Subsurface Processes

    Indian Academy of Sciences (India)

    tribpo

    Filaments are clouds of relatively cool and dense gas in the solar atmosphere. ... First-tier filaments may be related to a peculiar feature of the solar dynamo. .... Still, an appeal to subsurface processes should be resisted, but surface motion models have been able to reproduce neither the pattern of filament field orientations ...

  7. Characterization of the Geology of Subsurface Shallow ...

    African Journals Online (AJOL)

    In the present study, the 2D electrical resistivity imaging of subsurface shallow conglomerate has been generated using through Computerized Resistivity Meter (CRM -500) and the Wenner electrode configuration has been used for 2D electrical resistivity imaging studies. The measured apparent resistivity values have ...

  8. Electrical resistivity determination of subsurface layers, subsoil ...

    African Journals Online (AJOL)

    Electrical resistivity determination of subsurface layers, subsoil competence and soil corrosivity at and engineering site location in Akungba-Akoko, ... The study concluded that the characteristics of the earth materials in the site would be favourable to normal engineering structures/materials that may be located on it.

  9. Modelling Nitrogen Transformation in Horizontal Subsurface Flow ...

    African Journals Online (AJOL)

    A mathematical model was developed to permit dynamic simulation of nitrogen interaction in a pilot horizontal subsurface flow constructed wetland receiving effluents from primary facultative pond. The system was planted with Phragmites mauritianus, which was provided with root zone depth of 75 cm. The root zone was ...

  10. Horizontal wells in subsurface remediation

    International Nuclear Information System (INIS)

    Losonsky, G.; Beljin, M.S.

    1992-01-01

    This paper reports on horizontal wells which offer an effective alternative to vertical wells in various environmental remediation technologies. Hydrogeological advantages of horizontal wells over vertical wells include a larger zone of influence, greater screen length, higher specific capacity and lower groundwater screen entrance velocity. Because of these advantages, horizontal wells can reduce treatment time and costs of groundwater recovery (pump-and-treat), in situ groundwater aeration (sparging) and soil gas extraction (vacuum extraction). Horizontal wells are also more effective than vertical wells in landfill leachate collection (under-drains), bioremediation, and horizontal grout injection

  11. Liberal diagnosis and treatment of intrauterine infection reduces early-onset neonatal group B streptococcal infection but not sepsis by other pathogens

    NARCIS (Netherlands)

    Wolf, H.; Schaap, A. H.; Smit, B. J.; Spanjaard, L.; Adriaanse, A. H.

    2000-01-01

    OBJECTIVE: Comparison of the incidence and case fatality of early-onset group B streptococcus sepsis and sepsis caused by other pathogens in neonates after change of management of intrauterine infection. METHODS: All infants delivered from 1988 through 1997 at a gestational age > or = 24 weeks with

  12. Antibiotic resistance genes persist longer in soils with subsurface banded poultry litter

    Science.gov (United States)

    The objective of this study was to determine the concentration of AR genes for sulfonamide (sulI), tetracycline (tetW), streptomycin (strpB) and for the class one integrase (intI1) gene in soils with subsurface banded PL. Field scale plots were established with triplicate treatments of either no fer...

  13. Using geothermal energy to heat a portion of a formation for an in situ heat treatment process

    Science.gov (United States)

    Pieterson, Roelof; Boyles, Joseph Michael; Diebold, Peter Ulrich

    2010-06-08

    Methods of using geothermal energy to treat subsurface formations are described herein. Methods for using geothermal energy to treat a subsurface treatment area containing or proximate to hydrocarbons may include producing geothermally heated fluid from at least one subsurface region. Heat from at least a portion of the geothermally heated fluid may be transferred to the subsurface treatment area to heat the subsurface treatment area. At least some hydrocarbon fluids may be produced from the formation.

  14. Future research needs involving pathogens in groundwater

    Science.gov (United States)

    Bradford, Scott A.; Harvey, Ronald W.

    2017-06-01

    Contamination of groundwater by enteric pathogens has commonly been associated with disease outbreaks. Proper management and treatment of pathogen sources are important prerequisites for preventing groundwater contamination. However, non-point sources of pathogen contamination are frequently difficult to identify, and existing approaches for pathogen detection are costly and only provide semi-quantitative information. Microbial indicators that are readily quantified often do not correlate with the presence of pathogens. Pathogens of emerging concern and increasing detections of antibiotic resistance among bacterial pathogens in groundwater are topics of growing concern. Adequate removal of pathogens during soil passage is therefore critical for safe groundwater extraction. Processes that enhance pathogen transport (e.g., high velocity zones and preferential flow) and diminish pathogen removal (e.g., reversible retention and enhanced survival) are of special concern because they increase the risk of groundwater contamination, but are still incompletely understood. Improved theory and modeling tools are needed to analyze experimental data, test hypotheses, understand coupled processes and controlling mechanisms, predict spatial and/or temporal variability in model parameters and uncertainty in pathogen concentrations, assess risk, and develop mitigation and best management approaches to protect groundwater.

  15. Geophysical data fusion for subsurface imaging

    International Nuclear Information System (INIS)

    Blohm, M.; Hatch, W.E.; Hoekstra, P.; Porter, D.W.

    1994-01-01

    Effective site characterization requires that many relevant geologic, hydrogeologic and biological properties of the subsurface be evaluated. A parameter that often directly influences chemical processes, ground water flow, contaminant transport, and biological activities is the lateral and vertical distribution of clays. The objective of the research an development under this contract is to improve non-invasive methods for detecting clay lenses. The percentage of clays in soils influences most physical properties that have an impact on environmental restoration and waste management. For example, the percentage of clays determine hydraulic permeability and the rate of contaminant migration, absorption of radioactive elements, and interaction with organic compounds. Therefore, improvements in non-invasive mapping of clays in the subsurface will result in better: characterization of contaminated sites, prediction of pathways of contaminant migration, assessment of risk of contaminants to public health if contaminants reach water supplies, design of remedial action and evaluation of alternative action

  16. Directional Dipole Model for Subsurface Scattering

    DEFF Research Database (Denmark)

    Frisvad, Jeppe Revall; Hachisuka, Toshiya; Kjeldsen, Thomas Kim

    2014-01-01

    Rendering translucent materials using Monte Carlo ray tracing is computationally expensive due to a large number of subsurface scattering events. Faster approaches are based on analytical models derived from diffusion theory. While such analytical models are efficient, they miss out on some...... translucency effects in the rendered result. We present an improved analytical model for subsurface scattering that captures translucency effects present in the reference solutions but remaining absent with existing models. The key difference is that our model is based on ray source diffusion, rather than...... similar to that of the standard dipole model, but we now have positive and negative ray sources with a mirrored pair of directions. Our model is as computationally efficient as existing models while it includes single scattering without relying on a separate Monte Carlo simulation, and the rendered images...

  17. UAN subsurface telemetry unit. Laboratory tests

    OpenAIRE

    Zabel, F.; Martins, C.

    2009-01-01

    SiPLAB Report 07/09, FCT, University of Algarve,2009. This document describes the laboratory tests performed on the Subsurface Telemetry Unit (STU) which was developped for the Underwater Acoustic Network EU-FP7 Project. The tests are separated into mechanical, energy, cable, electronics, acoustic acquisition, STU computer and the base station. This work was supported by project UAN (Underwater Acoustic Network) from the European Community's Seventh Framework Programme (FP7/2007-2013) u...

  18. Metalliferous Biosignatures for Deep Subsurface Microbial Activity

    Science.gov (United States)

    Parnell, John; Brolly, Connor; Spinks, Sam; Bowden, Stephen

    2016-03-01

    The interaction of microbes and metals is widely assumed to have occurred in surface or very shallow subsurface environments. However new evidence suggests that much microbial activity occurs in the deep subsurface. Fluvial, lacustrine and aeolian `red beds' contain widespread centimetre-scale reduction spheroids in which a pale reduced spheroid in otherwise red rocks contains a metalliferous core. Most of the reduction of Fe (III) in sediments is caused by Fe (III) reducing bacteria. They have the potential to reduce a range of metals and metalloids, including V, Cu, Mo, U and Se, by substituting them for Fe (III) as electron acceptors, which are all elements common in reduction spheroids. The spheroidal morphology indicates that they were formed at depth, after compaction, which is consistent with a microbial formation. Given that the consequences of Fe (III) reduction have a visual expression, they are potential biosignatures during exploration of the terrestrial and extraterrestrial geological record. There is debate about the energy available from Fe (III) reduction on Mars, but the abundance of iron in Martian soils makes it one of the most valuable prospects for life there. Entrapment of the microbes themselves as fossils is possible, but a more realistic target during the exploration of Mars would be the colour contrasts reflecting selective reduction or oxidation. This can be achieved by analysing quartz grains across a reduction spheroid using Raman spectroscopy, which demonstrates its suitability for life detection in subsurface environments. Microbial action is the most suitable explanation for the formation of reduction spheroids and may act as metalliferous biosignatures for deep subsurface microbial activity.

  19. Metalliferous Biosignatures for Deep Subsurface Microbial Activity.

    Science.gov (United States)

    Parnell, John; Brolly, Connor; Spinks, Sam; Bowden, Stephen

    2016-03-01

    The interaction of microbes and metals is widely assumed to have occurred in surface or very shallow subsurface environments. However new evidence suggests that much microbial activity occurs in the deep subsurface. Fluvial, lacustrine and aeolian 'red beds' contain widespread centimetre-scale reduction spheroids in which a pale reduced spheroid in otherwise red rocks contains a metalliferous core. Most of the reduction of Fe (III) in sediments is caused by Fe (III) reducing bacteria. They have the potential to reduce a range of metals and metalloids, including V, Cu, Mo, U and Se, by substituting them for Fe (III) as electron acceptors, which are all elements common in reduction spheroids. The spheroidal morphology indicates that they were formed at depth, after compaction, which is consistent with a microbial formation. Given that the consequences of Fe (III) reduction have a visual expression, they are potential biosignatures during exploration of the terrestrial and extraterrestrial geological record. There is debate about the energy available from Fe (III) reduction on Mars, but the abundance of iron in Martian soils makes it one of the most valuable prospects for life there. Entrapment of the microbes themselves as fossils is possible, but a more realistic target during the exploration of Mars would be the colour contrasts reflecting selective reduction or oxidation. This can be achieved by analysing quartz grains across a reduction spheroid using Raman spectroscopy, which demonstrates its suitability for life detection in subsurface environments. Microbial action is the most suitable explanation for the formation of reduction spheroids and may act as metalliferous biosignatures for deep subsurface microbial activity.

  20. CLASSIFICATION OF THE MGR SUBSURFACE EXCAVATION SYSTEM

    International Nuclear Information System (INIS)

    R. Garrett

    1999-01-01

    The purpose of this analysis is to document the Quality Assurance (QA) classification of the Monitored Geologic Repository (MGR) subsurface excavation system structures, systems and components (SSCs) performed by the MGR Safety Assurance Department. This analysis also provides the basis for revision of YMP/90-55Q, Q-List (YMP 1998). The Q-List identifies those MGR SSCs subject to the requirements of DOE/RW-0333P, ''Quality Assurance Requirements and Description'' (QARD) (DOE 1998)

  1. Mars subsurface investigation by MARSIS and SHARAD

    Science.gov (United States)

    Picardi, Giovanni; Loukas, Alessandro; Masdea, Arturo; Mastrogiuseppe, Marco; Restano, Marco; Seu, Roberto

    2010-05-01

    This paper is addressed to MARSIS (Mars Advanced Radar for Subsurface and Ionosphere Sounding in Mars Express ESA mission) data inversion. The data inversion gives an estimation of the materials composing the different detected interfaces, including the impurity (inclusion) of the first layer, if any, and its percentage, by the evaluation of the values of the permittivity that would generate the observed radio echoes. The methodology utilized for the data inversion is applied in different areas of the Mars South Pole and the results are reported for each area. The scattering behavior of the surface and subsurface (flat or rough), according with the geometrical structure, is estimated by the shape of the radar echoes and is utilized for the correction of their power; in such a way the contributions due to the surface and subsurface shape are estimated and the corrected echoes contain only the surface and subsurface material features. In this paper, in order to define the main topics of the data inversion, are only considered areas where flat surfaces are present and clutter echoes are negligible; the clutter cancellation can be applied according with the well known techniques. The scattering (volume scattering) due to the inclusion in the host material has been considered. Several frames, from SHARAD (SHAllow RADar in Mars Reconnaissance Orbiter US mission), in the same Mars area, have been analyzed and they confirmed the layer attenuation obtained by MARSIS data. Within the MARSIS papers this one presents a quantitative and scientific parametric data inversion, based on a physical approach and gives numerical results on the dielectric constant of the detected interface.

  2. Cultivation Of Deep Subsurface Microbial Communities

    Science.gov (United States)

    Obrzut, Natalia; Casar, Caitlin; Osburn, Magdalena R.

    2018-01-01

    The potential habitability of surface environments on other planets in our solar system is limited by exposure to extreme radiation and desiccation. In contrast, subsurface environments may offer protection from these stressors and are potential reservoirs for liquid water and energy that support microbial life (Michalski et al., 2013) and are thus of interest to the astrobiology community. The samples used in this project were extracted from the Deep Mine Microbial Observatory (DeMMO) in the former Homestake Mine at depths of 800 to 2000 feet underground (Osburn et al., 2014). Phylogenetic data from these sites indicates the lack of cultured representatives within the community. We used geochemical data to guide media design to cultivate and isolate organisms from the DeMMO communities. Media used for cultivation varied from heterotrophic with oxygen, nitrate or sulfate to autotrophic media with ammonia or ferrous iron. Environmental fluid was used as inoculum in batch cultivation and strains were isolated via serial transfers or dilution to extinction. These methods resulted in isolating aerobic heterotrophs, nitrate reducers, sulfate reducers, ammonia oxidizers, and ferric iron reducers. DNA sequencing of these strains is underway to confirm which species they belong to. This project is part of the NASA Astrobiology Institute Life Underground initiative to detect and characterize subsurface microbial life; by characterizing the intraterrestrials, the life living deep within Earth’s crust, we aim to understand the controls on how and where life survives in subsurface settings. Cultivation of terrestrial deep subsurface microbes will provide insight into the survival mechanisms of intraterrestrials guiding the search for these life forms on other planets.

  3. CLASSIFICATION OF THE MGR SUBSURFACE VENTILATION SYSTEM

    International Nuclear Information System (INIS)

    R.J. Garrett

    1999-01-01

    The purpose of this analysis is to document the Quality Assurance (QA) classification of the Monitored Geologic Repository (MGR) subsurface ventilation system structures, systems and components (SSCs) performed by the MGR Safety Assurance Department. This analysis also provides the basis for revision of YMP/90-55Q, Q-List (YMP 1998). The Q-List identifies those MGR SSCs subject to the requirements of DOE/RW-0333P7 ''Quality Assurance Requirements and Description'' (QARD) (DOE 1998)

  4. Yucca Mountain Project Subsurface Facilities Design

    International Nuclear Information System (INIS)

    Linden, A.; Saunders, R.S.; Boutin, R.J.; Harrington, P.G.; Lachman, K.D.; Trautner, L.J.

    2002-01-01

    Four units of the Topopah Springs formation (volcanic tuff) are considered for the proposed repository: the upper lithophysal, the middle non-lithophysal, the lower lithophysal, and the lower non-lithophysal. Yucca Mountain was recently designated the site for a proposed repository to dispose of spent nuclear fuel and high-level radioactive waste. Work is proceeding to advance the design of subsurface facilities to accommodate emplacing waste packages in the proposed repository. This paper summarized recent progress in the design of subsurface layout of the proposed repository. The original Site Recommendation (SR) concept for the subsurface design located the repository largely within the lower lithophysal zone (approximately 73%) of the Topopah The Site Recommendation characterized area suitable for emplacement consisted of the primary upper block, the lower block and the southern upper block extension. The primary upper block accommodated the mandated 70,000 metric tons of heavy metal (MTHM) at a 1.45 kW/m hear heat load. Based on further study of the Site Recommendation concept, the proposed repository siting area footprint was modified to make maximum use of available site characterization data, and thus, reduce uncertainties associated with performance assessment. As a result of this study, a modified repository footprint has been proposed and is presently being review for acceptance by the DOE. A panel design concept was developed to reduce overall costs and reduce the overall emplacement schedule. This concept provides flexibility to adjust the proposed repository subsurface layout with time, as it makes it unnecessary to ''commit'' to development of a large single panel at the earliest stages of construction. A description of the underground layout configuration and influencing factors that affect the layout configuration are discussed in the report

  5. Activation of Peroxymonosulfate by Subsurface Minerals

    Science.gov (United States)

    Yu, Miao; Teel, Amy L.; Watts, Richard J.

    2016-08-01

    In situ chemical oxidation (ISCO) has become a widely used technology for the remediation of soil and groundwater. Although peroxymonosulfate is not a common oxidant source for ISCO, its chemical structure is similar to the ISCO reagents hydrogen peroxide and persulfate, suggesting that peroxymonosulfate may have the beneficial properties of each of these oxidants. Peroxymonosulfate activation in the presence of subsurface minerals was examined as a basis for ISCO, and possible reactive species (hydroxyl radical, sulfate radical, and reductants + nucleophiles) generated in the mineral-activated peroxymonosulfate systems were investigated. Rates of peroxymonosulfate decomposition and generation rates of reactive species were studied in the presence of three iron oxides, one manganese oxide, and three soil fractions. The iron oxide hematite-activated peroxymonosulfate system most effectively degraded the hydroxyl radical probe nitrobenzene. Reductants + nucleophiles were not generated in mineral-activated peroxymonosulfate systems. Use of the probe compound anisole in conjunction with scavengers demonstrated that both sulfate radical and hydroxyl radical are generated in mineral-activated peroxymonosulfate systems. In order to confirm the activation of peroxymonosulfate by subsurface minerals, one natural soil and associated two soil fractions were evaluated as peroxymonosulfate catalysts. The natural soil did not effectively promote the generation of oxidants; however, the soil organic matter was found to promote the generation of reductants + nucleophiles. The results of this research show that peroxymonosulfate has potential as an oxidant source for ISCO applications, and would be most effective in treating halogenated contaminants when soil organic matter is present in the subsurface.

  6. Molecular analysis of deep subsurface bacteria

    International Nuclear Information System (INIS)

    Jimenez Baez, L.E.

    1989-09-01

    Deep sediments samples from site C10a, in Appleton, and sites, P24, P28, and P29, at the Savannah River Site (SRS), near Aiken, South Carolina were studied to determine their microbial community composition, DNA homology and mol %G+C. Different geological formations with great variability in hydrogeological parameters were found across the depth profile. Phenotypic identification of deep subsurface bacteria underestimated the bacterial diversity at the three SRS sites, since bacteria with the same phenotype have different DNA composition and less than 70% DNA homology. Total DNA hybridization and mol %G+C analysis of deep sediment bacterial isolates suggested that each formation is comprised of different microbial communities. Depositional environment was more important than site and geological formation on the DNA relatedness between deep subsurface bacteria, since more 70% of bacteria with 20% or more of DNA homology came from the same depositional environments. Based on phenotypic and genotypic tests Pseudomonas spp. and Acinetobacter spp.-like bacteria were identified in 85 million years old sediments. This suggests that these microbial communities might have been adapted during a long period of time to the environmental conditions of the deep subsurface

  7. Subsurface urban heat islands in German cities.

    Science.gov (United States)

    Menberg, Kathrin; Bayer, Peter; Zosseder, Kai; Rumohr, Sven; Blum, Philipp

    2013-01-01

    Little is known about the intensity and extension of subsurface urban heat islands (UHI), and the individual role of the driving factors has not been revealed either. In this study, we compare groundwater temperatures in shallow aquifers beneath six German cities of different size (Berlin, Munich, Cologne, Frankfurt, Karlsruhe and Darmstadt). It is revealed that hotspots of up to +20K often exist, which stem from very local heat sources, such as insufficiently insulated power plants, landfills or open geothermal systems. When visualizing the regional conditions in isotherm maps, mostly a concentric picture is found with the highest temperatures in the city centers. This reflects the long-term accumulation of thermal energy over several centuries and the interplay of various factors, particularly in heat loss from basements, elevated ground surface temperatures (GST) and subsurface infrastructure. As a primary indicator to quantify and compare large-scale UHI intensity the 10-90%-quantile range UHII(10-90) of the temperature distribution is introduced. The latter reveals, in comparison to annual atmospheric UHI intensities, an even more pronounced heating of the shallow subsurface. Copyright © 2012 Elsevier B.V. All rights reserved.

  8. Hydrogen utilization potential in subsurface sediments

    Directory of Open Access Journals (Sweden)

    Rishi Ram Adhikari

    2016-01-01

    Full Text Available Subsurface microbial communities undertake many terminal electron-accepting processes, often simultaneously. Using a tritium-based assay, we measured the potential hydrogen oxidation catalyzed by hydrogenase enzymes in several subsurface sedimentary environments (Lake Van, Barents Sea, Equatorial Pacific and Gulf of Mexico with different predominant electron-acceptors. Hydrogenases constitute a diverse family of enzymes expressed by microorganisms that utilize molecular hydrogen as a metabolic substrate, product or intermediate. The assay reveals the potential for utilizing molecular hydrogen and allows qualitative detection of microbial activity irrespective of the predominant electron-accepting process. Because the method only requires samples frozen immediately after recovery, the assay can be used for identifying microbial activity in subsurface ecosystems without the need to preserve live material.We measured potential hydrogen oxidation rates in all samples from multiple depths at several sites that collectively span a wide range of environmental conditions and biogeochemical zones. Potential activity normalized to total cell abundance ranges over five orders of magnitude and varies, dependent upon the predominant terminal electron acceptor. Lowest per-cell potential rates characterize the zone of nitrate reduction and highest per-cell potential rates occur in the methanogenic zone. Possible reasons for this relationship to predominant electron acceptor include (i increasing importance of fermentation in successively deeper biogeochemical zones and (ii adaptation of H2ases to successively higher concentrations of H2 in successively deeper zones.

  9. Bacterial reproductive pathogens of cats and dogs.

    Science.gov (United States)

    Graham, Elizabeth M; Taylor, David J

    2012-05-01

    With the notable exception of Brucella canis, exogenous bacterial pathogens are uncommon causes of reproductive disease in cats and dogs. Most bacterial reproductive infections are endogenous, and predisposing factors for infection are important. This article reviews the etiology, pathogenesis, clinical presentation, diagnosis, treatment, and public health significance of bacterial reproductive pathogens in cats and dogs.

  10. Deep percolation in greenhouse-cultivated celery using the technique of subsurface film strips placement

    Directory of Open Access Journals (Sweden)

    Zhida Du

    2014-05-01

    Full Text Available To reduce the deep percolation during greenhouse vegetable cultivation, the technique of subsurface film strips placement was tested. Four treatments with two kinds of cross-sections (flat and U-shaped and two different spacings (10 cm and 40 cm of subsurface film strips were arranged in a greenhouse before planting celery. At the same time, a non-film treatment was arranged for comparison. Soil water content was measured and irrigation time was adjusted according to the soil water content. Evapotranspiration of celery during growth was calculated by the method of energy balance and the deep percolation was calculated by the equation of water balance. Deep percolation was reduced in all experimental treatments. Greater reduction in deep percolation was observed when using U-shaped cross-section strips compared with that using the flat cross-section strips. In addition, greater reduction in deep percolation was observed when the spacing between the film strips was smaller. The results of this test showed that the technique of subsurface film strips placement can reduce deep percolation and conserve irrigation water for greenhouse vegetables cultivation. However, the optimal layout variables for the use of the technique of subsurface film strips placement need further experimental and numerical analysis.

  11. Promotion and inhibition of mutation in pathogens

    Directory of Open Access Journals (Sweden)

    Maurice Samuel Devaraj

    2014-03-01

    Findings from this research may be used to prevent development of drug resistance, whether epigenetic or arising due to deoxyribonucleic acid (DNA modification, in several pathogens, especially Mycobacterium tuberculosis through the co-administration of adenosine along with antibiotic treatment.

  12. Using Muons to Image the Subsurface.

    Energy Technology Data Exchange (ETDEWEB)

    Bonal, Nedra [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Cashion, Avery Ted [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Cieslewski, Grzegorz [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Dorsey, Daniel J. [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Foris, Adam [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Miller, Timothy J. [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Roberts, Barry L [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Su, Jiann-Cherng [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Dreesen, Wendi [NSTec, Livermore, CA (United States); Green, J. Andrew [NSTec, Livermore, CA (United States); Schwellenbach, David [NSTec, Livermore, CA (United States)

    2016-11-01

    Muons are subatomic particles that can penetrate the earth 's crust several kilometers and may be useful for subsurface characterization . The absorption rate of muons depends on the density of the materials through which they pass. Muons are more sensitive to density variation than other phenomena, including gravity, making them beneficial for subsurface investigation . Measurements of muon flux rate at differing directions provide density variations of the materials between the muon source (cosmic rays and neutrino interactions) and the detector, much like a CAT scan. Currently, muon tomography can resolve features to the sub-meter scale. This work consists of three parts to address the use of muons for subsurface characterization : 1) assess the use of muon scattering for estimating density differences of common rock types, 2 ) using muon flux to detect a void in rock, 3) measure muon direction by designing a new detector. Results from this project lay the groundwork for future directions in this field. Low-density objects can be detected by muons even when enclosed in high-density material like lead, and even small changes in density (e.g. changes due to fracturing of material) can be detected. Rock density has a linear relationship with muon scattering density per rock volume when this ratio is greater than 0.10 . Limitations on using muon scattering to assess density changes among common rock types have been identified. However, other analysis methods may show improved results for these relatively low density materials. Simulations show that muons can be used to image void space (e.g. tunnels) within rock but experimental results have been ambiguous. Improvements are suggested to improve imaging voids such as tunnels through rocks. Finally, a muon detector has been designed and tested to measure muon direction, which will improve signal-to-noise ratio and help address fundamental questions about the source of upgoing muons .

  13. Using Muons to Image the Subsurface

    International Nuclear Information System (INIS)

    Bonal, Nedra; Cashion, Avery Ted; Cieslewski, Grzegorz; Dorsey, Daniel J.; Foris, Adam; Miller, Timothy J.; Roberts, Barry L; Su, Jiann-Cherng; Dreesen, Wendi; Green, J. Andrew; Schwellenbach, David

    2016-01-01

    Muons are subatomic particles that can penetrate the earth 's crust several kilometers and may be useful for subsurface characterization . The absorption rate of muons depends on the density of the materials through which they pass. Muons are more sensitive to density variation than other phenomena, including gravity, making them beneficial for subsurface investigation . Measurements of muon flux rate at differing directions provide density variations of the materials between the muon source (cosmic rays and neutrino interactions) and the detector, much like a CAT scan. Currently, muon tomography can resolve features to the sub-meter scale. This work consists of three parts to address the use of muons for subsurface characterization : 1) assess the use of muon scattering for estimating density differences of common rock types, 2 ) using muon flux to detect a void in rock, 3) measure muon direction by designing a new detector. Results from this project lay the groundwork for future directions in this field. Low-density objects can be detected by muons even when enclosed in high-density material like lead, and even small changes in density (e.g. changes due to fracturing of material) can be detected. Rock density has a linear relationship with muon scattering density per rock volume when this ratio is greater than 0.10 . Limitations on using muon scattering to assess density changes among common rock types have been identified. However, other analysis methods may show improved results for these relatively low density materials. Simulations show that muons can be used to image void space (e.g. tunnels) within rock but experimental results have been ambiguous. Improvements are suggested to improve imaging voids such as tunnels through rocks. Finally, a muon detector has been designed and tested to measure muon direction, which will improve signal-to-noise ratio and help address fundamental questions about the source of upgoing muons .

  14. Initiative Addresses Subsurface Energy and Environment Problems

    Science.gov (United States)

    Bodvarsson, Gudmundur S.; Majer, Ernest L.; Wang, Joseph S. Y.; Colwell, Frederick; Redden, George

    2006-01-01

    Members of the geoscience community are cooperating in conceptualizing fundamental, crosscutting research to address major obstacles to solving energy and environmental problems related to the subsurface, through the SECUREarth initiative, which began in 2004. Addressing problems, such as reliable nuclear waste storage and safe carbon dioxide (CO2) sequestration, are critical to maintaining an economical and safe energy supply and clean environment. A recent workshop in Golden, Colo., helped to further the development of the SECUREarth (Scientific Energy/Environmental Crosscutting Underground Research for Urgent Solutions to Secure the Earth's Future) initiative by identifying the key scientific challenges in the geosciences, as well as to target possible approaches for overcoming roadblocks.

  15. In-situ Planetary Subsurface Imaging System

    Science.gov (United States)

    Song, W.; Weber, R. C.; Dimech, J. L.; Kedar, S.; Neal, C. R.; Siegler, M.

    2017-12-01

    Geophysical and seismic instruments are considered the most effective tools for studying the detailed global structures of planetary interiors. A planet's interior bears the geochemical markers of its evolutionary history, as well as its present state of activity, which has direct implications to habitability. On Earth, subsurface imaging often involves massive data collection from hundreds to thousands of geophysical sensors (seismic, acoustic, etc) followed by transfer by hard links or wirelessly to a central location for post processing and computing, which will not be possible in planetary environments due to imposed mission constraints on mass, power, and bandwidth. Emerging opportunities for geophysical exploration of the solar system from Venus to the icy Ocean Worlds of Jupiter and Saturn dictate that subsurface imaging of the deep interior will require substantial data reduction and processing in-situ. The Real-time In-situ Subsurface Imaging (RISI) technology is a mesh network that senses and processes geophysical signals. Instead of data collection then post processing, the mesh network performs the distributed data processing and computing in-situ, and generates an evolving 3D subsurface image in real-time that can be transmitted under bandwidth and resource constraints. Seismic imaging algorithms (including traveltime tomography, ambient noise imaging, and microseismic imaging) have been successfully developed and validated using both synthetic and real-world terrestrial seismic data sets. The prototype hardware system has been implemented and can be extended as a general field instrumentation platform tailored specifically for a wide variety of planetary uses, including crustal mapping, ice and ocean structure, and geothermal systems. The team is applying the RISI technology to real off-world seismic datasets. For example, the Lunar Seismic Profiling Experiment (LSPE) deployed during the Apollo 17 Moon mission consisted of four geophone instruments

  16. Physiologically anaerobic microorganisms of the deep subsurface

    Energy Technology Data Exchange (ETDEWEB)

    Stevens, S.E. Jr.; Chung, K.T.

    1991-06-01

    This study seeks to determine numbers, diversity, and morphology of anaerobic microorganisms in 15 samples of subsurface material from the Idaho National Engineering Laboratory, in 18 samples from the Hanford Reservation and in 1 rock sample from the Nevada Test Site; set up long term experiments on the chemical activities of anaerobic microorganisms based on these same samples; work to improve methods for the micro-scale determination of in situ anaerobic microbial activity;and to begin to isolate anaerobes from these samples into axenic culture with identification of the axenic isolates.

  17. Transport of subsurface bacteria in porous media

    Energy Technology Data Exchange (ETDEWEB)

    Bales, R.C.; Arnold, R.G.; Gerba, C.P.

    1995-02-01

    The primary objective of this study was to develop tools with which to measure the advective transport of microorganisms through porous media. These tools were then applied to investigate the sorptive properties of representative microorganisms that were selected at random from the DOE`s deep subsurface collection of bacterial, maintained at Florida State University. The transport screening procedure that arose from this study was also used to investigate biological factors that affect the transport/sorption of biocolloids during their movement through porous media with the bulk advective flow.

  18. Parallel heater system for subsurface formations

    Science.gov (United States)

    Harris, Christopher Kelvin [Houston, TX; Karanikas, John Michael [Houston, TX; Nguyen, Scott Vinh [Houston, TX

    2011-10-25

    A heating system for a subsurface formation is disclosed. The system includes a plurality of substantially horizontally oriented or inclined heater sections located in a hydrocarbon containing layer in the formation. At least a portion of two of the heater sections are substantially parallel to each other. The ends of at least two of the heater sections in the layer are electrically coupled to a substantially horizontal, or inclined, electrical conductor oriented substantially perpendicular to the ends of the at least two heater sections.

  19. Instrumented Moles for Planetary Subsurface Regolith Studies

    Science.gov (United States)

    Richter, L. O.; Coste, P. A.; Grzesik, A.; Knollenberg, J.; Magnani, P.; Nadalini, R.; Re, E.; Romstedt, J.; Sohl, F.; Spohn, T.

    2006-12-01

    Soil-like materials, or regolith, on solar system objects provide a record of physical and/or chemical weathering processes on the object in question and as such possess significant scientific relevance for study by landed planetary missions. In the case of Mars, a complex interplay has been at work between impact gardening, aeolian as well as possibly fluvial processes. This resulted in regolith that is texturally as well as compositionally layered as hinted at by results from the Mars Exploration Rover (MER) missions which are capable of accessing shallow subsurface soils by wheel trenching. Significant subsurface soil access on Mars, i.e. to depths of a meter or more, remains to be accomplished on future missions. This has been one of the objectives of the unsuccessful Beagle 2 landed element of the ESA Mars Express mission having been equipped with the Planetary Underground Tool (PLUTO) subsurface soil sampling Mole system capable of self-penetration into regolith due to an internal electro-mechanical hammering mechanism. This lightweight device of less than 900 g mass was designed to repeatedly obtain and deliver to the lander regolith samples from depths down to 2 m which would have been analysed for organic matter and, specifically, organic carbon from potential extinct microbial activity. With funding from the ESA technology programme, an evolved Mole system - the Instrumented Mole System (IMS) - has now been developed to a readiness level of TRL 6. The IMS is to serve as a carrier for in situ instruments for measurements in planetary subsurface soils. This could complement or even eliminate the need to recover samples to the surface. The Engineering Model hardware having been developed within this effort is designed for accommodating a geophysical instrument package (Heat Flow and Physical Properties Package, HP3) that would be capable of measuring regolith physical properties and planetary heat flow. The chosen design encompasses a two-body Mole

  20. Prediction of future subsurface temperatures in Korea

    Science.gov (United States)

    Lee, Y.; Kim, S. K.; Jeong, J.; SHIN, E.

    2017-12-01

    The importance of climate change has been increasingly recognized because it has had the huge amount of impact on social, economic, and environmental aspect. For the reason, paleoclimate change has been studied intensively using different geological tools including borehole temperatures and future surface air temperatures (SATs) have been predicted for the local areas and the globe. Future subsurface temperatures can have also enormous impact on various areas and be predicted by an analytical method or a numerical simulation using measured and predicted SATs, and thermal diffusivity data of rocks. SATs have been measured at 73 meteorological observatories since 1907 in Korea and predicted at same locations up to the year of 2100. Measured SATs at the Seoul meteorological observatory increased by about 3.0 K from the year of 1907 to the present. Predicted SATs have 4 different scenarios depending on mainly CO2 concentration and national action plan on climate change in the future. The hottest scenario shows that SATs in Korea will increase by about 5.0 K from the present to the year of 2100. In addition, thermal diffusivity values have been measured on 2,903 rock samples collected from entire Korea. Data pretreatment based on autocorrelation analysis was conducted to control high frequency noise in thermal diffusivity data. Finally, future subsurface temperatures in Korea were predicted up to the year of 2100 by a FEM simulation code (COMSOL Multiphysics) using measured and predicted SATs, and thermal diffusivity data in Korea. At Seoul, the results of predictions show that subsurface temperatures will increase by about 5.4 K, 3.0 K, 1.5 K, and 0.2 K from the present to 2050 and then by about 7.9 K, 4.8 K, 2.5 K, and 0.5 K to 2100 at the depths of 10 m, 50 m, 100 m, and 200 m, respectively. We are now proceeding numerical simulations for subsurface temperature predictions for 73 locations in Korea.

  1. Subsurface Thermal Energy Storage for Improved Air Conditioning Efficiency

    Science.gov (United States)

    2016-11-01

    EW-201013) Subsurface Thermal Energy Storage for Improved Air Conditioning Efficiency November 2016 This document has been cleared for public...December 2016 4. TITLE AND SUBTITLE 5a. CONTRACT NUMBER 10-C-0027-A Cost and Performance Report. Subsurface Thermal Energy Storage for Improved...distribution is unlimited 13. SUPPLEMENTARY NOTES 14. ABSTRACT This project involved a field demonstration of subsurface thermal energy storage for

  2. Subsurface thermal coagulation of tissues using near infrared lasers

    Science.gov (United States)

    Chang, Chun-Hung Jack

    Noninvasive laser therapy is currently limited primarily to cosmetic dermatological applications such as skin resurfacing, hair removal, tattoo removal and treatment of vascular birthmarks. In order to expand applications of noninvasive laser therapy, deeper optical penetration of laser radiation in tissue as well as more aggressive cooling of the tissue surface is necessary. The near-infrared laser wavelength of 1075 nm was found to be the optimal laser wavelength for creation of deep subsurface thermal lesions in liver tissue, ex vivo, with contact cooling, preserving a surface tissue layer of 2 mm. Monte Carlo light transport, heat transfer, and Arrhenius integral thermal damage simulations were conducted at this wavelength, showing good agreement between experiment and simulations. Building on the initial results, our goal is to develop new noninvasive laser therapies for application in urology, specifically for treatment of female stress urinary incontinence (SUI). Various laser balloon probes including side-firing and diffusing fibers were designed and tested for both transvaginal and transurethral approaches to treatment. The transvaginal approach showed the highest feasibility. To further increase optical penetration depth, various types and concentrations of optical clearing agents were also explored. Three cadavers studies were performed to investigate and demonstrate the feasibility of laser treatment for SUI.

  3. Novel Micro-organisms controlling plant pathogens

    NARCIS (Netherlands)

    Köhl, J.

    2009-01-01

    The invention relates to control of pathogen caused diseases on leaves, fruits and ears in plants, such as apple scab (Venturia inaequalis by treatment of plant with an isolate of Cladosporium cladosporioides. The treatment is effective in both prevention and treatment of the fungal infection

  4. Novel Micro-organisms controlling plant pathogens

    NARCIS (Netherlands)

    Köhl, J.

    2010-01-01

    The invention relates to control of pathogen caused diseases on leaves, fruits and ears in plants, such as apple scab (Venturia inaequalis by treatment of plant with an isolate of Cladosporium cladosporioides. The treatment is effective in both prevention and treatment of the fungal infection

  5. Remote sensing based water-use efficiency evaluation in sub-surface irrigated wine grape vines

    Science.gov (United States)

    Zúñiga, Carlos Espinoza; Khot, Lav R.; Jacoby, Pete; Sankaran, Sindhuja

    2016-05-01

    Increased water demands have forced agriculture industry to investigate better irrigation management strategies in crop production. Efficient irrigation systems, improved irrigation scheduling, and selection of crop varieties with better water-use efficiencies can aid towards conserving water. In an ongoing experiment carried on in Red Mountain American Viticulture area near Benton City, Washington, subsurface drip irrigation treatments at 30, 60 and 90 cm depth, and 15, 30 and 60% irrigation were applied to satisfy evapotranspiration demand using pulse and continuous irrigation. These treatments were compared to continuous surface irrigation applied at 100% evapotranspiration demand. Thermal infrared and multispectral images were acquired using unmanned aerial vehicle during the growing season. Obtained results indicated no difference in yield among treatments (p<0.05), however there was statistical difference in leaf temperature comparing surface and subsurface irrigation (p<0.05). Normalized vegetation index obtained from the analysis of multispectral images showed statistical difference among treatments when surface and subsurface irrigation methods were compared. Similar differences in vegetation index values were observed, when irrigation rates were compared. Obtained results show the applicability of aerial thermal infrared and multispectral images to characterize plant responses to different irrigation treatments and use of such information in irrigation scheduling or high-throughput selection of water-use efficient crop varieties in plant breeding.

  6. Effect of owner-controlled acaricidal treatment on tick infestation and immune response to tick-borne pathogens in naturally infested dogs from Eastern Austria.

    Science.gov (United States)

    Leschnik, Michael; Feiler, Andrea; Duscher, Georg G; Joachim, Anja

    2013-03-09

    Tick-borne infections resulting from regular tick infestation in dogs are a common veterinary health problem all over the world. The application of repellent and acaricidal agents to prevent transmission of pathogens is a major protection strategy and has been proven to be highly effective in several trials under laboratory and natural conditions in dogs. Despite such promising results, many dog owners still report tick infestation in their dogs although acaricidal agents are used. Information about the current infection status and changes of the infection status regarding tick-borne diseases (TBD) in dogs treated by the owner's controlled acaricide application is lacking. In this study 30 dogs were each treated with permethrin, fipronil + S-methoprene, or served as untreated controls. Application of the acaricide was performed by the owner who decided when and how often to use the spot on preparation. Over a period of 11 months, dogs were clinically examined and sampled for antibody responses against Babesia canis, Anaplasma phagocytophilum, Borrelia burgdorferi s. l., and TBE virus before the study started, 6 months later and at the end of the investigation period. The permethrin acaricide was applied on average 3.40 times within the examination period, whereas the fipronil + S-methoprene medication was applied 3.03 times. Approximately 2/3 of all dogs, independent of the group, had a positive immune response to one or more pathogens. Three dogs developed clinical symptoms of canine babesiosis, all other dogs remained healthy. Individual number of ticks per dog or number of infections per dog did not correlate with the application rate, and the number of ticks per dog did not influence the number of infections per dog. As owners did not apply the acaricides regularly no influence on the number of infections could be documented although the number of ticks was clearly reduced by the application of the spot-on drugs. Clinical disease in dogs exposed to tick

  7. Atmospheric energy for subsurface life on Mars?

    Science.gov (United States)

    Weiss, B. P.; Yung, Y. L.; Nealson, K. H.

    2000-01-01

    The location and density of biologically useful energy sources on Mars will limit the biomass, spatial distribution, and organism size of any biota. Subsurface Martian organisms could be supplied with a large energy flux from the oxidation of photochemically produced atmospheric H(2) and CO diffusing into the regolith. However, surface abundance measurements of these gases demonstrate that no more than a few percent of this available flux is actually being consumed, suggesting that biological activity driven by atmospheric H(2) and CO is limited in the top few hundred meters of the subsurface. This is significant because the available but unused energy is extremely large: for organisms at 30-m depth, it is 2,000 times previous estimates of hydrothermal and chemical weathering energy and far exceeds the energy derivable from other atmospheric gases. This also implies that the apparent scarcity of life on Mars is not attributable to lack of energy. Instead, the availability of liquid water may be a more important factor limiting biological activity because the photochemical energy flux can only penetrate to 100- to 1,000-m depth, where most H(2)O is probably frozen. Because both atmospheric and Viking lander soil data provide little evidence for biological activity, the detection of short-lived trace gases will probably be a better indicator of any extant Martian life.

  8. Instruments for subsurface monitoring of geothermal subsidence

    Energy Technology Data Exchange (ETDEWEB)

    O' Rourke, J.E.; Ranson, B.B.

    1979-07-01

    The requirements for a subsurface geothermal subsidence instrument were reviewed. Available instruments for monitoring subsurface displacements, both vertical and horizontal, were studied and the most capable instruments identified. Techniques and materials for improving existing or developing new instruments were evaluated. Elements of sensor and signal technology with potential for high temperature monitoring of subsidence were identified. Drawing from these studies, methods to adapt production wells for monitoring were proposed and several new instrumentation systems were conceptually designed. Finally, four instrumentation systems were selected for future development. These systems are: triple sensor induction sensor probe (with casing collar markers); triple sensor gamma ray detector probe (with radioactive markers); triple sensor reed switch probe (with magnet markers); and triple sensor oscillator-type magnet detector probe (with magnet markers). All are designed for use in well casing incorporating slip couplings or bellows sections, although the gamma ray detector probe may also be used in unlined holes. These systems all measure vertical moement. Instruments to measure horizontal displacement due to geothermal subsidence were studied and the required instrument performance was judged to be beyond the state-of-the-art. Thus, no conceptual designs for instruments to monitor horizontal movement are included.

  9. Phylogenetic relationships among subsurface microorganisms. Progress report

    Energy Technology Data Exchange (ETDEWEB)

    Nierzwicki-Bauer, S.A.

    1991-12-31

    This project involves the development of group specific 16S ribosomal RNA-targeted oligonucleotide hybridization probes for the rapid detection of specific types of subsurface organisms (e.g., groups of microbes that share certain physiological traits). Major accomplishments for the period of 6/91 to 12/1/91 are described. Nine new probes have been synthesized on the basis of published 16S rRNA sequence data from the Ribosomal Database Project. We have initiated rapid screening of many of the subsurface microbial isolates obtained from the P24 borehole at the Savannah River Site. To date, we have screened approximately 50% of the isolates from P24. We have optimized our {und in situ} hybridization technique, and have developed a cell blot hybridization technique to screen 96 samples on a single blot. This is much faster than reading 96 individual slides. Preliminary experiments have been carried out which indicate specific nutrients can be used to amplify rRNA only in those organisms capable of metabolizing those nutrients. 1 tab., 2 figs.

  10. Geochemical Sensors of Fracturing in the Subsurface

    Science.gov (United States)

    Krogstad, E. J.; Burghardt, J. A.; Shen, S.; Wellsandt, T. C.; Brown, C. F.

    2016-12-01

    Although advancements have been made in the use of tracers for subsurface interrogation, there continue to be issues correlating results from laboratory experiments to field tests involving the analysis of tracers in flow back fluids. One of the largest confounding factors is due to the heterogeneity of the natural system vs. the materials used in bench-scale tests. Many laboratory tests use field-relevant materials; however, the samples are typically processed (i.e., crushed) such that they no longer represent the physical whole rock configuration of the reservoir. To avoid this shortcoming, we used specialized high pressure/temperature test equipment to quantitatively measure the development, surface area, and interconnectivity of hydraulically induced fractures on whole rock cores. The application involves the use of novel element-pair tracers (consisting of a suite of rare earth elements [REE]) to elucidate the total surface of the fractured system. Initial results indicate that interaction of the tracer with multiple rock types produces a significant depletion in select REE, largely as a function of surface area of the rock, and less as a function of the time of interaction. Three-dimensional X-ray microtomography is being used to validate surface area estimates derived via analysis of the chemical tracers. This talk will demonstrate how this novel sensor approach affords a simple, low-cost alternative for subsurface interrogation of fracture development.

  11. Method of imaging the electrical conductivity distribution of a subsurface

    Science.gov (United States)

    Johnson, Timothy C.

    2017-09-26

    A method of imaging electrical conductivity distribution of a subsurface containing metallic structures with known locations and dimensions is disclosed. Current is injected into the subsurface to measure electrical potentials using multiple sets of electrodes, thus generating electrical resistivity tomography measurements. A numeric code is applied to simulate the measured potentials in the presence of the metallic structures. An inversion code is applied that utilizes the electrical resistivity tomography measurements and the simulated measured potentials to image the subsurface electrical conductivity distribution and remove effects of the subsurface metallic structures with known locations and dimensions.

  12. Microbial communities in the deep subsurface

    Science.gov (United States)

    Krumholz, Lee R.

    The diversity of microbial populations and microbial communities within the earth's subsurface is summarized in this review. Scientists are currently exploring the subsurface and addressing questions of microbial diversity, the interactions among microorganisms, and mechanisms for maintenance of subsurface microbial communities. Heterotrophic anaerobic microbial communities exist in relatively permeable sandstone or sandy sediments, located adjacent to organic-rich deposits. These microorganisms appear to be maintained by the consumption of organic compounds derived from adjacent deposits. Sources of organic material serving as electron donors include lignite-rich Eocene sediments beneath the Texas coastal plain, organic-rich Cretaceous shales from the southwestern US, as well as Cretaceous clays containing organic materials and fermentative bacteria from the Atlantic Coastal Plain. Additionally, highly diverse microbial communities occur in regions where a source of organic matter is not apparent but where igneous rock is present. Examples include the basalt-rich subsurface of the Columbia River valley and the granitic subsurface regions of Sweden and Canada. These subsurface microbial communities appear to be maintained by the action of lithotrophic bacteria growing on H2 that is chemically generated within the subsurface. Other deep-dwelling microbial communities exist within the deep sediments of oceans. These systems often rely on anaerobic metabolism and sulfate reduction. Microbial colonization extends to the depths below which high temperatures limit the ability of microbes to survive. Energy sources for the organisms living in the oceanic subsurface may originate as oceanic sedimentary deposits. In this review, each of these microbial communities is discussed in detail with specific reference to their energy sources, their observed growth patterns, and their diverse composition. This information is critical to develop further understanding of subsurface

  13. Emerge - A Python environment for the modeling of subsurface transfers

    Science.gov (United States)

    Lopez, S.; Smai, F.; Sochala, P.

    2014-12-01

    The simulation of subsurface mass and energy transfers often relies on specific codes that were mainly developed using compiled languages which usually ensure computational efficiency at the expense of relatively long development times and relatively rigid software. Even if a very detailed, possibly graphical, user-interface is developed the core numerical aspects are rarely accessible and the smallest modification will always need a compilation step. Thus, user-defined physical laws or alternative numerical schemes may be relatively difficult to use. Over the last decade, Python has emerged as a popular and widely used language in the scientific community. There already exist several libraries for the pre and post-treatment of input and output files for reservoir simulators (e.g. pytough). Development times in Python are considerably reduced compared to compiled languages, and programs can be easily interfaced with libraries written in compiled languages with several comprehensive numerical libraries that provide sequential and parallel solvers (e.g. PETSc, Trilinos…). The core objective of the Emerge project is to explore the possibility to develop a modeling environment in full Python. Consequently, we are developing an open python package with the classes/objects necessary to express, discretize and solve the physical problems encountered in the modeling of subsurface transfers. We heavily relied on Python to have a convenient and concise way of manipulating potentially complex concepts with a few lines of code and a high level of abstraction. Our result aims to be a friendly numerical environment targeting both numerical engineers and physicist or geoscientists with the possibility to quickly specify and handle geometries, arbitrary meshes, spatially or temporally varying properties, PDE formulations, boundary conditions…

  14. Tidal dissipation in the subsurface ocean of Enceladus

    Science.gov (United States)

    Matsuyama, I.; Hay, H.; Nimmo, F.; Kamata, S.

    2017-12-01

    Icy satellites of the outer solar system have emerged as potential habitable worlds due to the presence of subsurface oceans. As a long-term energy source, tidal heating in these oceans can influence the survivability of subsurface oceans, and the thermal, rotational, and orbital evolution of these satellites. Additionally, the spatial and temporal variation of tidal heating has implications for the interior structure and spacecraft observations. Previous models for dissipation in thin oceans are not generally applicable to icy satellites because either they ignore the presence of an overlying solid shell or use a thin shell membrane approximation. We present a new theoretical treatment for tidal dissipation in thin oceans with overlying shells of arbitrary thickness and apply it to Enceladus. The shell's resistance to ocean tides increases with shell thickness, reducing tidal dissipation as expected. Both the magnitude of energy dissipation and the resonant ocean thicknesses decrease as the overlying shell thickness increases, as previously shown using a membrane approximation. In contrast to previous work based on the traditional definition of the tidal quality factor, Q, our new definition is consistent with higher energy dissipation for smaller Q, and introduces a lower limit on Q. The dissipated power and tides are not in phase with the forcing tidal potential due to the delayed ocean response. The phase lag depends on the Rayleigh friction coefficient and ocean and shell thicknesses, which implies that phase lag observations can be used to constrain these parameters. Eccentricity heating produces higher dissipation near the poles, while obliquity heating produces higher dissipation near the equator, in contrast to the dissipation patterns in the shell. The time-averaged surface distribution of tidal heating can generate lateral shell thickness variations, providing an additional constraint on the Rayleigh friction coefficient. Explaining the endogenic power

  15. The DOE Subsurface (SubTER) Initiative: Revolutionizing Responsible use of the Subsurface for Energy Production and Storage

    Science.gov (United States)

    Hubbard, S. S.; Walck, M. C.; Blankenship, D.; Bonneville, A.; Bromhal, G. S.; Daley, T. M.; Pawar, R.; Polsky, Y.; Mattson, E.; Mellors, R. J.

    2015-12-01

    The subsurface supplies more than 80% of the U.S.'s total energy needs through geothermal and hydrocarbon strategies and also provides vast potential for safe storage of CO2 and disposal of nuclear waste. Responsible and efficient use of the subsurface poses many challenges, many of which require the capability to monitor and manipulate sub-surface stress, fractures, and fluid flow at all scales. Adaptive control of subsurface fractures and flow is a multi-disciplinary challenge that, if achieved, has the potential to transform all subsurface energy strategies. As part of the U.S. Department of Energy's SubTER (Subsurface Technology and Engineering Research development and demonstration) initiative, a multi-National Laboratory team is developing next-generation approaches that will allow for adaptive control of subsurface fractures and flow. SubTER has identified an initial suite of technical thrust areas to focus work, and has initiated a number of small projects. This presentation will describe early progress associated with the SubTER technical topic areas of wellbore integrity, subsurface stress and induced seismicity, permeability manipulation and new subsurface signals. It will also describe SubTER plans, and provide a venue to solicit suggestions and discuss potential partnerships associated with future research directions.

  16. Direct thermal effects of the Hadean bombardment did not limit early subsurface habitability

    Science.gov (United States)

    Grimm, R. E.; Marchi, S.

    2018-03-01

    Intense bombardment is considered characteristic of the Hadean and early Archean eons, yet some detrital zircons indicate that near-surface water was present and thus at least intervals of clement conditions may have existed. We investigate the habitability of the top few kilometers of the subsurface by updating a prior approach to thermal evolution of the crust due to impact heating, using a revised bombardment history, a more accurate thermal model, and treatment of melt sheets from large projectiles (>100 km diameter). We find that subsurface habitable volume grows nearly continuously throughout the Hadean and early Archean (4.5-3.5 Ga) because impact heat is dissipated rapidly compared to the total duration and waning strength of the bombardment. Global sterilization was only achieved using an order of magnitude more projectiles in 1/10 the time. Melt sheets from large projectiles can completely resurface the Earth several times prior to ∼4.2 Ga but at most once since then. Even in the Hadean, melt sheets have little effect on habitability because cooling times are short compared to resurfacing intervals, allowing subsurface biospheres to be locally re-established by groundwater infiltration between major impacts. Therefore the subsurface is always habitable somewhere, and production of global steam or silicate-vapor atmospheres are the only remaining avenues to early surface sterilization by bombardment.

  17. Subsurface intakes for seawater reverse osmosis facilities: Capacity limitation, water quality improvement, and economics

    KAUST Repository

    Missimer, Thomas M.

    2013-08-01

    The use of subsurface intake systems for seawater reverse osmosis (SWRO) desalination plants significantly improves raw water quality, reduces chemical usage and environmental impacts, decreases the carbon footprint, and reduces cost of treated water to consumers. These intakes include wells (vertical, angle, and radial type) and galleries, which can be located either on the beach or in the seabed. Subsurface intakes act both as intakes and as part of the pretreatment system by providing filtration and active biological treatment of the raw seawater. Recent investigations of the improvement in water quality made by subsurface intakes show lowering of the silt density index by 75 to 90%, removal of nearly all algae, removal of over 90% of bacteria, reduction in the concentrations of TOC and DOC, and virtual elimination of biopolymers and polysaccharides that cause organic biofouling of membranes. Economic analyses show that overall SWRO operating costs can be reduced by 5 to 30% by using subsurface intake systems. Although capital costs can be slightly to significantly higher compared to open-ocean intake system costs, a preliminary life-cycle cost analysis shows significant cost saving over operating periods of 10 to 30. years. © 2013 Elsevier B.V.

  18. Antimicrobial resistance of mastitis pathogens.

    Science.gov (United States)

    Oliver, Stephen P; Murinda, Shelton E

    2012-07-01

    Antibiotics are used extensively in the dairy industry to combat disease and to improve animal performance. Antibiotics such as penicillin, cephalosporin, streptomycin, and tetracycline are used for the treatment and prevention of diseases affecting dairy cows caused by a variety of gram-positive and gram-negative bacteria. Antibiotics are often administrated routinely to entire herds to prevent mastitis during the dry period. An increase in the incidence of disease in a herd generally results in increased use of antimicrobials, which in turn increases the potential for antibiotic residues in milk and the potential for increased bacterial resistance to antimicrobials. Continued use of antibiotics in the treatment and prevention of diseases of dairy cows will continue to be scrutinized. It is clear that strategies employing the prudent use of antimicrobials are needed. This clearly illustrates the importance of effective herd disease prevention and control programs. Based on studies published to date, scientific evidence does not support widespread, emerging resistance among mastitis pathogens to antibacterial drugs even though many of these antibiotics have been used in the dairy industry for treatment and prevention of disease for several decades. However, it is clear that use of antibiotics in dairy cows can contribute to increased antimicrobial resistance. While antimicrobial resistance does occur, we are of the opinion that the advantages of using antibiotics for the treatment of mastitis far outweigh the disadvantages. The clinical consequences of antimicrobial resistance of dairy pathogens affecting humans appear small. Antimicrobial resistance among dairy pathogens, particularly those found in milk, is likely not a human health concern as long as the milk is pasteurized. However, there are an increasing number of people who choose to consume raw milk. Transmission of an antimicrobial-resistant mastitis pathogen and/or foodborne pathogen to humans could occur

  19. The Intersection of Care Seeking and Clinical Capacity for Patients With Highly Pathogenic Avian Influenza A (H5N1) Virus in Indonesia: Knowledge and Treatment Practices of the Public and Physicians.

    Science.gov (United States)

    Kreslake, Jennifer M; Wahyuningrum, Yunita; Iuliano, Angela D; Storms, Aaron D; Lafond, Kathryn E; Mangiri, Amalya; Praptiningsih, Catharina Y; Safi, Basil; Uyeki, Timothy M; Storey, J Douglas

    2016-12-01

    Indonesia has the highest human mortality from highly pathogenic avian influenza (HPAI) A (H5N1) virus infection in the world. A survey of households (N=2520) measured treatment sources and beliefs among symptomatic household members. A survey of physicians (N=554) in various types of health care facilities measured knowledge, assessment and testing behaviors, and perceived clinical capacity. Households reported confidence in health care system capacity but infrequently sought treatment for potential HPAI H5N1 signs/symptoms. More clinicians were confident in their knowledge of diagnosis and treatment than in the adequacy of related equipment and resources at their facilities. Physicians expressed awareness of the HPAI H5N1 suspect case definition, yet expressed only moderate knowledge in questioning symptomatic patients about exposures. Self-reported likelihood of testing for HPAI H5N1 virus was high after learning of certain exposures. Knowledge of antiviral treatment was moderate, but it was higher among clinicians in puskesmas. Physicians in private outpatient clinics, the most heavily used facilities, reported the lowest confidence in their diagnostic and treatment capabilities. Educational campaigns can encourage recall of possible poultry exposure when patients are experiencing signs/symptoms and can raise awareness of the effectiveness of antivirals to drive people to seek health care. Clinicians may benefit from training regarding exposure assessment and referral procedures, particularly in private clinics. (Disaster Med Public Health Preparedness. 2016;10:838-847).

  20. New trends in emerging pathogens.

    Science.gov (United States)

    Skovgaard, Niels

    2007-12-15

    The emergence of pathogens is the result of a number of impact in all parts of the food chain. The emerging technologies in food production explain how new pathogens can establish themselves in the food chain and compromise food safety. The impact of the food technology is analysed for several bacteria, such as Yersinia, Campylobacter, Arcobacter, Helicobacter pullorum, Enterobacter sakazakii, Mycobacterium avium spp. paratuberculosis, prions related to vCJD and others. The importance of the ability of many microbes to form VBNC forms is elaborated on. Research on culture independent methods may address this outstanding issue to the better understanding of emerging pathogens. The "demerging" of pathogens also occur, and examples of this are explained. The reaction of bacteria to stresses and sublethal treatments, and how exposure to one stress factor can confer resistance to other stresses, literally speaking causing contagious resistance, are explained. The implication of this e.g. in modern approaches of food preservation, such as Minimally processed Foods, is considerable. Intestinal colonization of EHEC may be regulated by Quorum sensing, and this ability of microbes plays an important role in the colonization of microbes in food and on food processing equipment, an important factor in the emergence of pathogens. The emergence of Saccharomyces cerevisiae, as an opportunistic human pathogen, used for centuries for food and production of alcoholic beverages, calls for research in molecular tools to distinguish between probiotic and clinical strains. Cyclospora cayetanensis and Norovirus outbreaks can no longer be designated as emerging pathogens, they share however one characteristic in the epidemiology of emerging nature, the importance of the hygiene in the primary production stage, including supply of potable water, and the application of GMP and the HACCP principles in the beginning of the food chain. Hepatitis E virus is a potential emerging food borne

  1. Subsurface data visualization in Virtual Reality

    Science.gov (United States)

    Krijnen, Robbert; Smelik, Ruben; Appleton, Rick; van Maanen, Peter-Paul

    2017-04-01

    Due to their increasing complexity and size, visualization of geological data is becoming more and more important. It enables detailed examining and reviewing of large volumes of geological data and it is often used as a communication tool for reporting and education to demonstrate the importance of the geology to policy makers. In the Netherlands two types of nation-wide geological models are available: 1) Layer-based models in which the subsurface is represented by a series of tops and bases of geological or hydrogeological units, and 2) Voxel models in which the subsurface is subdivided in a regular grid of voxels that can contain different properties per voxel. The Geological Survey of the Netherlands (GSN) provides an interactive web portal that delivers maps and vertical cross-sections of such layer-based and voxel models. From this portal you can download a 3D subsurface viewer that can visualize the voxel model data of an area of 20 × 25 km with 100 × 100 × 5 meter voxel resolution on a desktop computer. Virtual Reality (VR) technology enables us to enhance the visualization of this volumetric data in a more natural way as compared to a standard desktop, keyboard mouse setup. The use of VR for data visualization is not new but recent developments has made expensive hardware and complex setups unnecessary. The availability of consumer of-the-shelf VR hardware enabled us to create an new intuitive and low visualization tool. A VR viewer has been implemented using the HTC Vive head set and allows visualization and analysis of the GSN voxel model data with geological or hydrogeological units. The user can navigate freely around the voxel data (20 × 25 km) which is presented in a virtual room at a scale of 2 × 2 or 3 × 3 meters. To enable analysis, e.g. hydraulic conductivity, the user can select filters to remove specific hydrogeological units. The user can also use slicing to cut-off specific sections of the voxel data to get a closer look. This slicing

  2. ASSESSMENT OF THE SUBSURFACE FATE OF MONOETHANOLAMINE

    Energy Technology Data Exchange (ETDEWEB)

    James A. Sorensen; John R. Gallagher; Lori G. Kays

    2000-05-01

    Burial of amine reclaimer unit sludges and system filters has resulted in contamination of soil at the CanOxy Okotoks decommissioned sour gas-processing plant with amines, amine byproducts, and salts. A three-phase research program was devised to investigate the natural attenuation process that controls the subsurface transport and fate of these contaminants and to apply the results toward the development of a strategy for the remediation of this type of contamination in soils. Phase I experimental activities examined interactions between monoethanolamine (MEA) and sediment, the biodegradability of MEA in soils at various concentrations and temperatures, and the biodegradability of MEA sludge contamination in a soil slurry bioreactor. The transport and fate of MEA in the subsurface was found to be highly dependant on the nature of the release, particularly MEA concentration and conditions of the subsurface environment, i.e., pH, temperature, and oxygen availability. Pure compound biodegradation experiments in soil demonstrated rapid biodegradation of MEA under aerobic conditions and moderate temperatures (>6 C). Phase II landfarming activities confirmed that these contaminants are readily biodegradable in soil under ideal laboratory conditions, yet considerable toxicity was observed in the remaining material. Examination of water extracts from the treated soil suggested that the toxicity is water-soluble. Phase II activities led to the conclusion that landfarming is not the most desirable bioremediation technique; however, an engineered biopile with a leachate collection system could remove the remaining toxic fraction from the soil. Phase III was initiated to conduct field-based experimental activities to examine the optimized remediation technology. A pilot-scale engineered biopile was constructed at a decommissioned gas-sweetening facility in Okotoks, Alberta, Canada. On the basis of a review of the analytical and performance data generated from soil and

  3. Wet-dry cycles impact DOM retention in subsurface soils

    Science.gov (United States)

    Olshansky, Yaniv; Root, Robert A.; Chorover, Jon

    2018-02-01

    Transport and reactivity of carbon in the critical zone are highly controlled by reactions of dissolved organic matter (DOM) with subsurface soils, including adsorption, transformation and exchange. These reactions are dependent on frequent wet-dry cycles common to the unsaturated zone, particularly in semi-arid regions. To test for an effect of wet-dry cycles on DOM interaction and stabilization in subsoils, samples were collected from subsurface (Bw) horizons of an Entisol and an Alfisol from the Catalina-Jemez Critical Zone Observatory and sequentially reacted (four batch steps) with DOM extracted from the corresponding soil litter layers. Between each reaction step, soils either were allowed to air dry (wet-dry treatment) before introduction of the following DOM solution or were maintained under constant wetness (continually wet treatment). Microbial degradation was the dominant mechanism of DOM loss from solution for the Entisol subsoil, which had higher initial organic C content, whereas sorptive retention predominated in the lower C Alfisol subsoil. For a given soil, bulk dissolved organic C losses from solution were similar across treatments. However, a combination of Fourier transform infrared (FTIR) and near-edge X-ray absorption fine structure (NEXAFS) spectroscopic analyses revealed that wet-dry treatments enhanced the interactions between carboxyl functional groups and soil particle surfaces. Scanning transmission X-ray microscopy (STXM) data suggested that cation bridging by Ca2+ was the primary mechanism for carboxyl association with soil surfaces. STXM data also showed that spatial fractionation of adsorbed OM on soil organo-mineral surfaces was diminished relative to what might be inferred from previously published observations pertaining to DOM fractionation on reaction with specimen mineral phases. This study provides direct evidence of the role of wet-dry cycles in affecting sorption reactions of DOM to a complex soil matrix. In the soil

  4. Wet–dry cycles impact DOM retention in subsurface soils

    Directory of Open Access Journals (Sweden)

    Y. Olshansky

    2018-02-01

    Full Text Available Transport and reactivity of carbon in the critical zone are highly controlled by reactions of dissolved organic matter (DOM with subsurface soils, including adsorption, transformation and exchange. These reactions are dependent on frequent wet–dry cycles common to the unsaturated zone, particularly in semi-arid regions. To test for an effect of wet–dry cycles on DOM interaction and stabilization in subsoils, samples were collected from subsurface (Bw horizons of an Entisol and an Alfisol from the Catalina-Jemez Critical Zone Observatory and sequentially reacted (four batch steps with DOM extracted from the corresponding soil litter layers. Between each reaction step, soils either were allowed to air dry (wet–dry treatment before introduction of the following DOM solution or were maintained under constant wetness (continually wet treatment. Microbial degradation was the dominant mechanism of DOM loss from solution for the Entisol subsoil, which had higher initial organic C content, whereas sorptive retention predominated in the lower C Alfisol subsoil. For a given soil, bulk dissolved organic C losses from solution were similar across treatments. However, a combination of Fourier transform infrared (FTIR and near-edge X-ray absorption fine structure (NEXAFS spectroscopic analyses revealed that wet–dry treatments enhanced the interactions between carboxyl functional groups and soil particle surfaces. Scanning transmission X-ray microscopy (STXM data suggested that cation bridging by Ca2+ was the primary mechanism for carboxyl association with soil surfaces. STXM data also showed that spatial fractionation of adsorbed OM on soil organo-mineral surfaces was diminished relative to what might be inferred from previously published observations pertaining to DOM fractionation on reaction with specimen mineral phases. This study provides direct evidence of the role of wet–dry cycles in affecting sorption reactions of DOM to a complex soil

  5. PASSIVE TREATMENT OF ACID ROCK DRAINAGE FROM A SUBSURFACE MINE

    Science.gov (United States)

    Acidic, metal-contaminated drainages are a critical problem facing many areas of the world. Acid rock drainage results when metal sulfide minerals, particularly pyrite, are oxidized by exposure to oxygen and water. The deleterious effects of these drainages on receiving streams a...

  6. Repository Subsurface Preliminary Fire Hazard Analysis

    International Nuclear Information System (INIS)

    Logan, Richard C.

    2001-01-01

    This fire hazard analysis identifies preliminary design and operations features, fire, and explosion hazards, and provides a reasonable basis to establish the design requirements of fire protection systems during development and emplacement phases of the subsurface repository. This document follows the Technical Work Plan (TWP) (CRWMS M and O 2001c) which was prepared in accordance with AP-2.21Q, ''Quality Determinations and Planning for Scientific, Engineering, and Regulatory Compliance Activities''; Attachment 4 of AP-ESH-008, ''Hazards Analysis System''; and AP-3.11Q, ''Technical Reports''. The objective of this report is to establish the requirements that provide for facility nuclear safety and a proper level of personnel safety and property protection from the effects of fire and the adverse effects of fire-extinguishing agents

  7. Physiologically anaerobic microorganisms of the deep subsurface

    Energy Technology Data Exchange (ETDEWEB)

    Stevens, S.E. Jr.; Chung, K.T.

    1992-06-01

    A variety of different media were used to isolate facultatively (FAB) and obligately anaerobic bacteria (OAB). These bacteria were isolated from core subsamples obtained from boreholes at the Idaho National Engineering Lab. (INEL) or at the Hanford Lab. (Yakima). Core material was sampled at various depths to 600 feet below the surface. All core samples with culturable bacteria contained at least FAB making thisthe most common physiological type of anaerobic bacteria present in the deep subsurface at these two sites. INEL core samples are characterized by isolates of both FAB and OAB. No isolates of acetogenic, methanogenic, or sulfate reducing bacteria were obtained. Yakima core samples are characterized by a marked predominance of FAB in comparison to OAB. In addition, isolates of acetogenic, methanogenic, and sulfate reducing bacteria were obtained. The Yakima site has the potential for complete anaerobic mineralization of organic compounds whereas this potential appears to be lacking at INEL.

  8. Repository Subsurface Preliminary Fire Hazard Analysis

    Energy Technology Data Exchange (ETDEWEB)

    Richard C. Logan

    2001-07-30

    This fire hazard analysis identifies preliminary design and operations features, fire, and explosion hazards, and provides a reasonable basis to establish the design requirements of fire protection systems during development and emplacement phases of the subsurface repository. This document follows the Technical Work Plan (TWP) (CRWMS M&O 2001c) which was prepared in accordance with AP-2.21Q, ''Quality Determinations and Planning for Scientific, Engineering, and Regulatory Compliance Activities''; Attachment 4 of AP-ESH-008, ''Hazards Analysis System''; and AP-3.11Q, ''Technical Reports''. The objective of this report is to establish the requirements that provide for facility nuclear safety and a proper level of personnel safety and property protection from the effects of fire and the adverse effects of fire-extinguishing agents.

  9. Longevity of magma in the near subsurface

    International Nuclear Information System (INIS)

    Marsh, B.D.; Resmini, R.G.

    1992-01-01

    Small, sporadic occurrences of basaltic volcanism are particularly difficult to evaluate in terms of long term threat to mankind because of their short overall eruptive history. Insight into future eruptive vigor and possible subsurface magma storage may be furnished by studying the ages of crystals in the eruptive products themselves. In this paper, the authors do this by applying the method of crystal size distribution theory (CSD) to a stack of basaltic lavas within the Nevada test site; namely the Dome Mtn. lavas. Preliminary results suggest a pre-eruptive residence time of 10 - 20 years, decreasing with decreasing age of lava within the sequence. These times are similar to those found by M.T. Mangan for the 1959 Kilauea (Hawaii) eruptions, and may suggest a relatively vigorous magmatic system at this time some 8 m.y. ago. Work is progressing on a greatly expanded CSD analysis of the Dome Mtn. lavas

  10. Armored Enzyme Nanoparticles for Remediation of Subsurface

    Energy Technology Data Exchange (ETDEWEB)

    Grate, Jay W.

    2005-09-01

    The remediation of subsurface contaminants is a critical problem for the Department of Energy, other government agencies, and our nation. Severe contamination of soil and groundwater exists at several DOE sites due to various methods of intentional and unintentional release. Given the difficulties involved in conventional removal or separation processes, it is vital to develop methods to transform contaminants and contaminated earth/water to reduce risks to human health and the environment. Transformation of the contaminants themselves may involve conversion to other immobile species that do not migrate into well water or surface waters, as is proposed for metals and radionuclides; or degradation to harmless molecules, as is desired for organic contaminants. Transformation of contaminated earth (as opposed to the contaminants themselves) may entail reductions in volume or release of bound contaminants for remediation.

  11. Acclimation of subsurface microbial communities to mercury

    DEFF Research Database (Denmark)

    de Lipthay, Julia R; Rasmussen, Lasse D; Øregaard, Gunnar

    2008-01-01

    We studied the acclimation to mercury of bacterial communities of different depths from contaminated and noncontaminated floodplain soils. The level of mercury tolerance of the bacterial communities from the contaminated site was higher than those of the reference site. Furthermore, the level...... of mercury tolerance and functional versatility of bacterial communities in contaminated soils initially were higher for surface soil, compared with the deeper soils. However, following new mercury exposure, no differences between bacterial communities were observed, which indicates a high adaptive potential...... of the subsurface communities, possibly due to differences in the availability of mercury. IncP-1 trfA genes were detected in extracted community DNA from all soil depths of the contaminated site, and this finding was correlated to the isolation of four different mercury-resistance plasmids, all belonging...

  12. Letter report: Ari Patrinos -- Subsurface bioremediation

    International Nuclear Information System (INIS)

    Happer, W.; MacDonald, G.J.; Ruderman, M.A.; Treiman, S.B.

    1995-01-01

    During the past summer, the authors had the opportunity to examine aspects of the remediation program of the Department of Energy (DOE). The most important conclusion that they have come to is that there is an urgent need to mount a comprehensive research program in remediation. It is also clear to them that DOE does not have the funding to carry out a program on the scale that is required. On the other hand, Environmental Management could very well fund such activities. They would hope that in the future there would be close collaboration between Environmental Management and Energy Research in putting together a comprehensive and well thought-out research program. Here, the authors comment on one aspect of remediation: subsurface bioremediation

  13. Subsurface Carbon Cycling Below the Root Zone

    Science.gov (United States)

    Wan, J.; Dong, W.; Kim, Y.; Tokunaga, T. K.; Bill, M.; Conrad, M. E.; Williams, K. H.; Long, P. E.; Hubbard, S. S.

    2014-12-01

    Carbon in the subsurface below the root zone is an important yet poorly understood link in the terrestrial C cycle, interfacing between overlying soil and downstream aquatic systems. Thus, the nature and behavior of C in the vadose zone and groundwater, particularly the dynamics of mobile dissolved and suspended aqueous species, need to be understood for predicting C cycling and responses to climate change. This study is designed to understand the C balance (influxes, effluxes, and sequestration) and mechanisms controlling subsurface organic and inorganic C transport and transformation. Our initial investigations are being conducted at the Rifle Site floodplain along the Colorado River, in Colorado (USA). Within this floodplain, sediment samples were collected and sampling/monitoring instruments were installed down to 7 m depth at three sites. Pore water and gas samplers at 0.5 m depth intervals within the ~3.5 m deep vadose zone, and multilevel aquifer samplers have yielded depth- and time-resolved profiles of dissolved and suspended organic and inorganic C, and CO2 for over 1.5 years. Analyses conducted to determine seasonally and vertically resolved geochemical profiles show that dissolved organic matter (DOM) characteristics vary among three distinct hydrobiogeochemical zones; the vadose zone, capillary fringe, and saturated zone. The concentrations of dissolved organic matter (DOM) are many times higher in the vadose zone and the capillary fringe than in groundwater, and vary seasonally. The DOM speciation, aqueous geochemistry, solid phase analyses, and d13C isotope data show the importance of both biotic and abiotic C transformations during transport through the vertical gradients of moisture and temperature. In addition to DOM, suspended organic C and bacteria have been collected from samplers within the capillary fringe. Based on the field-based findings, long-term laboratory column experiments are being conducted under simulated field moisture

  14. Subsurface material identification and sensor selection

    Science.gov (United States)

    T, H.; Reghunadh, R.; Ramesh, M. V.

    2017-12-01

    In India, most of the landslides occur during monsoon season and causes huge loss of life and property. Design of an early warning system for highly landslide prone area will reduce losses to a great extent. The in-situ monitoring systems needs deployment of several sensors inside a borehole for monitoring a particular slope. Amrita Center for Wireless Networks and Applications (AmritaWNA), Amrita University has designed, developed and deployed a Wireless Sensor Network (WSN) for real time landslide monitoring using geotechnical instruments and sensors like rain gauge, moisture sensor, piezometer, strain gauge, tilt meter and geophone inside a Deep Earth Probe (DEP) at different locations. These sensors provide point measurements of the subsurface at a higher accuracy. Every landslide prone terrain is unique with respect to its geology, hydrological conditions, meteorological conditions, velocity of movement etc. The decision of installing different geotechnical instruments in a landslide prone terrain is a crucial step to be considered. Rain gauge, moisture sensor, and piezometer are usually used in clay rich areas to sense the moisture and pore pressure values. Geophone and Crack meter are instruments used in rocky areas to monitor cracks and vibrations associated with a movement. Inclinometer and Strain gauge are usually placed inside a casing and can be used in both rocky and soil areas. In order to place geotechnical instruments and sensors at appropriate places Electrical Resistivity Tomography (ERT) method can be used. Variation in electrical resistivity values indicate the changes in composition, layer thickness, or contaminant levels. The derived true resistivity image can be used for identifying the type of materials present in the subsurface at different depths. We have used this method for identifying the type of materials present in our site at Chandmari (Sikkim). Fig 1 shows the typical resistivity values of a particular area in Chandmari site. The

  15. Geochemical characterization of subsurface sediments in the Netherlands

    NARCIS (Netherlands)

    Huisman, D.J.

    1998-01-01

    Traditionally, the Netherlands' subsurface is mainly used to obtain good quality drinking and industrial waters from the different aquifers. Due to the lack of space on the surface, increasing environmental problems and demand for energy, the subsurface will be used increasingly for other

  16. Water and nitrogen requirements of subsurface drip irrigated pomegranate

    Science.gov (United States)

    Surface drip irrigation is a well-developed practice for both annual and perennial crops. The use of subsurface drip is a well-established practice in many annual row crops, e.g. tomatoes, strawberries, lettuce. However, the use of subsurface drip on perennial crops has been slow to develop. With th...

  17. Monitoring subsurface coal fires in Jharia coalfield using ...

    Indian Academy of Sciences (India)

    hazardous coal fire areas as well as effective implementation of public safety measures. 1. Introduction. Accounting for nearly 70% of India's .... potentially hazardous zones with high probability of subsurface coal fire occurrence. 2. Study area .... subsurface materials (Saraf et al. 1995). Here, the threshold temperature was ...

  18. Subsurface melting of nylon by friction-induced vibrations

    NARCIS (Netherlands)

    Vroegop, P.H.; Bosma, R.

    1985-01-01

    Dry sliding of nylon on steel may lead to subsurface recrystallization of the polymer. This phenomenon is described and explained by subsurface melting due to internal heating as a result of the dissipation of frictioninduced vibrations at frequencies above 10 kHz. A vibration model relating the

  19. Modelling Interconnectedness of Subsurface Flow Processes from a ...

    African Journals Online (AJOL)

    The study determined subsurface flow processes of 92.3 ha catchment area in order to examine functional relationship among the surface and subsurface flow variables from the water balance components data. Days without rainfall had zero infiltration while peak values of infiltrated water corresponded with peak rainfall.

  20. Pollutant removal in subsurface wastewater infiltration systems with ...

    African Journals Online (AJOL)

    Pollutant removal in subsurface wastewater infiltration systems with/without intermittent aeration under different organic pollutant loadings. Hexin Fei1#, Deli ... Organic pollutant and nitrogen removal performance of subsurface wastewater infiltration systems (SWISs) with and .... aeration was turned off, at a depth of 50 cm.

  1. Influence of biofilms on colloid mobility in the subsurface

    NARCIS (Netherlands)

    Strathmann, M.; Leon Morales, C.F.; Flemming, H.C.

    2007-01-01

    Transport processes in subsurface environments are determined by complex interactions between the soil matrix and dissolved as well as particulate substances. Biofilms play an important role in the transport of colloids in the subsurface, since biofilms cover the solid soil matrix and hence

  2. Holocene subsurface temperature variability in the eastern Antarctic continental margin

    NARCIS (Netherlands)

    Kim, J.H.; Crosta, X.; Willmott, V.; Renssen, H.; Bonnin, J.; Helmke, P.; Schouten, S.; Sinninghe Damsté, J.S.

    2012-01-01

    We reconstructed subsurface (similar to 45-200 m water depth) temperature variability in the eastern Antarctic continental margin during the late Holocene, using an archaeal lipid-based temperature proxy (TEX86 L). Our results reveal that subsurface temperature changes were probably positively

  3. Selection of organic chemicals for subsurface transport. Subsurface transport program interaction seminar series. Summary

    International Nuclear Information System (INIS)

    Zachara, J.M.; Wobber, F.J.

    1984-11-01

    Model compounds are finding increasing use in environmental research. These individual compounds are selected as surrogates of important contaminants present in energy/defense wastes and their leachates and are used separately or as mixtures in research to define the anticipated or ''model'' environmental behavior of key waste components and to probe important physicochemical mechanisms involved in transport and fate. A seminar was held in Germantown, Maryland, April 24-25, 1984 to discuss the nature of model organic compounds being used for subsurface transport research. The seminar included participants experienced in the fields of environmental chemistry, microbiology, geohydrology, biology, and analytic chemistry. The objectives of the seminar were two-fold: (1) to review the rationale for the selection of organic compounds adopted by research groups working on the subsurface transport of organics, and (2) to evaluate the use of individual compounds to bracket the behavior of compound classes and compound constructs to approximate the behavior of complex organic mixtures

  4. Risk factors for drug-resistant pathogens in immunocompetent patients with pneumonia: Evaluation of PES pathogens.

    Science.gov (United States)

    Ishida, Tadashi; Ito, Akihiro; Washio, Yasuyoshi; Yamazaki, Akio; Noyama, Maki; Tokioka, Fumiaki; Arita, Machiko

    2017-01-01

    The new acronym, PES pathogens (Pseudomonas aeruginosa, Enterobacteriaceae extended-spectrum beta-lactamase-positive, and methicillin-resistant Staphylococcus aureus), was recently proposed to identify drug-resistant pathogens associated with community-acquired pneumonia. To evaluate the risk factors for antimicrobial-resistant pathogens in immunocompetent patients with pneumonia and to validate the role of PES pathogens. A retrospective analysis of a prospective observational study of immunocompetent patients with pneumonia between March 2009 and June 2015 was conducted. We clarified the risk factors for PES pathogens. Of the total 1559 patients, an etiological diagnosis was made in 705 (45.2%) patients. PES pathogens were identified in 51 (7.2%) patients, with 53 PES pathogens (P. aeruginosa, 34; ESBL-positive Enterobacteriaceae, 6; and MRSA, 13). Patients with PES pathogens had tendencies toward initial treatment failure, readmission within 30 days, and a prolonged hospital stay. Using multivariate analysis, female sex (adjusted odds ratio [AOR] 1.998, 95% confidence interval [CI] 1.047-3.810), admission within 90 days (AOR 2.827, 95% CI 1.250-6.397), poor performance status (AOR 2.380, 95% CI 1.047-5.413), and enteral feeding (AOR 5.808, 95% CI 1.813-18.613) were independent risk factors for infection with PES pathogens. The area under the receiver operating characteristics curve for the risk factors was 0.66 (95% CI 0.577-0.744). We believe the definition of PES pathogens is an appropriate description of drug-resistant pathogens associated with pneumonia in immunocompetent patients. The frequency of PES pathogens is quite low. However, recognition is critical because they can cause refractory pneumonia and different antimicrobial treatment is required. Copyright © 2016 The Author(s). Published by Elsevier Ltd.. All rights reserved.

  5. Functional Mechanism(s) of the Inhibition of Disease Progression by Combination Treatment with Fingolimod Plus Pathogenic Antigen in a Glucose-6-phosphate Isomerase Peptide-Induced Arthritis Mouse Model.

    Science.gov (United States)

    Yoshida, Yuya; Mikami, Norihisa; Matsushima, Yuki; Otani, Fumiya; Miyawaki, Mai; Takatsuji, Miku; Banno, Rie; Tsuji, Takumi; Fujita, Tetsuro; Tsujikawa, Kazutake; Kohno, Takeyuki

    2015-01-01

    We previously reported that combination treatment with fingolimod (FTY720) plus antigenic peptide of glucose-6-phosphate isomerase (residues 325-339) (GPI325-339) from the onset of symptoms significantly inhibited disease progression in a mouse model of GPI325-339-induced arthritis. In this study, we investigated the mechanism(s) involved. The model mice were treated from arthritis onset with FTY720 alone, GPI325-339 alone, or the combination of FTY720 plus GPI325-339. At the end of treatment, inguinal lymph nodes (LNs) were excised and examined histologically and in flow cytometry. Levels of apoptotic cells, programmed death-1-expressing CD4(+)forkhead box P3(-) nonregulatory T cells (non-Tregs), and cytotoxic T-lymphocyte antigen 4-expressing non-Tregs in inguinal LNs were markedly increased in the combination treatment group mice. Regulatory T cells (Tregs) were also increased. These results indicate that combination treatment with FTY720 plus GPI325-339 inhibits the progression of arthritis by inducing clonal deletion and anergy of pathogenic T cells and also by immune suppression via Tregs.

  6. Flexible thin-layer dielectric barrier discharge plasma treatment of pork butt and beef loin: effects on pathogen inactivation and meat-quality attributes.

    Science.gov (United States)

    Jayasena, Dinesh D; Kim, Hyun Joo; Yong, Hae In; Park, Sanghoo; Kim, Kijung; Choe, Wonho; Jo, Cheorun

    2015-04-01

    The effects of a flexible thin-layer dielectric barrier discharge (DBD) plasma system using a sealed package on microbial inactivation and quality attributes of fresh pork and beef were tested. Following a 10-min treatment, the microbial-load reductions of Listeria monocytogenes, Escherichia coli O157:H7, and Salmonella Typhimurium were 2.04, 2.54, and 2.68 Log CFU/g in pork-butt samples and 1.90, 2.57, and 2.58 Log CFU/g in beef-loin samples, respectively. Colorimetric analysis showed that DBD-plasma treatment did not significantly affect L* values (lightness) of pork and beef samples, but lowered a* values (redness) significantly after 5- and 7.5-min exposures. The plasma treatment significantly influenced lipid oxidation only after a 10-min exposure. The texture of both types of meat was unaffected by plasma treatment. All sensory parameters of treated and non-treated samples were comparable except for taste, which was negatively influenced by the plasma treatment (P quality might be prevented by the use of hurdle technology. Copyright © 2014 Elsevier Ltd. All rights reserved.

  7. Laser inactivation of pathogenic viruses in water

    Science.gov (United States)

    Grishkanich, Alexander; Zhevlakov, Alexander; Kascheev, Sergey; Sidorov, Igor; Ruzankina, Julia; Yakovlev, Alexey; Mak, Andrey

    2016-03-01

    Currently there is a situation that makes it difficult to provide the population with quality drinking water for the sanitary-hygienic requirements. One of the urgent problems is the need for water disinfection. Since the emergence of microorganisms that are pathogens transmitted through water such as typhoid, cholera, etc. requires constant cleansing of waters against pathogenic bacteria. In the water treatment process is destroyed up to 98% of germs, but among the remaining can be pathogenic viruses, the destruction of which requires special handling. As a result, the conducted research the following methods have been proposed for combating harmful microorganisms: sterilization of water by laser radiation and using a UV lamp.

  8. Nitrogen patterns in subsurface waters of the Yzeron stream: effect of combined sewer overflows and subsurface-surface water mixing.

    Science.gov (United States)

    Aucour, A M; Bariac, T; Breil, P; Namour, P; Schmitt, L; Gnouma, R; Zuddas, P

    2013-01-01

    Urbanization subjects streams to increased nitrogen loads. Therefore studying nitrogen forms at the interface between urban stream and groundwater is important for water resource management. In this study we report results on water δ(18)O and nitrogen forms in subsurface waters of a stream (Yzeron, France). The sites studied were located upstream and downstream of combined sewer overflows (CSO) in a rural area and a periurban area, respectively. Water δ(18)O allowed us to follow the mixing of subsurface water with surface water. Dissolved organic nitrogen and organic carbon of fine sediment increased by 20-30% between rural and periurban subsurface waters in the cold season, under high flow. The highest nitrate levels were observed in rural subsurface waters in the cold season. The lowest nitrate levels were found in periurban subsurface waters in the warm season, under low flow. They corresponded to slow exchange of subsurface waters with channel water. Thus reduced exchange between surface and subsurface waters and organic-matter-rich input seemed to favor nitrate reduction in the downstream, periurban, subsurface waters impacted by CSO.

  9. Food-borne pathogens

    International Nuclear Information System (INIS)

    Niemand, J.G.

    1985-01-01

    The Salmonella scare reinforced the importance of never taking chances when it comes to controlling pathogens. The issue has been resolved by radurisation. The article deals with the various pathogens that can effect food and argues the case for radurisation in dealing with them. It also looks at some of the other food products that can be treated using this process

  10. Potatoes, pathogens and pests

    NARCIS (Netherlands)

    Lazebnik, Jenny

    2017-01-01

    Currently, fungicides are necessary to protect potato crops against late blight, Phytophthora infestans, one of the world’s most damaging crop pathogens. The introgression of plant resistance genes from wild potato species targeted specifically to the late blight pathogen into

  11. Neuroepigenetic regulation of pathogenic memories

    Directory of Open Access Journals (Sweden)

    Stephanie E. Sillivan

    2015-01-01

    Full Text Available Our unique collection of memories determines our individuality and shapes our future interactions with the world. Remarkable advances into the neurobiological basis of memory have identified key epigenetic mechanisms that support the stability of memory. Various forms of epigenetic regulation at the levels of DNA methylation, histone modification, and noncoding RNAs can modulate transcriptional and translational events required for memory processes. By changing the cellular profile in the brain’s emotional, reward, and memory circuits, these epigenetic modifications have also been linked to perseverant, pathogenic memories. In this review, we will delve into the relevance of epigenetic dysregulation to pathogenic memory mechanisms by focusing on 2 neuropsychiatric disorders perpetuated by aberrant memory associations: substance use disorder and post-traumatic stress disorder. As our understanding improves, neuroepigenetic mechanisms may someday be harnessed to develop novel therapeutic targets for the treatment of these chronic, relapsing disorders.

  12. Incidence of Bacterial Pathogens following Biomechanical ...

    African Journals Online (AJOL)

    A correlation exists between endodontic microflora in pulpal disease and endodontic treatment failure. This study presents data on the recoverable bacterial pathogens following biomechanical treatment of infected root canals. Standard endodontic procedure were used to access tooth pulp cavity, processed and fluid ...

  13. Advanced core-analyses for subsurface characterization

    Science.gov (United States)

    Pini, R.

    2017-12-01

    The heterogeneity of geological formations varies over a wide range of length scales and represents a major challenge for predicting the movement of fluids in the subsurface. Although they are inherently limited in the accessible length-scale, laboratory measurements on reservoir core samples still represent the only way to make direct observations on key transport properties. Yet, properties derived on these samples are of limited use and should be regarded as sample-specific (or `pseudos'), if the presence of sub-core scale heterogeneities is not accounted for in data processing and interpretation. The advent of imaging technology has significantly reshaped the landscape of so-called Special Core Analysis (SCAL) by providing unprecedented insight on rock structure and processes down to the scale of a single pore throat (i.e. the scale at which all reservoir processes operate). Accordingly, improved laboratory workflows are needed that make use of such wealth of information by e.g., referring to the internal structure of the sample and in-situ observations, to obtain accurate parameterisation of both rock- and flow-properties that can be used to populate numerical models. We report here on the development of such workflow for the study of solute mixing and dispersion during single- and multi-phase flows in heterogeneous porous systems through a unique combination of two complementary imaging techniques, namely X-ray Computed Tomography (CT) and Positron Emission Tomography (PET). The experimental protocol is applied to both synthetic and natural porous media, and it integrates (i) macroscopic observations (tracer effluent curves), (ii) sub-core scale parameterisation of rock heterogeneities (e.g., porosity, permeability and capillary pressure), and direct 3D observation of (iii) fluid saturation distribution and (iv) the dynamic spreading of the solute plumes. Suitable mathematical models are applied to reproduce experimental observations, including both 1D and 3D

  14. Subsurface microbial ecology. Epi fluorescence direct counts; Ecologia microbica del sottosuolo: metodo di conta diretta in epifluorescenza

    Energy Technology Data Exchange (ETDEWEB)

    Barra Caracciolo, A.; Silvestri, C.; Creo, C.; Izzo, G. [ENEA, Centro Ricerche Casaccia, Rome (Italy). Dipt. Ambiente

    1998-07-01

    To the aim of recognize the importance of microorganisms in affecting or even determining the fate of xenobiotics in the subsurface environment evaluating bacteria concentration in a subsurface ecosystem, the report discusses a soil sample treatment method which has been developed for epi fluorescence direct counting with DAPI. [Italian] Lo studio discute un metodo di trattamento del campione per la conta diretta in epifluorescenza con un marcatore selettivo per il DNA, il DAPI, al fine di quantificare la concentrazione batterica del sottosuolo e studiare il ruolo dei microrganismi nella biodegradazione delle molecole esogene, ancora poco indagato.

  15. Scanning Tunneling Microscopy methods for spectroscopic imaging of subsurface interfaces

    Science.gov (United States)

    Bell, L. D.; Kaiser, W. J.

    1988-01-01

    A new method for spatially-resolved, spectroscopic investigation of subsurface interface structure has been developed. The method, Ballistic Electron Emission Microscopy (BEEM), is based on Scanning Tunneling Microscopy (STM) techniques. BEEM combines STM vacuum tunneling with unique ballistic electron spectroscopy capabilities. BEEM enables, for the first time, direct imaging of subsurface interface electronic properties with nanometer spatial resolution. STM topographic images of surface structure and BEEM images of subsurface properties are obtained simultaneously. BEEM capabilities are demonstrated by investigation of important metal-semiconductor interfaces.

  16. Performance Indicators for Uranium Bioremediation in the Subsurface: Basis and Assessment

    Energy Technology Data Exchange (ETDEWEB)

    Long, Philip E. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Yabusaki, Steven B. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States)

    2006-12-29

    The purpose of this letter report is to identify performance indicators for in situ engineered bioremediation of subsurface uranium (U) contamination. This report focuses on in situ treatment of groundwater by biostimulation of extant in situ microbial populations (see http://128.3.7.51/NABIR/generalinfo/primers_guides/03_NABIR_primer.pdf for background information on bioremediation of metals and radionuclides). The treatment process involves amendment of the subsurface with an electron donor such as acetate, lactate, ethanol or other organic compound such that in situ microorganisms mediate the reduction of U(VI) to U(IV). U(VI) precipitates as uraninite or other insoluble U phase. Uranium is thus immobilized in place by such processes and is subject to reoxidation that may remobilize the reduced uranium. Related processes include augmenting the extant subsurface microbial populations, addition of electron acceptors, and introduction of chemically reducing materials such as zero-valent Fe. While metrics for such processes may be similar to those for in situ biostimulation, these related processes are not directly in the scope of this letter report.

  17. Physiologically anaerobic microorganisms of the deep subsurface

    International Nuclear Information System (INIS)

    Stevens, S.E. Jr.; Chung, K.T.

    1993-10-01

    Anaerobic bacteria were isolated from deep subsurface sediment samples taken at study sites in Idaho (INEL) and Washington (HR) by culturing on dilute and concentrated medium. Morphologically distinct colonies were purified, and their responses to 21 selected physiological tests were determined. Although the number of isolates was small (18 INEL, 27 HR) some general patterns could be determined. Most strains could utilize all the carbon sources, however the glycerol and melizitose utilization was positive for 50% or less of the HR isolates. Catalase activity (27.78% at INEL, 74.07% at HR) and tryptophan metabolism (11.12% at INEL, 40.74% at HR) were significantly different between the two study sites. MPN and viable counts indicate that sediments near the water table yield the greatest numbers of anaerobes. Deeper sediments also appear to be more selective with the greatest number of viable counts on low-nutrient mediums. Likewise, only strictly obligate anaerobes were found in the deepest sediment samples. Selective media indicated the presence of methanogens, acetogens, and sulfate reducers at only the HR site

  18. Subsurface flow in lowland river gravel bars

    Science.gov (United States)

    Bray, E. N.; Dunne, T.

    2017-09-01

    Geomorphic and hydraulic processes, which form gravel bars in large lowland rivers, have distinctive characteristics that control the magnitude and spatial patterns of infiltration and exfiltration between rivers and their immediate subsurface environments. We present a bedform-infiltration relation together with a set of field measurements along two reaches of the San Joaquin River, CA to illustrate the conditions required for infiltration and exfiltration of flow between a stream and its undulating bed, and a numerical model to investigate the factors that affect paths and residence times of flow through barforms at different discharges. It is shown that asymmetry of bar morphology is a first-order control on the extent and location of infiltration, which would otherwise produce equal areas of infiltration and exfiltration under the assumption of sinusoidal bedforms. Hydraulic conductivity varies by orders of magnitude due to fine sediment accumulation and downstream coarsening related to the process of bar evolution. This systematic variability not only controls the magnitude of infiltration, but also the residence time of flow through the bed. The lowest hydraulic conductivity along the reach occurred where the difference between the topographic gradient and the water-surface gradient is at a maximum and thus where infiltration would be greatest into a homogeneous bar, indicating the importance of managing sand supply to maintain the ventilation and flow through salmon spawning riffles. Numerical simulations corroborate our interpretation that infiltration patterns and rates are controlled by distinctive features of bar morphology.

  19. Starvation-survival of subsurface bacteria

    International Nuclear Information System (INIS)

    Magill, N.G.

    1988-01-01

    The ability of four subsurface isolates to survive starvation was examined and the results were compared to survival curves obtained for Escherichia coli B and Serratia marcescens. To examine the starvation-survival phenomenon further, several experimental parameters including nutritional history, initial cell density, growth phase, temperature of growth and starvation, and aeration. Nutritional history, initial cell density, and growth phases of the cells had some effect on the ability of these bacteria to survive whereas temperature and limited aeration had no effect under the conditions tested. No conditions were found where E. coli B or Serratia marcescens died rapidly or where less than 10% of the original cell number of viable cells remained. Because the apparent survival of these bacteria may be due to cryptic growth, cross-feeding experiments with 14 C-labeled cells and unlabeled cells were carried out with E. coli B and Pseudomonas Lula V. Leaked extracellular 14 C-compounds were not used for growth or maintenance energy, and were not taken up by either bacterium. Cryptic growth did not occur; the cells were truly starving under the experimental conditions used

  20. The DOE Subsurface Microbial Culture Collection (SMCC)

    Energy Technology Data Exchange (ETDEWEB)

    Balkwill, David L.

    2006-05-23

    The primary activities associated with maintenance of the Subsurface Microbial Culture Collection (SMCC) were designed to ensure that the collection served as a valuable resource to DOE-funded and other scientists, especially DOE-funded scientists associated with the NABIR Program. These activities were carried out throughout the period covered by this report and in-cluded: (1) assistance in the selection of cultures for research, (2) distribution of cultures and/or data on request, (3) incorporation of newly isolated microbial strains, (4) preservation of newly isolated strains, (5) partial characterization of newly isolated strains, (6) development and main-tenance of representative subsets of cultures, (6) screening of SMCC strains for specific charac-teristics, (7) phylogenetic characterization of SMCC strains, (8) development and maintenance of a SMCC website, (9) maintenance of the SMCC databases, (10) archiving of SMCC records, and (11) quality assurance/quality control (QA/QC) activities. We describe in the Final Technical Report our accomplishments related to these activities during the period covered by this report.

  1. A novel approach for differentiating pathogenic and non-pathogenic Leptospira based on molecular fingerprinting.

    Science.gov (United States)

    Xiao, Di; Zhang, Cuicai; Zhang, Huifang; Li, Xiuwen; Jiang, Xiugao; Zhang, Jianzhong

    2015-04-24

    Leptospirosis is a worldwide, deadly zoonotic disease. Pathogenic Leptospira causes leptospirosis. The rapid and accurate identification of pathogenic and non-pathogenic Leptospira strains is essential for appropriate therapeutic management and timely intervention for infection control. The molecular fingerprint is a simple and rapid alternative tool for microorganisms identification, which is based on matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS). In this study, molecular fingerprint was performed to identify pathogenic strains of Leptospira. Phylogenetic analysis based on 16S rRNA gene sequences was used as the reference method. In addition, a label-free technique was used to reveal the different proteins of pathogenic or non-pathogenic Leptospira. A reference database was constructed using 30 Leptospira strains, including 16 pathogenic strains and 14 non-pathogenic strains. Two super reference spectra that were associated with pathogenicity were established. Overall, 33 Leptospira strains were used for validation, and 32 of 33 Leptospira strains could be identified on the species level and all the 33 could be classified as pathogenic or non-pathogenic. The super reference spectra and the major spectra projection (MSP) dendrogram correctly categorized the Leptospira strains into pathogenic and non-pathogenic groups, which was consistent with the 16S rRNA reference methods. Between the pathogenic and non-pathogenic strains, 108 proteins were differentially expressed. molecular fingerprint is an alternative to conventional molecular identification and can rapidly distinguish between pathogenic and non-pathogenic Leptospira strains. Therefore, molecular fingerprint may play an important role in the clinical diagnosis, treatment, surveillance, and tracking of epidemic outbreaks of leptospirosis. Leptospirosis is a worldwide zoonosis that is caused by spirochetes of the genus Leptospira. Leptospirosis is a serious zoonotic

  2. Re-Defining the Subsurface Biosphere: Characterization of Fungal Populations from Energy Limited Deep Marine Subsurface Sediments

    Science.gov (United States)

    Reese, B. K.; Ariza, M.; St. Peter, C.; Hoffman, C.; Edwards, K. J.; Mills, H. J.

    2012-12-01

    The detection and characterization of metabolically active fungal populations within the deep marine subsurface will alter current ecosystem models that are limited to bacterial and archaeal populations. Although marine fungi have been studied for over fifty years, a detailed description of fungal populations within the deep subsurface is lacking. Fungi possess metabolic pathways capable of utilizing previously considered non-bioavailable energy reserves. Therefore, metabolically active fungi would occupy a unique niche within subsurface ecosystems, with the potential to provide an organic carbon source for heterotrophic prokaryotic populations not currently being considered in subsurface energy budgets. Sediments from the South Pacific Gyre subsurface, one of the most energy-limited environments on Earth, were collected during the Integrated Ocean Drilling Program (IODP) Expedition 329. Anaerobic and aerobic sediment slurry cultures using fresh sediment began directly following the completion of the Expedition (December 2010). From these cultures, multiple fungal lineages have been isolated on several media types that vary in carbon concentrations. Physical growth parameters of these subsurface fungal isolates were determined and compared to previously characterized lineages. Additionally, the overall diversity of metabolically active and dormant fungal populations was determined using high throughput sequencing of nucleic acids extracted from in situ cryopreserved South Pacific Gyre sediments. This project provides a robust step in determining the importance and impact of fungal populations within the marine subsurface biosphere.

  3. Indicators for waterborne pathogens

    National Research Council Canada - National Science Library

    Committee on Indicators for Waterborne Pathogens; Board on Life Sciences; Water Science and Technology Board; Division on Earth and Life Studies; National Research Council; National Academy of Sciences

    2004-01-01

    ... not practical or feasible to monitor for the complete spectrum of microorganisms that may occur in water, and many known pathogens are difficult to detect directly and reliably in water samples.Â...

  4. Evolution of microbial pathogens

    National Research Council Canada - National Science Library

    DiRita, Victor J; Seifert, H. Steven

    2006-01-01

    ... A. Hogan vvi ■ CONTENTS 8. Evolution of Pathogens in Soil Rachel Muir and Man-Wah Tan / 131 9. Experimental Models of Symbiotic Host-Microbial Relationships: Understanding the Underpinnings of ...

  5. Host–Pathogen Interactions

    NARCIS (Netherlands)

    Smits, M.A.; Schokker, D.J.

    2011-01-01

    The outcome of an infection is determined by numerous interactions between hosts and pathogens occurring at many different biological levels, ranging from molecule to population. To develop new control strategies for infectious diseases in livestock species, appropriate methodologies are needed

  6. Microbial colonisation in diverse surface soil types in Surtsey and diversity analysis of its subsurface microbiota

    Science.gov (United States)

    Marteinsson, V.; Klonowski, A.; Reynisson, E.; Vannier, P.; Sigurdsson, B. D.; Ólafsson, M.

    2014-09-01

    Colonisation of life on Surtsey has been observed systematically since the formation of the island 50 years ago. Although the first colonisers were prokaryotes, such as bacteria and blue-green algae, most studies have been focusing on settlement of plants and animals but less on microbial succession. To explore microbial colonization in diverse soils and the influence of associate vegetation and birds on numbers of environmental bacteria, we collected 45 samples from different soils types on the surface of the island. Total viable bacterial counts were performed with plate count at 22, 30 and 37 °C for all soils samples and the amount of organic matter and nitrogen (N) was measured. Selected samples were also tested for coliforms, faecal coliforms aerobic and anaerobic bacteria. The deep subsurface biosphere was investigated by collecting liquid subsurface samples from a 182 m borehole with a special sampler. Diversity analysis of uncultivated biota in samples was performed by 16S rRNA gene sequences analysis and cultivation. Correlation was observed between N deficits and the number of microorganisms in surface soils samples. The lowest number of bacteria (1 × 104-1 × 105 g-1) was detected in almost pure pumice but the count was significant higher (1 × 106-1 × 109 g-1) in vegetated soil or pumice with bird droppings. The number of faecal bacteria correlated also to the total number of bacteria and type of soil. Bacteria belonging to Enterobacteriaceae were only detected in vegetated and samples containing bird droppings. The human pathogens Salmonella, Campylobacter and Listeria were not in any sample. Both thermophilic bacteria and archaea 16S rDNA sequences were found in the subsurface samples collected at 145 m and 172 m depth at 80 °C and 54 °C, respectively, but no growth was observed in enrichments. The microbiota sequences generally showed low affiliation to any known 16S rRNA gene sequences.

  7. Microbial colonization in diverse surface soil types in Surtsey and diversity analysis of its subsurface microbiota

    Science.gov (United States)

    Marteinsson, V.; Klonowski, A.; Reynisson, E.; Vannier, P.; Sigurdsson, B. D.; Ólafsson, M.

    2015-02-01

    Colonization of life on Surtsey has been observed systematically since the formation of the island 50 years ago. Although the first colonisers were prokaryotes, such as bacteria and blue-green algae, most studies have been focused on the settlement of plants and animals but less on microbial succession. To explore microbial colonization in diverse soils and the influence of associated vegetation and birds on numbers of environmental bacteria, we collected 45 samples from different soil types on the surface of the island. Total viable bacterial counts were performed with the plate count method at 22, 30 and 37 °C for all soil samples, and the amount of organic matter and nitrogen (N) was measured. Selected samples were also tested for coliforms, faecal coliforms and aerobic and anaerobic bacteria. The subsurface biosphere was investigated by collecting liquid subsurface samples from a 181 m borehole with a special sampler. Diversity analysis of uncultivated biota in samples was performed by 16S rRNA gene sequences analysis and cultivation. Correlation was observed between nutrient deficits and the number of microorganisms in surface soil samples. The lowest number of bacteria (1 × 104-1 × 105 cells g-1) was detected in almost pure pumice but the count was significantly higher (1 × 106-1 × 109 cells g-1) in vegetated soil or pumice with bird droppings. The number of faecal bacteria correlated also to the total number of bacteria and type of soil. Bacteria belonging to Enterobacteriaceae were only detected in vegetated samples and samples containing bird droppings. The human pathogens Salmonella, Campylobacter and Listeria were not in any sample. Both thermophilic bacteria and archaea 16S rDNA sequences were found in the subsurface samples collected at 145 and 172 m depth at 80 and 54 °C, respectively, but no growth was observed in enrichments. The microbiota sequences generally showed low affiliation to any known 16S rRNA gene sequences.

  8. Adenoid Reservoir for Pathogenic Biofilm Bacteria▿

    Science.gov (United States)

    Nistico, L.; Kreft, R.; Gieseke, A.; Coticchia, J. M.; Burrows, A.; Khampang, P.; Liu, Y.; Kerschner, J. E.; Post, J. C.; Lonergan, S.; Sampath, R.; Hu, F. Z.; Ehrlich, G. D.; Stoodley, P.; Hall-Stoodley, L.

    2011-01-01

    Biofilms of pathogenic bacteria are present on the middle ear mucosa of children with chronic otitis media (COM) and may contribute to the persistence of pathogens and the recalcitrance of COM to antibiotic treatment. Controlled studies indicate that adenoidectomy is effective in the treatment of COM, suggesting that the adenoids may act as a reservoir for COM pathogens. To investigate the bacterial community in the adenoid, samples were obtained from 35 children undergoing adenoidectomy for chronic OM or obstructive sleep apnea. We used a novel, culture-independent molecular diagnostic methodology, followed by confocal microscopy, to investigate the in situ distribution and organization of pathogens in the adenoids to determine whether pathogenic bacteria exhibited criteria characteristic of biofilms. The Ibis T5000 Universal Biosensor System was used to interrogate the extent of the microbial diversity within adenoid biopsy specimens. Using a suite of 16 broad-range bacterial primers, we demonstrated that adenoids from both diagnostic groups were colonized with polymicrobial biofilms. Haemophilus influenzae was present in more adenoids from the COM group (P = 0.005), but there was no significant difference between the two patient groups for Streptococcus pneumoniae or Staphylococcus aureus. Fluorescence in situ hybridization, lectin binding, and the use of antibodies specific for host epithelial cells demonstrated that pathogens were aggregated, surrounded by a carbohydrate matrix, and localized on and within the epithelial cell surface, which is consistent with criteria for bacterial biofilms. PMID:21307211

  9. The Effect of NIR Light and the Light-Activated Antimicrobial Agent on Wound Pathogenic Biofilms; Implication for Nonpharmacologic Chronic Wound Treatment

    DEFF Research Database (Denmark)

    Omar, Ghada Said Mohammed

    2015-01-01

    biofilms. Metoder / Methods Biofilms of Staphylococcus aureus and Pseudomonas aeruginosa were grown in a 96-well microtiter plate for 18-22 h. The study included 4 arms: (a) control; (b) 200 µg/mL Indocyanin green (ICG) kept in the dark, (c) NIR laser alone; (d) NIR laser combined with 200 µg/mL. ICG...... cells encased in biofilms, while a combination of both light and dye resulted in a 99.3% kill. Exposure of Staph. aureus biofilms to ICG in combination with NIR laser light or to the NIR light alone resulted in 99.9% and 99.7% reductions in the number of viable bacteria, respectively. Konklusioner...... / Conclusions NIR laser alone was superior to the combination of ICG and NIR light in killing P. aeruginosa biofilms. However the combination of NIR with ICG was more effective in disrupting Staph. aureus biofilms. Thus NIR light laser may be a promising nonpharmacologic treatment method for disrupting biofilms...

  10. Evaluating two irrigation controllers under subsurface drip irrigated tomato crop

    Energy Technology Data Exchange (ETDEWEB)

    Al-Ghobari, H.M.; Mohammad, F.S.; El Marazky, M.S.A.

    2016-07-01

    Smart systems could be used to improve irrigation scheduling and save water under Saudi Arabia’s present water crisis scenario. This study investigated two types of evapotranspiration-based smart irrigation controllers, SmartLine and Hunter Pro-C2, as promising tools for scheduling irrigation and quantifying plants’ water requirements to achieve water savings. The effectiveness of these technologies in reducing the amount of irrigation water was compared with the conventional irrigation scheduling method as a control treatment. The two smart irrigation sensors were used for subsurface irrigation of a tomato crop (cv. Nema) in an arid region. The results showed that the smart controllers significantly reduced the amount of applied water and increased the crop yield. In general, the Hunter Pro-C2 system saved the highest amount of water and produced the highest crop yield, resulting in the highest water irrigation efficiency compared with the SmartLine controller and the traditional irrigation schedule. It can be concluded that the application of advanced scheduling irrigation techniques such as the Hunter controller under arid conditions can realise economic benefits by saving large amounts of irrigation water.

  11. Evaluating two irrigation controllers under subsurface drip irrigated tomato crop

    International Nuclear Information System (INIS)

    Al-Ghobari, H.M.; Mohammad, F.S.; El Marazky, M.S.A.

    2016-01-01

    Smart systems could be used to improve irrigation scheduling and save water under Saudi Arabia’s present water crisis scenario. This study investigated two types of evapotranspiration-based smart irrigation controllers, SmartLine and Hunter Pro-C2, as promising tools for scheduling irrigation and quantifying plants’ water requirements to achieve water savings. The effectiveness of these technologies in reducing the amount of irrigation water was compared with the conventional irrigation scheduling method as a control treatment. The two smart irrigation sensors were used for subsurface irrigation of a tomato crop (cv. Nema) in an arid region. The results showed that the smart controllers significantly reduced the amount of applied water and increased the crop yield. In general, the Hunter Pro-C2 system saved the highest amount of water and produced the highest crop yield, resulting in the highest water irrigation efficiency compared with the SmartLine controller and the traditional irrigation schedule. It can be concluded that the application of advanced scheduling irrigation techniques such as the Hunter controller under arid conditions can realise economic benefits by saving large amounts of irrigation water.

  12. Sub-Surface Oil Monitoring Cruise (GU1002, EK60)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Objectives were to evaluate ability of acoustic echosounder measurements to detect and localize a sub-surface plume of oil or related hydrocarbons released from the...

  13. Multi-Robot Systems for Subsurface Planetary Exploration Project

    Data.gov (United States)

    National Aeronautics and Space Administration — The proposed innovation is a heterogeneous multi-robot team developed as a platform for effective subsurface planetary exploration. State-of-art robotic exploration...

  14. Pollutant removal in subsurface wastewater infiltration systems with ...

    African Journals Online (AJOL)

    Pollutant removal in subsurface wastewater infiltration systems with/without intermittent aeration under different organic pollutant loadings. Hexin Fei, Deli Tong, Jing Pan, Yang Zhang, Linli Huang, Fan Cheng, Fanping Zheng ...

  15. Active microbial biofilms in deep poor porous continental subsurface rocks.

    Science.gov (United States)

    Escudero, Cristina; Vera, Mario; Oggerin, Monike; Amils, Ricardo

    2018-01-24

    Deep continental subsurface is defined as oligotrophic environments where microorganisms present a very low metabolic rate. To date, due to the energetic cost of production and maintenance of biofilms, their existence has not been considered in poor porous subsurface rocks. We applied fluorescence in situ hybridization techniques and confocal laser scanning microscopy in samples from a continental deep drilling project to analyze the prokaryotic diversity and distribution and the possible existence of biofilms. Our results show the existence of natural microbial biofilms at all checked depths of the Iberian Pyrite Belt (IPB) subsurface and the co-occurrence of bacteria and archaea in this environment. This observation suggests that multi-species biofilms may be a common and widespread lifestyle in subsurface environments.

  16. SUBSURFACE VOLATIZATION AND VENTILATION SYSTEM (SVVS) - INNOVATIVE TECHNOLOGY REPORT

    Science.gov (United States)

    This report summarizes the findings associated with a Demonstration Test of Environmental Improvement Technologies’ (EIT) Subsurface Volatilization and Ventilation System (SVVS) process. The technology was evaluated under the EPA Superfund Innovative Technology Evaluation (SITE) ...

  17. SITE TECHNOLOGY CAPSULE: SUBSURFACE VOLATILIZATION AND VENTILATION SYSTEM (SVVS)

    Science.gov (United States)

    The Subsurface Volatilization and Ventilation System is an integrated technology used for attacking all phases of volatile organic compound (VOC) contamination in soil and groundwater. The SVVS technology promotes insitu remediation of soil and groundwater contaminated with or-ga...

  18. A Retrospective Evaluation of Subsurface Monopolar Radiofrequency for Lifting of the Face, Neck, and Jawline.

    Science.gov (United States)

    Dendle, Julia; Wu, Douglas C; Fabi, Sabrina G; Melo, Diana; Goldman, Mitchel P

    2016-11-01

    Subsurface monopolar radiofrequency (SMRF) has emerged as a new method for reducing skin laxity via the controlled delivery of thermal energy below the skin using a radiofrequency probe. To evaluate the overall efficacy of the treatment and satisfaction ratings of subjects who underwent a single SMRF treatment to the face, neck, or jawline (or some combination). A retrospective, single-center study was conducted in which data were obtained via subject follow-ups at 90 and 180 days posttreatment. A total of 35 subjects, 6 men and 29 women, underwent a single SMRF treatment. Overall, 77% of subjects reported improvement, and 64% reported satisfaction with the treatment site at Day 180 posttreatment. Subsurface monopolar radiofrequency represents an effective modality to achieve skin tightening of the face, neck, and jawline. The data suggest that there is an energy delivery threshold, above which a higher percentage of subjects report satisfaction. Analysis of treatments parameters suggests an optimal treatment time and tissue temperature that should be achieved to maximize results.

  19. Emerging pathogens: Dynamics, mutation and drug resistance

    Energy Technology Data Exchange (ETDEWEB)

    Perelson, A.S.; Goldstein, B.; Korber, B.T. [and others

    1997-10-01

    This is the final report of a one-year, Laboratory Directed Research and Development (LDRD) project at Los Alamos National Laboratory (LANL). The objectives of this project were to develop models of the spread of pathogens, such as HIV-1 and influenza, in humans, and then to use the models to address the possibility of designing appropriate drug therapies that may limit the ability of the pathogen to escape treatment by mutating into a drug resistant form. We have developed a model of drug-resistance to amantidine and rimantadine, the two major antiviral drugs used to treat influenza, and have used the model to suggest treatment strategies during an epidemic.

  20. DWH MC 252: Subsurface Oil Transport

    Science.gov (United States)

    Beegle-Krause, C. J.; Boyer, T.; Murray, D.

    2010-12-01

    , previous research and modeling were combined to tell the story of the DWH MC 252 from the subsurface perspective. The Comprehensive Deepwater Oil and Gas model (CDOG, Yapa and Xie, 2005), and the General NOAA Operational Modeling Environment (GNOME, Beegle-Krause, 1999) were used with the NOAA Gulf of Mexico Model nowcast/forecast model to understand the 3D evolution of the subsurface spill. Model/observational comparisons are favorable, though limitations of the available models are apparent. Historical perspective on Thunder Horse (a deepwater well incident that was a dress-rehearsal for the DWH MC 252, Beegle-Krause and Walton, 2004), transitioning models from research to operations, and research needs will also be discussed.

  1. COST EFFECTIVE AND HIGH RESOLUTION SUBSURFACE CHARACTERIZATION USING HYDRAULIC TOMOGRAPHY

    Science.gov (United States)

    2017-08-01

    see that Approaches 1 and 2 are comparable in terms of costs if the equipment costs for hydraulic tomography are not accounted for. Equipment costs ...FINAL REPORT Cost -Effective and High-Resolution Subsurface Characterization Using Hydraulic Tomography ESTCP Project ER-201212 AUGUST...TITLE AND SUBTITLE 5a. CONTRACT NUMBER W912HQ-12-C-0024 COST -EFFECTIVE AND HIGH-RESOLUTION SUBSURFACE CHARACTERIZATION USING HYDRAULIC TOMOGRAPHY

  2. Method of solution mining subsurface orebodies to reduce restoration activities

    International Nuclear Information System (INIS)

    Hartman, G.J.

    1984-01-01

    A method of solution mining is claimed wherein a lixiviant containing both leaching and oxidizing agents is injected into the subsurface orebody. The composition of the lixiviant is changed by reducing the level of oxidizing agent to zero so that soluble species continue to be removed from the subsurface environment. This reduces the uranium level of the ground water aquifer after termination of the lixiviant injection

  3. Method of solution mining subsurface orebodies to reduce restoration activities

    Energy Technology Data Exchange (ETDEWEB)

    Hartman, G.J.

    1984-01-24

    A method of solution mining is claimed wherein a lixiviant containing both leaching and oxidizing agents is injected into the subsurface orebody. The composition of the lixiviant is changed by reducing the level of oxidizing agent to zero so that soluble species continue to be removed from the subsurface environment. This reduces the uranium level of the ground water aquifer after termination of the lixiviant injection.

  4. Subsurface degradation of resin-based composites.

    Science.gov (United States)

    Bagheri, Rafat; Tyas, Martin J; Burrow, Michael F

    2007-08-01

    To determine the depth of a degraded subsurface layer produced in dental composites as a result of exposure to lactic acid or NaOH, by observing the penetration of AgNO(3) solution. Specimens were prepared from four resin composites; Point 4 (Kerr), Premise (Kerr), Filtek Supreme (3M/ESPE), Ceram X (Dentsply), and two polyacid-modified resin composites; Dyract (Dentsply) and F2000 (3M/ESPE). The specimens were immersed in distilled water for 1 week, transferred to one of three aqueous media at 60 degrees C for 2 weeks; distilled water, 0.01mol/L lactic acid or 0.1N NaOH, washed and immersed in 50% (w/w) aqueous silver nitrate for 10 days at 60 degrees C and placed in a photodeveloper solution. After reduction of the silver, specimens were embedded in epoxy resin, sectioned and polished, coated with carbon, and examined by backscattered mode scanning electron microscopy. The depth of silver penetration into the degraded area was measured from the SEM micrographs. Energy dispersive analysis X-ray (EDAX) was used to confirm the presence of silver. NaOH produced the greatest depth of degradation and lactic acid the least. Premise showed the greatest depth of silver penetration when subjected to NaOH, and Filtek Supreme the second with peeling of the surface and cracking, whereas F2000 and Point 4 showed the least in NaOH and lactic acid. ANOVA and Tukey's test showed that the depth of silver penetration was material and solution dependent, and the differences were significant for most of the materials (P<0.05).

  5. Swine manure post-treatment technologies for pathogenic organism inactivation Tecnologias de pós-tratamento de dejetos suínos para inativar organismos patogênicos

    Directory of Open Access Journals (Sweden)

    Patrícia Bilotta

    2013-04-01

    Full Text Available Swine manure agricultural use is a common practice in Brazil. Their physic-chemical characteristics favor its use as biofertilizer, but the presence of pathogens may become a risk to human health. This research presents a qualitative study of the main alternatives of pig manure disinfection, analyzing efficiency, advantages and limitations of each procedure. The disinfection studies reported in literature are based on the following treatments: alkaline, thermal, biological, chemical, and physical. The greater efficiencies are in thermal treatment (> 4 log: 60 °C, chemical treatment (3 to 4 log: 30mg Cl- L-1; 3 to 4 log: 40 mg O3 L-1 and physical treatment (3 a 4 log: 220 mJ UV radiation cm-2. The biological treatment (anaerobiosis also promotes the pathogen reduction of swine manure, however with lower efficiency (1 to 2 log. The selection of the treatment should consider: implementation and operation cost, necessity of preliminary treatment, efficiency obtained and destination of the treated manure (agricultural use, water reuse. Brazilian regulation does not have specific guidelines for the microbiological quality of animal production effluents that is very important to be considered due to confined animal feeding operation transformation in the last years in the country.O uso agrícola de dejetos suínos é uma prática comum no Brasil. Suas características físico-químicas favorecem seu aproveitamento como biofertilizante, porém a presença de patógenos pode representar um risco à saúde humana. Este trabalho apresenta um estudo qualitativo das principais alternativas de desinfecção de dejetos suínos, analisando eficiência, vantagens e limitações de cada procedimento. Os estudos de desinfecção reportados na literatura são baseados nos seguintes tratamentos: alcalino, térmico, biológico, químico e físico. As maiores eficiências de redução de patógenos estão no tratamento térmico (>4 log: 60 °C, tratamento químico (3

  6. Tools and concepts for sustainable management of the subsurface in the Netherlands: a technical investigation

    NARCIS (Netherlands)

    Griffioen, J.J.; Oomes, J.; Barends, F.; Breunese, J.; Bruining, H.; Olsthoorn, T.; Stams, F.; Stoel, A. van der; Wensem, J. van

    2013-01-01

    Increasing use of the subsurface leads to a need for modernisation of policies on sustainable use of the subsurface. We have analysed a series of case studies about exploitation of subsurface resources including spatial use of the subsurface, on social relevance, environmental impact, social and

  7. Enhancing Groundwater Governance by Making the Linkage with Multiple Uses of the Subsurface Space and Other Subsurface Resources

    Directory of Open Access Journals (Sweden)

    Jac van der Gun

    2016-05-01

    Full Text Available One of the aspects highlighted in the Framework for Action and other key documents produced by the Groundwater Governance Project (funded by GEF and implemented by UNESCO, FAO, World Bank and IAH is the interdependence between groundwater and human activities related to other physical components of the real world. Consequently, it is important in groundwater governance to make essential linkages with other components of the water cycle (IWRM, with sanitation and wastewater management, with land use and land use practices, with energy and with the uses of subsurface space and other subsurface resources. This paper presents an overall description of the multiple uses of the subsurface space and of the exploitation and management of subsurface resources. It attempts to give an impression of intensities and trends in use and exploitation, of the possible interactions and of current and potential efforts to control negative impacts of such interactions. It concludes by briefly summarizing in three simple steps how to improve groundwater governance by making appropriate linkages with uses of the subsurface space and subsurface resources.

  8. Intercellular Genomics of Subsurface Microbial Colonies

    Energy Technology Data Exchange (ETDEWEB)

    Ortoleva, Peter [Indiana Univ., Bloomington, IN (United States); Tuncay, Kagan [Indiana Univ., Bloomington, IN (United States); Gannon, Dennis [Indiana Univ., Bloomington, IN (United States); Meile, Christof [Indiana Univ., Bloomington, IN (United States)

    2007-02-14

    This report summarizes progress in the second year of this project. The objective is to develop methods and software to predict the spatial configuration, properties and temporal evolution of microbial colonies in the subsurface. To accomplish this, we integrate models of intracellular processes, cell-host medium exchange and reaction-transport dynamics on the colony scale. At the conclusion of the project, we aim to have the foundations of a predictive mathematical model and software that captures the three scales of these systems – the intracellular, pore, and colony wide spatial scales. In the second year of the project, we refined our transcriptional regulatory network discovery (TRND) approach that utilizes gene expression data along with phylogenic similarity and gene ontology analyses and applied it successfully to E.coli, human B cells, and Geobacter sulfurreducens. We have developed a new Web interface, GeoGen, which is tailored to the reconstruction of microbial TRNs and solely focuses on Geobacter as one of DOE’s high priority microbes. Our developments are designed such that the frameworks for the TRND and GeoGen can readily be used for other microbes of interest to the DOE. In the context of modeling a single bacterium, we are actively pursuing both steady-state and kinetic approaches. The steady-state approach is based on a flux balance that uses maximizing biomass growth rate as its objective, subjected to various biochemical constraints, for the optimal values of reaction rates and uptake/release of metabolites. For the kinetic approach, we use Karyote, a rigorous cell model developed by us for an earlier DOE grant and the DARPA BioSPICE Project. We are also investigating the interplay between bacterial colonies and environment at both pore and macroscopic scales. The pore scale models use detailed representations for realistic porous media accounting for the distribution of grain size whereas the macroscopic models employ the Darcy-type flow

  9. A subsurface Fe-silicate weathering microbiome

    Science.gov (United States)

    Napieralski, S. A.; Buss, H. L.; Roden, E. E.

    2017-12-01

    Traditional models of microbially mediated weathering of primary Fe-bearing minerals often invoke organic ligands (e.g. siderophores) used for nutrient acquisition. However, it is well known that the oxidation of Fe(II) governs the overall rate of Fe-silicate mineral dissolution. Recent work has demonstrated the ability of lithtrophic iron oxidizing bacteria (FeOB) to grow via the oxidation of structural Fe(II) in biotite as a source of metabolic energy with evidence suggesting a direct enzymatic attack on the mineral surface. This process necessitates the involvement of dedicated outer membrane proteins that interact with insoluble mineral phases in a process known as extracellular electron transfer (EET). To investigate the potential role FeOB in a terrestrial subsurface weathering system, samples were obtained from the bedrock-saprolite interface (785 cm depth) within the Rio Icacos Watershed of the Luquillo Mountains in Puerto Rico. Prior geochemical evidence suggests the flux of Fe(II) from the weathering bedrock supports a robust lithotrophic microbial community at depth. Current work confirms the activity of microorganism in situ, with a marked increase in ATP near the bedrock-saprolite interface. Regolith recovered from the interface was used as inoculum to establish enrichment cultures with powderized Fe(II)-bearing minerals serving as the sole energy source. Monitoring of the Fe(II)/Fe(total) ratio and ATP generation suggests growth of microorganisms coupled to the oxidation of mineral bound Fe(II). Analysis of 16S rRNA gene and shotgun metagenomic libraries from in situ and enrichment culture samples lends further support to FeOB involvement in the weathering process. Multiple metagenomic bins related to known FeOB, including Betaproteobacteria genera, contain homologs to model EET systems, including Cyc2 and MtoAB. Our approach combining geochemistry and metagenomics with ongoing microbiological and genomic characterization of novel isolates obtained

  10. Geophysical subsurface imaging and interface identification.

    Energy Technology Data Exchange (ETDEWEB)

    Pendley, Kevin; Bochev, Pavel Blagoveston; Day, David Minot; Robinson, Allen Conrad; Weiss, Chester Joseph

    2005-09-01

    Electromagnetic induction is a classic geophysical exploration method designed for subsurface characterization--in particular, sensing the presence of geologic heterogeneities and fluids such as groundwater and hydrocarbons. Several approaches to the computational problems associated with predicting and interpreting electromagnetic phenomena in and around the earth are addressed herein. Publications resulting from the project include [31]. To obtain accurate and physically meaningful numerical simulations of natural phenomena, computational algorithms should operate in discrete settings that reflect the structure of governing mathematical models. In section 2, the extension of algebraic multigrid methods for the time domain eddy current equations to the frequency domain problem is discussed. Software was developed and is available in Trilinos ML package. In section 3 we consider finite element approximations of De Rham's complex. We describe how to develop a family of finite element spaces that forms an exact sequence on hexahedral grids. The ensuing family of non-affine finite elements is called a van Welij complex, after the work [37] of van Welij who first proposed a general method for developing tangentially and normally continuous vector fields on hexahedral elements. The use of this complex is illustrated for the eddy current equations and a conservation law problem. Software was developed and is available in the Ptenos finite element package. The more popular methods of geophysical inversion seek solutions to an unconstrained optimization problem by imposing stabilizing constraints in the form of smoothing operators on some enormous set of model parameters (i.e. ''over-parametrize and regularize''). In contrast we investigate an alternative approach whereby sharp jumps in material properties are preserved in the solution by choosing as model parameters a modest set of variables which describe an interface between adjacent regions in

  11. Electrode Cultivation and Interfacial Electron Transport in Subsurface Microorganisms

    Science.gov (United States)

    Karbelkar, A. A.; Jangir, Y.; Reese, B. K.; Wanger, G.; Anderson, C.; El-Naggar, M.; Amend, J.

    2016-12-01

    Continental subsurface environments can present significant energetic challenges to the resident microorganisms. While these environments are geologically diverse, potentially allowing energy harvesting by microorganisms that catalyze redox reactions, many of the abundant electron donors and acceptors are insoluble and therefore not directly bioavailable. Microbes can use extracellular electron transfer (EET) as a metabolic strategy to interact with redox active surfaces. This process can be mimicked on electrode surfaces and hence can lead to enrichment and quantification of subsurface microorganisms A primary bioelectrochemical enrichment with different oxidizing and reducing potentials set up in a single bioreactor was applied in situ to subsurface microorganisms residing in iron oxide rich deposits in the Sanford Underground Research Facility. Secondary enrichment revealed a plethora of classified and unclassified subsurface microbiota on both oxidizing and reducing potentials. From this enrichment, we have isolated a Gram-positive Bacillus along with Gram-negative Cupriavidus and Anaerospora strains (as electrode reducers) and Comamonas (as an electrode oxidizer). The Bacillus and Comamonas isolates were subjected to a detailed electrochemical characterization in half-reactors at anodic and cathodic potentials, respectively. An increase in cathodic current upon inoculation and cyclic voltammetry measurements confirm the hypothesis that Comamonas is capable of electron uptake from electrodes. In addition, measurements of Bacillus on anodes hint towards novel mechanisms that allow EET from Gram-positive bacteria. This study suggests that electrochemical approaches are well positioned to dissect such extracellular interactions that may be prevalent in the subsurface, while using physical electrodes to emulate the microhabitats, redox and geochemical gradients, and the spatially dependent interspecies interactions encountered in the subsurface. Electrochemical

  12. Theoretical and experimental investigations of ferrofluids for guiding and detecting liquids in the subsurface. FY 1997 annual report

    International Nuclear Information System (INIS)

    Moridis, G.J.; Borglin, S.E.; Oldenburg, C.M.; Becker, A.

    1998-03-01

    Ferrofluids are stable colloidal suspensions of magnetic particles in various carrier liquids with high saturation magnetizations, which can be manipulated in virtually any fashion, defying gravitational or viscous forces in response to external magnetic fields. In this report, the authors review the results of their investigation of the potential of ferrofluids (1) to accurately and effectively guide reactants (for in-situ treatment) or barrier liquids (low-viscosity permeation grouts) to contaminated target zones in the subsurface using electromagnetic forces, and (2) to trace the movement and position of liquids injected in the subsurface using geophysical methods. They investigate the use of ferrofluids to enhance the efficiency of in-situ treatment and waste containment through (a) accurate guidance and delivery of reagent liquids to the desired subsurface contamination targets and/or (b) effective sweeping of the contaminated zone as ferrofluids move from the application point to an attracting magnet/collection point. They also investigate exploiting the strong magnetic signature of ferrofluids to develop a method for monitoring of liquid movement and position during injection using electromagnetic methods. The authors demonstrated the ability to induce ferrofluid movement in response to a magnetic field, and measured the corresponding magnetopressure. They demonstrated the feasibility of using conventional magnetometry for detecting subsurface zones of various shapes containing ferrofluids for tracing liquids injected for remediation or barrier formation. Experiments involving spherical, cylindrical and horizontal slabs showed a very good agreement between predictions and measurements

  13. Theoretical and experimental investigations of ferrofluids for guiding and detecting liquids in the subsurface. FY 1997 annual report

    Energy Technology Data Exchange (ETDEWEB)

    Moridis, G.J.; Borglin, S.E.; Oldenburg, C.M.; Becker, A.

    1998-03-01

    Ferrofluids are stable colloidal suspensions of magnetic particles in various carrier liquids with high saturation magnetizations, which can be manipulated in virtually any fashion, defying gravitational or viscous forces in response to external magnetic fields. In this report, the authors review the results of their investigation of the potential of ferrofluids (1) to accurately and effectively guide reactants (for in-situ treatment) or barrier liquids (low-viscosity permeation grouts) to contaminated target zones in the subsurface using electromagnetic forces, and (2) to trace the movement and position of liquids injected in the subsurface using geophysical methods. They investigate the use of ferrofluids to enhance the efficiency of in-situ treatment and waste containment through (a) accurate guidance and delivery of reagent liquids to the desired subsurface contamination targets and/or (b) effective sweeping of the contaminated zone as ferrofluids move from the application point to an attracting magnet/collection point. They also investigate exploiting the strong magnetic signature of ferrofluids to develop a method for monitoring of liquid movement and position during injection using electromagnetic methods. The authors demonstrated the ability to induce ferrofluid movement in response to a magnetic field, and measured the corresponding magnetopressure. They demonstrated the feasibility of using conventional magnetometry for detecting subsurface zones of various shapes containing ferrofluids for tracing liquids injected for remediation or barrier formation. Experiments involving spherical, cylindrical and horizontal slabs showed a very good agreement between predictions and measurements.

  14. Candida albicans pathogenicity mechanisms.

    Science.gov (United States)

    Mayer, François L; Wilson, Duncan; Hube, Bernhard

    2013-02-15

    The polymorphic fungus Candida albicans is a member of the normal human microbiome. In most individuals, C. albicans resides as a lifelong, harmless commensal. Under certain circumstances, however, C. albicans can cause infections that range from superficial infections of the skin to life-threatening systemic infections. Several factors and activities have been identified which contribute to the pathogenic potential of this fungus. Among them are molecules which mediate adhesion to and invasion into host cells, the secretion of hydrolases, the yeast-to-hypha transition, contact sensing and thigmotropism, biofilm formation, phenotypic switching and a range of fitness attributes. Our understanding of when and how these mechanisms and factors contribute to infection has significantly increased during the last years. In addition, novel virulence mechanisms have recently been discovered. In this review we present an update on our current understanding of the pathogenicity mechanisms of this important human pathogen.

  15. Candida albicans pathogenicity mechanisms

    Science.gov (United States)

    Mayer, François L.; Wilson, Duncan; Hube, Bernhard

    2013-01-01

    The polymorphic fungus Candida albicans is a member of the normal human microbiome. In most individuals, C. albicans resides as a lifelong, harmless commensal. Under certain circumstances, however, C. albicans can cause infections that range from superficial infections of the skin to life-threatening systemic infections. Several factors and activities have been identified which contribute to the pathogenic potential of this fungus. Among them are molecules which mediate adhesion to and invasion into host cells, the secretion of hydrolases, the yeast-to-hypha transition, contact sensing and thigmotropism, biofilm formation, phenotypic switching and a range of fitness attributes. Our understanding of when and how these mechanisms and factors contribute to infection has significantly increased during the last years. In addition, novel virulence mechanisms have recently been discovered. In this review we present an update on our current understanding of the pathogenicity mechanisms of this important human pathogen. PMID:23302789

  16. Scenario simulation based assessment of subsurface energy storage

    Science.gov (United States)

    Beyer, C.; Bauer, S.; Dahmke, A.

    2014-12-01

    Energy production from renewable sources such as solar or wind power is characterized by temporally varying power supply. The politically intended transition towards renewable energies in Germany („Energiewende") hence requires the installation of energy storage technologies to compensate for the fluctuating production. In this context, subsurface energy storage represents a viable option due to large potential storage capacities and the wide prevalence of suited geological formations. Technologies for subsurface energy storage comprise cavern or deep porous media storage of synthetic hydrogen or methane from electrolysis and methanization, or compressed air, as well as heat storage in shallow or moderately deep porous formations. Pressure build-up, fluid displacement or temperature changes induced by such operations may affect local and regional groundwater flow, geomechanical behavior, groundwater geochemistry and microbiology. Moreover, subsurface energy storage may interact and possibly be in conflict with other "uses" like drinking water abstraction or ecological goods and functions. An utilization of the subsurface for energy storage therefore requires an adequate system and process understanding for the evaluation and assessment of possible impacts of specific storage operations on other types of subsurface use, the affected environment and protected entities. This contribution presents the framework of the ANGUS+ project, in which tools and methods are developed for these types of assessments. Synthetic but still realistic scenarios of geological energy storage are derived and parameterized for representative North German storage sites by data acquisition and evaluation, and experimental work. Coupled numerical hydraulic, thermal, mechanical and reactive transport (THMC) simulation tools are developed and applied to simulate the energy storage and subsurface usage scenarios, which are analyzed for an assessment and generalization of the imposed THMC

  17. Subsurface application of poultry litter and its influence on nutrient losses in runoff water from permanent pastures.

    Science.gov (United States)

    Watts, D B; Way, T R; Torbert, H A

    2011-01-01

    Environmental pressure to reduce nutrient losses from agricultural fields has increased in recent years. To abate this nutrient loss to the environment, better management practices and new technologies need to be developed. Thus, research was conducted to evaluate if subsurface banding poultry litter (PL) would reduce nitrogen (N) and phosphorus (P) loss in surface water runoff using a four-row prototype implement. Rainfall simulations were conducted to create a 40-min runoff event in an established bermudagrass (Cynodon dactylon L.) pasture on soil types common to the Coastal Plain and Piedmont regions. The Coastal Plain soil type was a Marvyn loamy sand (fine-loamy, kaolinitic, thermic Typic Kanhapludults) and the Piedmont soil type was a Hard Labor loamy sand (fine, kaolinitic, thermic Oxyaquic Kanhapludults). Treatments consisted of surface- and subsurface-applied PL at a rate of 9 Mg ha(-1), surface broadcast-applied commercial fertilizer (CF; urea and triple superphosphate blend) at the equivalent N (330 kg N ha(-1)) and P (315 kg N ha(-1)) content of PL, and a nonfertilized control. The greatest loss for inorganic N, total N, dissolved reactive P (DRP), and total P occurred with the surface broadcast treatments, with CF contributing to the greatest loss. Nutrient losses from the subsurface banded treatment reduced N and P in surface water runoff to levels of the control. Subsurface banding of PL reduced concentrations of inorganic N 91%, total N 90%, DRP 86%, and total P 86% in runoff water compared with surface broadcasted PL. These results show that subsurface band-applied PL can greatly reduce the impact of N and P loss to the environment compared with conventional surface-applied PL and CF practices.

  18. Uranium Biomineralization by Natural Microbial Phosphatase Activities in the Subsurface

    Science.gov (United States)

    Martinez, R.; Wu, C. H.; Beazley, M. J.; Andersen, G. L.; Hazen, T. C.; Taillefert, M.; Sobecky, P. A.

    2011-12-01

    Soils and groundwater contaminated with heavy metals and radionuclides remain a legacy of Cold War nuclear weapons development. Due to the scale of environmental contamination, in situ sequestration of heavy metals and radionuclides remain the most cost-effective strategy for remediation. We are currently investigating a remediation approach that utilizes periplasmic and extracellular microbial phosphatase activity of soil bacteria capable promoting in situ uranium phosphate sequestration. Our studies focus on the contaminated soils from the DOE Field Research Center (ORFRC) in Oak Ridge, TN. We have previously demonstrated that ORFRC strains with phosphatase-positive phenotypes were capable of promoting the precpitation of >95% U(VI) as a low solubility phosphate mineral during growth on glycerol phosphate as a sole carbon and phosphorus source. Here we present culture-independent soil slurry studies aimed at understanding microbial community dynamics resulting from exogenous organophosphate additions. Soil slurries containing glycerol-2-phosphate (G2P) or glycerol-3-phosphate (G3P) and nitrate as the sole C, P and N sources were incubated under oxic growth conditions at pH 5.5 or pH 6.8. Following treatments, total DNA was extracted and prokaryotic diversity was assessed using high-density 16S oligonucleotide microarray (PhyloChip) analysis. Treatments at pH 5.5 and pH 6.8 amended with G2P required 36 days to accumulate 4.8mM and 2.2 mM phosphate, respectively. In contrast, treatments at pH 5.5 and pH 6.8 amended with G3P accumulated 8.9 mM and 8.7 mM phosphate, respectively, after 20 days. A total of 2120 unique taxa representing 46 phyla, 66 classes, 110 orders, and 186 families were detected among all treatment conditions. The phyla that significantly (P<0.05) increased in abundance relative to incubations lacking organophosphate amendments included: Crenarchaeota, Euryarchaeota, Bacteroidetes, and Proteobacteria. Members from the classes Bacteroidetes

  19. Pathogenicity of Trypanosoma congolense infection following oral ...

    African Journals Online (AJOL)

    Eighty healthy adult albino rats of both sexes weighing 180-200g were used in two experiments to study the effects of oral calcium chloride treatment on the pathogenicity of Trypanosoma congolense infection. Experiment 1 was terminated at the peak of parasitaemia while experiment II was allowed to run a full course.

  20. Antimicrobial susceptibilty of potentially pathogenic halophilic Vibrio ...

    African Journals Online (AJOL)

    Surveillance of antimicrobial resistance is indispensable for empirical treatment of infections and in preventing the spread of antimicrobial resistant microorganisms. This study is aimed at determining the antibiotic susceptibility of potentially pathogenic halophylic Vibrio species isolated in Lagos, Nigeria. Susceptibility ...

  1. Susceptibility of pathogenic and nonpathogenic Naegleria ssp

    Energy Technology Data Exchange (ETDEWEB)

    Whiteman, L.Y.

    1988-01-01

    The susceptibility of four species of Naegleria amoebae to complement-mediated lysis was determined. The amoebicidal activity of normal human serum (NHS) and normal guinea pig serum (NGPS) for Naegleria amoebae was measured by an in vitro cytotoxicity assay. Release of radioactivity from amoebae labeled with {sup 3}H-uridine and visual observation with a compound microscope were used as indices of lysis. Susceptibility or resistance to complement-mediated lysis in vitro correlated with the in vivo pathogenic potential. Nonpathogenic Naegleria amoebae were lysed at a faster rate and at higher cell concentrations than were pathogenic amoebae. Electrophoretic analysis of NHS incubated with pathogenic or nonpathogenic Naegleria spp. demonstrated that amoebae activate the complement cascade resulting in the production of C3 and C5 complement cleavage products. Treatment with papain or trypsin for 1 h, but not with sialidase, increase the susceptibility of highly pathogenic, mouse-passaged N. fowleri to lysis. Treatment with actinomycin D, cycloheximide or various protease inhibitors for 4 h did not increase susceptibility to lysis. Neither a repair process involving de novo protein synthesis nor a complement-inactivating protease appear to account for the increase resistance of N. fowleri amoebae to complement-mediated lysis. A binding study with {sup 125}I radiolabeled C9 indicated that the terminal complement component does not remain stably bound to the membrane of pathogenic amoebae.

  2. Groundwater Salinity Simulation of a Subsurface Reservoir in Taiwan

    Science.gov (United States)

    Fang, H. T.

    2015-12-01

    The subsurface reservoir is located in Chi-Ken Basin, Pescadores (a group islands located at western part of Taiwan). There is no river in these remote islands and thus the freshwater supply is relied on the subsurface reservoir. The basin area of the subsurface reservoir is 2.14 km2 , discharge of groundwater is 1.27×106m3 , annual planning water supplies is 7.9×105m3 , which include for domestic agricultural usage. The annual average temperature is 23.3oC, average moisture is 80~85%, annual average rainfall is 913 mm, but ET rate is 1975mm. As there is no single river in the basin; the major recharge of groundwater is by infiltration. Chi-Ken reservoir is the first subsurface reservoir in Taiwan. Originally, the water quality of the reservoir is good. The reservoir has had the salinity problem since 1991 and it became more and more serious from 1992 until 1994. Possible reason of the salinity problem was the shortage of rainfall or the leakage of the subsurface barrier which caused the seawater intrusion. The present study aimed to determine the leakage position of subsurface barrier that caused the salinity problem. In order to perform the simulation for different possible leakage position of the subsurface reservoir, a Groundwater Modeling System (GMS) is used to define soils layer data, hydro-geological parameters, initial conditions, boundary conditions and the generation of three dimension meshes. A three dimension FEMWATER(Yeh , 1996) numerical model was adopted to find the possible leakage position of the subsurface barrier and location of seawater intrusion by comparing the simulation of different possible leakage with the observations. 1.By assuming the leakage position in the bottom of barrier, the simulated numerical result matched the observation better than the other assumed leakage positions. It showed that the most possible leakage position was at the bottom of the barrier. 2.The research applied three dimension FEMWATER and GMS as an interface

  3. Asset management to support urban land and subsurface management.

    Science.gov (United States)

    Maring, Linda; Blauw, Maaike

    2018-02-15

    Pressure on urban areas increases by demographic and climate change. To enable healthy, adaptive and liveable urban areas different strategies are needed. One of the strategies is to make better use of subsurface space and its functions. Asset management of the Subsurface (AMS) contributes to this. Asset management provides transparency of trade-offs between performance, cost and risks throughout the entire lifecycle of these assets. AMS is based on traditional asset management methods, but it does not only take man-made assets in the subsurface into account. AMS also considers the natural functions that the subsurface, including groundwater, has to offer (ecosystem services). A Dutch community of practice consisting of national and municipal authorities, a consultancy-engineering and a research institute are developing AMS in practice in order to 1) enhance the urban underground space planning (using its benefits, avoiding problems) and 2) use, manage and maintain the (urban) subsurface and its functions. The method is currently still under development. Copyright © 2017 Elsevier B.V. All rights reserved.

  4. Lower-Temperature Subsurface Layout and Ventilation Concepts

    International Nuclear Information System (INIS)

    Christine L. Linden; Edward G. Thomas

    2001-01-01

    This analysis combines work scope identified as subsurface facility (SSF) low temperature (LT) Facilities System and SSF LT Ventilation System in the Technical Work Plan for Subsurface Design Section FY 01 Work Activities (CRWMS M and O 2001b, pp. 6 and 7, and pp. 13 and 14). In accordance with this technical work plan (TWP), this analysis is performed using AP-3.10Q, Analyses and Models. It also incorporates the procedure AP-SI.1Q, Software Management. The purpose of this analysis is to develop an overall subsurface layout system and the overall ventilation system concepts that address a lower-temperature operating mode for the Monitored Geologic Repository (MGR). The objective of this analysis is to provide a technical design product that supports the lower-temperature operating mode concept for the revision of the system description documents and to provide a basis for the system description document design descriptions. The overall subsurface layout analysis develops and describes the overall subsurface layout, including performance confirmation facilities (also referred to as Test and Evaluation Facilities) for the Site Recommendation design. This analysis also incorporates current program directives for thermal management

  5. Peeking Beneath the Caldera: Communicating Subsurface Knowledge of Newberry Volcano

    Science.gov (United States)

    Mark-Moser, M.; Rose, K.; Schultz, J.; Cameron, E.

    2016-12-01

    "Imaging the Subsurface: Enhanced Geothermal Systems and Exploring Beneath Newberry Volcano" is an interactive website that presents a three-dimensional subsurface model of Newberry Volcano developed at National Energy Technology Laboratory (NETL). Created using the Story Maps application by ArcGIS Online, this format's dynamic capabilities provide the user the opportunity for multimedia engagement with the datasets and information used to build the subsurface model. This website allows for an interactive experience that the user dictates, including interactive maps, instructive videos and video capture of the subsurface model, and linked information throughout the text. This Story Map offers a general background on the technology of enhanced geothermal systems and the geologic and development history of Newberry Volcano before presenting NETL's modeling efforts that support the installation of enhanced geothermal systems. The model is driven by multiple geologic and geophysical datasets to compare and contrast results which allow for the targeting of potential EGS sites and the reduction of subsurface uncertainty. This Story Map aims to communicate to a broad audience, and provides a platform to effectively introduce the model to researchers and stakeholders.

  6. Integrated Surface/subsurface flow modeling in PFLOTRAN

    Energy Technology Data Exchange (ETDEWEB)

    Painter, Scott L [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)

    2016-10-01

    Understanding soil water, groundwater, and shallow surface water dynamics as an integrated hydrological system is critical for understanding the Earth’s critical zone, the thin outer layer at our planet’s surface where vegetation, soil, rock, and gases interact to regulate the environment. Computational tools that take this view of soil moisture and shallow surface flows as a single integrated system are typically referred to as integrated surface/subsurface hydrology models. We extend the open-source, highly parallel, subsurface flow and reactive transport simulator PFLOTRAN to accommodate surface flows. In contrast to most previous implementations, we do not represent a distinct surface system. Instead, the vertical gradient in hydraulic head at the land surface is neglected, which allows the surface flow system to be eliminated and incorporated directly into the subsurface system. This tight coupling approach leads to a robust capability and also greatly simplifies implementation in existing subsurface simulators such as PFLOTRAN. Successful comparisons to independent numerical solutions build confidence in the approximation and implementation. Example simulations of the Walker Branch and East Fork Poplar Creek watersheds near Oak Ridge, Tennessee demonstrate the robustness of the approach in geometrically complex applications. The lack of a robust integrated surface/subsurface hydrology capability had been a barrier to PFLOTRAN’s use in critical zone studies. This work addresses that capability gap, thus enabling PFLOTRAN as a community platform for building integrated models of the critical zone.

  7. Human pathogen avoidance adaptations

    NARCIS (Netherlands)

    Tybur, J.M.; Lieberman, D.

    2016-01-01

    Over the past few decades, researchers have become increasingly interested in the adaptations guiding the avoidance of disease-causing organisms. Here we discuss the latest developments in this area, including a recently developed information-processing model of the adaptations underlying pathogen

  8. Pathogenicity and virulence

    Science.gov (United States)

    Many pathogenic microorganisms are host-specific in that they parasitize only one or a few animal species. For example, the cause of equine strangles, Streptococcus equi subspecies equi, is essentially limited to infection of horses. Others—certain Salmonella serotypes, for example—have a broad host...

  9. The IncF plasmid pRSB225 isolated from a municipal wastewater treatment plant's on-site preflooder combining antibiotic resistance and putative virulence functions is highly related to virulence plasmids identified in pathogenic E. coli isolates.

    Science.gov (United States)

    Wibberg, Daniel; Szczepanowski, Rafael; Eikmeyer, Felix; Pühler, Alfred; Schlüter, Andreas

    2013-03-01

    The IncF antibiotic resistance and virulence plasmid pRSB225, isolated from an unknown bacterium released with the purified wastewater from a municipal sewage treatment plant into the environment has been analysed at the genomic level by pyrosequencing. The 164,550bp plasmid comprises 210 coding sequences (cds). It is composed of three replicons (RepFIA, RepFIB, and RepFII) and encodes further plasmid-specific functions for stable maintenance and inheritance and conjugative plasmid transfer. The plasmid is self-transmissible and shows a narrow host range limited to the family Enterobacteriaceae. The accessory modules of the plasmid mainly comprise genes conferring resistance to ampicillin (bla(TEM-1b)), chloramphenicol (catA1), erythromycin (mphA), kanamycin and neomycin (aphA1), streptomycin (strAB), sulphonamides (sul2), tetracycline (tetA(B)) and trimethoprim (dfrA14), as well as mercuric ions (mer genes). In addition, putative virulence-associated genes coding for iron uptake (iutA/iucABCD, sitABCD, and a putative high-affinity Fe²⁺ uptake system) and for a toxin/antitoxin system (vagCD) were identified on the plasmid. All antibiotic and heavy metal resistance genes are located either on class 1 (Tn10-remnant, Tn4352B) and class 2 transposons (Tn2-remnant, Tn21, Tn402-remnant) or a class 1 integron, whereas almost all putative virulence genes are associated with IS elements (IS1, IS26), indicating that transposition and/or recombination events were responsible for acquisition of the accessory pRSB225 modules. Particular modules of plasmid pRSB225 are related to corresponding segments of different virulence plasmids harboured by pathogenic Escherichia coli strains. Moreover, pRSB225 modules were also detected in entero-aggregative-haemorrhagic E. coli (EAHEC) draft genome sequences suggesting that IncF plasmids related to pRSB225 mediated gene transfer into pathogenic E. coli derivatives. Copyright © 2012 Elsevier Inc. All rights reserved.

  10. Staphylococcus lugdunensis, a serious pathogen in periprosthetic joint infections: comparison to Staphylococcus aureus and Staphylococcus epidermidis

    Directory of Open Access Journals (Sweden)

    J. Lourtet-Hascoët

    2016-10-01

    Conclusion: S. lugdunensis is an emerging pathogen with a pathogenicity quite similar to that of S. aureus. This coagulase-negative Staphylococcus must be identified precisely in PJI, in order to select the appropriate surgical treatment and antibiotics .

  11. Transport and fate of microbial pathogens in agricultural settings

    Science.gov (United States)

    Bradford, Scott A.; Morales, Veronica L.; Zhang, Wei; Harvey, Ronald W.; Packman, Aaron I.; Mohanram, Arvind; Welty, Claire

    2013-01-01

    An understanding of the transport and survival of microbial pathogens (pathogens hereafter) in agricultural settings is needed to assess the risk of pathogen contamination to water and food resources, and to develop control strategies and treatment options. However, many knowledge gaps still remain in predicting the fate and transport of pathogens in runoff water, and then through the shallow vadose zone and groundwater. A number of transport pathways, processes, factors, and mathematical models often are needed to describe pathogen fate in agricultural settings. The level of complexity is dramatically enhanced by soil heterogeneity, as well as by temporal variability in temperature, water inputs, and pathogen sources. There is substantial variability in pathogen migration pathways, leading to changes in the dominant processes that control pathogen transport over different spatial and temporal scales. For example, intense rainfall events can generate runoff and preferential flow that can rapidly transport pathogens. Pathogens that survive for extended periods of time have a greatly enhanced probability of remaining viable when subjected to such rapid-transport events. Conversely, in dry seasons, pathogen transport depends more strongly on retention at diverse environmental surfaces controlled by a multitude of coupled physical, chemical, and microbiological factors. These interactions are incompletely characterized, leading to a lack of consensus on the proper mathematical framework to model pathogen transport even at the column scale. In addition, little is known about how to quantify transport and survival parameters at the scale of agricultural fields or watersheds. This review summarizes current conceptual and quantitative models for pathogen transport and fate in agricultural settings over a wide range of spatial and temporal scales. The authors also discuss the benefits that can be realized by improved modeling, and potential treatments to mitigate the risk

  12. Neonatal intensive care unit: Reservoirs of Nosocomial pathogens ...

    African Journals Online (AJOL)

    Improvement in the care and treatment of neonates had contributed to their increased survival. Nosocomial infection remains an important problem in intensive care units. Hospital wards had been shown to act as reservoirs of pathogenic microorganisms associated with infection. To assess the prevalence of pathogenic ...

  13. Pathogen removal using saturated sand colums supplemented with hydrochar

    NARCIS (Netherlands)

    Chung, J.W.

    2015-01-01

    This PhD study has evaluated hydrochars derived from biowastes as adsorbents for pathogen removal in water treatment. Pathogen removal experiments were conducted by carrying out breakthrough analysis using a simple sand filtration set-up. Glass columns packed by 10 cm sand bed supplemented with

  14. Enteric pathogen modification by anaecic earthworm, Lampito Mauritii

    African Journals Online (AJOL)

    The biosolids from municipal wastewater treatment plant contains several enteric microbial pathogens, predominantly Salmonella and Escherichia species in the range of 15-18 x 104 CFU/g and 11-12 x 104 CFU/g respectively. The present study investigates the influence of earthworm, Lampito mauritii on enteric pathogen ...

  15. An Assessment of Subsurface Residual Stress Analysis in SLM Ti-6Al-4V

    Directory of Open Access Journals (Sweden)

    Tatiana Mishurova

    2017-03-01

    Full Text Available Ti-6Al-4V bridges were additively fabricated by selective laser melting (SLM under different scanning speed conditions, to compare the effect of process energy density on the residual stress state. Subsurface lattice strain characterization was conducted by means of synchrotron diffraction in energy dispersive mode. High tensile strain gradients were found at the frontal surface for samples in an as-built condition. The geometry of the samples promotes increasing strains towards the pillar of the bridges. We observed that the higher the laser energy density during fabrication, the lower the lattice strains. A relief of lattice strains takes place after heat treatment.

  16. Microbial community responses to organophosphate substrate additions in contaminated subsurface sediments.

    Directory of Open Access Journals (Sweden)

    Robert J Martinez

    Full Text Available BACKGROUND: Radionuclide- and heavy metal-contaminated subsurface sediments remain a legacy of Cold War nuclear weapons research and recent nuclear power plant failures. Within such contaminated sediments, remediation activities are necessary to mitigate groundwater contamination. A promising approach makes use of extant microbial communities capable of hydrolyzing organophosphate substrates to promote mineralization of soluble contaminants within deep subsurface environments. METHODOLOGY/PRINCIPAL FINDINGS: Uranium-contaminated sediments from the U.S. Department of Energy Oak Ridge Field Research Center (ORFRC Area 2 site were used in slurry experiments to identify microbial communities involved in hydrolysis of 10 mM organophosphate amendments [i.e., glycerol-2-phosphate (G2P or glycerol-3-phosphate (G3P] in synthetic groundwater at pH 5.5 and pH 6.8. Following 36 day (G2P and 20 day (G3P amended treatments, maximum phosphate (PO4(3- concentrations of 4.8 mM and 8.9 mM were measured, respectively. Use of the PhyloChip 16S rRNA microarray identified 2,120 archaeal and bacterial taxa representing 46 phyla, 66 classes, 110 orders, and 186 families among all treatments. Measures of archaeal and bacterial richness were lowest under G2P (pH 5.5 treatments and greatest with G3P (pH 6.8 treatments. Members of the phyla Crenarchaeota, Euryarchaeota, Bacteroidetes, and Proteobacteria demonstrated the greatest enrichment in response to organophosphate amendments and the OTUs that increased in relative abundance by 2-fold or greater accounted for 9%-50% and 3%-17% of total detected Archaea and Bacteria, respectively. CONCLUSIONS/SIGNIFICANCE: This work provided a characterization of the distinct ORFRC subsurface microbial communities that contributed to increased concentrations of extracellular phosphate via hydrolysis of organophosphate substrate amendments. Within subsurface environments that are not ideal for reductive precipitation of uranium

  17. Prediction of Geological Subsurfaces Based on Gaussian Random Field Models

    Energy Technology Data Exchange (ETDEWEB)

    Abrahamsen, Petter

    1997-12-31

    During the sixties, random functions became practical tools for predicting ore reserves with associated precision measures in the mining industry. This was the start of the geostatistical methods called kriging. These methods are used, for example, in petroleum exploration. This thesis reviews the possibilities for using Gaussian random functions in modelling of geological subsurfaces. It develops methods for including many sources of information and observations for precise prediction of the depth of geological subsurfaces. The simple properties of Gaussian distributions make it possible to calculate optimal predictors in the mean square sense. This is done in a discussion of kriging predictors. These predictors are then extended to deal with several subsurfaces simultaneously. It is shown how additional velocity observations can be used to improve predictions. The use of gradient data and even higher order derivatives are also considered and gradient data are used in an example. 130 refs., 44 figs., 12 tabs.

  18. The Mojave vadose zone: a subsurface biosphere analogue for Mars.

    Science.gov (United States)

    Abbey, William; Salas, Everett; Bhartia, Rohit; Beegle, Luther W

    2013-07-01

    If life ever evolved on the surface of Mars, it is unlikely that it would still survive there today, but as Mars evolved from a wet planet to an arid one, the subsurface environment may have presented a refuge from increasingly hostile surface conditions. Since the last glacial maximum, the Mojave Desert has experienced a similar shift from a wet to a dry environment, giving us the opportunity to study here on Earth how subsurface ecosystems in an arid environment adapt to increasingly barren surface conditions. In this paper, we advocate studying the vadose zone ecosystem of the Mojave Desert as an analogue for possible subsurface biospheres on Mars. We also describe several examples of Mars-like terrain found in the Mojave region and discuss ecological insights that might be gained by a thorough examination of the vadose zone in these specific terrains. Examples described include distributary fans (deltas, alluvial fans, etc.), paleosols overlain by basaltic lava flows, and evaporite deposits.

  19. Impact disruption and recovery of the deep subsurface biosphere

    DEFF Research Database (Denmark)

    Cockell, Charles S.; Voytek, Mary A.; Gronstal, Aaaron L

    2012-01-01

    Although a large fraction of the world's biomass resides in the subsurface, there has been no study of the effects of catastrophic disturbance on the deep biosphere and the rate of its subsequent recovery. We carried out an investigation of the microbiology of a 1.76 km drill core obtained from......, by fracturing subsurface rocks, impacts can extend the depth of the biosphere. This phenomenon would have provided deep refugia for life on the more heavily bombarded early Earth, and it shows that the deeply fractured regions of impact craters are promising targets to study the past and present habitability...... of Mars. Key Words: Asteroid—Impacts—Subsurface biosphere—Subterranean environment—Geobiology. Astrobiology 12, 231–246....

  20. A subsurface add-on for standard atomic force microscopes.

    Science.gov (United States)

    Verbiest, G J; van der Zalm, D J; Oosterkamp, T H; Rost, M J

    2015-03-01

    The application of ultrasound in an Atomic Force Microscope (AFM) gives access to subsurface information. However, no commercially AFM exists that is equipped with this technique. The main problems are the electronic crosstalk in the AFM setup and the insufficiently strong excitation of the cantilever at ultrasonic (MHz) frequencies. In this paper, we describe the development of an add-on that provides a solution to these problems by using a special piezo element with a lowest resonance frequency of 2.5 MHz and by separating the electronic connection for this high frequency piezo element from all other connections. In this sense, we support researches with the possibility to perform subsurface measurements with their existing AFMs and hopefully pave also the way for the development of a commercial AFM that is capable of imaging subsurface features with nanometer resolution.

  1. Imaging subsurface geology and volatile organic compound plumes

    International Nuclear Information System (INIS)

    Qualheim, B.J.; Daley, P.F.; Johnson, V.; McPherrin, R.V.; Laguna, G.

    1992-03-01

    Lawrence Livermore National Laboratory (LLNL) (Fig. 1) is in the final stages of the Superfund decisionmaking process for site remediation and restoration. In the process of characterizing the subsurface of the LLNL site, we have developed unique methods of collecting, storing, retrieving, and imaging geologic and chemical data from more than 350 drill holes. The lateral and vertical continuity of subsurface paleostream channels were mapped for the entire LLNL site using geologic descriptions from core samples, cuttings, and interpretations from geophysical logs. A computer-aided design and drafting program, SLICE, written at LLNL, was used to create two-dimensional maps of subsurface sediments, and state-of-the-art software produced three-dimensional images of the volatile organic compound (VOC) plumes using data from water and core fluid analyses

  2. Institutions, mechanisms and methods of innovative subsurface resources management

    Directory of Open Access Journals (Sweden)

    Irina Gennadyevna Polyanskaya

    2013-03-01

    Full Text Available In the article, the attempt to form the innovation system as a set of subsurface resources management of institutions, mechanisms and tools is made on the basis of an analysis of existing institutions to promote innovation. The timeliness and the need for systemic innovation development of subsurface resources management for Russia are mentioned in contexts of organization the national and global innovation systems. The authors take notice to the locality of activities of institutions of government, business and science and the lack of balance in their methods and instruments among themselves. The necessary to eliminate underdevelopment of individual institutions and the establishment of the mechanism to determinethetotaleffectiveness of theinnovativesubsurfaceresources management istheconclusion. Well-oiled mechanism of interaction involves the simultaneous use of all elements of the system of the innovative subsurface resources management. It allows to adapt the overall system to a particular area with mineral deposits and to improve its competitiveness.

  3. Autophagy in plant pathogenic fungi.

    Science.gov (United States)

    Liu, Xiao-Hong; Xu, Fei; Snyder, John Hugh; Shi, Huan-Bin; Lu, Jian-Ping; Lin, Fu-Cheng

    2016-09-01

    Autophagy is a conserved cellular process that degrades cytoplasmic constituents in vacuoles. Plant pathogenic fungi develop special infection structures and/or secrete a range of enzymes to invade their plant hosts. It has been demonstrated that monitoring autophagy processes can be extremely useful in visualizing the sequence of events leading to pathogenicity of plant pathogenic fungi. In this review, we introduce the molecular mechanisms involved in autophagy. In addition, we explore the relationship between autophagy and pathogenicity in plant pathogenic fungi. Finally, we discuss the various experimental strategies available for use in the study of autophagy in plant pathogenic fungi. Copyright © 2016 Elsevier Ltd. All rights reserved.

  4. Studies of the subsurface zone created in aluminium and its alloys by means of positron annihilation and complementary methods

    International Nuclear Information System (INIS)

    Dryzek, E.

    2008-01-01

    There are presented the results of the studies of the subsurface zone created in aluminium and its alloys during sliding or other surface modification treatments. The application of the positron annihilation techniques due to their high sensitivity to crystal lattice defects enabled to determine defects profiles in the subsurface zone. The positron annihilation studies were correlated with other conventional measurements applied in tribology, i.e. microhardness measurements, scanning electron microscopy, X-ray diffraction and in a special case stress distribution calculated theoretically. It was shown that the positron annihilation spectroscopy is a useful tool for profiling of the subsurface zone created during sliding even for light metals their alloys and composites. The total range of the subsurface zone detected by the positron annihilation extends from 50 μm to 450 μm depending on the material studied and surface modification treatment. Additionally, the type of the main defects can be determined. The studies of the pure aluminium samples after dry sliding enabled to find the defect concentration of vacancy type in the depth less then 1 μm and to correlate its value with the size of crystallites. It supports the conclusion on recovery processes taking place in this layer. There was made the attempt to apply the Doppler broadening coincidence spectroscopy to the studies of aluminium alloy and composite. In view of the interdisciplinary character the present thesis enclose also the review of the basic issues of tribology, measurement methods applied to the subsurface zone studies and positron annihilation experimental techniques. (author)

  5. Composting Used as a Low Cost Method for Pathogen Elimination in Sewage Sludge in Mérida, Mexico

    Directory of Open Access Journals (Sweden)

    Rafael Rojas-Herrera

    2013-07-01

    Full Text Available Spreading sewage sludge from municipal wastewater (MWW treatment on land is still a common practice in developing countries. However, it is well known that sewage sludge without special treatment contains various pollutants, which are (reintroduced into the environment by sludge landspreading and which might in turn have harmful effects on the environment and human health. This is more dangerous in places like Merida, Mexico, where soil is calcareous with fractures along the ground and thin layers of humus. Consequently, any liquid and semisolid wastes have the potential of percolating to the subsurface and contaminate the aquifer. The main aim of this work was using composting as a low cost process to eliminate pathogens contained in sewage sludge from MWW treatment in order to use the final product for land spreading in a safe way for both environment and human health. Two piles for composting process at real scale were settled using a mixture of sewage sludge from municipal waste water and green waste. Composting was carried out by windrow process and it was monitored during four weeks. Concentration of helminth eggs, salmonella and faecal coliforms were measured twice a week to observe its behavior and, as a control process, Temperature, Moisture Content (MC, and pH were also measured. After 30 days of composting sludge from municipal waste water system, salmonella was eliminated by 99%, faecal coliforms by 96% and helminth eggs by 81%. After 3 months compost reached GI = 160%, so did not show any phytotoxicity to seeds.

  6. Filamentous pathogen effector functions: of pathogens, hosts and microbiomes

    NARCIS (Netherlands)

    Rövenich, H.; Boshoven, J.C.; Thomma, B.

    2014-01-01

    Microorganisms play essential roles in almost every environment on earth. For instance, microbes decompose organic material, or establish symbiotic relationships that range from pathogenic to mutualistic. Symbiotic relationships have been particularly well studied for microbial plant pathogens and

  7. Trace Element and Cu Isotopic Tracers of Subsurface Flow and Transport in Wastewater Irrigated Soils

    Science.gov (United States)

    Carte, J.; Fantle, M. S.

    2017-12-01

    An understanding of subsurface flow paths is critical for quantifying the fate of contaminants in wastewater irrigation systems. This study investigates the subsurface flow of wastewater by quantifying the distribution of trace contaminants in wastewater irrigated soils. Soil samples were collected from the upper 1m of two wetlands at Penn State University's wastewater irrigation site, at which all effluent from the University's wastewater treatment plant has been sprayed since 1983. Major and trace element and Cu isotopic composition were determined for these samples, in addition to wastewater effluent and bedrock samples. The upper 20 cm of each wetland shows an enrichment of Bi, Cd, Cr, Cu, Mo, Ni, Pb, and Zn concentrations relative to deep (>1m) soils at the site by a factor of 1.7-3.5. Each wetland also has a subsurface clay rich horizon with Bi, Cu, Li, Ni, Pb, and Zn concentrations enriched by a factor of 1.4 to 5 relative to deep soils. These subsurface horizons directly underlie intervals that could facilitate preferential effluent flow: a gravel layer in one wetland, and a silty loam with visible mottling, an indication of dynamic water saturation, in the other. Trace metal concentrations in other horizons from both wetlands fall in the range of the deep soils. Significant variability in Cu isotopic composition is present in soils from both wetlands, with δ65Cu values ranging from 0.74‰ to 5.09‰. Soil δ65Cu correlates well with Cu concentrations, with lighter δ65Cu associated with higher concentrations. The Cu isotopic composition of the zones of metal enrichment are comparable to the ostensible average wastewater effluent δ65Cu value (0.61‰), while other horizons have considerably heavier δ65Cu values. We hypothesize that wastewater is the source of the metal enrichments, as each of the enriched elements are present as contaminants in wastewater, and the enrichments are located in clay-rich horizons conducive to trace metal immobilization due

  8. Subsurface Event Detection and Classification Using Wireless Signal Networks

    Science.gov (United States)

    Yoon, Suk-Un; Ghazanfari, Ehsan; Cheng, Liang; Pamukcu, Sibel; Suleiman, Muhannad T.

    2012-01-01

    Subsurface environment sensing and monitoring applications such as detection of water intrusion or a landslide, which could significantly change the physical properties of the host soil, can be accomplished using a novel concept, Wireless Signal Networks (WSiNs). The wireless signal networks take advantage of the variations of radio signal strength on the distributed underground sensor nodes of WSiNs to monitor and characterize the sensed area. To characterize subsurface environments for event detection and classification, this paper provides a detailed list and experimental data of soil properties on how radio propagation is affected by soil properties in subsurface communication environments. Experiments demonstrated that calibrated wireless signal strength variations can be used as indicators to sense changes in the subsurface environment. The concept of WSiNs for the subsurface event detection is evaluated with applications such as detection of water intrusion, relative density change, and relative motion using actual underground sensor nodes. To classify geo-events using the measured signal strength as a main indicator of geo-events, we propose a window-based minimum distance classifier based on Bayesian decision theory. The window-based classifier for wireless signal networks has two steps: event detection and event classification. With the event detection, the window-based classifier classifies geo-events on the event occurring regions that are called a classification window. The proposed window-based classification method is evaluated with a water leakage experiment in which the data has been measured in laboratory experiments. In these experiments, the proposed detection and classification method based on wireless signal network can detect and classify subsurface events. PMID:23202191

  9. DETERMINATION OF IMPORTANCE EVALUATION FOR THE SUBSURFACE EXPLORATORY STUDIES FACILITY

    International Nuclear Information System (INIS)

    Clark, W.J.

    1999-01-01

    This Determination of Importance Evaluation (DIE) applies to the Subsurface Exploratory Studies Facility (ESF), encompassing the Topopah Spring (TS) Loop from Station 0+00 meters (m) at the North Portal to breakthrough at the South Portal (approximately 78+77 m), the Enhanced Characterization of the Repository Block (ECRB) East-West Cross Drift Starter Tunnel (to approximate ECRB Station 0+26 m), and ancillary test and operation support areas in the TS Loop. This evaluation applies to the construction, operation, and maintenance of these excavations. A more detailed description of these items is provided in Section 6.0. Testing activities are not evaluated in this DIE. Certain construction activities with respect to testing activities are evaluated; but the testing activities themselves are not evaluated. The DIE for ESF Subsurface Testing Activities (BAJ3000000-01717-2200-000111) (CRWMS M and O 1998a) evaluates Subsurface ESF Testing activities. The construction, operation, and maintenance of the TS Loop niches and alcove slot cuts is evaluated herein and is also discussed in CRWMS M and O 1998a. The construction, operation, and maintenance of the Busted Butte subsurface test area in support of the Unsaturated Zone (UZ) Transport Test is evaluated in CRWMS M and O 1998a. Potential test-to-test interference and the waste isolation impacts of testing activities are evaluated in the ESF Subsurface Testing Activities DIE and other applicable evaluation(s) for the Job Package (JP), Test Planning Package (TPP), and/or Field Work Package (FWP). The objectives of this DIE are to determine whether the Subsurface ESF TS Loop and associated excavations, including activities associated with their construction and operation, potentially impact site characterization testing or the waste isolation capabilities of the site. Controls needed to limit any potential impacts are identified. The validity and veracity of the individual tests, including data collection, are the

  10. DETERMINATION OF IMPORTANCE EVALUATION FOR THE SUBSURFACE EXPORATORY STUDIES FACILITY

    Energy Technology Data Exchange (ETDEWEB)

    W.J. Clark

    1999-06-28

    This Determination of Importance Evaluation (DIE) applies to the Subsurface Exploratory Studies Facility (ESF), encompassing the Topopah Spring (TS) Loop from Station 0+00 meters (m) at the North Portal to breakthrough at the South Portal (approximately 78+77 m), the Enhanced Characterization of the Repository Block (ECRB) East-West Cross Drift Starter Tunnel (to approximate ECRB Station 0+26 m), and ancillary test and operation support areas in the TS Loop. This evaluation applies to the construction, operation, and maintenance of these excavations. A more detailed description of these items is provided in Section 6.0. Testing activities are not evaluated in this DIE. Certain construction activities with respect to testing activities are evaluated; but the testing activities themselves are not evaluated. The DIE for ESF Subsurface Testing Activities (BAJ3000000-01717-2200-00011 Rev 01) (CRWMS M&O 1998a) evaluates Subsurface ESF Testing activities. The construction, operation, and maintenance of the TS Loop niches and alcove slot cuts is evaluated herein and is also discussed in CRWMS M&O 1998a. The construction, operation, and maintenance of the Busted Butte subsurface test area in support of the Unsaturated Zone (UZ) Transport Test is evaluated in CRWMS M&O 1998a. Potential test-to-test interference and the waste isolation impacts of testing activities are evaluated in the ESF Subsurface Testing Activities DIE and other applicable evaluation(s) for the Job Package (JP), Test Planning Package (TPP), and/or Field Work Package (FWP). The objectives of this DIE are to determine whether the Subsurface ESF TS Loop and associated excavations, including activities associated with their construction and operation, potentially impact site characterization testing or the waste isolation capabilities of the site. Controls needed to limit any potential impacts are identified. The validity and veracity of the individual tests, including data collection, are the responsibility

  11. Dual-gas tracers for subsurface characterization and NAPL detection

    International Nuclear Information System (INIS)

    Gauglitz, P.A.; Peurrung, L.M.; Mendoza, D.P.; Pillay, G.

    1994-11-01

    Effective design of in situ remediation technologies often requires an understanding of the mass transfer limitations that control the removal of contaminants from the soil. In addition, the presence of nonaqueous phase liquids (NAPLs) in soils will affect the ultimate success or failure of remediation processes. Knowing the location of NAPLs within the subsurface is critical to designing the most effective remediation approach. This work focuses on demonstrating that gas tracers can detect the location of the NAPLs in the subsurface and elucidating the mass transfer limitations associated with the removal of contaminants from soils

  12. Cut-off wall system for subsurface liquid containment

    International Nuclear Information System (INIS)

    Carlson, R.; Khan, F.

    1997-01-01

    The subject of this paper is the use of a Cut-off Wall System (CWS) in conjunction with conventional soil bentonite slurry walls. The system is a vertical subsurface containment solution for isolating contaminated soils and groundwater in situ, thereby enhancing protection of the environment. The CWS is composed of geomembrane panels and specially designed connectors that form an interlocking subsurface vertical barrier wall. This system provides a cost effective, easily installed, positive cut-off for isolation of mixed and hazardous wastes, and wastes from uncontrolled releases. This application will address manufacturing, fabrication, installation, strength, QA/QC, chemical compatibility, and permeability

  13. Subsurface In Situ Elemental Composition Measurements with PING

    Science.gov (United States)

    Parsons, Ann; McClanahan, Timothy; Bodnarik, Julia; Evans, Larry; Nowicki, Suzanne; Schweitzer, Jeffrey; Starr, Richard

    2013-01-01

    This paper describes the Probing In situ with Neutron and Gamma rays (PING) instrument, that can measure the subsurface elemental composition in situ for any rocky body in the solar system without the need for digging into the surface. PING consists of a Pulsed Neutron Generator (PNG), a gamma ray spectrometer and neutron detectors. Subsurface elements are stimulated by high-energy neutrons to emit gamma rays at characteristic energies. This paper will show how the detection of these gamma rays results in a measurement of elemental composition. Examples of the basalt to granite ratios for aluminum and silicon abundance are provided.

  14. Interactive directional subsurface scattering and transport of emergent light

    DEFF Research Database (Denmark)

    Dal Corso, Alessandro; Frisvad, Jeppe Revall; Mosegaard, Jesper

    2016-01-01

    Existing techniques for interactive rendering of deformable translucent objects can accurately compute diffuse but not directional subsurface scattering effects. It is currently a common practice to gain efficiency by storing maps of transmitted irradiance. This is, however, not efficient if we....... To build our maps of scattered radiosity, we progressively render the model from different directions using an importance sampling pattern based on the optical properties of the material. We obtain interactive frame rates, our subsurface scattering results are close to ground truth, and our technique...

  15. A Phase II Randomized, Double-blind, Multicenter Study to Evaluate Efficacy and Safety of Intravenous Iclaprim Versus Vancomycin for the Treatment of Nosocomial Pneumonia Suspected or Confirmed to be Due to Gram-positive Pathogens.

    Science.gov (United States)

    Huang, David B; File, Thomas M; Torres, Antoni; Shorr, Andrew F; Wilcox, Mark H; Hadvary, Paul; Dryden, Matthew; Corey, G Ralph

    2017-08-01

    The primary objective of this Phase II study was to compare the clinical cure rates of 2 iclaprim dosages versus vancomycin in the treatment of patients with nosocomial pneumonia suspected or confirmed to be caused by gram-positive pathogens. This study was a double-blind, randomized, multicenter trial. A total of 70 patients were randomized 1:1:1 to receive iclaprim 0.8 mg/kg IV q12h (iclaprim q12h; n = 23), iclaprim 1.2 mg/kg IV q8h (iclaprim q8h; n = 24), or vancomycin 1 g IV q12h (vancomycin; n = 23) for 7 to 14 days. The primary end point was clinical cure in the intention-to-treat population at test of cure (TOC; 7 [1] days' posttreatment) visit. The baseline and demographic characteristics of patients treated with either iclaprim or vancomycin were comparable. Cure rates in the intention-to-treat population were 73.9% (17 of 23), 62.5% (15 of 24), and 52.2% (12 of 23) at the TOC visit in the iclaprim q12h, iclaprim q8h, and vancomycin groups, respectively (iclaprim q12h vs vancomycin, P = 0.13; iclaprim q8h vs vancomycin, P = 0.47). The death rates within 28 days of the start of treatment were 8.7% (2 of 23), 12.5% (3 of 24), and 21.7% (5 of 23) for the iclaprim q12h, iclaprim q8h, and vancomycin groups (no statistically significant differences). The adverse event profile of both iclaprim dosing regimens was similar to that of vancomycin. Iclaprim had clinical cure rates and a safety profile comparable with vancomycin among patients with nosocomial pneumonia. Iclaprim could be an important new therapeutic option for the treatment of nosocomial pneumonia, and a pivotal clinical trial is warranted to evaluate its safety and efficacy in this indication. Copyright © 2017 Elsevier HS Journals, Inc. All rights reserved.

  16. Design of combination biofilter and subsurface constructed wetland-multilayer filtration with vertical flow type using Vetiveria zizanioides (akar wangi)

    Science.gov (United States)

    Astuti, A. D.; Lindu, M.; Yanidar, R.; Faruq, M.

    2018-01-01

    As environmental regulation has become stricter in recent years, there is an increasing concern about the issue of wastewater treatment in urban areas. Senior High School as center of student activity has a potential source to generated domestic wastewater from toilet, bathroom and canteen. Canteen wastewater contains high-organic content that to be treated before discharged. Based on previous research the subsurface constructed wetland-multilayer filtration with vertical flow is an attractive alternative to provide efficient treatment of canteen wastewater. The effluent concentration complied with regulation according to [9]. Due to limited land, addition of preliminary treatment such as the presence of biofilter was found to improve the performance. The aim of this study was to design combination biofilter and subsurface constructed wetland-multilayer filtration with vertical flow type using vetiveria zizanioides (akar wangi) treating canteen wastewater. Vetiveria zizanioides (akar wangi) is used because from previous research, subsurface constructed wetland-multilayer filtration (SCW-MLF) with vertical flow type using vetiveria zizanioides (akar wangi) can be an alternative canteen wastewater treatment that is uncomplicated in technology, low cost in operational and have a beautiful landscape view, besides no odors or insects were presented during the operation.

  17. Candida albicans pathogenicity mechanisms

    OpenAIRE

    Mayer, Fran?ois L.; Wilson, Duncan; Hube, Bernhard

    2013-01-01

    The polymorphic fungus Candida albicans is a member of the normal human microbiome. In most individuals, C. albicans resides as a lifelong, harmless commensal. Under certain circumstances, however, C. albicans can cause infections that range from superficial infections of the skin to life-threatening systemic infections. Several factors and activities have been identified which contribute to the pathogenic potential of this fungus. Among them are molecules which mediate adhesion to and invasi...

  18. Controlling Subsurface Fractures and Fluid Flow: A Basic Research Agenda

    Energy Technology Data Exchange (ETDEWEB)

    Pyrak-Nolte, Laura J [Purdue Univ., West Lafayette, IN (United States); DePaolo, Donald J. [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Univ. of California, Berkeley, CA (United States); Pietraß, Tanja [USDOE Office of Science, Washington, DC (United States)

    2015-05-22

    From beneath the surface of the earth, we currently obtain about 80-percent of the energy our nation consumes each year. In the future we have the potential to generate billions of watts of electrical power from clean, green, geothermal energy sources. Our planet’s subsurface can also serve as a reservoir for storing energy produced from intermittent sources such as wind and solar, and it could provide safe, long-term storage of excess carbon dioxide, energy waste products and other hazardous materials. However, it is impossible to underestimate the complexities of the subsurface world. These complexities challenge our ability to acquire the scientific knowledge needed for the efficient and safe exploitation of its resources. To more effectively harness subsurface resources while mitigating the impacts of developing and using these resources, the U.S. Department of Energy established SubTER – the Subsurface Technology and Engineering RD&D Crosscut team. This DOE multi-office team engaged scientists and engineers from the national laboratories to assess and make recommendations for improving energy-related subsurface engineering. The SubTER team produced a plan with the overall objective of “adaptive control of subsurface fractures and fluid flow.”This plan revolved around four core technological pillars—Intelligent Wellbore Systems that sustain the integrity of the wellbore environment; Subsurface Stress and Induced Seismicity programs that guide and optimize sustainable energy strategies while reducing the risks associated with subsurface injections; Permeability Manipulation studies that improve methods of enhancing, impeding and eliminating fluid flow; and New Subsurface Signals that transform our ability to see into and characterize subsurface systems. The SubTER team developed an extensive R&D plan for advancing technologies within these four core pillars and also identified several areas where new technologies would require additional basic research

  19. Multiplex detection of agricultural pathogens

    Science.gov (United States)

    Siezak, Thomas R.; Gardner, Shea; Torres, Clinton; Vitalis, Elizabeth; Lenhoff, Raymond J.

    2013-01-15

    Described are kits and methods useful for detection of agricultural pathogens in a sample. Genomic sequence information from agricultural pathogens was analyzed to identify signature sequences, e.g., polynucleotide sequences useful for confirming the presence or absence of a pathogen in a sample. Primer and probe sets were designed and optimized for use in a PCR based, multiplexed Luminex assay and/or an array assay to successfully identify the presence or absence of pathogens in a sample.

  20. Subsurface transport with emphasis on hydrology: research needs. Subsurface Transport Program

    International Nuclear Information System (INIS)

    Zachara, J.M.; Wildung, R.E.

    1982-03-01

    A number of energy technologies presently in operation or under development generate solid wastes in large quantities as a major byproduct. These wastes will, for the most part, be disposed to the ground in landfills or inactive mine sites. Although the waste materials differ significantly among technologies, most contain residual, water-soluble chemical components which are of ecological and human health concern. Thus, in ground disposal may have a significant long-term impact on water supplies and human health if not properly conducted. With the growing magnitude of solid waste disposal operations, it becomes imperative to establish common ground between technologies such that research in this complex area can be efficiently managed to benefit a variety of users. This report develops the concept of multitechnology or generic research in subsurface transport with emphasis on hydrogeochemistry. Initially, a generic research approach was developed independent of waste characteristics. This approach both identified and prioritized the research information or experimentation and data management tools (models) required to resolve major technical concerns for in ground disposal. Waste characteristics were then evaluated to identify the common, cross-technology information needs. This evaluation indicated that solid wastes from energy producing technologies have physiocochemical properties in common which serve as a useful basis for identification of fundamental, generic research needs. Priority research projects are suggested for addressing contaminant identification, solubilization, transformation and transport. 38 references, 3 tables

  1. Subsurface ecosystem resilience: long-term attenuation of subsurface contaminants supports a dynamic microbial community

    Energy Technology Data Exchange (ETDEWEB)

    Yagi, J.M.; Neuhauser, E.F.; Ripp, J.A.; Mauro, D.M.; Madsen, E.L. [Cornell University, Ithaca, NY (United States). Dept. of Microbiology

    2010-01-15

    The propensity for groundwater ecosystems to recover from contamination by organic chemicals (in this case, coal-tar waste) is of vital concern for scientists and engineers who manage polluted sites. The microbially mediated cleanup processes are also of interest to ecologists because they are an important mechanism for the resilience of ecosystems. In this study we establish the long-term dynamic nature of a coal-tar waste-contaminated site and its microbial community. We present 16 years of chemical monitoring data, tracking responses of a groundwater ecosystem to organic contamination (naphthalene, xylenes, toluene, 2-methyl naphthalene and acenaphthylene) associated with coal-tar waste. In addition, we analyzed small-subunit (SSU) ribosomal RNA (rRNA) genes from two contaminated wells at multiple time points over a 2-year period. Principle component analysis of community rRNA fingerprints (terminal-restriction fragment length polymorphism (T-RFLP)) showed that the composition of native microbial communities varied temporally, yet remained distinctive from well to well. After screening and analysis of 1178 cloned SSU rRNA genes from Bacteria, Archaea and Eukarya, we discovered that the site supports a robust variety of eukaryotes (for example, alveolates (especially anaerobic and predatory ciliates), stramenopiles, fungi, even the small metazoan flatworm, Suomina) that are absent from an uncontaminated control well. This study links the dynamic microbial composition of a contaminated site with the long-term attenuation of its subsurface contaminants.

  2. Reduction of periodontal pathogens adhesion by antagonistic strains

    NARCIS (Netherlands)

    Van Hoogmoed, C. G.; Geertsema-Doornbusch, G. I.; Teughels, W.; Quirynen, M.; Busscher, H. J.; Van der Mei, H. C.

    Introduction: Periodontitis results from a shift in the subgingival micro. ora into a more pathogenic direction with Porphyromonas gingivalis, Prevotella intermedia, and Actinobacillus actinomycetemcomitans considered as periodontopathogens. In many cases, treatment procures only a temporary shift

  3. Subsurface irrigation of potato crop (Solanum tuberosum ssp. Andigena) in Suka Kollus with different drainage systems

    Science.gov (United States)

    Serrano-Coronel, Genaro; Chipana-Rivera, René; Fátima Moreno-Pérez, María; Roldán-Cañas, José

    2016-04-01

    Among the most important hydraulic structures of pre-Hispanic ancestral technology developed in the Andean region, we find the suka kollus, aymara word, called also waru waru, en quechua or raised fields, in English. They are raised platforms surrounded by water canals that irrigate subsurface, but also have the function of draining, to deal with floods because they are surrounding Lake Titicaca. They also have the property of generating a thermoregulatory effect to crops, depending on the configuration of the channels and platforms. Such agro-ecosystems are being abandoned, however, if properly addressed crop management and some drainage canals are replaced by underground drains for increased crop area could be very useful in enabling marginal soils affected by salts and / or excess water. For these reasons, the objective of this study was to evaluate the subsurface irrigation in the potato crop in suka kollus under a system of surface drainage, and mixed drainage (surface and subsurface). The study was conducted in marginal soils of Kallutaca area, located 30 km from the city of La Paz, Bolivia, at a height of 3892 m.a.s.l. The cultivation of the potato (Solanum tuberosum ssp. Andigena) was used. Four treatments were tested with different widths of the platforms: T1 (Control) with drainage through channels; T2 (replacing a channel by a drain); T3 (replacing two channels by two drains); T4 (replacing three channels by three drains). The flow of water into the soil from the water table was predominantly upward, except during periods of high rainfall. In terms of treatments, the flow in T1 was higher, mainly at weeks 8 to 11 after seedling emergence, coinciding with the phenological phases of flowering and at the beginning of the tuber ripening. It was followed by T3, T2 and T4 treatments, respectively. Tuber yield, if one considers that the channels detract arable land, was higher in the T3 treatment,16.4 Mg / ha, followed by T2 treatment, 15.2 Mg / ha, T1

  4. Tratamento de sementes com fungicidas relacionado com o controle de patógenos e rendimento de milho Seed treatment with fungicides related to the control of pathogens and corn yield

    Directory of Open Access Journals (Sweden)

    Wilmar Cório da Luz

    1998-12-01

    Full Text Available Os experimentos de milho foram realizados em la boratório; em casa de vegetação e a campo, em Passo Fundo, Rio Grande do Sul, sob presença natural de patógenos, nos anos de 1994 e 1995. Os híbridos usados foram: Braskaib XL 561 em 1994 e Braskaib XL 330 em 1995. Os tratamentos com diferentes concentrações de ingrediente ativo, formulações e doses para 100kg de sementes foram: testemunha; thiram 60 P + iprodione 20 P (150 + 50g; thiram 35 PM + carboxin 35 PM + metalaxyl 35 PM (150 + 700 + 100g, em 1994, e (thiram + carboxin 20 SC (200ml + metalaxyl 35 PM (100g em 1995; thiram 35 PM + carboxin 35 PM (100 + 100g, em 1994 e (thiram + carboxin 20 SC (200ml em 1995; thiram 70 P (150g; imawlil 5 L (150ml; captem 75 P + thiabendawle 10 P (150 + 100g: triadimenol 25 P (160g; captan 75 PM (150g e metalaxyl 35 PM (100g, em 1994 e (50g, em 1995. Os fungicidas foram aplicados misturan do-se cada produto com 250g de sementes dentro de um saco de plástico e agitando-o manualmente por cinco minutos. Todos os tratamentos químicos apresentaram eficiência no controle de Fusarium moniliforme, entretanto metalaxyl e captan em geral foram menos eficientes. Com exceção de metalaxyl, todos os produtos químicos controlaram Cephalosporium acremonium spp. Captan foi menos eficiente que os tratamentos que apresentaram controle em 1994 e apresentou eficiência semelhante a triadime nol e captan + thiabendawle para este fungo, em 1995. Todos os tratamentos, exceto o metalaxyl e o captan (em 1995, no campo aumentaram a emergência das plantas. Thiran e suas misturas também promoveram melhor controle de Penicillium spp. e de Aspergilius spp. e proporcionaram aumentos de rendimento de 13,5% a 14,8% em 1994 e 9,8% a 13,5% em 1995.Experiments were conducted in laboratory, green house and in the field in Passo Fundo, State of Rio Grande do Sul, Braül, under natural presence of pathogens. Com hybrids used were: Braskaib XL 561, and Braskaib XL 330 in 1994 and 1995

  5. Two dimentional modeling of subsurface structure over upper Benue ...

    African Journals Online (AJOL)

    The subsurface lithology obtained from 2D modelling of the residual field showed the presence of two lithological units. The sedimentary rock unit underlined by the basement rock consists of shales, sandstones, limestones, siltstones, clay and non-marine facies. The Basement rock units were composed of pegmatite, ...

  6. Quantitative subsurface analysis using frequency modulated thermal wave imaging

    Science.gov (United States)

    Subhani, S. K.; Suresh, B.; Ghali, V. S.

    2018-01-01

    Quantitative depth analysis of the anomaly with an enhanced depth resolution is a challenging task towards the estimation of depth of the subsurface anomaly using thermography. Frequency modulated thermal wave imaging introduced earlier provides a complete depth scanning of the object by stimulating it with a suitable band of frequencies and further analyzing the subsequent thermal response using a suitable post processing approach to resolve subsurface details. But conventional Fourier transform based methods used for post processing unscramble the frequencies with a limited frequency resolution and contribute for a finite depth resolution. Spectral zooming provided by chirp z transform facilitates enhanced frequency resolution which can further improves the depth resolution to axially explore finest subsurface features. Quantitative depth analysis with this augmented depth resolution is proposed to provide a closest estimate to the actual depth of subsurface anomaly. This manuscript experimentally validates this enhanced depth resolution using non stationary thermal wave imaging and offers an ever first and unique solution for quantitative depth estimation in frequency modulated thermal wave imaging.

  7. Control and optimzation of sub-surface flow

    NARCIS (Netherlands)

    Jansen, J.D.

    2013-01-01

    Controlling the flow of fluids (e.g. water, oil, natural gas or CO2) in subsurface porous media is a technical process with many mathematical challenges. The underlying physics can be described with coupled nearly-elliptic and nearly-hyperbolic nonlinear partial differential equations, which require

  8. A Theoretical Study of Subsurface Drainage Model Simulation of ...

    African Journals Online (AJOL)

    A three-dimensional variable-density groundwater flow model, the SEAWAT model, was used to assess the influence of subsurface drain spacing, evapotranspiration and irrigation water quality on salt concentration at the base of the root zone, leaching and drainage in salt affected irrigated land. The study was carried out ...

  9. Subsurface Agricultural Irrigation Drainage: The Need for Regulation

    Science.gov (United States)

    A. Dennis Lemly

    1993-01-01

    Subsurface drainage resulting from irrigated agriculture is a toxic threat to fish and wildlife resources throughout the western United States. Studies by the U.S. Department of the Interior show that migratory waterfowl have been poisoned by drainwater contaminants on at least six national wildlife refuges. Allowing this poisoning to continue is a violation of the...

  10. Strategic planning features of subsurface management in Kemerovo Oblast

    Science.gov (United States)

    Romanyuk, V.; Grinkevich, A.; Akhmadeev, K.; Pozdeeva, G.

    2016-09-01

    The article discusses the strategic planning features of regional development based on the production and subsurface management in Kemerovo Oblast. The modern approach - SWOT analysis was applied to assess the regional development strategy. The estimation of regional development plan implementation was given for the foreseeable future.

  11. Nematoda from the terrestrial deep subsurface of South Africa

    NARCIS (Netherlands)

    Borgonie, G.; García-Moyano, A.; Litthauer, D.; Bert, W.; Bester, A.; Heerden, van E.; Möller, C.; Erasmus, M.; Onstott, T.C.

    2011-01-01

    Since its discovery over two decades ago, the deep subsurface biosphere has been considered to be the realm of single-cell organisms, extending over three kilometres into the Earth’s crust and comprising a significant fraction of the global biosphere1–4. The constraints of temperature, energy,

  12. Heating subsurface formations by oxidizing fuel on a fuel carrier

    Science.gov (United States)

    Costello, Michael; Vinegar, Harold J.

    2012-10-02

    A method of heating a portion of a subsurface formation includes drawing fuel on a fuel carrier through an opening formed in the formation. Oxidant is supplied to the fuel at one or more locations in the opening. The fuel is combusted with the oxidant to provide heat to the formation.

  13. Feasibility study of tank leakage mitigation using subsurface barriers

    Energy Technology Data Exchange (ETDEWEB)

    Treat, R.L.; Peters, B.B.; Cameron, R.J.; McCormak, W.D.; Trenkler, T.; Walters, M.F. [Ensearch Environmental, Inc. (United States); Rouse, J.K.; McLaughlin, T.J. [Bovay Northwest, Inc., Richland, WA (United States); Cruse, J.M. [Westinghouse Hanford Co., Richland, WA (United States)

    1994-09-21

    The US Department of Energy (DOE) has established the Tank Waste Remediation System (TWRS) to satisfy manage and dispose of the waste currently stored in the underground storage tanks. The retrieval element of TWRS includes a work scope to develop subsurface impermeable barriers beneath SSTs. The barriers could serve as a means to contain leakage that may result from waste retrieval operations and could also support site closure activities by facilitating cleanup. Three types of subsurface barrier systems have emerged for further consideration: (1) chemical grout, (2) freeze walls, and (3) desiccant, represented in this feasibility study as a circulating air barrier. This report contains analyses of the costs and relative risks associated with combinations retrieval technologies and barrier technologies that from 14 alternatives. Eight of the alternatives include the use of subsurface barriers; the remaining six nonbarrier alternative are included in order to compare the costs, relative risks and other values of retrieval with subsurface barriers. Each alternative includes various combinations of technologies that can impact the risks associated with future contamination of the groundwater beneath the Hanford Site to varying degrees. Other potential risks associated with these alternatives, such as those related to accidents and airborne contamination resulting from retrieval and barrier emplacement operations, are not quantitatively evaluated in this report.

  14. Feasibility study of tank leakage mitigation using subsurface barriers

    International Nuclear Information System (INIS)

    Treat, R.L.; Peters, B.B.; Cameron, R.J.; McCormak, W.D.; Trenkler, T.; Walters, M.F.; Rouse, J.K.; McLaughlin, T.J.; Cruse, J.M.

    1994-01-01

    The US Department of Energy (DOE) has established the Tank Waste Remediation System (TWRS) to satisfy manage and dispose of the waste currently stored in the underground storage tanks. The retrieval element of TWRS includes a work scope to develop subsurface impermeable barriers beneath SSTs. The barriers could serve as a means to contain leakage that may result from waste retrieval operations and could also support site closure activities by facilitating cleanup. Three types of subsurface barrier systems have emerged for further consideration: (1) chemical grout, (2) freeze walls, and (3) desiccant, represented in this feasibility study as a circulating air barrier. This report contains analyses of the costs and relative risks associated with combinations retrieval technologies and barrier technologies that from 14 alternatives. Eight of the alternatives include the use of subsurface barriers; the remaining six nonbarrier alternative are included in order to compare the costs, relative risks and other values of retrieval with subsurface barriers. Each alternative includes various combinations of technologies that can impact the risks associated with future contamination of the groundwater beneath the Hanford Site to varying degrees. Other potential risks associated with these alternatives, such as those related to accidents and airborne contamination resulting from retrieval and barrier emplacement operations, are not quantitatively evaluated in this report

  15. 10 CFR 39.45 - Subsurface tracer studies.

    Science.gov (United States)

    2010-01-01

    ... NUCLEAR REGULATORY COMMISSION LICENSES AND RADIATION SAFETY REQUIREMENTS FOR WELL LOGGING Equipment § 39.45 Subsurface tracer studies. (a) The licensee shall require all personnel handling radioactive tracer material to use protective gloves and, if required by the license, other protective clothing and...

  16. Investigation of the subsurface features of the basement complex of ...

    African Journals Online (AJOL)

    3D seismic reflection survey was recently carried out within the Zaria area of the basement complex of northern Nigeria, in order to investigate the complexity of the subsurface features within the basement. The geology of the survey area was characterized by gneisses and low grade meta-sedimentary rocks that form the ...

  17. Investigation of the near subsurface using acoustic to seismic coupling

    Science.gov (United States)

    Agricultural, hydrological and civil engineering applications have realized a need for information of the near subsurface over large areas. In order to obtain this spatially distributed data over such scales, the measurement technique must be highly mobile with a short acquisition time. Therefore, s...

  18. Uranium Biomineralization by Natural Microbial Phosphatase Activities in the Subsurface

    Energy Technology Data Exchange (ETDEWEB)

    Sobecky, Patricia A. [Univ. of Alabama, Tuscaloosa, AL (United States)

    2015-04-06

    In this project, inter-disciplinary research activities were conducted in collaboration among investigators at The University of Alabama (UA), Georgia Institute of Technology (GT), Lawrence Berkeley National Laboratory (LBNL), Brookhaven National Laboratory (BNL), the DOE Joint Genome Institute (JGI), and the Stanford Synchrotron Radiation Light source (SSRL) to: (i) confirm that phosphatase activities of subsurface bacteria in Area 2 and 3 from the Oak Ridge Field Research Center result in solid U-phosphate precipitation in aerobic and anaerobic conditions; (ii) investigate the eventual competition between uranium biomineralization via U-phosphate precipitation and uranium bioreduction; (iii) determine subsurface microbial community structure changes of Area 2 soils following organophosphate amendments; (iv) obtain the complete genome sequences of the Rahnella sp. Y9-602 and the type-strain Rahnella aquatilis ATCC 33071 isolated from these soils; (v) determine if polyphosphate accumulation and phytate hydrolysis can be used to promote U(VI) biomineralization in subsurface sediments; (vi) characterize the effect of uranium on phytate hydrolysis by a new microorganism isolated from uranium-contaminated sediments; (vii) utilize positron-emission tomography to label and track metabolically-active bacteria in soil columns, and (viii) study the stability of the uranium phosphate mineral product. Microarray analyses and mineral precipitation characterizations were conducted in collaboration with DOE SBR-funded investigators at LBNL. Thus, microbial phosphorus metabolism has been shown to have a contributing role to uranium immobilization in the subsurface.

  19. Martian sub-surface ionising radiation: biosignatures and geology

    Directory of Open Access Journals (Sweden)

    J. M. Ward

    2007-07-01

    Full Text Available The surface of Mars, unshielded by thick atmosphere or global magnetic field, is exposed to high levels of cosmic radiation. This ionising radiation field is deleterious to the survival of dormant cells or spores and the persistence of molecular biomarkers in the subsurface, and so its characterisation is of prime astrobiological interest. Here, we present modelling results of the absorbed radiation dose as a function of depth through the Martian subsurface, suitable for calculation of biomarker persistence. A second major implementation of this dose accumulation rate data is in application of the optically stimulated luminescence technique for dating Martian sediments.

    We present calculations of the dose-depth profile in the Martian subsurface for various scenarios: variations of surface composition (dry regolith, ice, layered permafrost, solar minimum and maximum conditions, locations of different elevation (Olympus Mons, Hellas basin, datum altitude, and increasing atmospheric thickness over geological history. We also model the changing composition of the subsurface radiation field with depth compared between Martian locations with different shielding material, determine the relative dose contributions from primaries of different energies, and discuss particle deflection by the crustal magnetic fields.

  20. Seismic characterisation of subsurface structural features of parts of ...

    African Journals Online (AJOL)

    A total of thirty-four migrated 2D seismic reflection lines and two composite well logs have been interpreted with a view to unravel the subsurface geological ... The interpretation procedure includes horizon identification, fault mapping, timing of horizons at selected shot points, posting of times, time-depth conversion and ...

  1. Terahertz imaging for subsurface investigation of art paintings

    Science.gov (United States)

    Locquet, A.; Dong, J.; Melis, M.; Citrin, D. S.

    2017-08-01

    Terahertz (THz) reflective imaging is applied to the stratigraphic and subsurface investigation of oil paintings, with a focus on the mid-20th century Italian painting, `After Fishing', by Ausonio Tanda. THz frequency-wavelet domain deconvolution, which is an enhanced deconvolution technique combining frequency-domain filtering and stationary wavelet shrinkage, is utilized to resolve the optically thin paint layers or brush strokes. Based on the deconvolved terahertz data, the stratigraphy of the painting including the paint layers is reconstructed and subsurface features are clearly revealed. Specifically, THz C-scans and B-scans are analyzed based on different types of deconvolved signals to investigate the subsurface features of the painting, including the identification of regions with more than one paint layer, the refractive-index difference between paint layers, and the distribution of the paint-layer thickness. In addition, THz images are compared with X-ray images. The THz image of the thickness distribution of the paint exhibits a high degree of correlation with the X-ray transmission image, but THz images also reveal defects in the paperboard that cannot be identified in the X-ray image. Therefore, our results demonstrate that THz imaging can be considered as an effective tool for the stratigraphic and subsurface investigation of art paintings. They also open up the way for the use of non-ionizing THz imaging as a potential substitute for ionizing X-ray analysis in nondestructive evaluation of art paintings.

  2. A one-dimensional model of subsurface hillslope flow

    Science.gov (United States)

    Jason C. Fisher

    1997-01-01

    Abstract - A one-dimensional, finite difference model of saturated subsurface flow within a hillslope was developed. The model uses rainfall, elevation data, a hydraulic conductivity, and a storage coefficient to predict the saturated thickness in time and space. The model was tested against piezometric data collected in a swale located in the headwaters of the North...

  3. The effects of fire on subsurface archaeological materials [Chapter 7

    Science.gov (United States)

    Elizabeth A. Oster; Samantha Ruscavage-Barz; Michael L. Elliott

    2012-01-01

    In this chapter, we concentrate on the effects of fire on subsurface archaeological deposits: the matrix containing post-depositional fill, artifacts, ecofactual data, dating samples, and other cultural and noncultural materials. In order to provide a context for understanding these data, this paper provides a summary of previous research about the potential effects of...

  4. Modelling near subsurface temperature with mixed type boundary ...

    Indian Academy of Sciences (India)

    geothermal data to extract both climate and groundwater flow signals. 1. Introduction. There is great interest to know past climate, especially to infer any anthropogenic signals in present climate by inter-comparison. The obser- vations of subsurface thermal regime in boreholes have been used to infer earth's thermal history.

  5. Review of potential subsurface permeable barrier emplacement and monitoring technologies

    Energy Technology Data Exchange (ETDEWEB)

    Riggsbee, W.H.; Treat, R.L.; Stansfield, H.J.; Schwarz, R.M. [Ebasco Environmental, Richland, WA (United States); Cantrell, K.J. [Pacific Northwest Lab., Richland, WA (United States); Phillips, S.J. [Westinghouse Hanford Co., Richland, WA (United States)

    1994-02-01

    This report focuses on subsurface permeable barrier technologies potentially applicable to existing waste disposal sites. This report describes candidate subsurface permeable barriers, methods for emplacing these barriers, and methods used to monitor the barrier performance. Two types of subsurface barrier systems are described: those that apply to contamination.in the unsaturated zone, and those that apply to groundwater and to mobile contamination near the groundwater table. These barriers may be emplaced either horizontally or vertically depending on waste and site characteristics. Materials for creating permeable subsurface barriers are emplaced using one of three basic methods: injection, in situ mechanical mixing, or excavation-insertion. Injection is the emplacement of dissolved reagents or colloidal suspensions into the soil at elevated pressures. In situ mechanical mixing is the physical blending of the soil and the barrier material underground. Excavation-insertion is the removal of a soil volume and adding barrier materials to the space created. Major vertical barrier emplacement technologies include trenching-backfilling; slurry trenching; and vertical drilling and injection, including boring (earth augering), cable tool drilling, rotary drilling, sonic drilling, jetting methods, injection-mixing in drilled holes, and deep soil mixing. Major horizontal barrier emplacement technologies include horizontal drilling, microtunneling, compaction boring, horizontal emplacement, longwall mining, hydraulic fracturing, and jetting methods.

  6. Physico-chemical and Mineralogical Characterisation of Subsurface ...

    African Journals Online (AJOL)

    Studies were carried out on subsurface sediments obtained around the Gaborone landfill area Botswana, in order to characterize their mineralogy and physico-chemistry, appraise any contaminant inputs from the landfill and assess their ability to attenuate contaminants from the landfill. Physico-chemical properties ...

  7. 3-D subsurface geoelectrical resistivity imaging of contaminant ...

    African Journals Online (AJOL)

    Electrical Resistivity Tomography (ERT) was used to map and detect the subsurface contaminant plumes from the cassava effluents in the various cassavas processing mill in Ozalla Area of Edo North, Edo State, Nigeria. The result from the 3D resistivity images shows clearly the distribution of the plumes from all the profile ...

  8. Mapping buried nanostructures using subsurface ultrasonic resonance force microscopy

    NARCIS (Netherlands)

    Es, M.H. van; Mohtashami, A.; Thijssen, R.M.T.; Piras, D.; Neer, P.L.M.J. van; Sadeghian, H.

    2018-01-01

    Nondestructive subsurface nanoimaging of buried nanostructures is considered to be extremely challeng- ing and is essential for the reliable manufacturing of nanotechnology products such as three-dimensional (3D) transistors, 3D NAND memory, and future quantum electronics. In scanning probe

  9. Uranium Biomineralization by Natural Microbial Phosphatase Activities in the Subsurface

    International Nuclear Information System (INIS)

    Sobecky, Patricia A.

    2015-01-01

    In this project, inter-disciplinary research activities were conducted in collaboration among investigators at The University of Alabama (UA), Georgia Institute of Technology (GT), Lawrence Berkeley National Laboratory (LBNL), Brookhaven National Laboratory (BNL), the DOE Joint Genome Institute (JGI), and the Stanford Synchrotron Radiation Light source (SSRL) to: (i) confirm that phosphatase activities of subsurface bacteria in Area 2 and 3 from the Oak Ridge Field Research Center result in solid U-phosphate precipitation in aerobic and anaerobic conditions; (ii) investigate the eventual competition between uranium biomineralization via U-phosphate precipitation and uranium bioreduction; (iii) determine subsurface microbial community structure changes of Area 2 soils following organophosphate amendments; (iv) obtain the complete genome sequences of the Rahnella sp. Y9-602 and the type-strain Rahnella aquatilis ATCC 33071 isolated from these soils; (v) determine if polyphosphate accumulation and phytate hydrolysis can be used to promote U(VI) biomineralization in subsurface sediments; (vi) characterize the effect of uranium on phytate hydrolysis by a new microorganism isolated from uranium-contaminated sediments; (vii) utilize positron-emission tomography to label and track metabolically-active bacteria in soil columns, and (viii) study the stability of the uranium phosphate mineral product. Microarray analyses and mineral precipitation characterizations were conducted in collaboration with DOE SBR-funded investigators at LBNL. Thus, microbial phosphorus metabolism has been shown to have a contributing role to uranium immobilization in the subsurface.

  10. The Mojave Subsurface Bio-Geochemistry Explorer (MOSBE)

    Science.gov (United States)

    Guerrero, J.; Beegle, L.; Abbey, W.; Bhartia, R.; Kounaves, S.; Russell, M.; Towles, D.

    2012-01-01

    The MOSBE Team has developed a terrestrial field campaign to explore two subsurface biological habitats under the Mojave Desert. This field campaign will not only help us understand terrestrial desert biology, but also will develop methodologies and strategies for potential future Mars missions that would seek to explore the Martian subsurface. We have proposed to the ASTEP program to integrate a suite of field demonstrated instruments with a 20 m subsurface drill as a coherent unit, the Mojave Subsurface Bio-geochemistry Explorer. The ATK Space Modular Planetary Drill System (MPDS) requires no drilling fluid, which allows aseptic sampling, can penetrate lithic ground up to 20 meters of depth, and utilizes less than 100 Watts throughout the entire depth. The drill has been developed and demonstrated in field testing to a depth of 10 meters in Arizona, December 2002. In addition to caching a continuous core throughout the drilling depth, it also generates and caches cuttings and fines that are strata-graphically correlated with the core. As a core segment is brought to the surface, it will be analyzed for texture and structure by a color microscopic imager and for relevant chemistry and mineralogy with a UV fluorescence/Raman spectrometer. Organic and soluble ionic species will be identified through two instruments -- a microcapillary electrophoresis, and an ion trap mass spectrometer that have been developed under PIDDP, ASTID and MIDP funding.

  11. Evaluation of the Dutch subsurface geoportal: What lies beneath?

    NARCIS (Netherlands)

    Lance, K.T.; Georgiadou, Y.; Bregt, A.K.

    2011-01-01

    This paper focuses on a geoportal from a “what lies beneath” perspective. It analyses processes of budgeting, planning, monitoring, performance measurement, and reporting of the national initiative titled Digital Information of the Dutch Subsurface (known by its Dutch acronym, DINO). The study is

  12. 3-D Subsurface Geoelectrical Resistivity Imaging of Contaminant ...

    African Journals Online (AJOL)

    ADOWIE PERE

    ABSTRACT: Electrical Resistivity Tomography (ERT) was used to map and detect the subsurface contaminant plumes from the cassava effluents in the various cassavas processing mill in Ozalla Area of Edo North, Edo State, Nigeria. The result from the 3D resistivity images shows clearly the distribution of the plumes from ...

  13. Application of GPR in the study of shallow subsurface sedimentary ...

    Indian Academy of Sciences (India)

    image the sedimentary structures and depositional architecture in the shallow subsurface. Correctly processed radar profiles have been used success- fully to construct the radar stratigraphy in both, ancient and modern sand bodies (Jol and Smith. 1991; Gawthorpe et al 1993). The use of GPR in sedimentology requires ...

  14. Modelling near subsurface temperature with mixed type boundary ...

    Indian Academy of Sciences (India)

    available. We have developed such a thermal model of near subsurface region which includes both heat .... Such a boundary condition has been used in hydrother- mal studies (Heasler et al. 1990). In case, the heat transfer coefficient H tends to infinity, soil temper- ..... Davis M G, Harris R N and Chapman D H 2010 Repeat.

  15. Monitoring subsurface coal fires in Jharia coalfield using ...

    Indian Academy of Sciences (India)

    Coal fires in the Jharia coalfield pose a serious threat to India's vital resource of primary coking coal and the regional environment. In order to undertake effective preventative measures, it is critical to detect the occurrence of subsurface coal fires and to monitor the extent of the existing ones. In this study, Differential ...

  16. Subsurface analysis of semiconductor structures with helium ion microscopy

    NARCIS (Netherlands)

    van Gastel, Raoul; Hlawacek, G.; Zandvliet, Henricus J.W.; Poelsema, Bene

    2012-01-01

    We have used helium ion microscopy to directly track the subsurface diffusion of Pd through a Si stack in a non-invasive manner. The imaging and analysis of semiconductor structures along a direction perpendicular to the substrate is traditionally performed by making cross sections of a sample and

  17. SUBSURFACE PROPERTY RIGHTS: IMPLICATIONS FOR GEOLOGIC CO2 SEQUESTRATION

    Science.gov (United States)

    The chapter discusses subsurface property rights as they apply to geologic sequestration (GS) of carbon dioxide (CO2). GS projects inject captured CO2 into deep (greater than ~1 km) geologic formations for the explicit purpose of avoiding atmospheric emission of CO2. Because of t...

  18. SUBSURFACE PROPERTY RIGHTS: IMPLICATIONS FOR GEOLOGIC CO2 SEQUESTRATION (PRESENTATION)

    Science.gov (United States)

    The paper discusses subsurface property rights as they apply to geologic sequestration (GS) of carbon dioxide (CO2). GS projects inject captured CO2 into deep (greater than ~1 km) geologic formations for the explicit purpose of avoiding atmospheric emission of CO2. Because of the...

  19. SUBSURFACE PROPERTY RIGHTS: IMPLICATIONS FOR GEOLOGIC CO2 STORAGE

    Science.gov (United States)

    The paper discusses subsurface property rights as they apply to geologic sequestration (GS) of carbon dioxide (CO2). GS projects inject captured CO2 into deep (greater than ~1 km) geologic formations for the explicit purpose of avoiding atmospheric emission of CO2. Because of the...

  20. A neural network model for non invasive subsurface stratigraphic identification

    International Nuclear Information System (INIS)

    Sullivan, John M. Jr.; Ludwig, Reinhold; Lai Qiang

    2000-01-01

    Ground-Penetrating Radar (GRP) is a powerful tool to examine the stratigraphy below ground surface for remote sensing. Increasingly GPR has also found applications in microwave NDE as an interrogation tool to assess dielectric layers. Unfortunately, GPR data is characterized by a high degree of uncertainty and natural physical ambiguity. Robust decomposition routines are sparse for this application. We have developed a hierarchical set of neural network modules which split the task of layer profiling into consecutive stages. Successful GPR profiling of the subsurface stratigraphy is of key importance for many remote sensing applications including microwave NDE. Neural network modules were designed to accomplish the two main processing goals of recognizing the 'subsurface pattern' followed by the identification of the depths of the subsurface layers like permafrost, groundwater table, and bedrock. We used an adaptive transform technique to transform raw GPR data into a small feature vector containing the most representative and discriminative features of the signal. This information formed the input for the neural network processing units. This strategy reduced the number of required training samples for the neural network by orders of magnitude. The entire processing system was trained using the adaptive transformed feature vector inputs and tested with real measured GPR data. The successful results of this system establishes the feasibility the feasibility of delineating subsurface layering nondestructively

  1. Subsurface ice structure analysis with longer wavelength sar tomography

    DEFF Research Database (Denmark)

    Banda, Francesco; Dall, Jørgen; Tebaldini, Stefano

    2013-01-01

    of longer wavelength SAR to retrieve information about ice flow and structure. In the present paper first results from processing of tomographic data for subsurface ice structure mapping are presented. The extent of signal penetration has been found to be of about 20-60 m, conditional on the different...

  2. Preliminary subsurface hydrologic considerations: Columbia River Plateau physiographic province

    International Nuclear Information System (INIS)

    Veatch, M.D.

    1979-01-01

    Subsurface hydrologic conditions in the Pacific Northwest are strongly controlled by the structural and stratigraphic framework of subregions. A significant portion of the Pacific Northwest is underlain by the Columbia River Plateau basalt sequence. This discussion is limited to hydrologic conditions as they relate to the Columbia River Plateau physiographic province and specifically to the Pasco Basin in the central part of the province

  3. Use of dewatered sludge as microbial inoculum of a subsurface ...

    African Journals Online (AJOL)

    Brown earth–based subsurface wastewater infiltration systems (SWISs) inoculated with/without dewatered sludge were constructed and operated under the same conditions to boost the application of SWIS in brown soil areas. Start-up period of SWIS with dewatered sludge was 28 days, 12 days shorter than that of SWIS ...

  4. Phylogenetic relationships among subsurface microorganisms. Project technical progress report

    Energy Technology Data Exchange (ETDEWEB)

    Nierzwicki-Bauer, S.A.

    1993-08-01

    The development of group-specific, 16S ribosomal RNA-targeted oligonucleotide hybridization probes for the rapid detection of specific types of subsurface microorganisms is described. Because portions of the 16S RRNA molecule are unique to particular organisms or groups, these unique sequences can serve as targets for hybridization probes with varied specificity. Target sequences for selected microbial groups have been identified by analysis of the available RRNA sequence data for subsurface microbes. Hybridization probes for these target sequences were produced and their effectiveness and specificity tested with RNA cell blot and in situ hybridizations. Selected probes were used to study phylogenetic relationships among subsurface microbes and to classify these organisms into the specific groups that the probes are designed to detect. To date, this work has been performed on the P24 and C10 borehole isolates from the Savannah River Site. The probes will also be used, with in situ hybridizations, to detect and monitor selected microbial groups in freshly collected subsurface samples and laboratory microcosms in collaboration with other investigators. In situ hybridizations permit detection of selected microbial types without the necessity to isolate and culture them in the laboratory.

  5. Application of sand and geotextile envelope in subsurface drip ...

    African Journals Online (AJOL)

    TUOYO

    2010-08-09

    Aug 9, 2010 ... Subsurface drip irrigation is a technology used for better management of irrigation water. This technique is more desirable in arid and semi-arid region, because of decreasing soil surface evaporation and more efficiency of irrigation system in comparison with the other irrigation systems. In addition, this ...

  6. Review of potential subsurface permeable barrier emplacement and monitoring technologies

    International Nuclear Information System (INIS)

    Riggsbee, W.H.; Treat, R.L.; Stansfield, H.J.; Schwarz, R.M.; Cantrell, K.J.; Phillips, S.J.

    1994-02-01

    This report focuses on subsurface permeable barrier technologies potentially applicable to existing waste disposal sites. This report describes candidate subsurface permeable barriers, methods for emplacing these barriers, and methods used to monitor the barrier performance. Two types of subsurface barrier systems are described: those that apply to contamination.in the unsaturated zone, and those that apply to groundwater and to mobile contamination near the groundwater table. These barriers may be emplaced either horizontally or vertically depending on waste and site characteristics. Materials for creating permeable subsurface barriers are emplaced using one of three basic methods: injection, in situ mechanical mixing, or excavation-insertion. Injection is the emplacement of dissolved reagents or colloidal suspensions into the soil at elevated pressures. In situ mechanical mixing is the physical blending of the soil and the barrier material underground. Excavation-insertion is the removal of a soil volume and adding barrier materials to the space created. Major vertical barrier emplacement technologies include trenching-backfilling; slurry trenching; and vertical drilling and injection, including boring (earth augering), cable tool drilling, rotary drilling, sonic drilling, jetting methods, injection-mixing in drilled holes, and deep soil mixing. Major horizontal barrier emplacement technologies include horizontal drilling, microtunneling, compaction boring, horizontal emplacement, longwall mining, hydraulic fracturing, and jetting methods

  7. Assessment of Subsurface Conditions in a Coastal Area of Lagos ...

    African Journals Online (AJOL)

    An integrated geophysical and geotechnical survey was carried out at Magodo Estate, Lagos, Nigeria. The buildings in this area are either sinking or intensively affected by severe cracks showing structural instability. The survey was aimed at characterizing the shallow subsurface in order to delineate features that may have ...

  8. Geophysical Monitoring of Two types of Subsurface Injection

    Science.gov (United States)

    Nano-scale particles of zero-valent iron (ZVI) were injected into the subsurface at the 100-D area of the DOE Hanford facility. The intent of this iron injection was to repair a gap in the existing in-situ redox manipulation barrier located at the site. A number of geophysical me...

  9. Thematic survey of subsurface drainage systems in the Czech Republic

    Czech Academy of Sciences Publication Activity Database

    Tlapáková, L.; Žaloudík, J.; Kolejka, Jaromír

    2016-01-01

    Roč. 13, č. 2 (2016), s. 55-65 ISSN 1744-5647 Institutional support: RVO:68145535 Keywords : subsurface drainage system * remote sensing * image interpretation * drainage recognition and mapping Subject RIV: DE - Earth Magnetism, Geodesy, Geography Impact factor: 2.174, year: 2016 http://www.tandfonline.com/doi/full/10.1080/17445647.2016.1259129?scroll=top&needAccess=true

  10. 75 FR 1276 - Requirements for Subsurface Safety Valve Equipment

    Science.gov (United States)

    2010-01-11

    ... Subsurface Safety Valve Equipment (API Spec 14A) into its regulations. The MMS is incorporating the Eleventh Edition of API Spec 14A because it updated the design validation and functional testing requirements... design verification and validation activities specified in the Eleventh Edition of API Spec14A, which has...

  11. Supercontinuum Light Sources for Hyperspectral Subsurface Laser Scattering

    DEFF Research Database (Denmark)

    Nielsen, Otto Højager Attermann; Dahl, Anders Lindbjerg; Larsen, Rasmus

    2011-01-01

    A materials structural and chemical composition influences its optical scattering properties. In this paper we investigate the use of subsurface laser scattering (SLS) for inferring structural and chemical information of food products. We have constructed a computer vision system based on a super...

  12. Yield response and economics of shallow subsurface drip irrigation systems

    Science.gov (United States)

    Field tests were conducted using shallow subsurface drip irrigation (S3DI) on cotton (Gossypium hirsutum, L.), corn (Zea mays, L.), and peanut (Arachis hypogeae, L.) in rotation to investigate yield potential and economic sustainability of this irrigation system technique over a six year period. Dri...

  13. The potential of imaging subsurface heterogeneities by local, natural earthquakes

    NARCIS (Netherlands)

    Nishitsuji, Y.; Doi, I.; Draganov, D.S.

    2014-01-01

    We have developed a new imaging technique of subsurface heterogeneities that uses Sp-waves from natural earthquakes. This technique can be used as a first screening tool in frontier exploration areas before conventional active exploration. Analyzing Sp-waves from 28 earthquakes (Mj 2.0 to 4.2)

  14. Application of sand and geotextile envelope in subsurface drip ...

    African Journals Online (AJOL)

    Subsurface drip irrigation is a technology used for better management of irrigation water. This technique is more desirable in arid and semi-arid region, because of decreasing soil surface evaporation and more efficiency of irrigation system in comparison with the other irrigation systems. Inaddition, this system is a safer way ...

  15. Identifying Heterogeneities in Subsurface Environment using the Level Set Method

    Energy Technology Data Exchange (ETDEWEB)

    Lei, Hongzhuan [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Lu, Zhiming [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Vesselinov, Velimir Valentinov [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

    2016-08-25

    These are slides from a presentation on identifying heterogeneities in subsurface environment using the level set method. The slides start with the motivation, then explain Level Set Method (LSM), the algorithms, some examples are given, and finally future work is explained.

  16. Pedological criteria for estimating the importance of subsurface ...

    African Journals Online (AJOL)

    E horizons formed in soils by reduction and eluviation are considered to be an indicator of subsurface lateral flow (SLF) between the A and B horizons – a hydrological process important in generating streamflow. There is, however, uncertainty in the interpretation of the hydropedological behaviour of some E horizons.

  17. The significance of the subsurface in urban renewal

    NARCIS (Netherlands)

    Hooimeijer, F.L.; Maring, Linda

    2018-01-01

    The subsurface is a technical space, the “engine room of the city,” that incorporates the vital functions of water and energy supply, communication systems, sewers and drainage. Natural systems too – crucial for stable, dry, cool and nature inclusive cities – are also largely dependent on the

  18. Quantifying Hyporheic Exchanges in a Large Scale River Reach Using Coupled 3-D Surface and Subsurface Computational Fluid Dynamics Simulations.

    Energy Technology Data Exchange (ETDEWEB)

    Hammond, Glenn Edward; Bao, J; Huang, M; Hou, Z; Perkins, W; Harding, S; Titzler, S; Ren, H; Thorne, P; Suffield, S; Murray, C; Zachara, J

    2017-03-01

    Hyporheic exchange is a critical mechanism shaping hydrological and biogeochemical processes along a river corridor. Recent studies on quantifying the hyporheic exchange were mostly limited to local scales due to field inaccessibility, computational demand, and complexity of geomorphology and subsurface geology. Surface flow conditions and subsurface physical properties are well known factors on modulating the hyporheic exchange, but quantitative understanding of their impacts on the strength and direction of hyporheic exchanges at reach scales is absent. In this study, a high resolution computational fluid dynamics (CFD) model that couples surface and subsurface flow and transport is employed to simulate hyporheic exchanges in a 7-km long reach along the main-stem of the Columbia River. Assuming that the hyporheic exchange does not affect surface water flow conditions due to its negligible magnitude compared to the volume and velocity of river water, we developed a one-way coupled surface and subsurface water flow model using the commercial CFD software STAR-CCM+. The model integrates the Reynolds-averaged Navier-Stokes (RANS) equation solver with a realizable κ-ε two-layer turbulence model, a two-layer all y+ wall treatment, and the volume of fluid (VOF) method, and is used to simulate hyporheic exchanges by tracking the free water-air interface as well as flow in the river and the subsurface porous media. The model is validated against measurements from acoustic Doppler current profiler (ADCP) in the stream water and hyporheic fluxes derived from a set of temperature profilers installed across the riverbed. The validated model is then employed to systematically investigate how hyporheic exchanges are influenced by surface water fluid dynamics strongly regulated by upstream dam operations, as well as subsurface structures (e.g. thickness of riverbed and subsurface formation layers) and hydrogeological properties (e.g. permeability). The results

  19. Subsurface Profile Mapping using 3-D Compressive Wave Imaging

    Directory of Open Access Journals (Sweden)

    Hazreek Z A M

    2017-01-01

    Full Text Available Geotechnical site investigation related to subsurface profile mapping was commonly performed to provide valuable data for design and construction stage based on conventional drilling techniques. From past experience, drilling techniques particularly using borehole method suffer from limitations related to expensive, time consuming and limited data coverage. Hence, this study performs subsurface profile mapping using 3-D compressive wave imaging in order to minimize those conventional method constraints. Field measurement and data analysis of compressive wave (p-wave, vp was performed using seismic refraction survey (ABEM Terraloc MK 8, 7 kg of sledgehammer and 24 units of vertical geophone and OPTIM (SeisOpt@Picker & SeisOpt@2D software respectively. Then, 3-D compressive wave distribution of subsurface studied was obtained using analysis of SURFER software. Based on 3-D compressive wave image analyzed, it was found that subsurface profile studied consist of three main layers representing top soil (vp = 376 – 600 m/s, weathered material (vp = 900 – 2600 m/s and bedrock (vp > 3000 m/s. Thickness of each layer was varied from 0 – 2 m (first layer, 2 – 20 m (second layer and 20 m and over (third layer. Moreover, groundwater (vp = 1400 – 1600 m/s starts to be detected at 2.0 m depth from ground surface. This study has demonstrated that geotechnical site investigation data related to subsurface profiling was applicable to be obtained using 3-D compressive wave imaging. Furthermore, 3-D compressive wave imaging was performed based on non destructive principle in ground exploration thus consider economic, less time, large data coverage and sustainable to our environment.

  20. Subsurface chlorophyll maxima in the north-western Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Sarma, V.V.; Aswanikumar, V.

    The depth profiles of phytoplankton pigments in the north-western Bay of Bengal are generally characterizEd. by a subsurface chlorophyll maximum. The occurrence of subsurface chlorophyll maxima is discussed in relation to other information on water...

  1. MICROBIAL ECOLOGY OF THE SUBSURFACE AT AN ABANDONED CREOSOTE WASTE SITE

    Science.gov (United States)

    The microbial ecology of pristine, slightly contaminated, and heavily contaminated subsurface materials, and four subsurface materials on the periphery of the plume at an abandoned creosote waste site was investigated. Except for the unsaturated zone of the heavily contaminated m...

  2. Pathogens distribution and drug sensitivity of chronic dacryocystitis

    Directory of Open Access Journals (Sweden)

    Yang-Yang Xie

    2014-10-01

    Full Text Available AIM: To analyze the pathogens and drug sensitivity of chronic dacryocystitis in order to provide evidence for clinical drug use.METHODS: Lacrimal secretion of 171 cases with chronic dacryocystitis was sampled for pathogenic bacteria culture identification and drug sensitivity test. Based on the results, the isolation rate of pathogens strains, the pathogens kind of chronic dacryoeystitis, main pathogens of chronic dacryocystitis, and sensitive drug for pathogens were analyzed.RESULTS: The isolation rate of pathogens strains was 76.61%(131 cases. The pathogens constituting the chronic dacryocystitis were predominantly gram-positive coccus,the percentage was 72.52%(95 cases, among which staphylococcus hominis occupied 27.48%(36 cases, staphylococcus epidermidis 16.79%(22 cases, streptococcus viridans 12.98%(17 cases. The majority of these bacteria were sensitive to cefoperazone-sulbactam, tobramycin, gentamicin and levofloxacin. For gram-positive coccus, cefoperazone-sulbactam, gentamicin and tobramycin were the most sensitive drug. For gram-negative bacilli, cefoperazone-sulbactam, tobramycin and levofloxacin were most sensitive drug.CONCLUSION: Staphylococcus hominis is the main pathogen of chronic dacryocystitis, tobramycin can be used as the first choice for local treatment of chronic dacryocystitis.

  3. Geosystem services:A concept in support of sustainable development of the subsurface

    NARCIS (Netherlands)

    van Ree, C.C.D.F.; van Beukering, P.J.H.

    2016-01-01

    Because functions of the subsurface are hidden from view, its important role in society is often taken for granted. Underground use in cities and subsurface resource extraction rapidly increase. Ensuring sustainability of the subsurface role requires balancing between exploitation and conservation,

  4. Subsurface Thermal Energy Storage for Improved Heating and Air Conditioning Efficiency

    Science.gov (United States)

    2016-11-21

    FINAL REPORT Subsurface Thermal Energy Storage for Improved Heating and Air Conditioning Efficiency ESTCP Project EW-201013 NOVEMBER 2016 Ronald...TITLE AND SUBTITLE Final Report. Subsurface Thermal Energy Storage for Improved 5a. CONTRACT NUMBER 10-C-0027-A Air Conditioning...This project involved a field demonstration of subsurface thermal energy storage for improving the geothermal heat pump air conditioning efficiency

  5. Integrated geomechanical modelling at TNO for assessement of deep subsurface risks

    NARCIS (Netherlands)

    Orlic, B.; Fokker, P.; Zijl, W.; Scheffers, B.

    2001-01-01

    Public authorities, E & P and the mining industry increasingly demand fundamental insight and accurate predictions on subsurface and surface deformation and damage due to exploitation of subsurface natural resources, and subsurface storage of energy residues (e.g. CO2). At this moment deformation is

  6. Colloid formation in groundwater by subsurface aeration: characterisation of the geo-colloids and their counterparts

    NARCIS (Netherlands)

    Wolthoorn, A.; Temminghoff, E.J.M.; Riemsdijk, van W.H.

    2004-01-01

    Subsurface aeration is used to oxidise Fe in situ in groundwater to make the water potable. In a groundwater system with pH > 7, subsurface aeration results in a non-mobile Fe precipitate and mobile Fe colloids. Since originally the goal of subsurface aeration is to remove Fe in situ, the

  7. 30 CFR 250.119 - Will MMS approve subsurface gas storage?

    Science.gov (United States)

    2010-07-01

    ... 30 Mineral Resources 2 2010-07-01 2010-07-01 false Will MMS approve subsurface gas storage? 250....119 Will MMS approve subsurface gas storage? The Regional Supervisor may authorize subsurface storage of gas on the OCS, on and off-lease, for later commercial benefit. To receive MMS approval you must...

  8. A technical investigation on tools and concepts for sustainable management of the subsurface in The Netherlands

    NARCIS (Netherlands)

    Griffioen, Jasper; van Wensem, Joke; Oomes, Justine L.M.; Barends, Frans; Breunese, Jaap; Bruining, Hans; Olsthoorn, Theo; Stams, Alfons J.M.; van der Stoel, Almer E.C.

    2014-01-01

    In response to increasing use of the subsurface, there is a need to modernise policies on sustainable use of the subsurface. This holds in particular for the densely populated Netherlands. We aimed to analyse current practice of subsurface management and the associated pressure points and to

  9. A technical investigation on tools and concepts for sustainable management of the subsurface in The Netherlands.

    NARCIS (Netherlands)

    Griffioen, J.; Wensem, van J.; Oomes, J.L.; Barends, F.; Breunese, J.; Bruining, H.; Olsthoorn, T.; Stams, A.J.M.; Stoel, van der A.E.

    2014-01-01

    In response to increasing use of the subsurface, there is a need to modernise policies on sustainable use of the subsurface. This holds in particular for the densely populated Netherlands. We aimed to analyse current practice of subsurface management and the associated pressure points and to

  10. Cryptosporidium Pathogenicity and Virulence

    Science.gov (United States)

    Bouzid, Maha; Chalmers, Rachel M.; Tyler, Kevin M.

    2013-01-01

    Cryptosporidium is a protozoan parasite of medical and veterinary importance that causes gastroenteritis in a variety of vertebrate hosts. Several studies have reported different degrees of pathogenicity and virulence among Cryptosporidium species and isolates of the same species as well as evidence of variation in host susceptibility to infection. The identification and validation of Cryptosporidium virulence factors have been hindered by the renowned difficulties pertaining to the in vitro culture and genetic manipulation of this parasite. Nevertheless, substantial progress has been made in identifying putative virulence factors for Cryptosporidium. This progress has been accelerated since the publication of the Cryptosporidium parvum and C. hominis genomes, with the characterization of over 25 putative virulence factors identified by using a variety of immunological and molecular techniques and which are proposed to be involved in aspects of host-pathogen interactions from adhesion and locomotion to invasion and proliferation. Progress has also been made in the contribution of host factors that are associated with variations in both the severity and risk of infection. Here we provide a review comprised of the current state of knowledge on Cryptosporidium infectivity, pathogenesis, and transmissibility in light of our contemporary understanding of microbial virulence. PMID:23297262

  11. Distribution and activity of hydrogenase enzymes in subsurface sediments

    Science.gov (United States)

    Adhikari, R.; Nickel, J.; Glombitza, C.; Spivack, A. J.; D'Hondt, S. L.; Kallmeyer, J.

    2013-12-01

    Metabolically active microbial communities are present in a wide range of subsurface environments. Techniques like enumeration of microbial cells, activity measurements with radiotracer assays and the analysis of porewater constituents are currently being used to explore the subsurface biosphere, alongside with molecular biological analyses. However, many of these techniques reach their detection limits due to low microbial activity and abundance. Direct measurements of microbial turnover not just face issues of insufficient sensitivity, they only provide information about a single specific process rather than an overall microbial activity. Since hydrogenase enzymes are intracellular and ubiquitous in subsurface microbial communities, the enzyme activity represents a measure of total activity of the entire microbial community. A hydrogenase activity assay could quantify total metabolic activity without having to identify specific processes. This would be a major advantage in subsurface biosphere studies, where several metabolic processes can occur simultaneously. We quantified hydrogenase enzyme activity and distribution in sediment samples from different aquatic subsurface environments (Lake Van, Barents Sea, Equatorial Pacific and Gulf of Mexico) using a tritium-based assay. We found enzyme activity at all sites and depths. Volumetric hydrogenase activity did not show much variability between sites and sampling depths, whereas cell-specific activity ranged from 10-5 to 1 nmol H2 cell-1 d-1. Activity was lowest in sediment layers where nitrate was detected. Higher activity was associated with samples in which sulfate was the predominant electron acceptor. We found highest activity in samples from environments with >10 ppm methane in the pore water. The results show that cell-specific hydrogenase enzyme activity increases with decreasing energy yield of the electron acceptor used. It is not possible to convert volumetric or cell-specific hydrogenase activity into a

  12. Protein sequence database for pathogenic arenaviruses

    OpenAIRE

    Bui, HH; Botten, J; Fusseder, N; Pasquetto, V; Mothe, B; Buchmeier, MJ; Sette, A

    2007-01-01

    Background: Arenaviruses are a family of rodent-borne viruses that cause several hemorrhagic fevers. These diseases can be devastating and are often lethal. Herein, to aid in the design and development of diagnostics, treatments and vaccines for arenavirus infections, we have developed a database containing protein sequences from the seven pathogenic arenaviruses (Junin, Guanarito, Sabia, Machupo, Whitewater Arroyo, Lassa and LCMV). Results: The database currently contains a non-redundant set...

  13. Pathogen transport in groundwater systems: contrasts with traditional solute transport

    Science.gov (United States)

    Hunt, Randall J.; Johnson, William P.

    2017-06-01

    Water quality affects many aspects of water availability, from precluding use to societal perceptions of fit-for-purpose. Pathogen source and transport processes are drivers of water quality because they have been responsible for numerous outbreaks resulting in large economic losses due to illness and, in some cases, loss of life. Outbreaks result from very small exposure (e.g., less than 20 viruses) from very strong sources (e.g., trillions of viruses shed by a single infected individual). Thus, unlike solute contaminants, an acute exposure to a very small amount of contaminated water can cause immediate adverse health effects. Similarly, pathogens are larger than solutes. Thus, interactions with surfaces and settling become important even as processes important for solutes such as diffusion become less important. These differences are articulated in "Colloid Filtration Theory", a separate branch of pore-scale transport. Consequently, understanding pathogen processes requires changes in how groundwater systems are typically characterized, where the focus is on the leading edges of plumes and preferential flow paths, even if such features move only a very small fraction of the aquifer flow. Moreover, the relatively short survival times of pathogens in the subsurface require greater attention to very fast (<10 year) flow paths. By better understanding the differences between pathogen and solute transport mechanisms discussed here, a more encompassing view of water quality and source water protection is attained. With this more holistic view and theoretical understanding, better evaluations can be made regarding drinking water vulnerability and the relation between groundwater and human health.

  14. Advanced Algebraic Multigrid Solvers for Subsurface Flow Simulation

    KAUST Repository

    Chen, Meng-Huo

    2015-09-13

    In this research we are particularly interested in extending the robustness of multigrid solvers to encounter complex systems related to subsurface reservoir applications for flow problems in porous media. In many cases, the step for solving the pressure filed in subsurface flow simulation becomes a bottleneck for the performance of the simulator. For solving large sparse linear system arising from MPFA discretization, we choose multigrid methods as the linear solver. The possible difficulties and issues will be addressed and the corresponding remedies will be studied. As the multigrid methods are used as the linear solver, the simulator can be parallelized (although not trivial) and the high-resolution simulation become feasible, the ultimately goal which we desire to achieve.

  15. A spatial and temporal continuous surface-subsurface hydrologic model

    Science.gov (United States)

    Xiao, Qing-Fu; Ustin, Susan L.; Wallender, Wesley W.

    1996-12-01

    A hydrologic model integrating surface-subsurface processes was developed based on spatial and temporal continuity theory. The raster-based mass balance hydrologic model consists of several submodels which determine spatial and temporal patterns in precipitation, surface flow, infiltration, subsurface flow, and the linkages between these submodels. Model parameters and variables are derived directly or indirectly from satellite remote sensing data, topographic maps, soil maps, literature, and weather station data and are stored in a Geographic Information System (GIS) database used for visualization. Surface resolution of cells in the model is 20 m by 20 m (pixel resolution of the Systeme Probatoire d'Observation de la Terre (SPOT) satellite image) over a 2511 km2 study area around the Crazy Mountains, Alaska, a watershed on the Arctic Circle draining into the Yukon River. The outputs from this model illustrate the interaction of physical and biologic factors on the partitioning of hydrologic components in a complex landscape.

  16. Subsurface characterization of 67P/Churyumov-Gerasimenko's Abydos Site

    Science.gov (United States)

    Brugger, B.; Mousis, O.; Morse, A.; Marboeuf, U.; Jorda, L.; Guilbert-Lepoutre, A.; Andrews, D.; Barber, S.; Lamy, P.; Luspay-Kuti, A.; Mandt, K.; Morgan, G.; Sheridan, S.; Vernazza, P.; Wright, I. P.

    2015-12-01

    We investigate the subsurface structure of comet 67P/Churyumov-Gerasimenko at the landing site of Rosetta's descent module Philae. We use a cometary nucleus model with an optimized parametrization and assume an initial composition derived from Rosetta/ROSINA measurements. We compare the CO and CO_2 outgassing rates derived from our model with those measured in situ by the Ptolemy experiment aboard the Philae module on November 12, 2014. We find results that allow us to place two main constraints on the subsurface structure of this region: a low CO/CO_2 molar ratio is needed in the nucleus, and the dust/ice mass ratio is higher at Abydos than in the rest of the nucleus. These specific constraints on Abydos support the statement of an important heterogeneity in 67P/Churyumov-Gerasimenko's nucleus.

  17. Automatic WEMVA by Focusing Subsurface Offset Virtual Sources

    KAUST Repository

    Sun, Bingbing

    2017-05-26

    Macro velocity building is important for subsequent prestack depth migration and full waveform inversion. Wave equation migration velocity analysis (WEMVA) utilizes band-limited waveform to invert the velocity in an automatic manner. Normally, inversion would be implemented by focusing the subsurface offset common image gathers(SOCIGs). We re-examine it with a different perspective and propose to view the SOCIGs and the background wavefield together as subsurface offset virtual sources(SOVS). A linear system connecting the perturbation of the position of those SOVS and velocity is derived and solved subsequently using a conjugate gradient method. Both synthetic and real dataset examples verify the correctness and effectiveness of the proposed method.

  18. On the nature of seasonal variations of subsurface radon

    International Nuclear Information System (INIS)

    Rudakov, V.P.

    1985-01-01

    Qualitative comparison of the curve of average monthly temperature variations of atmospheric air with change in concentration of subsurface radon and the curve of thermoplastic deformations of the earth surface conditioned by temperature variations of the surface layer of atmosphere is conducted on the basis of measurements of forecasting site in the Central Asic. Wave of thermoplastic deformations conditioned by seasonal variation of air temperature of the surface layer of the atmosphere is shown to be one of the sources of seasonal variations of subsurface radon concentration. Effect of deformations conditioned by temperature variations of the atmospheric surface layer, atmospheric precipitations and hydrogeological reasons should be taken into account in forecasting measurements of variations of underground radon concentration

  19. Isolation of pathogen-containing vacuoles.

    Science.gov (United States)

    Shevchuk, Olga; Steinert, Michael

    2013-01-01

    Dictyostelium discoideum cells are "professional phagocytes," as they ingest a large variety of bacteria, yeast, and inert particles. Several bacterial pathogens are able to survive intracellularly within specialized vacuoles of D. discoideum by interfering with host signaling pathways. To better understand the molecular mechanisms underlying these evolutionary conserved processes we have established a method for the isolation of pathogen-containing vacuoles (PCVs). The isolation protocol describes the infection of D. discoideum cells with the intracellular pathogen Legionella pneumophila, loading of the lysosomal compartment with colloidal iron, mechanical lysis of host cells, iodophenylnitrophenyltetrazolium (INT) heavy labeling of mitochondria, removal of nucleic acid by Benzonase treatment, separation of nuclei by low-speed centrifugation, and the magnetic removal of lysosomes. The subcellular fractionation in a discontinuous sucrose density OptiPrep gradient allows the separation of mitochondria and to prepare PCVs with high purity. The proteins isolated from PCVs have been successfully subjected to mass spectrometry and allowed to analyze pathogen-directed maturation processes of vacuoles. The method can also be applied for subsequent protein modification analyses and lipidome comparisons.

  20. The Role of Pathogenic Autoantibodies in Autoimmunity

    Directory of Open Access Journals (Sweden)

    Merrill J. Rowley

    2015-11-01

    Full Text Available The serological presence of autoantibodies is diagnostic of autoimmunity, and these autoantibodies may be present for many years before the presentation of autoimmune disease (AID. Although a pathogenic role has been demonstrated for various autoantibodies reactive with cell surface and extracellular autoantigens, studies using monoclonal antibodies (mAb show not all antibodies in the polyclonal response are pathogenic. Differences depend on Fab-mediated diversity in epitope specificity, Fc-mediated effects based on immunoglobulin (Ig class and subclass, activation of complement, and the milieu in which the reaction occurs. These autoantibodies often occur in organ-specific AID and this review illustrates their pathogenic and highly specific effects. The role of autoantibodies associated with intracellular antigens is less clear. In vitro they may inhibit or adversely affect well-defined intracellular biochemical pathways, yet, in vivo they are separated from their autoantigens by multiple cellular barriers. Recent evidence that Ig can traverse cell membranes, interact with intracellular proteins, and induce apoptosis has provided new evidence for a pathogenic role for such autoantibodies. An understanding of how autoantibodies behave in the polyclonal response and their role in pathogenesis of AID may help identify populations of culprit B-cells and selection of treatments that suppress or eliminate them.

  1. Pathogenic mycoflora on carrot seeds

    Directory of Open Access Journals (Sweden)

    Bogdan Nowicki

    2013-12-01

    Full Text Available Altogether 300 seed samples were collected during 9 years in 8 regions of Poland and the fungi Were isolated and their pathogenicity to carrot seedlings was examined. Alternaria rudicina provcd to be the most important pathogen although. A. alternata was more common. The other important pathogens were Fusarium spp., Phoma spp. and Botrytis cinerea. The infection of carrot seeds by A. radicina should be used as an important criterium in seed quality evaluation.

  2. The pathogenic equine streptococci.

    Science.gov (United States)

    Timoney, John F

    2004-01-01

    Streptococci pathogenic for the horse include S. equi (S. equi subsp. equi), S. zooepidemicus (S. equi subsp. zooepidemicus), S. dysgalactiae subsp. equisimilis and S. pneumoniae capsule Type III. S. equi is a clonal descendent or biovar of an ancestral S. zooepidemicus strain with which it shares greater than 98% DNA homology and therefore expresses many of the same proteins and virulence factors. Rapid progress has been made in identification of virulence factors and proteins uniquely expressed by S. equi. Most of these are expressed either on the bacterial surface or are secreted. Notable examples include the antiphagocytic SeM and the secreted pyrogenic superantigens SePE-I and H. The genomic DNA sequence of S. equi will greatly accelerate identification and characterization of additional virulence factors and vaccine targets. Although it is the most frequently isolated opportunist pyogen of the horse, S. zooepidemicus has been the subject of few contemporary research studies. Variation in the protectively immunogenic SzP proteins has, however, been well characterized. Given its opportunist behavior, studies are urgently needed on regulation of virulence factors such as capsule and proteases. Likewise, information is also very limited on virulence factors and associated gene regulation of S. dysgalactiae subspecies equisimilis. It has recently been shown that equine isolates of Streptococcus pneumoniae are clonal, a feature shared with S. equi. All equine isolates express capsule Type III, are genetically similar, and have deletions in the genes for autolysin and pneumolysin. In summary, the evolving picture of the interaction of the equine pathogenic streptococci and their host is that of multiple virulence factors active at different stages of pathogenesis. The inherent complexity of this interaction suggests that discovery of effective combinations of immunogens from potential targets identified in genomic sequence will be laborious.

  3. Gravity inferred subsurface structure of Gadwal schist belt, Andhra ...

    Indian Academy of Sciences (India)

    Gravity inferred subsurface structure of Gadwal schist belt,. Andhra Pradesh. G RAMADASS, I B ... structure having a width of 1.8 km at the surface, tapering at a depth of about 2.6 km with a positive density contrast of 0.15 gm/cc with ... bed rock pegmatites (0.035 to 0.25 ppm) and soil samples (0.035 to 4.25 ppm) in a shear ...

  4. Surface Modification and Surface - Subsurface Exchange Processes on Europa

    Science.gov (United States)

    Phillips, C. B.; Molaro, J.; Hand, K. P.

    2017-12-01

    The surface of Jupiter's moon Europa is modified by exogenic processes such as sputtering, gardening, radiolysis, sulfur ion implantation, and thermal processing, as well as endogenic processes including tidal shaking, mass wasting, and the effects of subsurface tectonic and perhaps cryovolcanic activity. New materials are created or deposited on the surface (radiolysis, micrometeorite impacts, sulfur ion implantation, cryovolcanic plume deposits), modified in place (thermal segregation, sintering), transported either vertically or horizontally (sputtering, gardening, mass wasting, tectonic and cryovolcanic activity), or lost from Europa completely (sputtering, plumes, larger impacts). Some of these processes vary spatially, as visible in Europa's leading-trailing hemisphere brightness asymmetry. Endogenic geologic processes also vary spatially, depending on terrain type. The surface can be classified into general landform categories that include tectonic features (ridges, bands, cracks); disrupted "chaos-type" terrain (chaos blocks, matrix, domes, pits, spots); and impact craters (simple, complex, multi-ring). The spatial distribution of these terrain types is relatively random, with some differences in apex-antiapex cratering rates and latitudinal variation in chaos vs. tectonic features. In this work, we extrapolate surface processes and rates from the top meter of the surface in conjunction with global estimates of transport and resurfacing rates. We combine near-surface modification with an estimate of surface-subsurface (and vice versa) transport rates for various geologic terrains based on an average of proposed formation mechanisms, and a spatial distribution of each landform type over Europa's surface area. Understanding the rates and mass balance for each of these processes, as well as their spatial and temporal variability, allows us to estimate surface - subsurface exchange rates over the average surface age ( 50myr) of Europa. Quantifying the timescale

  5. Multi-step heater deployment in a subsurface formation

    Science.gov (United States)

    Mason, Stanley Leroy [Allen, TX

    2012-04-03

    A method for installing a horizontal or inclined subsurface heater includes placing a heating section of a heater in a horizontal or inclined section of a wellbore with an installation tool. The tool is uncoupled from the heating section. A lead in section is mechanically and electrically coupled to the heating section of the heater. The lead-in section is located in an angled or vertical section of the wellbore.

  6. Method of sealing casings of subsurface materials management system

    Science.gov (United States)

    Nickelson, Reva A.; Richardson, John G.; Kostelnik, Kevin M.; Sloan, Paul A.

    2007-02-06

    Systems, components, and methods relating to subterranean containment barriers. Laterally adjacent tubular casings having male interlock structures and multiple female interlock structures defining recesses for receiving a male interlock structure are used to create subterranean barriers for containing and treating buried waste and its effluents. The multiple female interlock structures enable the barriers to be varied around subsurface objects and to form barrier sidewalls. The barrier may be used for treating and monitoring a zone of interest.

  7. Thematic survey of subsurface drainage systems in the Czech Republic

    Czech Academy of Sciences Publication Activity Database

    Tlapáková, L.; Žaloudík, Jiří; Kolejka, Jaromír

    2017-01-01

    Roč. 13, č. 2 (2017), s. 55-65 ISSN 1744-5647 Institutional support: RVO:60077344 ; RVO:68145535 Keywords : subsurface drainage system * remote sensing * image interpretation * drainage recognition and mapping Subject RIV: DJ - Water Pollution ; Quality; DE - Earth Magnetism, Geodesy, Geography (UGN-S) OBOR OECD: Environmental sciences (social aspects to be 5.7); Physical geography (UGN-S) Impact factor: 2.174, year: 2016

  8. Martian geomorphology and its relation to subsurface volatiles

    Science.gov (United States)

    Clifford, Stephen M. (Editor); Rossbacher, Lisa A. (Editor); Zimbelman, James R. (Editor)

    1986-01-01

    Martian volatile inventory, planetary climatic and atmospheric evolution, and the interpretation of various remote sensing data were discussed. A number of morphologies that were cited as potential indicators of subsurface volatiles were reviewed. Rampart craters and terrain softening were the focus of more in-depth discussion because of the popular attention they have received and the fact that their areal distributions are by far the most extensive of all the proposed indicators.

  9. Pharmaceutical removal in tropical subsurface flow constructed wetlands at varying hydraulic loading rates.

    Science.gov (United States)

    Zhang, Dong Qing; Gersberg, Richard M; Hua, Tao; Zhu, Junfei; Tuan, Nguyen Anh; Tan, Soon Keat

    2012-04-01

    Determining the fate of emerging organic contaminants in an aquatic ecosystem is important for developing constructed wetlands (CWs) treatment technology. Experiments were carried out in subsurface flow CWs in Singapore to evaluate the fate and transport of eight pharmaceutical compounds. The CW system included three parallel horizontal subsurface flow CWs and three parallel unplanted beds fed continuously with synthetic wastewater at different hydraulic retention times (HRTs). The findings of the tests at 2-6 d HRTs showed that the pharmaceuticals could be categorized as (i) efficiently removed compounds with removal higher than 85% (ketoprofen and salicylic acid); (ii) moderately removed compounds with removal efficiencies between 50% and 85% (naproxen, ibuprofen and caffeine); and (iii) poorly removed compounds with efficiency rate lower than 50% (carbamazepine, diclofenac, and clofibric acid). Except for carbamazepine and salicylic acid, removal efficiencies of the selected pharmaceuticals showed significant (pcaffeine, ketoprofen and clofibric acid were found to follow first order decay kinetics with decay constants higher in the planted beds than the unplanted beds. Correlations between pharmaceutical removal efficiencies and log K(ow) were not significant (p>0.05), implying that their removal is not well related to the compound's hydrophobicity. Copyright © 2011 Elsevier Ltd. All rights reserved.

  10. Fate of nitrogen for subsurface drip dispersal of effluent from small wastewater systems

    Science.gov (United States)

    Beggs, R. A.; Hills, D. J.; Tchobanoglous, G.; Hopmans, J. W.

    2011-09-01

    Subsurface drip irrigation systems apply effluent from onsite wastewater systems in a more uniform manner at a lower rate than has been possible with other effluent dispersal methods. The effluent is dispersed in a biologically active part of the soil profile for optimal treatment and where the water and nutrients can be utilized by landscape plants. Container tests were performed to determine the fate of water and nitrogen compounds applied to packed loamy sand, sandy loam, and silt loam soils. Nitrogen removal rates measured in the container tests ranged from 63 to 95% despite relatively low levels of available carbon. A Hydrus 2D vadose zone model with nitrification and denitrification rate coefficients calculated as a function of soil moisture content fit the container test results reasonably well. Model results were sensitive to the denitrification rate moisture content function. Two-phase transport parameters were needed to model the preferential flow conditions in the finer soils. Applying the model to generic soil types, the greatest nitrogen losses (30 to 70%) were predicted for medium to fine texture soils and soils with restrictive layers or capillary breaks. The slow transport with subsurface drip irrigation enhanced total nitrogen losses and plant nitrogen uptake opportunity.

  11. Multiplex detection of respiratory pathogens

    Science.gov (United States)

    McBride, Mary [Brentwood, CA; Slezak, Thomas [Livermore, CA; Birch, James M [Albany, CA

    2012-07-31

    Described are kits and methods useful for detection of respiratory pathogens (influenza A (including subtyping capability for H1, H3, H5 and H7 subtypes) influenza B, parainfluenza (type 2), respiratory syncytial virus, and adenovirus) in a sample. Genomic sequence information from the respiratory pathogens was analyzed to identify signature sequences, e.g., polynucleotide sequences useful for confirming the presence or absence of a pathogen in a sample. Primer and probe sets were designed and optimized for use in a PCR based, multiplexed Luminex assay to successfully identify the presence or absence of pathogens in a sample.

  12. Reorientation of Sputnik Planitia implies a subsurface ocean on Pluto.

    Science.gov (United States)

    Nimmo, F; Hamilton, D P; McKinnon, W B; Schenk, P M; Binzel, R P; Bierson, C J; Beyer, R A; Moore, J M; Stern, S A; Weaver, H A; Olkin, C B; Young, L A; Smith, K E

    2016-12-01

    The deep nitrogen-covered basin on Pluto, informally named Sputnik Planitia, is located very close to the longitude of Pluto's tidal axis and may be an impact feature, by analogy with other large basins in the Solar System. Reorientation of Sputnik Planitia arising from tidal and rotational torques can explain the basin's present-day location, but requires the feature to be a positive gravity anomaly, despite its negative topography. Here we argue that if Sputnik Planitia did indeed form as a result of an impact and if Pluto possesses a subsurface ocean, the required positive gravity anomaly would naturally result because of shell thinning and ocean uplift, followed by later modest nitrogen deposition. Without a subsurface ocean, a positive gravity anomaly requires an implausibly thick nitrogen layer (exceeding 40 kilometres). To prolong the lifetime of such a subsurface ocean to the present day and to maintain ocean uplift, a rigid, conductive water-ice shell is required. Because nitrogen deposition is latitude-dependent, nitrogen loading and reorientation may have exhibited complex feedbacks.

  13. Applications of electrical resistance tomography to subsurface environmental restoration

    Energy Technology Data Exchange (ETDEWEB)

    Ramirez, A.L. [Lawrence Livermore National Lab., CA (United States); Daily, W.D.

    1994-11-15

    We are developing a new imaging technique, Electrical Resistance Tomography (ERT), to map subsurface liquids as flow occurs during natural or clean-up processes and to map geologic structure. Natural processes (such as surface water infiltrating the vadose zone) and man-induced processes (such as tank leaks and clean-up processes such as steam injection), can create changes in a soil`s electrical properties that are readily measured. We have conducted laboratory and a variety of field experiments to investigate the capabilities and limitations of ERT for imaging underground structures and processes. In the last four years we have used ERT to successfully monitor several field processes including: a subsurface steam injection process (for VOC removal), an air injection process (below the water table) for VOC removal, water infiltration through the vadose zone, radio-frequency heating, ohmic heating, and tank and pond leaks. The information derived from ERT can be used by remediation projects to: detect and locate leaks, determine the effectiveness of clean-up processes, select appropriate clean-up alternatives, and to verify the installation and performance of subsurface barriers.

  14. STOMP, Subsurface Transport Over Multiple Phases, theory guide

    International Nuclear Information System (INIS)

    White, M.D.; Oostrom, M.

    1996-10-01

    This guide describes the simulator's governing equations, constitutive functions and numerical solution algorithms of the STOMP (Subsurface Transport Over Multiple Phases) simulator, a scientific tool for analyzing multiple phase subsurface flow and transport. The STOMP simulator's fundamental purpose is to produce numerical predictions of thermal and hydrologic flow and transport phenomena in variably saturated subsurface environments, which are contaminated with volatile or nonvolatile organic compounds. Auxiliary applications include numerical predictions of solute transport processes including radioactive chain decay processes. In writing these guides for the STOMP simulator, the authors have assumed that the reader comprehends concepts and theories associated with multiple-phase hydrology, heat transfer, thermodynamics, radioactive chain decay, and nonhysteretic relative permeability, saturation-capillary pressure constitutive functions. The authors further assume that the reader is familiar with the computing environment on which they plan to compile and execute the STOMP simulator. The STOMP simulator requires an ANSI FORTRAN 77 compiler to generate an executable code. The memory requirements for executing the simulator are dependent on the complexity of physical system to be modeled and the size and dimensionality of the computational domain. Likewise execution speed depends on the problem complexity, size and dimensionality of the computational domain, and computer performance. One-dimensional problems of moderate complexity can be solved on conventional desktop computers, but multidimensional problems involving complex flow and transport phenomena typically require the power and memory capabilities of workstation or mainframe type computer systems

  15. Hydrogeological investigation of subsurface of Cukurkoy surroundings (Denizli

    Directory of Open Access Journals (Sweden)

    Suat TAŞDELEN

    2016-06-01

    Full Text Available Çukurköy graben, located at 13 km southeast from Denizli city, is a side basin with 96.4 km2 surface drainage area which is connected to the Gökpınar dam catchment area through narrow strait. There are a lots of resources having various discharges on the western slopes of the Honaz mountain in the east of the Çukurköy basin. These resources were originated from runoff from the ridges which is located between Tavas plain and Çukurköy basin, and were formed the Gökpınar creek, one of the main tributaries of Büyük Menderes river. In addition, subsurface waters feed these streams as leaks wherein groundwater level is very shallow level. By the time, local people had opened many boreholes and wells, and they caused to dry out of some continuous resources and streams. Discharge rates of scheduled pumping waters from boreholes are changing dramatically for short distances, because of irregularly located alluvial material. The flow direction of both shallow subsurface and surface waters of the basin outflows toward the northwest that is controlled by surface morphology. These shallow subsurface waters are insufficient for increasing requirements except for small and individual usages.

  16. Ecology, physiology, and phylogeny of deep subsurface Sphingomonas sp.

    Energy Technology Data Exchange (ETDEWEB)

    Fredrickson, Jim K.; Balkwill, David L.; Romine, Margaret F.; Shi, T

    1999-10-01

    Several new species of the genus Sphingomonas including S. aromaticivorans, S. stygia, and S. subterranea that have the capacity for degrading a broad range of aromatic compounds including toluene, naphthalene, xylenes, p-cresol, fluorene, biphenyl, and dibenzothiophene, were isolated from deeply-buried (>200 m) sediments of the US Atlantic coastal plain (ACP). In S. aromaticivorans F199, many of the genes involved in the catabolism of these aromatic compounds are encoded on a 184-kb conjugative plasmid; some of the genes involved in aromatic catabolism are plasmid-encoded in the other strains as well. Members of the genus Sphingomonas were common among aerobic heterotrophic bacteria cultured from ACP sediments and have been detected in deep subsurface environments elsewhere. The major source of organic carbon for heterotrophic metabolism in ACP deep aquifers is lignite that originated from plant material buried with the sediments. We speculate that the ability of the subsurface Sphingomonas strains to degrade a wide array of aromatic compounds represents an adaptation for utilization of sedimentary lignite. These and related subsurface Sphingomonas spp may play an important role in the transformation of sedimentary organic carbon in the aerobic and microaerobic regions of the deep aquifers of the ACP.

  17. Uranium Biomineralization By Natural Microbial Phosphatase Activities in the Subsurface

    Energy Technology Data Exchange (ETDEWEB)

    Taillefert, Martial [Georgia Tech Research Corporation, Atlanta, GA (United States)

    2015-04-01

    This project investigated the geochemical and microbial processes associated with the biomineralization of radionuclides in subsurface soils. During this study, it was determined that microbial communities from the Oak Ridge Field Research subsurface are able to express phosphatase activities that hydrolyze exogenous organophosphate compounds and result in the non-reductive bioimmobilization of U(VI) phosphate minerals in both aerobic and anaerobic conditions. The changes of the microbial community structure associated with the biomineralization of U(VI) was determined to identify the main organisms involved in the biomineralization process, and the complete genome of two isolates was sequenced. In addition, it was determined that both phytate, the main source of natural organophosphate compounds in natural environments, and polyphosphate accumulated in cells could also be hydrolyzed by native microbial population to liberate enough orthophosphate and precipitate uranium phosphate minerals. Finally, the minerals produced during this process are stable in low pH conditions or environments where the production of dissolved inorganic carbon is moderate. These findings suggest that the biomineralization of U(VI) phosphate minerals is an attractive bioremediation strategy to uranium bioreduction in low pH uranium-contaminated environments. These efforts support the goals of the SBR long-term performance measure by providing key information on "biological processes influencing the form and mobility of DOE contaminants in the subsurface".

  18. Subsurface metals fatigue cracking without and with crack tip

    Directory of Open Access Journals (Sweden)

    Andrey Shanyavskiy

    2013-07-01

    Full Text Available Very-High-Cycle-Fatigue regime for metals was considered and mechanisms of the subsurface crack origination were introduced. In many metals first step of crack origination takes place with specific area formation because of material pressing and rotation that directed to transition in any volume to material ultra-high-plasticity with nano-structure appearing. Then by the border of the nano-structure takes place volume rotation and fracture surface creates with spherical particles which usually named Fine-Granular-Area. In another case there takes place First-Smooth-Facet occurring in area of origin due to whirls appearing by the one of the slip systems under discussed the same stress-state conditions. Around Fine-Granular-Area or First-Smooth-Facet there plastic zone appeared and, then, subsurface cracking develops by the same manner as for through cracks. In was discussed quantum-mechanical nature of fatigue crack growth in accordance with Yang’s modulus quantization for low level of deformations. New simply equation was considered for describing subsurface cracking in metals out of Fine-Granular-Area or Fist-Smooth-Facet.

  19. Change in ocean subsurface environment to suppress tropical cyclone intensification under global warming

    Science.gov (United States)

    Huang, Ping; Lin, I. -I; Chou, Chia; Huang, Rong-Hui

    2015-01-01

    Tropical cyclones (TCs) are hazardous natural disasters. Because TC intensification is significantly controlled by atmosphere and ocean environments, changes in these environments may cause changes in TC intensity. Changes in surface and subsurface ocean conditions can both influence a TC's intensification. Regarding global warming, minimal exploration of the subsurface ocean has been undertaken. Here we investigate future subsurface ocean environment changes projected by 22 state-of-the-art climate models and suggest a suppressive effect of subsurface oceans on the intensification of future TCs. Under global warming, the subsurface vertical temperature profile can be sharpened in important TC regions, which may contribute to a stronger ocean coupling (cooling) effect during the intensification of future TCs. Regarding a TC, future subsurface ocean environments may be more suppressive than the existing subsurface ocean environments. This suppressive effect is not spatially uniform and may be weak in certain local areas. PMID:25982028

  20. Change in ocean subsurface environment to suppress tropical cyclone intensification under global warming.

    Science.gov (United States)

    Huang, Ping; Lin, I-I; Chou, Chia; Huang, Rong-Hui

    2015-05-18

    Tropical cyclones (TCs) are hazardous natural disasters. Because TC intensification is significantly controlled by atmosphere and ocean environments, changes in these environments may cause changes in TC intensity. Changes in surface and subsurface ocean conditions can both influence a TC's intensification. Regarding global warming, minimal exploration of the subsurface ocean has been undertaken. Here we investigate future subsurface ocean environment changes projected by 22 state-of-the-art climate models and suggest a suppressive effect of subsurface oceans on the intensification of future TCs. Under global warming, the subsurface vertical temperature profile can be sharpened in important TC regions, which may contribute to a stronger ocean coupling (cooling) effect during the intensification of future TCs. Regarding a TC, future subsurface ocean environments may be more suppressive than the existing subsurface ocean environments. This suppressive effect is not spatially uniform and may be weak in certain local areas.

  1. Treatment

    Directory of Open Access Journals (Sweden)

    Safaa M. Raghab

    2013-08-01

    The main goal of this study is to utilize a natural low cost material “as an accelerator additive to enhance the chemical treatment process using Alum coagulant and the accelerator substances were Perlite and Bentonite. The performance of the chemical treatment was enhanced using the accelerator substances with 90 mg/l Alum as a constant dose. Perlite gave better performance than the Bentonite effluent. The removal ratio for conductivity, turbidity, BOD and COD for Perlite was 86.7%, 87.4%, 89.9% and 92.8% respectively, and for Bentonite was 83.5%, 85.0%, 86.5% and 85.0% respectively at the same concentration of 40 mg/l for each.

  2. Hydrologic Impact Of Subsurface Drainage Of Agricultural Fields

    Science.gov (United States)

    Naz, B. S.; Johannsen, C. J.; Bowling, L. C.

    2005-12-01

    Although subsurface drainage has benefited agricultural productions in many regions of the U.S., there are also concerns about the potential impacts of these systems on watershed hydrology and water quality. This study was focused on tile lines identification and hydrologic response of subsurface drainage systems for the Agronomy Center for Research and Education (ACRE), West Lafayette, Indiana and the Southeastern Purdue Agriculture Center (SEPAC) in southeastern, Indiana. The purpose of the study was to develop and evaluate a remote sensing methodology for automatic detection of tile lines from aerial photographs and to evaluate the Distributed Hydrology Soil-Vegetation Model (DHSVM) to analyze the hydrologic response of tile drained fields. A step-wise approach was developed to first use different image enhancement techniques to increase the visual distinction of tile lines from other details in the image. A new classification model was developed to identify locations of subsurface tiles using a decision tree classifier which compares the multiple data sets such as enhanced image data, land use class, soil drainage class, hydrologic group and surface slope. Accuracy assessment of the predicted tile map was done by comparing the locations of tile drains with existing historic maps and ground-truth data. The overall performance of decision tree classifier model coupled with other pre- and post- classification methods shows that this model can be a very effective tool in identifying tile lines from aerial photographs over large areas of land. Once the tile map was created, the DHSVM was applied to ACRE and SEPAC respectively to see the hydrological impact of the subsurface drainage network. Observed data for 3-years (1998-2000) at ACRE and for 6-years (1993-1998) at SEPAC were used to calibrate and validate the model. The model was simulated for three scenarios: 1) baseline scenario (no tiles), 2) with known tile lines and 3) with tile lines created through

  3. Comparative proteomic analysis of pathogenic and non-pathogenic strains from the swine pathogen Mycoplasma hyopneumoniae

    Directory of Open Access Journals (Sweden)

    Klein Cátia S

    2009-12-01

    Full Text Available Abstract Background Mycoplasma hyopneumoniae is a highly infectious swine pathogen and is the causative agent of enzootic pneumonia (EP. Following the previous report of a proteomic survey of the pathogenic 7448 strain of swine pathogen, Mycoplasma hyopneumoniae, we performed comparative protein profiling of three M. hyopneumoniae strains, namely the non-pathogenic J strain and the two pathogenic strains 7448 and 7422. Results In 2DE comparisons, we were able to identify differences in expression levels for 67 proteins, including the overexpression of some cytoadherence-related proteins only in the pathogenic strains. 2DE immunoblot analyses allowed the identification of differential proteolytic cleavage patterns of the P97 adhesin in the three strains. For more comprehensive protein profiling, an LC-MS/MS strategy was used. Overall, 35% of the M. hyopneumoniae genome coding capacity was covered. Partially overlapping profiles of identified proteins were observed in the strains with 81 proteins identified only in one strain and 54 proteins identified in two strains. Abundance analysis of proteins detected in more than one strain demonstrates the relative overexpression of 64 proteins, including the P97 adhesin in the pathogenic strains. Conclusions Our results indicate the physiological differences between the non-pathogenic strain, with its non-infective proliferate lifestyle, and the pathogenic strains, with its constitutive expression of adhesins, which would render the bacterium competent for adhesion and infection prior to host contact.

  4. Bacteriophages for detection of bacterial pathogens

    International Nuclear Information System (INIS)

    Kutateladze, M.

    2009-01-01

    The G. Eliava Institute of Bacteriophages, Microbiology and Virology (Tbilisi, Georgia) is one of the most famous institutions focused on bacteriophage research for the elaboration of appropriate phage methodologies for human and animal protection. The main direction of the institute is the study and production of bacteriophages against intestinal disorders (dysentery, typhoid, intesti) and purulent-septic infections (staphylococcus, streptococcus, pyophage, etc.). These preparations were successfully introduced during the Soviet era, and for decades were used throughout the former Soviet Union and in other Socialist countries for the treatment, prophylaxis, and diagnosis of various infectious diseases, including those caused by antibiotic-resistant bacterial strains. Bacteriophages were widely used for identifying and detecting infections caused by the most dangerous pathogens and causative agents of epidemiological outbreaks. The specific topic of this presentation is the phage typing of bacterial species, which can be an important method for epidemiological diagnostics. Together with different genetic methodologies - such as PCR-based methods, PFGE, plasmid fingerprinting, and ribosomal typing - phage typing is one method for identifying bacterial pathogens. The method has a high percentage of determination of phage types, high specificity of reaction, and is easy for interpretation and use by health workers. Phage typing was applied for inter-species differentiation of different species of Salmonella, S. typhi, Brucella spp, Staphylococcus aureus, E. col,i Clostridium deficile, Vibrio cholerae, Yersinia pestis, Yersinia enterocolitica, Lysteria monocytogenes, Clostridium perfringens, Clostridium tetani, plant pathogens, and other bacterial pathogens. In addition to addressing the utility and efficacy of phage typing, the paper will discuss the isolation and selection of diagnostic typing phages for interspecies differentiation of pathogens that is necessary

  5. Periodontal pathogens in atheromatous plaque.

    Science.gov (United States)

    Rath, Saroj K; Mukherjee, Manish; Kaushik, R; Sen, Sourav; Kumar, Mukesh

    2014-01-01

    There has been increasing attention paid in recent years to the possibility that oral bacterial infection, particularly periodontal disease may influence the initiation and or progression of systemic diseases. These studies confirm the observation that heart disease is the most commonly found systemic condition in patients with periodontal disease. Moreover, the literature has also highlighted substantial evidence indicating the presence of Gram-negative periodontal pathogens in atheromatous plaques. This study intends to investigate the possible association between periodontal health and coronary artery disease by evaluating periodontal status, association between the periodontal plaque and coronary atheromatous plaques for presence of micro-organisms such as, Aggregatibacter actinomycetemcomitans, Porphyromonas gingivalis, Prevotella intermedia, and Tannerella forsythia. A case-control study was designed with seven patients who had undergone coronary endarterectomy for cardiovascular disease and 28 controls. The periodontal examination for cases was performed 1 day before vascular surgery and the controls were clinically examined. The atheromatous plaque sample collected during endarterectomy and the intraoral plaque samples were subjected to polymerase chain reaction for identification of A. actinomycetemcomitans, P. gingivalis, P. intermedia and T. forsythia. The presence of periodontal bacteria DNA in coronary atheromatous plaques and sub-gingival plaque samples of the same patients was confirmed by this study. CONCLUSION A correlation was established between putative bacteria contributing to atheromatous plaques and species associated with periodontal disease. One particularly important study to be carried out is the investigation of a possible clinically meaningful reduction in coronary heart disease resulting from the prevention or treatment of periodontal disease.

  6. Designing a Decision Support System for subsurface activities: A meta analysis of the design of a social acceptance motivated decision support system for subsurface activities in the Netherlands

    NARCIS (Netherlands)

    van Os, Herman; Herber, Rien; Scholtens, Bert

    2014-01-01

    The decision-making process for subsurface activities in the Netherlands has been unable to cope with the driving forces related to social acceptance in several recently proposed subsurface activities. We therefore investigated the possibility to include the triangle of social acceptance in the

  7. Periodontal pathogen levels in adolescents before, during, and after fixed orthodontic appliance therapy.

    Science.gov (United States)

    Thornberg, Michelle J; Riolo, Christopher S; Bayirli, Burcu; Riolo, Michael L; Van Tubergen, Elizabeth A; Kulbersh, Richard

    2009-01-01

    This purpose of this study was to document and investigate changes in periodontal pathogen levels before, during, and after orthodontic treatment in adolescents. DNA gene probe analysis was used to quantify the levels of 8 periodontal pathogens before, during, and after treatment with fixed orthodontic appliances in 190 concurrently treated adolescent orthodontic patients. The 8 pathogens examined were Actinobacillus actinomycetemcomitans (AA), Porphyromonas gingivalis (PG), Prevotella intermedia (PI), Tannerella forsythia (TF), Eikenella corrodens (EC), Fusobacterium nucleatum (FN), Treponema denticola (TD), and Campylobacter rectus (CR). Chi-square tests were used to determine whether the percentages of subjects with high counts significantly changed over time. Logistic regression analyses were also performed to derive the relative risk of higher counts of pathogenic bacteria with fixed appliances at the various time intervals studied. For 6 (PI, TF, EC, FN, TD, CR) of the 8 pathogens, the percentages of subjects with high pathogen counts increased significantly after 6 months of fixed appliance treatment, but these returned to pretreatment levels by 12 months of orthodontic treatment. No pathogen level was significantly higher after 12 months of orthodontic treatment, and orthodontic treatment was found to be significantly protective for half of the pathogens (EC, FN, TD, CR) posttreatment. Orthodontic treatment with fixed appliances does not increase the risk of high levels of these periodontal pathogens.

  8. The sunflower downy mildew pathogen Plasmopara halstedii.

    Science.gov (United States)

    Gascuel, Quentin; Martinez, Yves; Boniface, Marie-Claude; Vear, Felicity; Pichon, Magalie; Godiard, Laurence

    2015-02-01

    plant organs to release asexual zoosporangia. These zoosporangia play an important role in pathogen dissemination, as they release motile zoospores that are responsible for leaf infections on neighbouring plants. Disease control is obtained by both chemical seed treatment (mefenoxam) and the deployment of dominant major resistance genes, denoted Pl. However, the pathogen has developed fungicide resistance and has overcome some plant resistance genes. Research for more sustainable strategies based on the identification of the molecular basis of the interaction are in progress. http://www.heliagene.org/HP, http://lipm-helianthus.toulouse.inra.fr/dokuwiki/doku.php?id=start, https://www.heliagene.org/PlasmoparaSpecies (soon available). © 2014 BSPP AND JOHN WILEY & SONS LTD.

  9. Ecology of Pathogen Groups: Fungi

    DEFF Research Database (Denmark)

    Hajek, Ann E.; Meyling, Nicolai Vitt

    2018-01-01

    Summary This chapter investigates the recent results of studies of the ecology of fungal pathogens, including ecological insights obtained by implementation of molecular tools. It spans a spectrum of invertebrates as hosts, although emphasis will be on pathogens of terrestrial insects, which have...... been the focus of most ecological research. Some taxa of invertebrate pathogenic fungi have evolved adaptations for utilizing living plants as substrates, and these lifestyles have recently received increased attention from researchers following the initial documentations of such plant associations...... by Beauveria and Metarhizium. This topic has recently been reviewed; the chapter mainly focuses on aspects of ecological relevance, including trophic interactions. Fungal pathogens are used to provide biological control in numerous ways. The primary type of biological control emphasized for fungal pathogens...

  10. The pathogenicity of cytomegalovirus.

    Science.gov (United States)

    Sweet, C

    1999-07-01

    Human cytomegalovirus is ubiquitous, yet causes little illness in immunocompetent individuals. Disease is evident in immunodeficient groups such as neonates, transplant recipients and AIDS patients either following a primary infection or reactivation of a latent infection. Little is known of the mechanisms underlying the pathogenicity of the virus. The recent determination of the nucleotide sequence of both human cytomegalovirus (strain AD169) and murine cytomegalovirus (murine cytomegalovirus strain Smith) has allowed an analysis of the biological importance of several virus genes. Studies with human cytomegalovirus have indicated that many viral genes are non-essential for replication in vitro which are thus assumed to be important in the pathogenesis of the virus. This is being examined in the murine model where the role of the gene and its product in disease can be directly examined in vivo using viral mutants in which the relevant gene has been interrupted or deleted. Current information on the role of cytomegalovirus genes in tissue tropism, immune evasion, latency, reactivation from latency and damage is described.

  11. Bacteriophages in the control of pathogenic vibrios

    Directory of Open Access Journals (Sweden)

    Nicolás Plaza

    2018-01-01

    Full Text Available Vibrios are common inhabitants of marine and estuarine environments. Some of them can be pathogenic to humans and/or marine animals using a broad repertory of virulence factors. Lately, several reports have indicated that the incidence of Vibrio infections in humans is rising and also in animals constitute a continuing threat for aquaculture. Moreover, the continuous use of antibiotics has been accompanied by an emergence of antibiotic resistance in Vibrio species, implying a necessity for efficient treatments. One promising alternative that emerges is the use of lytic bacteriophages; however, there are some drawbacks that should be overcome to make phage therapy a widely accepted method. In this work, we discuss about the major pathogenic Vibrio species and the progress, benefits and disadvantages that have been detected during the experimental use of bacteriophages to their control.

  12. Protein sequence database for pathogenic arenaviruses

    Science.gov (United States)

    Bui, Huynh-Hoa; Botten, Jason; Fusseder, Nicolas; Pasquetto, Valerie; Mothe, Bianca; Buchmeier, Michael J; Sette, Alessandro

    2007-01-01

    Background Arenaviruses are a family of rodent-borne viruses that cause several hemorrhagic fevers. These diseases can be devastating and are often lethal. Herein, to aid in the design and development of diagnostics, treatments and vaccines for arenavirus infections, we have developed a database containing protein sequences from the seven pathogenic arenaviruses (Junin, Guanarito, Sabia, Machupo, Whitewater Arroyo, Lassa and LCMV). Results The database currently contains a non-redundant set of 333 protein sequences which were manually annotated. All entries were linked to NCBI and cited PubMed references. The database has a convenient query interface including BLAST search. Sequence variability analyses were also performed and the results are hosted in the database. Conclusion The database is available at and can be used to aid in studies that require proteomic information from pathogenic arenaviruses. PMID:17288609

  13. Recontamination as a source of pathogens in processed foods

    NARCIS (Netherlands)

    Reij, M.W.; Asselt-den Aantrekker, van E.D.

    2004-01-01

    Food products that have been submitted to an adequate heat-treatment during processing are free of vegetative pathogens and, depending on the treatments, of sporeformers and are generally regarded as safe. Processed products such as pate, ice cream, infant formulae and others have nevertheless been

  14. Genomics of clostridial pathogens: implication of extrachromosomal elements in pathogenicity.

    Science.gov (United States)

    Brüggemann, Holger

    2005-10-01

    The recently decoded genomes of the major clostridial toxin-producing pathogens Clostridium perfringens, Clostridium tetani, Clostridium botulinum and Clostridium difficile have provided a huge amount of new sequence data. Recent studies have focused on the identification and investigation of pathogenic determinants and the regulatory events governing their expression. The sequence data revealed also the genomic background of virulence genes, as well as the contribution of extrachromosomal elements to a pathogenic phenotype. This has generated new insights in clostridial pathogenesis - and will continue to do so in the future - and has deepened our understanding of the anaerobic lifestyle of clostridial species.

  15. Limestone and Zeolite as Alternative Media in Horizontal Subsurface Flow Constructed Wetlands: Laboratory-Scale Studies

    Science.gov (United States)

    Lizama, K.; Jaque, I.; Ayala, J.

    2016-12-01

    Arsenic is well known for its chronic toxicity. Millions of people around the world are currently at risk, drinking water with As concentrations above 10 ppb, the WHO drinking water guideline. Although different treatment options exist, they are often limited by elevated costs and maintenance requirements. Constructed wetlands are a natural water treatment system, capable to remove metals and metalloids -including As- via different physical, chemical and biological processes. The use of alternative supporting media to enhance As removal in subsurface flow wetlands has been recommended, but not sufficiently studied. Limestone and zeolite have been identified as effective supporting media in subsurface flow wetlands aiming As removal. However, there are still key aspects to be addressed, such as the implications of using these media, the speciation in the solid phase, the role of vegetation, etc. This study investigated the performance of limestone and zeolite in three types of experiments: batch, column and as main supporting media in a bench scale horizontal subsurface flow wetland system. Synthetic water resembling a contaminated river in Chile (As concentration=3 mg/L, Fe concentration= 100 mg/L, pH=2) was used in all experiments. In the batch experiments, the As concentration, the mass of media and the contact time were varied. The column system consisted of three limestone columns and three zeolite columns, operated under a hydraulic loading of 20 mm/d. The wetland system consisted of twelve PVC cells: six filled with zeolite and six with limestone. Phragmites australis were planted in three cells of each media type, as control cells. From the batch experiments, maximum As sorption capacities as indicated by Langmuir model were 1.3 mg/g for limestone and 0.17 mg/g for zeolite, at 18 h contact time and 6.3 g/L medium concentration. EDS and XPS analyses revealed that As and Fe were retained in zeolite at the end of the batch experiments. Zeolite and limestone

  16. Microbial activity in subsurface samples before and during nitrate-enhanced bioremediation

    International Nuclear Information System (INIS)

    Thomas, J.M.; Gordy, V.R.; Bruce, C.L.; Ward, C.H.; Hutchins, S.R.; Sinclair, J.L.

    1995-01-01

    A study was conducted to determine the microbial activity at a site contaminated with JP-4 jet fuel before and during nitrate-enhanced bioremediation. Samples at three depths from six different locations were collected aseptically under anaerobic conditions before and during treatment. Cores were located in or close to the source of contamination, downgradient of the source, or outside the zone of contamination. Parameters for microbial characterization included (1) viable counts of aerobic heterotrophic, JP-4 degrading, and oligotrophic bacteria; (2) the most probable number (MPN) of aerobic and anaerobic protozoa; (3) the MPN of total denitrifiers; and (4) the MPN of denitrifiers in hydrocarbon-amended microcosms. The results indicate that the total number of denitrifiers increased by an order of magnitude during nitrate-enhanced bioremediation in most samples. The number of total heterotrophs and JP-4-degrading microorganisms growing aerobically also increased. In addition, the first anaerobic protozoa associated with hydrocarbon-contaminated subsurface materials were detected

  17. Pathogen Decontamination of Food Crop Soil: A Review.

    Science.gov (United States)

    Gurtler, Joshua B

    2017-09-01

    The purpose of this review is to delineate means of decontaminating soil. This information might be used to mitigate soil-associated risks of foodborne pathogens. The majority of the research in the published literature involves inactivation of plant pathogens in soil, i.e., those pathogens harmful to fruit and vegetable production and ornamental plants. Very little has been published regarding the inactivation of foodborne human pathogens in crop soil. Nevertheless, because decontamination techniques for plant pathogens might also be useful methods for eliminating foodborne pathogens, this review also includes inactivation of plant pathogens, with appropriate discussion and comparisons, in the hopes that these methods may one day be validated against foodborne pathogens. Some of the major soil decontamination methods that have been investigated and are covered include chemical decontamination (chemigation), solarization, steaming, biofumigation, bacterial competitive exclusion, torch flaming, microwave treatment, and amendment with biochar. Other innovative means of inactivating foodborne pathogens in soils may be discovered and explored in the future, provided that these techniques are economically feasible in terms of chemicals, equipment, and labor. Food microbiology and food safety researchers should reach out to soil scientists and plant pathologists to create links where they do not currently exist and strengthen relationships where they do exist to take advantage of multidisciplinary skills. In time, agricultural output and the demand for fresh produce will increase. With advances in the sensitivity of pathogen testing and epidemiological tracebacks, the need to mitigate preharvest bacterial contamination of fresh produce will become paramount. Hence, soil decontamination technologies may become more economically feasible and practical in light of increasing the microbial safety of fresh produce.

  18. Leaching of human pathogens in repacked soil lysimeters and contamination of potato tubers under subsurface drip irrigation in Denmark

    DEFF Research Database (Denmark)

    Forslund, Anita; Plauborg, Finn; Andersen, Mathias Neumann

    2011-01-01

    , phage 28B was detected in low concentrations (2 pfu ml1) in leachate from both sandy loam soil and coarse sand lysimeters. After 27 days, phage 28B continued to be present in similar concentrations in leachate from lysimeters containing coarse sand, while no phage were found in lysimeters with sandy...

  19. Subsurface agricultural irrigation drainage: the need for regulation.

    Science.gov (United States)

    Lemly, A D

    1993-04-01

    Subsurface drainage resulting from irrigated agriculture is a toxic threat to fish and wildlife resources throughout the western United States. Studies by the U.S. Department of the Interior show that migratory waterfowl have been poisoned by drainwater contaminants on at least six national wildlife refuges. Allowing this poisoning to continue is a violation of the Migratory Bird Treaty Act under U.S. Federal law. Critical wetlands and waterfowl populations are threatened in both the Pacific and Central flyways. The public is also at risk and health warnings have been issued in some locations. Subsurface irrigation drainage is a complex effluent containing toxic concentrations of trace elements, salts, and nitrogenous compounds. Some of the contaminants are classified by the U.S. Environmental Protection Agency (EPA) as priority pollutants and they can be present in concentrations that exceed EPA's criteria for toxic waste. The on-farm drainage systems used to collect and transport this wastewater provide point-source identification as well as a mechanism for toxics control through the National Pollutant Discharge Elimination System (NPDES) permit process. A four-step approach is presented for dealing with irrigation drainage in an environmentally sound manner. This regulatory strategy is very similar to those commonly used for industrial discharges and includes site evaluation, contaminant reduction through NPDES, and compliance monitoring. The EPA must recognize subsurface irrigation drainage as a specific class of pollution subject to regulation under the NPDES process. Active involvement by EPA is necessary to ensure that adequate controls on this wastewater are implemented.

  20. Discriminative Random Field Models for Subsurface Contamination Uncertainty Quantification

    Science.gov (United States)

    Arshadi, M.; Abriola, L. M.; Miller, E. L.; De Paolis Kaluza, C.

    2017-12-01

    Application of flow and transport simulators for prediction of the release, entrapment, and persistence of dense non-aqueous phase liquids (DNAPLs) and associated contaminant plumes is a computationally intensive process that requires specification of a large number of material properties and hydrologic/chemical parameters. Given its computational burden, this direct simulation approach is particularly ill-suited for quantifying both the expected performance and uncertainty associated with candidate remediation strategies under real field conditions. Prediction uncertainties primarily arise from limited information about contaminant mass distributions, as well as the spatial distribution of subsurface hydrologic properties. Application of direct simulation to quantify uncertainty would, thus, typically require simulating multiphase flow and transport for a large number of permeability and release scenarios to collect statistics associated with remedial effectiveness, a computationally prohibitive process. The primary objective of this work is to develop and demonstrate a methodology that employs measured field data to produce equi-probable stochastic representations of a subsurface source zone that capture the spatial distribution and uncertainty associated with key features that control remediation performance (i.e., permeability and contamination mass). Here we employ probabilistic models known as discriminative random fields (DRFs) to synthesize stochastic realizations of initial mass distributions consistent with known, and typically limited, site characterization data. Using a limited number of full scale simulations as training data, a statistical model is developed for predicting the distribution of contaminant mass (e.g., DNAPL saturation and aqueous concentration) across a heterogeneous domain. Monte-Carlo sampling methods are then employed, in conjunction with the trained statistical model, to generate realizations conditioned on measured borehole data