Global integration of European tuna markets

Science.gov (United States)

Jiménez-Toribio, Ramòn; Guillotreau, Patrice; Mongruel, Rémi

2010-07-01

This paper evaluates the degree of integration between the world market and the major European marketplaces of frozen and canned tuna through both vertical and horizontal price relationships. Spatial linkages are investigated horizontally in order to estimate the connection between the European market and the world-wide market on the primary stage of the value chain. One of the key results is the high level of market integration at the ex-vessel stage, and the price leadership of yellowfin tuna over skipjack tuna. The same approach is applied at the ex-factory level. Basically, the European market for final goods appears to be segmented between the Northern countries consuming low-priced canned skipjack tuna imported from Asia (mainly Thailand) and the Southern countries (Italy, Spain) processing and importing yellowfin-based products sold at higher prices. France appears to be an intermediate market where both products are consumed. The former market is found to be well integrated to the world market and can be considered to be competitive, but there is a suspicion of market power being exercised on the latter. Price relationships are therefore tested vertically between the price of frozen tuna paid by the canneries and the price of canned fish in both Italy and France. The two species show an opposite pattern in prices transmission along the value chain: price changes along the chain are far better transmitted for the “global” skipjack tuna than for the more “European” yellowfin tuna. The results are discussed, along with their implications for the fishing industry.

Mercury in canned tuna marketed in Cartagena, Colombia, and estimation of human exposure.

Science.gov (United States)

Alcala-Orozco, Maria; Morillo-Garcia, Yenifer; Caballero-Gallardo, Karina; Olivero-Verbel, Jesus

2017-12-01

The presence of mercury in tuna is ubiquitous, so national authorities should guarantee food safety of canned tuna available on the market, according to legal regulations. The objective of this survey was to assess total mercury (T-Hg) levels in brands of canned tuna marketed in Cartagena, Colombia, and determine fish consumption-based risks after ingestion. For that purpose, 252 cans of tuna were collected, representing 6 brands (A-F), in 2 mediums (water and oil). Mean T-Hg levels were 0.66 ± 0.05 and 0.61 ± 0.05 µg g -1 wet weight, for water and oil, respectively. High T-Hg concentrations were measured in brands B and D. Only brands E and F guaranteed low risk for Hg-related health problems. According to Colombia's legislation, 15.5% of the samples exceeded the maximum level of 1.0 µg g -1 for mercury and 18.3% was higher than limits as recommended by Food and Agriculture Organization/World Health Organisation (0.5 µg g -1 ). It was concluded that consumption of canned tuna could represent a high risk for the Colombian population, particularly to vulnerable groups.

Visualizing the Food-Web Effects of Fishing for Tunas in the Pacific Ocean

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Jefferson T. Hinke

2004-06-01

Full Text Available We use food-web models to develop visualizations to compare and evaluate the interactions of tuna fisheries with their supporting food webs in the eastern tropical Pacific (ETP and the central north Pacific (CNP Oceans. In the ETP and CNP models, individual fisheries use slightly different food webs that are defined by the assemblage of targeted tuna species. Distinct energy pathways are required to support different tuna species and, consequently, the specific fisheries that target different tuna assemblages. These simulations suggest that catches of tunas, sharks, and billfishes have lowered the biomass of the upper trophic levels in both systems, whereas increases in intermediate and lower trophic level animals have accompanied the decline of top predators. Trade-offs between fishing and predation mortality rates that occur when multiple fisheries interact with their respective food webs may lead to smaller changes in biomass than if only the effect of a single fishery is considered. Historical simulations and hypothetical management scenarios further demonstrate that the effects of longline and purse seine fisheries have been strongest in upper trophic levels, but that lower trophic levels may respond more strongly to purse-seine fisheries. The apex predator guild has responded most strongly to longlining. Simulations of alternative management strategies that attempt to rebuild shark and billfish populations in each ecosystem reveal that (1 changes in longlining more effectively recover top predator populations than do changes in purse seining and (2 restrictions on both shallow-set longline gear and shark finning may do more to recover top predators than do simple reductions in fishing effort.

Addition of different tuna meal levels to pizza dough

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Daniel Abreu Vasconcelos Campelo

Full Text Available Abstract The aim of this study was to develop pizza dough with different levels of tuna meal (Tunnus spp.. In order to produce tuna meal, tuna torsos without fins were used, cooked for 1 hour, pressed, milled and dehydrated for 24 hours at 60 °C. Pizza dough was produced without (0% or with the addition of 5, 10, 15 and 20% of tuna meal, calculated based on the quantity of wheat flour. The tuna meal and different pizza pastries were analyzed for moisture content, crude protein, total lipids, ash, carbohydrates, caloric value and fatty acid profiles. Microbiological and sensory analyses were also carried out on the pizza pastries. The increasing addition of tuna meal resulted in gains in the crude protein (10.89 to 18.94%, total lipid (4.63 to 5.89% and ash (2.54 to 3.54% contents of the pizza pastries, not influencing the moisture content or caloric value. The inclusion of tuna meal linearly increased the quantity of n-3 series fatty acids in the pizza pastry, from 1.56 to 5.93 g/kg with the addition of 20% tuna meal. The ratio between the polyunsaturated and saturated fatty acids in the tuna meal and pizza pastries varied from 1.21 to 1.85. The microbiological analyses showed that the pizza pastries were produced under proper hygiene conditions. It was also observed that the addition of 5 to 20% of tuna meal to the pizza pastry did not significantly (p>0.05 alter the parameters of aroma, flavor, overall impression and purchase intention. It was therefore concluded that the addition of 5 to 20% tuna meal is effective in improving the nutritional value and fatty acid profile of pizza pastry.

STOMACH CONTENT OF THREE TUNA SPECIES IN THE EASTERN INDIAN OCEAN

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Bram Setyadji

2012-12-01

Full Text Available Feeding habit of tuna in Indian Ocean has been described around Sri Lanka, Indian Waters, Andaman Sea, western Indian Ocean (Seychelles Islands, western equatorial Indian Ocean whereas the tunas feeding habit study in Eastern Indian Oceanis merely in existence. The purpose of this study is to investigate the stomach content of three tuna species (bigeye tuna, yellowfin tuna, and skipjack tuna, apex predator in the southern part of Eastern Indian Ocean. The study was conducted in March – April, 2010 on the basis of catches of commercial tuna longline vessel based in Port of Benoa. A total of 53 individual fishes were collected, consisting of bigeye tuna (Thunnus obesus, yellowfin tuna (Thunnus albacores, and skipjack tuna (Katsuwonus pelamis. Stomach specimens were collected and analyzed.Analysis was conducted on the basis of index of preponderance method. The diet of the three tuna species showed fishes as the main diet (56–82%, followed by cephalopods (squids as the complementary diet (0–8%, and crustaceans (shrimps as the additional diet (2–4%. Fish prey composed of 6 families i.e. Alepisauridae, Bramidae, Carangidae, Clupeidae, Engraulidae, and Scombridae.

Effects of frozen storage on survival of Staphylococcus aureus and enterotoxin production in precooked tuna meat.

Science.gov (United States)

Wu, Xulei; Su, Yi-Cheng

2014-08-01

This study investigated the survival of Staphylococcus aureus in precooked tuna meat for producing canned products during frozen storage (-20 ± 2 °C) as well as its growth and enterotoxin production at 35 to 37 °C after the storage. Samples (50 ± 5 g) of precooked albacore (loin, chunk, and flake) and skipjack (chunk and flake) tuna were inoculated with 5 enterotoxin-producing strains of S. aureus at a level of approximately 3.5 log CFU/g and individually packed in a vacuum bag after 3 h incubation at 35 to 37 °C. Vacuum-packed samples were stored in a freezer (-20 ± 2 °C) for 4 wk. The frozen samples were then thawed in 37 °C circulating water for 2 h and incubated at 35 to 37 °C for 22 h. Populations of S. aureus in all precooked tuna samples decreased slightly (canned tuna within 6 to 8 h of thawing to avoid product spoilage and potential enterotoxin production by S. aureus in contaminated precooked tuna meat. © 2014 Institute of Food Technologists®

KEBIJAKAN PENGELOLAAN HASIL TANGKAPAN SAMPINGAN TUNA LONGLINE DI SAMUDERA HINDIA

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Budi Nugraha

2013-11-01

Full Text Available Tuna longline atau rawai tuna merupakan salah satu alat tangkap yang sangat efektif untuk menangkap tuna. Selain efektif alat tangkap ini juga merupakan alat tangkap yang selektif terhadap hasil tangkapannya. Namun demikian, alat tangkap ini masih menimbulkan suatu masalah dimana ikan hasil tangkapan yang diperoleh tidak semuanya merupakan hasil tangkapan utama (target species, ada sebagian yang merupakan hasil tangkapan sampingan (by-catch. Sebagian besar hasil tangkapan sampingan tuna longline memiliki nilai ekonomis, hanya jenis pari lumpur dan ikan naga yang tidak memiliki nilai ekonomis. Namun demikian, justru yang tidak memiliki nilai ekonomis mendominasi hasil tangkapan sampingan pada perikanan tuna longline. Oleh karena itu perlu adanya tindak lanjut dengan menyusun peraturan atau regulasi yang terkait dengan pengelolaan ikan hasil tangkapan sampingan dan pengelolaan yang benar terhadap hasil tangkapan tersebut beserta habitatnya agar terjaga kelestarian sumberdayanya dan juga tetap menjadi sumber pendapatan masyarakat.Tulisan ini membahas secara ringkas tentang isu hasil tangkapan sampingan pada perikanan tuna longline, komposisi jenisnya, pemanfaatannya dan kebijakannya. Tuna longline is one of the most effective fishing gears to catch tuna. In addition, this fishing gear is selective to catch tuna. However, this gear is still causing a problem where some species other than their target species were caught as by-catch. Most of by-catch species from the tuna longliners have an economic value, except pelagic stingrays and lancetfish. In fact, these by-catch species (non economical-valued species dominated the longline catch. Therefore, it is needed to develop rules or regulations related to the management of the fish by-products, and properly manage the fishing activities on these by-catch species and habitat preservation to preserve its resources and also remain as a source of income. This paper briefly discusses the issue of by

Modelling retention and dispersion mechanisms of bluefin tuna eggs and larvae in the Northwest Mediterranean Sea

DEFF Research Database (Denmark)

Mariani, Patrizio; MacKenzie, Brian; Iudicone, D.

2010-01-01

Knowledge of early life history of most fish species in the Mediterranean Sea is sparse and processes affecting their recruitment are poorly understood. This is particularly true for bluefin tuna, Thunnus thynnus, even though this species is one of the world's most valued fish species. Here we...... develop, apply and validate an individually based coupled biological-physical oceanographic model of fish early life history in the Mediterranean Sea. We first validate the general structure of the coupled model with a 12-day Lagrangian drift study of anchovy (Engraulis encrasicolus) larvae in the Catalan...... mesoscale processes in the Balearic area and thus potentially affect bluefin tuna larvae. These modelling approaches can increase understanding of bluefin tuna recruitment processes and eventually contribute to management of bluefin tuna fisheries....

Bioenergetics, Trophic Ecology, and Niche Separation of Tunas.

Science.gov (United States)

Olson, R J; Young, J W; Ménard, F; Potier, M; Allain, V; Goñi, N; Logan, J M; Galván-Magaña, F

Tunas are highly specialized predators that have evolved numerous adaptations for a lifestyle that requires large amounts of energy consumption. Here we review our understanding of the bioenergetics and feeding dynamics of tunas on a global scale, with an emphasis on yellowfin, bigeye, skipjack, albacore, and Atlantic bluefin tunas. Food consumption balances bioenergetics expenditures for respiration, growth (including gonad production), specific dynamic action, egestion, and excretion. Tunas feed across the micronekton and some large zooplankton. Some tunas appear to time their life history to take advantage of ephemeral aggregations of crustacean, fish, and molluscan prey. Ontogenetic and spatial diet differences are substantial, and significant interdecadal changes in prey composition have been observed. Diet shifts from larger to smaller prey taxa highlight ecosystem-wide changes in prey availability and diversity and provide implications for changing bioenergetics requirements into the future. Where tunas overlap, we show evidence of niche separation between them; resources are divided largely by differences in diet percentages and size ranges of prey taxa. The lack of long-term data limits the ability to predict impacts of climate change on tuna feeding behaviour. We note the need for systematic collection of feeding data as part of routine monitoring of these species, and we highlight the advantages of using biochemical techniques for broad-scale analyses of trophic relations. We support the continued development of ecosystem models, which all too often lack the regional-specific trophic data needed to adequately investigate climate and fishing impacts. © 2016 Elsevier Ltd. All rights reserved.

Mercury in canned tuna: white versus light and temporal variation

International Nuclear Information System (INIS)

Burger, Joanna; Gochfeld, Michael

2004-01-01

There are abundant data and advisories for mercury levels in wild fish, but far fewer for commercial fish that compose a large majority of the fish most people eat. Until recently, relatively little attention has been devoted to examining mercury in canned tuna, despite its great importance in human diets. There is substantial media coverage of the benefits and risk from fish consumption, but few peer-reviewed data on canned tuna, the most commonly consumed fish in the United States. In this paper, we examine the levels of total mercury in canned tuna obtained from a New Jersey grocery store from 1998 to 2003, looking for temporal consistency within this data set and particularly for comparison with the Food and Drug Administration's 1991 study. We analyzed 168 cans individually for total mercury. All values are reported as parts per million (=μg/g) on a wet weight basis. In a subset of samples analyzed for total and inorganic mercury, the inorganic mercury was below detection levels; hence at least 89% of the mercury can be considered methylmercury. We found that white-style tuna had significantly more total mercury (mean 0.407 ppm) than light-style tuna (mean 0.118 ppm), presumably reflecting that 'white' tuna is albacore, a species relatively larger than the skipjack tuna, which is commonly available as 'light' or 'chunk light'. The maximum mercury in a can was 0.997 ppm, but 25% of white tuna samples exceeded 0.5 ppm. Data suggest a slight increase in levels since 1991, and mercury levels were significantly higher in 2001 than in other years. The mean level of mercury in white tuna (mean 0.407 ppm) was significantly higher than the mean value of 0.17 ppm currently used by the U.S. Food and Drug Administration (FDA) in its risk assessment and public information. There were no significant differences in mercury levels in tuna packed in oil compared to water. Draining contents had no effect on mercury levels, and the fluid, both oil and water, contained little

Polychlorinated biphenyls and organochlorine pesticides as intrinsic tracer tags of foraging grounds of bluefin tuna in the northwest Atlantic Ocean

International Nuclear Information System (INIS)

Deshpande, Ashok D.; Dickhut, Rebecca M.; Dockum, Bruce W.; Brill, Richard W.; Farrington, Cameron

2016-01-01

from offshore Virginia, Gulf of Maine, and Nova Scotia could have had extended residences and foraging within the areas of capture to be able to sustain the stable signatures of PCB congeners. The DFA cluster results supported the concept of metapopulation theory of spatial ecology comprising discrete aggregates of local populations of bluefin tuna where the desired prey species are likely to be abundant. Despite their highly migratory trait and endothermic advantage of foraging in broader and colder habitats, the movements and mixing across the aggregation ranges related to feeding did not appear to be extensive. Advancement in the understanding of bluefin tuna population dynamics beyond the coarse concept of trans-Atlantic migrations to the metapopulation hypothesis provides a novel exploratory tool in the stock assessment and resource management. As the chemical tracer tags are fortified naturally and document the time- and space-integrated foraging history, they promise to serve as the low-cost alternatives to the high-cost electronic data recording tags employed for addressing the migratory movements of bluefin tuna. Between the different potential chemical tracer tags, a distinct advantage of PCB/pesticide analysis over the otolith micro-constituent analysis is that the muscle tissue of a given individual bluefin tuna can be sampled repeatedly for PCB/pesticide analysis over different spatial and temporal scales in a non-lethal manner. - Highlights: •Unique PCB and pesticide tags in bluefin tuna provided a low-cost method for studying migration, mixing, and feeding. •t-nonachlor/PCB 153 ratios suggested that one juvenile and one large bluefin tuna made east to west Atlantic migrations. •Discriminant function analysis of PCB signatures suggested extended residence of bluefin tuna on a given foraging ground. •PCB congener based groupings suggested metapopulation behavior of bluefin tuna with limited inter-population exchange. •A possibility of muscle

Feeding Partitioning among Tuna Taken in Surface and Mid-water ...

African Journals Online (AJOL)

Crustaceans were the almost exclusive food source of surface-swimming bigeye tuna, with the stomatopod (Natosquilla investigatoris) being the sole prey item recorded in this category. The diet of deep-swimming yellowfin tuna was balanced between epipelagic fish, crustaceans and cephalopods. Bigeye tuna fed ...

Development of functional canned and pouched tuna products added inulin for commercial production.

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Rueangwatcharin, U; Wichienchot, S

2015-08-01

Four formulas of canned tuna in spring water and tuna in mayonnaise and pouched tuna in salad cream and tuna in thousand island cream with added inulin were developed for commercial production. The effects of the addition of a prebiotic (inulin, Orafti®-HP) on the color and sensory properties of these products were studied. For inulin concentrations studied (3, 5, 7 and 10 %, w/w) caused more intensed yellow and red colors. Hedonic sensory values of tuna packed in spring water and in mayonnaise showed no significant differences (p > 0.05) among products with different inulin addition levels (3, 5, 7 and 10 %, w/w) in terms of color, flavor, sweetness and overall characteristics. However, when packed in thousand island cream, significant differences (p < 0.05) in color and overall characteristics were found when inulin was added higher than 7 %. Tuna in salad cream showed significant differences (p < 0.05) in color, flavor, sweetness and overall characteristics at higher than 7 % inulin. The panelists showed acceptable overall liking scores at upto 7 % inulin of all tuna products. The thermal sterilization process resulted in approximately 20 % decrease in final inulin content. The calculated residual fructans of finished products at shelf life of 3 years were 3.01, 2.78, 2.90 and 2.84 % for tuna in spring water, tuna in mayonnaise, tuna in thousand island and tuna in salad cream, respectively. Considering formula cost in a commercial production and the recommended daily intake (RDI) of inulin in the finished product at end of shelf life (≥3 g/d), an addition of 5 % inulin for tuna in spring water and 7 % inulin for tuna in mayonnaise, tuna in thousand island and tuna in salad cream are recommended.

GENETIC IDENTIFICATION FOR TUNA AND RAINBOW RUNNER CAPTURE IN NORTH BALI WATERS

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Gusti Ngurah Permana

2006-06-01

Full Text Available Gondol Research Institute for Mariculture identification of tuna and rainbow runner was an objective in this current study. Samples of five species were collected from territorial water of North Bali. The method used in this study was allozyme electrophoresis. The results showed that buffer of CAPM-6 (citric acid aminoprophylmorpholine resulted in a sharp and clear banding pattern. The species could be differentiated in six diagnostic isozyme patterns Idh* (isocitrate dehydrogenase, 6Pgd* (6 phosphogluconate dehydrogenase, Gpi* (glucose phosphate isomerase, Mdh* (malate dehydrogenase, Est* (esterase, and Sp* (sarcoplasmic protein. All species were in Hardy-weinberg equilibrium. Heterozygosities of species were ranged from 0.00 to 0.099. Yellowfin tuna has the highest heterozigosity compared with the other species. Clustering samples according to pairs revealed that genetic distance of Bullet tuna (A. rochei and Eastern little tuna (E. affinis had small value (0.001. By contrast, the largest value was observed between yellowfin tuna, T. albacares and rainbow runner, E. bipunnulata (0.007. This value indicated that Bullet tuna (A. rochei and Eastern little tuna (E. affinis closed relation, while among yellowfin tuna, skipjack tuna, and rainbow runner, were separated phylogenically.

Spawning of bluefin tuna in the black sea: historical evidence, environmental constraints and population plasticity

DEFF Research Database (Denmark)

Mackenzie, Brian R; Mariani, Patrizio

2012-01-01

The lucrative and highly migratory Atlantic bluefin tuna, Thunnus thynnus (Linnaeus 1758; Scombridae), used to be distributed widely throughout the north Atlantic Ocean, Mediterranean Sea and Black Sea. Its migrations have supported sustainable fisheries and impacted local cultures since antiquity...

Baja visión en la población pediátrica de Las Tunas Low vision of the pediatric population in Las Tunas province

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Yunia Herbania Labrada Rodríguez

2006-12-01

Full Text Available Se presentan los resultados de un estudio descriptivo en 35 pacientes ciegos y débiles visuales matriculados en la Escuela de Ciegos de la provincia Las Tunas. Los pacientes fueron agrupados según categoría visual, sexo, y etiología de baja visión. El sexo masculino fue el más afectado, el mayor número de pacientes eran débiles visuales y las etiologías más frecuentes de baja visión fueron la catarata congénita y la retinopatía de la prematuridadThe results of a descriptive study of 35 blind and impaired vision patients, who study at the School for Blind People in Las Tunas province were presented in this paper. The patients were grouped according to their visual category, sex and etiology of low vision. Males were the most affected, the highest number of patients had impaired vision and the most common causes of low vision were congenital cataract and prematurity retinopathy

Modelling retention and dispersion mechanisms of bluefin tuna eggs and larvae in the northwest Mediterranean Sea

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Mariani, Patrizio; MacKenzie, Brian R.; Iudicone, Daniele; Bozec, Alexandra

2010-07-01

Knowledge of early life history of most fish species in the Mediterranean Sea is sparse and processes affecting their recruitment are poorly understood. This is particularly true for bluefin tuna, Thunnus thynnus, even though this species is one of the world’s most valued fish species. Here we develop, apply and validate an individually based coupled biological-physical oceanographic model of fish early life history in the Mediterranean Sea. We first validate the general structure of the coupled model with a 12-day Lagrangian drift study of anchovy ( Engraulis encrasicolus) larvae in the Catalan Sea. The model reproduced the drift and growth of anchovy larvae as they drifted along the Catalan coast and yielded similar patterns as those observed in the field. We then applied the model to investigate transport and retention processes affecting the spatial distribution of bluefin tuna eggs and larvae during 1999-2003, and we compared modelled distributions with available field data collected in 2001 and 2003. Modelled and field distributions generally coincided and were patchy at mesoscales (10s-100s km); larvae were most abundant in eddies and along frontal zones. We also identified probable locations of spawning bluefin tuna using hydrographic backtracking procedures; these locations were situated in a major salinity frontal zone and coincided with distributions of an electronically tagged bluefin tuna and commercial bluefin tuna fishing vessels. Moreover, we hypothesized that mesoscale processes are responsible for the aggregation and dispersion mechanisms in the area and showed that these processes were significantly correlated to atmospheric forcing processes over the NW Mediterranean Sea. Interannual variations in average summer air temperature can reduce the intensity of ocean mesoscale processes in the Balearic area and thus potentially affect bluefin tuna larvae. These modelling approaches can increase understanding of bluefin tuna recruitment processes and

Thawing of Frozen Tuna Meat

Science.gov (United States)

Tanaka, Takeo; Nishiwaki, Kôji; Kakuda, Kitonari; Tomimatsu, Takao

Frozen southern bluefin tuna meat discolors easily and sometimes contracts when thawed caused by thaw rigor. These phenomenon often become problematic in the transaction or handling of this kind of frozen tuna. Frozen meat blocks of southern Bluefin tuna were thawed separately by air thawing, running water thawing and microwave thawing. Changes occurring during thawing were checked for meat color by met-myoglobin ratio determination and for contract by microscopic observation. Results are as follows : (1) Discoloration scarcely occurred in the process of running water thawing (at 10°C for 50 min, or at 0°C for 6 hr). (2) No contraction was observed during thawing with running water described above and air thawing (at 18-20°C for 6 hr). (3) Discoloration and contraction seemed to be minimized, as to latently contractile blocks, when meat temperature passed through rapidly between -10°C and -5°C, and slowly (for 5-6 hr) between -5°C and -1°C. When the block was originally not contractile, discloration was minimized by rising meat temperature rapidly from -10°C to -l°C.

Trophic impact of Atlantic bluefin tuna migrations in the North Sea

DEFF Research Database (Denmark)

Mariani, Patrizio; Andersen, Ken Haste; Lindegren, Martin

2017-01-01

and the stability of the fish community. The impact of a migrating top-predator is investigated here for Atlantic bluefin tuna in the North Sea. Bluefin tuna has been absent from the region for half-century, but recent years have seen recovery of migrations and a return of bluefin tuna in the area. We use a size...

Projecting the impacts of climate change on skipjack tuna abundance and spatial distribution.

Science.gov (United States)

Dueri, Sibylle; Bopp, Laurent; Maury, Olivier

2014-03-01

Climate-induced changes in the physical, chemical, and biological environment are expected to increasingly stress marine ecosystems, with important consequences for fisheries exploitation. Here, we use the APECOSM-E numerical model (Apex Predator ECOSystem Model - Estimation) to evaluate the future impacts of climate change on the physiology, spatial distribution, and abundance of skipjack tuna, the worldwide most fished species of tropical tuna. The main novelties of our approach lie in the mechanistic link between environmental factors, metabolic rates, and behavioral responses and in the fully three dimensional representation of habitat and population abundance. Physical and biogeochemical fields used to force the model are provided by the last generation of the IPSL-CM5 Earth System Model run from 1990 to 2100 under a 'business-as-usual' scenario (RCP8.5). Our simulations show significant changes in the spatial distribution of skipjack tuna suitable habitat, as well as in their population abundance. The model projects deterioration of skipjack habitat in most tropical waters and an improvement of habitat at higher latitudes. The primary driver of habitat changes is ocean warming, followed by food density changes. Our projections show an increase of global skipjack biomass between 2010 and 2050 followed by a marked decrease between 2050 and 2095. Spawning rates are consistent with population trends, showing that spawning depends primarily on the adult biomass. On the other hand, growth rates display very smooth temporal changes, suggesting that the ability of skipjack to keep high metabolic rates in the changing environment is generally effective. Uncertainties related to our model spatial resolution, to the lack or simplification of key processes and to the climate forcings are discussed. © 2013 John Wiley & Sons Ltd.

Characterization of the Boundary Layer on Full-Scale Bluefin Tuna

Science.gov (United States)

Amaral, Brian; Cipolla, Kimberly; Henoch, Charles

2014-11-01

The physics that enable tuna to cross large expanses of ocean while feeding and avoiding predators is not presently understood, and could involve complex control of turbulent boundary layer transition and drag reduction. Typical swimming speeds of Bluefin tuna are 1-2 m/s, but can be higher during strong accelerations. The goal of this work is to experimentally determine the approximate lateral location at which transition to turbulence occurs on the tuna for various speeds. The question is whether laminar flow or an advanced propulsion mechanism (or both) allows them to swim at high speeds. Uncertainties include the surface roughness of the skin, local favorable and adverse pressure gradients, and discontinuities such as the open mouth or juncture at the fins. Historically, much of the fluid mechanics work in the area of fish locomotion has focused on vortex shedding issues rather than the boundary layer. Here, the focus is obtaining information on the boundary layer characteristics of a rigid tuna model. A full scale model of a Pacific Bluefin tuna was fabricated using a mold made from an actual deceased tuna, preserving the surface features and details of the appendages. The model was instrumented with 32 wall pressure sensors and experiments performed in a tow tank. Results from flow visualization, drag and wall pressure measurements over a range of speeds and varying angles of attack will be presented.

Economic Impacts of Climate Change on Tuna Fisheries in Fiji Islands and Kiribati

Energy Technology Data Exchange (ETDEWEB)

Aaheim, Asbjoern; Sygna, Linda

2000-06-01

This paper discusses the possible economic consequences of a change in the tuna fisheries in the Pacific Ocean resulting from climate change. On the background of Lehodey's (2000) study of potential changes in the tuna fisheries, we survey possible economic impacts in terms of quantities and values and give examples of macroeconomic impacts. The two main effects of climate change on tuna fishing are likely to be a decline in the total stock and a migration of the stock westwards. This will lead to various changes in the catch in different countries. The price of the fish in the export market may also change as a result. The Pacific islands are generally dependent on fisheries, and may therefore be vulnerable to these changes, although some will probably gain while others will lose. Based on a very simple macroeconomic model, it is shown that the resulting effects for the national economy in general may diverge substantially from the expected. This applies, in particular, if the national economies are inflexible and a large part of the population relies on subsistence production, which is the case for many developing countries. (author)

Depressed resilience of bluefin tuna in the western atlantic and age truncation.

Science.gov (United States)

Secor, D H; Rooker, J R; Gahagan, B I; Siskey, M R; Wingate, R W

2015-04-01

Following intense overfishing in the 1970s, the western stock of Atlantic bluefin tuna (Thunnus thynnus) experienced a long period of depressed abundance, which has been attributed to failure of the population to periodically produce large numbers of juveniles, the western stock mixing with the more highly exploited eastern stock (fisheries in the Northeast Atlantic Ocean and Mediterranean Sea), and regime shift in the population's ecosystem resulting in lower replacement rates. To evaluate the presence of relatively strong years of juvenile production, we analyzed age structure from a recent sample of otoliths (ear stones) collected from the western stock (2011-2013, North Carolina, U.S.A., winter fishery). Mixing levels for the recent sample were analyzed using otolith stable isotopes to test whether age structure might be biased through immigration of eastern stock bluefin tuna. Age structure from historical samples collected from United States and Canadian fisheries (1975-1981) was compared with more recent samples (1996-2007) to examine whether demographic changes had occurred to the western stock that might have disrupted juvenile production. Relatively high juvenile production occurred in 2003, 2005, and 2006. Otolith stable isotope analysis showed that these recruitments were mostly of western stock origin. However, these high recruitments were >2-fold less than historical recruitment. We found substantial age truncation in the sampled fisheries. Half the historical sample was >20 years old (mean age = 20.1 [SD 3.7]; skewness = -0.3), whereas 20 years old (mean age = 13.4 [SD 3.8]; skewness = 1.3). Loss of age structure is consistent with changes in fishing selectivity and trends in the stock assessment used for management. We propose that fishing, as a forcing variable, brought about a threshold shift in the western stock toward lower biomass and production, a shift that emulates the regime shift hypothesis. An abbreviated reproductive life span

Polychlorinated biphenyls and organochlorine pesticides as intrinsic tracer tags of foraging grounds of bluefin tuna in the northwest Atlantic Ocean.

Science.gov (United States)

Deshpande, Ashok D; Dickhut, Rebecca M; Dockum, Bruce W; Brill, Richard W; Farrington, Cameron

2016-04-15

from offshore Virginia, Gulf of Maine, and Nova Scotia could have had extended residences and foraging within the areas of capture to be able to sustain the stable signatures of PCB congeners. The DFA cluster results supported the concept of metapopulation theory of spatial ecology comprising discrete aggregates of local populations of bluefin tuna where the desired prey species are likely to be abundant. Despite their highly migratory trait and endothermic advantage of foraging in broader and colder habitats, the movements and mixing across the aggregation ranges related to feeding did not appear to be extensive. Advancement in the understanding of bluefin tuna population dynamics beyond the coarse concept of trans-Atlantic migrations to the metapopulation hypothesis provides a novel exploratory tool in the stock assessment and resource management. As the chemical tracer tags are fortified naturally and document the time- and space-integrated foraging history, they promise to serve as the low-cost alternatives to the high-cost electronic data recording tags employed for addressing the migratory movements of bluefin tuna. Between the different potential chemical tracer tags, a distinct advantage of PCB/pesticide analysis over the otolith micro-constituent analysis is that the muscle tissue of a given individual bluefin tuna can be sampled repeatedly for PCB/pesticide analysis over different spatial and temporal scales in a non-lethal manner. Published by Elsevier Ltd.

Global pollution monitoring of butyltin compounds using skipjack tuna as a bioindicator

International Nuclear Information System (INIS)

Ueno, D.; Inoue, S.; Takahashi, S.; Ikeda, K.; Tanaka, H.; Subramanian, A.N.; Fillmann, G.; Lam, P.K.S.; Zheng, J.; Muchtar, M.; Prudente, M.; Chung, K.; Tanabe, S.

2004-01-01

Global pollution monitoring of butyltin in offshore water and open sea were conducted using skipjack tuna as a bioindicator. - Butyltin compounds (BTs) including mono- (MBT), di- (DBT), tri-butyltin (TBT) and total tin (ΣSn), were determined in the liver of skipjack tuna (Katsuwonus pelamis) collected from Asian offshore waters (off-Japan, the Japan Sea, off-Taiwan, the East China Sea, the South China Sea, off-Philippines, off-Indonesia, the Bay of Bengal), off-Seychelles, off-Brazil and open seas (the North Pacific). BTs were detected in all the skipjack tuna collected, suggesting widespread contamination of BTs even in offshore waters and open seas on a global scale. Considering specific accumulation, Sex-, body length- differences and migration of skipjack tuna did not seem to affect BT concentrations, indicating rapid reflection of the pollution levels in seawater where and when they were collected. Skipjack tuna is a suitable bioindicator for monitoring the global distribution of BTs in offshore waters and open seas. High concentrations of BTs were observed in skipjack tuna from offshore waters around Japan, a highly developed and industrialized region (up to 400 ng/g wet weight). Moreover skipjack tuna collected from offshore waters around Asian developing countries also revealed the levels comparable to those in Japan (up to 270 ng/g wet weight) which may be due to the recent improvement in economic status in Asian developing countries. High percentages (almost 90%) of BTs in total tin (ΣSn: sum of inorganic tin+organic tin) were found in the liver of skipjack tuna from offshore waters around Asian developing countries. This finding suggests that the anthropogenic BTs represent the major source of Sn accumulation in skipjack tuna from these regions

Global pollution monitoring of butyltin compounds using skipjack tuna as a bioindicator

Energy Technology Data Exchange (ETDEWEB)

Ueno, D.; Inoue, S.; Takahashi, S.; Ikeda, K.; Tanaka, H.; Subramanian, A.N.; Fillmann, G.; Lam, P.K.S.; Zheng, J.; Muchtar, M.; Prudente, M.; Chung, K.; Tanabe, S

2004-01-01

Global pollution monitoring of butyltin in offshore water and open sea were conducted using skipjack tuna as a bioindicator. - Butyltin compounds (BTs) including mono- (MBT), di- (DBT), tri-butyltin (TBT) and total tin ({sigma}Sn), were determined in the liver of skipjack tuna (Katsuwonus pelamis) collected from Asian offshore waters (off-Japan, the Japan Sea, off-Taiwan, the East China Sea, the South China Sea, off-Philippines, off-Indonesia, the Bay of Bengal), off-Seychelles, off-Brazil and open seas (the North Pacific). BTs were detected in all the skipjack tuna collected, suggesting widespread contamination of BTs even in offshore waters and open seas on a global scale. Considering specific accumulation, Sex-, body length- differences and migration of skipjack tuna did not seem to affect BT concentrations, indicating rapid reflection of the pollution levels in seawater where and when they were collected. Skipjack tuna is a suitable bioindicator for monitoring the global distribution of BTs in offshore waters and open seas. High concentrations of BTs were observed in skipjack tuna from offshore waters around Japan, a highly developed and industrialized region (up to 400 ng/g wet weight). Moreover skipjack tuna collected from offshore waters around Asian developing countries also revealed the levels comparable to those in Japan (up to 270 ng/g wet weight) which may be due to the recent improvement in economic status in Asian developing countries. High percentages (almost 90%) of BTs in total tin ({sigma}Sn: sum of inorganic tin+organic tin) were found in the liver of skipjack tuna from offshore waters around Asian developing countries. This finding suggests that the anthropogenic BTs represent the major source of Sn accumulation in skipjack tuna from these regions.

DISTRIBUSI SPASIAL DAN TEMPORAL IKAN TUNA MATA BESAR (Thunnus obesus DI SAMUDERA HINDIA BAGIAN TIMUR

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Irwan Jatmiko

2016-03-01

Full Text Available Ikan tuna mata besar (Thunnus obesus merupakan salah satu hasil tangkapan yang penting bagi industri perikanan di Indonesia. Penelitian ini bertujuan untuk mengetahui distribusi spasial dan temporal ikan tuna mata besar di Samudera Hindia Bagian Timur. Pengumpulan data dilakukan oleh pemantau ilmiah (scientific observers pada kapal rawai tuna yang berbasis di Pelabuhan Benoa Bali, mulai Agustus 2005 hingga November 2013. Ikan tuna mata besar yang tertangkap sebanyak 5.340 ekor dan dari jumlah tersebut sebanyak 5.253 ekor diukur panjangnya. Distribusi spasial ikan tuna mata besar yang tertangkap rawai tuna Indonesia membentang dari 0°-33° LS dan 76°-128° BT. Persentase tertinggi ikan tuna mata besar dengan panjang >110 cm (Lm terdapat di sebelah barat Sumatera Barat dan di sebelah selatan Jawa Timur. Laju pancing menurut bulan penagkapan menunjukkan perbedaan yang nyata dengan laju pancing tertinggi terjadi pada Agustus sebesar 0,54 ekor/100 mata pancing. Nelayan direkomendasikan untuk melakukan operasi penangkapan di daerah dengan persentase ukuran panjang ikan tuna mata besar >110 cm (Lm tertinggi, sehingga species tersebut mempunyai kesempatan untuk melakukan pemijahan minimal sekali sepanjang hidupnya. Hal ini dimaksudkan untuk menjaga kelestarian sumberdaya ikan tuna mata besar di Samudera Hindia. Big eye tuna (Thunnus obesus is one of the important catch of the fishing industry in Indonesia. The study is aimed to investigate the spatial and temporal distribution of big eye tuna in the Eastern Indian Ocean. Data were collected by scientific observers on tuna long line vessels which were mainly based in Port of Benoa Bali from August 2005 to November 2013. Total number of big eye tuna caught were 5,340 individuals and as many as 5,253 of them were measured in length. The spatial distribution of  big eye tuna caught by Indonesia tuna long line are in the area between 0°-33° S and 76°-128° E. The highest percentage of big eye tuna with

50 CFR 216.95 - Official mark for “Dolphin-safe” tuna products.

Science.gov (United States)

2010-10-01

... 50 Wildlife and Fisheries 7 2010-10-01 2010-10-01 false Official mark for âDolphin-safeâ tuna... AND IMPORTING OF MARINE MAMMALS Dolphin Safe Tuna Labeling § 216.95 Official mark for “Dolphin-safe... Department of Commerce that may be used to label tuna products that meet the “dolphin-safe” standards set...

Skipjack tuna as a bioindicator of contamination by perfluorinated compounds in the oceans.

Science.gov (United States)

Hart, Kimberly; Kannan, Kurunthachalam; Tao, Lin; Takahashi, Shin; Tanabe, Shinsuke

2008-09-15

Perfluorinated chemicals (PFCs) have emerged as global environmental contaminants. Studies have reported the widespread occurrence of PFCs in biota from marine coastal waters and in remote polar regions. However, few studies have reported the distribution of PFCs in biota from offshore waters and open oceans. In this study, concentrations of nine PFCs were determined in the livers of 60 skipjack tuna (Katsuwonus pelamis) collected from offshore waters and the open ocean along the Pacific Rim, including the Sea of Japan, the East China Sea, the Indian Ocean, and the Western North Pacific Ocean, during 1997-1999. At least one of the nine PFCs was found in every tuna sample analyzed. Overall, perfluorooctanesulfonate (PFOS) and perfluoroundecanoic acid (PFUnDA) were the predominant compounds found in livers of tuna at concentrations of ocean locations, concentrations of PFUnDA were greater than the concentrations of PFOS. The profiles and concentrations of PFCs in tuna livers suggest that the sources in East Asia are dominated by long-chain perfluorocarboxylates, especially PFUnDA. High concentrations of PFUnDA in tuna may indicate a shift in sources of PFCs in East Asia. The spatial distribution of PFOS in skipjack tuna reflected the concentrations previously reported in seawater samples from the Pacific and Indian Oceans, suggesting that tuna are good bioindicators of pollution by PFOS. Despite its predominance in ocean waters, PFOA was rarely found in tuna livers, indicative of the low bioaccumulation potential of this compound. Our study establishes baseline concentrations of PFCs in skipjack tuna from the oceans of the Asia-Pacific region, enabling future temporal trend studies of PFCs in oceans.

Perilaku Tuna Fungsi Auditor: Pengujian atas Karakteristik Personal dan Penilai Kinerja Auditor

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Aprina Nugrahesthy Sulistya Hapsari

2016-12-01

  Fenomena perilaku tuna fungsi yang dilakukan oleh auditor makin dianggap lazim di lingkup audit. Hubungan antara karakteristik personal, karakteristik non personal dan perilaku tuna fungsi menjadi sesuatu hal yang menarik untuk diteliti. Penelitian ini menguji hubungan antara karakteristik personal berupa locus of control, tingkat kinerja pribadi karyawan, komitmen organisasi dan turnover intention dan penilai kinerja auditor sebagai faktor diluar karakteristik personal terhadap penerimaan perilaku tuna fungsi dalam lingkup audit. Pengumpulan data dilakukan melalui kuisioner dari responden yaitu auditor di KAP Kota Semarang dan Surakarta dengan metode convenience sampling karena populasi auditor yang bekerja tidak diketahui dengan pasti. Analisis data dengan menggunakan Model Persamaan Struktural. Hasil dari pengujian hipotesis mengindikasikan bahwa tidak ada hubungan antara karakteristik personal dengan penerimaan perilaku tuna fungsi dalam ruang lingkup audit. Sementara itu di lain sisi terdapat hubungan antara penilai kinerja auditor dengan penerimaan perilaku tuna fungsi dalam ruang lingkup audit.

Keragaman Spesies Ikan Tuna di Pasar Ikan Kedonganan Bali dengan Analisis Sekuen Kontrol Daerah Mitokondria DNA (SPECIES DIVERSITY OF TUNA FISH USING MITOCHONDRIAL DNA CONTROL REGION SEQUENCE ANALYSIS AT KEDONGANAN FISH MARKET

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Daud Steven Triyomi Hariyanto

2015-10-01

Full Text Available Tuna is an export commodity which has very high economic value. However, some tuna speciesare threatened with extinction. The purpose of this study was to identify the tuna species that aresold in Kedonganan Fish Market. The research method was polymerase chain reaction technique(PCR using the marker sequence mitochondrial DNA control region. Samples were obtained fromthe Fish Market tuna Kedonganan, Kuta, Badung, Bali. The total number of samples are 28specimens. Sequence from each sample was obtained through sequencing techniques. Sequencesobtained were run in BLAST (Basic Local Alignment Search Tool and subsequently analyzed withMEGA 5 for species confirmation. Three species of tuna that are identified in the Kedonganan FishMarket is: Thunnus albacares, T. obesus, and Katsuwonus pelamis. All three species have highgenetic variation HD = 1. This study needed to be continued with more number of samples todetermine the species of tuna sold in Kedonganan Fish Market.

Application of the Oxidation-Reduction Potential (ORP) for Pre-grading Tuna Freshness On-board

Science.gov (United States)

Cheevaporanapivat, Mongkol; Sakai, Hisaharu; Mine, Yuuji; Watanabe, Manabu; Suzuki, Toru

Application of ORP as a rapid indicator for grading tuna's freshness on the ship was studied. The long line trawling process was used for catching the sample tuna in the South Pacific Ocean. All captured sample tuna were weighed, gender identified and investigated for their mortality, then measured ORP and K value. Three species of tuna were caught: blue marlin (Makaira mazara), yellow fin tuna (Thunnus albacares), and swordfish (Xiphia gladius). Most of the fish captured were male and they had been dead after picking onboard. The measured ORP values of blue marlin varied in the range of 0.295-0.362 Volt, with pH between 5.35-5.84. Both ORP and pH of swordfish was similar to that of blue marlin. But for yellow fin tuna, the ORP value was about the same as blue marlin while its pH was significantly higher. ORP value in all species tended to increase with pH of the fish meat decrease. It is interesting that ORP value of tuna increased in correlation with K value. These results suggested that ORP and pH change, which are measured in the short time, are the effective indicators for grading tuna's freshness on-board.

Predicting the Distribution of Yellowfin Tuna in Philippine Waters

Science.gov (United States)

Perez, G. J. P.; Leonardo, E. M.

2015-12-01

The Philippines is considered as a major tuna producer in the Western and Central Pacific Ocean, both for domestic consumption and on industrial scale. However, with the ever-increasing demand of growing population, it has always been a challenge to achieve sustainable fishing. The creation of satellite-derived potential fishing zone maps is a technology that has been adopted by advanced countries for almost three decades already and has led to reduction in search times by up to 40%. In this study, a Generalized Additive Model (GAM) is developed to predict the distribution of the Yellowfin tuna species in seas surrounding the Philippines based on the Catch-Per-Unit-Effort (CPUE) index. Level 3 gridded chlorophyll-a and sea surface temperature from the Moderate Resolution Imaging Spectroradiometer (MODIS) aboard the Aqua satellite of the National Aeronautics and Space Administration (NASA) are the main input parameters of the model. Chlorophyll-a is linked with the presence of phytoplankton, which indicates primary productivity and suggests potential regions of fish aggregation. Fish also prefers to stay in regions where the temperature is stable, thus the sea surface temperature fronts serve as a guide to locate concentrations of fish school. Historical monthly tuna catch data from Western and Central Pacific Commissions (WCPFC) is used to train the model. The resulting predictions are converted to potential fishing zone maps and are evaluated within and beyond the historical time range of the training data used. Diagnostic tests involving adjusted R2 value, GAM residual plots and root mean square error value are used to assess the accuracy of the model. The generated maps were able to confirm locations of known tuna fishing grounds in Mindanao and other parts of the country, as well us detect their seasonality and interannual variability. To improve the performance of the model, ancillary data such as surface winds reanalysis from National Centers for

A validated methodology for genetic identification of tuna species (genus Thunnus.

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Jordi Viñas

2009-10-01

Full Text Available Tuna species of the genus Thunnus, such as the bluefin tunas, are some of the most important and yet most endangered trade fish in the world. Identification of these species in traded forms, however, may be difficult depending on the presentation of the products, which may hamper conservation efforts on trade control. In this paper, we validated a genetic methodology that can fully distinguish between the eight Thunnus species from any kind of processed tissue.After testing several genetic markers, a complete discrimination of the eight tuna species was achieved using Forensically Informative Nucleotide Sequencing based primarily on the sequence variability of the hypervariable genetic marker mitochondrial DNA control region (mtDNA CR, followed, in some specific cases, by a second validation by a nuclear marker rDNA first internal transcribed spacer (ITS1. This methodology was able to distinguish all tuna species, including those belonging to the subgenus Neothunnus that are very closely related, and in consequence can not be differentiated with other genetic markers of lower variability. This methodology also took into consideration the presence of introgression that has been reported in past studies between T. thynnus, T. orientalis and T. alalunga. Finally, we applied the methodology to cross-check the species identity of 26 processed tuna samples.Using the combination of two genetic markers, one mitochondrial and another nuclear, allows a full discrimination between all eight tuna species. Unexpectedly, the genetic marker traditionally used for DNA barcoding, cytochrome oxidase 1, could not differentiate all species, thus its use as a genetic marker for tuna species identification is questioned.

Ecological role of bluefin tuna (Thunnus thynnus) fish farms for associated wild fish assemblages in the Mediterranean Sea.

Science.gov (United States)

Stagličić, Nika; Šegvić-Bubić, Tanja; Ugarković, Pero; Talijančić, Igor; Žužul, Iva; Tičina, Vjekoslav; Grubišić, Leon

2017-12-01

The ecological effects of tuna fish farms are largely undocumented. This study confirmed their high capacity to attract surrounding wild fish. The aggregation effect persisted year round, without detectable seasonal differences. Farm impact was restricted to close proximity of the sea cages, and was more prominent over the bottom than in the water column strata. Tuna fish farms proved to be high energy trophic resources, as indicated by the enhanced fitness status of two focal species, bogue and seabream. Under abundant food supply, seabream appear to allocate the majority of energy reserves to gonad development. Farm associated bogue had greater parasite loads, with no detrimental effect on fitness status. Overall, tuna fish farms can be regarded as population sources for aggregated wild fish, and under the no fishing conditions within the leasehold areas, can serve as functional marine protected areas. Copyright © 2017 Elsevier Ltd. All rights reserved.

Penanganan penyu yang tertangkap rawai tuna di Samudera Hindia

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Budi Nugraha

2017-03-01

Full Text Available Turtle is one of the vulnerable of megafauna and as a by-catch in tuna longline fisheries, however, management practices have not been done yet. This paper described the efforts to avoid the capture of turtles on the tuna longline fishery and its handling recommendation. It has been written based on the research results and observer programs of activities that have been implemented since 2005. It’s also including a literature review rules and regulations regarding the management of sea turtles. The record results during 2005 - 2014 conducted by an independent scientific board on tuna longline in the Indian Ocean with 72 times number of setting and 89,441number of hooks. There are 105 turtles caught, which are leatherback, olive ridley turtles, hawksbill, loggerhead sea turtles as well as the unknown green turtle where the current status of turtles in the Indian Ocean is in a state of vulnerable, endangered, critically even endangered. The olive ridley turtle, loggerhead and leatherback turtles are in a vulnerable status. While, the green turtles are in a state endangered and even hawksbill in a state extremely endangered. Policy measures for handling of turtles in tuna longline fishery needs to be taken in order to be implemented include the socialization of the use of intensified circle hooks and if necessary the government issued regulations regarding the use of circle hooks, the implementation of the placement of fishing monitoring (observer aboard the tuna longline in order to assist the skippers monitoring the catch of turtles and turtle handling training for the skippers and crew in order to hold the caught turtles can be handled directly on the boat to reduce the mortality turtles which can be released back into the sea alive. Penyu merupakan salah satu biota yang rawan punah dan sebagai hasil tangkapan sampingan pada perikanan rawai tuna dimana pengelolaannya belum banyak dilakukan. Makalah ini membahas tentang upaya bagaimana

Hubungan Antara Body Image Dan Self-esteem Pada Dewasa Awal Tuna Daksa

OpenAIRE

Sari, Dahlia Nur Permata

2012-01-01

Penelitian ini meneliti mengenai pengaruh body image terhadap selfesteem pada dewasa awal tuna daksa. Hipotesis pada penelitian ini adalah adanya hubungan positif antara body image dan self-esteem pada dewasa awal tuna daksa. Semakin positif body image maka semakin tinggi self-esteem yang dimiliki, begitu juga sebaliknya, semakin negatif body image maka semakin rendah self-esteem yang dimiliki. Sampel penelitian sebanyak 30 dewasa awal tuna daksa yang memiliki cacat tubuh seteleh kelahiran. D...

Some epidemiological and clinical characteristics of solid malignant tumors in children from Las Tunas

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Silvio Laffita Estévez

2015-11-01

Full Text Available Background: cancer has kept up as the second cause of death in Las Tunas pediatric population.Objective: to characterize clinical and epidemiological variables of the cases diagnosed with solid malignant tumors in children seen and treated in the onco-pediatric consultation of “Mártires de Las Tunas” Pediatric Hospital from 2010 to 2014.Methods: a descriptive and retrospective study was carried out in 62 patients with solid malignant tumors in the pediatric population of Las Tunas province, from January, 2010 to December, 2014. The variables considered were: presumptive diagnosis, age, family history of tumors, clinical signs of alarm related to the tumor at the moment of diagnosis and investigations to confirm the diagnosis.  Results: non-Hodgkin lymphoma was the most frequently diagnosed tumor, with a 19, 35% of the patients. The most affected age group was between 11 and 14 years old, with a 33, 87%. The 16, 13% of the patients had family history of solid malignant tumors. The most frequent form of presentation was the abdominal tumor, with 29, 03 %. Abdominal ultrasound and computerized axial tomography were the most used complementary diagnostic means, both in the 17, 74% of the patients. Biopsy was used to confirm the 96, 77% of the cases.Conclusions: the clinical and epidemiological variables were characterized in pediatric patients diagnosed with solid malignant tumors in Las Tunas. Children between 11 and 14 years old and family history of malignant tumors were the most significant findings.

Effect of tuna skin gelatin-based coating enriched with seaweed extracts on the quality of tuna fillets during storage at 4 °C

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Milene Vala

2017-10-01

Full Text Available Nowadays, consumers demand high quality food products with an extended shelf-life without chemical additives. Edible coatings (EC containing natural compounds are a promising preservation technology for raw seafood without compromising fresh-like appeal and nutritional content.The aim of this work was to evaluate the effect of Thunnus obesus skin gelatin-based EC containing Codium spp. or Fucus vesiculosus extracts on raw tuna preservation. Three gelatin-based EC (gelatin (5 % + glycerol (25 %; gelatin (5 % + Codium spp. (1 % + glycerol (25 %; gelatin (5 % + Fucus vesiculosus (1 % + glycerol (25 % were applied directly on the surface of tuna fillets. Functional properties of gelatin and gelatin-based EC containing seaweed extracts were also studied. The gelatin was extracted by an acid-swelling process in the presence/absence of pepsin, followed by subsequent heating/refrigeration, after a pre-treatment with NaOH. The type of acid, temperature and concentration of NaOH greatly influence the process yield. The higher extraction yield was achieved using acetic acid in the presence of pepsin by subsequent refrigeration, especially when skins were previously treated with NaOH (0.2 M. Tuna quality was assessed over 12 days of storage at 4 ± 1 °C in terms of chemical and microbial indices. Results showed that tuna skin gelatin-based EC avoids tuna deterioration. Microbial growth, assessed by total viable counts, and total volatile basic nitrogen were maintained below the maximum limits recommended, contrarily to the control. Additionally, the use of EC increased the stability of red colour during storage. 

Evolutionary changes of multiple visual pigment genes in the complete genome of Pacific bluefin tuna

OpenAIRE

Nakamura, Yoji; Mori, Kazuki; Saitoh, Kenji; Oshima, Kenshiro; Mekuchi, Miyuki; Sugaya, Takuma; Shigenobu, Yuya; Ojima, Nobuhiko; Muta, Shigeru; Fujiwara, Atushi; Yasuike, Motoshige; Oohara, Ichiro; Hirakawa, Hideki; Chowdhury, Vishwajit Sur; Kobayashi, Takanori

2013-01-01

Tunas are migratory fishes in offshore habitats and top predators with unique features. Despite their ecological importance and high market values, the open-ocean lifestyle of tuna, in which effective sensing systems such as color vision are required for capture of prey, has been poorly understood. To elucidate the genetic and evolutionary basis of optic adaptation of tuna, we determined the genome sequence of the Pacific bluefin tuna (Thunnus orientalis), using next-generation sequencing tec...

Oligonucleotide indexing of DNA barcodes: identification of tuna and other scombrid species in food products

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Botti Sara

2010-08-01

Full Text Available Abstract Background DNA barcodes are a global standard for species identification and have countless applications in the medical, forensic and alimentary fields, but few barcoding methods work efficiently in samples in which DNA is degraded, e.g. foods and archival specimens. This limits the choice of target regions harbouring a sufficient number of diagnostic polymorphisms. The method described here uses existing PCR and sequencing methodologies to detect mitochondrial DNA polymorphisms in complex matrices such as foods. The reported application allowed the discrimination among 17 fish species of the Scombridae family with high commercial interest such as mackerels, bonitos and tunas which are often present in processed seafood. The approach can be easily upgraded with the release of new genetic diversity information to increase the range of detected species. Results Cocktail of primers are designed for PCR using publicly available sequences of the target sequence. They are composed of a fixed 5' region and of variable 3' cocktail portions that allow amplification of any member of a group of species of interest. The population of short amplicons is directly sequenced and indexed using primers containing a longer 5' region and the non polymorphic portion of the cocktail portion. A 226 bp region of CytB was selected as target after collection and screening of 148 online sequences; 85 SNPs were found, of which 75 were present in at least two sequences. Primers were also designed for two shorter sub-fragments that could be amplified from highly degraded samples. The test was used on 103 samples of seafood (canned tuna and scomber, tuna salad, tuna sauce and could successfully detect the presence of different or additional species that were not identified on the labelling of canned tuna, tuna salad and sauce samples. Conclusions The described method is largely independent of the degree of degradation of DNA source and can thus be applied to

Oligonucleotide indexing of DNA barcodes: identification of tuna and other scombrid species in food products.

Science.gov (United States)

Botti, Sara; Giuffra, Elisabetta

2010-08-23

DNA barcodes are a global standard for species identification and have countless applications in the medical, forensic and alimentary fields, but few barcoding methods work efficiently in samples in which DNA is degraded, e.g. foods and archival specimens. This limits the choice of target regions harbouring a sufficient number of diagnostic polymorphisms. The method described here uses existing PCR and sequencing methodologies to detect mitochondrial DNA polymorphisms in complex matrices such as foods. The reported application allowed the discrimination among 17 fish species of the Scombridae family with high commercial interest such as mackerels, bonitos and tunas which are often present in processed seafood. The approach can be easily upgraded with the release of new genetic diversity information to increase the range of detected species. Cocktail of primers are designed for PCR using publicly available sequences of the target sequence. They are composed of a fixed 5' region and of variable 3' cocktail portions that allow amplification of any member of a group of species of interest. The population of short amplicons is directly sequenced and indexed using primers containing a longer 5' region and the non polymorphic portion of the cocktail portion. A 226 bp region of CytB was selected as target after collection and screening of 148 online sequences; 85 SNPs were found, of which 75 were present in at least two sequences. Primers were also designed for two shorter sub-fragments that could be amplified from highly degraded samples. The test was used on 103 samples of seafood (canned tuna and scomber, tuna salad, tuna sauce) and could successfully detect the presence of different or additional species that were not identified on the labelling of canned tuna, tuna salad and sauce samples. The described method is largely independent of the degree of degradation of DNA source and can thus be applied to processed seafood. Moreover, the method is highly flexible

Relative growth pattern and hard tissue of vertebral centra by microradiography of bluefin tuna

International Nuclear Information System (INIS)

Kubo, Y.; Asano, H.

1989-01-01

To clarify the growth feature and the structure of hard tissue, we studied the vertebral centrum of three species, bluefin tuna Thunnus thynnus, bigeye tuna T. obesus and skipjack Katsuwonus pelamis (BL: 44.2, 39.5 and 40.0cm respectively). We examined the ratio of cetrum length to diameter in each vertebral centrum and obtained the value of 0.9-1.3 in most centra among three species. This indicates that the examined species belong to the equivalent type of the relative growth pattern of vertebral centra. The hard tissue was observed by microradiography, with the longitudinal and cross sections (about 100 μm) cut through the center of notochordal pore. The major centra of the vertebral column were composed of characteristic simple structure like a cross, when seen in the microradiographs of cross sections. Microradiographs indicated that the bone has complicated canals with minute spaces like the bone cavities

Modelling the spatial behaviour of a tropical tuna purse seine fleet.

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Tim K Davies

Full Text Available Industrial tuna fisheries operate in the Indian, Atlantic and Pacific Oceans, but concerns over sustainability and environmental impacts of these fisheries have resulted in increased scrutiny of how they are managed. An important but often overlooked factor in the success or failure of tuna fisheries management is the behaviour of fishers and fishing fleets. Uncertainty in how a fishing fleet will respond to management or other influences can be reduced by anticipating fleet behaviour, although to date there has been little research directed at understanding and anticipating the human dimension of tuna fisheries. The aim of this study was to address gaps in knowledge of the behaviour of tuna fleets, using the Indian Ocean tropical tuna purse seine fishery as a case study. We use statistical modelling to examine the factors that influence the spatial behaviour of the purse seine fleet at broad spatiotemporal scales. This analysis reveals very high consistency between years in the use of seasonal fishing grounds by the fleet, as well as a forcing influence of biophysical ocean conditions on the distribution of fishing effort. These findings suggest strong inertia in the spatial behaviour of the fleet, which has important implications for predicting the response of the fleet to natural events or management measures (e.g., spatial closures.

DAYA SAING EKSPOR TUNA KALENG INDONESIA DI UNI EROPA TAHUN 2003-2013

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Umar Wahono

2017-06-01

Full Text Available Perbedaan tarif yang diberikan antara Indonesia yang lebih tinggi sebesar 20.5% dibandingkan dengan negara pesaing utamanya yang tergabung dalang Africa, Caribbean, Pasific (ACP Countries dengan pelayanan tarif impor hingga 0% ke pasar Uni Eropa (UE. Keadaan ini mampu menyebabkan menghilangnya distorsi perbedaan harga sesungguhnya yang seharusnya menjadi keuntungan lebih atas keunggulan komparatif yang dimiliki. Hal ini mampu melemahkan daya saing komoditi ekspor akibat dampak kenaikan harga terhadap tarif. Penelitian ini bertujuan untuk gambaran daya saing komoditas tuna kaleng Indonesia terhadap negara pesaingnya dipasar UE pada periode 2003-2013. Metode yang digunakan dalam penelitin ini adalah metode Revealed Comparative Advantage (RCA yang kemudian nilai RCA dikomparasikan tiap-tiap negara pengekspor utama tuna kaleng di pasar UE untuk melihat posisi daya saing relatifnya. Sedangkan untuk mendekomposisikan determinan pertumbuhan ekspor tuna kaleng Indonesia ke UE digunankan metode Constant Market Share (CMS. Hasil perhitungan nilai RCA tuna kaleng Indonesia periode 2003-2013 di pasar UE memiliki daya saing dengan rata-rata nilai RCA 4.27. Namun masih dibawah rata-rata nilai RCA negara ACP Countries. Perbedaan pelayanan tarif impor oleh UE untuk komoditas tuna kaleng Indonesia tidak berdampak terhadap penurunan daya saing. The difference between the rates given Indonesia which is higher by 20.5% compared to its main competitor countries that joined the mastermind Africa, Caribbean, Pacific (ACP Countries with service import tariffs to 0% to the European Union (EU. This situation is capable of causing the disappearance of the distortion of the true price difference should be more advantages over comparative advantage. It is capable of undermining the competitiveness of export commodities due to the impact of price increases on tariffs. This study aims to illustrate the competitiveness of commodities Indonesian canned tuna to the EU market of

Radiation hydrolysate of tuna cooking juice with enhanced antioxidant properties

International Nuclear Information System (INIS)

Choi, Jong-il; Sung, Nak-Yun; Lee, Ju-Woon

2012-01-01

Tuna protein hydrolysates are of increasing interest because of their potential application as a source of bioactive peptides. Large amounts of tuna cooking juice with proteins and extracts are produced during the process of tuna canning, and these cooking juice wastes cause environmental problems. Therefore, in this study, cooking juice proteins were hydrolyzed by irradiation for their utilization as functional additives. The degree of hydrolysis of tuna cooking juice protein increased from 0% to 15.1% at the absorbed doses of 50 kGy. To investigate the antioxidant activity of the hydrolysate, it was performed the ferric reducing antioxidant power (FRAP) assay, and the lipid peroxidation inhibitory and superoxide radical scavenging activities were measured. The FRAP values increased from 1470 μM to 1930 μM and IC 50 on superoxide anion was decreased from 3.91 μg/mL to 1.29 μg/mL at 50 kGy. All of the antioxidant activities were increased in the hydrolysate, suggesting that radiation hydrolysis, which is a simple process that does not require an additive catalysts or an inactivation step, is a promising method for food and environmental industries. - Highlights: ► Radiation was applied for the hydrolysis of tuna cooking juice protein. ► The degree of hydrolysis were increased by irradiation and the antioxidant activity of hydrolysate was higher than protein. ► This result suggest that radiation is useful method for the hydrolysis of protein.

Polimorfisme Enzim Glucose-6-Phosphate Isomerase pada Tiga Populasi Tuna Sirip Kuning (Thunnus albacares)

OpenAIRE

Permana, Gusti Ngurah; Hutapea, Jhon H.; Moria, Sari Budi; Haryanti, Haryanti

2006-01-01

Samples of yellowfin tuna (Thunnus albacares) were taken from three locations Bali, North Sulawesi and North Maluku. The glucose-6-phosphate isomerase (GPI) was analyzed from liver using allozyme electrophoresis method. Polymorphism of GPI enzyme was observed and four alleles (A, B ,C, D) were found in Bali population, three alleles (A,B,C) were found in North Maluku and North Sulawesi populations. Heterozygosity values, from Bali, North Maluku and North Sulawesi were 0.419; 0.417; 0.143 resp...

First attempt to assess the viability of bluefin tuna spawning events in offshore cages located in an a priori favourable larval habitat

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Patricia Reglero

2013-10-01

Full Text Available Most of the Atlantic bluefin tuna caught by the purse-seine fleet in the Mediterranean Sea are transferred alive into transport cages and towed to coastal facilities where they are fattened. This major fishery is targeting aggregations of reproductive bluefin tuna that continue spawning within the transport cages. Our study is the first attempt to assess the viability of the spawning events within transport cages placed offshore in a priori favourable locations for larval survival. The study was conducted in June 2010 in the Balearic Sea, a main spawning area for bluefin tuna in the Mediterranean. The location of two transport cages, one with wild and one with captive tuna, coincide with the situation of the chlorophyll front using satellite imagery as a proxy for the salinity front between resident surface waters and those of recent Atlantic origin. The results showed that bluefin tuna eggs were spawned almost every day within the two cages but few or no larvae were found. The expected larval densities estimated after applying mortality curves to the daily egg densities observed in the cages were higher than the sampled larval densities. The trajectories of the eggs after hatching estimated from a particle tracking model based on observed geostrophic currents and a drifter deployed adjacent to the cage suggest that larvae were likely to be caught close to the cages within the sampling dates. Spawning events in captive tuna in transport cages may hatch into larvae though they may experience higher mortality rates than expected in natural populations. The causes of the larval mortality are further discussed in the text. Such studies should be repeated in other spawning areas in the Mediterranean if spawning in cages located offshore in areas favourable a priori for larval survival is likely to be considered a management measurement to minimize the impact of purse-seine fishing on tuna.

Radiation hydrolysate of tuna cooking juice with enhanced antioxidant properties

Science.gov (United States)

Choi, Jong-il; Sung, Nak-Yun; Lee, Ju-Woon

2012-08-01

Tuna protein hydrolysates are of increasing interest because of their potential application as a source of bioactive peptides. Large amounts of tuna cooking juice with proteins and extracts are produced during the process of tuna canning, and these cooking juice wastes cause environmental problems. Therefore, in this study, cooking juice proteins were hydrolyzed by irradiation for their utilization as functional additives. The degree of hydrolysis of tuna cooking juice protein increased from 0% to 15.1% at the absorbed doses of 50 kGy. To investigate the antioxidant activity of the hydrolysate, it was performed the ferric reducing antioxidant power (FRAP) assay, and the lipid peroxidation inhibitory and superoxide radical scavenging activities were measured. The FRAP values increased from 1470 μM to 1930 μM and IC50 on superoxide anion was decreased from 3.91 μg/mL to 1.29 μg/mL at 50 kGy. All of the antioxidant activities were increased in the hydrolysate, suggesting that radiation hydrolysis, which is a simple process that does not require an additive catalysts or an inactivation step, is a promising method for food and environmental industries.

76 FR 13583 - Atlantic Highly Migratory Species; Atlantic Bluefin Tuna Quotas and Atlantic Tuna Fisheries...

Science.gov (United States)

2011-03-14

... address concerns raised in a recent decision by a NOAA Administrative Law Judge (see Atlantic Tunas Transfer at Sea section for case reference). NMFS has prepared a draft Environmental Assessment (EA... subtraction of these allocations directly from the TAC, the recommendation allocates the remainder to the UK...

Discrimination of juvenile yellowfin (Thunnus albacares and bigeye (T. obesus Tunas using mitochondrial DNA control region and liver morphology.

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Ivane R Pedrosa-Gerasmio

Full Text Available Yellowfin tuna, Thunnus albacares (Bonnaterre, 1788 and bigeye tuna, Thunnus obesus (Lowe, 1839 are two of the most economically important tuna species in the world. However, identification of their juveniles, especially at sizes less than 40 cm, is very difficult, often leading to misidentification and miscalculation of their catch estimates. Here, we applied the mitochondrial DNA control region D-loop, a recently validated genetic marker used for identifying tuna species (Genus Thunnus, to discriminate juvenile tunas caught by purse seine and ringnet sets around fish aggregating devices (FADs off the Southern Iloilo Peninsula in Central Philippines. We checked individual identifications using the Neighbor-Joining Method and compared results with morphometric analyses and the liver phenotype. We tested 48 specimens ranging from 13 to 31 cm fork length. Morpho-meristic analyses suggested that 12 specimens (25% were bigeye tuna and 36 specimens (75% were yellowfin tuna. In contrast, the genetic and liver analyses both showed that 5 specimens (10% were bigeye tuna and 43 (90% yellowfin tuna. This suggests that misidentification can occur even with highly stringent morpho-meristic characters and that the mtDNA control region and liver phenotype are excellent markers to discriminate juveniles of yellowfin and bigeye tunas.

Quality Changes of Light Flesh Tuna at Water of Tomini Bay, Gorontalo Province

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Wila Rumina Nento

2015-01-01

Full Text Available Tuna is one of the mainstay fisheries commodities that involve many of the ordinary fishermen. The handling usually still not follows the principles of good handling that causing the poor quality as the result.The aims of this research were to analyze and to determine the quality of tuna meat (the abdominal wall, dorsal fin, and caudal fin. Raw material yellowfin tuna meat prepared for the light, the meat section of the abdominal wall, dorsal fin, and caudal fin. The result of organoleptic analysis showed that the tuna meat was above the minimum value for the criteria of fresh fish. The result of TVB analysis showed that the meat on the caudal fin had the highest value and significantly different with the other, but still exist on the safe limits and on the fresh category. For the result of analysis in histamine, it shown that at the fourth hour the meat at the dorsal fin had the histamine content which were above the minimum that have been recommended. For the result of analysis in peroxide number, it shown that the tuna meat did not sustain the fat damage until the fourth hour after the catching process. And for the result of analysis in TPC, it showed that at the fourth hour the tuna meat on the pectoral fin had the highest number of total colony and significantly different with the other.Keywords: handling, histamine, light flesh, microbiology, yellowfin

Etiologi Penyebab Malformasi Tunas Ranting Kakao di Kulonprogo, DIY dan Segayung, Jawa Tengah

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Susamto Somowiyarjo

2014-12-01

insektisida hasilnya tunas muda yang tumbuh berikutnya tidak menunjukan adanya gejala malformasi. Diduga bahwa malformasi pada tunas dan ranting tersebut disebabkan oleh racun yang ditularkan oleh serangga. Penelitian lebih lanjut untuk karakterisasi penyebab penyakit secara molekuler saat ini sedang dilakukan.

Projections of climate-driven changes in tuna vertical habitat based on species-specific differences in blood oxygen affinity.

Science.gov (United States)

Mislan, K A S; Deutsch, Curtis A; Brill, Richard W; Dunne, John P; Sarmiento, Jorge L

2017-10-01

Oxygen concentrations are hypothesized to decrease in many areas of the ocean as a result of anthropogenically driven climate change, resulting in habitat compression for pelagic animals. The oxygen partial pressure, pO 2 , at which blood is 50% saturated (P 50 ) is a measure of blood oxygen affinity and a gauge of the tolerance of animals for low ambient oxygen. Tuna species display a wide range of blood oxygen affinities (i.e., P 50 values) and therefore may be differentially impacted by habitat compression as they make extensive vertical movements to forage on subdaily time scales. To project the effects of end-of-the-century climate change on tuna habitat, we calculate tuna P 50 depths (i.e., the vertical position in the water column at which ambient pO 2 is equal to species-specific blood P 50 values) from 21st century Earth System Model (ESM) projections included in the fifth phase of the Climate Model Intercomparison Project (CMIP5). Overall, we project P 50 depths to shoal, indicating likely habitat compression for tuna species due to climate change. Tunas that will be most impacted by shoaling are Pacific and southern bluefin tunas-habitat compression is projected for the entire geographic range of Pacific bluefin tuna and for the spawning region of southern bluefin tuna. Vertical shifts in P 50 depths will potentially influence resource partitioning among Pacific bluefin, bigeye, yellowfin, and skipjack tunas in the northern subtropical and eastern tropical Pacific Ocean, the Arabian Sea, and the Bay of Bengal. By establishing linkages between tuna physiology and environmental conditions, we provide a mechanistic basis to project the effects of anthropogenic climate change on tuna habitats. Published 2017. This article is a U.S. Government work and is in the public domain in the USA.

FLUKTUASI DAN KOMPOSISI HASIL TANGKAPAN TUNA NERITIK TERTANGKAP JARING INSANG DI PERAIRAN LAUT CINA SELATAN

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Arief Wujdi

2016-03-01

Full Text Available Saat ini tuna neritik merupakan komoditas penting perikanan di Indonesia, namun ketersediaan data dan informasi hasil tangkapan jenis tuna ini masih tergolong kurang. Penelitian ini bertujuan untuk memperoleh informasi mengenai sebaran daerah penangkapan, fluktuasi hasil tangkapan tuna neritik yang tertangkap jaring insang yang beroperasi di Laut Cina Selatan. Pengumpulan data dilakukan melalui program enumerasi monitoring hasil tangkapan harian di Pemangkat pada tahun 2011-2012. Hasil menunjukkan daerah penangkapan tersebar di perairan Laut Cina Selatan pada koordinat 01°03’ LS-04°57’ LU; dan 104°65’-110°00’ BT. Hasil tangkapan jenis tuna neritik menunjukan variasi yang cenderung sama dimana puncak hasil tangkapan terjadi pada bulan Oktober dan November. Pola CPUE berfluktuasi dan cenderung mengalami peningkatan dan puncaknya terjadi pada bulan November 2011 dan 2012, yaitu 402,85 dan 444,57 kg/hari/trip. Secara statistik hasil tangkapan pada periode 2011-2012 tidak berbeda nyata (p<0,05. Komposisi hasil tangkapan bulanan jenis tuna neritik bervariasi berdasarkan atas spesies yang didominasi oleh Euthynnus affinis (49,7% diikuti dengan Thunnus tonggol (33,4%; Scomberomorus commerson (15,9%; dan Scomberomorus guttatus (1%. Kelimpahan Euthynnus affinis terjadi pada musim timur hingga musim peralihan 2 (Juni- November, sedangkan kelimpahan Thunnus tonggol terjadi pada musim barat (Januari-Februari. Nowadays, neritic tuna just become an important commodity Indonesia. However, the information about catch of tuna neritic species in Indonesia still quite lacks. This This study aims to obtain information about catch fluctuation, monthly catch per unit of effort, and catch composition of neritic tuna species caught by gill net operated in the South China Sea. Data was collected by daily catch monitoring program by enumerator in Pemangkat during period 2011-2012. The result showed that gillnetter fishing ground is scattered between 01°03�

CONCENTRATION AND RECOVERY OF PROTEIN FROM TUNA COOKING JUICE BY FORWARD OSMOSIS

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KHONGNAKORN W.

2016-07-01

Full Text Available Tuna cooking processing plants generate large amount of cooking juice containing a significant content of protein. Recovery and concentrating process of this valuable compound together with a low energy consumption process are of interest regarding full utilization concept and green process approach. Forward osmosis (FO was employed in this work to recover and concentrate tuna cooking juice. FO process could increase the protein concentration up to 9% with an average permeate flux of 2.54 L/m2h. The permeate flux however tended to decrease as protein concentration increased due to the impact of osmotic pressure of the feed and fouling on the membrane surface. Since tuna cooking juice consists of protein and minerals, membrane analyses indicated that fouling was more severe compared to the fouling caused by standard bovine serum albumin pure protein. However, the presence of minerals rendered it a quicker and lower energy process by comparison. These results indicated that FO is a promising technique in the recovery and concentration of tuna cooking juice protein.

Global trophic ecology of yellowfin, bigeye, and albacore tunas: Understanding predation on micronekton communities at ocean-basin scales

Science.gov (United States)

Duffy, Leanne M.; Kuhnert, Petra M.; Pethybridge, Heidi R.; Young, Jock W.; Olson, Robert J.; Logan, John M.; Goñi, Nicolas; Romanov, Evgeny; Allain, Valerie; Staudinger, Michelle D.; Abecassis, Melanie; Choy, C. Anela; Hobday, Alistair J.; Simier, Monique; Galván-Magaña, Felipe; Potier, Michel; Ménard, Frederic

2017-06-01

Predator-prey interactions for three commercially valuable tuna species: yellowfin (Thunnus albacares), bigeye (T. obesus), and albacore (T. alalunga), collected over a 40-year period from the Pacific, Indian, and Atlantic Oceans, were used to quantitatively assess broad, macro-scale trophic patterns in pelagic ecosystems. Analysis of over 14,000 tuna stomachs, using a modified classification tree approach, revealed for the first time the global expanse of pelagic predatory fish diet and global patterns of micronekton diversity. Ommastrephid squids were consistently one of the top prey groups by weight across all tuna species and in most ocean bodies. Interspecific differences in prey were apparent, with epipelagic scombrid and mesopelagic paralepidid fishes globally important for yellowfin and bigeye tunas, respectively, while vertically-migrating euphausiid crustaceans were important for albacore tuna in the Atlantic and Pacific Oceans. Diet diversity showed global and regional patterns among tuna species. In the central and western Pacific Ocean, characterized by low productivity, a high diversity of micronekton prey was detected while low prey diversity was evident in highly productive coastal waters where upwelling occurs. Spatial patterns of diet diversity were most variable in yellowfin and bigeye tunas while a latitudinal diversity gradient was observed with lower diversity in temperate regions for albacore tuna. Sea-surface temperature was a reasonable predictor of the diets of yellowfin and bigeye tunas, whereas chlorophyll-a was the best environmental predictor of albacore diet. These results suggest that the ongoing expansion of warmer, less productive waters in the world's oceans may alter foraging opportunities for tunas due to regional changes in prey abundances and compositions.

El Niño revisited: the influence of El Niño Southern Oscillation on the world's largest tuna fisheries.

Science.gov (United States)

Receveur, A.; Simon, N.; Menkes, C.; Tremblay-Boyer, L.; Senina, I.; Lehodey, P.

2016-12-01

El Niño Southern Oscillation (ENSO) drives global climate on inter-annual scales and impacts the ecosystem structure in the warm-pool and cold-tongue of the Pacific Ocean. During the El Niño phase of ENSO, the warm-pool can stretch from the western equatorial Pacific to the eastern Pacific allowing species associated with the warm-pool to correspondingly spread eastwards. Conversely, during the la Niña phase the warm-pool is pushed to the far western equatorial Pacific by the cold-tongue allowing species associated with this ecosystem to spread westwards. Consequently, ENSO dynamics are likely to be critical for understanding the ecological processes supporting fisheries in the equatorial Pacific Ocean. Surface inhabiting tuna, such as skipjack, are thought to track the convergence of the warm-pool and cold-tongue with fishing vessels tracking this tuna behavior. Given the reliance of Pacific Island economies on tuna fisheries, knowing when tunas are more likely to be present in high density in their territorial waters is beneficial for harvest control policies such as effort trading between nations. We use the SEAPODYM model to investigate the response of bigeye and skipjack tuna species to the phases of ENSO. SEAPODYM is an age structured model that integrates fisheries dependent and independent data with environmental data. We analyze the outputs of SEAPODYM using wavelets to assess the impact of environmental and biotic variables on the abundance and distribution of adult and juvenile age classes and to study time series cycle and temporal lags to ENSO. The main result for skipjack is the eastward or westward movement of the biomass pattern which is significantly lagged with the warm pool ENSO displacement. That lag ranges from 8 months for juvenile up to 18 months for adults. Such delayed response, can be traced in the model. Higher temperature in the central Pacific during El Niño leads to better recruitment which leads to lagged increase of juvenile

ESTIMATION OF YELLOWFIN TUNA PRODUCTION LANDED IN BENOA PORT WITH WEIGHT-WEIGHT, LENGTH-WEIGHT RELATIONSHIPS AND CONDITION FACTOR APPROACHES

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Irwan Jatmiko

2017-01-01

Full Text Available Yellowfin tuna (Thunnus albacares is one of the important catch for the fishing industry in Indonesia. Length-weight relationship study is one of important tools to support fisheries management. However it could not be done to yellowfin tuna landed in Benoa port since they are in the form of gilled-gutted condition. The objectives of this study are to determine the relationship between gilled-gutted weight (GW and whole weight (WW, to calculate length weight relationship between fork length (FL and estimated whole weight (WW and to assess the relative condition factor (Kn of yellowfin tuna in Eastern Indian Ocean. Data were collected from three landing sites i.e. Malang, East Java; Benoa, Bali and Kupang, East Nusa Tenggara from January 2013 to February 2014. Linear regression analysis applied to test the significance baseline between weight-weight relationships and log transformed length weight relationship. Relative condition factor (Kn used to identify fish condition among length groups and months. The results showed a significant positive linear relationships between whole weight (WW and gilled-gutted weight (GW of T. albacares (p<0.001. There was a significant positive linier relationships between log transformed fork length and log transformed whole weight of T. albacares (p<0.001. Relative condition factor (Kn showed declining pattern along with length increase and varied among months. The findings from this study provide data for management of yellowfin tuna stock and population.

JENIS, UKURAN DAN DAERAH PENANGKAPAN HIU THRESHER (FAMILI ALOPIIDAE YANG TERTANGKAP RAWAI TUNA DI SAMUDERA HINDIA

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Agustinus Anung Widodo

2016-03-01

Full Text Available Sebagai anggota Indian Ocean Tuna Commision (IOTC Indonesia wajib mengadopsi isi Resolusi IOTC 10/12 yang mengatur pengelolaan sumberdaya ikan hiu thresher (famili Alopiidae. Secara spesifik Indonesia belum melaksanakan pengelolaan sumberdaya hiu thresher karena spesies tersebut belum mendapatkan perhatian serius. Tulisan ini bermaksud menyampaikan hasil penelitian tentang ikan hiu thresher (Famili Alopiidae yang tertangkap rawai tuna di Samudera Hindia berbasis di Cilacap. Data diperoleh dari kegiatan pengambilan contoh di pelabuhan tahun 2010, kegiatan observasi di atas kapal rawai tuna bulan Januari 2010 dan laporan statistik PPS Cilacap tahun 2006-2010. Hasil kajian menunjukkan bahwa: (a di perairan Indonesia ada dua spesies dari tiga spesies hiu thresher yang ada di dunia, yaitu hiu monyet atau pelagic thresher (Alopias pelagicus Nakamura 1935 dan hiu paitan atau bigeye thresher (A. superciliosus Lowe 1840. Satu spesies lainnya yang belum pernah ditemukan adalah thinfin thresher (A.vulpinus Bonnaterre1788.  Dilihat dari teknologi rawai tuna yang digunakan, daerah sebaran hiu thresher sama dengan tuna di Samudera Hindia, sehingga sulit untuk menghindari tidak tertangkapnya hiu thresher oleh rawai tuna. Jumlah dari jenis hiu monyet yang tertangkap rawai tuna di Samudera Hindia berkisar 0,1-0,6 % dan hiu paitan berkisar 0,1-1,3 % dari total tangkapan. Ukuran hiu thresher yang tertangkap rawai tuna umumnya ikan yang telah dewasa (berkisar 54-74% dan diduga telah mengalami pemijahan. Hampir semua bagian hiu thresher dimanfaatkan sebagai bahan pangan dan farmasi. Selain dipasarkan di dalam negeri, ikan hiu thresher juga diekspor terutama siripnya ke manca negara dan terbanyak ke China.   As a member of IOTC, Indonesia is obliged to implement all IOTC’s resolutions including resolution 10/12 on the conservation of thresher sharks (Family Alopiidae caught in association with fisheries in the IOTC area of competence. Indonsia has not

Validation of the method spectrophotometer in the histamine determination in fresh tuna (Thunnus Tunna)

International Nuclear Information System (INIS)

Chacon Silva, F.

1998-01-01

The objective of this study was to validate the spectrophotometer method described by Bateman et al. (1994) for the histamine determination in fresh tuna (Thunnus Tunna) and to evaluate the histamine concentration in samples of fresh tuna. To fulfill the recently exposed objectives, the figures of merit were determined like they are it: recovery limits of detection, sensibility and repetitive of the method spectrophotometry and applied the analysis at twenty samples of fresh tuna for copy of the Metropolitan area and three sample like reference of fresh tuna stored 4 degree centigrade by 15 days. The histamine recovery you determines enriching seven ours of fresh tuna with histamine to two levels different 0.613 mg/L and 2.21 mg/L. three samples were left without enriching and you subtract the average to the native histamine. You determines the one it limits of detection using the standard deviation to three levels of concentration of histamine 1.37 mg/L, 2.22 mg/L and 3.22 mg/L, the minimum quantity of hi stamina that you can determine for the method spectrophotometry settling down. The repetitive you determines using the standard deviation for 100 among the average of the histamine values, in seven you replies independent of the same sample. You determines the histamine content, in the fresh tuna Thunnus Tunna of the expends of the Metropolitan Area and in samples of reference stored 4 degrees centigrade by 15 days [es

Evaluation of the proximate quality of the combination of Tuna (Thunnus albacares) and white oyster mushroom (Pleurotus ostreatus) nuggets

Science.gov (United States)

Yufidasari, H. S.; Prihanto, A. A.; Nurdiani, R.; Jaziri, A. A.

2018-04-01

Nugget is a processed meat product which has great market demand but need variations to increase its nutritional content. Tuna is rich in omega-3 protein, vitamins, and minerals. White oyster mushrooms have high nutritional content which are about 23-33% protein, 36-68 % carbohydrates and 12-22 % amino acids. The purpose of this research is to evaluate the chemical quality of Tuna nugget (Thunnus albacores) with combination of white oyster mushroom (Pleurotus ostreatus). Complete Randomized Design (RAL) with parameters of Tuna and white oyster mushroom formulation, TJ1 (70 % Tuna: 30 % white oyster mushroom), TJ2 (50 % Tuna: 50 % white oyster mushroom), TJ3 (30 % Tuna: 70 % white oyster mushroom), and Control or K Treatment (100 % Tuna) is used. Results of Tuna nuggets with white oyster mushroom combination showed the highest value of water content in TJ3 50.14 %, protein K 19.6 %, fat TJ3 22.98 %, ash K 3.99 % and 2.47 % crude fiber. From these results, there is a need for further research on fat, ash and coarse fiber content that is used in the manufacture of fish nuggets combined with oyster mushrooms because it failed to meet Indonesian National Standard (SNI).

Mercury in tunas and blue marlin in the North Pacific Ocean.

Science.gov (United States)

Drevnick, Paul E; Brooks, Barbara A

2017-05-01

Models and data from the North Pacific Ocean indicate that mercury concentrations in water and biota are increasing in response to (global or hemispheric) anthropogenic mercury releases. In the present study, we provide an updated record of mercury in yellowfin tuna (Thunnus albacares) caught near Hawaii that confirms an earlier conclusion that mercury concentrations in these fish are increasing at a rate similar to that observed in waters shallower than 1000 m. We also compiled and reanalyzed data from bigeye tuna (Thunnus obesus) and blue marlin (Makaira nigricans) caught near Hawaii in the 1970s and 2000s. Increases in mercury concentrations in bigeye tuna are consistent with the trend found in yellowfin tuna, in both timing and magnitude. The data available for blue marlin do not allow for a fair comparison among years, because mercury concentrations differ between sexes for this species, and sex was identified (or reported) in only 3 of 7 studies. Also, mercury concentrations in blue marlin may be insensitive to modest changes in mercury exposure, because this species appears to have the ability to detoxify mercury. The North Pacific Ocean is a region of both relatively high rates of atmospheric mercury deposition and capture fisheries production. Other data sets that allow temporal comparisons in mercury concentrations, such as pacific cod (Gadus macrocephalus) in Alaskan waters and albacore tuna (Thunnus alalunga) off the US Pacific coast, should be explored further, to aid in understanding human health and ecological risks and to develop additional baseline knowledge for assessing changes in a region expected to respond strongly to reductions in anthropogenic mercury emissions. Environ Toxicol Chem 2017;36:1365-1374. © 2017 SETAC. © 2017 SETAC.

CULTURAL MEMORY OF VICTORY OF LAS TUNAS CITY' LODGES FROM 1930 TO 1945 / MEMORIA CULTURAL DE LAS LOGIAS DE VICTORIA DE LAS TUNAS 1930-1945

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Milena Medina Pérez

2012-09-01

Full Text Available The cultural memory of the lodges of Victoria de Las Tunas (1930-1945, it constitutes the topic of the present investigation. The thematic of the lodges has been approached for studious and investigating, not alone of the town but of several parts of the world. Still when these studies exist, the related with the cultural memory of the lodges of the territory, is in the pages of the documents of the time that which leaves to the light starting from this investigation, to show yesterday's Tunas, rich in histories and anecdotes. In the town during the investigated period the lodges Masonic Children of Hiram existed, Vicente García No. 27, the young AJEF, the lodge Teosófica Esperanza, the Children of East No. 54 of the Odd Independent Fellows, the lodge Cucalambé of the Odd United Fellows and the lodge Victoria de Las Tunas No. 78 of the Luz's Order Gentlemen.

Tuna Park Shopping Centre A comparative study of marketing communication tools

OpenAIRE

Wongrattanavichit, Teewin; Wang, Haiyan

2008-01-01

Date: 2008 June 08 Course: Master thesis Authors: Haiyan Wang, Teewin Wongrattanavichit Tutor: Jan Löwstedt Title: The study of marketing communication effectiveness and customer perception of Tuna Park shopping centre Introduction: The research about the effectiveness of marketing communication tool and customer perception was studied in Tuna Park shopping center, Eskilstuna. The marketing strategy and objective was to compare with the results from the questionnaire in order to measure the e...

Evolutionary changes of multiple visual pigment genes in the complete genome of Pacific bluefin tuna.

Science.gov (United States)

Nakamura, Yoji; Mori, Kazuki; Saitoh, Kenji; Oshima, Kenshiro; Mekuchi, Miyuki; Sugaya, Takuma; Shigenobu, Yuya; Ojima, Nobuhiko; Muta, Shigeru; Fujiwara, Atushi; Yasuike, Motoshige; Oohara, Ichiro; Hirakawa, Hideki; Chowdhury, Vishwajit Sur; Kobayashi, Takanori; Nakajima, Kazuhiro; Sano, Motohiko; Wada, Tokio; Tashiro, Kosuke; Ikeo, Kazuho; Hattori, Masahira; Kuhara, Satoru; Gojobori, Takashi; Inouye, Kiyoshi

2013-07-02

Tunas are migratory fishes in offshore habitats and top predators with unique features. Despite their ecological importance and high market values, the open-ocean lifestyle of tuna, in which effective sensing systems such as color vision are required for capture of prey, has been poorly understood. To elucidate the genetic and evolutionary basis of optic adaptation of tuna, we determined the genome sequence of the Pacific bluefin tuna (Thunnus orientalis), using next-generation sequencing technology. A total of 26,433 protein-coding genes were predicted from 16,802 assembled scaffolds. From these, we identified five common fish visual pigment genes: red-sensitive (middle/long-wavelength sensitive; M/LWS), UV-sensitive (short-wavelength sensitive 1; SWS1), blue-sensitive (SWS2), rhodopsin (RH1), and green-sensitive (RH2) opsin genes. Sequence comparison revealed that tuna's RH1 gene has an amino acid substitution that causes a short-wave shift in the absorption spectrum (i.e., blue shift). Pacific bluefin tuna has at least five RH2 paralogs, the most among studied fishes; four of the proteins encoded may be tuned to blue light at the amino acid level. Moreover, phylogenetic analysis suggested that gene conversions have occurred in each of the SWS2 and RH2 loci in a short period. Thus, Pacific bluefin tuna has undergone evolutionary changes in three genes (RH1, RH2, and SWS2), which may have contributed to detecting blue-green contrast and measuring the distance to prey in the blue-pelagic ocean. These findings provide basic information on behavioral traits of predatory fish and, thereby, could help to improve the technology to culture such fish in captivity for resource management.

Precooking as a Control for Histamine Formation during the Processing of Tuna: An Industrial Process Validation.

Science.gov (United States)

Adams, Farzana; Nolte, Fred; Colton, James; De Beer, John; Weddig, Lisa

2018-02-23

An experiment to validate the precooking of tuna as a control for histamine formation was carried out at a commercial tuna factory in Fiji. Albacore tuna ( Thunnus alalunga) were brought on board long-line catcher vessels alive, immediately chilled but never frozen, and delivered to an on-shore facility within 3 to 13 days. These fish were then allowed to spoil at 25 to 30°C for 21 to 25 h to induce high levels of histamine (>50 ppm), as a simulation of "worst-case" postharvest conditions, and subsequently frozen. These spoiled fish later were thawed normally and then precooked at a commercial tuna processing facility to a target maximum core temperature of 60°C. These tuna were then held at ambient temperatures of 19 to 37°C for up to 30 h, and samples were collected every 6 h for histamine analysis. After precooking, no further histamine formation was observed for 12 to 18 h, indicating that a conservative minimum core temperature of 60°C pauses subsequent histamine formation for 12 to 18 h. Using the maximum core temperature of 60°C provided a challenge study to validate a recommended minimum core temperature of 60°C, and 12 to 18 h was sufficient to convert precooked tuna into frozen loins or canned tuna. This industrial-scale process validation study provides support at a high confidence level for the preventive histamine control associated with precooking. This study was conducted with tuna deliberately allowed to spoil to induce high concentrations of histamine and histamine-forming capacity and to fail standard organoleptic evaluations, and the critical limits for precooking were validated. Thus, these limits can be used in a hazard analysis critical control point plan in which precooking is identified as a critical control point.

Pengaruh Penggunaan Formalin terhadap Kerusakan Protein Daging Ikan Tuna (Thunus sp)

OpenAIRE

Apituley, Daniel A. N.

2012-01-01

Formaldehyde is used on handling and processing of fishery product by some fisher at some coastal region of Indonesia was one that promotes protein oxidation and modification of protein structure of fish meat which give direct impact on nutritional quality of fish primarily the amino acids. This experiment was done in vitro experiment by using model of protein preparat of red and white meat of tuna. The purpose of this research was to study the effect of formaldehyde concentration and impact ...

77 FR 24669 - Atlantic Highly Migratory Species; Public Conference Call Regarding Recreational Yellowfin Tuna...

Science.gov (United States)

2012-04-25

... collection in the U.S. recreational yellowfin tuna fishery and the relationship to international yellowfin...-XB162 Atlantic Highly Migratory Species; Public Conference Call Regarding Recreational Yellowfin Tuna... Administration (NOAA), Commerce. ACTION: Notice of public conference call. SUMMARY: In order to better inform the...

Are Consumers Willing to Pay More for Sustainable Products? A Study of Eco-Labeled Tuna Steak

Directory of Open Access Journals (Sweden)

Guzhen Zhou

2016-05-01

Full Text Available A high demand for seafood leads to overfishing, harms the long-term health of seafood stocks, and threatens environmental sustainability in oceans. Sustainability certification is one of the major sustainability movements and is known as eco-labeling. For instance, in the tuna industry, leading tuna brands have committed to protecting sea turtles by allowing the tracing of the source of their tuna “from catch to can.” This paper relies on an Internet survey on consumers from Kentucky conducted in July 2010. The survey investigates household-level tuna steak (sashimi grade consumption and examines consumer preferences for eco-labeling (“Certified Turtle Safe” (CTS in this study while mimicking individuals’ seafood procurement processes. A random parameter logit model is utilized, and willingness-to-pay measures are calculated based on model estimation results. It was found that respondents on average preferred turtle-safe-labeled tuna steak and were likely to pay more for it; however, they were less likely to purchase wild-caught species, and insignificant results were found for pre-frozen. Moreover, significant heterogeneities were found across individuals regarding tuna steak purchases. The findings indicate evidence of public support for environmental friendliness, particularly with regard to eco-labeling.

50 CFR 216.92 - Dolphin-safe requirements for tuna harvested in the ETP by large purse seine vessels.

Science.gov (United States)

2010-10-01

... 50 Wildlife and Fisheries 7 2010-10-01 2010-10-01 false Dolphin-safe requirements for tuna... MAMMALS REGULATIONS GOVERNING THE TAKING AND IMPORTING OF MARINE MAMMALS Dolphin Safe Tuna Labeling § 216.92 Dolphin-safe requirements for tuna harvested in the ETP by large purse seine vessels. (a) U.S...

Aplikasi Sistem Informasi Geografis (SIG dan Penginderaan Jauh untuk Pemetaan Daerah Penangkapan Ikan Tuna Mata Besar di Selatan Jawa dan Bali

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Kadek Bagus Padmaningrat

2017-02-01

Full Text Available Bigeye tuna is the dominant species of tuna caught in the territorial waters of the Indian Ocean and a productive tropical species which accounts for more than 10% of the total catch in the whole world. Distribution of bigeye tuna can be predicted through optimum temperature associated with the presence of bigeye tuna and distribution of chlorophyll-a is associated with the presence of small pelagic fish. The distribution of sea surface temperature and chlorophyll-a can be detected through remote sensing systems. The purpose of this study was to determine the relationship between sea surface temperature and chlorophyll-a by the number of bigeye tuna catches in the waters south of Java and Bali, and mapped the area catching bigeye tuna in the waters south of Java and Bali. The method used is a second order polynomial regression analysis to determine the effect of sea surface temperature and chlorophyll-a by the number of bigeye tuna catches as well as correlation analysis to determine the relationship of sea surface temperature and chlorophyll-a by the number of bigeye tuna catches. Sea surface temperature and chlorophyll-a is related to the number of bigeye tuna catches.  The results of the analysis showed a strong relationship between sea surface temperature and chlorophyll-a by the number of bigeye tuna catches. Bigeye tuna fishing grounds in the waters south of Java and Bali are in a position 12oS-15oS and 106°E-118°E.

HASIL TANGKAP SAMPINGAN (HTS KAPAL RAWAI TUNA DI SAMUDERA HINDIA YANG BERBASIS DI BENOA

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Bram Setyadji

2016-05-01

Full Text Available Hasil tangkap sampingan (HTS hampir terdapat pada semua jenis perikanan tangkap di Indonesia, termasuk pada perikanan rawai tuna di Samudera Hindia. Kebanyakan jenis HTS merupakan spesies yang tidak diinginkan atau jenis ikan target tapi ukurannya di bawah standar yang diinginkan (yuwana atau ikan muda dan pada kasus tertentu merupakan jenis ikan yang terancam keberadaannya (Endangered species. Penelitian ini bertujuan untuk memberikan informasi tentang komposisi hasil tangkap sampingan, laju pancing dan hubungan antara tuna dengan ikan yang berasosiasi dengannya pada area penangkapan yang sama. Pengamatan dilakukan pada bulan Maret – Juli 2010 dengan mengikuti kegiatan operasi penangkapan 2 kapal rawai tuna komersial yang berbasis di Pelabuhan Benoa. Hasil penelitian menunjukkan terdapat 18 jenis hasil tangkap sampingan yang  didominasi dari family Alepisauridae; ikan naga (Alepisaurus sp.; Gempylidae; ikan gindara (oilfish, dan Dasyatidae; pari lumpur (Dasyatis spp.. Jenis ikan lain adalah ikan paruh panjang (billfish, berbagai jenis cucut dan pari, ikan teleostei, serta penyu lekang. Kebanyakan dari hasil tangkap sampingan merupakan by-product yang mempunyai nilai ekonomis tinggi kecuali jenis ikan naga dan pari lumpur yang merupakan discard/buangan.   By-catch products are mostly available in every kind of capture fisheries in Indonesia including tuna longline fisheries in Indian Ocean. Most of these are unwanted species or juvenile target fish, sometimes endangered species. The research intended to reveal the by-catch from tuna fisheries and its relationship between tuna and its associate in the same fishing ground. Surveillance was conducted on March – July, 2010 by following two commercial tuna longliners vessel based in Port of Benoa. The result showed that there were 18 by-catch species that managed to be retrieved and indentified, family Alepisauridae; lancetfish (Alepisaurus sp.; Gempylidae; oilfish (Ruvettus pretiosus, and

Cytochrome Oxidase I (COI) sequence conservation and variation patterns in the yellowfin and longtail tunas

Digital Repository Service at National Institute of Oceanography (India)

Kunal, S.P.; GirishKumar

within and between tuna Thunnus species and its application to species identification. J Fish Biol. 58, 1646–1657. 8 Terol, J., Mascarell, R., Fernandez-Pedrosa, V., Perez-Alonso, M. (2002) Statistical validation of the identification of tuna...

Isolation of 137-Cs in tuna fish by ammonium phosphomolybdate (AMP)

International Nuclear Information System (INIS)

Yumiarti; Surtipanti, S.

1988-01-01

The isolation of 137-Cs in tuna fish (Neithunnus macroptenus) has been carried out using AMP. The energy of 137-Cs was measure using NaI(T1) detector connected to a Multi Channel Analyzer (MCA). In standard solution of 137-Cs with activity 160.74 and 80.37 pCi, the addition of 120 mg AMP and 7 hours of absorption time, caused 97% of 137-Cs in the solution was absorbed. The destruction of tuna fish was carried out using two methods namely by wet destruction with sulfuric acid, nitrit acid and hydrogen peroxid mixture and by wet destruction with hydrogen peroxide. The applications of this technique of tuna fish was carried out by spiking 137-Cs standard into the fish before being destructed. The recovery obtained from wet destruction with H2O2 was about 80%, while from destruction with acid mixtures and H2O2 was only about 47%. (authors). 3 refs, 3 tabs

CPUE TRENDS OF THE INDONESIA’S TUNA LONGLINE FISHERY: LESSONS LEARNED FROM A TRIAL OBSERVER PROGRAM

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Lilis Sadiyah

2014-06-01

Full Text Available In an effort to address a shortage of reliable CPUE information, and as a preliminary step to a broader observer program, Indonesia established a Trial Observer Program (TOP for the industrial tuna long line fishery based at Benoa Fishing Port, Bali, in mid 2005. The objectives of this paper are i to describe spatial and temporal catch and effort trends from the Indonesian Indian Ocean industrial tuna long line fishery based at Benoa Fishing Port, and ii to provide an understanding of the fishing strategies used by different companies and of the environmental conditions that may influence catch trends. The observed effort covered areas both north and south of 20°S, with a concentration within 10°-20°S; 105°-120°E which overlaps with the only known spawning grounds of southern bluefin tuna (SBT. This data set showed that SBT comprised the lowest catch proportion, relative to the other three tuna species caught, bigeye tuna (BET, yellowfin tuna (YFT and albacore (ALB. BET and ALB had been suggested as the main target species for the fishery, but this varied by region. The TOP data set suggests that different tuna fishing companies targeted different species and used different fishing practices, including differences in bait used, areas fished, start time of setting, and the number of hooks between floats (HBF. It is a priority to improve the spatial and temporal coverage of the observer program before the data can be considered to be representative of the fleet, particularly given the high degree of variability in fishing practices between companies.

The Real maccoyii: Identifying Tuna Sushi with DNA Barcodes – Contrasting Characteristic Attributes and Genetic Distances

Science.gov (United States)

Lowenstein, Jacob H.; Amato, George; Kolokotronis, Sergios-Orestis

2009-01-01

Background The use of DNA barcodes for the identification of described species is one of the least controversial and most promising applications of barcoding. There is no consensus, however, as to what constitutes an appropriate identification standard and most barcoding efforts simply attempt to pair a query sequence with reference sequences and deem identification successful if it falls within the bounds of some pre-established cutoffs using genetic distance. Since the Renaissance, however, most biological classification schemes have relied on the use of diagnostic characters to identify and place species. Methodology/Principal Findings Here we developed a cytochrome c oxidase subunit I character-based key for the identification of all tuna species of the genus Thunnus, and compared its performance with distance-based measures for identification of 68 samples of tuna sushi purchased from 31 restaurants in Manhattan (New York City) and Denver, Colorado. Both the character-based key and GenBank BLAST successfully identified 100% of the tuna samples, while the Barcode of Life Database (BOLD) as well as genetic distance thresholds, and neighbor-joining phylogenetic tree building performed poorly in terms of species identification. A piece of tuna sushi has the potential to be an endangered species, a fraud, or a health hazard. All three of these cases were uncovered in this study. Nineteen restaurant establishments were unable to clarify or misrepresented what species they sold. Five out of nine samples sold as a variant of “white tuna” were not albacore (T. alalunga), but escolar (Lepidocybium flavorunneum), a gempylid species banned for sale in Italy and Japan due to health concerns. Nineteen samples were northern bluefin tuna (T. thynnus) or the critically endangered southern bluefin tuna (T. maccoyii), though nine restaurants that sold these species did not state these species on their menus. Conclusions/Significance The Convention on International Trade

Influence of physical damage and freezing on histamine concentration and microbiological quality of yellowfin tuna during processing

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Gonzalo García-Tapia

2013-09-01

Full Text Available Yellowfin tuna has a high level of free histidine in their muscle, which can lead to histamine formation by microorganisms if temperature abuse occurs during handling and further processing. The objective of this study was to measure levels of histamine in damaged and undamaged thawed muscle to determine the effect of physical damage on the microbial count and histamine formation during the initial steps of canning processing and to isolate and identify the main histamine-forming microorganisms present in the flesh of yellowfin tuna. Total mesophilic and psicrophilic microorganisms were determined using the standard plate method. The presence of histamine-forming microorganisms was determined in a modified Niven's agar. Strains were further identified using the API 20E kit for enterobacteriaceae and Gram-negative bacilli. Physically damaged tuna did not show higher microbiological contamination than that of undamaged muscle tuna. The most active histamine-forming microorganism present in tuna flesh was Morganella morganii. Other decarboxylating microorganisms present were Enterobacter agglomerans and Enterobacter cloacae. Physical damage of tune during catching and handling did not increase the level of histamine or the amount of microorganisms present in tuna meat during frozen transportation, but they showed a higher risk of histamine-forming microorganism growth during processing.

Autolytic degradation of skipjack tuna during heating as affected by initial quality and processing conditions.

Science.gov (United States)

Stagg, Nicola J; Amato, Penny M; Giesbrecht, Francis; Lanier, Tyre C

2012-02-01

Several factors were studied as affecting protein degradation and texture of skipjack tuna muscle following ambient pressure thermal processing (precooking). These included degree of mushy tuna syndrome (MTS) evidenced in the raw meat, raw meat pH, abusive thawing/holding, and precooking temperature/time. Slurries and intact pieces from frozen skipjack tuna, either tempered for 2 h or thawed and held at 25 °C for 22 h (abusive treatment) were heated at temperatures ranging from 40 to 80 °C for up to 2 h, and also at 90 °C for 1 h, with or without prior adjustment of pH to 5 or 7 to favor cathepsin or calpain activity, respectively. Proteolysis of precooked samples was monitored by Lowry assay and SDS-PAGE; cooked texture of intact meat was measured using a Kramer shear press and by sensory profile analysis. Proteolysis maximally occurred in slurries of skipjack tuna muscle that had been abusively stored (22 h at 25 °C) and adjusted to pH 5 prior to heating at 55 °C. Intact pieces of tuna abusively thawed/held for 22 h with subsequent heating at 55 °C also evidenced the most proteolysis and were the least firm in texture. Raw fish that evidenced higher severity of MTS when raw displayed higher levels of proteolysis prior to cooking, which were further increased after cooking at 55 °C. The kinetic data presented here can be used to optimize processing conditions for skipjack tuna canning to minimize textural degradation and optimize quality. © 2012 Institute of Food Technologists®

Microbiological quality and safety of Skipjack tuna loins (Katsuwonus Pelamis intented for canning

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Francesco Casalinuovo

2018-03-01

Full Text Available Tuna is a food widely consumed fresh and canned as well. After catching and filleting, a pre-cooking step is normally followed by freezing and shipping to canning industry as loins. The aim of this paper was to assess the microbiological quality and safety of tuna loins (50 samples imported by an Italian canned tuna producer from two different FAO fishing areas. Total bacterial count (TBC, Coliforms, Enterobacteriaceae, Escherichia coli, Listeria monocytogenes, Salmonella, Staphylococcus aureus, Vibrio parahaemolyticus, Vibrio cholera, pH measurement, S. aureus enterotoxin and histamine levels were evaluated. Significant differences were evidenced for TBC, Enterobacteriaceae, E. coli, Coliforms and pH between fishing areas. Staphylococcus aureus was detected in all the samples tested at 1 to 3 Log cfu/g; Staphylococcus warneri, S. saprophyticus, S. epidermidis, S. hominis, S. intermedius, S. vitulinus and S. sciuri were also identified. Listeria monocytogenes, Salmonella, Vibrio parahaemolyticus, Vibrio cholera and Staphylococcus aureus enterotoxin were not detected. Histamine ranged between 0 to 5 mg/kg. The tuna loins analysed in this paper have to be considered safe; staphylococci presence represents a possible concern and has to been taken in account when risk analysis is carried out.

A full lifecycle bioenergetic model for bluefin tuna.

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Marko Jusup

Full Text Available We formulated a full lifecycle bioenergetic model for bluefin tuna relying on the principles of Dynamic Energy Budget theory. Traditional bioenergetic models in fish research deduce energy input and utilization from observed growth and reproduction. In contrast, our model predicts growth and reproduction from food availability and temperature in the environment. We calibrated the model to emulate physiological characteristics of Pacific bluefin tuna (Thunnus orientalis, hereafter PBT, a species which has received considerable scientific attention due to its high economic value. Computer simulations suggest that (i the main cause of different growth rates between cultivated and wild PBT is the difference in average body temperature of approximately 6.5°C, (ii a well-fed PBT individual can spawn an average number of 9 batches per spawning season, (iii food abundance experienced by wild PBT is rather constant and sufficiently high to provide energy for yearly reproductive cycle, (iv energy in reserve is exceptionally small, causing the weight-length relationship of cultivated and wild PBT to be practically indistinguishable and suggesting that these fish are poorly equipped to deal with starvation, (v accelerated growth rate of PBT larvae is connected to morphological changes prior to metamorphosis, while (vi deceleration of growth rate in the early juvenile stage is related to efficiency of internal heat production. Based on these results, we discuss a number of physiological and ecological traits of PBT, including the reasons for high Feed Conversion Ratio recorded in bluefin tuna aquaculture.

21 CFR 161.190 - Canned tuna.

Science.gov (United States)

2010-04-01

.... (a) Identity. (1) Canned tuna is the food consisting of processed flesh of fish of the species... deemed to be safe if it is not a food additive as defined in section 201(s) of the Federal Food, Drug, and Cosmetic Act (the act), or if it is a food additive as so defined, it is used in conformity with...

Tuna Species Substitution in the Spanish Commercial Chain: A Knock-On Effect.

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Ana Gordoa

Full Text Available Intentional mislabelling of seafood is a widespread problem, particularly with high-value species like tuna. In this study we examine tuna mislabelling, deliberate species substitution, types of substitution and its impact on prices. The survey covered the commercial chain, from Merca-Barna to fishmongers and restaurants in the Spanish Autonomous Community of Catalonia. To understand the geographic extent of the problem we also sampled Merca-Madrid, Europe's biggest fish market, and Merca-Málaga for its proximity to the bluefin tuna migratory route and trap fishery. Monthly surveys were carried out over one year. The results showed a high deficiency in labelling: 75% of points of sale and 83% of restaurants did not specify the species, and in those cases the name of the species had to be asked. A total of 375 samples were analysed genetically, the largest dataset gathered in Europe so far. The identified species were Thunnus albacares, Thunnus thynnus and Thunnus obesus. Species substitution began at suppliers, with 40% of observed cases, increasing to 58% at fishmongers and 62% at restaurants. The substitution was mainly on bluefin tuna (T. thynnus, 73% of cases. At restaurants, only during the bluefin fishing season, we observed a decrease of Bluefin tuna substitution and an increase of reverse substitution revealing some illegal fishing. The effect of species substitution on species prices was relevant: T. obesus increased its price by around €12 kg-1 when it was sold as bluefin. In view of the deficiency of labelling, the abuse of generic names and the lack of the bluefin catch document, we conclude that the Spanish regulations are ineffective, highlighting the need for policy execution, and the urgent need for information campaigns to Spanish consumers.

Convergent evolution in mechanical design of lamnid sharks and tunas.

Science.gov (United States)

Donley, Jeanine M; Sepulveda, Chugey A; Konstantinidis, Peter; Gemballa, Sven; Shadwick, Robert E

2004-05-06

The evolution of 'thunniform' body shapes in several different groups of vertebrates, including whales, ichthyosaurs and several species of large pelagic fishes supports the view that physical and hydromechanical demands provided important selection pressures to optimize body design for locomotion during vertebrate evolution. Recognition of morphological similarities between lamnid sharks (the most well known being the great white and the mako) and tunas has led to a general expectation that they also have converged in their functional design; however, no quantitative data exist on the mechanical performance of the locomotor system in lamnid sharks. Here we examine the swimming kinematics, in vivo muscle dynamics and functional morphology of the force-transmission system in a lamnid shark, and show that the evolutionary convergence in body shape and mechanical design between the distantly related lamnids and tunas is much more than skin deep; it extends to the depths of the myotendinous architecture and the mechanical basis for propulsive movements. We demonstrate that not only have lamnids and tunas converged to a much greater extent than previously known, but they have also developed morphological and functional adaptations in their locomotor systems that are unlike virtually all other fishes.

Screening of biodiesel production from waste tuna oil (Thunnus sp.), seaweed Kappaphycus alvarezii and Gracilaria sp.

Science.gov (United States)

Alamsjah, Mochammad Amin; Abdillah, Annur Ahadi; Mustikawati, Hutami; Atari, Suci Dwi Purnawa

2017-09-01

Biodiesel has several advantages over solar. Compared to solar, biodiesel has more eco-friendly characteristic and produces lower greenhouse gas emissions. Biodiesel that is made from animal fats can be produced from fish oil, while other alternative sources from vegetable oils are seaweed Kappaphycus alvarezii and Gracilaria sp. Waste tuna oil (Thunnus sp.) in Indonesia is commonly a side product of tuna canning industries known as tuna precook oil; on the other hand, seaweed Gracilaria sp. and Kappaphycus alvarezii are commonly found in Indonesia's seas. Seaweed waste that was used in the present study was 100 kg and in wet condition, and the waste oil was 10 liter. The seaweed was extracted with soxhletation method that used n-hexane as the solvent. To produce biodiesel, trans esterification was performed on the seaweed oil that was obtained from the soxhletation process and waste tuna oil. Biodiesel manufactured from seaweed K. alvarezii obtained the best score in flash point, freezing point, and viscosity test. However, according to level of manufacturing efficiency, biodiesel from waste tuna oil is more efficient and relatively easier compared to biodiesel from waste K. alvarezii and Gracilaria sp.

Detection of pelagic habitat hotspots for skipjack tuna in the Gulf of Bone-Flores Sea, southwestern Coral Triangle tuna, Indonesia.

Science.gov (United States)

Zainuddin, Mukti; Farhum, Aisjah; Safruddin, Safruddin; Selamat, Muhammad Banda; Sudirman, Sudirman; Nurdin, Nurjannah; Syamsuddin, Mega; Ridwan, Muhammad; Saitoh, Sei-Ichi

2017-01-01

Using remote sensing of sea surface temperature (SST), sea surface height anomaly (SSHA) and chlorophyll-a (Chl-a) together with catch data, we investigated the detection and persistence of important pelagic habitat hotspots for skipjack tuna in the Gulf of Bone-Flores Sea, Indonesia. We analyzed the data for the period between the northwest and southeast monsoon 2007-2011. A pelagic hotspot index was constructed from a model of multi-spectrum satellite-based oceanographic data in relation to skipjack fishing performance. Results showed that skipjack catch per unit efforts (CPUEs) increased significantly in areas of highest pelagic hotspot indices. The distribution and dynamics of habitat hotspots were detected by the synoptic measurements of SST, SSHA and Chl-a ranging from 29.5° to 31.5°C, from 2.5 to 12.5 cm and from 0.15 to 0.35 mg m-3, respectively. Total area of hotspots consistently peaked in May. Validation of skipjack CPUE predicted by our model against observed data from 2012 was highly significant. The key pelagic habitat corresponded with the Chl-a front, which could be related to the areas of relatively high prey abundance (enhanced feeding opportunity) for skipjack. We found that the area and persistence of the potential skipjack habitat hotspots for the 5 years were clearly identified by the 0.2 mg m-3 Chl-a isopleth, suggesting that the Chl-a front provides a key oceanographic indicator for global understanding on skipjack tuna habitat hotspots in the western tropical Pacific Ocean, especially within Coral Triangle tuna.

Can Cooperative Management of Tuna Fisheries in the Western Pacific Solve the Growth Overfishing Problem?

NARCIS (Netherlands)

Bailey, M.L.; Rashid Sumaila, U.; Martell, S.J.D.

2013-01-01

Tuna fisheries in the western and central Pacific Ocean are important globally for both food and economic security. Yellowfin and bigeye tuna stocks in this region are declining, in part due to the juvenile bycatch of these species by the purse seine fishery using floating objects and fish

77 FR 73969 - International Fisheries; Pacific Tuna Fisheries; Fishing Restrictions in the Eastern Pacific Ocean

Science.gov (United States)

2012-12-12

... overfishing of the stock. DATES: Comments must be submitted in writing by January 11, 2013. A public hearing... effort quotas are an important step for reducing the overfishing of bluefin tuna. In 2011, NMFS determined overfishing is occurring on Pacific bluefin tuna based on stock assessment results of the...

76 FR 283 - International Fisheries; Pacific Tuna Fisheries; Vessel Capacity Limit in the Purse Seine Fishery...

Science.gov (United States)

2011-01-04

... of implementing a capacity management regime, the United States chose to further limit its fleet... Inter-American Tropical Tuna Commission (IATTC) Resolution on the Capacity of the Tuna Fleet Operating.... industry consistent with the IATTC management framework. DATES: These regulations become effective on...

A full lifecycle bioenergetic model for bluefin tuna.

NARCIS (Netherlands)

Jusup, M.; Klanjscek, T.; Matsuda, H.; Kooijman, S.A.L.M.

2011-01-01

We formulated a full lifecycle bioenergetic model for bluefin tuna relying on the principles of Dynamic Energy Budget theory. Traditional bioenergetic models in fish research deduce energy input and utilization from observed growth and reproduction. In contrast, our model predicts growth and

Influences of oceanographic features on the distribution and abundance of yellowfin tuna, Thunnus albacares, larvae in the Gulf of Mexico

Science.gov (United States)

Cornic, M.; Rooker, J. R.

2016-02-01

Summer ichthyoplankton surveys were conducted in the northern Gulf of Mexico (NGoM) from 2007-2010 to characterize patterns of distribution and abundance of yellowfin tuna (Thunnus albacares) larvae in this region. Yellowfin tuna larvae were moderately abundant representing 9% of the overall Thunnus larvae collected (18765) and had a percent occurrence ranging from 13 to 57% among surveys. Interannual variations were detected with highest mean densities observed in 2009 (2.2 larvae per 1000m3) and the lowest mean densities observed in 2008 (0.7 larvae per 1000 m3). Generalized additive models were used to investigate the influence of oceanographic conditions on abundance of yellowfin tuna larvae. Increased densities were associated with high sea surface temperatures, positive sea surface heights, and intermediate salinities, revealing that these physicochemical conditions may be favorable for yellowfin tuna larvae. These results indicate that the NGoM is an important spawning and/or nursery habitat for yellowfin tuna and suggest that mesoscale features and physicochemical characteristics of water masses may impact distribution and abundance of yellowfin tuna larvae in the NGoM.

Characterization of Fish Skin Gelatin Yellowfin Tuna

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Mala Nurilmala

2017-08-01

Full Text Available Gelatin is one of the products which become a necessity for various industries, i.e. food and non-food industries. The application of gelatin has been increasing year by year in Indonesia. However, there is nogelatin industry in Indonesia so far. Thus, it is necessary to find an alternative source of gelatin, especially from fishery by products.Thus, the purpose of this research was to extract fish skin gelatin of yellowfin tuna with temperature treatments (55, 65 and 75oC. In addition, the properties of resulted gelatin were determined including yield, pH, gel strength, viscosity, functional groups, molecular weight profiles, and amino acid composition. The extraction at 75oC was chosen as the best result. The yield was 17%; pH 5.3; gel strength 1789.55 gf, viscosity 104.2 Cp, respectively. There was functional group amide A, I, II, dan III. SDS-PAGE showed β, α1 dan α2 bands for tuna skin gelatin. In addition, the main amino acids were glycine and proline.

Spatially explicit estimates of stock sizes, structure and biomass of herring and blue whiting, and catch data of bluefin tuna

DEFF Research Database (Denmark)

Huse, G.; MacKenzie, B. R.; Trenkel, V.

2015-01-01

The North Atlantic is a productive marine region which has supported important commercial fisheries for centuries. Many of these fisheries have exploited the pelagic species, including herring, blue whiting and tuna. Here we present data on the distribution of herring and blue whiting based on th...

Utilization of tuna roe and using inulin as oil replacer for producing value added omega-3 mayonnaise product

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Kanrawee Hunsakul

2016-03-01

Full Text Available Background: The fishery industry has been important for Thailand’s economy for more than 30 years. For example, Thailand isthe world’s largest canned tuna producer and exporter. However, onlyordinary meat or white meatis usedfor raw materialin canned tuna products. Whileroe, viscera, head and dark meataresold at cheap prices,with theseby-products being usedto feed plant or local human food,its nutritive values withfat,protein and minerals arestill high. It is well known that tuna is a good source of polyunsaturated fatty acid (PUFA, including Eicosapentaenoicacid (EPA and Docosahexanoic acid (DHA.People around the world pay more attention to eatingsaladsconsisting of fruits and vegetables, in addition todressing. Generally, mayonnaise, a kind of salad dressing, consists of chicken egg yolk(12-15% and soybean oil (30-65%. Both of these ingredients contain very high saturated fatty acid contents. Therefore, because normal mayonnaise is high in fat content and low in polyunsaturated fatty acid, this product is not ideal for people on a diet or those who are trying to control their weight. Objective: To increase omega-3 through tuna roe substitution and to replace fat content using inulin gel. Methods: Tuna roe was prepared by soaking in galangalsolutionextracted with 95% ethanol for removal fishy/rancidity odor. Inulin powder 45 g was suspended in 55 ml of water before being brought to heat at temperature 80oC for 30min to form a gel and stored at 4oC. Treatment ofmakingomega-3 mayonnaise product was started using 100% tuna roe substitution for egg yolk. Thereafter, inulin gel was added to replace vegetable oil at 0, 25, 50, 75 and 100%. Basic mayonnaise containing egg yolk and 0% inulin gel (100% soy bean oil was used asthecontrol sample. Color and emulsion stability testswere monitored for physical quality. pH value, peroxide value (PV and thiobarbituric acid reactive substances (TBARS were used for chemical qualityanalyses. Total viable

Leaching of Oil from Tuna Fish Liver by Using Solvent of Methyl-Ethyl Ketone

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Mirna Rahmah Lubis

2013-12-01

Full Text Available Research of oil leaching from Tuna Fish Liver has been carried out by extracting of tuna fish liver in soxhlet by using methyl-ethyl ketone as solvent. Liver of fresh tuna fish is blended, put into soxhlet, and extracted at temperatures of 60oC, 65oC, 70oC, 75oC, and 80oC. After obtaining the oil, separation between solvent and oil is carried out by distillation. Oil obtained is analyzed by testing the yield, acid number, Iodine value, viscosity, and its impurities content. Yield obtained is influenced by temperature and time of leaching. Both variables indicates that the higher the variables, the more fish liver oil obtained. Maximum yield obtained is 25.552% at operating condition of leaching temperature 80oC, and leaching duration of 5 hours.

Optimization of Processing Conditions of Traditional Cured Tuna Loins–Muxama

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Eduardo Esteves

2018-01-01

Full Text Available Muxama is a traditional highly-valued food product prepared from dry-cured tuna loins in southern Portugal and Spain. The production procedure has seen little change over the last centuries. The muxama’s stability is due to reduced water activity. In addition, the drying method has secondary effects on characteristics of flavor, color, and the nutritional value of the product. Our objectives were to describe the dynamics of important physicochemical parameters such as moisture content, water activity (aW, NaCl concentration (as water–phase salt, ZNaCl, pH and color, during the salting and drying stages of muxama production, and to test the effect(s of changes in the traditional processing conditions followed in southern Portugal, aiming at optimizing the production procedure. The lowest values of moisture and aW and highest ZNaCl obtained after drying tuna loins for seven days at 20 °C exceeded the values reported for commercial products and have impact on the appearance (color of the product. Therefore, drying tuna loins at lower temperatures (ca. 14 °C is probably more appropriate. The results obtained in this study could be used in the design of future experiments at other conditions and to assess other quality parameters, e.g., total volatile base nitrogen (TVB-N, thiobarbituric acid reactive substances (TBA-RS, microorganism abundance and sensory attributes, and subsequent validation trials.

Reducing the Bitterness of Tuna (Euthynnus pelamis Dark Meat with Lactobacillus casei subsp. casei ATCC 393

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Ernani S. Sant’Anna

2004-01-01

Full Text Available During the process of canning tuna fish, considerable amounts of dark tuna meat are left over because of its bitterness, which are then used in the production of animal food. Fermentation with Lactobacillus casei subsp. casei ATCC 393 was used as an alternative to reduce this bitter taste. Samples of meat were prepared, vacuum packed and then stored at –18 °C. The frozen dark meat was used immediately after defrosting and the experiment was carried out with 2 and 4 % of NaCl with the addition of 2 and 4 % of glucose, respectively. The dark tuna meat was inoculated with lactic acid bacteria (LAB and fermented at 10 °C for 30 days. The fermentation process was monitored through bacteriological and chemical analyses, when an increase of acidity and the corresponding decrease of pH were observed due to the prevalence of LAB. Sensorial analysis, using a test of multiple comparison, was carried out with pastes of fermented dark tuna meat and presented a significant difference when compared to the paste control, indicating the reduction of bitter taste.

Tuna Cannery Points, Tutuila AS, 2007, US EPA Region 9

Data.gov (United States)

U.S. Environmental Protection Agency — American Samoa's primary industry is tuna processing by the Samoa Packing Co., user of the "Chicken of the Sea" label, and StarKist Samoa. Canneries thrive in this...

An evaluation of management strategies for Atlantic tuna stocks

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L. T. Kell

2003-04-01

Full Text Available International agreements for the International Commission for the Conservation of Atlantic Tunas (ICCAT convention area imply that Atlantic tuna stocks should be managed by strategies based on maximum sustainable yield (MSY; however, there is concern whether this will actually ensure sustainability with sufficiently high probability consistent with the principals of the precautionary approach. Therefore, the performance of MSY management strategies based on current assessment procedures was evaluated using a computer simulation framework. The framework includes the data collection, assessment, prediction, and management processes, as well as the implementation of management regulations. It therefore provides an integrated way to evaluate the relative importance of and the interactions between each component of the system with regard to the overall success of the management strategy. The study elucidates guidelines about assessment and management that are general enough to be applied to all tunas in the Atlantic Ocean. It does so by comparing different hypotheses about management and assessment for three stocks (North Atlantic albacore, Atlantic bigeye and East Atlantic skipjack, which are representative of the variety encountered (i.e. from data rich to poor and tropical to temperate waters in ICCAT stocks. Management performance was especially sensitive to the carrying capacity of the stock. The type of proxy used for MSY was more important to the success of the procedure than the frequency of assessment or the number of indices used in the assessment. Whilst the procedure was successful at achieving the management objectives for albacore, it was only partially successful for bigeye and was too conservative for skipjack.

Quantitative analysis on dose to humans as a result of consuming tuna fish contaminated by cesium radionuclides

International Nuclear Information System (INIS)

Khani, J.; Donev, J.M.K.C.

2014-01-01

Quantitative empirical data is presented on the dose exposure to North Americans consuming tuna fish that have accumulated concentrations of radioactive isotopes. The two particular radioactive isotopes of interest are cesium-137 and cesium-134. Though biological effects of radiation are a widely debatable topic, the consumption of tuna fish does not support significant increased risk of cancer to humans. An important comparison is made between the elevated levels of radioactive cesium concentrations to naturally occurring radionuclides, namely potassium-40 and polonium-210. It is calculated that naturally occurring radioactive isotopes are in the orders of magnitude greater than the cesium radionuclides in tuna fish. (author)

Quantitative analysis on dose to humans as a result of consuming tuna fish contaminated by cesium radionuclides

Energy Technology Data Exchange (ETDEWEB)

Khani, J.; Donev, J.M.K.C., E-mail: jykhani@ucalgary.ca, E-mail: jason.donev@ucalgary.ca [Univ. of Calgary, Calgary, AB (Canada)

2014-07-01

Quantitative empirical data is presented on the dose exposure to North Americans consuming tuna fish that have accumulated concentrations of radioactive isotopes. The two particular radioactive isotopes of interest are cesium-137 and cesium-134. Though biological effects of radiation are a widely debatable topic, the consumption of tuna fish does not support significant increased risk of cancer to humans. An important comparison is made between the elevated levels of radioactive cesium concentrations to naturally occurring radionuclides, namely potassium-40 and polonium-210. It is calculated that naturally occurring radioactive isotopes are in the orders of magnitude greater than the cesium radionuclides in tuna fish. (author)

SWFSC/MMTD/ETP: Dolphin-Tuna Tracking Studies (DTTS) 1992-1993

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This research was designed to better understand the nature of the dolphin-tuna bond in the eastern tropical Pacific Ocean. In this study, researchers attempted to...

POPULATION STRUCTURES OF FOUR TREE SPECIES IN LOGGED-OVER TROPICAL FOREST IN SOUTH PAPUA, INDONESIA: AN INTEGRAL PROJECTION MODEL APPROACH

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Relawan kuswandi

2015-12-01

Full Text Available Selective logging has been taking place in Papua for several decades. In contrast, very little is known about the stand structure in post-logged forest. Hence, this paper investigates stand structures in logged-over area of tropical forest in South Papua. Four species were selected in three one-hectare permanent sample plots (PSPs: Vatica rassak, Syzygium sp, Litsea timoriana and Canarium asperum. PSPs were located in the forest concession area of PT. Tunas Sawaerma in Assiki, Boven Digul, in South Papua. Data sets comprised measurements made in 2005 and 2012 consisting of species, diameter at breast height (DBH, mortality and number of tree of each species. Integral Projection Models (IPMs were developed, taking into account mortality, growth, recruitment and fecundity. Results show the pattern of stand structures of the four species were more or less similar, i.e. more individual trees were present in the small diameter classes than in the larger diameter classes. The general pattern of the individual distribution of the four species is the typical reverse-J shape. Syzygium sp. has a greater number of individuals in the small diameter classes than the other three species. Population growth rates (λ are above one, indicating that the stand structures of the population dynamics of the four species are recuperating. Conclusively, these results suggest that species composition and population structure in these logged-over forests are recovering increasingly.

Genetic stock structure of frigate tuna (Auxis thazard) along Indian coast based on PCR-RFLP analyses of mtDNA D-Loop region

Digital Repository Service at National Institute of Oceanography (India)

GirishKumar; Kunal, S.P.; Menezes, M.R.

: 547-572. Pillai, N.G.K. and Mallia, J.V. 2007. Bibliography on Tunas. CMFRI Special Publication No. 92: 325 pp Pillai, P.P. and Gopakumar, G. 2003. In: M. Mohan Joseph, A.A. Jayaprakash, (Eds.), Status of exploited marine fishery resources...

[Association of the abundance and vertical distribution of tuna and beakfish in the southeast of the Caribbean sea].

Science.gov (United States)

Eslava, Nora; González, Leo W; Gaertner, Daniel

2003-03-01

The longline hooks suspension depth was estimated using the Mechanic Imitation of Flexible Systems method. The vertical distribution of tunas and billfish was determined by the relative abundance index, obtained from the catch by 11 to 25 m -long longline vessels, -based at Cumaná, Venezuela, South-eastern Caribbean Sea in depths of 65 to 142 m. The CPUE was evaluated per species, according to depth. High values were found for most of the captured species in the layer from 105 to 125 m. Yellowfin tuna (Thunnus albacares) showed the highest yield (3.37 fish/100 hooks) and blue marlin (Makaira nigricans) the lowest (0.04 fish/100 hooks). However, the statistical comparison did not allow to reject the hypothesis of lack of depth efect (Kruskal-Wallis p > .05), and demonstrated a homogeneous distribution of yellowfin tuna (Thunnus albacares), albacore (Thunnus alalunga), bigeye tuna (Thunnus obesus), sailfish (Istiophorus albicans), white marlin (Tetrapturus albidus) and blue marlin (Makaira nigricans) in the water column. The conclusion is that fish concentration in the Southern border of the Caribbean Sea is possibly due to several hydroclimatic factors--which affect tuna and billfish catching--such as water temperature and dissolved oxygen concentration which limit the distribution according to depth.

Effect of electron irradiation and bayberry polyphenols on the quality change of yellowfin tuna fillets during refrigerated storage

International Nuclear Information System (INIS)

Bu, Tingting; Jin, Yang; Li, Xiaohui; Zhang, Jinjie; Xu, Dalun; Yang, Wenge; Lou, Qiaoming

2017-01-01

This study evaluated the synergistic effect of bayberry polyphenols and electron irradiation in controlling the chemical, microbiological and sensory changes of raw yellowfin tuna fillets at 4 °C for 7 days. The results indicated that the initial values of each index were dose-dependent. The dose of 5 kGy notably accelerated adenosine triphosphate degradation and lipid oxidation, while the doses of 1 and 3 kGy had acceptable sensory quality and yielded a shelf-life of 5 days. The addition of bayberry polyphenols had evident effect in inhibiting freshness breakdown, bacteria growth, histamine formation, and discoloration of tuna fillets. Bayberry polyphenols, as an antioxidant, could inhibit lipid oxidation and sensory side-effects made by irradiation up to 3 kGy. The dose of 1–3 kGy coupled with bayberry polyphenols was optimum to preserve tuna fillets which prolonged the shelf-life to 7 days. - Highlights: • Electron irradiation inhibited bacteria growth and histamine formation. • Electron irradiation increased the red color of tuna fillets. • 5 kGy irradiation decreased the sensory quality of raw tuna fillets. • Bayberry polyphenols combined with irradiation could retard the quality change. • Bayberry polyphenols could be used as natural antioxidant and color fixative.

Food-web inferences of stable isotope spatial patterns in copepods and yellowfin tuna in the pelagic eastern Pacific Ocean

Science.gov (United States)

Olson, Robert J.; Popp, Brian N.; Graham, Brittany S.; López-Ibarra, Gladis A.; Galván-Magaña, Felipe; Lennert-Cody, Cleridy E.; Bocanegra-Castillo, Noemi; Wallsgrove, Natalie J.; Gier, Elizabeth; Alatorre-Ramírez, Vanessa; Ballance, Lisa T.; Fry, Brian

2010-07-01

Evaluating the impacts of climate and fishing on oceanic ecosystems requires an improved understanding of the trophodynamics of pelagic food webs. Our approach was to examine broad-scale spatial relationships among the stable N isotope values of copepods and yellowfin tuna ( Thunnus albacares), and to quantify yellowfin tuna trophic status in the food web based on stable-isotope and stomach-contents analyses. Using a generalized additive model fitted to abundance-weighted-average δ 15N values of several omnivorous copepod species, we examined isotopic spatial relationships among yellowfin tuna and copepods. We found a broad-scale, uniform gradient in δ 15N values of copepods increasing from south to north in a region encompassing the eastern Pacific warm pool and parts of several current systems. Over the same region, a similar trend was observed for the δ 15N values in the white muscle of yellowfin tuna caught by the purse-seine fishery, implying limited movement behavior. Assuming the omnivorous copepods represent a proxy for the δ 15N values at the base of the food web, the isotopic difference between these two taxa, “ ΔYFT-COP,” was interpreted as a trophic-position offset. Yellowfin tuna trophic-position estimates based on their bulk δ 15N values were not significantly different than independent estimates based on stomach contents, but are sensitive to errors in the trophic enrichment factor and the trophic position of copepods. An apparent inshore-offshore, east to west gradient in yellowfin tuna trophic position was corroborated using compound-specific isotope analysis of amino acids conducted on a subset of samples. The gradient was not explained by the distribution of yellowfin tuna of different sizes, by seasonal variability at the base of the food web, or by known ambit distances (i.e. movements). Yellowfin tuna stomach contents did not show a regular inshore-offshore gradient in trophic position during 2003-2005, but the trophic

Production of aspartic peptidases by Aspergillus spp. using tuna ...

African Journals Online (AJOL)

The production of extracellular aspartic peptidase by the fungi Aspergillus niger and Aspergillus awamori was carried out in a shake flask and in stirred tank submerged fermentations using tuna cooked wastewater, an industrial effluent, as nitrogen source for culture medium. In stirred tank fermentation, biomass production ...

THE SEASONAL VARIABILITY OF CPUE AND CATCH-AT-SIZE DISTRIBUTION OF TROLL AND HANDLINE TUNA FISHERIES LANDED IN LABUHAN LOMBOK

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Bram Setyadji

2016-12-01

Full Text Available Troll and hand line tuna fisheries is one of the major fishing gears landed in Labuhan Lombok coastal fishing port (PPP Labuhan Lombok west Nusa Tenggara Barat province.  Both fisheries are strongly associated with fish aggregating devices (FAD’s. The main fishing ground is Indian Ocean southern part of this province.  Several source of data has been collected regularly. Data analysis comprised of monthlycatch and effort data samples based onport monitoring program during 2012 to 2015. The result showed the diclining of CPUE of yellow fin and skipjack tuna presumably related to fishing intensity of fleets and its variability that landed in PPP Labuhan Lombok.  The increasing CPUE of skipjack tuna in 2014 was predicted due to increasing aggregation around the FADs. Constrasting seasonal fishing index pattern between yellowfin and skipjack tuna foundin 4-month cycles, started in January.A length-weight relationship suggested that yellowfin tuna caught bysmall-scale fisheries were performing allometric growth pattern (b=2.963, r2=0.9737.

Prediction of Potential Fishing Zones for Skipjack Tuna During the Northwest Monsoon Using Remotely Sensed Satellite Data

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Mukti Zainuddin

2017-06-01

Full Text Available One of economically important fish in the Bay of Bone is Skipjack tuna which their distribution and migration are influenced by surrounding environment.  This study aims to investigate the relationship between skipjack tuna and their environments, and to predict potential fishing zones (PFZs for the fish in the Bone Bay-Flores Sea using satellite-based oceanography and catch data. Generalized additive models (GAMs were used to assess the relationship. A generalized linear model(GLM constructed from GAMs was used for prediction. Monthly mean sea surface temperature (SST and chlorophyll-a during the northwest monsoon (December-January together with catch data were used for the year 2012-2013. We used the GAMs to assess the effect of the environment variables on skipjack tuna CPUE (catch per unit effort. The best GLM was selected to predict skipjack tuna abundance.  Results indicated that the highest CPUEs (fish/trip occurred in areas where SST and chlorophyll-a ranged from 29.5°-31.5°C and 0.15 - 0.25 mg m-3, respectively. The PFZs for skipjack were closely related to the spatial distribution of the optimum oceanographic conditions and these mainly developed in three locations, northern area of Bone Bay in December, in the middle area of the bay (4°-5.5°S and 120.5°-121.5°E during January and moved to the Flores Sea in February. The movement of skipjack concentration was consistent with the fishery data.  This suggests that the dynamics of the optimum oceanographic signatures provided a good indicator for predicting feeding grounds as hotspot areas for skipjack tuna in Bone Bay-Flores Sea during northwest monsoon.   Keywords:  skipjack tuna, potential fishing zones, satellite based-oceanographic data, Northwest monsoon

Levels of dioxin (PCDD/F) and PCBs in a random sample of Australian aquaculture-produced Southern Bluefin Tuna (Thunnus maccoyii)

Energy Technology Data Exchange (ETDEWEB)

Padula, D.; Madigan, T.; Kiermeier, A.; Daughtry, B.; Pointon, A. [South Australian Research and Development Inst. (Australia)

2004-09-15

To date there has been no published information available on the levels of dioxin (PCDD/F) and PCBs in Australian aquaculture-produced Southern Bluefin Tuna (Thunnus maccoyii). Southern Bluefin Tuna are commercially farmed off the coast of Port Lincoln in the state of South Australia, Australia. This paper reports the levels of dioxin (PCDD/F) and PCBs in muscle tissue samples from 11 randomly sampled aquaculture-produced Southern Bluefin Tuna collected in 2003. Little published data exists on the levels of dioxin (PCDD/F) and PCBs in Australian aquacultureproduced seafood. Wild tuna are first caught in the Great Australian Bight in South Australian waters, and are then brought back to Port Lincoln where they are ranched in sea-cages before being harvested and exported to Japan. The aim of the study was to identify pathways whereby contaminants such as dioxin (PCDD/F) and PCBs may enter the aquaculture production system. This involved undertaking a through chain analysis of the levels of dioxin (PCDD/F) and PCBs in wild caught tuna, seafloor sediment samples from the marine environment, levels in feeds and final harvested exported product. Detailed study was also undertaken on the variation of dioxin (PCDD/F) and PCBs across individual tuna carcases. This paper addresses the levels found in final harvested product. Details on levels found in other studies will be published elsewhere shortly.

Canned bluefin tuna, an in vitro cardioprotective functional food potentially safer than commercial fish oil based pharmaceutical formulations.

Science.gov (United States)

Tenore, Gian Carlo; Calabrese, Giorgio; Ritieni, Alberto; Campiglia, Pietro; Giannetti, Daniela; Novellino, Ettore

2014-09-01

Commercial canned fish species typical in the Italian market were evaluated for their lipid profile. Bluefin tuna samples showed the highest content in omega-3 fatty acids (n-3 PUFA) among the canned fish samples analyzed. Tests on H9C2 cardiomyocytes revealed that bluefin tuna n-3 PUFA may responsible for a significant cell protection against both physiological and doxorubicin-induced oxidative stress. Analogous tests performed by incubating cardiac cells with n-3 PUFA ethyl esters, of which most of fish oil pharmaceutical formulations (FOPF) are based, showed cytotoxicity at high doses. Our results highlighted that n-3 PUFA contents in a 50 g canned bluefin tuna portion would be almost equivalent to and potentially safer than those of 1 FOPF capsule (1000 mg)/die usually suggested for hyperlipidaemic subjects. Thus, Italian commercial canned bluefin tuna could be indicated as a functional food with potential health benefits for the prevention and care of cardiovascular disorders. Copyright © 2014 Elsevier Ltd. All rights reserved.

[Fatty acid variation in yellowfin tuna, spotted weakfish and Florida pompano when submitted to six cooking techniques].

Science.gov (United States)

Castro-González, María Isabel; Maafs-Rodríguez, Ana Gabriela; Romo Pérez-Gil, Fernando

2013-03-01

The aim of the present study was to analyze the effect of six cooking techniques (steamed, foiled, foiled with banana leaf, baked, microwave-cooked and light frying) in the fatty acid content of Thunnus albacore (yellowfin tuna), Cynoscionnebulosus (spotted weakfish) and Trachinotuscarolinus (Florida pompano). After cooking the fish fillets, fatty acid analyses were performed using gas chromatography. Total lipids increased in all cooking techniques in tunaand spotted weakfish. Saturated fatty acids of tuna and spotted weakfish increased in three cooking techniques, while in Florida pompano only gas oven raised their content. Lightly frying generated the highest content of n-3 in tuna and spotted weakfish, and the lowest in Florida pompano, specie that presented less variation. In tuna fish, the most recommended cooking techniques are foiled with aluminum and microwave oven; for spotted weakfish, foiled with banana leaf; while Florida pompano can be prepared using all cooking methods except gas oven. This information is useful to enrich data from chemical composition tables, in which concentrations are usually presented in raw food.

Gamma Irradiation Effects On Thiamin And Riboflavin On Fresh Tuna (Thunnus thynnus) And Salmon (Onchorhynchus gorbuscha)

International Nuclear Information System (INIS)

Tanhindarto, Rindy P.; Fox, J.B.; Lakritz, L.; Thayer, D.W.

2002-01-01

An experiment have been conducted on the effect of gamma irradiation on thiamine and riboflavin in fresh tuna and salmon. Samples were irradiated at (20 ± 0,5) oC by gamma rays with doses of 0; 2,5 and 5 kGy. The purpose of the present experiment was to study on changes of thiamine and riboflavin contents on extraction of fresh tuna and salmon after and before irradiation. The results showed that irradiation up to 2,5 kGy changed the thiamine and riboflavin contents on fresh tuna as well as their destruction which was significantly increasing caused by irradiated treatment with the dose of 5 kGy. The fresh salmon did not significantly change of the thiamine and riboflavin contents treated by irradiation up to 5 kGy

PENGARUH PERENDAMAN TULANG IKAN TUNA (Thunnus albacares DALAM LARUTAN NaOH TERHADAP KUALITAS GELATIN HASIL OLAHANNYA

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Tazwir Tazwir

2009-06-01

Full Text Available Gelatin tulang ikan tuna (Thunnus albaceres dengan kualitas baik seringkali sulit diperoleh, karena kebanyakan produk ini mengandung lemak dan protein non kolagen yang cukup tinggi. Dalam memproduksi gelatin tulang tuna, lemak, dan protein non kolagen tersebut harus direduksi hingga batas minimum. Dalam penelitian ini dipelajari pengaruh perendaman tulang ikan tuna dalam larutan NaOH sebelum ekstraksi terhadap kualitas gelatin yang dihasilkan. Tahapan yang dilakukan adalah degreasing, pencucian, perendaman dalam NaOH dengan variasi konsentrasi 0; 0,4; dan 0,8%, kemudian perendaman dalam HCl, ekstraksi, filtrasi, evaporasi, dan pengeringan. Hasil penelitian menunjukkan bahwa karakteristik gelatin yang terbaik diperoleh dari perendaman tulang dalam NaOH 0,4%, yaitu dengan nilai rendemen 8,37%; viskositas 3,27-3,37 cPs; pH 5,03; dan kekuatan gel 157,8 g Bloom gel strength.

Bluefin tuna fishing and ranching: a difficult management problem

NARCIS (Netherlands)

Stefano, de V.; Heijden, van der P.G.M.

2007-01-01

The fish processing industry and consumers in Japan are willing to pay high (and sometimes outrageous) prices for fresh bluefin tuna with fat content and flesh colour just right to be served raw as sashimi or sushi. This willingness was and still is the economic incentive for a high fishing pressure

Efecto del proceso de esterilización en conservas de atún al natural | Effect of the sterilization process canned tuna in water

Directory of Open Access Journals (Sweden)

Enrique Pino Hernández

2017-11-01

Full Text Available The goal of this study was to evaluate the effect of the sterilization process in natural canned tuna (Katsuwonus pelamis. Three treatments were carried out: A1: precooked tuna at 110°C x 110 min, A2: tuna sterilized at 117.77°C x 55 min and A3: tuna sterilized at 117.77°C x 70 min. The canned tuna samples were analyzed microbiologically, the parameters pH, color, texture, in addition to the proximal composition were determined and a sensory difference test was performed paired with a trained panel. All results were compared through ANOVA and Duncan test. The results of the microbiological tests show that there were no risks to the health of consumers. pH had a significant difference between the treatments studied. The color of the tuna tablet presented significant differences in L* and a* coordinates, resulting in A2 with a tendency towards light reds. As for b*, there were no significant differences. The treatments had no significant difference in texture (TPA. The moisture content and proteins had a significant difference, due to the thermal process, but not for fats, ashes and total carbohydrates. There were no significant differences in the sensory test. The A2 treatment is proposed as a production alternative because it minimizes the adverse effects on the characteristics evaluated in canned tuna.

The concentration and variability of selenium and mercury measured in vacuum-packed tuna fish

International Nuclear Information System (INIS)

Brockman, J.D.; Sharp, N.; Ngwenyama, R.A.; Shelnutt, L.D.; McElroy, J.A.

2009-01-01

Methylmercury (meHg) is a known toxin commonly found in fish. Fish is also a rich source of the trace nutrient selenium which has been hypothesized to modify the toxicity of meHg. We analyzed 28 samples of commercially packaged albacore and light tuna fish for selenium and mercury using standard comparator instrumental neutron activation analysis. Significant differences in the concentration of mercury and selenium were associated with the type of fish, brand and batch. Fish consumers should vary the brand of tuna fish to avoid routine consumption of a brand high in mercury. (author)

Thermal characterisation of gelatin extracted from yellowfin tuna skin and commercial mammalian gelatin.

Science.gov (United States)

Rahman, Mohammad Shafiur; Al-Saidi, Ghalib Said; Guizani, Nejib

2008-05-15

Glass transition and other thermal characteristics of gelatin from different sources were studied by differential scanning calorimetry (DSC) and modulated DSC (MDSC). The initial glass transition temperatures of equilibrated gelatin samples at 11.3% relative humidity, determined from reversible heat flow thermogram of MDSC, were 23, 75 and 59°C, respectively, for tuna skin, bovine and porcine gelatin. When gelatin samples were equilibrated at higher relative humidity of 52.9%, glass transition temperature of fish skin and bovine gelatin decreased to -3 and 57°C, respectively. Further increase of equilibration relative humidity to 75.3% showed increased value in the case of tuna skin, whereas bovine and porcine did not show any significant change. DSC and MDSC results indicated that tuna gelatin showed lower glass transition compared to mammalian source gelatin equilibrated at the same constant relative humidity. In general glass transition measured by DSC was found lower than the values measured by MDSC. The results in this study showed that the degree of plasticization varied with the source of gelatin as well as their extraction methods. Copyright © 2007 Elsevier Ltd. All rights reserved.

KAPASITAS PENANGKAPAN PANCING ULUR TUNA DI KEPULAUAN BANDA NEIRA

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Baihaqi Baihaqi

2016-04-01

Fishing capacity is an approach to fishery management relating to restrictions on fishing effort capacity. The effort capacity is determined by several variables such as vessel  and engine sizes, the size of the nets, and fishing tool technology. Study of fishing capacity based fisheries management is an alternative approach to control the input factors that are not efficiently used in fishing effort. Through the research capacity, it is expected to know the level of technical efficiency of fishing tuna fishing fleet in the Banda Sea. Fishing capacity was examined using analysis technique Data Envelopment Analysis (DEA using a linear programming. The results show that the tuna line fisheries in the Banda Neira with single output approach (catch weight, was generally at the level of efficiency that is far under from the optimal level with the current input has exceeded the optimal capacity. To achieve the production potential of the third fishing grounds, reductions of the capacity of 33%, 42% and 45% for Hatta Island, Manukang Island and Rhum Island, respectively should be done.

75 FR 33531 - Atlantic Highly Migratory Species; Atlantic Bluefin Tuna Fisheries

Science.gov (United States)

2010-06-14

... DEPARTMENT OF COMMERCE National Oceanic and Atmospheric Administration 50 CFR Part 635 RIN 0648-XW79 Atlantic Highly Migratory Species; Atlantic Bluefin Tuna Fisheries AGENCY: National Marine..., recent Large Pelagics Survey estimates indicate that charter/headboat BFT landings constitute...

Effects of the North Atlantic Oscillation on Spanish catches of albacore, Thunnus alalunga, and yellowfin tuna, Thunnus albacares, in the North–east Atlantic Ocean

Energy Technology Data Exchange (ETDEWEB)

Rubio, C.J.; MacIas, D.; Camiñas, J.A.; Fernandez, I.L.; Baez, J.C.

2016-07-01

Tuna are highly migratory pelagic species (HMPS) with great importance in commercial fishing. Several authors have highlighted the effect of climatic oscillations such as the NAO (North Atlantic Oscillation) on HMPS. This paper analyzes the effects of the NAO on two HMPS: albacore, Thunnus alalunga, and yellowfin tuna, Thunnus albacares. Fishing data from the Spanish fleet operating in the North Atlantic area were obtained from the International Commission for the Conservation of Atlantic Tunas (ICCAT) database. The results show a positive correlation between the NAO index and the Catch per Unit Effort (CPUE) for both albacore and yellowfin tuna, depicting a potential effect on their capturability. (Author)

Proteomic analysis of processing by-products from canned and fresh tuna: identification of potentially functional food proteins.

Science.gov (United States)

Sanmartín, Esther; Arboleya, Juan Carlos; Iloro, Ibon; Escuredo, Kepa; Elortza, Felix; Moreno, F Javier

2012-09-15

Proteomic approaches have been used to identify the main proteins present in processing by-products generated by the canning tuna-industry, as well as in by-products derived from filleting of skeletal red muscle of fresh tuna. Following fractionation by using an ammonium sulphate precipitation method, three proteins (tropomyosin, haemoglobin and the stress-shock protein ubiquitin) were identified in the highly heterogeneous and heat-treated material discarded by the canning-industry. Additionally, this fractionation method was successful to obtain tropomyosin of high purity from the heterogeneous starting material. By-products from skeletal red muscle of fresh tuna were efficiently fractionated to sarcoplasmic and myofibrillar fractions, prior to the identification based mainly on the combined searching of the peptide mass fingerprint (MALDI-TOF) and peptide fragment fingerprinting (MALDI LIFT-TOF/TOF) spectra of fifteen bands separated by 1D SDS-PAGE. Thus, the sarcoplasmic fraction contained myoglobin and several enzymes that are essential for efficient energy production, whereas the myofibrillar fraction had important contractile proteins, such as actin, tropomyosin, myosin or an isoform of the enzyme creatine kinase. Application of proteomic technologies has revealed new knowledge on the composition of important by-products from tuna species, enabling a better evaluation of their potential applications. Copyright © 2012 Elsevier Ltd. All rights reserved.

Substitutions in the Glycogenin-1 Gene Are Associated with the Evolution of Endothermy in Sharks and Tunas.

Science.gov (United States)

Ciezarek, Adam G; Dunning, Luke T; Jones, Catherine S; Noble, Leslie R; Humble, Emily; Stefanni, Sergio S; Savolainen, Vincent

2016-10-05

Despite 400-450 million years of independent evolution, a strong phenotypic convergence has occurred between two groups of fish: tunas and lamnid sharks. This convergence is characterized by centralization of red muscle, a distinctive swimming style (stiffened body powered through tail movements) and elevated body temperature (endothermy). Furthermore, both groups demonstrate elevated white muscle metabolic capacities. All these traits are unusual in fish and more likely evolved to support their fast-swimming, pelagic, predatory behavior. Here, we tested the hypothesis that their convergent evolution was driven by selection on a set of metabolic genes. We sequenced white muscle transcriptomes of six tuna, one mackerel, and three shark species, and supplemented this data set with previously published RNA-seq data. Using 26 species in total (including 7,032 tuna genes plus 1,719 shark genes), we constructed phylogenetic trees and carried out maximum-likelihood analyses of gene selection. We inferred several genes relating to metabolism to be under selection. We also found that the same one gene, glycogenin-1, evolved under positive selection independently in tunas and lamnid sharks, providing evidence of convergent selective pressures at gene level possibly underlying shared physiology. © The Author(s) 2016. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

Extracting of yellowfin tuna (Thunnus albacares) fish skin gelatin as influenced by alkaline concentration and extraction times

Science.gov (United States)

Mafazah, E. M.; Pranoto, Y.; Rohman, A.

2018-03-01

Yellowfin tuna (Thunnus albacares) skin is a by-product of the fish processing industry. Yellowfin tuna skin was used as materials for gelatin because it contains collagen. This study was conducted to determine the characteristics of yellowfin tuna skin gelatin (YSG). In this study, YSG was obtained by the extraction process in 0.01 M NaOH solution for 12 h. The results show that the yield of YSG was 12.49 % dry basis, with the gel strength of 291.73 g Bloom, viscosity of 8.6 cPs and melting point of 35 °C. The gel strength and melting point of YSG were lower than commercial bovine gelatin (CBG), which was 309.7401 g Bloom and 36.33 °C, respectively. However, the viscosity of YSG was higher than the CBG which was 5.6 cPs.

Nisin Migration in Shelf Stable, Tuna-Filled Tortillas During Storage

Science.gov (United States)

2014-09-22

INGREDIENTS AND PROCESSING ..........................................................................4 2.4 TUNA WRAP STORAGE...Leung, 1986 and Taub, 2003), meat (Pavey, 1972; Powers, 1981; Yang, 1997 and Richardson, 1995), seafood (Dymsza, 1979), eggs (Richardson, 2008 and...Incorporation of Preservatives, such as nitrites and antioxidants. (4) Thermal pasteurization by baking. (5) Appropriate Packaging, such as the

Trace elements in the kidney tissue of Bluefin Tuna ( Thunnus ...

African Journals Online (AJOL)

Trace elements, namely lead (Pb), copper (Cu), manganese (Mn), nickel (Ni), zinc (Zn), and iron (Fe), found in kidney tissues were analyzed and compared between wild/fattened and female/male bluefin tuna (BFT) in the Eastern Mediterranean region of Turkey. One hundred (that is, 50 female and 50 male) individual ...

Treatment of tuna cooking juices by nano filtration

International Nuclear Information System (INIS)

Walha, K. a.; Ben Amar, R.; Bourseau, P.; Jaouen, P.

2009-01-01

Canned tuna is among the largest commercial canned fishery product in Tunisia. This industry rejects many aqueous effluents (washing, thawing, rinsing and cooking waters). Cooking juice represents 50 pour cent of the total effluent volume. It has a high organic load and a very high salt content. For consequence, discarding directly the effluent in the environment is not possible and need further treatment. However, the juice seems to contain interesting flavour compounds. In this work, a membrane process system consisting in nano filtration was used to reduce the pollution load and to concentrate flavour compounds of tuna cooking juice. The NF membrane tested in this work concentrate the organic matter since the retentions are high, starting at 74 pour cent for total circulation and increasing up to 85 pour cent for volume reduction factor (VRF) of 5. The membrane undergoes severe fouling, it can be effectively cleaned through a complete basic-acid washing cycle. The effect of three chemical reagents was studied for the regeneration of the fouled membrane. In the future, we will focus on the concentrates obtained by NF: sensory analysis with a panel of trained tasters and analysis of aromatic molecules should allow to value the quality of the flavouring concentrates.

Cadmium, lead, tin, total mercury, and methylmercury in canned tuna commercialised in São Paulo, Brazil.

Science.gov (United States)

de Paiva, Esther Lima; Morgano, Marcelo Antonio; Milani, Raquel Fernanda

2017-09-01

The objective of this work was to determine levels of inorganic contaminants in 30 samples of five commercial brands of canned tuna, acquired on the local market in Campinas, São Paulo, Brazil, in the year of 2015. Total mercury and methylmercury (MeHg+) were determined by atomic absorption with thermal decomposition and amalgamation; and cadmium, lead, and tin were determined by inductively coupled plasma optical emission spectrometry. Results indicated that 20% of the tuna samples surpassed limits determined by the Brazilian and European Commission legislation for cadmium; for lead, the maximum value found was 59 µg kg -1 and tin was not detected in any samples. The maximum values found for total Hg and MeHg+ were 261 and 258 µg kg -1 , respectively. As from the results obtained, it was estimated that the consumption of four cans per week (540 g) of tuna canned in water could surpass the provisional tolerable monthly intake for MeHg + by 100%.

Tuna and dolphin associations in the North-east Atlantic: Evidence of different ecological niches from stable isotope and heavy metal measurements

International Nuclear Information System (INIS)

Das, K.; Lepoint, G.; Loizeau, V.; Debacker, V.; Dauby, P.; Bouquegneau, J.M.

2000-01-01

Associations of tunas and dolphins in the wild are quite frequent events and the question arises how predators requiring similar diet in the same habitat share their environmental resources. As isotopic composition of an animal is related to that of its preys, stable isotope ( 13 C/ 12 C and 15 N/ 14 N) analyses were performed in three predator species from the North-east Atlantic: the striped dolphin, Stenella coeruleoalba, the common dolphin Delphinus delphis and the albacore tuna, Thunnus alalunga, and compared to their previously described stomach content. Heavy metals (Cd, Zn, Cu and Fe) are mainly transferred through the diet and so, have been determined in the tissues of the animals. Tuna muscles display higher δ 15 N than in common and striped dolphins (mean: 11.4 vs. 10.3%o and 10.4%o, respectively) which reflects their higher trophic level nutrition. Higher δ 13 C are found in common (-18.4%o) and striped dolphin (-18.1%o) muscles than in albacore tuna (-19.3%o) probably in relation with its migratory pattern. The most striking feature is the presence of two levels of cadmium concentrations in the livers of the tunas (32 mg kg -1 dry weight (DW) vs. 5 mg kg -1 DW). These two groups also differ by their iron concentrations and their δ 15 N and δ 13 C liver values. These results suggest that in the Biscay Bay, tunas occupy two different ecological niches probably based on different squid inputs in their diet

Effects Of Using Fermented Tuna Innards In Fish Feed Formula To Pangasius Pangasius Sp. Growth

Directory of Open Access Journals (Sweden)

Alexander KorinusMarantika

2015-08-01

Full Text Available The purposes of this research were to determine the best dosage of the tuna innards fermentation powder substitution based on its survival rate specific growth rate and the conversion ratio of pangasius fish Pangasius sp. fish feed. The fish feed test formula contained 30 of raw protein. The tested fish feed consisted of fish powder mixed with substitution powder from fermented tuna innards. The substitution in fish feed A0 B10 C20 and D30. The number of pangasius fish thrown into 50x30x30 cm aquarium was 20 fish with average weight 3.120.03g. Fish feeding frequency was 5 5 three times a day at 0800 1300 and 1900 for 40 days. The results showed that with the added fermented tuna innards protein powder substitution dosage until 20 of the fish feed the survival rate improved reaching 100 the best specific growth rate was at 3.36 BB and the fish feed conversion ratio declined at the lowest 1.55 gg.

Significant histamine formation in tuna ( Thunnus albacares ) at 2 degrees C - effect of vacuum- and modified atmosphere-packaging on psychrotolerant bacteria

DEFF Research Database (Denmark)

Emborg, Jette; Laursen, B. G.; Dalgaard, Paw

2005-01-01

Occurrence and importance of psychrotolerant histamine producing bacteria in chilled fresh tuna were demonstrated in the present study. The objective was to evaluate microbial formation of histamine and biogenic amines in chilled fresh tuna from the Indian Ocean and stored either vacuum-packed (VP...

77 FR 21015 - Atlantic Highly Migratory Species; Atlantic Bluefin Tuna Fisheries

Science.gov (United States)

2012-04-09

... DEPARTMENT OF COMMERCE National Oceanic and Atmospheric Administration 50 CFR Part 635 [Docket No. 110210132-1275-02] RIN 0648-XB116 Atlantic Highly Migratory Species; Atlantic Bluefin Tuna Fisheries AGENCY... to their ability to attract customers. In addition, 2011 Large Pelagics Survey estimates indicate...

76 FR 18416 - Atlantic Highly Migratory Species; Atlantic Bluefin Tuna Fisheries

Science.gov (United States)

2011-04-04

... DEPARTMENT OF COMMERCE National Oceanic and Atmospheric Administration 50 CFR Part 635 [Docket No. 100317152-0176-01] RIN 0648-XA327 Atlantic Highly Migratory Species; Atlantic Bluefin Tuna Fisheries AGENCY... ability to attract customers. In addition, recent Large Pelagics Survey estimates indicate that charter...

Synthesis of Monoacylglycerol Rich in Polyunsaturated Fatty Acids from Tuna Oil with Immobilized Lipase AK

DEFF Research Database (Denmark)

Pawongrat, Ratchapol; Xu, Xuebing; H-Kittikun, Aran

2007-01-01

The aim of this study was to produce monoacylglycerols (MAG) rich in polyunsaturated fatty acids (PUFA), especially eicosapentaenoic acid (EPA) and docosahexaenoic acid (DHA), by glycerolysis of tuna oil with lipase AK from Pseudomonas fluorescence immobilized on Accurel EP-100 (IM-AK). tert...... on tuna oil. The temperature was controlled at 45 degrees C. Under these conditions, with a 24 h reaction, the yield of MAG was 24.6%, but containing 56.0 wt% PUFA (EPA and DHA). Stability of the IM-AK was also studied. The hydrolytic activity of the enzyme remained at 88% and 80% of initial activity...

Pelagic shark bycatch in the tuna- and swordfish-directed longline ...

African Journals Online (AJOL)

The capture of pelagic sharks as bycatch of the South African pelagic longline fleet targeting tuna Thunnus spp. and swordfish Xiphias gladius was investigated during the period 1998–2005. In all, 26 species were caught, of which six are listed by the International Union for Conservation of Nature (IUCN) as Vulnerable and ...

Reducing the Bitterness of Tuna (Euthynnus pelamis) Dark Meat with Lactobacillus casei subsp. casei ATCC 393

OpenAIRE

Ernani S. Sant’Anna; Luiz H. Beirão; Fabiano Cleber Bertoldi

2004-01-01

During the process of canning tuna fish, considerable amounts of dark tuna meat are left over because of its bitterness, which are then used in the production of animal food. Fermentation with Lactobacillus casei subsp. casei ATCC 393 was used as an alternative to reduce this bitter taste. Samples of meat were prepared, vacuum packed and then stored at –18 °C. The frozen dark meat was used immediately after defrosting and the experiment was carried out with 2 and 4 % of NaCl with the addition...

78 FR 20258 - Atlantic Highly Migratory Species; Atlantic Bluefin Tuna Fisheries

Science.gov (United States)

2013-04-04

... DEPARTMENT OF COMMERCE National Oceanic and Atmospheric Administration 50 CFR Part 635 [Docket No. 120306154-2241-02] RIN 0648-XC593 Atlantic Highly Migratory Species; Atlantic Bluefin Tuna Fisheries AGENCY... retention limit is vital to their ability to attract customers. In addition, 2012 Large Pelagics Survey...

Determination of multi-element composition of Vietnamese marine sediment and tuna fish by k0-standardized neutron activation analysis

International Nuclear Information System (INIS)

Manh-Dung Ho; Quang-Thien Tran; Van-Doanh Ho; Thi-Sy Nguyen

2016-01-01

The k 0 -standardized neutron activation analysis (k 0 -NAA) has been applied for determination of multiple elements (25 elements: Al, As, Ba, Br, Ca, Cl, Co, Cr, Cs, Cu, Eu, Fe, Hg, K, La, Mg, Na, Rb, Sc, Se, Sm, Th, Ti, V and Zn) in marine sediment and tuna fish. About 50 marine sediment and 9 tuna fish samples were collected in two coastal areas of Vietnam. The health risk index (HRI) values of As and Br were higher than 1.0 for the tuna fish. Also, HRI value of Hg was 8.92 × 10 -1 indicating a relatively high potential health risk, whiles Co and Mn with HRIs = 1.56 × 10 -4 and 8.56 × 10 -4 , respectively, have the lowest potential health risks. Average enrichment factors using Al as a reference element (EF Al ) were higher than 1.5 for Eu, La, Zn, Th, Cs and As in which the highest EF Al value for As was higher than 10. This study showed that the HRI value of As in the tuna fish correlated positively with the EF Al value for the element in the marine sediment. (author)

Low-temperature transitions in cod and tuna determined by differential scanning calorimetry

DEFF Research Database (Denmark)

Jensen, Kristina Nedenskov; Jørgensen, Bo; Nielsen, Jette

2003-01-01

Differential scanning calorimetry measurements have revealed different thermal transitions in cod and tuna samples. Transition temperatures detected Lit -11degreesC, -15degreesC and -21degreesC were highly dependent on the annealing temperature. In tuna muscle an additional transition was observed...... at -72degreesC. This transition appeared differently than the thermal events observed at higher temperatures, as it spanned a broad temperature interval of 25degreesC. The transition was comparable to low-temperature glass transitions reported in protein-rich systems. No transition at this low...... temperature was detected in cod samples. The transitions observed at higher temperatures (-11degreesC to -21degreesC) may possibly stein from a glassy matrix containing muscle proteins. However, the presence of a glass transition at - 11degreesC was in disagreement with the low storage stability at -18degrees...

Seasonal Variations of Oceanographic Variables and Eastern Little Tuna (Euthynnus affinis) Catches in the North Indramayu Waters Java Sea

Science.gov (United States)

Syamsuddin, Mega; Sunarto; Yuliadi, Lintang

2018-02-01

The remotely derived oceanographic variables included sea surface temperature (SST), chlorophyll-a (Chl-a) and Eastern Little Tuna (Euthynnus affinis) catches are used as a combined dataset to understand the seasonal variation of oceanographic variables and Eastern Little Tuna catches in the north Indramayu waters, Java Sea. The fish catches and remotely sensed data were analysed for the 5 years datasets from 2010-2014. This study has shown the effect of monsoon inducing oceanographic condition in the study area. Seasonal change features were dominant for all the selected oceanographic parameters of SST and Chl-a, and also Eastern Little Tuna catches, respectively. The Eastern Little Tuna catch rates have the peak season from September to December (700 to 1000) ton that corresponded with the value of SST ranging from 29 °C to 30 °C following the decreasing of Chl-a concentrations in September to November (0.4 to 0.5) mg m-3. The monsoonal system plays a great role in determining the variability of oceanographic conditions and catch in the north Indramayu waters, Java Sea. The catches seemed higher during the northwest monsoon than in the southeast monsoon for all year observations except in 2010. The wavelet spectrum analysis results confirmed that Eastern Little Tuna catches had seasonal and inter-annual variations during 2012-2014. The SST had seasonal variations during 2010-2014. The Chl-a also showed seasonal variations during 2010-2011 and interannual variations during 2011-2014. Our results would benefit the fishermen and policy makers to have better management for sustainable catch in the study area.

Transectional heat transfer in thermoregulating bigeye tuna (Thunnus obesus) - a 2D heat flux model.

Science.gov (United States)

Boye, Jess; Musyl, Michael; Brill, Richard; Malte, Hans

2009-11-01

We developed a 2D heat flux model to elucidate routes and rates of heat transfer within bigeye tuna Thunnus obesus Lowe 1839 in both steady-state and time-dependent settings. In modeling the former situation, we adjusted the efficiencies of heat conservation in the red and the white muscle so as to make the output of the model agree as closely as possible with observed cross-sectional isotherms. In modeling the latter situation, we applied the heat exchanger efficiencies from the steady-state model to predict the distribution of temperature and heat fluxes in bigeye tuna during their extensive daily vertical excursions. The simulations yielded a close match to the data recorded in free-swimming fish and strongly point to the importance of the heat-producing and heat-conserving properties of the white muscle. The best correspondence between model output and observed data was obtained when the countercurrent heat exchangers in the blood flow pathways to the red and white muscle retained 99% and 96% (respectively) of the heat produced in these tissues. Our model confirms that the ability of bigeye tuna to maintain elevated muscle temperatures during their extensive daily vertical movements depends on their ability to rapidly modulate heating and cooling rates. This study shows that the differential cooling and heating rates could be fully accounted for by a mechanism where blood flow to the swimming muscles is either exclusively through the heat exchangers or completely shunted around them, depending on the ambient temperature relative to the body temperature. Our results therefore strongly suggest that such a mechanism is involved in the extensive physiological thermoregulatory abilities of endothermic bigeye tuna.

SINTESIS FOSFOLIPID MENGANDUNG ASAM LEMAK w-3 DARI FOSFOLIPID KEDELAI DAN MINYAK KAYA ASAM LEMAK w-3 DARI HASIL SAMPING PENGALENGAN TUNA

Directory of Open Access Journals (Sweden)

Teti Estiasih

2013-03-01

Full Text Available Synthesis of Phospholipid Containing w-3 Fatty Acids from Soy Phospholipidsand Fish Oil Enriched with w-3 Fatty Acids from Tuna Canning Processing Teti Estiasih, Moch. Nur, Jaya Mahar Maligan, Satrio Maulana ABSTRAK Keunggulan fosfolipid dapat ditingkatkan dengan menggabungkan asam lemak w-3, terutama EPA (eicosapentaenoicacid, C20:5w-3 dan DHA (docosahexaenoic acid, C22:6w-3, pada struktur fosfolipid sehingga diperoleh fosfolipidterstruktur. Strukturisasi fosfolipid kedelai komersial dilakukan dengan cara mengganti asam lemak dari fosfolipidkedelai dengan asam lemak w-3 dari minyak kaya asam lemak w-3 dari hasil samping pengalengan tuna. Sintesisfosfolipid terstruktur dilakukan secara asidolisis enzimatis dengan menggunakan lipase dari R. miehei. Faktor yangdikaji pada proses sintesis ini adalah konsentrasi enzim dan lama sintesis. Tingkat inkorporasi EPA dan DHA padastruktur fosfolipid dipengaruhi oleh konsentrasi enzim. Pada konsentrasi enzim yang rendah, peningkatan lama reaksisetelah tingkat inkoporasi optimum tercapai cenderung menyebabkan penurunan tingkat inkorporasi EPA+DHA. Padakonsentrasi enzim yang tinggi, lama reaksi tampaknya tidak mempengaruhi tingkat inkorporasi. Tingkat inkorporasiDHA lebih tinggi dari EPA sehingga fosfolipid terstruktur yang dihasilkan sangat sesuai digunakan untuk produk panganyang memerlukan kadar DHA tinggi. Ada preferensi inkorporasi EPA+DHA pada fosfatidiletanolamin dibandingkanjenis fosfolipid yang lain.Kata kunci: Fosfolipid terstruktur, asam lemak w-3, EPA, DHA, asidolisis enzimatis ABSTRACT The superiority of soy phospholipids could be obtained by incorporation of w-3 fatty acids into phospholipids structure,especially EPA (eicosapentaenoic acid, C20:5w-3 and DHA docosahexaenoic acid, C22:6w-3. Structurization ofcommercial soy phospholipids was conducted by replacement of natural fatty acids in soy phospholipids by w-3 fattyacids from w-3 fatty acids enriched Þ sh oil from tuna canning processing

EVALUASI IMPLEMENTASI MANAJEMEN BERBASIS SEKOLAH (MBSDI SMK TELEKOMUNIKASI TUNAS HARAPAN KABUPATEN SEMARANG (STUDI TENTANG PEMBELAJARAN PAKEM

Directory of Open Access Journals (Sweden)

Prima Widyatmoko

2015-06-01

Full Text Available This study aims at evaluating (a the design of implementation of PAKEM learning in SMK Telekomunikasi Tunas Harapan, (b the installation of implementation of PAKEM learning in SMK Telekomunikasi Tunas Harapan, (c the process of implementation of PAKEM learning in SMK Telekomunikasi Tunas Harapan, and (d the product evaluation of implementation of PAKEM learning in SMK Telekomunikasi Tunas Harapan. This is a evaluative research employing Discrepency Evaluation Model. Techniques of collecting data used are interview, queationaires, documentations study, and observation. Triangulation technique is used to support data validity. The results of this study are (a the design of implementation of PAKEM learning has been formulated with regard to educators criteria including input, process, and output aspects, (b there is still 2% discrepency in teachers’ certificates. Qualifications of teachers’ academic and teachers’ competencies in PAKEM learning are in line with the standards determined, (c criteria of succesful PAKEM learning program have not been fulfiled entirely. Syllabus and lesson plan preparation reach 85%. Active learning process goes to low discrepency (13%. Creative learning process goes to moderate discrepency (31%. Effective learning process goes to low discrepency (18%. Fun learning process goes to low discrepency (15%. In learning achievement assessment, teachers have done their responsibilities well, (d the products in PAKEM learning include achievement in affective aspect where 90% students gain predicate “good”, cognitive aspect where 80% students gain B-, and psychomotoric aspect where 79% students gain B-.

Effect of electron irradiation and bayberry polyphenols on the quality change of yellowfin tuna fillets during refrigerated storage

Science.gov (United States)

Bu, Tingting; Jin, Yang; Li, Xiaohui; Zhang, Jinjie; Xu, Dalun; Yang, Wenge; Lou, Qiaoming

2017-09-01

This study evaluated the synergistic effect of bayberry polyphenols and electron irradiation in controlling the chemical, microbiological and sensory changes of raw yellowfin tuna fillets at 4 °C for 7 days. The results indicated that the initial values of each index were dose-dependent. The dose of 5 kGy notably accelerated adenosine triphosphate degradation and lipid oxidation, while the doses of 1 and 3 kGy had acceptable sensory quality and yielded a shelf-life of 5 days. The addition of bayberry polyphenols had evident effect in inhibiting freshness breakdown, bacteria growth, histamine formation, and discoloration of tuna fillets. Bayberry polyphenols, as an antioxidant, could inhibit lipid oxidation and sensory side-effects made by irradiation up to 3 kGy. The dose of 1-3 kGy coupled with bayberry polyphenols was optimum to preserve tuna fillets which prolonged the shelf-life to 7 days.

Mercury levels of yellowfin tuna (Thunnus albacares) are associated with capture location.

Science.gov (United States)

Nicklisch, Sascha C T; Bonito, Lindsay T; Sandin, Stuart; Hamdoun, Amro

2017-10-01

Mercury is a toxic compound to which humans are exposed by consumption of fish. Current fish consumption advisories focus on minimizing the risk posed by the species that are most likely to have high levels of mercury. Less accounted for is the variation within species, and the potential role of the geographic origin of a fish in determining its mercury level. Here we surveyed the mercury levels in 117 yellowfin tuna caught from 12 different locations worldwide. Our results indicated significant variation in yellowfin tuna methylmercury load, with levels that ranged from 0.03 to 0.82 μg/g wet weight across individual fish. Mean mercury levels were only weakly associated with fish size (R 2  mercury load, and argue for better traceability of fish to improve the accuracy of exposure risk predictions. Copyright © 2017 Elsevier Ltd. All rights reserved.

Gender Transformations and Colonial Displacements in Laura Antillano's "Tuna de mar"

Science.gov (United States)

Reid, Alana

2015-01-01

This paper examines the trajectories of two characters in Laura Antillano's short story, "Tuna de mar" (1991), as they navigate interrelated systems of power and attempt to position themselves closer to, or further away from, the margins. Set in the late eighteenth century, the tale features a female protagonist who escapes prostitution…

V ITER chrání zimu tuna stříbra

Czech Academy of Sciences Publication Activity Database

Řípa, Milan

Říjen (2016) ISSN 2464-7888 Institutional support: RVO:61389021 Keywords : fusion * tokamak * ITER * thermal shield * silver * superconductivity Subject RIV: BL - Plasma and Gas Discharge Physics http://www.3pol.cz/cz/rubriky/jaderna-fyzika-a-energetika/1922-v-iter-chrani-zimu-tuna-stribra

The imprint of anthropogenic CO2 emissions on Atlantic bluefin tuna otoliths

Science.gov (United States)

Fraile, Igaratza; Arrizabalaga, Haritz; Groeneveld, Jeroen; Kölling, Martin; Santos, Miguel Neves; Macías, David; Addis, Piero; Dettman, David L.; Karakulak, Saadet; Deguara, Simeon; Rooker, Jay R.

2016-06-01

Otoliths of Atlantic bluefin tuna (Thunnus thynnus) collected from the Mediterranean Sea and North Atlantic Ocean were analyzed to evaluate changes in the seawater isotopic composition over time. We report an annual otolith δ13C record that documents the magnitude of the δ13C depletion in the Mediterranean Sea between 1989 and 2010. Atlantic bluefin tuna in our sample (n = 632) ranged from 1 to 22 years, and otolith material corresponding to the first year of life (back-calculated birth year) was used to reconstruct seawater isotopic composition. Otolith δ18O remained relatively stable between 1989 and 2010, whereas a statistically significant decrease in δ13C was detected across the time interval investigated, with a rate of decline of 0.05‰ yr- 1 (- 0.94‰ depletion throughout the recorded period). The depletion in otolith δ13C over time was associated with the oceanic uptake of anthropogenically derived CO2.

Readiness Assessment Towards Smart Manufacturing System for Tuna Processing Industry in Indonesia

Science.gov (United States)

Anggrahini, D.; Kurniati, N.; Karningsih, P. D.; Parenreng, S. M.; Syahroni, N.

2018-04-01

Marine product processing is one of the top priority clusters in the national development. Tuna, as a kind of deep ocean fishes, has the highest number of production that significantly increased throughout the years. Indonesia government encourages tuna processing industry, which are mostly dominated by small to medium enterprises, to grow continuously. Nowadays, manufacturers are facing substantial challenges in adopting modern system and technology that will lead a significant improvement through the internet of things (IoT). A smart factory transform integrated manufacturing process, in a high speed processing to respond customer needs. It has some positive impacts, such as increasing productivity, reducing set up time, shortening marketing and other support activities, hence the process is being more flexible and efficient. To implement smart manufacturing system, factories should know the readiness at any level of them, technology capability and strategy appropriateness. This exploratory study aims to identify the criterias, and develop an assessment tools to measure the level towards smart factory.

Distribution and transportability of hexabromocyclododecane (HBCD) in the Asia-Pacific region using skipjack tuna as a bioindicator

Energy Technology Data Exchange (ETDEWEB)

Ueno, Daisuke [National Water Research Institute, Environment Canada, 867 Lakeshore Road, P.O. Box 5050, Burlington ON L7R 4A6 (Canada) and Center for Marine Environmental Studies (CMES), Ehime University, Ehime (Japan)]. E-mail: ueno@qg8.so-net.ne.jp; Alaee, Mehran [National Water Research Institute, Environment Canada, 867 Lakeshore Road, P.O. Box 5050, Burlington ON L7R 4A6 (Canada); Marvin, Chris [National Water Research Institute, Environment Canada, 867 Lakeshore Road, P.O. Box 5050, Burlington ON L7R 4A6 (Canada); Muir, Derek C.G. [National Water Research Institute, Environment Canada, 867 Lakeshore Road, P.O. Box 5050, Burlington ON L7R 4A6 (Canada); Macinnis, Gordia [National Water Research Institute, Environment Canada, 867 Lakeshore Road, P.O. Box 5050, Burlington ON L7R 4A6 (Canada); Reiner, Eric [Ontario Ministry of the Environment, Toronto, ON (Canada); Crozier, Patrick [Ontario Ministry of the Environment, Toronto, ON (Canada); Furdui, Vasile I. [Ontario Ministry of the Environment, Toronto, ON (Canada); Subramanian, Annamalai [Center for Marine Environmental Studies (CMES), Ehime University, Ehime (Japan); Fillmann, Gilberto [Department of Oceanography, Fundacao Universidade Federal do Rio Grande, Rio Grande (Brazil); Lam, Paul K.S. [Department of Biology and Chemistry, City University of Hong Kong (Hong Kong); Zheng, Gene J. [Department of Biology and Chemistry, City University of Hong Kong (Hong Kong); Muchtar, Muswerry [Research and Development Center for Oceanology, Indonesian Institute of Sciences, Jakarta (Indonesia); Razak, Hamidah [Research and Development Center for Oceanology, Indonesian Institute of Sciences, Jakarta (Indonesia); Prudente, Maricar [Science Education Department, De La Salle University, Manila (Philippines); Chung, Kyu-hyuck [College of Pharmacy, Sungkyunkwan University, Seoul, South Korea (Korea); Tanabe, Shinsuke [Center for Marine Environmental Studies (CMES), Ehime University, Ehime (Japan)

2006-11-15

The geographical distribution of hexabromocyclododecane (HBCD) was investigated through analysis of muscle tissue of skipjack tuna (Katsuwonus pelamis) collected from offshore waters of Asia-Pacific region (Japan, Taiwan, Philippines, Indonesia, Seychelles, Brazil, Japan Sea, East China Sea, South China Sea, Indian Ocean and North Pacific Ocean). HBCD was detected in almost all samples analyzed (<0.1 to 45 ng/g lipid weight basis), indicating widespread presence of this compound in the marine environment. Elevated concentrations of HBCD were found in skipjack tuna from areas around Japan, which have the larger modern industrial/urban societies, and implicated these areas as primary regional sources. All three individual HBCD isomers ({alpha}-, {gamma}- and {beta}-HBCD) were detected in almost all samples; the percentage contribution of the {alpha}-isomer to total HBCD increased with increasing latitude. The estimated empirical 1/2 distance for {alpha}-HBCD was 8500 km, which is one of the highest atmospheric transportability among various halogenated persistent organic pollutants (POPs). - Geographical distribution of hexabromocyclododecane (HBCD) in offshore water of Asia-Pacific region was investigated using skipjack tuna as a bioindicator.

Distribution and transportability of hexabromocyclododecane (HBCD) in the Asia-Pacific region using skipjack tuna as a bioindicator

International Nuclear Information System (INIS)

Ueno, Daisuke; Alaee, Mehran; Marvin, Chris; Muir, Derek C.G.; Macinnis, Gordia; Reiner, Eric; Crozier, Patrick; Furdui, Vasile I.; Subramanian, Annamalai; Fillmann, Gilberto; Lam, Paul K.S.; Zheng, Gene J.; Muchtar, Muswerry; Razak, Hamidah; Prudente, Maricar; Chung, Kyu-hyuck; Tanabe, Shinsuke

2006-01-01

The geographical distribution of hexabromocyclododecane (HBCD) was investigated through analysis of muscle tissue of skipjack tuna (Katsuwonus pelamis) collected from offshore waters of Asia-Pacific region (Japan, Taiwan, Philippines, Indonesia, Seychelles, Brazil, Japan Sea, East China Sea, South China Sea, Indian Ocean and North Pacific Ocean). HBCD was detected in almost all samples analyzed (<0.1 to 45 ng/g lipid weight basis), indicating widespread presence of this compound in the marine environment. Elevated concentrations of HBCD were found in skipjack tuna from areas around Japan, which have the larger modern industrial/urban societies, and implicated these areas as primary regional sources. All three individual HBCD isomers (α-, γ- and β-HBCD) were detected in almost all samples; the percentage contribution of the α-isomer to total HBCD increased with increasing latitude. The estimated empirical 1/2 distance for α-HBCD was 8500 km, which is one of the highest atmospheric transportability among various halogenated persistent organic pollutants (POPs). - Geographical distribution of hexabromocyclododecane (HBCD) in offshore water of Asia-Pacific region was investigated using skipjack tuna as a bioindicator

Atlantic Bluefin Tuna (Thunnus thynnus) Biometrics and Condition.

Science.gov (United States)

Rodriguez-Marin, Enrique; Ortiz, Mauricio; Ortiz de Urbina, José María; Quelle, Pablo; Walter, John; Abid, Noureddine; Addis, Piero; Alot, Enrique; Andrushchenko, Irene; Deguara, Simeon; Di Natale, Antonio; Gatt, Mark; Golet, Walter; Karakulak, Saadet; Kimoto, Ai; Macias, David; Saber, Samar; Santos, Miguel Neves; Zarrad, Rafik

2015-01-01

The compiled data for this study represents the first Atlantic and Mediterranean-wide effort to pool all available biometric data for Atlantic bluefin tuna (Thunnus thynnus) with the collaboration of many countries and scientific groups. Biometric relationships were based on an extensive sampling (over 140,000 fish sampled), covering most of the fishing areas for this species in the North Atlantic Ocean and Mediterranean Sea. Sensitivity analyses were carried out to evaluate the representativeness of sampling and explore the most adequate procedure to fit the weight-length relationship (WLR). The selected model for the WLRs by stock included standardized data series (common measurement types) weighted by the inverse variability. There was little difference between annual stock-specific round weight-straight fork length relationships, with an overall difference of 6% in weight. The predicted weight by month was estimated as an additional component in the exponent of the weight-length function. The analyses of monthly variations of fish condition by stock, maturity state and geographic area reflect annual cycles of spawning and feeding behavior. We update and improve upon the biometric relationships for bluefin currently used by the International Commission for the Conservation of Atlantic Tunas, by incorporating substantially larger datasets than ever previously compiled, providing complete documentation of sources and employing robust statistical fitting. WLRs and other conversion factors estimated in this study differ from the ones used in previous bluefin stock assessments.

Trophic niches of sympatric tropical tuna in the Western Indian Ocean inferred by stable isotopes and neutral fatty acids

Science.gov (United States)

Sardenne, Fany; Bodin, Nathalie; Chassot, Emmanuel; Amiel, Aurélien; Fouché, Edwin; Degroote, Maxime; Hollanda, Stéphanie; Pethybridge, Heidi; Lebreton, Benoit; Guillou, Gaël; Ménard, Frédéric

2016-08-01

This study examined the trophic ecology of three sympatric tropical tuna species (bigeye BET, skipjack SKJ, and yellowfin YFT) sampled in the Western Indian Ocean throughout 2013. Specifically we explored inter-specific resource partitioning and ontogenetic variability using neutral fatty acids and stable isotope analysis of liver and muscle from small (⩽100 cm fork length, FL) and large (>100 cm FL) tuna collected in mixed schools at the surface by purse-seine. Both biochemical tracers were used to calculate trophic niche indices that collectively revealed high potential for resource overlap, especially among small tuna. Resource overlap appeared strongest between BET and YFT, with SKJ tissues having high carbon isotope (δ13C) values (-17 ± 0.3‰), lower nitrogen isotope (δ15N) values (11.4 ± 0.6‰), and higher relative proportion of poly-unsaturated fatty acids (PUFA) than the two other species, indicating a different diet. Size was found to be a strong predictor for most biochemical tracers in the three species with δ13C, δ15N and total lipid content in the liver. In the larger species (YFT and BET), proportions of mono-unsaturated fatty acids typically increased with size, while quantities of PUFA decreased. In addition to ontogenetic variability, trophic markers were shown to vary between sampling area and season: higher lipid reserves and δ15N values, and lower δ13C values occurred during monsoon periods around Seychelles than in the Mozambique Channel (parted from about 1500 km). Our multi-tracer approach reveals the magnitude of potential competitive interactions in mixed tropical tuna schools at both small and large sizes and demonstrates that ontogenetic niche differentiation acts as a major factor of coexistence in tropical tuna.

DISKRIMINASI KELAMIN PADA IKAN TUNA SIRIP KUNING, Yellowfin tuna MENGGUNAKAN ANALISIS DOT BLOT DAN ELISA

Directory of Open Access Journals (Sweden)

Gusti Ngurah Permana

2014-08-01

Full Text Available Pemahaman tentang penentuan jenis kelamin dalam populasi induk merupakan hal yang sangat penting bagi keberhasilan program pembenihan. Pengukuran reaksi antibodi dan aktivitas hormon testosterone, serta estradiol adalah metode dengan potensi yang secara akurat dapat menentukan jenis kelamin ikan tanpa mematikan ikan. Tujuan penelitian ini adalah untuk mengetahui akurasi metode dot blot dan ELISA dengan 11-ketotestorsterone (11-KT yang tersedia secara komersial EIA-kit untuk membedakan jenis kelamin ikan tuna sirip kuning. Hasil analisis menunjukkan bahwa metode dot blot menghasilkan ekspresi vitelogenin tampak jelas pada individu betina dan efek plasma terlihat transparan, jika dibandingkan dengan individu jantan. Interpretasi dari metode ini memerlukan pengalaman dan keahlian dalam akurasi pembacaan hasil. Aktivitas hormon 11-KT dengan sampel klip sirip dan plasma memberikan hasil yang baik dengan aktivitas hormon terlihat jelas.

Comportamiento de la retinopatía de la prematuridad en la provincia Las Tunas Performance of retinopathy of prematurity in Las Tunas province

Directory of Open Access Journals (Sweden)

Yunia Herbania Labrada Rodríguez

2006-06-01

Full Text Available Se realizó un estudio observacional de tipo transversal en la provincia de Las Tunas en el período comprendido desde enero de 2002 a diciembre de 2004. El universo estuvo constituido por 14 503 nacidos vivos, la muestra la integraron 227 recién nacidos prematuros a los cuales se les realizó oftalmoscopia indirecta. La tasa de incidencia de retinopatía de la prematuridad fue de 0,10. Los factores de riesgo más relevantes fueron la prematuridad y el bajo peso al nacer. La retinopatía de la prematuridad fue más frecuente en recién nacidos de peso menor o igual a 1 500 g y la edad gestacional entre 30 y 34 semanas. La retinopatía de la prematuridad estadio I predominó en la serieAn observational cross-sectional study was conducted in Las Tunas province from January 2002 to December 2004. The universe of study was made up of 14 503 live births and the sample was composed by 227 premature newborns, who were performed indirect ophtalmoscopy. The incidence rate was 0,10. The most relevant risk factors were prematurity and low birthweight. Retinopathy of prematurity was more frequent in newborns weighing 1 500 g or less at birth and in gestational age of 30-34 weeks. Retinopathy of prematurity stage 1 predominated

Tuna cannery energy conservation interventions: Technical/economic feasibility study

Energy Technology Data Exchange (ETDEWEB)

Florio, G. (Calabria Univ. Arcavacata di Rende (Italy). Dipt. di Meccanica)

An energy audit was conducted on a 230,000 can (x 80 g)/day tuna cannery to determine where technically and economically feasible energy savings interventions could be made. The plant is equipped with an oil fired boiler which supplies steam for cooking and sterilization purposes. In the energy/cost analysis, it was found that the most significant and cost effective energy savings could be obtained by the substitution of the four sterilization chambers with three sets of twin sterilization/heat exchange chambers.

UTILITY OF FISHERY HIGH SCHOOL DATA IN EXAMINING SPATIAL AND TEMPORAL CATCH AND EFFORT TRENDS IN THE INDONESIAN LONGLINE TUNA FISHERY

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Lilis Sadiyah

2015-12-01

Full Text Available One of the endeavours to address the shortage of catch per unit effort (CPUE information from the Indonesian Indian Ocean tuna fishery is the collation of a large amount of catch and effort data collected by Indonesian Fisheries High School students (“FHS data”. This paper attempts to investigate spatial-temporal patterns of catch and effort of the FHS data for the main tuna species caught by the fishery: bigeye tuna (Thunnus obesus - BET, yellowfin tuna (T. albacares - YFT, albacore (T. alalunga - ALB and southern bluefin tuna (T.maccoyii - SBT. Reported sets occurred in the Eastern Indian Ocean, north and south of 20°S. Recorded effort from the FHS data set was concentrated within the only known SBT spawning ground. However, within this data set, SBT were recorded in the lowest catch proportion relative to BET, YFT and ALB. The catch composition data suggested that YFT and ALB were predominantly targeted by the fishery, with ALB and SBT most predominantly recorded south of 20°S, whereas BET and YFT were mostly recorded north of 20°S. Unfortunately, there was no strong information on targeting practices reported by this data set, limiting any attempts to understand the factors that influenced those results. As the sampling predominantly occurred in between July and December, the data are not representative of fishing activities throughout the entire year, and any seasonal patterns from the FHS data set are biased. In addition, the FHS data set is prone to observation error and uncertainty in terms of fish identification and fishing location. Therefore, the FHS data set needs to be interpreted with caution.

77 FR 19175 - Atlantic Highly Migratory Species; 2012 Atlantic Bluefin Tuna Quota Specifications

Science.gov (United States)

2012-03-30

...). Attachments to electronic comments will be accepted in Microsoft Word or Excel, WordPerfect, or Adobe PDF file... active member of the International Commission for the Conservation of Atlantic Tunas (ICCAT), the United States implements binding ICCAT recommendations to comply with this international treaty. ATCA authorizes...

The age of the Tunas formation in the Sauce Grande basin-Ventana foldbelt (Argentina): Implications for the Permian evolution of the southwestern margin of Gondwana

Science.gov (United States)

López-Gamundí, Oscar; Fildani, Andrea; Weislogel, Amy; Rossello, Eduardo

2013-08-01

New SHRIMP radiogenic isotope dating on zircons in tuffs (280.8 ± 1.9 Ma) confirms the Early Permian (Artinskian) age of the uppermost section of the Tunas Formation. Tuff-rich levels in the Tunas Formation are exposed in the Ventana foldbelt of central Argentina; they are part of a deltaic to fluvial section corresponding to the late overfilled stage of the Late Paleozoic Sauce Grande foreland basin. Recent SHRIMP dating of zircons from the basal Choiyoi volcanics exposed in western Argentina yielded an age of 281.4 ± 2.5 Ma (Rocha-Campos et al., 2011). The new data for the Tunas tuffs suggest that the volcanism present in the Sauce Grande basin can be considered as the distal equivalent of the earliest episodes of the Choiyoi volcanism of western Argentina. From the palaeoclimatic viewpoint the new Tunas SHRIMP age confirms that by early Artinskian glacial conditions ceased in the Sauce Grande basin and, probably, in adajacent basins in western Gondwana.

Discovering where bluefin tuna, Thunnus thynnus, might go: using environmental and fishery data to map potential tuna habitat in the eastern Mediterranean Sea

OpenAIRE

Dimitrios Damalas; Persefoni Megalofonou

2012-01-01

Based on a dataset derived from commercial fisheries in the eastern Mediterranean Sea in 1998-2005, we applied generalized additive models (GAMs) to investigate the relative influence of a range of environmental factors on catch rates of Atlantic bluefin tuna (Thunnus thynnus Linnaeus, 1785). GAM analyses were conducted by separately modelling (1) the probability of making a catch (encountering a school), and (2) the positive catch rates (school size). Results suggested intra-annual variation...

Dynamic optimal foraging theory explains vertical migrations of bigeye tuna

DEFF Research Database (Denmark)

Thygesen, Uffe Høgsbro; Sommer, Lene; Evans, Karen

2016-01-01

Bigeye tuna are known for remarkable daytime vertical migrations between deep water, where food is abundant but the water is cold, and the surface, where water is warm but food is relatively scarce. Here we investigate if these dive patterns can be explained by dynamic optimal foraging theory...... behaves such as to maximize its energy gains. The model therefore provides insight into the processes underlying observed behavioral patterns and allows generating predictions of foraging behavior in unobserved environments...

Revisiting the vulnerability of juvenile bigeye (Thunnus obesus) and yellowfin (T. albacares) tuna caught by purse-seine fisheries while associating with surface waters and floating objects.

Science.gov (United States)

Scutt Phillips, Joe; Pilling, Graham M; Leroy, Bruno; Evans, Karen; Usu, Thomas; Lam, Chi Hin; Schaefer, Kurt M; Nicol, Simon

2017-01-01

Tuna fisheries catch over three million tonnes of skipjack tuna (Katsuwonus pelamis) each year, the majority of which come from purse-seine vessels targeting fish associated with man-made fish aggregating devices (FADs). A significant challenge for fisheries management is to maximize the efficiency of skipjack tuna catches whilst minimizing the bycatch of small and immature bigeye (Thunnus obesus) and yellowfin (T. albacares) tuna, for which long-term sustainability is uncertain in 75% of the world's stocks. To better manage the issues common with this fishing method, an improved understanding of tuna behaviour around FADs is necessary. We probabilistically classified the vertical behavioural patterns of 50 bigeye and 35 yellowfin tuna (mean fork length 72cm and 70cm, respectively) electronically tagged throughout the western and central Pacific Ocean into shallow and deep states, using a state-space modelling approach. The occurrence of surface-association behaviours, defined as an individual remaining in a shallow state for 24-hours, was examined in relation to known capture events and FAD density. In general, surface-association events for both species were short and lasted on average less than three days, although events as long as 28 days were observed, and were more common in yellowfin when in archipelagic waters. Events were longest immediately following tagging in 62% and 17% of bigeye and yellowfin, respectively. Surface-association behaviour was not generally estimated just prior to recapture, being either non-existent or shorter than two days for 85% of bigeye and 74% of yellowfin. Current management measures in purse-seine tuna fisheries involve periodic or spatial closures for FAD use. If the chief benefit to purse-seine fishers of surface-association around floating objects is in locating schools in horizontal space at short-term time-scales, rather than holding fish near the surface for extended periods, controlling the number of sets made on FADs

Revisiting the vulnerability of juvenile bigeye (Thunnus obesus and yellowfin (T. albacares tuna caught by purse-seine fisheries while associating with surface waters and floating objects.

Directory of Open Access Journals (Sweden)

Joe Scutt Phillips

Full Text Available Tuna fisheries catch over three million tonnes of skipjack tuna (Katsuwonus pelamis each year, the majority of which come from purse-seine vessels targeting fish associated with man-made fish aggregating devices (FADs. A significant challenge for fisheries management is to maximize the efficiency of skipjack tuna catches whilst minimizing the bycatch of small and immature bigeye (Thunnus obesus and yellowfin (T. albacares tuna, for which long-term sustainability is uncertain in 75% of the world's stocks. To better manage the issues common with this fishing method, an improved understanding of tuna behaviour around FADs is necessary. We probabilistically classified the vertical behavioural patterns of 50 bigeye and 35 yellowfin tuna (mean fork length 72cm and 70cm, respectively electronically tagged throughout the western and central Pacific Ocean into shallow and deep states, using a state-space modelling approach. The occurrence of surface-association behaviours, defined as an individual remaining in a shallow state for 24-hours, was examined in relation to known capture events and FAD density. In general, surface-association events for both species were short and lasted on average less than three days, although events as long as 28 days were observed, and were more common in yellowfin when in archipelagic waters. Events were longest immediately following tagging in 62% and 17% of bigeye and yellowfin, respectively. Surface-association behaviour was not generally estimated just prior to recapture, being either non-existent or shorter than two days for 85% of bigeye and 74% of yellowfin. Current management measures in purse-seine tuna fisheries involve periodic or spatial closures for FAD use. If the chief benefit to purse-seine fishers of surface-association around floating objects is in locating schools in horizontal space at short-term time-scales, rather than holding fish near the surface for extended periods, controlling the number of sets

Brain morphology and immunohistochemical localization of the gonadotropin-releasing hormone in the bluefin tuna, Thunnus thynnus

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G Palmieri

2009-08-01

Full Text Available The present study was focused on the morphology of the diencephalic nuclei (likely involved in reproductive functions as well as on the distribution of GnRH (gonadotropin-releasing hormone in the rhinencephalon, telencephalon and the diencephalon of the brain of bluefin tuna (Thunnus thynnus by means of immunohistochemistry. Bluefin tuna has an encephalization quotient (QE similar to that of other large pelagic fish. Its brain exhibits well-developed optic tecta and corpus cerebelli. The diencephalic neuron cell bodies involved in reproductive functions are grouped in two main nuclei: the nucleus preopticus-periventricularis and the nucleus lateralis tuberis. The nucleus preopticus-periventricularis consists of the nucleus periventricularis and the nucleus preopticus consisting of a few sparse multipolar neurons in the rostral part and numerous cells closely packed and arranged in several layers in its aboral part. The nucleus lateralis tuberis is located in the ventral-lateral area of the diencephalon and is made up of a number of large multipolar neurones. Four different polyclonal primary antibodies against salmon (sGnRH, chicken (cGnRH-II (cGnRH-II 675, cGnRH-II 6 and sea bream (sbGnRH were employed in the immunohistochemical experiments. No immunoreactive structures were found with anti sbGnRH serum. sGnRH and cGnRH-II antisera revealed immunoreactivity in the perikarya of the olfactory bulbs, preopticus-periventricular nucleus, oculomotor nucleus and midbrain tegmentum. The nucleus lateralis tuberis showed immunostaining only with anti-sGnRH serum. Nerve fibres immunoreactive to cGnRH and sGnRH sera were found in the olfactory bulbs, olfactory nerve and neurohypophysis. The significance of the distribution of the GnRHimmunoreactive neuronal structures is discussed.

OPTIMASI JUMLAH RUMPON, UNIT ARMADA DAN MUSIM PENANGKAPAN PERIKANAN TUNA DI PERAIRAN PRIGI, JAWA TIMUR

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Erfind Nurdin

2016-05-01

Full Text Available Sebagai alat bantu penangkapan ikan, rumpon berfungsi untuk menarik kelompok ikan agar berkumpul di sekitarnya. Dalam jangka pendek rumpon dapat meningkatkan produksi hasil tangkapan, efisiensi dan efektivitas operasi penangkapan ikan. Namun rumpon juga dapat berdampak negatif terhadap keberlajutan stok sumberdaya. Penelitian ini dilakukan di PPN Prigi, Jawa Timur, dengan tujuan untuk mengkaji status pemanfaatan perikanan tuna, optimasi jumlah unit armada dan rumpon serta musim penangkapan ikan.  Beberapa analisis yang digunakan antara lain linear goal programming (LGP, fishing power indeks (FPI, catch per unit of effort (CPUE, maximum sustainable yield (MSY, dan untuk mengetahui pola musim tangkap menggunakan Metode Persentase Rata-rata. Hasil penelitian menunjukkan terdapat indikasi pemanfaatan perikanan tuna yang berlebih pada tingkat pengupayaan yang melampaui batas maksimum (MSY = 2334,9 ton/tahun.  Jumlah optimum untuk armada jaring insang sebanyak 43 unit, pancing tonda 63 unit dan rumpon 33 unit pada luasan area penelitian 8.940 km². Musim tangkap berlangsung pada Bulan Juni sampai Desember dengan puncak musim di bulan Juli.    Fish Aggregating Device (FADs has a function to attract and aggregate fish schooling. In short term, the advantage of FADs used is to increase the efficiency and effectiveness of fishing operations and the fish caught by the fishers; however FADs might also result a negative impact on the sustainability of fish stock.This study was conducted in fishing area of Prigi National Fishing Port, East Java. The objective of this study is to investigate the tuna fisheries status, optimization number of fishing units and number of FADs. Some analysis methods applied in this study were linear goal programming (LGP, fishing power index (FPI, catch per unit of effort (CPUE, maximum sustainable yield (MSY, and analysis of fishing season using the Average Percentage Methods. The results showed that the tuna fisheries in

CULTURAL MEMORY OF VICTORY OF LAS TUNAS CITY' LODGES FROM 1930 TO 1945 / MEMORIA CULTURAL DE LAS LOGIAS DE VICTORIA DE LAS TUNAS 1930-1945

OpenAIRE

Milena Medina Pérez

2012-01-01

The cultural memory of the lodges of Victoria de Las Tunas (1930-1945), it constitutes the topic of the present investigation. The thematic of the lodges has been approached for studious and investigating, not alone of the town but of several parts of the world. Still when these studies exist, the related with the cultural memory of the lodges of the territory, is in the pages of the documents of the time that which leaves to the light starting from this investigation, to show yesterday's Tun...

The Southern Oscillation, Hypoxia, and the Eastern Pacific Tuna Fishery

Science.gov (United States)

Webster, D.; Kiefer, D.; Lam, C. H.; Harrison, D. P.; Armstrong, E. M.; Hinton, M.; Luo, L.

2012-12-01

The Eastern Pacific tuna fishery, which is one of the world's major fisheries, covers thousands of square kilometers. The vessels of this fishery are registered in more than 30 nations and largely target bigeye (Thunnus obesus), skipjack (Katsuwonus pelamis), and yellowfin (T. albacores) tuna. In both the Pelagic Habitat Analysis Module project, which is sponsored by NASA, and the Fishscape project, which is sponsored by NSF, we have attempted to define the habitat of the three species by matching a 50 year time series on fish catch and effort with oceanographic information obtained from satellite imagery and from a global circulation model. The fishery time series, which was provided by the Inter-American Tropical Tuna Commission, provided spatial maps of catch and effort at monthly time steps; the satellite imagery of the region consisted of sea surface temperature, chlorophyll, and height from GHRSST, SEAWiFS, and AVISO products, and the modeled flow field at selected depths was output from ECCO-92 simulations from 1992 to present. All information was integrated and analyzed within the EASy marine geographic information system. This GIS will also provides a home for the Fishscape spatial simulation model of the coupled dynamics of the ocean, fish, fleets, and markets. This model will then be applied to an assessment of the potential ecological and economic impacts of climate change, technological advances in fleet operations, and increases in fuel costs. We have determined by application of EOF analysis that the ECCO-2 simulation of sea surface height fits well with that of AVISO imagery; thus, if driven properly by predictions of future air-sea exchange, the model should provide good estimates of circulation patterns. We have also found that strong El Nino events lead to strong recruitment of all three species and strong La Nina events lead to weak recruitment. Finally, we have found that the general spatial distribution of the Eastern Pacific fishing grounds

First data on growth and nucleic acid and protein content of field-captured Mediterranean bluefin (Thunnus thynnus and albacore (Thunnus alalunga tuna larvae: a comparative study

Directory of Open Access Journals (Sweden)

Alberto García

2006-10-01

Full Text Available The waters surrounding the Balearic archipelago are considered to be prime spawning habitats of the bluefin tuna (Thunnus thynnus and other tuna species such as albacore (T. alalunga in the Mediterranean. During the 2003 bluefin and albacore spawning season, a tuna larval survey (TUNIBAL 0703 was carried out to assess the distribution of bluefin larvae in relation to hydrographic mesoscale features. Tuna larvae were collected by means of surface plankton tows with a bongo gear with a quadrangular mouth measuring 1 m diagonally. The otolith microstructure of 157 and 71 field-captured larvae of Mediterranean bluefin and albacore, respectively, were analyzed to estimate the daily growth pattern. Furthermore, biochemical analysis to estimate DNA, RNA and protein content was done on another batch of 114 bluefin and 132 albacore larvae. The size range included pre-flexion to post-flexion larvae, from 2.8 to 8.6 mm in body length. bluefin and albacore larvae grew linearly in standard length (0.35 and 0.33 mm/day, respectively and potentially with respect to dry weight. No significant differences between species were observed in the size-weight relationship, or in the allometric relationship of body size and weight to otolith radius. However, the relationship of DNA and RNA to body size and weight showed a significant difference between species. Bluefin tuna larvae showed a greater nucleic acid content than albacore larvae. Protein content showed no significant differences with respect to body length.

Biogenic amine content, histamine-forming bacteria, and adulteration of pork in tuna sausage products.

Science.gov (United States)

Kung, Hsien-Feng; Tsai, Yung-Hsiang; Chang, Shih-Chih; Hong, Tang-Yao

2012-10-01

Twenty-five tuna sausage products were purchased from retail markets in Taiwan. The rates of occurrence of biogenic amines, histamine-forming bacteria, and adulteration by pork and poultry were determined. The average content of various biogenic amines in all tested samples was less than 2.0 mg/100 g (Makaira nigricans (blue marlin).

78 FR 2273 - Canned Tuna Deviating From Identity Standard; Temporary Permit for Market Testing

Science.gov (United States)

2013-01-10

... introduces or causes the introduction of one or more of the test products into interstate commerce, but not... permit covers limited interstate marketing tests of products identified as ``no drain canned tuna... permit provides for the temporary marketing of a total 533,333 cases of 12 x 4 ounce cans (totaling 6.4...

Improving the safety and quality of raw tuna fillets by x-ray irradiation

Science.gov (United States)

In this study, raw tuna fillet (25 g) samples were inoculated by immersing in 0.1% peptone water that contained 108-9 CFU ml-1 of a three-strain mixture of Salmonella enterica for 1 min. The samples were then air dried at 22 oC for 30 min and were packaged separately in sterilized bags prior to X-ra...

A reconstructed database of historic bluefin tuna captures in the Gibraltar Strait and Western Mediterranean

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Josué M. Polanco-Martínez

2018-02-01

Full Text Available This data paper presents a reconstruction of a compilation of a small but consistent database of historical capture records of bluefin tuna (Thunnus thynnus; BFT hereafter from the Gibraltar Strait and Western Mediterranean (Portugal, Spain and Italy. The compilation come from diverse historical and documentary sources and span the time interval from 1525 to 1936 covering a period of 412 years. There is a total of 3074 datum, which reach up to 67.83% of the total implying a 32.17% of missing data. However, we have only reconstructed the captures for the time interval 1700–1936 and we provide these reconstructions only for this time interval and for 9 out of 11 series due to the scarcity and inhomogeneity of the two oldest capture time series. This reconstructed database provides an invaluable opportunity for fisheries and marine research as well as for multidisciplinary research in climate change. Keywords: Data reconstructions, DINEOF, Missing data, Historic Bluefin tuna captures, Gibraltar Strait and Western Mediterranean

U-Pb age constraints for the La Tuna Granite and Montevideo Formation (Paleoproterozoic, Uruguay): Unravelling the structure of the Río de la Plata Craton

Science.gov (United States)

Pamoukaghlián, Karina; Gaucher, Claudio; Frei, Robert; Poiré, Daniel G.; Chemale, Farid; Frei, Dirk; Will, Thomas M.

2017-11-01

The Río de la Plata Craton is a continental block that crops out in Uruguay, eastern Argentina, southernmost Brazil and Paraguay. It comprises in Uruguay the Piedra Alta, Tandilia and Nico Pérez terranes, separated by the Colonia and the Sarandí del Yí megashears. The La Tuna Granite, which intrudes the Araminda metasandstones in the Tandilia Terrane, was considered Cambrian in age and the intruded sandstones were assigned to the Neoproterozoic Piedras de Afilar Formation. We show that the granite is Paleoproterozoic in age and that the host metasandstones do not belong to the Piedras de Afilar Formation, but to the Paleoproterozoic Montevideo Formation. U-Pb LA ICP-MS of zircon ages for the La Tuna Granite yielded a concordant crystallization age of 2156 ± 26 Ma. Furthermore a metamorphic event at 2010 ± 9 Ma is revealed by Pb stepwise leaching dating of monazites. U-Pb detrital zircon ages of the host Araminda metasandstone yield an upper intercept discordia age of 2152 ± 29 Ma, which marks the intrusion of the La Tuna pluton, and which is in accordance with the zircon U-Pb LA ICP MS constraints. A concordant U-Pb detrital zircon age of 2465 ± 40 Ma provides a maximum depositional age constraint for the metapsammites. Comparing quartz arenites of the Ediacaran Piedras de Afilar Formation with the Araminda metaquartzites, we conclude that they are very similar regarding petrology but they differ in age and metamorphic overprint. Detrital zircons in quartz arenites of the Piedras de Afilar Formation show youngest ages of 1.0 Ga. On the other hand, detrital zircons recovered from the Araminda metasandstones and the age of the intruding granite allow interpreting a depositional age between 2465 and 2150 Ma. Nd model ages show crustal residence times in average more than 200 myr older for the Tandilia Terrane both in Uruguay and Argentina, with a significant Neoarchean component, which is lacking in the Piedra Alta Terrane. Whereas the Piedra Alta Terrane was

Optimisation of the microencapsulation of tuna oil in gelatin-sodium hexametaphosphate using complex coacervation.

Science.gov (United States)

Wang, Bo; Adhikari, Benu; Barrow, Colin J

2014-09-01

The microencapsulation of tuna oil in gelatin-sodium hexametaphosphate (SHMP) using complex coacervation was optimised for the stabilisation of omega-3 oils, for use as a functional food ingredient. Firstly, oil stability was optimised by comparing the accelerated stability of tuna oil in the presence of various commercial antioxidants, using a Rancimat™. Then zeta-potential (mV), turbidity and coacervate yield (%) were measured and optimised for complex coacervation. The highest yield of complex coacervate was obtained at pH 4.7 and at a gelatin to SHMP ratio of 15:1. Multi-core microcapsules were formed when the mixed microencapsulation system was cooled to 5 °C at a rate of 12 °C/h. Crosslinking with transglutaminase followed by freeze drying resulted in a dried powder with an encapsulation efficiency of 99.82% and a payload of 52.56%. Some 98.56% of the oil was successfully microencapsulated and accelerated stability using a Rancimat™ showed stability more than double that of non-encapsulated oil. Copyright © 2014 Elsevier Ltd. All rights reserved.

The Tunas Formation (Permian) in the Sierras Australes foldbelt, east central Argentina: evidence for syntectonic sedimentation in a foreland basin

Science.gov (United States)

Lopez-Gamundi, O. R.; Conaghan, P. J.; Rossello, E. A.; Cobbold, P. R.

1995-04-01

The Tunas Formation, extensively exposed in the Sierras Australes foldbelt of eastern central Argentina, completes the sedimentation of the Gondwanan (Late Carboniferous-Permian) sequence, locally known as the Pillahuincó Group. The underlying units of the Group show an integrated depositional history which can be explained in terms of glaciomarine sedimentation (Sauce Grande Formation) and postglacial transgression (Piedra Azul and Bonete Formations). This succession also has a rather uniform quartz-rich, sand-sized composition indicative of a cratonic provenance from the Tandilia Massif to the northeast. Early to Late Permian deformation folded and thrusted the southwestern basin margin (Sierras Australes) and triggered the deposition of a 1,500 m — thick, synorogenic prograding wedge, the Tunas Formation, in the adjacent foreland basin (Sauce Grande or Claromecó Basin). Sandstone detrital modes for the Tunas deposits show moderate to low contents of quartz and abundant lithics, mostly of volcanic and metasedimentary origin. Paleocurrents are consistently from the SW. Tuffs interbedded with sandstones in the upper half of Tunas Formation (Early — early Late? Permian) are interpreted as being derived from volcanic glass-rich tuffs settled in a body of water. Extensive rhyolitic ignimbrites and consanguineous airborne tuffaceous material erupted in the northern Patagonian region during that period. The age constraints and similarities in composition between these volcanics and the tuffaceous horizons present in the Sauce Grande, Parana and Karoo Basins suggest a genetic linkage between these two episodes. The intimate relationship between volcanic activity inboard of the paleo-Pacific margin, deformation in the adjacent orogenic belt and subsidence and sedimentation in the contiguous foreland basin constitutes a common motif in the Sauce Grande and Karoo Basins of southwestern Gondwana.

Evaluation of three harvest control rules for Bigeye Tuna ( Thunnus obesus) fisheries in the Indian Ocean

Science.gov (United States)

Tong, Yuhe; Chen, Xinjun; Kolody, Dale

2014-10-01

The stock of Bigeye tuna ( Thunnus obesus) in the Indian Ocean supports an important international fishery and is considered to be fully exploited. The responsible management agency, the Indian Ocean Tuna Commission (IOTC), does not have an explicit management decision-making framework in place to prevent over-fishing. In this study, we evaluated three harvest control rules, i) constant fishing mortality (CF), from 0.2 to 0.6, ii) constant catch (CC), from 60000 to 140000 t, and iii) constant escapement (CE), from 0.3 to 0.7. The population dynamics simulated by the operating model was based on the most recent stock assessment using Stock Synthesis version III (SS3). Three simulation scenarios (low, medium and high productivity) were designed to cover possible uncertainty in the stock assessment and biological parameters. Performances of three harvest control rules were compared on the basis of three management objectives (over 3, 10 and 25 years): i) the probability of maintaining spawning stock biomass above a level that can sustain maximum sustainable yield (MSY) on average, ii) the probability of achieving average catches between 0.8 MSY and 1.0 MSY, and iii) inter-annual variability in catches. The constant escapement strategy ( CE=0.5), constant fishing mortality strategy ( F=0.4) and constant catch ( CC=80000) were the most rational among the respective management scenarios. It is concluded that the short-term annual catch is suggested at 80000 t, and the potential total allowable catch for a stable yield could be set at 120000 t once the stock had recovered successfully. All the strategies considered in this study to achieve a `tolerable' balance between resource conservation and utilization have been based around the management objectives of the IOTC.

IMPACT OF CLIMATE ANOMALY ON CATCH COMPOSITION OF NERITIC TUNA IN SUNDA STRAIT

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Khairul Amri

2013-12-01

Full Text Available Tongkol komo/kawakawa (Euthynnus affinis and tenggiri (Scomberomerus guttatus are commonly caught by mini purseiners operated in Sunda Straits and landed in Labuan, West Java. This species inhabits coastal water and has preference staying in relatively warm water. Oceanography parameters commonly influencing the distribution of Euthynnus affinis are temperature, current, and salinity. The oceanography of Sunda Strait is influenced by water masses coming from the north that mainly originated from the Java Sea and water masses from the south mainly originated from Indian Ocean. The internal oceanography of Sunda Strait is also influenced by upwelling and monsoon as regional climate anomaly (ENSO and Indian Ocean Dipole Mode. This paper describes the influence of Dipole Mode (positive and negative event and ENSO (El- Nino/La-Nina to the catch dynamics of neritic tuna particularly in Sunda Straits waters. The results shown that regional climate anomaly influenced neritic tuna catch and its composition. The catches Euthynnus affinis in phase negative dipole mode or La-Nina were higher and dominated the catch composition of pelagic fishes of Sunda Strait. Similar situation also is showen by Scomberomorus commerson.

Accounting for age uncertainty in growth modeling, the case study of yellowfin tuna (Thunnus albacares of the Indian Ocean.

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Emmanuelle Dortel

Full Text Available Age estimates, typically determined by counting periodic growth increments in calcified structures of vertebrates, are the basis of population dynamics models used for managing exploited or threatened species. In fisheries research, the use of otolith growth rings as an indicator of fish age has increased considerably in recent decades. However, otolith readings include various sources of uncertainty. Current ageing methods, which converts an average count of rings into age, only provide periodic age estimates in which the range of uncertainty is fully ignored. In this study, we describe a hierarchical model for estimating individual ages from repeated otolith readings. The model was developed within a Bayesian framework to explicitly represent the sources of uncertainty associated with age estimation, to allow for individual variations and to include knowledge on parameters from expertise. The performance of the proposed model was examined through simulations, and then it was coupled to a two-stanza somatic growth model to evaluate the impact of the age estimation method on the age composition of commercial fisheries catches. We illustrate our approach using the sagittal otoliths of yellowfin tuna of the Indian Ocean collected through large-scale mark-recapture experiments. The simulation performance suggested that the ageing error model was able to estimate the ageing biases and provide accurate age estimates, regardless of the age of the fish. Coupled with the growth model, this approach appeared suitable for modeling the growth of Indian Ocean yellowfin and is consistent with findings of previous studies. The simulations showed that the choice of the ageing method can strongly affect growth estimates with subsequent implications for age-structured data used as inputs for population models. Finally, our modeling approach revealed particularly useful to reflect uncertainty around age estimates into the process of growth estimation and it can

Closing the Incentive Gap: The Role of Public and Private Actors in Governing Indonesia's Tuna Fisheries

NARCIS (Netherlands)

Bailey, M.L.; Miller, A.M.M.; Bush, S.R.; Zwieten, van P.A.M.; Wiryawan, B.

2016-01-01

Indonesia is one of the world's largest tuna producing countries, yet regulatory oversight remains weak and management is poor. Incentive-based approaches are a way to improve state-based resource management, but they often require strong government regulation. In this paper, we use principal–agent

The development of the northern European fishery for north Atlantic bluefin tuna Thunnus thynnus during 1900-1950

DEFF Research Database (Denmark)

MacKenzie, Brian; Myers, R.A.

2007-01-01

North Atlantic bluefin tuna, Thunnus thynnus, used to migrate to northern European waters (Norwegian Sea, North Sea, Skagerrak, Kattegat, and Øresund) where it supported important commercial and sportfisheries. The species disappeared from the region in the early 1960s and the species is now still...... increasing. The species was frequently sighted while fishermen were targeting other species (herring, mackerel) and occasionally was caught as bycatch with these and other species. Information from scientifically trained observers demonstrate that tuna schools were common in the North Sea for 2–3 months...... during the summers of 1923–1931. As fishermen realized that the species had market value, new catch methods were developed and employed. These included harpoon-rifle, improved hook and line methods, and hydraulically operated purse seines. Landings rose sharply as did the number of vessels...

Kinetics of heat-induced color change of a tuna-vegetable mixture

OpenAIRE

Scherer, Erika; Sandoval, Aleida J; Barreiro, José A

2009-01-01

Heat induced color change kinetics in a tuna-vegetable mixture was evaluated by measuring color parameter "L" (Hunter-Lab) and 5-hydroxi-methyl-furfural (5-HMF) accumulation. For this purpose small reusable stainless steel TDT cans were used and the kinetic studies performed in a temperature range characteristic of thermal processing of low acid canned foods (110-125°C). The color parameter L was better described by a pseudo zero order while a pseudo first order reaction was found for 5-HMF a...

Preliminary approach on early post mortem stress and quality indexes changes in large size bluefin tuna (Thunnus thynnus

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R. Ugolini

2010-01-01

Full Text Available Bluefin tuna (Thunnus thynnus is very appreciated on Japan and USA market for the preparation of sushi and sahimi. The market price of the fresh product can vary from 8 to 33 Euro/kg (gate farm/producers prices according to size, shape, fat level, meat colour, consistency and freshness (absence of “hyake”, all parameters strictly connected to feeding quality and quantity, rearing and killing stress factors and refrigeration times and conditions after death. Excessive levels of stress during the slaughtering can affect meat quality, contributing to significantly decrease of tuna’s price. The present trial was carried out to evaluate the possible harvesting/slaughtering stress effect on reared bluefin tuna meat quality, starting from the examination of the most important stress and quality parameters changes during the early post mortem period.

EMBRYO DEVELOPMENT OF YELLOWFIN TUNA (Thunnus albacares AT DIFFERENT INCUBATION TEMPERATURE

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Jhon Harianto Hutapea

2007-12-01

Full Text Available The experiment was conducted in order to figure out the effect of incubation temperature on embryonic development of yellowfin tuna, Thunnus albacares eggs. Five different incubation temperatures were applied as treatments, i.e.: 24°C, 26°C, 28°C, 30°C, and 32°C with 3 replicate each. Ten micro plates with lid (IWAKI, Japan were used; each has 6 well and 10 mL volumes. Five micro plates were used for experiment and five for balance on shaker. Three well of each micro plate were filled with 8 mL ultra violet sterilized sea water and 50 fertilized eggs. Temperature was set using Multi Thermo Incubator which has 5 level racks. Temperatures were set from the lowest to the highest on bottom to upper rack order. To maintain eggs dispersed in the medium, shaker on each rack was operated at 150 RPM. The embryo was monitored every 30-60 minutes depends on embryonic stage development using Microscope which was connected to Digital Camera DXM 1200F. Image analyses by Image Analyzer Program. The results showed, incubation temperature was significantly affect (P<0.05 embryonic development and hatching time of yellowfin tuna (Thunnus albacares eggs. Optimum incubation temperature for embryo development and hatching was 28°C. Decreased on incubation temperature slows down embryo development at all stages, and vice versa, increased on incubation temperature accelerates embryo development.

Rasgos epidemiológicos de ciegos y débiles visuales por retinosis pigmentaria en la provincia Las Tunas Epidemiologic traits of the blind and visually handicapped due to retinitis pigmantosa in the province of Las Tunas

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Luisa González Hess

2003-06-01

Full Text Available Se estudiaron 325 pacientes con el diagnóstico retinosis pigmentaria en la provincia Las Tunas. De ellos, se encontró que el 24,9 y el 10 % eran ciegos y débiles visuales respectivamente, donde se obtuvo una tasa de ciegos por retinosis pigmentaria de 1,45 x 10 000 habitantes y de débiles visuales de 0,6 x 10 000 habitantes. El tipo de herencia que predominó en ambos grupos fue la autosómica recesiva.325 patients with the diagnosis of retinitis pigmentosa were studied in the province of Las Tunas. Of them, it was found that 24.9 % and 10 % were blind and visually handicapped, respectively. A rate of blind patients caused by retinitis pigmentosa of 1.45 x 10 000 inhabitants and of visually handicapped of 0.6 x 10 000 inhabitants was obtained. The type of inheritance predominating in both groups was the autosomal recessive inheritance.

A cascade of warming impacts brings bluefin tuna to Greenland waters

DEFF Research Database (Denmark)

MacKenzie, Brian; Payne, Mark; Boje, Jesper

Rising ocean temperatures are causing marine fish species to shift spatial distributions and ranges, and are altering predator-prey dynamics in food-webs. Most documented cases of species shifts so far involve relatively small species at lower trophic levels, and consider individual species...... since 1985, when temperatures began to rise. The presence of bluefin tuna in this region is likely due to a combination of warm temperatures that are physiologically more tolerable and immigration of an important prey species into the region. We conclude that a cascade of climate change impacts...

Fisher-Level Decision Making to Participate in Fisheries Improvement Projects (FIPs) for Yellowfin Tuna in the Philippines

NARCIS (Netherlands)

Tolentino-Zondervan, F.; Berentsen, P.B.M.; Bush, S.R.; Oude Lansink, A.G.J.M.

2016-01-01

This study identifies the capabilities needed by small-scale fishers to participate in Fishery Improvement Projects (FIPs) for yellowfin tuna in the Philippines. The current literature provides little empirical evidence on how different models, or types of FIPs, influence the participation of

Microbiological stability of canned tuna produced in Italy and in non-European countries

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Francesco Casalinuovo

2015-03-01

Full Text Available The results of a study on the microbiological stability of canned tuna produced by Italian companies and similar canned products manufactured in countries outside Europe are reported herein. The study involved 38 samples of canned tuna of various brands, of which 14 were produced by companies outside Europe and 24 by Italian companies. Qualitative and quantitative microbiological tests were conducted for the following parameters: bacterial colony counts at 30°C, total coliforms, total Enterobacteriaceae, sulphite-reducing anaerobes, Salmonella spp., Bacillus cereus, Escherichia coli, Staphylococcus aureus, yeasts and molds. Bacterial loads and mold contamination were respectivelyin found in 8/14 (57% samples from outside EU and 7/24 (29% Italian samples. The bacterial flora was represented by Gram-positive bacteria (Staphylococcus warneri, Staphylococcus lentus, Streptococcus mitis, Enterococcus faecalis, Leuconostoc mesenteroides, Gram-negative bacteria (Sphingomonas paucimobilis, Acinetobacter iwoffii, Rhizobium radiobacter, spore-forming bacteria (Bacillus vallismortis, while the fungal species was represented by Penicillium spp., Rhizopus spp., Rhodotorula spp. and Alternaria spp. Excluding anomalies in the thermal treatment process of products and any contamination after treatment, the contaminations encountered in both cases were most likely due to insufficient production quality standards and the quality of the raw material used. These results may require a redefinition of the concept of commercial stability as hitherto stated.

Physicochemical evaluation of the effects of irradiation and evisceration on the conservation of refrigerated blackfin tuna (Thunnus atlanticus)

Energy Technology Data Exchange (ETDEWEB)

Monteiro, Maria L.G.; Marsico, Eliane T. [Universidade Federal Fluminense (UFF), Niteroi, RJ (Brazil). Faculdade de Veterinaria. Dept. de Tecnologia de Alimentos], e-mail: marialuciaguerra@yahoo.com.br, e-mail: elianee@vm.uff.br; Vital, Helio C. [Centro Tecnologico do Exercito (CTEx), Rio de Janeiro, RJ (Brazil). Secao de Defesa Nuclear], e-mail: vital@ctex.eb.br

2009-07-01

Tuna is among the most traded fishes in Brazil, however efficiently delaying its fast deterioration is still a major practical challenge. Irradiation has been proposed as a safe and powerful alternative tool for conservation of seafood. This work investigated the effects of irradiation on the physicochemical quality of refrigerated blackfin tuna (Thunnus atlanticus). Analyses of pH, total volatile bases (TVB-N), ammonia and biogenic amines (histamine, cadaverine and putrescine) were performed in order to determine the degree of conservation. The samples were subjected to four different treatments aiming at evaluating the efficiency of irradiation, evisceration and both combined. The figures measured for those parameters, all of them related to the degree of conservation, were found to increase with time regardless of the treatment. In addition, data for irradiated samples remained consistently lower than for unirradiated ones, indicating a better level of preservation that led to an extended shelf life of 14 days. In contrast, excessive levels of those indicators of degradation were found in unirradiated samples after 7 to 10 days of storage. In addition, some evidence was found that evisceration slightly increased quality, consequently promoting a small extension in shelf life of unirradiated samples. Finally, it can be concluded with basis on the results of the physicochemical parameters studied that treatment of fresh refrigerated blackfin tuna by irradiation with 2.5 kGy efficiently preserved freshness and extended the shelf life of the product from 7 to 14 days. (author)

Physicochemical evaluation of the effects of irradiation and evisceration on the conservation of refrigerated blackfin tuna (Thunnus atlanticus)

International Nuclear Information System (INIS)

Monteiro, Maria L.G.; Marsico, Eliane T.; Vital, Helio C.

2009-01-01

Tuna is among the most traded fishes in Brazil, however efficiently delaying its fast deterioration is still a major practical challenge. Irradiation has been proposed as a safe and powerful alternative tool for conservation of seafood. This work investigated the effects of irradiation on the physicochemical quality of refrigerated blackfin tuna (Thunnus atlanticus). Analyses of pH, total volatile bases (TVB-N), ammonia and biogenic amines (histamine, cadaverine and putrescine) were performed in order to determine the degree of conservation. The samples were subjected to four different treatments aiming at evaluating the efficiency of irradiation, evisceration and both combined. The figures measured for those parameters, all of them related to the degree of conservation, were found to increase with time regardless of the treatment. In addition, data for irradiated samples remained consistently lower than for unirradiated ones, indicating a better level of preservation that led to an extended shelf life of 14 days. In contrast, excessive levels of those indicators of degradation were found in unirradiated samples after 7 to 10 days of storage. In addition, some evidence was found that evisceration slightly increased quality, consequently promoting a small extension in shelf life of unirradiated samples. Finally, it can be concluded with basis on the results of the physicochemical parameters studied that treatment of fresh refrigerated blackfin tuna by irradiation with 2.5 kGy efficiently preserved freshness and extended the shelf life of the product from 7 to 14 days. (author)

Patterns of variations in large pelagic fish: A comparative approach between the Indian and the Atlantic Oceans

Science.gov (United States)

Corbineau, A.; Rouyer, T.; Fromentin, J.-M.; Cazelles, B.; Fonteneau, A.; Ménard, F.

2010-07-01

Catch data of large pelagic fish such as tuna, swordfish and billfish are highly variable ranging from short to long term. Based on fisheries data, these time series are noisy and reflect mixed information on exploitation (targeting, strategy, fishing power), population dynamics (recruitment, growth, mortality, migration, etc.), and environmental forcing (local conditions or dominant climate patterns). In this work, we investigated patterns of variation of large pelagic fish (i.e. yellowfin tuna, bigeye tuna, swordfish and blue marlin) in Japanese longliners catch data from 1960 to 2004. We performed wavelet analyses on the yearly time series of each fish species in each biogeographic province of the tropical Indian and Atlantic Oceans. In addition, we carried out cross-wavelet analyses between these biological time series and a large-scale climatic index, i.e. the Southern Oscillation Index (SOI). Results showed that the biogeographic province was the most important factor structuring the patterns of variability of Japanese catch time series. Relationships between the SOI and the fish catches in the Indian and Atlantic Oceans also pointed out the role of climatic variability for structuring patterns of variation of catch time series. This work finally confirmed that Japanese longline CPUE data poorly reflect the underlying population dynamics of tunas.

Global pollution monitoring of polychlorinated dibenzo-p-dioxins (PCDDs), furans (PCDFs) and coplanar polychlorinated biphenyls (coplanar PCBs) using skipjack tuna as bioindicator

Energy Technology Data Exchange (ETDEWEB)

Ueno, D.; Watanabe, M.; Subraminian, A.N.; Tanabe, S. [Ehime Univ. (Japan); Tanaka, H. [National Research Inst. of Fisheries and Environment of Inland Sea (Japan); Fillmann, G. [Fundacao Univ. Federal do Rio Grande (Brazil); Lam, P.K.S.; Zheng, G.J. [City Univ. of Hong Kong (Hong Kong); Muchtar, M.; Razak, H. [Indonesian Inst. of Sciences (Indonesia); Prudente, M. [De La Salle Univ. (Philippines); Chung, K. [Sungkyunkwan Univ. (Korea)

2004-09-15

Worldwide contamination by dioxins and related compounds, such as polychlorinated dibenzop- dioxins (PCDDs), polychlorinated dibenzofurans (PCDFs) and coplanar polychlorinated biphenyls (coplanar PCBs) representing persistent organic pollutants (POPs) have been of great concern due to their persistency in the environment, highly bioaccumulative nature and adverse effects on wildlife and humans. Several studies on air samples and marine organisms from open seas suggested a long range transport of these compounds through atomosphere. Although several investigators have monitored dioxins pollution in localized areas, information on the global distribution of dioxins which can explain their atomospheric transport, behavior and fate are still limited. Skipjack tuna is primarily distributed from offshore waters to open seas in tropical and temperate regions almost all over the world such as the Pacific, Atlantic and Indian Oceans6. This species is an important commercial fish and its ecology and biology has been well studied. Moreover, suitability of skipjack tuna for global monitoring of organic pollutants (DDTs, HCHs PBDEs, organotins, etc.) has been established in our previous report, indicating that migration pattern, growth stage and sex of these animals have no or little effect on the variations of POPs residue levels in their bodies. Hence this species reflected POPs pollution levels in seawater when and where they were collected, caused by the rapid equilibrium partitioning between seawater and body lipid. These facts made skipjack tuna a suitable bioindicator for monitoring the contamination status of dioxins and related compounds. The objectives of this study are to elucidate the global distribution of dioxins (PCDD/Fs and coplanar PCBs) in offshore waters and open seas, and to understand the transport and behaviour of these chemicals using skipjack tuna as bioindicator.

Karakteristik Ikan Tuna sirip biru selatan (Thunnus maccoyii Hasil Tangkapan Kapal Rawai Tuna yang didaratkan di Pelabuhan Benoa

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I Gede Adi Swastana

2016-07-01

Full Text Available Southern bluefin tuna (SBT is scientifically known Thunnus maccoyii, and just live in the southern hemisphere. SBT fish classified as the most exploited tuna fish in the southeastern part of the Indian Ocean, so it is protected by the International Union for the Conservation of Nature (IUCN. The aim of this study is too collected of SBT fish caught during January which is the peak of SBT landing in Benoa port. The study was conducted base on data sampling, observation and interviews on 33 ships were landing SBT fish during January 2016. Based on observations from 33 vessels, we found that the total of SBT fish that landed in Benoa port during January 2016 is 251 fresh fish and 366 frozen fish. However just 251 SBT fresh fish were sampled, and the result indicated the fresh SBT fish is dominated by weigh between 61-70 kg with number 61 fish with a total weight of 19.28 tonne. The SBT were caught dominated by fish that has FL (fork lenght ranging between 151-160 cm with number 69 fish. While the smallest SBT range between 131-140 cm with the number of 5 fish. These results indicate that SBT fish caught in the Souetheast Indian Ocean during January 2016 is generaly relative small fish (130–160 cm FL with a number of 163 fish and mature SBT fish (FL > 162 cm with a number of 88 and young SBT (FL < 130 cm with a number of 5 fish. Based on morphometric analysis, eyeball diameter of SBT range 6-8 cm, the length lateral head from the tip of the mouth to behind the gill cover ranging 46-54 cm, the length of body from the early dorsal or in front of the first dorsal fin ranging between 38-47 cm, the height of fish at the end of the anal or at the end ranging between 34-39 cm, the high of caudal peduncle ranging between 4-5 cm, th length of the dorsal base of the tail fish ranging between 53-63 cm, and the length of the base of tail anal from anal to tail ranging between 41-51 cm. Base on size and age composition, it is shown that the growth of SBT

Karakteristik Ikan Tuna sirip biru selatan (Thunnus maccoyii Hasil Tangkapan Kapal Rawai Tuna yang didaratkan di Pelabuhan Benoa

Directory of Open Access Journals (Sweden)

I Gede Adi Swastana

2016-12-01

Full Text Available Southern bluefin tuna (SBT is scientifically known Thunnus maccoyii, and just live in the southern hemisphere. SBT fish classified as the most exploited tuna fish in the southeastern part of the Indian Ocean, so it is protected by the International Union for the Conservation of Nature (IUCN. The aim of this study is too collected of SBT fish caught during January which is the peak of SBT landing in Benoa port. The study was conducted base on data sampling, observation and interviews on 33 ships were landing SBT fish during January 2016. Based on observations from 33 vessels, we found that the total of SBT fish that landed in Benoa port during January 2016 is 251 fresh fish and 366 frozen fish. However just 251 SBT fresh fish were sampled, and the result indicated the fresh SBT fish is dominated by weigh between 61-70 kg with number 61 fish with a total weight of 19.28 tonne. The SBT were caught dominated by fish that has FL (fork lenght ranging between 151-160 cm with number 69 fish. While the smallest SBT range between 131-140 cm with the number of 5 fish. These results indicate that SBT fish caught in the Souetheast Indian Ocean during January 2016 is generaly relative small fish (130–160 cm FL with a number of 163 fish and mature SBT fish (FL > 162 cm with a number of 88 and young SBT (FL < 130 cm with a number of 5 fish. Based on morphometric analysis, eyeball diameter of SBT range 6-8 cm, the length lateral head from the tip of the mouth to behind the gill cover ranging 46-54 cm, the length of body from the early dorsal or in front of the first dorsal fin ranging between 38-47 cm, the height of fish at the end of the anal or at the end ranging between 34-39 cm, the high of caudal peduncle ranging between 4-5 cm, th length of the dorsal base of the tail fish ranging between 53-63 cm, and the length of the base of tail anal from anal to tail ranging between 41-51 cm. Base on size and age composition, it is shown that the growth of SBT

Petrological and geochemical studies of alkaline rocks from continental Brazil. The tunas massif, state of Parana

International Nuclear Information System (INIS)

Gomes, C.B.; Barbieri, M.

1987-01-01

The Tunas massif, outcropping 80 km from the city of Curitiba, Parana State, southern Brazil, covers about 22 km 2 . It intruded into Precambrian metaigneous and metasedimentary units about 80 Ma ago (K/Ar and Rb/Sr data); five subcircular volcanic structures are recognized. Syenites and alkali syenites (plus some pulaskites) are the main rock-types, with subordinate alkali gabbros, syenogabbros, essexites and syenodiorites; small late syenitic dikes are also found. Magmatic breccias containing clasts of all rock-types are widespread. Main minerals are feldspars (both alkali feldspars and plagioclases, varying from bytownite to more sodic members), Ca-pyroxenes (Ti-salites grading towards ferrosalites and aegirine-augites), amphiboles (mainly pargasites, although kaersutites and katophorites are also present), Fe-biotites (sometimes enriched in Ti), olivines (hortonolites to ferrohortonolites), quartz and feldspathoids (both fresh and altered nephelines and sodalites); main accessories are Ti-magnetites (with exsolved ilmenite) and apatite. In the AFM diagram, whole rock chemistry depicts a typical alkaline trend. Binary variation diagrams (D.I. vs. several elements) show positive correlation for Si, Na and K, and negative slopes for Mg and Ca. The variation in the amounts of Ni, Cr and V with differentiation can be explained by withdrawal of olivine, Ca-pyroxenes and magnetite, and that of Sr and Ba by the fractionation of feldspars. The rocks are also relatively enriched in REE, a trend which is more pronounced for the light REE. Mass balance calculations show that the overall differentiation trend of the Tunas rocks can be explained by crystal fractionation, although several complexities arise and point to more complex genetic patterns. Isotopic Rb/Sr ratios are consistent with a mantle origin for the parental magma; dike rocks, however, with 87 Sr 86 Sr i = 0.70777 - 0.70806, were probably contaminated by crustal material. (author) [pt

Population structure and adaptation in fishes

DEFF Research Database (Denmark)

Limborg, Morten

Marine fishes represent a valuable resource for the global economy and food consumption. Accordingly, many species experience high levels of exploitation necessitating effective management plans. However, long term sustainability may be jeopardized from insufficient knowledge about intra-specific......Marine fishes represent a valuable resource for the global economy and food consumption. Accordingly, many species experience high levels of exploitation necessitating effective management plans. However, long term sustainability may be jeopardized from insufficient knowledge about intra......-specific population structure and adaptive divergence. The large population sizes and high migration rates common to most marine fishes impede the differentiating effect of genetic drift, having led to expectations of no population structure and that the occurrence of local adaptation should be rare in these species....... Comprehensive genetic analyses on the small pelagic fish European sprat (Sprattus sprattus) revealed significant population structure throughout its distribution with an overall pattern of reduced connectivity across environmental transition zones. Population structure reflected both historical separations over...

Banning is not enough: The complexities of oceanic shark management by tuna regional fisheries management organizations

Directory of Open Access Journals (Sweden)

Mariana Travassos Tolotti

2015-07-01

Full Text Available Recently, declining populations of several pelagic shark species have led to global conservation concerns surrounding this group. As a result, a series of species-specific banning measures have been implemented by Regional Fishery Management Organizations (RFMOs in charge of tuna fisheries, which include retention bans, finning bans and trading bans. There are both positive and negative aspects to most management measures, but generally, the positive aspects outweigh the negatives, ensuring the measure is beneficial to the resource and its users in the long term. Banning measures are a good first step towards the conservation of pelagic shark species, especially since they improve conservation awareness among fishers, managers and the public. Measures that impose total bans, however, can lead to negative impacts that may jeopardize the populations they were intended to protect. The majority of pelagic shark catches are incidental and most sharks die before they reach the vessel or after they are released. The legislation set out by RFMOs only prevents retention but not the actual capture or the mortality that may occur as a result. Managers should be fully aware that the development and implementation of mitigation measures are critical for a more effective conservation strategy.

Historia del Boxeo en la provincia de las Tunas hasta 1990

OpenAIRE

Etián Jiménez Espinosa; Guillermo Montero Quesada; Luís Fidel Velásquez Ortega

2009-01-01

La presente investigación hace un estudio sobre los antecedentes, génesis, evolución y desarrollo del boxeo en la provincia en Las Tunas, el cual se realiza a partir de una periodización hasta nuestros días. El estudio responde a una de las problemáticas más complejas y necesarias del territorio, que responde a la carencia de información bibliográfica para impartir con la calidad pertinente la asignatura Historia del Deporte, en todos sus ámbitos – internacional, nacional y local- y con un en...

Certification of total arsenic, dimethylarsinic acid and arsenobetaine contents in a tuna fish powder (BCR-CRM 627)

DEFF Research Database (Denmark)

Lagarde, F.; Amran, M. B.; Leroy, M. J. F.

1999-01-01

Tuna fishes were collected in the Straits of Messina (Italy), were dissected and dorsal muscles minced, freeze-dried, ground and sieved. The obtained powder was stabilised by gamma-irradiation and filled into brown glass bottles. The homogeneity and stability at +20 degrees C and +40 degrees C we...

Heavy metal content and molecular species identification in canned tuna: Insights into human food safety.

Science.gov (United States)

Pappalardo, Anna Maria; Copat, Chiara; Ferrito, Venera; Grasso, Alfina; Ferrante, Margherita

2017-05-01

Canned tuna in olive oil and in brine of the most popular brands sold in Italian markets were analyzed to verify the authentication of transformed products, with the aim to unveil commercial frauds due to the substitutions of high value species with species of low commercial value, and to assess the health risk of consumers related to cadmium (Cd), lead (Pb) and mercury (Hg) contents. Species authentication was evaluated with amplification of COI DNA barcode and confirmed the declared species. Among tested metals, Hg had the highest concentrations, followed by Cd and Pb. None of the tested samples surpassed the European regulatory limits no. 1881/2006 fixed for Hg and Pb, whereas one batch of canned tuna in olive oil exceeded standard for Cd. Risk for human health was evaluated by the metals daily intake and target hazard quotient (THQ). As a result, Cd and Pb did not exceed the toxicological reference values established by World Health Organization (WHO) and the Environmental Protection Agency (EPA). Conversely, Hg content suggests a consumption no more than once a week and a continuous surveillance of this fishery products for consumer protection.

Genetic variation in skipjack tuna Katsuwonus pelamis (L.) using PCR-RFLP analysis of the mitochondrial DNA D-loop region

Digital Repository Service at National Institute of Oceanography (India)

Menezes, M.R.; Ikeda, M.; Taniguchi, N.

Journal of Marine and Freshwater Research 34, 231–251. Sharp, G. D. & Pirages, S. W. (1978). The distribution of enzymes of red, white and heart muscle: distributional characteristics in selected scombrid fishes. In The Physiological Ecology of Tunas...

Assessment of health risk of exposure to mercury through intake under canned tuna in health registration process period January 2010-December 2011

International Nuclear Information System (INIS)

Carrillo, M.; Tovar, M.; Alvarez, J.; Arraez, M.; Hordziejewicz, I.; Loreto, I.

2013-01-01

The power point presentation is about: Assessing the health risk due to exposure to mercury through ingestion canned tuna under sanitary registration process in the country, using the risk assessment tool recommended by the Codex Alimentarius establishing safety according to the use of local diets. The analytical method appied was Atomic Absorption Spectrophotometry Amalgamation (SS TDA AS). As a recommendation was important to maintain an ongoing program of monitoring of mercury in tuna as being a highly recommended food as being excellent source of protein and fatty acids beneficial to health can also be a source of mercury poisoning in cases of people who have a high consumption thereof in the diet

Physicochemical and sensory characterization of refined and deodorized tuna (Thunnus albacares) by-product oil obtained by enzymatic hydrolysis.

Science.gov (United States)

de Oliveira, Dayse A S B; Minozzo, Marcelo G; Licodiedoff, Silvana; Waszczynskyj, Nina

2016-09-15

In this study, the effects of chemical refining and deodorization on fatty acid profiles and physicochemical and sensory characteristics of the tuna by-product oil obtained by enzymatic hydrolysis were evaluated. Enzymatic extraction was conducted for 120 min at 60 °C and pH 6.5 using Alcalase at an enzyme-substrate ratio of 1:200 w/w. The chemical refining of crude oil consisted of degumming, neutralization, washing, drying, bleaching, and deodorization; deodorization was conducted at different temperatures and processing times. Although chemical refining was successful, temperature and chemical reagents favored the removal of polyunsaturated fatty acids (PUFA) from the oil. Aroma attributes of fishy odor, frying odor, and rancid odor predominantly contributed to the sensory evaluation of the product. Deodorization conditions of 160 °C for 1h and 200 °C for 1h were recommended for the tuna by-product oil, which is rich in PUFA. Copyright © 2016 Elsevier Ltd. All rights reserved.

Incidencia prenatal de los defectos congénitos en Las Tunas

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Juana Lupe Muñoz Callol

2015-04-01

Full Text Available Los defectos congénitos son la principal causa de morbilidad y mortalidad neonatal en casi todo el mundo. La introducción del diagnóstico prenatal y el establecimiento de estrategias preventivas en la atención primaria de salud han logrado la disminución de la prevalencia al nacimiento de defectos congénitos y de la mortalidad infantil en nuestro país. Se realizó un estudio descriptivo de corte transversal de los casos diagnosticados o confirmados prenatalmente en la consulta de genética provincial, con el objetivo de describir la incidencia prenatal de los defectos congénitos en la provincia Las Tunas, durante el período de enero 2013 a mayo 2014. De un universo de 9462 embarazadas de la provincia, en el periodo de estudio; se escogió una muestra de 110 gestantes que presentaron defectos fetales en diferentes órganos y sistemas. La información se obtuvo del registro provincial, donde se analizaron las variables: comportamiento de defectos congénitos por áreas de salud, edad de las madres por defectos congénitos, defectos congénitos por programas prenatales y los defectos congénitos por sistemas. El mayor número de casos se diagnosticó en el segundo trimestre del embarazo, siendo el sistema cardiovascular donde se encontró un número mayor de defectos congénitos, seguido del sistema digestivo, genitourinarias y del sistema nervioso central. Las edades maternas estuvieron comprendidas entre 21 y 30 años, siendo el municipio Tunas el que aportó un número significativo de afectados

Trade-Based Estimation of Bluefin Tuna Catches in the Eastern Atlantic and Mediterranean, 2005–2011

Science.gov (United States)

Gagern, Antonius; van den Bergh, Jeroen; Sumaila, Ussif Rashid

2013-01-01

The Eastern Atlantic and Mediterranean stock of Bluefin tuna Thunnus thynnus (BFTE) has long been considered overfished and at risk of collapse. Although ICCAT quotas for this stock have decreased considerably over the past years, uncertainty exists about the degree of catch beyond this quota. The extent of such catch is an important piece of information in stock assessment models as well as being an indicator of the effectiveness of fisheries management. We present a model using Bluefin tuna trade data to infer actual catches. Basing our calculations on 25 countries involved in BFTE trade, we estimate that between 2005 and 2011, allowable quotas were exceeded by 44 percent. This gap between catch and quotas has slightly increased over past years, leading to estimated excess catches of 57 percent for the period between 2008 and 2011. To improve assessments, preparation and design of BFTE management, we suggest that the estimated total removals reported in this paper be included in stock assessment models for BFTE. An implication of our findings is that ICCAT member states should take stronger measures to monitor and enforce compliance with quotas. PMID:23922870

Report on the intercomparison run IAEA-352 radionuclides in tuna fish flesh

International Nuclear Information System (INIS)

Ballestra, S.; Vas, D.; Lopez, J.J.; Noshkin, V.

1990-08-01

The results of an intercomparison exercise on a sample of tuna fish flesh from the Mediterranean Sea, IAEA-352, designed for the determination of artificial and natural radionuclides levels, are reported. The data from 63 laboratories from 31 countries have been evaluated. The following are the recommended values, with confidence intervals, for the most frequently measured radionuclides (Reference data: 1 January 1989): 137 Cs 2.7 Bq kg -1 , 90 Sr 0.2 Bq Kg -1 , 40 K 391 Bq Kg -1 , 210 Pb 0.6 Bq Kg -1 , 210 Po 2.2 Bq Kg -1 . Tabs

Morphological, nutritional and safety traits of bluefin tuna (Thunnus thynnus reared in floating cages

Directory of Open Access Journals (Sweden)

B. M. Poli

2010-04-01

Full Text Available To evaluate the influence of fattening on morphological, nutritional and safety characteristics, two lots of bluefin tuna were sampled before (November: 2 C, 4 ? and after 5 months of fattening (April: 5 C, 5 ?. The specimens, after death, were refrigerated and analysed at different times over the period of a week for morphological and flesh physico-chemical parameters in six muscle sites. Tuna sampled in April had greater body weight (44.04 vs 36.41kg, trunk length (52.21 vs 48.22cm and minimum and maximum circumferences (13.74 vs 12.77 and 94.90 vs 89.10cm. No differences in other linear measures or body components were found. Fattening did not influence flesh colour or total lipid content, producing small differences in its chemical composition: greater C18:0, C18:1n9 and PUFAn6 percentages; higher putrescine and histamine (0.489 vs 0.335 and 0.666 vs 0.370mg/kg but lower spermine and spermidine (10.598 vs 17.387 and 2.420 vs 3.928mg/kg levels. Large differences in physico-chemical parameters were found between muscle sites and a significant interaction between sampling date and muscle site indicated non homogeneous changes in chemical composition of dorsal, ventral and red muscle after fattening. Sex only influenced fat content in viscera (C 12.84 vs ? 9.84%.

Structural stability of nonlinear population dynamics.

Science.gov (United States)

Cenci, Simone; Saavedra, Serguei

2018-01-01

In population dynamics, the concept of structural stability has been used to quantify the tolerance of a system to environmental perturbations. Yet, measuring the structural stability of nonlinear dynamical systems remains a challenging task. Focusing on the classic Lotka-Volterra dynamics, because of the linearity of the functional response, it has been possible to measure the conditions compatible with a structurally stable system. However, the functional response of biological communities is not always well approximated by deterministic linear functions. Thus, it is unclear the extent to which this linear approach can be generalized to other population dynamics models. Here, we show that the same approach used to investigate the classic Lotka-Volterra dynamics, which is called the structural approach, can be applied to a much larger class of nonlinear models. This class covers a large number of nonlinear functional responses that have been intensively investigated both theoretically and experimentally. We also investigate the applicability of the structural approach to stochastic dynamical systems and we provide a measure of structural stability for finite populations. Overall, we show that the structural approach can provide reliable and tractable information about the qualitative behavior of many nonlinear dynamical systems.

Structural stability of nonlinear population dynamics

Science.gov (United States)

Cenci, Simone; Saavedra, Serguei

2018-01-01

In population dynamics, the concept of structural stability has been used to quantify the tolerance of a system to environmental perturbations. Yet, measuring the structural stability of nonlinear dynamical systems remains a challenging task. Focusing on the classic Lotka-Volterra dynamics, because of the linearity of the functional response, it has been possible to measure the conditions compatible with a structurally stable system. However, the functional response of biological communities is not always well approximated by deterministic linear functions. Thus, it is unclear the extent to which this linear approach can be generalized to other population dynamics models. Here, we show that the same approach used to investigate the classic Lotka-Volterra dynamics, which is called the structural approach, can be applied to a much larger class of nonlinear models. This class covers a large number of nonlinear functional responses that have been intensively investigated both theoretically and experimentally. We also investigate the applicability of the structural approach to stochastic dynamical systems and we provide a measure of structural stability for finite populations. Overall, we show that the structural approach can provide reliable and tractable information about the qualitative behavior of many nonlinear dynamical systems.

Characterization of tuna cooking effluents generated in seafood canning industries; Caracterizacion de los efluentes de coccion de atum generados en la industrias conserveras de productos marinos

Energy Technology Data Exchange (ETDEWEB)

Mendez Paz, D.; Torres Ayaso, A. B.; Vieites Baptista de Sousa, J. M.

2006-07-01

Tuna cooking effluents from different factories were analyzed, in this work. It has been analyzed effluents form water cooking and steam cooking processes. Steam cooking effluents are more appropriate for protein recovery due to the higher protein concentrations (up to 10 g/l, in some cases) and lower volume. Besides, steam cooking effluents, chemical oxygen demand (COD) and total Kjeldahl nitrogen (TKN) were up to 50 and 5 g/l, respectively. Different correlations between the main parameters the main parameters have been found, for example protein and TKN concentrations of a tuna cooking effluent can be estimated from COD concentrations. (Author) 9 refs.

Towards sustainable mobile systems configurations: Application to a tuna purse seiner.

Science.gov (United States)

García Rellán, A; Vázquez Brea, C; Bello Bugallo, P M

2018-08-01

Fishing is one of the most important marine activities. It contributes to both overfishing and marine pollution, the two main threats to the ocean environment. In this context, the aim of this work is to investigate and validate methodologies for the identification of more sustainable operating configurations for a tuna purse seiner. The proposed methodology is based on a previous one applied to secondary industrial systems, taking into account the Integrated Pollution Prevention and Control focus, developed for the most potentially industrial polluting sources. The idea is to apply the same type of methodologies and concepts used for secondary industrial punctual sources, to a primary industrial mobile activity. This methodology combines two tools: "Material and Energy Flow Analysis" (a tool from industrial metabolism), and "Best Available Techniques Analysis". The first provides a way to detect "Improvable Flows" into de system, and the second provides a way to define sustainable options to improve them. Five main Improvable Flows have been identified in the selected case study, the activity of a purse seiner, most of them related with energy consumption and air emission, in different stages of the fishing activity. Thirty-one Best Available Techniques candidates for the system have been inventoried, that potentially could improve the sustainability of the activity. Seven of them are not implemented yet to the case study. The potential improvements of the system proposed by this work are related to energy efficiency, waste management, prevention and control of air emissions. This methodology demonstrates to be a good tool towards sustainable punctual systems, but also towards sustainable mobile systems such as the fishing activity in oceans, as the tuna purse seiner validated here. The practical application of the identified technologies to fishing systems will contribute to prevent and reduce marine pollution, one of the greatest threats of today's oceans

Population activity structure of excitatory and inhibitory neurons.

Science.gov (United States)

Bittner, Sean R; Williamson, Ryan C; Snyder, Adam C; Litwin-Kumar, Ashok; Doiron, Brent; Chase, Steven M; Smith, Matthew A; Yu, Byron M

2017-01-01

Many studies use population analysis approaches, such as dimensionality reduction, to characterize the activity of large groups of neurons. To date, these methods have treated each neuron equally, without taking into account whether neurons are excitatory or inhibitory. We studied population activity structure as a function of neuron type by applying factor analysis to spontaneous activity from spiking networks with balanced excitation and inhibition. Throughout the study, we characterized population activity structure by measuring its dimensionality and the percentage of overall activity variance that is shared among neurons. First, by sampling only excitatory or only inhibitory neurons, we found that the activity structures of these two populations in balanced networks are measurably different. We also found that the population activity structure is dependent on the ratio of excitatory to inhibitory neurons sampled. Finally we classified neurons from extracellular recordings in the primary visual cortex of anesthetized macaques as putative excitatory or inhibitory using waveform classification, and found similarities with the neuron type-specific population activity structure of a balanced network with excitatory clustering. These results imply that knowledge of neuron type is important, and allows for stronger statistical tests, when interpreting population activity structure.

Population activity structure of excitatory and inhibitory neurons.

Directory of Open Access Journals (Sweden)

Sean R Bittner

Full Text Available Many studies use population analysis approaches, such as dimensionality reduction, to characterize the activity of large groups of neurons. To date, these methods have treated each neuron equally, without taking into account whether neurons are excitatory or inhibitory. We studied population activity structure as a function of neuron type by applying factor analysis to spontaneous activity from spiking networks with balanced excitation and inhibition. Throughout the study, we characterized population activity structure by measuring its dimensionality and the percentage of overall activity variance that is shared among neurons. First, by sampling only excitatory or only inhibitory neurons, we found that the activity structures of these two populations in balanced networks are measurably different. We also found that the population activity structure is dependent on the ratio of excitatory to inhibitory neurons sampled. Finally we classified neurons from extracellular recordings in the primary visual cortex of anesthetized macaques as putative excitatory or inhibitory using waveform classification, and found similarities with the neuron type-specific population activity structure of a balanced network with excitatory clustering. These results imply that knowledge of neuron type is important, and allows for stronger statistical tests, when interpreting population activity structure.

Population activity structure of excitatory and inhibitory neurons

Science.gov (United States)

Doiron, Brent

2017-01-01

Many studies use population analysis approaches, such as dimensionality reduction, to characterize the activity of large groups of neurons. To date, these methods have treated each neuron equally, without taking into account whether neurons are excitatory or inhibitory. We studied population activity structure as a function of neuron type by applying factor analysis to spontaneous activity from spiking networks with balanced excitation and inhibition. Throughout the study, we characterized population activity structure by measuring its dimensionality and the percentage of overall activity variance that is shared among neurons. First, by sampling only excitatory or only inhibitory neurons, we found that the activity structures of these two populations in balanced networks are measurably different. We also found that the population activity structure is dependent on the ratio of excitatory to inhibitory neurons sampled. Finally we classified neurons from extracellular recordings in the primary visual cortex of anesthetized macaques as putative excitatory or inhibitory using waveform classification, and found similarities with the neuron type-specific population activity structure of a balanced network with excitatory clustering. These results imply that knowledge of neuron type is important, and allows for stronger statistical tests, when interpreting population activity structure. PMID:28817581

Formulación de una mermelada a partir de pulpa y cáscara de tunas (Opuntia spp. elaborada a nivel planta piloto Formulación de una mermelada a partir de pulpa y cáscara de tunas (Opuntia spp. elaborada a nivel planta piloto

Directory of Open Access Journals (Sweden)

José Luis Magaña Ramírez

2012-02-01

Full Text Available After a series of experimental tests of jam pulp-based and peel of prickly pear fruit at a laboratory level, generated from previous research projects, and based on results of sensory evaluation, microbiological and physicochemical analysis, it was selected a formulation for a jam from a mixture of pulp and peel of prickly pear fruit “reyna” variety, and “xoconostle” prickly pear fruit pulp for processing at the pilot platform. The jam produced was characterized by physicochemical analysis and microbiological. In the physicochemical analysis, it was included the determination of dietetic fiber (4.35 g dietetic fiber/15 g jam, being one of the most important evaluation, which value comes mainly from the skin of prickly pear fruit. From the physicochemical analysis, it was designed a label for the jam produced. Based on the specifications required by the “Norma Oficial Mexicana”, the product can be considered suitable for consumption and marketing purposes. Después de una serie de pruebas experimentales de mermeladas a base de pulpa y cás­cara de tunas a nivel laboratorio, generados de proyectos de investigación anteriores, y con base en resultados de evaluación sensorial, análisis microbiológico y fisicoquímico, se seleccionó una formulación de mermelada a partir de una mezcla de pulpa y cáscara de tuna variedad reyna, y pulpa de tuna variedad xoconostle para su procesamiento a nivel planta piloto. La mermelada elaborada fue caracterizada mediante análisis fisicoquímico y microbiológico. Dentro de los análisis fisicoquímicos se incluyó la determinación de Fibra Dietética (4.35 g de fibra dietética/15 g de mermelada, siendo éste uno de los análisis más importantes, cuyo valor procede principalmente de la cáscara de las tunas. Basados en las especificaciones exigidas por la Norma Oficial Mexicana, el producto puede considerarse apto para su consumo y para propósitos de comercialización.

Calculating evolutionary dynamics in structured populations.

Directory of Open Access Journals (Sweden)

Charles G Nathanson

2009-12-01

Full Text Available Evolution is shaping the world around us. At the core of every evolutionary process is a population of reproducing individuals. The outcome of an evolutionary process depends on population structure. Here we provide a general formula for calculating evolutionary dynamics in a wide class of structured populations. This class includes the recently introduced "games in phenotype space" and "evolutionary set theory." There can be local interactions for determining the relative fitness of individuals, but we require global updating, which means all individuals compete uniformly for reproduction. We study the competition of two strategies in the context of an evolutionary game and determine which strategy is favored in the limit of weak selection. We derive an intuitive formula for the structure coefficient, sigma, and provide a method for efficient numerical calculation.

Visualising the demographic factors which shape population age structure

Directory of Open Access Journals (Sweden)

Tom Wilson

2016-09-01

Full Text Available Background: The population pyramid is one of the most popular tools for visualising population age structure. However, it is difficult to discern from the diagram the relative effects of different demographic components on the size of age-specific populations, making it hard to understand exactly how a population's age structure is formed. Objective: The aim of this paper is to introduce a type of population pyramid which shows how births, deaths, and migration have shaped a population's age structure. Methods: Births, deaths, and population data were obtained from the Human Mortality Database and the Australian Bureau of Statistics. A variation on the conventional population pyramid, termed here a components-of-change pyramid, was created. Based on cohort population accounts, it illustrates how births, deaths, and net migration have created the population of each age group. A simple measure which summarises the impact of net migration on age structure is also suggested. Results: Example components-of-change pyramids for several countries and subnational regions are presented, which illustrate how births, deaths, and net migration have fashioned current population age structures. The influence of migration is shown to vary greatly between populations. Conclusions: The new type of pyramid aids interpretation of a population's age structure and helps to understand its demographic history over the last century.

Anaerobic co-digestion of animal waste: swine manure and tuna fish waste

Energy Technology Data Exchange (ETDEWEB)

Otero, L.; Alvarez, J. A.; Lema, J. M.

2009-07-01

Anaerobic digestion has become an established and proven technology for the treatment of solid wastes. Co-digestion offers several possible ecological, technology and economical advantages. Anaerobic co-digestion can increase CH{sub 4} production of manure diesters in a 50-200% according to the operation conditions and the co-substrates used. Last September 2007, PROBIOGAS project started up with the objective of improving the production and use of biogas from co-digestion of farming, agricultural and industrial waste. Our research group takes part in the study of co-digestion of swine manure firstly with tuna fish waste and secondly with glycerine (bio diesel production waste). (Author)

Mercury accumulation in Yellowfin tuna (Thunnus albacares) with regards to muscle type, muscle position and fish size.

Science.gov (United States)

Bosch, Adina C; O'Neill, Bernadette; Sigge, Gunnar O; Kerwath, Sven E; Hoffman, Louwrens C

2016-01-01

The concentrations and relationships between individual mercury species and total mercury were investigated in different muscle parts and sizes of Yellowfin tuna (Thunnus albacares). Fourteen Yellowfin tuna caught in the South Atlantic off the coast of South Africa had an average total Hg (tHg) concentration of 0.77 mg/kg wet weight. No differences were detected (p > 0.05) in tHg, MethylHg (MeHg) or inorganic Hg (iHg) accumulation among the four white muscle portions across the carcass, but both tHg and iHg were found in higher concentrations (p < 0.001) in dark muscle than white muscle. Positive linear correlations with fish weight were found for both tHg (r = 0.79, p < 0.001) and MeHg (r = 0.75, p < 0.001) concentrations. A prediction model was formulated to calculate toxic MeHg concentrations from measured tHg concentrations and fish weight (cMeHg = 0.073 + 1.365 · tHg-0.008 · w). As sampling sites and subsampling methods could affect toxicity measurements, we provide recommendations for sampling guidelines. Copyright © 2015 Elsevier Ltd. All rights reserved.

Structured population dynamics: continuous size and discontinuous stage structures.

Science.gov (United States)

Buffoni, Giuseppe; Pasquali, Sara

2007-04-01

A nonlinear stochastic model for the dynamics of a population with either a continuous size structure or a discontinuous stage structure is formulated in the Eulerian formalism. It takes into account dispersion effects due to stochastic variability of the development process of the individuals. The discrete equations of the numerical approximation are derived, and an analysis of the existence and stability of the equilibrium states is performed. An application to a copepod population is illustrated; numerical results of Eulerian and Lagrangian models are compared.

Characteristics and nutritional value of whole wheat cracker fortified with tuna bone bio-calcium powder.

Science.gov (United States)

Benjakul, Soottawat; Karnjanapratum, Supatra

2018-09-01

Whole wheat cracker fortified with tuna bone bio-calcium (Bio-Ca) powder was developed as health-promoting food rich in calcium. Fortification with different levels of Bi-Ca, over the range of 0-50% of whole wheat flour (w/w) on quality and sensory properties of crackers, were determined. Color, thickness, weight and textural properties of crackers varied with the different levels of Bio-Ca powder added, but it was found that up to 30% could be added without detrimental effect on sensory properties. Scanning electron microscopic images showed that the developed crackers were less porous and had a denser structure, compared to the control. Based on scanning electron microscopy-energy dispersive X-ray spectroscopic (SEM-EDX), the cracker containing Bio-Ca powder had calcium and phosphorous distribution with higher intensity, compared to the control. The fortified crackers were rich in calcium and phosphorous with higher protein content but lower fat, carbohydrate, cholesterol and energy value, compared to the control. Copyright © 2018 Elsevier Ltd. All rights reserved.

PENYULUHAN METODE PAP SMEAR TERHADAP TINGKAT PENGETAHUAN DAN SIKAP WANITA TUNA SUSILA DALAM PENDETEKSIAN KANKER SERVIKS

Directory of Open Access Journals (Sweden)

Ismi Wulandari AS

2015-03-01

Full Text Available Abstract: The Effectiveness Of Pap smear Test’s Counseling Regarding To The Level Of Knowledge And Behaviour In Prostitution Worker For Detection Of Cervical Cancer In Bintang Mas Kubu Raya 2014. The aim of this study is to evaluate the effectivity of counseling toward knowledge and behavior. in prostitution worker about pap smear and cervical cancer. This research was quasi-experimental with one group pretest-postest design. There are 38 respondents. McNemar test showed there are significant. improvement of knowledge (p<0.05, and significance behavior change (p<0.05 in all respondents before and after counseling. Keyword : knowledge, behaviour, cervical cancer, pap smear Abstrak : Penyuluhan Metode Pap smear Terhadap Tingkat Pengetahuan Dan Sikap Wanita Tuna Susila Dalam Pendeteksian Kanker Serviks. Tujuan penelitian ini yaitu untuk melihat efektivitas terhadap pengetahuan dan sikap melalui penyuluhan mengenai pap smear kepada para wanita tuna susila. Rancangan penelitian yang digunakan dalam penelitian ini adalah quasi eksperimental dengan rancangan one group pretest-postest design. Besar sampel berjumlah 38 orang. Hasil menunjukkan uji McNemar menunjukkan terdapat signifikansi yang bermakna untuk pengetahuan (p < 0,05 dan signifikansi untuk perubahan sikap (p<0.05 pada responden sebelum dan setelah penyuluhan. Kata kunci : pengetahuan, sikap, kanker serviks, pap smear

Structured population models in biology and epidemiology

CERN Document Server

Ruan, Shigui

2008-01-01

This book consists of six chapters written by leading researchers in mathematical biology. These chapters present recent and important developments in the study of structured population models in biology and epidemiology. Topics include population models structured by age, size, and spatial position; size-structured models for metapopulations, macroparasitc diseases, and prion proliferation; models for transmission of microparasites between host populations living on non-coincident spatial domains; spatiotemporal patterns of disease spread; method of aggregation of variables in population dynamics; and biofilm models. It is suitable as a textbook for a mathematical biology course or a summer school at the advanced undergraduate and graduate level. It can also serve as a reference book for researchers looking for either interesting and specific problems to work on or useful techniques and discussions of some particular problems.

The population genomics of begomoviruses: global scale population structure and gene flow

Directory of Open Access Journals (Sweden)

Prasanna HC

2010-09-01

Full Text Available Abstract Background The rapidly growing availability of diverse full genome sequences from across the world is increasing the feasibility of studying the large-scale population processes that underly observable pattern of virus diversity. In particular, characterizing the genetic structure of virus populations could potentially reveal much about how factors such as geographical distributions, host ranges and gene flow between populations combine to produce the discontinuous patterns of genetic diversity that we perceive as distinct virus species. Among the richest and most diverse full genome datasets that are available is that for the dicotyledonous plant infecting genus, Begomovirus, in the Family Geminiviridae. The begomoviruses all share the same whitefly vector, are highly recombinogenic and are distributed throughout tropical and subtropical regions where they seriously threaten the food security of the world's poorest people. Results We focus here on using a model-based population genetic approach to identify the genetically distinct sub-populations within the global begomovirus meta-population. We demonstrate the existence of at least seven major sub-populations that can further be sub-divided into as many as thirty four significantly differentiated and genetically cohesive minor sub-populations. Using the population structure framework revealed in the present study, we further explored the extent of gene flow and recombination between genetic populations. Conclusions Although geographical barriers are apparently the most significant underlying cause of the seven major population sub-divisions, within the framework of these sub-divisions, we explore patterns of gene flow to reveal that both host range differences and genetic barriers to recombination have probably been major contributors to the minor population sub-divisions that we have identified. We believe that the global Begomovirus population structure revealed here could

Molecular and morphological identification of Cardicola (Trematoda: Aporocotylidae) eggs in hatchery-reared and migratory Atlantic bluefin tuna (Thunnus thynnus L.)

Czech Academy of Sciences Publication Activity Database

Forte-Gil, D.; Holzer, Astrid S.; Pecková, Hana; Bartošová-Sojková, Pavla; Peñalver, J.; Dolores, E.M.; Muñoz, P.

2016-01-01

Roč. 450, JAN 1 (2016), s. 58-66 ISSN 0044-8486 R&D Projects: GA ČR GBP505/12/G112 Institutional support: RVO:60077344 Keywords : Aquaculture * Atlantic bluefin tuna * Blood fluke * Cardicola * Migration * Thunnus thynnus Subject RIV: EG - Zoology Impact factor: 2.570, year: 2016

Stability patterns for a size-structured population model and its stage-structured counterpart

DEFF Research Database (Denmark)

Zhang, Lai; Pedersen, Michael; Lin, Zhigui

2015-01-01

In this paper we compare a general size-structured population model, where a size-structured consumer feeds upon an unstructured resource, to its simplified stage-structured counterpart in terms of equilibrium stability. Stability of the size-structured model is understood in terms of an equivale...... to the population level....

Population structure analysis using rare and common functional variants

Directory of Open Access Journals (Sweden)

Ding Lili

2011-11-01

Full Text Available Abstract Next-generation sequencing technologies now make it possible to genotype and measure hundreds of thousands of rare genetic variations in individuals across the genome. Characterization of high-density genetic variation facilitates control of population genetic structure on a finer scale before large-scale genotyping in disease genetics studies. Population structure is a well-known, prevalent, and important factor in common variant genetic studies, but its relevance in rare variants is unclear. We perform an extensive population structure analysis using common and rare functional variants from the Genetic Analysis Workshop 17 mini-exome sequence. The analysis based on common functional variants required 388 principal components to account for 90% of the variation in population structure. However, an analysis based on rare variants required 532 significant principal components to account for similar levels of variation. Using rare variants, we detected fine-scale substructure beyond the population structure identified using common functional variants. Our results show that the level of population structure embedded in rare variant data is different from the level embedded in common variant data and that correcting for population structure is only as good as the level one wishes to correct.

BIOSORCIÓN DE Cd, Pb y Zn POR BIOMASA PRETRATADA DE ALGAS ROJAS, CÁSCARA DE NARANJA Y TUNA

Directory of Open Access Journals (Sweden)

Lissette Vizcaíno Mendoza

2015-01-01

Full Text Available Debido a su movilidad en los ecosistemas y a su toxicidad para las formas superiores de vida,los metales pesados Cd, Pb y Zn son priorizados como unos de los contaminantes inorgánicosmás importantes debido al alto riesgo que representan para el medio ambiente. Con el objeto dedisminuir su concentración se diseñó un sistema para evaluar su remoción empleando biomasade algas rojas, cáscaras de naranja (Citrus sp. y tuna guajira (Opuntia sp.. Se estudió la influenciadel pretratamiento y el empaquetamiento mediante ensayos tipo batch, en los que se emplearonsoluciones de sodio y calcio. Se obtuvo como resultado una mayor capacidad de sorción de lasalgas modificadas con NaOH 0.1 N y de la naranja y la tuna con modificación sucesiva con NaOH yCaCl20.2 M, y una afección poco significativa (≤1% del proceso de sorción al empacar la biomasael placas planas de tul poliéster. La eficiencia de remoción se determinó mediante un reactor deflujo continuo de columna fija con un volumen líquido de 400 mL, 75 g de biomasa y tiemposde retención promedio de 1 y 2 h. Los resultados mostraron una eficiencia similar de las tresbiomasas para remover Cd y Pb, con promedios superiores al 95%, mientras que el Zn se removiócon mejor eficiencia (62% al emplear tuna modificada como sorbente. Finalmente, el materialse calcinó a 700 °C con lo que se obtuvo una ceniza estable frente a soluciones ácidas, lo cualgarantiza la captura de los metales removidos.

FISHING GROUND, CACTH COMPOSITION, HOOK RATE AND LENGTH DISTRIBUTION OF BILLFISHES CAUGHT BY TUNA LONG LINE IN INDIAN OCEAN

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Fathur Rochman

2013-12-01

Full Text Available Billfishes area by cacth of tuna long line vessels in Indian Ocean. Billfish are consist of swordfish Xiphias gladius, black marlin Makaira indica, indo facific blue marlin Makaira mazara, stripe marlin Tetrapturus audax, indo facific sailfish Istiophorus platypterus and shortbill spearfish Tetrapturus angustirostris. Besides that, billfishes also have important economic value compared with tuna as an exsported species such as swordfish and marlin. To optimize the catch of billfishes in Indian Ocean, data and information of potential fishing ground, size and catch composition of this species are needed. The billfishes cacth composition collected in 2011 were dominated by 45% swordfish, 20% black marlin, 19% blue marlin,9% short bill spearfish, 6% sailfish and 1%stripe marlin. The billfishes size range which were caught between 60 - 280 cm LJFL (Lower Jaw Fork Length. The sword fish average length was 150 cm, blue marlin 197 cm, black Marlin 189 cm, sailfish 150cm ,short bill spearfish 144 cm and stripe marlin159 cm. From this observation, it was found that most of billfishes caught were in mature.

Population structure and recruitment of penaeid shrimps in ...

African Journals Online (AJOL)

Population structure and recruitment of penaeid shrimps in mozambique. ... This study characterizes the population structure and identifies nursery areas and recruitment seasons of penaeid shrimps in the ... AJOL African Journals Online.

Population Structure of West Greenland Narwhals

DEFF Research Database (Denmark)

Riget, F.; Dietz, R.; Møller, P.

The hypothesis that different populations of narwhals in the West Greenland area exist has been tested by different biomarkers (metal and organochlorine concentrations, stable isotopes and DNA). Samples of muscle, liver, kidney, blubber and skin tissues of narwhals from West Greenland have been...... isotopes could not support the population structure with two West Greenland populations suggested by the genetic study....

Colagenosis con afectación dermatológica en edades pediátricas en Las Tunas, 2010 - 2012

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Katiuska Tamayo Mariño

2014-08-01

Full Text Available El estudio de las enfermedades del colágeno en edades pediátricas es relativamente joven y no se cuenta en Las Tunas con archivos que permitan evaluar su comportamiento, por ello se realizó un estudio descriptivo, transversal y prospectivo en el período comprendido entre los años 2010 al 2012, para caracterizar a los pacientes ingresados con estas enfermedades en el hospital pediátrico Mártires de Las Tunas. Inicialmente se determinaron las conectivopatias diagnosticadas con más frecuencia y luego se estudiaron las variables: sexo, edad, color de la piel, procedencia geográfica y antecedentes patológicos familiares de colagenosis, Los resultados fueron expuestos en tablas y expresados en porcientos. Predominaron la artritis idiopática juvenil, seguido de la fiebre reumática y la morfea. El sexo más frecuente fue el femenino, el grupo de edad más afectado fueron los adolescentes mayores de 13 años, el color de la piel que prevaleció fue el blanco y predominaron los pacientes sin antecedentes patológicos familiares de colagenosis

Population structure of the Classic period Maya.

Science.gov (United States)

Scherer, Andrew K

2007-03-01

This study examines the population structure of Classic period (A.D. 250-900) Maya populations through analysis of odontometric variation of 827 skeletons from 12 archaeological sites in Mexico, Guatemala, Belize, and Honduras. The hypothesis that isolation by distance characterized Classic period Maya population structure is tested using Relethford and Blangero's (Hum Biol 62 (1990) 5-25) approach to R matrix analysis for quantitative traits. These results provide important biological data for understanding ancient Maya population history, particularly the effects of the competing Tikal and Calakmul hegemonies on patterns of lowland Maya site interaction. An overall F(ST) of 0.018 is found for the Maya area, indicating little among-group variation for the Classic Maya sites tested. Principal coordinates plots derived from the R matrix analysis show little regional patterning in the data, though the geographic outliers of Kaminaljuyu and a pooled Pacific Coast sample did not cluster with the lowland Maya sites. Mantel tests comparing the biological distance matrix to a geographic distance matrix found no association between genetic and geographic distance. In the Relethford-Blangero analysis, most sites possess negative or near-zero residuals, indicating minimal extraregional gene flow. The exceptions were Barton Ramie, Kaminaljuyu, and Seibal. A scaled R matrix analysis clarifies that genetic drift is a consideration for understanding Classic Maya population structure. All results indicate that isolation by distance does not describe Classic period Maya population structure. (c) 2006 Wiley-Liss, Inc.

A Satellite Imagery, Ecosystem-Based GIS Study of Bluefin Tuna and Right Whale Distribution and Movements in the Gulf of Marine and NW Atlantic

National Research Council Canada - National Science Library

Lutcavage, Molly

2002-01-01

The goals of this research were to develop a GIS workstation to examine the distribution, relative abundance, and behavior of Atlantic bluefin tuna and the Northern right whale in relation to their environment and prey...

Dominance and population structure of freshwater crabs ...

African Journals Online (AJOL)

To understand how this would affect wild populations we also investigated the population structure (sex ratio, size distribution, density and population growth) of a wild population. Using Landau's index of linearity (h) we found three captive groups of P. perlatus to show moderate linearity, i.e. h = 0.9; 0.81 and 0.83.

Comparative population structure of cavity-nesting sea ducks

Science.gov (United States)

Pearce, John M.; Eadie, John M.; Savard, Jean-Pierre L.; Christensen, Thomas K.; Berdeen, James; Taylor, Eric J.; Boyd, Sean; Einarsson, Árni

2014-01-01

A growing collection of mtDNA genetic information from waterfowl species across North America suggests that larger-bodied cavity-nesting species exhibit greater levels of population differentiation than smaller-bodied congeners. Although little is known about nest-cavity availability for these species, one hypothesis to explain differences in population structure is reduced dispersal tendency of larger-bodied cavity-nesting species due to limited abundance of large cavities. To investigate this hypothesis, we examined population structure of three cavity-nesting waterfowl species distributed across much of North America: Barrow's Goldeneye (Bucephala islandica), Common Goldeneye (B. clangula), and Bufflehead (B. albeola). We compared patterns of population structure using both variation in mtDNA control-region sequences and band-recovery data for the same species and geographic regions. Results were highly congruent between data types, showing structured population patterns for Barrow's and Common Goldeneye but not for Bufflehead. Consistent with our prediction, the smallest cavity-nesting species, the Bufflehead, exhibited the lowest level of population differentiation due to increased dispersal and gene flow. Results provide evidence for discrete Old and New World populations of Common Goldeneye and for differentiation of regional groups of both goldeneye species in Alaska, the Pacific Northwest, and the eastern coast of North America. Results presented here will aid management objectives that require an understanding of population delineation and migratory connectivity between breeding and wintering areas. Comparative studies such as this one highlight factors that may drive patterns of genetic diversity and population trends.

Evaluation of Antioxidant Activity of Extracts of Marine Algae Halimeda tuna Collected from the Chabahar Bay

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Ali Taheri

2017-07-01

Full Text Available Background and Objectives: Seaweeds are one of the richest sources of natural antioxidants. Antioxidants are main factors of free radical scavenging, which prevent from chronic diseases and food deterioration. These compounds can also be extracted from seaweeds. In this study, the antioxidant activity of the extracts from marine algae Halimeda tuna collected from the coast of Chabahar, was evaluated. Methods: This is an in vitro study. The antioxidant activity of methanol, chloroform, ethyl acetate, and n-hexanic extracts of the algae, were evaluated using three methods of DPPH, ferrous ion chelating activity, and reduction power methods. Data were analyzed by one-way ANOVA and Tukey test at the probability level of 95%. Results: In this study, the highest antioxidant capacity according to DPPH, was related to the chloroform extract (72.85% inhibition at the concentration of 1mg/ml. In the ferrous ion chelating activity, the highest percentage of chelating was allocated to the methanol extract (81.46%. Based on the data from the reduction power test, the highest reduction activity was related to the methanol extract with absorption of 0.553 (concentration, 1mg/ml. Conclusion: Based on the results of this research, the extracts of Halimeda tuna have the potential for application in medicine and pharmaceutical industry and must be confirmed by preclinical and clinical studies.

Dynamical community structure of populations evolving on genotype networks

International Nuclear Information System (INIS)

Capitán, José A.; Aguirre, Jacobo; Manrubia, Susanna

2015-01-01

Neutral evolutionary dynamics of replicators occurs on large and heterogeneous networks of genotypes. These networks, formed by all genotypes that yield the same phenotype, have a complex architecture that conditions the molecular composition of populations and their movements on genome spaces. Here we consider as an example the case of populations evolving on RNA secondary structure neutral networks and study the community structure of the network revealed through dynamical properties of the population at equilibrium and during adaptive transients. We unveil a rich hierarchical community structure that, eventually, can be traced back to the non-trivial relationship between RNA secondary structure and sequence composition. We demonstrate that usual measures of modularity that only take into account the static, topological structure of networks, cannot identify the community structure disclosed by population dynamics

Modeling evolutionary games in populations with demographic structure

DEFF Research Database (Denmark)

Li, Xiang-Yi; Giaimo, Stefano; Baudisch, Annette

2015-01-01

interactions, but usually omits life history and the demographic structure of the population. Here we show how an integration of both aspects can substantially alter the underlying evolutionary dynamics. We study the replicator dynamics of strategy interactions in life stage structured populations. Individuals...

Global pollution monitoring of polychlorinated dibenzo-p-dioxins (PCDDs), furans (PCDFs) and coplanar polychlorinated biphenyls (coplanar PCBs) using skipjack tuna as bioindicator

Energy Technology Data Exchange (ETDEWEB)

Ueno, Daisuke [Center for Marine Environmental Studies (CMES), Ehime University, Bunkyo-cho 2-5, Matsuyama 790-8577 (Japan); Watanabe, Mafumi [Center for Marine Environmental Studies (CMES), Ehime University, Bunkyo-cho 2-5, Matsuyama 790-8577 (Japan); Subramanian, Annamalai [Center for Marine Environmental Studies (CMES), Ehime University, Bunkyo-cho 2-5, Matsuyama 790-8577 (Japan); Tanaka, Hiroyuki [National Research Institute of Fisheries and Environment of Inland Sea (Japan); Fillmann, Gilberto [Fundacao Universidade Federal do Rio Grande (Brazil); Lam, Paul K.S. [Department of Biology and Chemistry, City University of Hong Kong, Hong Kong (China); Zheng, Gene J. [Department of Biology and Chemistry, City University of Hong Kong, Hong Kong (China); Muchtar, Muswerry [Research and Development Center for Oceanology, Indonesian Institute of Sciences (Indonesia); Razak, Hamidah [Research and Development Center for Oceanology, Indonesian Institute of Sciences (Indonesia); Prudente, Maricar [Science Education Department, De La Salle University (Philippines); Chung, Kyu-Hyuck [College of Pharmacy, Sungkyunkwan University (Korea, Republic of); Tanabe, Shinsuke [Center for Marine Environmental Studies (CMES), Ehime University, Bunkyo-cho 2-5, Matsuyama 790-8577 (Japan)]. E-mail: shinsuke@agr.ehime-u.ac.jp

2005-07-15

In order to elucidate the global distribution of dioxins and related compounds, such as PCDDs, PCDFs and coplanar PCBs, levels of these compounds were determined in the muscle of skipjack tuna (Katsuwonus pelamis) collected from the offshore waters and open seas near Japan, Taiwan, Philippines, Indonesia, Seychelles and Brazil, and the Japan Sea, the East China Sea, the South China Sea, the Indian Ocean and the North Pacific Ocean. PCDDs, PCDFs and coplanar PCBs were detected in almost all the specimens collected from all the locations surveyed, indicating widespread contamination by these compounds in the marine environment. Higher concentrations of dioxins and coplanar PCBs were detected in the samples from temperate Asian regions, plausibly due to larger usage and anthropogenic generation in highly industrialized countries around the East China Sea and the South China Sea, such as Japan, Korea, Taiwan, Hong Kong and coastal China. - Global pollution monitoring of PCDD/Fs and coplanar PCBs in offshore water and open sea were conducted using skipjack tuna as bioindicator.

Global pollution monitoring of polychlorinated dibenzo-p-dioxins (PCDDs), furans (PCDFs) and coplanar polychlorinated biphenyls (coplanar PCBs) using skipjack tuna as bioindicator

International Nuclear Information System (INIS)

Ueno, Daisuke; Watanabe, Mafumi; Subramanian, Annamalai; Tanaka, Hiroyuki; Fillmann, Gilberto; Lam, Paul K.S.; Zheng, Gene J.; Muchtar, Muswerry; Razak, Hamidah; Prudente, Maricar; Chung, Kyu-Hyuck; Tanabe, Shinsuke

2005-01-01

In order to elucidate the global distribution of dioxins and related compounds, such as PCDDs, PCDFs and coplanar PCBs, levels of these compounds were determined in the muscle of skipjack tuna (Katsuwonus pelamis) collected from the offshore waters and open seas near Japan, Taiwan, Philippines, Indonesia, Seychelles and Brazil, and the Japan Sea, the East China Sea, the South China Sea, the Indian Ocean and the North Pacific Ocean. PCDDs, PCDFs and coplanar PCBs were detected in almost all the specimens collected from all the locations surveyed, indicating widespread contamination by these compounds in the marine environment. Higher concentrations of dioxins and coplanar PCBs were detected in the samples from temperate Asian regions, plausibly due to larger usage and anthropogenic generation in highly industrialized countries around the East China Sea and the South China Sea, such as Japan, Korea, Taiwan, Hong Kong and coastal China. - Global pollution monitoring of PCDD/Fs and coplanar PCBs in offshore water and open sea were conducted using skipjack tuna as bioindicator

Training set optimization under population structure in genomic selection.

Science.gov (United States)

Isidro, Julio; Jannink, Jean-Luc; Akdemir, Deniz; Poland, Jesse; Heslot, Nicolas; Sorrells, Mark E

2015-01-01

Population structure must be evaluated before optimization of the training set population. Maximizing the phenotypic variance captured by the training set is important for optimal performance. The optimization of the training set (TRS) in genomic selection has received much interest in both animal and plant breeding, because it is critical to the accuracy of the prediction models. In this study, five different TRS sampling algorithms, stratified sampling, mean of the coefficient of determination (CDmean), mean of predictor error variance (PEVmean), stratified CDmean (StratCDmean) and random sampling, were evaluated for prediction accuracy in the presence of different levels of population structure. In the presence of population structure, the most phenotypic variation captured by a sampling method in the TRS is desirable. The wheat dataset showed mild population structure, and CDmean and stratified CDmean methods showed the highest accuracies for all the traits except for test weight and heading date. The rice dataset had strong population structure and the approach based on stratified sampling showed the highest accuracies for all traits. In general, CDmean minimized the relationship between genotypes in the TRS, maximizing the relationship between TRS and the test set. This makes it suitable as an optimization criterion for long-term selection. Our results indicated that the best selection criterion used to optimize the TRS seems to depend on the interaction of trait architecture and population structure.

Human population structure detection via multilocus genotype clustering

Directory of Open Access Journals (Sweden)

Starmer Joshua

2007-06-01

Full Text Available Abstract Background We describe a hierarchical clustering algorithm for using Single Nucleotide Polymorphism (SNP genetic data to assign individuals to populations. The method does not assume Hardy-Weinberg equilibrium and linkage equilibrium among loci in sample population individuals. Results We show that the algorithm can assign sample individuals highly accurately to their corresponding ethnic groups in our tests using HapMap SNP data and it is also robust to admixed populations when tested with Perlegen SNP data. Moreover, it can detect fine-scale population structure as subtle as that between Chinese and Japanese by using genome-wide high-diversity SNP loci. Conclusion The algorithm provides an alternative approach to the popular STRUCTURE program, especially for fine-scale population structure detection in genome-wide association studies. This is the first successful separation of Chinese and Japanese samples using random SNP loci with high statistical support.

Can schooling regulate marine populations and ecosystems?

Science.gov (United States)

Maury, Olivier

2017-08-01

Schools, shoals and swarms are pervasive in the oceans. They have to provide very strong advantages to have been selected and generalized in the course of evolution. Auto-organized groups are usually assumed to provide facilitated encounters of reproduction partners, improved protection against predation, better foraging efficiency, and hydrodynamic gains. However, present theories regarding their evolutionary advantages do not provide an unambiguous explanation to their universality. In particular, the mechanisms commonly proposed to explain grouping provide little support to the formation of very large groups that are common in the sea (e.g. Rieucau et al., 2014). From literature review, data analysis and using a simple mathematical model, I show that large auto-organized groups appear at high population density while only small groups or dispersed individuals remain at low population density. Following, an analysis of tuna tagging data and simple theoretical developments show that large groups are likely to expose individuals to a dramatic decrease of individual foraging success and simultaneous increase of predatory and disease mortality, while small groups avoid those adverse feedbacks and provide maximum foraging success and protection against predation, as it is usually assumed. This would create an emergent density-dependent regulation of marine populations, preventing them from outbursts at high density, and protecting them at low density. This would be a major contribution to their resilience and a crucial process of ecosystems dynamics. A two-step evolutionary process acting at the individual level is proposed to explain how this apparently suicidal behaviour could have been selected and generalized. It explains how grouping would have permitted the emergence of extremely high fecundity life histories, despite their notorious propensity to destabilize populations. The potential implications of the ;grouping feedback; on population resilience, ecosystem

RAD-seq derived genome-wide nuclear markers resolve the phylogeny of tunas

KAUST Repository

Díaz-Arce, Natalia

2016-06-07

Although species from the genus Thunnus include some of the most commercially important and most severely overexploited fishes, the phylogeny of this genus is still unresolved, hampering evolutionary and traceability studies that could help improve conservation and management strategies for these species. Previous attempts based on mitochondrial and nuclear markers were unsuccessful in inferring a congruent and reliable phylogeny, probably due to mitochondrial introgression events and lack of enough phylogenetically informative markers. Here we infer the first genome-wide nuclear marker-based phylogeny of tunas using restriction site associated DNA sequencing (RAD-seq) data. Our results, derived from phylogenomic inferences obtained from 128 nucleotide matrices constructed using alternative data assembly procedures, support a single Thunnus evolutionary history that challenges previous assumptions based on morphological and molecular data.

Genetic diversity and population structure of Chinese honeybees ...

African Journals Online (AJOL)

Genetic diversity and population structure of Chinese honeybees (Apis cerana) under microsatellite markers. T Ji, L Yin, G Chen. Abstract. Using 21 microsatellite markers and PCR method, the polymorphisms of 20 Apis cerana honeybee populations across China was investigated and the genetic structure and diversity of ...

Arte, cultura y lucha contra el cáncer en Las Tunas

Directory of Open Access Journals (Sweden)

Juan Ernesto Pérez Reyes

2014-08-01

Full Text Available Los avances científicos de hoy están permitiendo que el cáncer no se convierta en una sentencia inexorable de muerte. La cronificación del tratamiento plantea retos a los sistemas sanitarios, en su compromiso por ofrecer al enfermo el apoyo para enfrentar su nueva situación y devolverlo a la vida normal. Las complicaciones producto de los tratamientos, los efectos físicos secundarios, la modificación de las rutinas y el sentir que se vive bajo una amenaza, desestabilizan el balance emocional de muchos enfermos. El arte puede captar los más personales aspectos en la experiencia del cáncer. La creación artística puede unir a pacientes, familiares, amigos, al equipo sanitario y a la comunidad en su conjunto, aportando nuevos caminos para ayudar al paciente. La labor artística puede proveer de otros modos de expresión que no se encuentran en las formas tradicionales de tratamiento, permitiendo explorar temas intrínsecos del enfermo de forma creativa y personal. El arte puede comunicar con los aspectos más silenciados de la enfermedad, ayudando a las personas con escasas posibilidades para confesar sus experiencias. Bajo esta premisa el recientemente fundado capítulo provincial de la Sociedad cubana de oncología, radioterapia y medicina nuclear ha efectuado en Las Tunas varias actividades a partir del día tres de febrero del actual año, comenzando con la inauguración de la Jornada provincial de lucha contra el cáncer. La estrategia divulgativa contó con la colaboración del Grupo provincial para el control del cáncer, el Centro provincial del cine y el proyecto FILOARTMED de la Universidad médica de Las Tunas, quienes se han interesado en elevar la producción científica de los profesionales de la salud, que luchan por controlar el cáncer en el territorio. En la sala cinematográfica Titón del Teatro Tunas, se dieron cita los miembros del capítulo provincial de la Sociedad cubana de oncología, radioterapia y medicina

Molecular Identification of Atlantic Bluefin Tuna (Thunnus thynnus, Scombridae Larvae and Development of a DNA Character-Based Identification Key for Mediterranean Scombrids.

Directory of Open Access Journals (Sweden)

Gregory Neils Puncher

Full Text Available The Atlantic bluefin tuna, Thunnus thynnus, is a commercially important species that has been severely over-exploited in the recent past. Although the eastern Atlantic and Mediterranean stock is now showing signs of recovery, its current status remains very uncertain and as a consequence their recovery is dependent upon severe management informed by rigorous scientific research. Monitoring of early life history stages can inform decision makers about the health of the species based upon recruitment and survival rates. Misidentification of fish larvae and eggs can lead to inaccurate estimates of stock biomass and productivity which can trigger demands for increased quotas and unsound management conclusions. Herein we used a molecular approach employing mitochondrial and nuclear genes (CO1 and ITS1, respectively to identify larvae (n = 188 collected from three spawning areas in the Mediterranean Sea by different institutions working with a regional fisheries management organization. Several techniques were used to analyze the genetic sequences (sequence alignments using search algorithms, neighbour joining trees, and a genetic character-based identification key and an extensive comparison of the results is presented. During this process various inaccuracies in related publications and online databases were uncovered. Our results reveal important differences in the accuracy of the taxonomic identifications carried out by different ichthyoplanktologists following morphology-based methods. While less than half of larvae provided were bluefin tuna, other dominant taxa were bullet tuna (Auxis rochei, albacore (Thunnus alalunga and little tunny (Euthynnus alletteratus. We advocate an expansion of expertise for a new generation of morphology-based taxonomists, increased dialogue between morphology-based and molecular taxonomists and increased scrutiny of public sequence databases.

Using stable isotopes of albacore tuna and predictive models to characterize bioregions and examine ecological change in the SW Pacific Ocean

Science.gov (United States)

Pethybridge, Heidi R.; Young, Jock W.; Kuhnert, Petra M.; Farley, Jessica H.

2015-05-01

Broad-scale food web inferences of 534 albacore tuna, Thunnus alalunga, in the south-west Pacific Ocean in 2009 and 2010 were made using bulk nitrogen (δ15N) and carbon (δ13C) stable isotopes. Condition was also examined for the same fish using C:N ratios. A Generalized Additive Modeling (GAM) approach was used to analyze spatio-temporal, biological and environmental drivers that impact the distribution of tuna isotopes and to create oceanographic maps. Based on model formulations, five bioregions with distinct isotopic signatures were identified and were related to known biological, nutrient cycling and oceanographic (temperature, primary productivity and eddy) features associated with the East Australian Current. δ15N values showed a large-scale, uniform latitudinal gradient decreasing from the south to north, in a region encompassing oligotrophic waters in the Coral Sea. In contrast, δ13C values were lower in the nutrient rich Tasman Sea waters and offshore East Australia. C:N ratios suggested that albacore occupying southern and offshore waters were in better condition. Ontogenetic trends in all three biochemical parameters were identified and related to differences in size distribution. Regional-specific temporal variations were detected including similar monthly changes for both isotopes and significantly less enriched δ13C (by 1.9‰) than in previous work undertaken in 2006, potentially signifying a substantial shift in the carbon cycle that supports food webs off central east Australia. Our results showed that isotopic measurements in tuna and the GAM framework provide powerful tools to assess ecosystem functioning and change by linking sources of nutrients and organic matter to local food web assembly. Such knowledge is vital to support an ecosystem based approach to fisheries management including biogeochemical whole-of-ecosystem models and monitoring programs at regional and landscape-scales.

Chemical composition of protein concentrate prepared from Yellowfin tuna Thunnus albacares roe by cook-dried process

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Hyun Ji Lee

2016-05-01

Full Text Available Abstract Roe is the term used to describe fish eggs (oocytes gathered in skeins and is one of the most valuable food products from fishery sources. Thus, means of processing are required to convert the underutilized yellowfin tuna roes (YTR into more marketable and acceptable forms as protein concentrate. Roe protein concentrates (RPCs were prepared by cooking condition (boil-dried concentrate, BDC and steam-dried concentrate, SDC, respectively and un-cooking condition (freeze-dried concentrate, FDC from yellowfin tuna roe. The yield of RPCs was in the range from 22.2 to 25.3 g/100 g of roe. RPCs contained protein (72.3–77.3 %, moisture (4.3–5.6 %, lipid (10.6–11.3 % and ash (4.3–5.7 % as the major constituents. The prominent amino acids of RPCs were aspartic acid, 8.7–9.2, glutamic acid, 13.1–13.2, and leucine, 8.5–8.6 g/100 g of protein. Major differences were not observed in each of the amino acid. K, S, Na, and P as minerals were the major elements in RPCs. No difference noted in sodium dodecyl sulfate polyacrylamide gel electrophoresis protein band (15–100 K possibly representing partial hydrolysis of myosin. Therefore, RPCs from YTR could be use potential protein ingredient for human food and animal feeds.

Competition in size-structured populations: mechanisms inducing cohort formation and population cycles

NARCIS (Netherlands)

de Roos, A.M.; Persson, L.

2003-01-01

In this paper we investigate the consequences of size-dependent competition among the individuals of a consumer population by analyzing the dynamic properties of a physiologically structured population model. Only 2 size-classes of individuals are distinguished: juveniles and adults. Juveniles and

Fairness and Trust in Structured Populations

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Corina E. Tarnita

2015-07-01

Full Text Available Classical economic theory assumes that people are rational and selfish, but behavioral experiments often point to inconsistent behavior, typically attributed to “other regarding preferences.” The Ultimatum Game, used to study fairness, and the Trust Game, used to study trust and trustworthiness, have been two of the most influential and well-studied examples of inconsistent behavior. Recently, evolutionary biologists have attempted to explain the evolution of such preferences using evolutionary game theoretic models. While deterministic evolutionary game theoretic models agree with the classical economics predictions, recent stochastic approaches that include uncertainty and the possibility of mistakes have been successful in accounting for both the evolution of fairness and the evolution of trust. Here I explore the role of population structure by generalizing and expanding these existing results to the case of non-random interactions. This is a natural extension since such interactions do not occur randomly in the daily lives of individuals. I find that, in the limit of weak selection, population structure increases the space of fair strategies that are selected for but it has little-to-no effect on the optimum strategy played in the Ultimatum Game. In the Trust Game, in the limit of weak selection, I find that some amount of trust and trustworthiness can evolve even in a well-mixed population; however, the optimal strategy, although trusting if the return on investment is sufficiently high, is never trustworthy. Population structure biases selection towards strategies that are both trusting and trustworthy trustworthy and reduces the critical return threshold, but, much like in the case of fairness, it does not affect the winning strategy. Further considering the effects of reputation and structure, I find that they act synergistically to promote the evolution of trustworthiness.

Plasmodium vivax Diversity and Population Structure across Four Continents.

Science.gov (United States)

Koepfli, Cristian; Rodrigues, Priscila T; Antao, Tiago; Orjuela-Sánchez, Pamela; Van den Eede, Peter; Gamboa, Dionicia; van Hong, Nguyen; Bendezu, Jorge; Erhart, Annette; Barnadas, Céline; Ratsimbasoa, Arsène; Menard, Didier; Severini, Carlo; Menegon, Michela; Nour, Bakri Y M; Karunaweera, Nadira; Mueller, Ivo; Ferreira, Marcelo U; Felger, Ingrid

2015-01-01

Plasmodium vivax is the geographically most widespread human malaria parasite. To analyze patterns of microsatellite diversity and population structure across countries of different transmission intensity, genotyping data from 11 microsatellite markers was either generated or compiled from 841 isolates from four continents collected in 1999-2008. Diversity was highest in South-East Asia (mean allelic richness 10.0-12.8), intermediate in the South Pacific (8.1-9.9) Madagascar and Sudan (7.9-8.4), and lowest in South America and Central Asia (5.5-7.2). A reduced panel of only 3 markers was sufficient to identify approx. 90% of all haplotypes in South Pacific, African and SE-Asian populations, but only 60-80% in Latin American populations, suggesting that typing of 2-6 markers, depending on the level of endemicity, is sufficient for epidemiological studies. Clustering analysis showed distinct clusters in Peru and Brazil, but little sub-structuring was observed within Africa, SE-Asia or the South Pacific. Isolates from Uzbekistan were exceptional, as a near-clonal parasite population was observed that was clearly separated from all other populations (FST>0.2). Outside Central Asia FST values were highest (0.11-0.16) between South American and all other populations, and lowest (0.04-0.07) between populations from South-East Asia and the South Pacific. These comparisons between P. vivax populations from four continents indicated that not only transmission intensity, but also geographical isolation affect diversity and population structure. However, the high effective population size results in slow changes of these parameters. This persistency must be taken into account when assessing the impact of control programs on the genetic structure of parasite populations.

Population structure of Han nationality in Central-Southern China.

Science.gov (United States)

Liu, Qiu-Ling; Chen, Ye-Fei; He, Xin; Shi, Yan-Wei; Wu, Wei-Wei; Zhao, Hu; Lu, De-Jian

2017-07-01

Knowledge of population structure is very important for forensic genetics. However, the population substructure in Central-Southern China Han nationality has still not been fully described. In this study, we investigated the genetic diversity of 15 forensic autosomal STR loci from 6879 individuals in 12 Han populations subdivided by administrative provinces in Central-Southern China. The statistical analysis of genetic variation showed that genetic differentiation among these populations was very small with a F st value of 0.0009. The Discriminant Analysis of Principal Components (DAPC) showed that there were no obvious population clusters in Central-Southern China Han population. In practice, the population structure effect in Central-Southern China Han population can be negligible in forensic identification and paternity testing. Copyright © 2017. Published by Elsevier B.V.

Reconstruction of spatiotemporal capture data by means of orthogonal functions: the case of skipjack tuna (Katsuwonus pelamis in the central-east Atlantic

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Unai Ganzedo

2013-10-01

Full Text Available The information provided by the International Commission for the Conservation of Atlantic Tunas (ICCAT on captures of skipjack tuna (Katsuwonus pelamis in the central-east Atlantic has a number of limitations, such as gaps in the statistics for certain fleets and the level of spatiotemporal detail at which catches are reported. As a result, the quality of these data and their effectiveness for providing management advice is limited. In order to reconstruct missing spatiotemporal data of catches, the present study uses Data INterpolating Empirical Orthogonal Functions (DINEOF, a technique for missing data reconstruction, applied here for the first time to fisheries data. DINEOF is based on an Empirical Orthogonal Functions decomposition performed with a Lanczos method. DINEOF was tested with different amounts of missing data, intentionally removing values from 3.4% to 95.2% of data loss, and then compared with the same data set with no missing data. These validation analyses show that DINEOF is a reliable methodological approach of data reconstruction for the purposes of fishery management advice, even when the amount of missing data is very high.

Population structure and genetic diversity of native and invasive populations of Solanum rostratum (Solanaceae.

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Jiali Zhao

Full Text Available We investigate native and introduced populations of Solanum rostratum, an annual, self-compatible plant that has been introduced around the globe. This study is the first to compare the genetic diversity of Solanum rostratum between native and introduced populations. We aim to (1 determine the level of genetic diversity across the studied regions; (2 explore the likely origins of invasive populations in China; and (3 investigate whether there is the evidence of multiple introductions into China.We genotyped 329 individuals at 10 microsatellite loci to determine the levels of genetic diversity and to investigate population structure of native and introduced populations of S. rostratum. We studied five populations in each of three regions across two continents: Mexico, the U.S.A. and China.We found the highest genetic diversity among Mexican populations of S. rostratum. Genetic diversity was significantly lower in Chinese and U.S.A. populations, but we found no regional difference in inbreeding coefficients (F IS or population differentiation (F ST. Population structure analyses indicate that Chinese and U.S.A. populations are more closely related to each other than to sampled Mexican populations, revealing that introduced populations in China share an origin with the sampled U.S.A. populations. The distinctiveness between some introduced populations indicates multiple introductions of S. rostratum into China.

Genetic diversity and population structure of sweet cassava using ...

African Journals Online (AJOL)

The objective of this study was to evaluate the population structure and genetic diversity among 66 sweet cassava (Manihot esculenta Crantz) traditional accessions collected in Maringa, Parana, Brazil, using microsatellite molecular markers. Population structure was analyzed by means of genetic distances and ...

Population genetic structure in wild and aquaculture populations of Hemibarbus maculates inferred from microsatellites markers

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Linlin Li

2017-03-01

Full Text Available The objective of this study was to investigate 4 aquaculture populations Shanghai (SH, Hangzhou (HZ, Kaihua (KH and Xianju (XJ and one wild population Yingshan (YS of spotted barbell (Hemibarbus maculates to assess their genetic diversity level and investigate the genetic structure of the populations. The dendrogram and STRUCTURE revealed that the populations XJ, KH, and HZ jointly formed one cluster, to which the populations SH and YS were sequentially adhered. The genetic diversity of the cultured populations maintained better, possible due to favourable hatchery conditions that decreased the effect of environmental selection present in wild populations. The results of the present study will contribute to the management of spotted barbell genetic resources, but also demonstrates how the genetic diversity of freshwater species is vulnerable to human activity.

Benitez Bustamante, Carmen MatildeEstudio de factibilidad para la creación de una empresa dedicada a la producción y comercialización de mermelada y jugo de tuna para el mercado exterior.

OpenAIRE

Benitez Bustamante, Carmen Matilde

2010-01-01

El presente proyecto consiste en la realización de un estudio de prefactibilidad para verificar la viabilidad de la creación de una empresa dedicada a la producción y comercialización de mermelada y jugo de tuna para el mercado exterior. Se desarrollaron los estudios de mercado, técnico, organizacional y financiero. La empresa llevará el nombre de ECUATUNA Cía. Ltda., y producirá mermelada y jugo de tuna; cuyos nombres comunes serán: cactus jam y juice jam, respectivamente. Y el nombre com...

A general modeling framework for describing spatially structured population dynamics

Science.gov (United States)

Sample, Christine; Fryxell, John; Bieri, Joanna; Federico, Paula; Earl, Julia; Wiederholt, Ruscena; Mattsson, Brady; Flockhart, Tyler; Nicol, Sam; Diffendorfer, James E.; Thogmartin, Wayne E.; Erickson, Richard A.; Norris, D. Ryan

2017-01-01

Variation in movement across time and space fundamentally shapes the abundance and distribution of populations. Although a variety of approaches model structured population dynamics, they are limited to specific types of spatially structured populations and lack a unifying framework. Here, we propose a unified network-based framework sufficiently novel in its flexibility to capture a wide variety of spatiotemporal processes including metapopulations and a range of migratory patterns. It can accommodate different kinds of age structures, forms of population growth, dispersal, nomadism and migration, and alternative life-history strategies. Our objective was to link three general elements common to all spatially structured populations (space, time and movement) under a single mathematical framework. To do this, we adopt a network modeling approach. The spatial structure of a population is represented by a weighted and directed network. Each node and each edge has a set of attributes which vary through time. The dynamics of our network-based population is modeled with discrete time steps. Using both theoretical and real-world examples, we show how common elements recur across species with disparate movement strategies and how they can be combined under a unified mathematical framework. We illustrate how metapopulations, various migratory patterns, and nomadism can be represented with this modeling approach. We also apply our network-based framework to four organisms spanning a wide range of life histories, movement patterns, and carrying capacities. General computer code to implement our framework is provided, which can be applied to almost any spatially structured population. This framework contributes to our theoretical understanding of population dynamics and has practical management applications, including understanding the impact of perturbations on population size, distribution, and movement patterns. By working within a common framework, there is less chance

Effects of demographic structure on key properties of stochastic density-independent population dynamics.

Science.gov (United States)

Vindenes, Yngvild; Sæther, Bernt-Erik; Engen, Steinar

2012-12-01

The development of stochastic demography has largely been based on age structured populations, although other types of demographic structure, especially permanent and dynamic heterogeneity, are likely common in natural populations. The combination of stochasticity and demographic structure is a challenge for analyses of population dynamics and extinction risk, because the population structure will fluctuate around the stable structure and the population size shows transient fluctuations. However, by using a diffusion approximation for the total reproductive value, density-independent dynamics of structured populations can be described with only three population parameters: the expected population growth rate, the environmental variance and the demographic variance. These parameters depend on population structure via the state-specific vital rates and transition rates. Once they are found, the diffusion approximation represents a substantial reduction in model complexity. Here, we review and compare the key population parameters across a wide range of demographic structure, from the case of no structure to the most general case of dynamic heterogeneity, and for both discrete and continuous types. We focus on the demographic variance, but also show how environmental stochasticity can be included. This study brings together results from recent models, each considering a specific type of population structure, and places them in a general framework for structured populations. Comparison across different types of demographic structure reveals that the reproductive value is an essential concept for understanding how population structure affects stochastic dynamics and extinction risk. Copyright © 2011 Elsevier Inc. All rights reserved.

Coexistence of competing stage-structured populations.

KAUST Repository

Fujiwara, Masami

2011-10-05

This paper analyzes the stability of a coexistence equilibrium point of a model for competition between two stage-structured populations. In this model, for each population, competition for resources may affect any one of the following population parameters: reproduction, juvenile survival, maturation rate, or adult survival. The results show that the competitive strength of a population is affected by (1) the ratio of the population parameter influenced by competition under no resource limitation (maximum compensatory capacity) over the same parameter under a resource limitation due to competition (equilibrium rate) and (2) the ratio of interspecific competition over intraspecific competition; this ratio was previously shown to depend on resource-use overlap. The former ratio, which we define as fitness, can be equalized by adjusting organisms\\' life history strategies, thereby promoting coexistence. We conclude that in addition to niche differentiation among populations, the life history strategies of organisms play an important role in coexistence.

Génesis de la medicina familiar en Las Tunas

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Maritza Rodríguez Peña

2014-08-01

Full Text Available Se realizó una investigación desde los presupuestos de la historia social integral, con el objetivo de analizar momentos importantes de la historia de la medicina familiar en la localidad de Las Tunas. Para la investigación se consultaron diversas fuentes documentales, orales, iconográficas, patrimoniales y bibliográficas, entre ellas la obra de los historiadores de la ciudad y del Ministerio de Salud Pública, así como resultados científicos de proyectos de investigación. Los métodos empleados partieron de la observación, el análisis histórico-lógico, la síntesis, la inducción y la deducción de la información, que permitieron la sistematización y determinación de los momentos más importantes de este proceso desde su origen en la comunidad primitiva, transitando por diferentes etapas hasta 1984, con la puesta en práctica del Programa del Médico y la Enfermera de la Familia, para el fortalecimiento de la atención primaria de salud, con marcado acento preventivo

Pseudomonas aeruginosa Population Structure Revisited

Science.gov (United States)

Pirnay, Jean-Paul; Bilocq, Florence; Pot, Bruno; Cornelis, Pierre; Zizi, Martin; Van Eldere, Johan; Deschaght, Pieter; Vaneechoutte, Mario; Jennes, Serge; Pitt, Tyrone; De Vos, Daniel

2009-01-01

At present there are strong indications that Pseudomonas aeruginosa exhibits an epidemic population structure; clinical isolates are indistinguishable from environmental isolates, and they do not exhibit a specific (disease) habitat selection. However, some important issues, such as the worldwide emergence of highly transmissible P. aeruginosa clones among cystic fibrosis (CF) patients and the spread and persistence of multidrug resistant (MDR) strains in hospital wards with high antibiotic pressure, remain contentious. To further investigate the population structure of P. aeruginosa, eight parameters were analyzed and combined for 328 unrelated isolates, collected over the last 125 years from 69 localities in 30 countries on five continents, from diverse clinical (human and animal) and environmental habitats. The analysed parameters were: i) O serotype, ii) Fluorescent Amplified-Fragment Length Polymorphism (FALFP) pattern, nucleotide sequences of outer membrane protein genes, iii) oprI, iv) oprL, v) oprD, vi) pyoverdine receptor gene profile (fpvA type and fpvB prevalence), and prevalence of vii) exoenzyme genes exoS and exoU and viii) group I pilin glycosyltransferase gene tfpO. These traits were combined and analysed using biological data analysis software and visualized in the form of a minimum spanning tree (MST). We revealed a network of relationships between all analyzed parameters and non-congruence between experiments. At the same time we observed several conserved clones, characterized by an almost identical data set. These observations confirm the nonclonal epidemic population structure of P. aeruginosa, a superficially clonal structure with frequent recombinations, in which occasionally highly successful epidemic clones arise. One of these clones is the renown and widespread MDR serotype O12 clone. On the other hand, we found no evidence for a widespread CF transmissible clone. All but one of the 43 analysed CF strains belonged to a ubiquitous P

Population Structure Analysis of Bull Genomes of European and Western Ancestry

DEFF Research Database (Denmark)

Chung, Neo Christopher; Szyda, Joanna; Frąszczak, Magdalena

2017-01-01

Since domestication, population bottlenecks, breed formation, and selective breeding have radically shaped the genealogy and genetics of Bos taurus. In turn, characterization of population structure among diverse bull (males of Bos taurus) genomes enables detailed assessment of genetic resources...... and origins. By analyzing 432 unrelated bull genomes from 13 breeds and 16 countries, we demonstrate genetic diversity and structural complexity among the European/Western cattle population. Importantly, we relaxed a strong assumption of discrete or admixed population, by adapting latent variable models...... harboring largest genetic differentiation suggest positive selection underlying population structure. We carried out gene set analysis using SNP annotations to identify enriched functional categories such as energy-related processes and multiple development stages. Our population structure analysis of bull...

The oxidative stability of chilled and frozen pilchards used as feed for captive southern bluefin tuna

DEFF Research Database (Denmark)

Fitz-Gerald, C.H.; Bremner, Allan

1998-01-01

. Vacuum packaging in a film of low permeability to oxygen was less effective than glazing and is not recommended due to cost. Pilchards in which oxidation had commenced before freezing continued to oxidise in frozen storage irrespective of whether they were glazed or vacuum packed. It was thus thoroughly...... demonstrated that the oil in the pilchards is very readily oxidised and careful handling, chilling, freezing and storage procedures need to be adopted to provide a product which is a nutritionally sound feed material for captive tuna. The demerit point scoring system was found to be a rapid evaluative...

15 CFR 50.10 - Fee structure for special population censuses.

Science.gov (United States)

2010-01-01

... 15 Commerce and Foreign Trade 1 2010-01-01 2010-01-01 false Fee structure for special population... § 50.10 Fee structure for special population censuses. The Bureau of the Census is authorized to conduct special population censuses at the request of and at the expense of the community concerned. To...

Population structure age of Paraná state between 1970 and 2010

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Eduardo de Pintor

2014-06-01

Full Text Available The theory of demographic transition began with an effort of Frank Notestein (1945 to understand the demographic changes that were occurring in Western Europe since the late nineteenth century. The demographic transition is the transition between two scenarios of population growth, which changes the age structure of the population. The aim of the article is to discuss the evolution of population structure age of Paraná state between 1970 and 2010. The changes in the age structure of the Paraná indicate a reduction in the share of young population and increasing aging population, an increase in the relative weight of the elderly population. Public policies on education, health, social security and labor market should consider the current change in the age structure. Thus, the aim of this study was to analyze the change in the age structure of the population of the state of Paraná. For this we used data Censuses of the Brazilian Institute of Geography and Statistics (IBGE on the age distribution of urban and rural Paraná and its Mesoregions. It was concluded that the change in structure occurs group widespread in all Mesoregions state. However, it occurs unevenly between urban and rural population.

Amino Acid Isotope Incorporation and Enrichment Factors in Pacific Bluefin Tuna, Thunnus orientalis

Science.gov (United States)

Bradley, Christina J.; Madigan, Daniel J.; Block, Barbara A.; Popp, Brian N.

2014-01-01

Compound specific isotopic analysis (CSIA) of amino acids has received increasing attention in ecological studies in recent years due to its ability to evaluate trophic positions and elucidate baseline nutrient sources. However, the incorporation rates of individual amino acids into protein and specific trophic discrimination factors (TDFs) are largely unknown, limiting the application of CSIA to trophic studies. We determined nitrogen turnover rates of individual amino acids from a long-term (up to 1054 days) laboratory experiment using captive Pacific bluefin tuna, Thunnus orientalis (PBFT), a large endothermic pelagic fish fed a controlled diet. Small PBFT (white muscle δ15N∼11.5‰) were collected in San Diego, CA and transported to the Tuna Research and Conservation Center (TRCC) where they were fed a controlled diet with high δ15N values relative to PBFT white muscle (diet δ15N∼13.9‰). Half-lives of trophic and source amino acids ranged from 28.6 to 305.4 days and 67.5 to 136.2 days, respectively. The TDF for the weighted mean values of amino acids was 3.0 ‰, ranging from 2.2 to 15.8 ‰ for individual combinations of 6 trophic and 5 source amino acids. Changes in the δ15N values of amino acids across trophic levels are the underlying drivers of the trophic 15N enrichment. Nearly all amino acid δ15N values in this experiment changed exponentially and could be described by a single compartment model. Significant differences in the rate of 15N incorporation were found for source and trophic amino acids both within and between these groups. Varying half-lives of individual amino acids can be applied to migratory organisms as isotopic clocks, determining the length of time an individual has spent in a new environment. These results greatly enhance the ability to interpret compound specific isotope analyses in trophic studies. PMID:24465724

Assessing population genetic structure via the maximisation of genetic distance

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Toro Miguel A

2009-11-01

Full Text Available Abstract Background The inference of the hidden structure of a population is an essential issue in population genetics. Recently, several methods have been proposed to infer population structure in population genetics. Methods In this study, a new method to infer the number of clusters and to assign individuals to the inferred populations is proposed. This approach does not make any assumption on Hardy-Weinberg and linkage equilibrium. The implemented criterion is the maximisation (via a simulated annealing algorithm of the averaged genetic distance between a predefined number of clusters. The performance of this method is compared with two Bayesian approaches: STRUCTURE and BAPS, using simulated data and also a real human data set. Results The simulations show that with a reduced number of markers, BAPS overestimates the number of clusters and presents a reduced proportion of correct groupings. The accuracy of the new method is approximately the same as for STRUCTURE. Also, in Hardy-Weinberg and linkage disequilibrium cases, BAPS performs incorrectly. In these situations, STRUCTURE and the new method show an equivalent behaviour with respect to the number of inferred clusters, although the proportion of correct groupings is slightly better with the new method. Re-establishing equilibrium with the randomisation procedures improves the precision of the Bayesian approaches. All methods have a good precision for FST ≥ 0.03, but only STRUCTURE estimates the correct number of clusters for FST as low as 0.01. In situations with a high number of clusters or a more complex population structure, MGD performs better than STRUCTURE and BAPS. The results for a human data set analysed with the new method are congruent with the geographical regions previously found. Conclusion This new method used to infer the hidden structure in a population, based on the maximisation of the genetic distance and not taking into consideration any assumption about Hardy

Evaluating alternative management strategies for bigeye tuna, Thunnus obesus, in the Indian Ocean

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Yuhe Tong

2013-09-01

Full Text Available Bigeye tuna (Thunnus obesus support a large commercial fishery in the Indian Ocean. However, explicit management strategies and harvest control rules are yet to be developed for the management of this fishery. We used a stochastic age-structured production model as an operating model to evaluate several potential management strategies under different assumptions of stock productivity. Five management strategies—constant fishing mortality, constant catch, quasi-constant catch, constant escapement, and status-dependent strategies—were evaluated and compared using the performance indicators including average catch, average spawning stock biomass, variation in catch, average fishing mortality and lowest biomass during the time period considered in the simulation. This study shows that (1 for the constant catch strategy, an annual catch of 90000 t would result in a low risk of stock being overfished while obtaining a stable catch; (2 for the constant fishing mortality strategy fishing mortality of 0.3 per year could yield a higher catch, but might have a high probability (64% of stock dropping below the spawning stock biomass (SSB that could achieve maximum sustainable yield (SSBmsy; and (3 for the quasi-constant catch strategy an annual catch of 110000 t was sustainable if the current SSB was higher than SSBmsy. Constant escapement and status-dependent strategies were robust with respect to different levels of virgin recruitment and steepness. This study suggests that it is important to incorporate uncertainties associated with key life history, fisheries and management processes in evaluating management strategies.

Distribution and population structure of North Atlantic harbour seals (Phoca vitulina

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Liselotte Andersen

2010-09-01

Full Text Available A review of the known geographical distribution and current knowledge on the genetic population structure of harbour seals (Phoca vitulina in the North Atlantic is presented. Based on a synthesis of the results fromfive different studies of neutral geneticmarkers (mtDNAand nuclear microsatellites, mainly twelve genetically distinct populations were identified in the North Atlantic: USA/Canada, Iceland, west coast of Norway, Ireland-Scotland, English east coast, Channel area, Wadden Sea, Limfjord, Skagerrak, Kattegat, West Baltic, and East Baltic. Most of the studies addressed the population structure at the regional level, while only a few addressed the structuring at a local level, i.e. within countries. Due to the limited number of studies conducted, the identified population units were considered preliminary andmore detailed, local studieswould probably reveal structuring on a finer scale. The choice of genetic markers, their properties, resolution in time and applicability in population structure studies is shortly discussed and compared to ecological methods used to delineate populations.

Population genetic structure in natural and reintroduced beaver (Castor fiber populations in Central Europe

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Kautenburger, R.

2008-12-01

Full Text Available Castor fiber Linnaeus, 1758 is the only indigenous species of the genus Castor in Europe and Asia. Due to extensive hunting until the beginning of the 20th century, the distribution of the formerly widespread Eurasian beaver was dramatically reduced. Only a few populations remained and these were in isolated locations, such as the region of the German Elbe River. The loss of genetic diversity in small or captive populations throughgenetic drift and inbreeding is a severe conservation problem. However, the reintroduction of beaver populations from several regions in Europe has shown high viability and populations today are growing fast. In the present study we analysed the population genetic structure of a natural and two reintroduced beaver populations in Germany and Austria. Furthermore, we studied the genetic differentiation between two beaver species, C. fiber and the American beaver (C. canadensis, using RAPD (Random Amplified Polymorphic DNA as a genetic marker. The reintroduced beaver populations of different origins and the autochthonous population of the Elbe River showed a similar low genetic heterogeneity. There was an overall high genetic similarity in the species C. fiber, and no evidence was found for a clear subspecific structure in the populations studied.

Relationships between tuna catch and variable frequency oceanographic conditions

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F. I. Ormaza-González

2016-08-01

Full Text Available Skipjack (Katsuwunus pelamis, yellow fin (Thunnus albacares and albacore (Thunnus alulunga tunas landed in the Eastern Pacific Ocean (EPO countries and Ecuador were correlated to the Indexes Oceanic El Niño (ONI and Multivariate Enso Index (MEI. The temporal series 1983–2012, and 1977–1999 (warm Pacific Decadal Oscillation, PDO, and 2000–2012 (cold PDO were analyzed. Linear correlation showed that at least 11 % of the total landings were associated with the MEI, with a slightly negative gradient from cold to warm conditions. When non-linear regression (n  =  6, the R2 was higher up to 0.304 (MEI, r =  0.551. The correlation shows high spread from −0.5 to +0.5 for both MEI/ONI; the highest landings occurred at 0.34–0.45; both indexes suggested that at extreme values < −1.0 and > 1.1 total landings tend to decrease. Landings were associated up to 21.9 % (MEI in 2000–2012, 1983–1999 rendered lower R2 (< 0.09; i.e., during cold PDO periods there was a higher association between landings and oceanographic conditions. For the non-linear regression (n  =  6 a R2 of 0.374 (MEI and 0.408 (ONI were registered, for the 2000–2012, a higher R2 was observed in 1983–1999, 0.443 and 0.711 for MEI and ONI respectively, suggesting that is better to analyze split series (1983–1999, 2000–2012 than as a whole (1983–2012, due to noise produced by the transition from hot to cold PDOs. The highest landings were in the range −0.2 to 0.5 for MEI/ONI. The linear regression of skipjack landings in Ecuador gave an R2 of 0.140 (MEI and 0.066 (ONI and the non-linear were 0.440 and 0.183 respectively. Total landings in the EPO associated to oceanographic events of high and low frequencies could be used somehow as predictors of the high El Niño o La Niña. There is a clear evidence that tuna fish biomass are at higher levels when the PDO is on cold phase (2000–2030 and vice versa on warm phase (1980–1999. The

Effect of Population Structure Change on Carbon Emission in China

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Wen Guo

2016-03-01

Full Text Available This paper expanded the Logarithmic Mean Divisia Index (LMDI model through the introduction of urbanization, residents’ consumption, and other factors, and decomposed carbon emission changes in China into carbon emission factor effect, energy intensity effect, consumption inhibitory factor effect, urbanization effect, residents’ consumption effect, and population scale effect, and then explored contribution rates and action mechanisms of the above six factors on change in carbon emissions in China. Then, the effect of population structure change on carbon emission was analyzed by taking 2003–2012 as a sample period, and combining this with the panel data of 30 provinces in China. Results showed that in 2003–2012, total carbon emission increased by 4.2117 billion tons in China. The consumption inhibitory factor effect, urbanization effect, residents’ consumption effect, and population scale effect promoted the increase in carbon emissions, and their contribution ratios were 27.44%, 12.700%, 74.96%, and 5.90%, respectively. However, the influence of carbon emission factor effect (−2.54% and energy intensity effect (−18.46% on carbon emissions were negative. Population urbanization has become the main population factor which affects carbon emission in China. The “Eastern aggregation” phenomenon caused the population scale effect in the eastern area to be significantly higher than in the central and western regions, but the contribution rate of its energy intensity effect (−11.10 million tons was significantly smaller than in the central (−21.61 million tons and western regions (−13.29 million tons, and the carbon emission factor effect in the central area (−3.33 million tons was significantly higher than that in the eastern (−2.00 million tons and western regions (−1.08 million tons. During the sample period, the change in population age structure, population education structure, and population occupation structure

Modeling structured population dynamics using data from unmarked individuals

Science.gov (United States)

Grant, Evan H. Campbell; Zipkin, Elise; Thorson, James T.; See, Kevin; Lynch, Heather J.; Kanno, Yoichiro; Chandler, Richard; Letcher, Benjamin H.; Royle, J. Andrew

2014-01-01

The study of population dynamics requires unbiased, precise estimates of abundance and vital rates that account for the demographic structure inherent in all wildlife and plant populations. Traditionally, these estimates have only been available through approaches that rely on intensive mark–recapture data. We extended recently developed N-mixture models to demonstrate how demographic parameters and abundance can be estimated for structured populations using only stage-structured count data. Our modeling framework can be used to make reliable inferences on abundance as well as recruitment, immigration, stage-specific survival, and detection rates during sampling. We present a range of simulations to illustrate the data requirements, including the number of years and locations necessary for accurate and precise parameter estimates. We apply our modeling framework to a population of northern dusky salamanders (Desmognathus fuscus) in the mid-Atlantic region (USA) and find that the population is unexpectedly declining. Our approach represents a valuable advance in the estimation of population dynamics using multistate data from unmarked individuals and should additionally be useful in the development of integrated models that combine data from intensive (e.g., mark–recapture) and extensive (e.g., counts) data sources.

Standardization of a geo-referenced fishing data set for the Indian Ocean bigeye tuna, Thunnus obesus (1952-2014)

Science.gov (United States)

Wibawa, Teja A.; Lehodey, Patrick; Senina, Inna

2017-02-01

Geo-referenced catch and fishing effort data of the bigeye tuna fisheries in the Indian Ocean over 1952-2014 were analyzed and standardized to facilitate population dynamics modeling studies. During this 62-year historical period of exploitation, many changes occurred both in the fishing techniques and the monitoring of activity. This study includes a series of processing steps used for standardization of spatial resolution, conversion and standardization of catch and effort units, raising of geo-referenced catch into nominal catch level, screening and correction of outliers, and detection of major catchability changes over long time series of fishing data, i.e., the Japanese longline fleet operating in the tropical Indian Ocean. A total of 30 fisheries were finally determined from longline, purse seine and other-gears data sets, from which 10 longline and 4 purse seine fisheries represented 96 % of the whole historical geo-referenced catch. Nevertheless, one-third of total nominal catch is still not included due to a total lack of geo-referenced information and would need to be processed separately, accordingly to the requirements of the study. The geo-referenced records of catch, fishing effort and associated length frequency samples of all fisheries are available at PANGAEA.864154" target="_blank">doi:10.1594/PANGAEA.864154.

Phytophthora infestans population structure: A worldwide scale

International Nuclear Information System (INIS)

Cardenas, Martha; Danies, Giovanna; Tabima, Javier; Bernal, Adriana; Restrepo, Silvia

2012-01-01

Phytophthora infestans, the causal agent of late blight disease in potato and other members of the Solanaceae family, is responsible for causing the Irish potato famine and, even today, it causes enormous economic losses all over the world. For the establishment of an adequate pest management strategy, the determination of the pathogen's population structure is required. To characterize P. infestans populations worldwide two allozymes, Gpi (Glucose-6-phospate isomerase) and Pep (Pep tidase), the RG57 DNA RFLP fingerprinting probe, as well as resistance to the fungicide metalaxyl and mating type, have been used as markers. P. infestans populations in Mexico have been one of the main focuses of research in the population biology of this pathogen because this country has been considered as one of the possible centers of origin of this oomycete. In this review we present the population structure of P. infestans in Mexico, Europe, Africa, Asia, North America, and South America, expanding it on the present situation of P. infestans in Colombia. Finally, we will discuss different lines of research that are being carried out today with respect to P. infestans in Colombia, which have shown the importance of continuing the study of this devastating plant pathogen in our country.

Phytophthora infestans population structure: a worldwide scale

Directory of Open Access Journals (Sweden)

Martha Cárdenas Toquica

2012-05-01

Full Text Available Phytophthora infestans, the causal agent of late blight disease in potato and other members of the Solanaceae family, is responsible for causing the Irish potato famine and, even today, it causes enormous economic losses all over the world. For the establishment of an adequate pest management strategy, the determination of population structure is required. To characterize P. infestans populations worldwide two allozymes, Gpi (Glucose-6-phospate isomerase and Pep (Peptidase, the RG57 DNA RFLP fingerprinting probe, as well as resistance to the fungicide metalaxyl and the mating type, have been used as markers. P. infestans populations in Mexico have been one of the main focuses of research in the population biology of this pathogen because this country has been considered as one of the possible centers of origin of this oomycete. In this review we present the population structure of P. infestans in Mexico, Europe, Africa, Asia, North America, and South America expanding on the present situation of P. infestans in Colombia. Finally, we will discuss different lines of research that are being carried out today with respect to P. infestans in Colombia, which have shown the importance of continuing the study of this devastating plant pathogen in our country.

Genetic diversity and population structure in contemporary house sparrow populations along an urbanization gradient.

Science.gov (United States)

Vangestel, C; Mergeay, J; Dawson, D A; Callens, T; Vandomme, V; Lens, L

2012-09-01

House sparrow (Passer domesticus) populations have suffered major declines in urban as well as rural areas, while remaining relatively stable in suburban ones. Yet, to date no exhaustive attempt has been made to examine how, and to what extent, spatial variation in population demography is reflected in genetic population structuring along contemporary urbanization gradients. Here we use putatively neutral microsatellite loci to study if and how genetic variation can be partitioned in a hierarchical way among different urbanization classes. Principal coordinate analyses did not support the hypothesis that urban/suburban and rural populations comprise two distinct genetic clusters. Comparison of FST values at different hierarchical scales revealed drift as an important force of population differentiation. Redundancy analyses revealed that genetic structure was strongly affected by both spatial variation and level of urbanization. The results shown here can be used as baseline information for future genetic monitoring programmes and provide additional insights into contemporary house sparrow dynamics along urbanization gradients.

Shallow Population Genetic Structures of Thread-sail Filefish ( Populations from Korean Coastal Waters

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M. Yoon

2012-02-01

Full Text Available Genetic diversities, population genetic structures and demographic histories of the thread-sail filefish Stephanolepis cirrhifer were investigated by nucleotide sequencing of 336 base pairs of the mitochondrial DNA (mtDNA control region in 111 individuals collected from six populations in Korean coastal waters. A total of 70 haplotypes were defined by 58 variable nucleotide sites. The neighbor-joining tree of the 70 haplotypes was shallow and did not provide evidence of geographical associations. Expansion of S. cirrhifer populations began approximate 51,000 to 102,000 years before present, correlating with the period of sea level rise since the late Pleistocene glacial maximum. High levels of haplotype diversities (0.974±0.029 to 1.000±0.076 and nucleotide diversities (0.014 to 0.019, and low levels of genetic differentiation among populations inferred from pairwise population FST values (−0.007 to 0.107, support an expansion of the S. cirrhifer population. Hierarchical analysis of molecular variance (AMOVA revealed weak but significant genetic structures among three groups (FCT = 0.028, p<0.05, and no genetic variation within groups (0.53%; FSC = 0.005, p = 0.23. These results may help establish appropriate fishery management strategies for stocks of S. cirrhifer and related species.

Assessment of radioactive elements in canned tuna marketed in Saudi Arabia after Fukushima accident

International Nuclear Information System (INIS)

Alkhomashi, N.; Alyousif, A.A.S.; Walied Alotibi; Alkhorayef, M.A.

2016-01-01

In the current study, 32 brands of canned tuna that were purchased in supermarkets in Riyadh, Saudi Arabia were analysed to quantify the activity levels of 137 Cs, 134 Cs and 40 K. These samples were processed in Japan, the Philippines, Thailand, Europe and the Middle East in 2011 and 2012. The samples were analysed using high-resolution gamma-ray spectroscopy. The highest activity concentrations of all three radionuclides were obtained in the samples that were processed in Japan in 2011 a few months after the Fukushima Daiichi accident. However, the activity concentrations of radiocaesium in all the samples in this study were far below the limit for food and beverages of 100 Bq/kg, which is the standard limit in the Japan. (author)

Hydraulic control of tuna fins: A role for the lymphatic system in vertebrate locomotion.

Science.gov (United States)

Pavlov, Vadim; Rosental, Benyamin; Hansen, Nathaniel F; Beers, Jody M; Parish, George; Rowbotham, Ian; Block, Barbara A

2017-07-21

The lymphatic system in teleost fish has genetic and developmental origins similar to those of the mammalian lymphatic system, which is involved in immune response and fluid homeostasis. Here, we show that the lymphatic system of tunas functions in swimming hydrodynamics. Specifically, a musculo-vascular complex, consisting of fin muscles, bones, and lymphatic vessels, is involved in the hydraulic control of median fins. This specialization of the lymphatic system is associated with fish in the family Scombridae and may have evolved in response to the demand for swimming and maneuvering control in these high-performance species. Copyright © 2017 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

Genetic diversity and population genetic structure of the only population of Aoluguya Reindeer (Rangifer tarandus) in China.

Science.gov (United States)

Ju, Yan; Liu, Huamiao; Rong, Min; Zhang, Ranran; Dong, Yimeng; Zhou, Yongna; Xing, Xiumei

2018-04-16

Aoluguya Reindeer is the only reindeer species in China and currently approximately 1000 Aoluguya Reindeer remain semi-domesticated. A relative low diversity estimate was found by investigating genetic variability and demographic history of its population. Mismatch distribution curve of its nucleotide sequences and neutral test indicate its population has not experienced expansion. Genetic diversity and population structure were also analysed by using its mtDNA and microsatellites technology. Statistical results of these analyses showed there were varying degrees of population inbreeding and suggested that gene flow existed among its populations at one time. Three mutation models were also used to detect the bottleneck effect of reindeer population. The genetic variation of eight populations is relatively small. In addition, the clustering program STRUCTURE was used to analyse Aoluguya Reindeer population structure, to determine its optimal K and first time to analyse the phylogenetic status of Aoluguya Reindeer among other reindeer subspecies. It is recommended that the government establish a natural conservation area in Aoluguya Reindeer growing geography, forbade the trade and hunting of Aoluguya Reindeer, and strengthen the protection of this endangered species.

Ethnicity and Population Structure in Personal Naming Networks

Science.gov (United States)

Mateos, Pablo; Longley, Paul A.; O'Sullivan, David

2011-01-01

Personal naming practices exist in all human groups and are far from random. Rather, they continue to reflect social norms and ethno-cultural customs that have developed over generations. As a consequence, contemporary name frequency distributions retain distinct geographic, social and ethno-cultural patterning that can be exploited to understand population structure in human biology, public health and social science. Previous attempts to detect and delineate such structure in large populations have entailed extensive empirical analysis of naming conventions in different parts of the world without seeking any general or automated methods of population classification by ethno-cultural origin. Here we show how ‘naming networks’, constructed from forename-surname pairs of a large sample of the contemporary human population in 17 countries, provide a valuable representation of cultural, ethnic and linguistic population structure around the world. This innovative approach enriches and adds value to automated population classification through conventional national data sources such as telephone directories and electoral registers. The method identifies clear social and ethno-cultural clusters in such naming networks that extend far beyond the geographic areas in which particular names originated, and that are preserved even after international migration. Moreover, one of the most striking findings of this approach is that these clusters simply ‘emerge’ from the aggregation of millions of individual decisions on parental naming practices for their children, without any prior knowledge introduced by the researcher. Our probabilistic approach to community assignment, both at city level as well as at a global scale, helps to reveal the degree of isolation, integration or overlap between human populations in our rapidly globalising world. As such, this work has important implications for research in population genetics, public health, and social science adding new

Structure of the New England herring gull population

Science.gov (United States)

Kadlec, J.A.; Drury, W.H.

1968-01-01

Measurements of the rates of population increase, reproduction, and mortality together with an observed age ratio, were used to analyze the population of the Herring Gull in New England. Data from sporadic censuses prior to this study, aerial censuses by the authors, and National Audubon Society Christmas Bird Count indicated that the New England breeding population has been doubling every 12 to 15 years since the early 1900's. This increase has involved founding new colonies and expanding the breeding range There is evidence that 15 to 30% of the adults do not breed in any given year. Sixty-one productivity measurements on 43 islands from 1963 through 1966, involving almost 13,000 nests, showed that from 0.8 to 1.4 young/breeding pair/year is the usual range of rate of production. The age distribution in the population was determined by classifying Herring Gulls by plumage category on an aerial census of the coast from Tampico, Mexico, to Cape Sable, Nova Scotia. Of the 622,000 gulls observed, 68% were adults, 17% were second- and third-year birds, and 15% were first-year birds. Mortality rates derived from band recovery data were too high to be consistent with the observed rate of population growth, productivity, and age structure. Loss of bands increasing to the rate of about 20%/year 5 years after banding eliminates most of the discrepancy. The age structure and rate of population increase indicate a mortality rate of 4 to 9% for gulls 2 years old or older, compared with the 25 to 30% indicated by band recoveries. The population structure we have developed fits everything we have observed about Herring Gull population dynamics, except mortality based on band recoveries.

Kin groups and trait groups: population structure and epidemic disease selection.

Science.gov (United States)

Fix, A G

1984-10-01

A Monte Carlo simulation based on the population structure of a small-scale human population, the Semai Senoi of Malaysia, has been developed to study the combined effects of group, kin, and individual selection. The population structure resembles D.S. Wilson's structured deme model in that local breeding populations (Semai settlements) are subdivided into trait groups (hamlets) that may be kin-structured and are not themselves demes. Additionally, settlement breeding populations are connected by two-dimensional stepping-stone migration approaching 30% per generation. Group and kin-structured group selection occur among hamlets the survivors of which then disperse to breed within the settlement population. Genetic drift is modeled by the process of hamlet formation; individual selection as a deterministic process, and stepping-stone migration as either random or kin-structured migrant groups. The mechanism for group selection is epidemics of infectious disease that can wipe out small hamlets particularly if most adults become sick and social life collapses. Genetic resistance to a disease is an individual attribute; however, hamlet groups with several resistant adults are less likely to disintegrate and experience high social mortality. A specific human gene, hemoglobin E, which confers resistance to malaria, is studied as an example of the process. The results of the simulations show that high genetic variance among hamlet groups may be generated by moderate degrees of kin-structuring. This strong microdifferentiation provides the potential for group selection. The effect of group selection in this case is rapid increase in gene frequencies among the total set of populations. In fact, group selection in concert with individual selection produced a faster rate of gene frequency increase among a set of 25 populations than the rate within a single unstructured population subject to deterministic individual selection. Such rapid evolution with plausible rates of

The scale of population structure in Arabidopsis thaliana.

Directory of Open Access Journals (Sweden)

Alexander Platt

2010-02-01

Full Text Available The population structure of an organism reflects its evolutionary history and influences its evolutionary trajectory. It constrains the combination of genetic diversity and reveals patterns of past gene flow. Understanding it is a prerequisite for detecting genomic regions under selection, predicting the effect of population disturbances, or modeling gene flow. This paper examines the detailed global population structure of Arabidopsis thaliana. Using a set of 5,707 plants collected from around the globe and genotyped at 149 SNPs, we show that while A. thaliana as a species self-fertilizes 97% of the time, there is considerable variation among local groups. This level of outcrossing greatly limits observed heterozygosity but is sufficient to generate considerable local haplotypic diversity. We also find that in its native Eurasian range A. thaliana exhibits continuous isolation by distance at every geographic scale without natural breaks corresponding to classical notions of populations. By contrast, in North America, where it exists as an exotic species, A. thaliana exhibits little or no population structure at a continental scale but local isolation by distance that extends hundreds of km. This suggests a pattern for the development of isolation by distance that can establish itself shortly after an organism fills a new habitat range. It also raises questions about the general applicability of many standard population genetics models. Any model based on discrete clusters of interchangeable individuals will be an uneasy fit to organisms like A. thaliana which exhibit continuous isolation by distance on many scales.

Structural Approaches to Sequence Evolution Molecules, Networks, Populations

CERN Document Server

Bastolla, Ugo; Roman, H. Eduardo; Vendruscolo, Michele

2007-01-01

Structural requirements constrain the evolution of biological entities at all levels, from macromolecules to their networks, right up to populations of biological organisms. Classical models of molecular evolution, however, are focused at the level of the symbols - the biological sequence - rather than that of their resulting structure. Now recent advances in understanding the thermodynamics of macromolecules, the topological properties of gene networks, the organization and mutation capabilities of genomes, and the structure of populations make it possible to incorporate these key elements into a broader and deeply interdisciplinary view of molecular evolution. This book gives an account of such a new approach, through clear tutorial contributions by leading scientists specializing in the different fields involved.

Population structure and genetic diversity of Sudanese native chickens

African Journals Online (AJOL)

The objectives of this study were to analyze genetic diversity and population structure of Sudanese native chicken breeds involved in a conservation program. Five Sudanese native chicken breeds were compared with populations studied previously, which included six purebred lines, six African populations and one ...

UNIVERSITAS: A PROJECT WITH A HUMANIST AND INTEGRAL CULTURE APPROACH IN LAS TUNAS UNIVERSITY CENTER / UNIVERSITAS: PROYECTO POR UN PERFIL HUMANISTA Y DE CULTURA INTEGRAL EN EL CENTRO UNIVERSITARIO DE LAS TUNAS

Directory of Open Access Journals (Sweden)

Rafaela Macías Reyes

2010-10-01

Full Text Available UNIVERSITAS is a project of sociocultural transformation in Las Tunas university center, with the aim to impel the development of the integral culture in the university community. The knowledge and deepening in the needs, interests, hoping, ways of thinking and acting; in an analysis of the reality, ease the elaboration of the project; which enriches the cultural spectrum of the university community. It is supported by a body of theoretical and methodological budget. Its system of actions is based on newness ideas bind to mechanism of supervisory as: the coordinator group of the project, the orientation bureau, and at the same time the functioning of fixed spaces as: the university theater, the room for exhibitions, Univideo, student’ house, ropes, voices, university and creators, a date with craftsman, dance and music.

Mapping population-based structural connectomes.

Science.gov (United States)

Zhang, Zhengwu; Descoteaux, Maxime; Zhang, Jingwen; Girard, Gabriel; Chamberland, Maxime; Dunson, David; Srivastava, Anuj; Zhu, Hongtu

2018-05-15

Advances in understanding the structural connectomes of human brain require improved approaches for the construction, comparison and integration of high-dimensional whole-brain tractography data from a large number of individuals. This article develops a population-based structural connectome (PSC) mapping framework to address these challenges. PSC simultaneously characterizes a large number of white matter bundles within and across different subjects by registering different subjects' brains based on coarse cortical parcellations, compressing the bundles of each connection, and extracting novel connection weights. A robust tractography algorithm and streamline post-processing techniques, including dilation of gray matter regions, streamline cutting, and outlier streamline removal are applied to improve the robustness of the extracted structural connectomes. The developed PSC framework can be used to reproducibly extract binary networks, weighted networks and streamline-based brain connectomes. We apply the PSC to Human Connectome Project data to illustrate its application in characterizing normal variations and heritability of structural connectomes in healthy subjects. Copyright © 2018 Elsevier Inc. All rights reserved.

Familial identification: population structure and relationship distinguishability.

Science.gov (United States)

Rohlfs, Rori V; Fullerton, Stephanie Malia; Weir, Bruce S

2012-02-01

With the expansion of offender/arrestee DNA profile databases, genetic forensic identification has become commonplace in the United States criminal justice system. Implementation of familial searching has been proposed to extend forensic identification to family members of individuals with profiles in offender/arrestee DNA databases. In familial searching, a partial genetic profile match between a database entrant and a crime scene sample is used to implicate genetic relatives of the database entrant as potential sources of the crime scene sample. In addition to concerns regarding civil liberties, familial searching poses unanswered statistical questions. In this study, we define confidence intervals on estimated likelihood ratios for familial identification. Using these confidence intervals, we consider familial searching in a structured population. We show that relatives and unrelated individuals from population samples with lower gene diversity over the loci considered are less distinguishable. We also consider cases where the most appropriate population sample for individuals considered is unknown. We find that as a less appropriate population sample, and thus allele frequency distribution, is assumed, relatives and unrelated individuals become more difficult to distinguish. In addition, we show that relationship distinguishability increases with the number of markers considered, but decreases for more distant genetic familial relationships. All of these results indicate that caution is warranted in the application of familial searching in structured populations, such as in the United States.

Familial identification: population structure and relationship distinguishability.

Directory of Open Access Journals (Sweden)

Rori V Rohlfs

2012-02-01

Full Text Available With the expansion of offender/arrestee DNA profile databases, genetic forensic identification has become commonplace in the United States criminal justice system. Implementation of familial searching has been proposed to extend forensic identification to family members of individuals with profiles in offender/arrestee DNA databases. In familial searching, a partial genetic profile match between a database entrant and a crime scene sample is used to implicate genetic relatives of the database entrant as potential sources of the crime scene sample. In addition to concerns regarding civil liberties, familial searching poses unanswered statistical questions. In this study, we define confidence intervals on estimated likelihood ratios for familial identification. Using these confidence intervals, we consider familial searching in a structured population. We show that relatives and unrelated individuals from population samples with lower gene diversity over the loci considered are less distinguishable. We also consider cases where the most appropriate population sample for individuals considered is unknown. We find that as a less appropriate population sample, and thus allele frequency distribution, is assumed, relatives and unrelated individuals become more difficult to distinguish. In addition, we show that relationship distinguishability increases with the number of markers considered, but decreases for more distant genetic familial relationships. All of these results indicate that caution is warranted in the application of familial searching in structured populations, such as in the United States.

Population Genetic Structure and Gene Flow Among Nigerian Goats ...

African Journals Online (AJOL)

Population Genetic structure in 200 indigenous goats sampled across four states from the South-Western and South Southern region of Nigeria was assessed using 7 microsatellite DNA markers. Observed Analysis of molecular genetic variation (AMOVA) was higher within populations (3.47) than among populations (1.84) ...

Evolutionary snowdrift game incorporating costly punishment in structured populations

Science.gov (United States)

Chan, Nat W. H.; Xu, C.; Tey, Siew Kian; Yap, Yee Jiun; Hui, P. M.

2013-01-01

The role of punishment and the effects of a structured population in promoting cooperation are important issues. Within a recent model of snowdrift game (SG) incorporating a costly punishing strategy (P), we study the effects of a population connected through a square lattice. The punishers, who carry basically a cooperative (C) character, are willing to pay a cost α so as to punish a non-cooperative (D) opponent by β. Depending on α, β, the cost-to-benefit ratio r in SG, and the initial conditions, the system evolves into different phases that could be homogeneous or inhomogeneous. The spatial structure imposes geometrical constraint on how one agent is affected by neighboring agents. Results of extensive numerical simulations, both for the steady state and the dynamics, are presented. Possible phases are identified and discussed, and isolated phases in the r-β space are identified as special local structures of strategies that are stable due to the lattice structure. In contrast to a well-mixed population where punishers are suppressed due to the cost of punishment, the altruistic punishing strategy can flourish and prevail for appropriate values of the parameters, implying an enhancement in cooperation by imposing punishments in a structured population. The system could evolve to a phase corresponding to the coexistence of C, D, and P strategies at some particular payoff parameters, and such a phase is absent in a well-mixed population. The pair approximation, a commonly used analytic approach, is extended from a two-strategy system to a three-strategy system. We show that the pair approximation can, at best, capture the numerical results only qualitatively. Due to the improper way of including spatial correlation imposed by the lattice structure, the approximation does not give the frequencies of C, D, and P accurately and fails to give the homogeneous AllD and AllP phases.

An individual-based model of skipjack tuna (Katsuwonus pelamis) movement in the tropical Pacific ocean

Science.gov (United States)

Scutt Phillips, Joe; Sen Gupta, Alex; Senina, Inna; van Sebille, Erik; Lange, Michael; Lehodey, Patrick; Hampton, John; Nicol, Simon

2018-05-01

The distribution of marine species is often modeled using Eulerian approaches, in which changes to population density or abundance are calculated at fixed locations in space. Conversely, Lagrangian, or individual-based, models simulate the movement of individual particles moving in continuous space, with broader-scale patterns such as distribution being an emergent property of many, potentially adaptive, individuals. These models offer advantages in examining dynamics across spatiotemporal scales and making comparisons with observations from individual-scale data. Here, we introduce and describe such a model, the Individual-based Kinesis, Advection and Movement of Ocean ANimAls model (Ikamoana), which we use to replicate the movement processes of an existing Eulerian model for marine predators (the Spatial Ecosystem and Population Dynamics Model, SEAPODYM). Ikamoana simulates the movement of either individual or groups of animals by physical ocean currents, habitat-dependent stochastic movements (kinesis), and taxis movements representing active searching behaviours. Applying our model to Pacific skipjack tuna (Katsuwonus pelamis), we show that it accurately replicates the evolution of density distribution simulated by SEAPODYM with low time-mean error and a spatial correlation of density that exceeds 0.96 at all times. We demonstrate how the Lagrangian approach permits easy tracking of individuals' trajectories for examining connectivity between different regions, and show how the model can provide independent estimates of transfer rates between commonly used assessment regions. In particular, we find that retention rates in most assessment regions are considerably smaller (up to a factor of 2) than those estimated by this population of skipjack's primary assessment model. Moreover, these rates are sensitive to ocean state (e.g. El Nino vs La Nina) and so assuming fixed transfer rates between regions may lead to spurious stock estimates. A novel feature of the

Form and function of the bulbus arteriosus in yellowfin tuna (Thunnus albacares), bigeye tuna (Thunnus obesus) and blue marlin (Makaira nigricans): static properties.

Science.gov (United States)

Braun, Marvin H; Brill, Richard W; Gosline, John M; Jones, David R

2003-10-01

The juxtaposition of heart and gills in teleost fish means that the Windkessel function characteristic of the whole mammalian arterial tree has to be subserved by the extremely short ventral aorta and bulbus arteriosus. Over the functional pressure range, arteries from blue marlin (Makaira nigricans) and yellowfin tuna (Thunnus albacares) have J-shaped pressure-volume (P-V) loops, while bulbi from the same species have r-shaped P-V loops, with a steep initial rise followed by a compliant plateau phase. The steep initial rise in pressure is due to the geometry of the lumen. The interactions between radius, pressure and tension require a large initial pressure to open the bulbar lumen for flow. The plateau is due to the unique organization of the bulbar wall. The large elastin:collagen ratio, limited amount of collagen arranged circumferentially, lack of elastin lamellae and low hydrophobicity of the elastin itself all combine to lower stiffness, increase extensibility and allow efficient recoil. Even though the modulus of bulbus material is much lower than that of an artery, at large volumes the overall stiffness of the bulbus increases rapidly. The morphological features that give rise to the special inflation characteristics of the bulbus help to extend flow and maintain pressure during diastole.

Population structure and expansion of kuruma shrimp ( Penaeus ...

African Journals Online (AJOL)

Sequence analyses on the specific intron from the elongation factor-1α gene were conducted to examine the population genetic structure and expansion of kuruma shrimp (Penaeus japonicus) off Taiwan. Five populations including 119 individuals were separately sampled from the north of East China Sea (ECS), west of ...

Genetic population structure of the vulnerable bog fritillary butterfly.

Science.gov (United States)

Vandewoestijne, S; Baguette, M

2004-01-01

Populations of the bog fritillary butterfly Proclossiana eunomia (Lepidoptera, Nymphalidae) occur in patchy habitat in central and western Europe. P. eunomia is a vulnerable species in the Belgian Ardennes and the number of occupied sites has significantly decreased in this region since the 1960s. RAPD (random amplified polymorphic DNA) markers were used to study the consequences of habitat loss and fragmentation on the genetic population structure of this species. Gene diversity was lower in populations with smaller population sizes. Genetic subdivision was high (Fst=0.0887) considering the small spatial scale of this study (150 km2). The most geographically isolated population was also the most genetically differentiated one. The genetic population structure and genetic differentiation detected in this study were explained by (1) differences in altitude of the sampled locations and, (2) lower dispersal propensity and dispersal rate in fragmented landscapes versus continuous landscapes. Results from the RAPD analyses were compared with a previous allozyme based study on the same populations. The results of this study suggest that increased fragmentation has lead to a greater genetic differentiation between remaining P. eunomia populations.

THE CRAFT LIKE A CULTURAL PRACTICE THAT CONFIGURES SOCIOCULTURAL PROCESSES: THE BASKETWORK IN THE TUNAS AT THE PRESENT TIME / LA ARTESANÍA COMO UNA PRÁCTICA CULTURAL CONFIGURADORA DE PROCESOS SOCIOCULTURALES: LA CESTERÍA EN LAS TUNAS EN LA ACTUALIDAD

Directory of Open Access Journals (Sweden)

Yumairys Diamela Candó Gámez

2012-09-01

Full Text Available The presence of the handmade movement in The Tunas is an important cultural fact in which has left condensing the conserved information and renovated in the cultural memoirs of the tunero, as long as it is identity that reflective characteristic that distinguish it and very authentic revealing knowledge and specific creation of a societal group. The years ninety represented a stagnation in the popular craft, it altered and it confused the true sense of the handmade production. The market entered as an element of deregulation of the qualities. He fell in the temptation of the commercialization without control. The art is confused with something easy, the legitimate and necessary commercialization of the productions with the marketing of the candongas, the artisan with the worker self-employed, the promoter with the merolico. The institucionalization of the culture starting from the revolutionary victory with the cultural politics's application in Cuba, together to the economic crisis in the decade of the 90 are sociocultural factors that condition to the craft as that it configures of sociocultural processes that are evidenced in the inherited cultural practices or institutionalized, remunerated (professionals or not remunerated (fans, as approaches that it configures of groups. The types of craft, the techniques, the ethnic composition of the representative groups, the professional formation, the origin (field, city, periphery, and composition of the groups for gender and number (grupal or singular they are indicative that allow to conceptualize the characteristics and types of the craft as cultural practice in The Tunas.

Muscular system in the pacific bluefin tuna Thunnus orientalis (Teleostei: Scombridae).

Science.gov (United States)

Nakae, Masanori; Sasaki, Kunio; Shinohara, Gento; Okada, Tokihiko; Matsuura, Keiichi

2014-02-01

The muscular system in the Pacific bluefin tuna Thunnus orientalis is studied in detail. For the first time, a complete description of the muscular anatomy of a thunnid is provided here. Eighty-two elements including subdivisions of components of the muscular system are identified. This is less than found in a basal perciform and two other investigated scombrid species, owing mainly to the absence or fusion of pectoral, pelvic and caudal fin muscles. The absence of elements of the basal perciform pattern was most prominent in the caudal fin, which includes only the flexor dorsalis, flexor ventralis, hypochordal longitudinalis, and interradialis. In the caudal fin, the medial fan-shaped ray was identified as the first dorsal ray, judging from myological and neuroanatomical characters. The highly developed gill filament muscles in Thunnus orientalis and sheet-like rectus communis control gill ventilation. Long body muscle tendons reduce the metabolic energy needed during rapid and continuous swimming. These characters are interpreted as adaptations in the context of the oceanic life style of the species. Copyright © 2013 Wiley Periodicals, Inc.

Stage-Structured Population Dynamics of AEDES AEGYPTI

Science.gov (United States)

Yusoff, Nuraini; Budin, Harun; Ismail, Salemah

Aedes aegypti is the main vector in the transmission of dengue fever, a vector-borne disease affecting world population living in tropical and sub-tropical countries. Better understanding of the dynamics of its population growth will help in the efforts of controlling the spread of this disease. In looking at the population dynamics of Aedes aegypti, this paper explored the stage-structured modeling of the population growth of the mosquito using the matrix population model. The life cycle of the mosquito was divided into five stages: eggs, larvae, pupae, adult1 and adult2. Developmental rates were obtained for the average Malaysian temperature and these were used in constructing the transition matrix for the matrix model. The model, which was based only on temperature, projected that the population of Aedes aegypti will blow up with time, which is not realistic. For further work, other factors need to be taken into account to obtain a more realistic result.

Population structure of humpback whales in the western and central South Pacific Ocean as determined by vocal exchange among populations.

Science.gov (United States)

Garland, Ellen C; Goldizen, Anne W; Lilley, Matthew S; Rekdahl, Melinda L; Garrigue, Claire; Constantine, Rochelle; Hauser, Nan Daeschler; Poole, M Michael; Robbins, Jooke; Noad, Michael J

2015-08-01

For cetaceans, population structure is traditionally determined by molecular genetics or photographically identified individuals. Acoustic data, however, has provided information on movement and population structure with less effort and cost than traditional methods in an array of taxa. Male humpback whales (Megaptera novaeangliae) produce a continually evolving vocal sexual display, or song, that is similar among all males in a population. The rapid cultural transmission (the transfer of information or behavior between conspecifics through social learning) of different versions of this display between distinct but interconnected populations in the western and central South Pacific region presents a unique way to investigate population structure based on the movement dynamics of a song (acoustic) display. Using 11 years of data, we investigated an acoustically based population structure for the region by comparing stereotyped song sequences among populations and years. We used the Levenshtein distance technique to group previously defined populations into (vocally based) clusters based on the overall similarity of their song display in space and time. We identified the following distinct vocal clusters: western cluster, 1 population off eastern Australia; central cluster, populations around New Caledonia, Tonga, and American Samoa; and eastern region, either a single cluster or 2 clusters, one around the Cook Islands and the other off French Polynesia. These results are consistent with the hypothesis that each breeding aggregation represents a distinct population (each occupied a single, terminal node) in a metapopulation, similar to the current understanding of population structure based on genetic and photo-identification studies. However, the central vocal cluster had higher levels of song-sharing among populations than the other clusters, indicating that levels of vocal connectivity varied within the region. Our results demonstrate the utility and value of

Competition in size-structured populations: mechanisms inducing cohort formation and population cycles.

Science.gov (United States)

de Roos, André M; Persson, Lennart

2003-02-01

In this paper we investigate the consequences of size-dependent competition among the individuals of a consumer population by analyzing the dynamic properties of a physiologically structured population model. Only 2 size-classes of individuals are distinguished: juveniles and adults. Juveniles and adults both feed on one and the same resource and hence interact by means of exploitative competition. Juvenile individuals allocate all assimilated energy into development and mature on reaching a fixed developmental threshold. The combination of this fixed threshold and the resource-dependent developmental rate, implies that the juvenile delay between birth and the onset of reproduction may vary in time. Adult individuals allocate all assimilated energy to reproduction. Mortality of both juveniles and adults is assumed to be inversely proportional to the amount of energy assimilated. In this setting we study how the dynamics of the population are influenced by the relative foraging capabilities of juveniles and adults. In line with results that we previously obtained in size-structured consumer-resource models with pulsed reproduction, population cycles primarily occur when either juveniles or adults have a distinct competitive advantage. When adults have a larger per capita feeding rate and are hence competitively superior to juveniles, population oscillations occur that are primarily induced by the fact that the duration of the juvenile period changes with changing food conditions. These cycles do not occur when the juvenile delay is a fixed parameter. When juveniles are competitively superior, two different types of population fluctuations can occur: (1) rapid, low-amplitude fluctuations having a period of half the juvenile delay and (2) slow, large-amplitude fluctuations characterized by a period, which is roughly equal to the juvenile delay. The analysis of simplified versions of the structured model indicates that these two types of oscillations also occur if

Reduced fine-scale spatial genetic structure in grazed populations of Dianthus carthusianorum.

Science.gov (United States)

Rico, Y; Wagner, H H

2016-11-01

Strong spatial genetic structure in plant populations can increase homozygosity, reducing genetic diversity and adaptive potential. The strength of spatial genetic structure largely depends on rates of seed dispersal and pollen flow. Seeds without dispersal adaptations are likely to be dispersed over short distances within the vicinity of the mother plant, resulting in spatial clustering of related genotypes (fine-scale spatial genetic structure, hereafter spatial genetic structure (SGS)). However, primary seed dispersal by zoochory can promote effective dispersal, increasing the mixing of seeds and influencing SGS within plant populations. In this study, we investigated the effects of seed dispersal by rotational sheep grazing on the strength of SGS and genetic diversity using 11 nuclear microsatellites for 49 populations of the calcareous grassland forb Dianthus carthusianorum. Populations connected by rotational sheep grazing showed significantly weaker SGS and higher genetic diversity than populations in ungrazed grasslands. Independent of grazing treatment, small populations showed significantly stronger SGS and lower genetic diversity than larger populations, likely due to genetic drift. A lack of significant differences in the strength of SGS and genetic diversity between populations that were recently colonized and pre-existing populations suggested that populations colonized after the reintroduction of rotational sheep grazing were likely founded by colonists from diverse source populations. We conclude that dispersal by rotational sheep grazing has the potential to considerably reduce SGS within D. carthusianorum populations. Our study highlights the effectiveness of landscape management by rotational sheep grazing to importantly reduce genetic structure at local scales within restored plant populations.

Identification of enolases and aldolases as important fish allergens in cod, salmon and tuna: component resolved diagnosis using parvalbumin and the new allergens.

Science.gov (United States)

Kuehn, A; Hilger, C; Lehners-Weber, C; Codreanu-Morel, F; Morisset, M; Metz-Favre, C; Pauli, G; de Blay, F; Revets, D; Muller, C P; Vogel, L; Vieths, S; Hentges, F

2013-07-01

The majority of fish-allergic patients are sensitized to parvalbumin, known to be the cause of important IgE cross-reactivity among fish species. Little is known about the importance of fish allergens other than parvalbumin. The aim of this study was to characterize hitherto undefined fish allergens in three commonly consumed fish species, cod, salmon and tuna, and to evaluate their importance for in vitro IgE-diagnosis in addition to parvalbumin and fish gelatin. Sixty-two patients were diagnosed by clinical history, skin prick tests and specific IgE to fish extracts. Two new fish allergens from cod, salmon and tuna were identified by microsequencing. These proteins were characterized by immunoblot, ELISA and mediator release assay. Purified parvalbumin, enolase, aldolase and fish gelatin were used for quantification of specific IgE in ELISA. Parvalbumin and two other allergens of 50 and 40 kDa were detected in IgE-immunoblots of cod, salmon and tuna extracts by most patient sera. The 50 and 40 kDa proteins were identified as beta-enolase and fructose-bisphosphate aldolase A respectively. Both purified enzymes showed allergenic activity in the mediator release assay. Indeed, 72.6% of the patients were sensitized to parvalbumin, 20% of these had specific IgE to salmon parvalbumin only. IgE to enolases were found in 62.9% (0.5-95.0 kUA /L), to aldolases in 50.0% (0.4-26.0 kUA /L) and to fish gelatin in 19.3% (0.4-20.0 kUA /L) of the patients. Inter-species cross-reactivity, even though limited, was found for enolases and aldolases by IgE-inhibition ELISA. Fish enolase and aldolase have been identified as important new fish allergens. In fish allergy diagnosis, IgE to enolase and aldolase are especially relevant when IgE to parvalbumin are absent. © 2013 John Wiley & Sons Ltd.

EL FENÓMENO SOCIO RELIGIOSO EN LAS TUNAS. EL PENTECOSTALISMO Y SU INFLUENCIA PARA UNA CONCEPCIÓN IDENTITARIA

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Enrique Antonio Lalana Torres

2015-01-01

Full Text Available Resumen El pentecostalismo como componente del campo religioso del territorio de Victoria de Las Tunas, los aportes a la identidad cultural son los hilos conductores de este trabajo. Comprende además un análisis del proceso de asentamiento y desarrollo del mismo a partir del análisis de las fuentes históricas y socioculturales. Su génesis primaria responde a condicionantes propias de las transformaciones de Europa Occidental durante el siglo XVI y, consciente o no sus fundadores promulgaron las bases para el correlato religioso del nuevo orden socio económico que se gestaba: el capitalismo. Las implicaciones a la identidad cultural en las regiones donde se asentaron y desarrollaron este tipo de denominaciones generaron comportamientos interesantes que constituyen un importante objeto de estudio para su mejor comprensión. ABSTRACT Pentecostalism as a component of the religious field of the territory of Victoria de Las Tunas, contributions to cultural identity are the threads of this work. It includes an analysis of the process of settlement and development of the same from the analysis of historical and sociocultural sources. Its primary genesis responds to own conditions of transformations of Western Europe during the sixteenth century and, consciously or not its founders enacted the basis for the religious correlate the new socioeconomic order that was brewing: capitalism. The implications for cultural identity in the regions where they settled and developed this kind of names generated interesting behaviors that constitute an important object of study for better understanding.

Inference and Analysis of Population Structure Using Genetic Data and Network Theory.

Science.gov (United States)

Greenbaum, Gili; Templeton, Alan R; Bar-David, Shirli

2016-04-01

Clustering individuals to subpopulations based on genetic data has become commonplace in many genetic studies. Inference about population structure is most often done by applying model-based approaches, aided by visualization using distance-based approaches such as multidimensional scaling. While existing distance-based approaches suffer from a lack of statistical rigor, model-based approaches entail assumptions of prior conditions such as that the subpopulations are at Hardy-Weinberg equilibria. Here we present a distance-based approach for inference about population structure using genetic data by defining population structure using network theory terminology and methods. A network is constructed from a pairwise genetic-similarity matrix of all sampled individuals. The community partition, a partition of a network to dense subgraphs, is equated with population structure, a partition of the population to genetically related groups. Community-detection algorithms are used to partition the network into communities, interpreted as a partition of the population to subpopulations. The statistical significance of the structure can be estimated by using permutation tests to evaluate the significance of the partition's modularity, a network theory measure indicating the quality of community partitions. To further characterize population structure, a new measure of the strength of association (SA) for an individual to its assigned community is presented. The strength of association distribution (SAD) of the communities is analyzed to provide additional population structure characteristics, such as the relative amount of gene flow experienced by the different subpopulations and identification of hybrid individuals. Human genetic data and simulations are used to demonstrate the applicability of the analyses. The approach presented here provides a novel, computationally efficient model-free method for inference about population structure that does not entail assumption of

Genetic diversity and population structure in contemporary house sparrow populations along an urbanization gradient

OpenAIRE

Vangestel, C; Mergeay, Joachim; Dawson, D. A; Callens, T; Vandomme, V; Lens, L

2012-01-01

House sparrow (Passer domesticus) populations have suffered major declines in urban as well as rural areas, while remaining relatively stable in suburban ones. Yet, to date no exhaustive attempt has been made to examine how, and to what extent, spatial variation in population demography is reflected in genetic population structuring along contemporary urbanization gradients. Here we use putatively neutral microsatellite loci to study if and how genetic variation can be partitioned in a hierar...

Population and evolutionary dynamics in spatially structured seasonally varying environments.

Science.gov (United States)

Reid, Jane M; Travis, Justin M J; Daunt, Francis; Burthe, Sarah J; Wanless, Sarah; Dytham, Calvin

2018-03-25

Increasingly imperative objectives in ecology are to understand and forecast population dynamic and evolutionary responses to seasonal environmental variation and change. Such population and evolutionary dynamics result from immediate and lagged responses of all key life-history traits, and resulting demographic rates that affect population growth rate, to seasonal environmental conditions and population density. However, existing population dynamic and eco-evolutionary theory and models have not yet fully encompassed within-individual and among-individual variation, covariation, structure and heterogeneity, and ongoing evolution, in a critical life-history trait that allows individuals to respond to seasonal environmental conditions: seasonal migration. Meanwhile, empirical studies aided by new animal-tracking technologies are increasingly demonstrating substantial within-population variation in the occurrence and form of migration versus year-round residence, generating diverse forms of 'partial migration' spanning diverse species, habitats and spatial scales. Such partially migratory systems form a continuum between the extreme scenarios of full migration and full year-round residence, and are commonplace in nature. Here, we first review basic scenarios of partial migration and associated models designed to identify conditions that facilitate the maintenance of migratory polymorphism. We highlight that such models have been fundamental to the development of partial migration theory, but are spatially and demographically simplistic compared to the rich bodies of population dynamic theory and models that consider spatially structured populations with dispersal but no migration, or consider populations experiencing strong seasonality and full obligate migration. Second, to provide an overarching conceptual framework for spatio-temporal population dynamics, we define a 'partially migratory meta-population' system as a spatially structured set of locations that can

Genetic population structure of Shoal Bass within their native range

Science.gov (United States)

Taylor, Andrew T.; Tringali, Michael D.; Sammons, Steven M.; Ingram, Travis R.; O'Rouke, Patrick M.; Peterson, Douglas L.; Long, James M.

2018-01-01

Endemic to the Apalachicola River basin of the southeastern USA, the Shoal Bass Micropterus cataractae is a fluvial‐specialist sport fish that is imperiled because of anthropogenic habitat alteration. To counter population declines, restorative stocking efforts are becoming an increasingly relevant management strategy. However, population genetic structure within the species is currently unknown, but it could influence management decisions, such as brood source location. Leveraging a collaborative effort to collect and genotype specimens with 16 microsatellite loci, our objective was to characterize hierarchical population structure and genetic differentiation of the Shoal Bass across its native range, including an examination of structuring mechanisms, such as relatedness and inbreeding levels. Specimens identified as Shoal Bass were collected from 13 distinct sites (N ranged from 17 to 209 per location) and were then taxonomically screened to remove nonnative congeners and hybrids (pure Shoal Bass N ranged from 13 to 183 per location). Our results revealed appreciable population structure, with five distinct Shoal Bass populations identifiable at the uppermost hierarchical level that generally corresponded with natural geographic features and anthropogenic barriers. Substructure was recovered within several of these populations, wherein differences appeared related to spatial isolation and local population dynamics. An analysis of molecular variance revealed that 3.6% of the variation in our data set was accounted for among three larger river drainages, but substructure within each river drainage also explained an additional 8.9% of genetic variation, demonstrating that management at a scale lower than the river drainage level would likely best conserve genetic diversity. Results provide a population genetic framework that can inform future management decisions, such as brood source location, so that genetic diversity within and among populations is

Spatial and population genetic structure of microsatellites in white pine

Science.gov (United States)

Paula E. Marquardt; Bryan K. Epperson

2004-01-01

We evaluated the population genetic structure of seven microsatellite loci for old growth and second growth populations of eastern white pine (Pinus strobus). From each population, located within Hartwick Pines State Park, Grayling, Michigan, USA, 120-122 contiguous trees were sampled for genetic analysis. Within each population, genetic diversity...

Population genetic structure of peninsular Malaysia Malay sub-ethnic groups.

Science.gov (United States)

Hatin, Wan Isa; Nur-Shafawati, Ab Rajab; Zahri, Mohd-Khairi; Xu, Shuhua; Jin, Li; Tan, Soon-Guan; Rizman-Idid, Mohammed; Zilfalil, Bin Alwi

2011-04-05

Patterns of modern human population structure are helpful in understanding the history of human migration and admixture. We conducted a study on genetic structure of the Malay population in Malaysia, using 54,794 genome-wide single nucleotide polymorphism genotype data generated in four Malay sub-ethnic groups in peninsular Malaysia (Melayu Kelantan, Melayu Minang, Melayu Jawa and Melayu Bugis). To the best of our knowledge this is the first study conducted on these four Malay sub-ethnic groups and the analysis of genotype data of these four groups were compiled together with 11 other populations' genotype data from Indonesia, China, India, Africa and indigenous populations in Peninsular Malaysia obtained from the Pan-Asian SNP database. The phylogeny of populations showed that all of the four Malay sub-ethnic groups are separated into at least three different clusters. The Melayu Jawa, Melayu Bugis and Melayu Minang have a very close genetic relationship with Indonesian populations indicating a common ancestral history, while the Melayu Kelantan formed a distinct group on the tree indicating that they are genetically different from the other Malay sub-ethnic groups. We have detected genetic structuring among the Malay populations and this could possibly be accounted for by their different historical origins. Our results provide information of the genetic differentiation between these populations and a valuable insight into the origins of the Malay sub-ethnic groups in Peninsular Malaysia.

A large outbreak of scombroid fish poisoning associated with eating yellowfin tuna (Thunnus albacares) at a military mass catering in Dakar, Senegal.

Science.gov (United States)

Demoncheaux, J-P; Michel, R; Mazenot, C; Duflos, G; Iacini, C; de Laval, F; Delaval, F; Saware, E M; Renard, J-C

2012-06-01

On 26 November 2010, an outbreak of scombroid fish poisoning occurred in the French Armed Forces in Dakar, Senegal. This chemical intoxication, due to high histamine concentration in fish, is often mistaken for an allergic reaction. A case-control study was undertaken including the 71 cases and 78 randomly selected controls among lunch attendees. The usual symptoms for scombroid fish poisoning were observed in cases, i.e. flushing (85.9%), headache (83.1%), rapid/weak pulse (59.1%) and diarrhoea (47.9%). Symptoms occurred from within a few minutes to up to 3 h following the meal. Most patients quickly recovered with antihistamine and/or symptomatic treatment. Tuna was the only food item positively associated with illness (odds ratio 36.3, 95% confidence interval 6.3-210.0), with the risk of illness increasing with the quantity of fish consumed. No bacterial contamination was found in leftover food, but histamine concentration in tuna was found to be 4900 mg/kg, almost 50-fold higher than the concentration allowed by European regulations. This report is unique because of the large size of the case series - to our knowledge, the largest event of scombroid fish poisoning ever reported - and the chemical and bacteriological analyses results obtained on leftover food.

Selected-ion storage GC-MS analysis of polycyclic aromatic hydrocarbons in palm dates and tuna fish

Energy Technology Data Exchange (ETDEWEB)

Al-Omair, A.; Helaleh, M.I.H. [Kuwait Inst. for Scientific Research (KISR), Central Analytical Lab. (CAL), Safat (Kuwait)

2004-06-01

A rapid analytical method based on Soxhlet extraction has been developed for determination of polycyclic aromatic hydrocarbons (PAH) in palm dates and tuna fish. The method is based on selected ion-storage gas chromatography-mass spectrometry. In the work discussed we were interested in the analysis of 16 polycyclic aromatic hydrocarbons (PAH) regarded by the EPA as priority pollutants. Soxhlet extraction of real, fortified, and blank samples, with hexane as solvent, was used to extract the analytes of interest. An excellent detection limit and good relative standard deviations (RSD) were obtained and analysis time was short. The linearity and sensitivity of the method for measurement of these analytes at trace levels are discussed. (orig.)

A Structure for Population Education: Goals, Generalizations, and Behavioral Objectives.

Science.gov (United States)

Lane, Mary Turner; Wileman, Ralph E.

This book is written to assist anyone who wants to learn about, teach, or plan curricula for population education. A structure is provided that educators can use for first graders or for high school students. Chapter 1 identifies the population phenomenon and the need to study it. Chapter 2 gives the elements of the structure: goals,…

Population structure of larch forests in the Urals

Energy Technology Data Exchange (ETDEWEB)

Putenikhin, V.P.; Farukshina, G.G. [Russian Academy of Sciences, Ufa (Russian Federation). Botanical Garden Inst.

1995-12-31

The variability and population structure of larch (Larix sukaczewii Dyl.) naturally growing in the Urals was studied on the basis of biometric analysis of generative organs. The obtained results point to the existence of 11 phenotypically different local populations of Larix sukaczewii in the Urals. Four populations are identified in the South Urals: Marginal, central, high-mountainous, south-uralian and Bashkircis-uralian. Middle-uralian, Perm cis-uralian, central north-uralian and high-mountainous north-uralian populations are determined in the Middle and the North Urals. Three populations of Larix sukaczewii are identified in the Sub-Polar and the Polar Urals: Subpolar-uralian, Pechora-Thiman cisuralian and polar-uralian. 8 refs, 2 tabs

Population structure of larch forests in the Urals

Energy Technology Data Exchange (ETDEWEB)

Putenikhin, V P; Farukshina, G G [Russian Academy of Sciences, Ufa (Russian Federation). Botanical Garden Inst.

1996-12-31

The variability and population structure of larch (Larix sukaczewii Dyl.) naturally growing in the Urals was studied on the basis of biometric analysis of generative organs. The obtained results point to the existence of 11 phenotypically different local populations of Larix sukaczewii in the Urals. Four populations are identified in the South Urals: Marginal, central, high-mountainous, south-uralian and Bashkircis-uralian. Middle-uralian, Perm cis-uralian, central north-uralian and high-mountainous north-uralian populations are determined in the Middle and the North Urals. Three populations of Larix sukaczewii are identified in the Sub-Polar and the Polar Urals: Subpolar-uralian, Pechora-Thiman cisuralian and polar-uralian. 8 refs, 2 tabs

Fine-scale population structure and the era of next-generation sequencing.

Science.gov (United States)

Henn, Brenna M; Gravel, Simon; Moreno-Estrada, Andres; Acevedo-Acevedo, Suehelay; Bustamante, Carlos D

2010-10-15

Fine-scale population structure characterizes most continents and is especially pronounced in non-cosmopolitan populations. Roughly half of the world's population remains non-cosmopolitan and even populations within cities often assort along ethnic and linguistic categories. Barriers to random mating can be ecologically extreme, such as the Sahara Desert, or cultural, such as the Indian caste system. In either case, subpopulations accumulate genetic differences if the barrier is maintained over multiple generations. Genome-wide polymorphism data, initially with only a few hundred autosomal microsatellites, have clearly established differences in allele frequency not only among continental regions, but also within continents and within countries. We review recent evidence from the analysis of genome-wide polymorphism data for genetic boundaries delineating human population structure and the main demographic and genomic processes shaping variation, and discuss the implications of population structure for the distribution and discovery of disease-causing genetic variants, in the light of the imminent availability of sequencing data for a multitude of diverse human genomes.

Assessment of the population effective dose from the diagnostic use of radiopharmaceuticals in Cuba

International Nuclear Information System (INIS)

Brigido, O.; Montalvan, A.

2008-01-01

In an attempt to estimate the effective collective dose imparted to the population of Camaguey, Ciego de Avila, Las Tunas and Holguin territory, Cuba, has been made use of statistic from nuclear medicine examinations given to a population of 1.1 million inhabitants for the years 1995 through 1999. The average annual frequency of examinations was estimated to be 3.82 per 1000 population. The results show that nuclear medicine techniques of thyroid explorations with 43.73% and iodide uptake with 43.36% are the main techniques implicated in the relative contribution to the total annual effective collective dose which averaged 54.43 man·Sv for the studied period. Radiation risks for the Camaguey-Ciego de Avila population caused by nuclear medicine examinations in the period studied were calculated: the total number of fatal and non-fatal cancers was 16.33 and the number of serious hereditary disturbance was 3.54 as a result of 21073 nuclear medicine procedures. (author)

Population Genetic Structure of Peninsular Malaysia Malay Sub-Ethnic Groups

Science.gov (United States)

Hatin, Wan Isa; Nur-Shafawati, Ab Rajab; Zahri, Mohd-Khairi; Xu, Shuhua; Jin, Li; Tan, Soon-Guan; Rizman-Idid, Mohammed; Zilfalil, Bin Alwi

2011-01-01

Patterns of modern human population structure are helpful in understanding the history of human migration and admixture. We conducted a study on genetic structure of the Malay population in Malaysia, using 54,794 genome-wide single nucleotide polymorphism genotype data generated in four Malay sub-ethnic groups in peninsular Malaysia (Melayu Kelantan, Melayu Minang, Melayu Jawa and Melayu Bugis). To the best of our knowledge this is the first study conducted on these four Malay sub-ethnic groups and the analysis of genotype data of these four groups were compiled together with 11 other populations' genotype data from Indonesia, China, India, Africa and indigenous populations in Peninsular Malaysia obtained from the Pan-Asian SNP database. The phylogeny of populations showed that all of the four Malay sub-ethnic groups are separated into at least three different clusters. The Melayu Jawa, Melayu Bugis and Melayu Minang have a very close genetic relationship with Indonesian populations indicating a common ancestral history, while the Melayu Kelantan formed a distinct group on the tree indicating that they are genetically different from the other Malay sub-ethnic groups. We have detected genetic structuring among the Malay populations and this could possibly be accounted for by their different historical origins. Our results provide information of the genetic differentiation between these populations and a valuable insight into the origins of the Malay sub-ethnic groups in Peninsular Malaysia. PMID:21483678

Genetic diversity and population structure of leaf-nosed bat ...

African Journals Online (AJOL)

Genetic variation and population structure of the leaf-nosed bat Hipposideros speoris were estimated using 16S rRNA sequence and microsatellite analysis. Twenty seven distinct mitochondrial haplotypes were identified from 186 individuals, sampled from eleven populations. FST test revealed significant variations ...

Population structure and infectious disease risk in southern Africa.

Science.gov (United States)

Uren, Caitlin; Möller, Marlo; van Helden, Paul D; Henn, Brenna M; Hoal, Eileen G

2017-06-01

The KhoeSan populations are the earliest known indigenous inhabitants of southern Africa. The relatively recent expansion of Bantu-speaking agropastoralists, as well as European colonial settlement along the south-west coast, dramatically changed patterns of genetic diversity in a region which had been largely isolated for thousands of years. Owing to this unique history, population structure in southern Africa reflects both the underlying KhoeSan genetic diversity as well as differential recent admixture. This population structure has a wide range of biomedical and sociocultural implications; such as changes in disease risk profiles. Here, we consolidate information from various population genetic studies that characterize admixture patterns in southern Africa with an aim to better understand differences in adverse disease phenotypes observed among groups. Our review confirms that ancestry has a direct impact on an individual's immune response to infectious diseases. In addition, we emphasize the importance of collaborative research, especially for populations in southern Africa that have a high incidence of potentially fatal infectious diseases such as HIV and tuberculosis.

Population Structure and Evolution after Speciation of the Hokkaido Salamander (Hynobius retardatus.

Directory of Open Access Journals (Sweden)

Masatoshi Matsunami

Full Text Available The Hokkaido salamander (Hynobius retardatus is endemic to Hokkaido Island, Japan, and shows intriguing flexible phenotypic plasticity and regional morphological diversity. However, to date, allozymes and partial mitochondria DNA sequences have provided only an outline of its demographic histories and the pattern of its genetic diversification. To understand the finer details of the population structure of this species and its evolution since speciation, we genotyped five regional populations by using 12 recently developed microsatellite polymorphic markers. We found a clear population structure with low gene flow among the five populations, but a close genetic relationship between the Teshio and Kitami populations. Our demographic analysis suggested that Teshio and Erimo had the largest effective population sizes among the five populations. These findings regarding the population structure and demography of H. retardatus improve our understanding of the faunal phylogeography on Hokkaido Island and also provide fundamental genetic information that will be useful for future studies.

Diversity and population structure of red rice germplasm in Bangladesh.

Science.gov (United States)

Islam, M Z; Khalequzzaman, M; Prince, M F R K; Siddique, M A; Rashid, E S M H; Ahmed, M S U; Pittendrigh, B R; Ali, M P

2018-01-01

While the functionality and healthy food value of red rice have increased its popularity, such that market demand for it is expected to rise, most strains suffer from low grain yield. To perform diversity and population structure analyses of red rice germplasm, therefore, becomes essential for improving yields for commercial production. In this study, fifty red rice germplasm from the Bangladesh Rice Research Institute (BRRI) genebank were characterized both morphologically and genetically using fifty simple sequence repeat (SSR) markers. Overall, 162 alleles were detected by the markers with the detected allele number varying from two to seven. Additionally, 22 unique alleles were identified for use as a germplasm diagnostic tool. The highest and lowest polymorphic information content (PIC) indices were 0.75 and 0.04 found in markers RM282 and RM304, respectively, and genetic diversity was moderate, varying from 0.05 to 0.78 (average: 0.35). While phylogenetic cluster analysis of the fifteen distance-based agro-morphological traits divided the germplasm into five clusters (I, II, III, IV and V), a similar SSR analysis yielded only three major groups (I, II, and III), and a model-based population structure analysis yielded four (A, B, C and D). Both principal component and neighbors joining tree analysis from the population structure method showed the tested germplasm as highly diverse in structure. Moreover, an analysis of molecular variance (AMOVA), as well as a pairwise FST analysis, both indicated significant differentiation (ranging from 0.108 to 0.207) among all pairs of populations, suggesting that all four population structure groups differed significantly. Populations A and D were the most differentiated from each other by FST. Findings from this study suggest that the diverse germplasm and polymorphic trait-linked SSR markers of red rice are suitable for the detection of economically desirable trait loci/genes for use in future molecular breeding programs.

Using Genome-Wide SNPs to Detect Structure in High-Diversity and Low-Divergence Populations of Severely Impacted Eastern Tropical Pacific Spinner (Stenella longirostris And Pantropical Spotted Dolphins (S. attenuata

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Matthew Steven Leslie

2016-12-01

Full Text Available Millions of spinner (Stenella longirostris and pantropical spotted dolphins (Stenella attenuata died since the 1960’s as bycatch in tuna nets in the eastern tropical Pacific Ocean. Despite three decades of protection, they show little-to-no sign of recovery (although recent fisheries-independent abundance estimates are not available. In efforts to establish biologically meaningful management boundaries for recovery, endemic subspecies and multiple stocks have been proposed. However, genetic differentiation among most of these units has been difficult to identify, possibly due to low statistical power stemming from large historical abundances, ongoing gene flow, and recent divergence. We tested for genetic structure at multiple hierarchical levels by analyzing the largest dataset to date brought to bear on these questions. Single nucleotide polymorphisms (SNPs were collected from nuclear DNA regions associated with the restriction enzyme site PstI from 72 spinner dolphins and 58 pantropical spotted dolphins using genotype-by-sequencing (GBS. Our results support the current subspecies for both species and indicate stock-level separation for Tres Marias spinner dolphins and the two offshore pantropical spotted dolphin stocks in this area. Although bycatch has been reduced a small fraction of pre-protection levels, incidental mortality continues to impact these populations. Our results are important for the ongoing management and recovery of these highly-impacted pelagic dolphins in the eastern tropical Pacific Ocean.

Estimation of age structure of fish populations from length-frequency data

International Nuclear Information System (INIS)

Kumar, K.D.; Adams, S.M.

1977-01-01

A probability model is presented to determine the age structure of a fish population from length-frequency data. It is shown that when the age-length key is available, maximum-likelihood estimates of the age structure can be obtained. When the key is not available, approximate estimates of the age structure can be obtained. The model is used for determination of the age structure of populations of channel catfish and white crappie. Practical applications of the model to impact assessment are discussed

THE FORMATION OF THE LOCAL MUSICAL IDENTITY OF THE CITIZEN FROM LAS TUNAS / LA FORMACIÓN DE LA IDENTIDAD MUSICAL LOCAL DEL TUNERO

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Elemnia Álvarez Merino

2012-09-01

Full Text Available The local music identity, part of the system of identity values, encourages contributing to training in the art instructors of the Bachelor of Education Art Instructor specialty. This paper aims to demonstrate how you can promote the teaching and learning of music from the study of the contents of the musical works of the town, musicians, composers, groups of small and large format and repertoire, Web Site by: Music and musicians from Las Tunas, made for this purpose and offers detailed information on major music events occurred in the town of Las Tunas, since the 40's to today where we find also images and sound with processed information form of hypertext, standard format for you to view information, also offers a proposal made by the authors in order to treat this content in the classroom and beyond, to achieve success in social and cultural transformations that allow to transmit their knowledge maintain its historical and cultural identity, improve the quality of their educational work taking into account the technical scientific advances, in the student to the historical and musical knowledge, experiences, experiential and cultural contributions they receive will contribute to the formation of the identity in the process of forming intentional, organized and systematic.

Population structure of Vibrio fischeri within the light organs of Euprymna scolopes squid from Two Oahu (Hawaii) populations.

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Wollenberg, M S; Ruby, E G

2009-01-01

We resolved the intraspecific diversity of Vibrio fischeri, the bioluminescent symbiont of the Hawaiian sepiolid squid Euprymna scolopes, at two previously unexplored morphological and geographical scales. These scales ranged from submillimeter regions within the host light organ to the several kilometers encompassing two host populations around Oahu. To facilitate this effort, we employed both novel and standard genetic and phenotypic assays of light-organ symbiont populations. A V. fischeri-specific fingerprinting method and five phenotypic assays were used to gauge the genetic richness of V. fischeri populations; these methods confirmed that the symbiont population present in each adult host's light organ is polyclonal. Upon statistical analysis of these genetic and phenotypic population data, we concluded that the characteristics of symbiotic populations were more similar within individual host populations than between the two distinct Oahu populations of E. scolopes, providing evidence that local geographic symbiont population structure exists. Finally, to better understand the genesis of symbiont diversity within host light organs, the process of symbiosis initiation in newly hatched juvenile squid was examined both experimentally and by mathematical modeling. We concluded that, after the juvenile hatches, only one or two cells of V. fischeri enter each of six internal epithelium-lined crypts present in the developing light organ. We hypothesize that the expansion of different, crypt-segregated, clonal populations creates the polyclonal adult light-organ population structure observed in this study. The stability of the luminous-bacterium-sepiolid squid mutualism in the presence of a polyclonal symbiont population structure is discussed in the context of contemporary evolutionary theory.

Evolutionary genomics and population structure of Entamoeba histolytica

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Koushik Das

2014-11-01

Full Text Available Amoebiasis caused by the gastrointestinal parasite Entamoeba histolytica has diverse disease outcomes. Study of genome and evolution of this fascinating parasite will help us to understand the basis of its virulence and explain why, when and how it causes diseases. In this review, we have summarized current knowledge regarding evolutionary genomics of E. histolytica and discussed their association with parasite phenotypes and its differential pathogenic behavior. How genetic diversity reveals parasite population structure has also been discussed. Queries concerning their evolution and population structure which were required to be addressed have also been highlighted. This significantly large amount of genomic data will improve our knowledge about this pathogenic species of Entamoeba.

Shallow Population Genetic Structures of Thread-sail Filefish (Stephanolepis cirrhifer) Populations from Korean Coastal Waters.

Science.gov (United States)

Yoon, M; Park, W; Nam, Y K; Kim, D S

2012-02-01

Genetic diversities, population genetic structures and demographic histories of the thread-sail filefish Stephanolepis cirrhifer were investigated by nucleotide sequencing of 336 base pairs of the mitochondrial DNA (mtDNA) control region in 111 individuals collected from six populations in Korean coastal waters. A total of 70 haplotypes were defined by 58 variable nucleotide sites. The neighbor-joining tree of the 70 haplotypes was shallow and did not provide evidence of geographical associations. Expansion of S. cirrhifer populations began approximate 51,000 to 102,000 years before present, correlating with the period of sea level rise since the late Pleistocene glacial maximum. High levels of haplotype diversities (0.974±0.029 to 1.000±0.076) and nucleotide diversities (0.014 to 0.019), and low levels of genetic differentiation among populations inferred from pairwise population F ST values (-0.007 to 0.107), support an expansion of the S. cirrhifer population. Hierarchical analysis of molecular variance (AMOVA) revealed weak but significant genetic structures among three groups (F CT = 0.028, p<0.05), and no genetic variation within groups (0.53%; F SC = 0.005, p = 0.23). These results may help establish appropriate fishery management strategies for stocks of S. cirrhifer and related species.

The Genetic Structure of Wild Orobanche cumana Wallr. (Orobanchaceae Populations in Eastern Bulgaria Reflects Introgressions from Weedy Populations

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Rocío Pineda-Martos

2014-01-01

Full Text Available Orobanche cumana is a holoparasitic plant naturally distributed from central Asia to south-eastern Europe, where it parasitizes wild Asteraceae species. It is also an important parasitic weed of sunflower crops. The objective of this research was to investigate genetic diversity, population structure, and virulence on sunflower of O. cumana populations parasitizing wild plants in eastern Bulgaria. Fresh tissue of eight O. cumana populations and mature seeds of four of them were collected in situ on wild hosts. Genetic diversity and population structure were studied with SSR markers and compared to weedy populations. Two main gene pools were identified in Bulgarian populations, with most of the populations having intermediate characteristics. Cross-inoculation experiments revealed that O. cumana populations collected on wild species possessed similar ability to parasitize sunflower to those collected on sunflower. The results were explained on the basis of an effective genetic exchange between populations parasitizing sunflower crops and those parasitizing wild species. The occurrence of bidirectional gene flow may have an impact on wild populations, as new physiological races continuously emerge in weedy populations. Also, genetic variability of wild populations may favour the ability of weedy populations to overcome sunflower resistance mechanisms.

The Genetic Structure of Wild Orobanche cumana Wallr. (Orobanchaceae) Populations in Eastern Bulgaria Reflects Introgressions from Weedy Populations

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Pineda-Martos, Rocío; Pujadas-Salvà, Antonio J.; Fernández-Martínez, José M.; Stoyanov, Kiril; Pérez-Vich, Begoña

2014-01-01

Orobanche cumana is a holoparasitic plant naturally distributed from central Asia to south-eastern Europe, where it parasitizes wild Asteraceae species. It is also an important parasitic weed of sunflower crops. The objective of this research was to investigate genetic diversity, population structure, and virulence on sunflower of O. cumana populations parasitizing wild plants in eastern Bulgaria. Fresh tissue of eight O. cumana populations and mature seeds of four of them were collected in situ on wild hosts. Genetic diversity and population structure were studied with SSR markers and compared to weedy populations. Two main gene pools were identified in Bulgarian populations, with most of the populations having intermediate characteristics. Cross-inoculation experiments revealed that O. cumana populations collected on wild species possessed similar ability to parasitize sunflower to those collected on sunflower. The results were explained on the basis of an effective genetic exchange between populations parasitizing sunflower crops and those parasitizing wild species. The occurrence of bidirectional gene flow may have an impact on wild populations, as new physiological races continuously emerge in weedy populations. Also, genetic variability of wild populations may favour the ability of weedy populations to overcome sunflower resistance mechanisms. PMID:25143963

Preparation and characterization of protein isolate from Yellowfin tuna Thunnus albacares roe by isoelectric solubilization/precipitation process

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Hyun Ji Lee

2016-05-01

Full Text Available Abstract Isoelectric solubilization/precipitation (ISP processing allows selective, pH-induced water solubility of proteins with concurrent separation of lipids and removal of materials not intended for human consumption such as bone, scales, skin, etc. Recovered proteins retain functional properties and nutritional value. Four roe protein isolates (RPIs from yellowfin tuna roe were prepared under different solubilization and precipitation condition (pH 11/4.5, pH 11/5.5, pH 12/4.5 and pH 12/5.5. RPIs contained 2.3–5.0 % moisture, 79.1–87.8 % protein, 5.6–7.4 % lipid and 3.0–3.8 % ash. Protein content of RPI-1 and RPI-2 precipitated at pH 4.5 and 5.5 after alkaline solubilization at pH 11, was higher than those of RPI-3 and RPI-4 after alkaline solubilization at pH 12 (P < 0.05. Lipid content (5.6–7.4 % of RPIs was lower than that of freeze-dried concentrate (10.6 %. And leucine and lysine of RPIs were the most abundant amino acids (8.8–9.4 and 8.5–8.9 g/100 g protein, respectively. S, Na, P, K as minerals were the major elements in RPIs. SDS-PAGE of RPIs showed bands at 100, 45, 25 and 15 K. Moisture and protein contents of process water as a 2’nd byproduct were 98.9–99.0 and 1.3–1.8 %, respectively. Therefore, yellowfin tuna roe isolate could be a promising source of valuable nutrients for human food and animal feeds.

Evaluación del estado mental de los pacientes centenarios en Las Tunas, diciembre 2007- agosto 2008

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Lisset del Carmen Romero Portelles

2015-12-01

Full Text Available El envejecimiento de la población en Cuba es similar al de muchos países desarrollados, y se encuentra entre los que tienen un índice más elevado dentro del grupo de países en desarrollo. Se realizó un trabajo descriptivo observacional  en la provincia de Las Tunas, en el período diciembre 2007- agosto 2008, con el propósito de caracterizar el estado cognitivo-afectivo de los centenarios. El universo estuvo  constituido por 97 ancianos; una vez validada su edad, la muestra quedó conformada con 95 centenarios. Se aplicaron los instrumentos Mini-Mental State Examination (MMSE y Clinical Dementia Rating Scale (CDR y se estudiaron las siguientes variables: estado cognitivo, estado de ánimo, satisfacción con la vida, nivel de tensión y la percepción de eventos vitales. El dato primario provino de las entrevistas realizadas, y para el análisis estadístico se creó una hoja de cálculo en Excel. Se utilizaron técnicas de distribución de frecuencias; para las variables cuantitativas se empleó la proporción en porcentaje. En la muestra de individuos centenarios que vivían en la provincia de Las Tunas, al momento del estudio, predominaron los que no presentaban deterioro cognitivo ni depresión, tuvieron  satisfacción alta con la vida, nivel bajo de tensión y no se afectaban con los eventos vitales. Las positivas características psicológicas y de resiliencia, unidas a un entorno psicosocial favorable, se relacionan con la larga supervivencia de los individuos estudiados.

Heavy metals in yellowfin tuna (Thunnus albacares) and common dolphinfish (Coryphaena hippurus) landed on the Ecuadorian coast

Energy Technology Data Exchange (ETDEWEB)

Araújo, Cristiano V.M., E-mail: cristiano.araujo@icman.csic.es [Central Department of Research (DCI), Ecuadorian Aquatic Ecotoxicology (ECUACTOX) group, Universidad Laica Eloy Alfaro de Manabí - ULEAM, Manta (Ecuador); Centre of Functional Ecology (CFE), Department of Life Sciences, University of Coimbra, Coimbra (Portugal); Cedeño-Macias, Luis A. [Central Department of Research (DCI), Ecuadorian Aquatic Ecotoxicology (ECUACTOX) group, Universidad Laica Eloy Alfaro de Manabí - ULEAM, Manta (Ecuador); Faculty of Marine Sciences, Universidad Laica Eloy Alfaro de Manabí (ULEAM), Manta (Ecuador)

2016-01-15

Heavy metals are contaminants of great environmental concern due to their multiple origins (natural and anthropogenic), the ability to accumulate in organs and tissues, and the deleterious effects they can cause in organisms. Studies on the accumulation of metals in seafood, such as fish, have increased in importance due to the risk for human health when consuming fish contaminated by metals. The present work was aimed at verifying the concentrations of cadmium (Cd), mercury (Hg) and lead (Pb) in the muscular tissue and liver of yellowfin tuna (Thunnus albacares) and common dolphinfish (Coryphaena hippurus) from the Eastern Pacific Ocean landed in Manta city, Ecuador. Samples were analyzed by inductively coupled plasma mass spectroscopy (ICP-MS). Around half of the muscle samples of both species presented levels of Cd and Hg above the limits considered safe for human consumption established by the European Union. For Pb, most of the muscle samples were considered acceptable for consumption. Results indicate that both species should be consumed with some caution. Considering the tolerable weekly intake recommended for adults by the World Health Organization, results indicate that Hg is the main metal that limits the consumption of yellowfin tuna and common dolphinfish, with a recommended maximum ingestion, respectively, of 191 and 178 g per week for an adult. - Highlights: • Thunnus albacares and Coryphaena hippurus from Eastern Pacific (Ecuador) were sampled. • Muscle and liver of both species were assessed for Cd, Hg and Pb concentrations. • Levels of Pb were considered acceptable for both species. • High levels of Cd and Hg in both species can be considered unsafe for human health. • For both species the recommended maximum ingestion is around 180 g week{sup −1} for an adult.

Population structure of Staphylococcus aureus in China

NARCIS (Netherlands)

Yan, Xiaomei

2015-01-01

The present PhD research was aimed at analysing the population structure of Staphylococcus aureus in China. Between 2000 and 2005 we found that patients from a single Chinese hospital showed increasing trends in antimicrobial resistance. Among methicillin-resistant S. aureus (MRSA), resistance

Social structural consequences of population growth.

Science.gov (United States)

Adams, R E

1981-01-01

Estimates from archaeological data of the numbers in the elite classes, nonelite occupational specialists, density of population, city size, and size of political units in the ancient Maya civilization suggest that there was a quantum shift in rate of development in the Early Classic period, associated with intensification of agriculture, and that the social structure approximated to a generalized feudal pattern.

Patterns of admixture and population structure in native populations of Northwest North America.

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Paul Verdu

2014-08-01

Full Text Available The initial contact of European populations with indigenous populations of the Americas produced diverse admixture processes across North, Central, and South America. Recent studies have examined the genetic structure of indigenous populations of Latin America and the Caribbean and their admixed descendants, reporting on the genomic impact of the history of admixture with colonizing populations of European and African ancestry. However, relatively little genomic research has been conducted on admixture in indigenous North American populations. In this study, we analyze genomic data at 475,109 single-nucleotide polymorphisms sampled in indigenous peoples of the Pacific Northwest in British Columbia and Southeast Alaska, populations with a well-documented history of contact with European and Asian traders, fishermen, and contract laborers. We find that the indigenous populations of the Pacific Northwest have higher gene diversity than Latin American indigenous populations. Among the Pacific Northwest populations, interior groups provide more evidence for East Asian admixture, whereas coastal groups have higher levels of European admixture. In contrast with many Latin American indigenous populations, the variance of admixture is high in each of the Pacific Northwest indigenous populations, as expected for recent and ongoing admixture processes. The results reveal some similarities but notable differences between admixture patterns in the Pacific Northwest and those in Latin America, contributing to a more detailed understanding of the genomic consequences of European colonization events throughout the Americas.

Anaerobic digestion of tuna waste for the production of volatile fatty acids.

Science.gov (United States)

Bermúdez-Penabad, Noela; Kennes, Christian; Veiga, Maria C

2017-10-01

Fish canning industries generate a significant amount of solid waste that can be digested anaerobically into volatile fatty acids (VFA). The aim of this research was to study the effect of various pHs, ranging from 5.0 to 10.0, and percentage of total solids on the anaerobic digestion of tuna waste into VFA, both in batch assays and continuous reactor. The production of VFA was affected by pH and was significantly higher under alkaline conditions. At pH 8.0, the VFA production reached 30,611mgCOD/L. The VFA mainly consisted of acetic, propionic, n-butyric and i-valeric acids. Acetic acid was the main product at all the pHs tested. In terms of total solids (TS) the best results were obtained with 2.5% total solids, reaching 0.73gCOD VFA /gCOD waste . At higher TS concentrations (5 and 8% TS) lower yields were reached probably due to inhibition at high VFA concentration. Copyright © 2017 Elsevier Ltd. All rights reserved.

Genetic structure of populations and differentiation in forest trees

Science.gov (United States)

Raymond P. Guries; F. Thomas Ledig

1981-01-01

Electrophoretic techniques permit population biologists to analyze genetic structure of natural populations by using large numbers of allozyme loci. Several methods of analysis have been applied to allozyme data, including chi-square contingency tests, F-statistics, and genetic distance. This paper compares such statistics for pitch pine (Pinus rigida...

Spatial and temporal variability in the trans-Pacific migration of Pacific bluefin tuna (Thunnus orientalis) revealed by archival tags

Science.gov (United States)

Fujioka, Ko; Fukuda, Hiromu; Tei, Yaoki; Okamoto, Suguru; Kiyofuji, Hidetada; Furukawa, Seishiro; Takagi, Junichi; Estess, Ethan; Farwell, Charles J.; Fuller, Daniel W.; Suzuki, Nobuaki; Ohshimo, Seiji; Kitagawa, Takashi

2018-03-01

Archival electronic tags were internally implanted in 713 age-0 Pacific bluefin tuna (PBF) caught in their nursery waters off the southern coast of Japan and in the East China Sea over an extended study period (1995-2015) to clarify the spatial and temporal variability of their trans-Pacific migration. Two hundred twenty-five of these tagged tuna were recaptured by fisheries (31.6%), and we successfully retrieved tag data from 14 of 21 individuals recovered in the Eastern pacific. Furthermore, one archival tag recovered in the Western Pacific revealed that the individual had performed a trans-Pacific migration, so in total 21 tagged PBF were shown to have migrated to the Eastern Pacific (2.9% of the total tags released). We successfully downloaded data from 15 of these 21 archival tags, which revealed that some age-1 PBF migrate rapidly (123.9 ± 82.8 km day-1) and directly from waters offshore of Japan to the eastern Pacific (160.0°E to 130.0°W), a journey that takes an average of 2.5 months (ranging from 1.2 to 5.5 months) through relatively cool waters (14.7 ± 2.0 °C). All juvenile PBF began their trans-Pacific migration shortly after exposure to cooler water temperatures (physiological challenge for this age class. Three patterns were identified in the timing of the departure of juvenile PBF from the western Pacific: departing 12-14 months post-hatch (N = 7) in early summer (May-July), departing 17-19 months post-hatch (N = 7) in late autumn (October-December), and departing 21 months post-hatch (N = 1) in late winter (February). The PBF tagged along the southern coast of Japan (SCJ) arrived in the eastern Pacific earlier than those tagged in the East China Sea (ECS), most likely due to the shorter travel distance. Additionally, the PBF that began their trans-Pacific migration in the earlier period remained in an offshore foraging zone (the Kuroshio-Oyashio transition region) for shorter periods (2.8 months on average) and at lower latitudes (35.0�

Age structure changes and extraordinary lifespan in wild medfly populations.

Science.gov (United States)

Carey, James R; Papadopoulos, Nikos T; Müller, Hans-Georg; Katsoyannos, Byron I; Kouloussis, Nikos A; Wang, Jane-Ling; Wachter, Kenneth; Yu, Wei; Liedo, Pablo

2008-06-01

The main purpose of this study was to test the hypotheses that major changes in age structure occur in wild populations of the Mediterranean fruit fly (medfly) and that a substantial fraction of individuals survive to middle age and beyond (> 3-4 weeks). We thus brought reference life tables and deconvolution models to bear on medfly mortality data gathered from a 3-year study of field-captured individuals that were monitored in the laboratory. The average time-to-death of captured females differed between sampling dates by 23.9, 22.7, and 37.0 days in the 2003, 2004, and 2005 field seasons, respectively. These shifts in average times-to-death provided evidence of changes in population age structure. Estimates indicated that middle-aged medflies (> 30 days) were common in the population. A surprise in the study was the extraordinary longevity observed in field-captured medflies. For example, 19 captured females but no reference females survived in the laboratory for 140 days or more, and 6 captured but no reference males survived in the laboratory for 170 days or more. This paper advances the study of aging in the wild by introducing a new method for estimating age structure in insect populations, demonstrating that major changes in age structure occur in field populations of insects, showing that middle-aged individuals are common in the wild, and revealing the extraordinary lifespans of wild-caught individuals due to their early life experience in the field.

Dynamics of a physiologically structured population in a time-varying environment

DEFF Research Database (Denmark)

Heilmann, Irene Louise Torpe; Starke, Jens; Andersen, Ken Haste

2016-01-01

Physiologically structured population models have become a valuable tool to model the dynamics of populations. In a stationary environment such models can exhibit equilibrium solutions as well as periodic solutions. However, for many organisms the environment is not stationary, but varies more...... or less regularly. In order to understand the interaction between an external environmental forcing and the internal dynamics in a population, we examine the response of a physiologically structured population model to a periodic variation in the food resource. We explore the addition of forcing in two...... cases: (A) where the population dynamics is in equilibrium in a stationary environment, and (B) where the population dynamics exhibits a periodic solution in a stationary environment. When forcing is applied in case A, the solutions are mainly periodic. In case B the forcing signal interacts...

Spawning Dynamics and Size Related Trends in Reproductive Parameters of Southern Bluefin Tuna, Thunnus maccoyii.

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Jessica H Farley

Full Text Available Knowledge of spawning behaviour and fecundity of fish is important for estimating the reproductive potential of a stock and for constructing appropriate statistical models for assessing sustainable catch levels. Estimates of length-based reproductive parameters are particularly important for determining potential annual fecundity as a function of fish size, but they are often difficult to estimate reliably. Here we provide new information on the reproductive dynamics of southern bluefin tuna (SBT Thunnus maccoyii through the analysis of fish size and ovary histology collected on the spawning ground in 1993-1995 and 1999-2002. These are used to refine previous parameter estimates of spawning dynamics and investigate size related trends in these parameters. Our results suggest that the small SBT tend to arrive on the spawning ground slightly later and depart earlier in the spawning season relative to large fish. All females were mature and the majority were classed as spawning capable (actively spawning or non-spawning with a very small proportion classed as regressing. The fraction of females spawning per day decreased with fish size, but once females start a spawning episode, they spawned daily irrespective of size. Mean batch fecundity was estimated directly at 6.5 million oocytes. Analysis of ovary histology and ovary weight data indicated that relative batch fecundity, and the duration of spawning and non-spawning episodes, increased with fish size. These reproductive parameter estimates could be used with estimates of residency time on the spawning ground as a function of fish size (if known and demographic data for the spawning population to provide a time series of relative annual fecundity for SBT.

Constructing stage-structured matrix population models from life tables: comparison of methods

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Masami Fujiwara

2017-10-01

Full Text Available A matrix population model is a convenient tool for summarizing per capita survival and reproduction rates (collectively vital rates of a population and can be used for calculating an asymptotic finite population growth rate (λ and generation time. These two pieces of information can be used for determining the status of a threatened species. The use of stage-structured population models has increased in recent years, and the vital rates in such models are often estimated using a life table analysis. However, potential bias introduced when converting age-structured vital rates estimated from a life table into parameters for a stage-structured population model has not been assessed comprehensively. The objective of this study was to investigate the performance of methods for such conversions using simulated life histories of organisms. The underlying models incorporate various types of life history and true population growth rates of varying levels. The performance was measured by comparing differences in λ and the generation time calculated using the Euler-Lotka equation, age-structured population matrices, and several stage-structured population matrices that were obtained by applying different conversion methods. The results show that the discretization of age introduces only small bias in λ or generation time. Similarly, assuming a fixed age of maturation at the mean age of maturation does not introduce much bias. However, aggregating age-specific survival rates into a stage-specific survival rate and estimating a stage-transition rate can introduce substantial bias depending on the organism’s life history type and the true values of λ. In order to aggregate survival rates, the use of the weighted arithmetic mean was the most robust method for estimating λ. Here, the weights are given by survivorship curve after discounting with λ. To estimate a stage-transition rate, matching the proportion of individuals transitioning, with λ used

Population structure of barley landrace populations and gene-flow with modern varieties.

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Elisa Bellucci

Full Text Available Landraces are heterogeneous plant varieties that are reproduced by farmers as populations that are subject to both artificial and natural selection. Landraces are distinguished by farmers due to their specific traits, and different farmers often grow different populations of the same landrace. We used simple sequence repeats (SSRs to analyse 12 barley landrace populations from Sardinia from two collections spanning 10 years. We analysed the population structure, and compared the population diversity of the landraces that were collected at field level (population. We used a representative pool of barley varieties for diversity comparisons and to analyse the effects of gene flow from modern varieties. We found that the Sardinian landraces are a distinct gene pool from those of both two-row and six-row barley varieties. There is also a low, but significant, mean level and population-dependent level of introgression from the modern varieties into the Sardinian landraces. Moreover, we show that the Sardinian landraces have the same level of gene diversity as the representative sample of modern commercial varieties grown in Italy in the last decades, even within population level. Thus, these populations represent crucial sources of germplasm that will be useful for crop improvement and for population genomics studies and association mapping, to identify genes, loci and genome regions responsible for adaptive variations. Our data also suggest that landraces are a source of valuable germplasm for sustainable agriculture in the context of future climate change, and that in-situ conservation strategies based on farmer use can preserve the genetic identity of landraces while allowing adaptation to local environments.

Earthworm ecology affects the population structure of their Verminephrobacter symbionts

DEFF Research Database (Denmark)

Macedo Viana, Flavia Daniela; Jensen, Christopher Erik; Macey, Michael

2016-01-01

from two contrasting ecological types of earthworm hosts: the high population density, fast reproducing compost worms, Eisenia andrei and E. fetida, and the low-density, slow reproducing Aporrectodea tuberculata, commonly found in garden soils; for both types, three distinct populations were...... across host individuals from the same population. Thus, host ecology shapes the population structure of the Verminephrobacter symbionts. The homogeneous symbiont populations in the compost worms indicate that Verminephrobacter can be transferred bi-parentally or via leaky horizontal transmission in high...

Generation time, net reproductive rate, and growth in stage-age-structured populations

DEFF Research Database (Denmark)

Steiner, Uli; Tuljapurkar, Shripad; Coulson, Tim

2014-01-01

examples to show how reproductive timing Tc and level R0 are shaped by stage dynamics (individual trait changes), selection on the trait, and parent-offspring phenotypic correlation. We also show how population structure can affect dispersion in reproduction among ages and stages. These macroscopic...... to age-structured populations. Here we generalize this result to populations structured by stage and age by providing a new, unique measure of reproductive timing (Tc) that, along with net reproductive rate (R0), has a direct mathematical relationship to and approximates growth rate (r). We use simple...

High genetic diversity and low population structure in Porter's sunflower (Helianthus porteri).

Science.gov (United States)

Gevaert, Scott D; Mandel, Jennifer R; Burke, John M; Donovan, Lisa A

2013-01-01

Granite outcrops in the southeastern United States are rare and isolated habitats that support edaphically controlled communities dominated by herbaceous plants. They harbor rare and endemic species that are expected to have low genetic variability and high population structure due to small population sizes and their disjunct habitat. We test this expectation for an annual outcrop endemic, Helianthus porteri (Porter's sunflower). Contrary to expectation, H. porteri has relatively high genetic diversity (H e = 0.681) and relatively low genetic structure among the native populations (F ST = 0.077) when compared to 5 other Helianthus species (N = 288; 18 expressed sequence tag-SSR markers). These findings suggest greater gene flow than expected. The potential for gene flow is supported by the analysis of transplant populations established with propagules from a common source in 1959. One population established close to a native population (1.5 km) at the edge of the natural range is genetically similar to and shares rare alleles with the adjacent native population and is distinct from the central source population. In contrast, a transplant population established north of the native range has remained similar to the source population. The relatively high genetic diversity and low population structure of this species, combined with the long-term success of transplanted populations, bode well for its persistence as long as the habitat persists.

Ancestral informative marker selection and population structure visualization using sparse Laplacian eigenfunctions.

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Jun Zhang

Full Text Available Identification of a small panel of population structure informative markers can reduce genotyping cost and is useful in various applications, such as ancestry inference in association mapping, forensics and evolutionary theory in population genetics. Traditional methods to ascertain ancestral informative markers usually require the prior knowledge of individual ancestry and have difficulty for admixed populations. Recently Principal Components Analysis (PCA has been employed with success to select SNPs which are highly correlated with top significant principal components (PCs without use of individual ancestral information. The approach is also applicable to admixed populations. Here we propose a novel approach based on our recent result on summarizing population structure by graph laplacian eigenfunctions, which differs from PCA in that it is geometric and robust to outliers. Our approach also takes advantage of the priori sparseness of informative markers in the genome. Through simulation of a ring population and the real global population sample HGDP of 650K SNPs genotyped in 940 unrelated individuals, we validate the proposed algorithm at selecting most informative markers, a small fraction of which can recover the similar underlying population structure efficiently. Employing a standard Support Vector Machine (SVM to predict individuals' continental memberships on HGDP dataset of seven continents, we demonstrate that the selected SNPs by our method are more informative but less redundant than those selected by PCA. Our algorithm is a promising tool in genome-wide association studies and population genetics, facilitating the selection of structure informative markers, efficient detection of population substructure and ancestral inference.

Diversity and population structure of red rice germplasm in Bangladesh.

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M Z Islam

Full Text Available While the functionality and healthy food value of red rice have increased its popularity, such that market demand for it is expected to rise, most strains suffer from low grain yield. To perform diversity and population structure analyses of red rice germplasm, therefore, becomes essential for improving yields for commercial production. In this study, fifty red rice germplasm from the Bangladesh Rice Research Institute (BRRI genebank were characterized both morphologically and genetically using fifty simple sequence repeat (SSR markers. Overall, 162 alleles were detected by the markers with the detected allele number varying from two to seven. Additionally, 22 unique alleles were identified for use as a germplasm diagnostic tool. The highest and lowest polymorphic information content (PIC indices were 0.75 and 0.04 found in markers RM282 and RM304, respectively, and genetic diversity was moderate, varying from 0.05 to 0.78 (average: 0.35. While phylogenetic cluster analysis of the fifteen distance-based agro-morphological traits divided the germplasm into five clusters (I, II, III, IV and V, a similar SSR analysis yielded only three major groups (I, II, and III, and a model-based population structure analysis yielded four (A, B, C and D. Both principal component and neighbors joining tree analysis from the population structure method showed the tested germplasm as highly diverse in structure. Moreover, an analysis of molecular variance (AMOVA, as well as a pairwise FST analysis, both indicated significant differentiation (ranging from 0.108 to 0.207 among all pairs of populations, suggesting that all four population structure groups differed significantly. Populations A and D were the most differentiated from each other by FST. Findings from this study suggest that the diverse germplasm and polymorphic trait-linked SSR markers of red rice are suitable for the detection of economically desirable trait loci/genes for use in future molecular

ObStruct: a method to objectively analyse factors driving population structure using Bayesian ancestry profiles.

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Velimir Gayevskiy

Full Text Available Bayesian inference methods are extensively used to detect the presence of population structure given genetic data. The primary output of software implementing these methods are ancestry profiles of sampled individuals. While these profiles robustly partition the data into subgroups, currently there is no objective method to determine whether the fixed factor of interest (e.g. geographic origin correlates with inferred subgroups or not, and if so, which populations are driving this correlation. We present ObStruct, a novel tool to objectively analyse the nature of structure revealed in Bayesian ancestry profiles using established statistical methods. ObStruct evaluates the extent of structural similarity between sampled and inferred populations, tests the significance of population differentiation, provides information on the contribution of sampled and inferred populations to the observed structure and crucially determines whether the predetermined factor of interest correlates with inferred population structure. Analyses of simulated and experimental data highlight ObStruct's ability to objectively assess the nature of structure in populations. We show the method is capable of capturing an increase in the level of structure with increasing time since divergence between simulated populations. Further, we applied the method to a highly structured dataset of 1,484 humans from seven continents and a less structured dataset of 179 Saccharomyces cerevisiae from three regions in New Zealand. Our results show that ObStruct provides an objective metric to classify the degree, drivers and significance of inferred structure, as well as providing novel insights into the relationships between sampled populations, and adds a final step to the pipeline for population structure analyses.

OPTIMASI KONDISI PEMURNIAN ASAM LEMAK OMEGA-3 DARI MINYAK HASIL SAMPING PENEPUNGAN TUNA (Thunnus sp DENGAN KRISTALISASI UREA [Optimizing Conditions for the Purification of Omega-3 Fatty Acids from By-product of Tuna (Thunnus sp Meal Processing by Urea Crystallization

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Teti Estiasih1*

2009-12-01

Full Text Available Omega-3 fatty acids (-3 are proven to have health beneficial effects. Some effort had been done to obtained oil high in -3 fatty acids. Among the methods developed, urea crystallization was preferred because it is simple, economic, and result in high purity of fatty acids. A source that had not been widely explored for -3 fatty acids production is the by-product of tuna meal processing. This research studied the optimization condition for separation and purification of -3 fatty acids from the by-product of tuna meal processing by urea crystallization. Crystallization reaction conditions of urea inclusion were optimized using the response surface methodology, and the model was developed.Optimization result showed a quadratic polynomial regression equation of Y= 140,52677X1 + 8,38203X2 – 19,85850X12 – 0,12173X22 – 0,74000X1X2 – 240,33546 with X1=urea to fatty acid ratio and X2=crystallization time. Maximum response was obtained at urea to fatty acid ratio of 3,07:1,crystallization time of 25,10 hours, and predicted response was 80,60%. Analysis of variance showed that urea to fatty acid ratio and crystallization time affected response. Under optimal conditions, the product was 3.89 times concentrated and the purity of -3 fatty acids was 81,98%. Verification result revealed that the predicted value from this model was reasonably close to the experimentally observed value. Urea crystallization process changed quality parameters that were oxidation level (peroxide value, anisidin value, and totox value, Fe and Cu content, P content, and water content. The changes were caused by adsorption of primary and secondary oxidation products, part of metals, and phosphoric compound onto unsaponifiable matters or soluble into water.

Population structure of Aggarwals of north India as revealed by molecular markers.

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Gupta, Vipin; Khadgawat, Rajesh; Ng, Hon Keung Tony; Kumar, Satish; Rao, Vadlamudi Raghavendra; Sachdeva, Mohinder Pal

2010-12-01

Using molecular genetic data on Aggarwals (Vaish/Vysya), an endogamous population group of north India, we provide evidence of its homogeneous unstratified population structure. We found the mean average heterozygosity value of 0.33 for 14 single nucleotide polymorphisms belonging to four genes (TCF7L2-, HHEX-, KCNJ11-, and ADIPOQ-) in the Aggarwal population (sample of 184 individuals) and tried to evaluate the genomic efficiency of endogamy in this population with the help of clan-based stratified analysis. We concluded that the sociocultural identity of the endogamous population groups could act as a robust proxy maker for inferring their homogeneity and population structure in India, which is ideal also for population selection for future genome-wide association studies in the country.

Population genetic structure, linkage disequilibrium and effective population size of conserved and extensively raised village chicken populations of Southern Africa

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Khulekhani Sedwell Khanyile

2015-02-01

Full Text Available Extensively raised village chickens are considered a valuable source of biodiversity, with genetic variability developed over thousands of years that ought to be characterised and utilized. Surveys that can reveal a population’s genetic structure and provide an insight into its demographic history will give valuable information to manage and conserve important indigenous animal genetic resources. This study reports population diversity and structure, linkage disequilibrium and effective population sizes of Southern African village chickens and conservation flocks from South Africa. DNA samples from 312 chickens from South African village and conservation flocks (n =146, Malawi (n =30 and Zimbabwe (n =136 were genotyped using the Illumina iSelect chicken SNP60K BeadChip. Population genetic structure analysis distinguished the four conservation flocks from the village chicken populations. Of the four flocks, the Ovambo clustered closer to the village chickens particularly those sampled from South Africa. Clustering of the village chickens followed a geographic gradient whereby South African chickens were closer to those from Zimbabwe than to chickens from Malawi. Different conservation flocks seemed to have maintained different components of the ancestral genomes with a higher proportion of village chicken diversity found in the Ovambo population. Overall population LD averaged over chromosomes ranged from 0.03 ± 0.07 to 0.58 ± 0.41 and averaged 0.15 ± 0.16. Higher LD, ranging from 0.29-0.36, was observed between SNP markers that were less than 10kb apart in the conservation flocks. LD in the conservation flocks steadily decreased to 0.15 (PK and 0.24 (VD at SNP marker interval of 500kb. Genomewide LD decay in the village chickens from Malawi, Zimbabwe and South Africa followed a similar trend as the conservation flocks although the mean LD values for the investigated SNP intervals were lower. The results suggest low effective population

PERCEPCIÓN DE PRODUCTORES DE TABACO SOBRE INSECTOS PLAGAS Y SU MANEJO EN EL MUNICIPIO JESÚS MENÉNDEZ (LAS TUNAS)

OpenAIRE

Rivas, A; Rivas, R; Hinojosa, D; Pérez, J.C; Méndez, A; Martínez, M.A

2012-01-01

El tránsito hacia un desarrollo agrario sostenible requiere un acercamiento inicial al estado del conocimiento y a la sensibilización de los actores en relación con los problemas de su entorno local. Con el objetivo de evaluar la percepción fitoproteccionista de productores de tabaco acerca de los insectos plagas en el cultivo y su manejo en el municipio Jesús Menéndez (provincia Las Tunas), se desarrolló el presente estudio. Se utilizó como método la entrevista semi estructurada aplicada a u...

Valorisation of tuna processing waste biomass for recovery of functional and antioxidant peptides using enzymatic hydrolysis and membrane fractionation process.

Science.gov (United States)

Saidi, Sami; Ben Amar, Raja

2016-10-01

The enzymatic hydrolysis using Prolyve BS coupled to membrane process (Ultrafiltration (UF) and nanofiltration (NF)) is a means of biotransformation of tuna protein waste to Tuna protein hydrolysate (TPH) with higher added values. This method could be an effective solution for the production of bioactive compounds used in various biotechnological applications and minimizing the pollution problems generated by the seafood processing industries. The amino acid composition, functional and antioxidant properties of produced TPH were evaluated. The results show that the glutamic acid, aspartic acid, glycine, alaline, valine and leucine were the major amino acids detected in the TPH profile. After membrane fractionation process, those major amino acids were concentrated in the NF retentate (NFR). The NFR and NF permeate (NFP) have a higher protein solubility (>95 %) when compared to TPH (80 %). Higher oil and water binding capacity were observed in TPH and higher emulsifying and foam stability was found in UF retentate. The NFP showed the highest DPPH radical scavenging activity (65 %). The NFR contained antioxidant amino acid (30.3 %) showed the highest superoxide radical and reducing power activities. The TPH showed the highest iron chelating activity (75 %) compared to other peptide fractions. The effect of the membrane fractionation on the molecular weight distribution of the peptide and their bioactivities was underlined. We concluded that the TPH is a valuable source of bioactive peptides and their peptide fractions may serve as useful ingredients for application in food industry and formulation of nutritional products.

Trading Stages: Life Expectancies in Structured Populations

Science.gov (United States)

Tuljapurkar, Shripad; Coulson, Tim; Horvitz, Carol

2012-01-01

Interest in stage-and age structured models has recently increased because they can describe quantitative traits such as size that are left out of age-only demography. Available methods for the analysis of effects of vital rates on lifespan in stage-structured models have not been widely applied because they are hard to use and interpret, and tools for age and stage structured populations are missing. We present easily interpretable expressions for the sensitivities and elasticities of life expectancy to vital rates in age-stage models, and illustrate their application with two biological examples. Much of our approach relies on trading of time and mortality risk in one stage for time and risk in others. Our approach contributes to the new framework of the study of age- and stage-structured biodemography. PMID:22664576

Genetic diversity and population structure of endangered Aquilaria ...

Indian Academy of Sciences (India)

2015-12-03

Dec 3, 2015 ... ... Aromatic and Economic Plants, CSIR - North-East Institute of Science and Technology ... and population structure is receiving tremendous attention for effective .... unreliable detection and to increase the quality of data. The.

Genetic diversity and population structure of Sitodiplosis mosellana in Northern China.

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Yun Duan

Full Text Available The wheat midge, Sitodiplosis mosellana, is an important pest in Northern China. We tested the hypothesis that the population structure of this species arises during a range expansion over the past 30 years. This study used microsatellite and mitochondrial loci to conduct population genetic analysis of S. mosellana across its distribution range in China. We found strong genetic structure among the 16 studied populations, including two genetically distinct groups (the eastern and western groups, broadly consistent with the geography and habitat fragmentation. These results underline the importance of natural barriers in impeding dispersal and gene flow of S. mosellana populations. Low to moderate genetic diversity among the populations and moderate genetic differentiation (F ST = 0.117 between the two groups were also found. The populations in the western group had lower genetic diversity, higher genetic differentiation and lower gene flow (F ST = 0.116, Nm = 1.89 than those in the eastern group (F ST = 0.049, Nm = 4.91. Genetic distance between populations was positively and significantly correlated with geographic distance (r = 0.56, P<0.001. The population history of this species provided no evidence for population expansion or bottlenecks in any of these populations. Our data suggest that the distribution of genetic diversity, genetic differentiation and population structure of S. mosellana have resulted from a historical event, reflecting its adaptation to diverse habitats and forming two different gene pools. These results may be the outcome of a combination of restricted gene flow due to geographical and environmental factors, population history, random processes of genetic drift and individual dispersal patterns. Given the current risk status of this species in China, this study can offer useful information for forecasting outbreaks and designing effective pest management programs.

Population structure and genomic inbreeding in nine Swiss dairy cattle populations.

Science.gov (United States)

Signer-Hasler, Heidi; Burren, Alexander; Neuditschko, Markus; Frischknecht, Mirjam; Garrick, Dorian; Stricker, Christian; Gredler, Birgit; Bapst, Beat; Flury, Christine

2017-11-07

Domestication, breed formation and intensive selection have resulted in divergent cattle breeds that likely exhibit their own genomic signatures. In this study, we used genotypes from 27,612 autosomal single nucleotide polymorphisms to characterize population structure based on 9214 sires representing nine Swiss dairy cattle populations: Brown Swiss (BS), Braunvieh (BV), Original Braunvieh (OB), Holstein (HO), Red Holstein (RH), Swiss Fleckvieh (SF), Simmental (SI), Eringer (ER) and Evolèner (EV). Genomic inbreeding (F ROH ) and signatures of selection were determined by calculating runs of homozygosity (ROH). The results build the basis for a better understanding of the genetic development of Swiss dairy cattle populations and highlight differences between the original populations (i.e. OB, SI, ER and EV) and those that have become more popular in Switzerland as currently reflected by their larger populations (i.e. BS, BV, HO, RH and SF). The levels of genetic diversity were highest and lowest in the SF and BS breeds, respectively. Based on F ST values, we conclude that, among all pairwise comparisons, BS and HO (0.156) differ more than the other pairs of populations. The original Swiss cattle populations OB, SI, ER, and EV are clearly genetically separated from the Swiss cattle populations that are now more common and represented by larger numbers of cows. Mean levels of F ROH ranged from 0.027 (ER) to 0.091 (BS). Three of the original Swiss cattle populations, ER (F ROH : 0.027), OB (F ROH : 0.029), and SI (F ROH : 0.039), showed low levels of genomic inbreeding, whereas it was much higher in EV (F ROH : 0.074). Private signatures of selection for the original Swiss cattle populations are reported for BTA4, 5, 11 and 26. The low levels of genomic inbreeding observed in the original Swiss cattle populations ER, OB and SI compared to the other breeds are explained by a lesser use of artificial insemination and greater use of natural service. Natural service

Assessing Anthropogenic Impacts on Tunas, Sharks and Billfishes with Direct Observations of Human Fishers on the High Seas

Science.gov (United States)

Block, B.; Ferretti, F.; White, T.; De Leo, G.; Hazen, E. L.; Bograd, S. J.

2016-12-01

Anthropogenic impacts on marine predators have been examined within exclusive economic zones, but few data sets have enabled assessing human fishing impacts on the high seas. By combining large electronic tagging databases archiving mobile predator movements (e.g. Tagging of Pacific Pelagics, TAG A Giant, Animal Telemetry Network) with the global fishing catch and fishing effort data, from satellite tracks of vessels on the high seas (AIS), a better understanding of human use and exploitation at a global scale can be obtained. This capacity to combine the movements of mobile ocean predators (tunas, sharks, billfishes) with analyses of their human predator's behaviors, via examination of the global fishing fleet activities is unprecedented due to the new access researchers are garnering to these big satellite derived AIS databases. Global Fishing Watch is one example of such a data provider, that now makes accessible, the AIS data from the global community of maritime vessels, and has developed along with researchers new algorithms that delineate distinct types of fishing vessel behaviors (longline, purse seiner) and effort. When combined with satellite tagging data of mobile apex predators, oceanographic preferences, records of fishing fleets catches, targeted species and economic drivers of fisheries, new quantitative insights can be gained about the catch reporting of fleets, and the pelagic species targeted at a global scale. Research communities can now also examine how humans behave on the high seas, and potentially improve how fish stocks, such as tunas, billfishes, and sharks are exploited. The capacity to gather information on diverse human fishing fleets and behaviors remotely, should provide a wealth of new tools that can potentially be applied toward the resource management efforts surrounding these global fishing fleets. This type of information is essential for prioritizing regions of conservation concern for megaufauna swimming in our oceans.

Genetic structure of Plasmodium falciparum populations across the Honduras-Nicaragua border.

Science.gov (United States)

Larrañaga, Nerea; Mejía, Rosa E; Hormaza, José I; Montoya, Alberto; Soto, Aida; Fontecha, Gustavo A

2013-10-04

The Caribbean coast of Central America remains an area of malaria transmission caused by Plasmodium falciparum despite the fact that morbidity has been reduced in recent years. Parasite populations in that region show interesting characteristics such as chloroquine susceptibility and low mortality rates. Genetic structure and diversity of P. falciparum populations in the Honduras-Nicaragua border were analysed in this study. Seven neutral microsatellite loci were analysed in 110 P. falciparum isolates from endemic areas of Honduras (n = 77) and Nicaragua (n = 33), mostly from the border region called the Moskitia. Several analyses concerning the genetic diversity, linkage disequilibrium, population structure, molecular variance, and haplotype clustering were conducted. There was a low level of genetic diversity in P. falciparum populations from Honduras and Nicaragua. Expected heterozigosity (H(e)) results were similarly low for both populations. A moderate differentiation was revealed by the F(ST) index between both populations, and two putative clusters were defined through a structure analysis. The main cluster grouped most of samples from Honduras and Nicaragua, while the second cluster was smaller and included all the samples from the Siuna community in Nicaragua. This result could partially explain the stronger linkage disequilibrium (LD) in the parasite population from that country. These findings are congruent with the decreasing rates of malaria endemicity in Central America.

Quantifying spatial genetic structuring in mesophotic populations of the precious coral Corallium rubrum.

Science.gov (United States)

Costantini, Federica; Carlesi, Lorenzo; Abbiati, Marco

2013-01-01

While shallow water red coral populations have been overharvested in the past, nowadays, commercial harvesting shifted its pressure on mesophotic organisms. An understanding of red coral population structure, particularly larval dispersal patterns and connectivity among harvested populations is paramount to the viability of the species. In order to determine patterns of genetic spatial structuring of deep water Corallium rubrum populations, for the first time, colonies found between 58-118 m depth within the Tyrrhenian Sea were collected and analyzed. Ten microsatellite loci and two regions of mitochondrial DNA (mtMSH and mtC) were used to quantify patterns of genetic diversity within populations and to define population structuring at spatial scales from tens of metres to hundreds of kilometres. Microsatellites showed heterozygote deficiencies in all populations. Significant levels of genetic differentiation were observed at all investigated spatial scales, suggesting that populations are likely to be isolated. This differentiation may by the results of biological interactions, occurring within a small spatial scale and/or abiotic factors acting at a larger scale. Mitochondrial markers revealed significant genetic structuring at spatial scales greater then 100 km showing the occurrence of a barrier to gene flow between northern and southern Tyrrhenian populations. These findings provide support for the establishment of marine protected areas in the deep sea and off-shore reefs, in order to effectively maintain genetic diversity of mesophotic red coral populations.

Genetic structure of West Greenland populations of lumpfish Cyclopterus lumpus

DEFF Research Database (Denmark)

Mayoral, Elsa Garcia; Olsen, M.; Hedeholm, R.

2016-01-01

In this study, 11 microsatellite markers were used to determine the structure of West Greenlandic lumpfish Cyclopterus lumpus populations across six spawning locations spanning >1500 km and compared with neighbouring populations in Canada and Iceland. To evaluate whether data allow for identifica...

Development and validation of a spectrophotometry method for the determination of histamine in fresh tuna (Thunnus tunna)

International Nuclear Information System (INIS)

Chacon-Silva, Fainier; Barquero-Quiros, Miriam

2002-01-01

Histamine in foods can promote allergic reactions in sensitive persons. A colorimetric microscale method for histamine determination was developed and validated. Cu 2+ histamine chelation occurs at 9,5 ph. Dichloromethane extraction of the complex as the salt with tetrabromo phenolphthalein ethyl ester, allows photometric quantitation at 515 nm. The validation of micro method was accomplished trough its performance parameters, detection limit, quantitation limit, sensitivity, linearity, precision, recuperation. This methodology was applied to twenty raw tuna samples, collected in San Jose metropolitan area. It was found that 45% of analyzed samples had a histamine content in the range between 100-200 mg/kg. This finding indicates bacterial contamination, 15% of samples analyzed were over 500 mg/kg FDA level of sanitary risk. (Author) [es

Chronic irradiation as an ecological factor affecting genetic population structure

International Nuclear Information System (INIS)

Kal'chenko, V.A.; Kalabushkin, B.A.; Rubanovich, A.V.

1991-01-01

Genetic structure of two Centaurea scabiosa L. populations was studied by frequency distribution of leucine aminopeptidase (LAP) locus genotypes. The experimental population has been growing under conditions of chronic irradiation, with the dose per generation amounting to 1.2 to 25.5 Gy. In it, mutational variants are observed with a frequency of 5.4.10(-3)-4.5.10(-2) per generation (as compared to control population frequency at 5.4.10(-4)). Indexes for heterozygosity, mean number of genotypes, and effective number of alleles were higher in the experimental population. Segregation analysis revealed no differences in viability in the control population, and all genotypic combinations were found to be nearly neutral. In the experimental population, however, significant differences in relative viability of the genotypes were disclosed. The relative viability of heterozygotes for mutant allele C' was nearly maximum, while heterozygotes for other mutant alleles showed minimum viability. We reach the conclusion that the differences in genetic structure of the populations under investigation can be explained by the chronic irradiation factor that brought out differences in adaptability of both normal and mutant genotypes. The suggestion is that intra-locus interactions of the C' allele with normal alleles determine plant resistance to a wide range of unfavorable environmental conditions

Population structure and genetic diversity characterization of a sunflower association mapping population using SSR and SNP markers.

Science.gov (United States)

Filippi, Carla V; Aguirre, Natalia; Rivas, Juan G; Zubrzycki, Jeremias; Puebla, Andrea; Cordes, Diego; Moreno, Maria V; Fusari, Corina M; Alvarez, Daniel; Heinz, Ruth A; Hopp, Horacio E; Paniego, Norma B; Lia, Veronica V

2015-02-13

Argentina has a long tradition of sunflower breeding, and its germplasm is a valuable genetic resource worldwide. However, knowledge of the genetic constitution and variability levels of the Argentinean germplasm is still scarce, rendering the global map of cultivated sunflower diversity incomplete. In this study, 42 microsatellite loci and 384 single nucleotide polymorphisms (SNPs) were used to characterize the first association mapping population used for quantitative trait loci mapping in sunflower, along with a selection of allied open-pollinated and composite populations from the germplasm bank of the National Institute of Agricultural Technology of Argentina. The ability of different kinds of markers to assess genetic diversity and population structure was also evaluated. The analysis of polymorphism in the set of sunflower accessions studied here showed that both the microsatellites and SNP markers were informative for germplasm characterization, although to different extents. In general, the estimates of genetic variability were moderate. The average genetic diversity, as quantified by the expected heterozygosity, was 0.52 for SSR loci and 0.29 for SNPs. Within SSR markers, those derived from non-coding regions were able to capture higher levels of diversity than EST-SSR. A significant correlation was found between SSR and SNP- based genetic distances among accessions. Bayesian and multivariate methods were used to infer population structure. Evidence for the existence of three different genetic groups was found consistently across data sets (i.e., SSR, SNP and SSR + SNP), with the maintainer/restorer status being the most prevalent characteristic associated with group delimitation. The present study constitutes the first report comparing the performance of SSR and SNP markers for population genetics analysis in cultivated sunflower. We show that the SSR and SNP panels examined here, either used separately or in conjunction, allowed consistent

Population structure of humpback whales in the western and central South Pacific Ocean as determined by vocal exchange among populations

OpenAIRE

Garland, E.C.; Goldizen, A.W.; Lilley, M.S.; Rekdahl, M.L.; Garrigue, Claire; Constantine, R.; Hauser, N.D.; Poole, M.M.; Robbins, J.; Noad, M.J.

2015-01-01

For cetaceans, population structure is traditionally determined by molecular genetics or photographically identified individuals. Acoustic data, however, has provided information on movement and population structure with less effort and cost than traditional methods in an array of taxa. Male humpback whales (Megaptera novaeangliae) produce a continually evolving vocal sexual display, or song, that is similar among all males in a population. The rapid cultural transmission (the transfer of inf...

Blood Volume, Plasma Volume and Circulation Time in a High-Energy-Demand Teleost, the Yellowfin Tuna (Thunnus Albacares)

DEFF Research Database (Denmark)

Brill, R.W.; Cousins, K.L.; Jones, D.R.

1998-01-01

We measured red cell space with 51Cr-labeled red blood cells, and dextran space with 500 kDa fluorescein-isothiocyanate-labeled dextran (FITC-dextran), in two groups of yellowfin tuna (Thunnus albacares). Red cell space was 13.8+/-0.7 ml kg-1 (mean +/- s.e.m.) Assuming a whole- body hematocrit...... for albacore (Thunnus alalunga, 82-197 ml kg-1). Plasma volume within the primary circulatory system (calculated from the 51Cr-labeled red blood cell data) was 32.9+/-2.3 ml kg-1. Dextran space was 37.0+/-3.7 ml kg-1. Because 500 kDa FITC-dextran appeared to remain within the vascular space, these data imply...

The impact of natural transformation on adaptation in spatially structured bacterial populations.

Science.gov (United States)

Moradigaravand, Danesh; Engelstädter, Jan

2014-06-20

Recent studies have demonstrated that natural transformation and the formation of highly structured populations in bacteria are interconnected. In spite of growing evidence about this connection, little is known about the dynamics of natural transformation in spatially structured bacterial populations. In this work, we model the interdependency between the dynamics of the bacterial gene pool and those of environmental DNA in space to dissect the effect of transformation on adaptation. Our model reveals that even with only a single locus under consideration, transformation with a free DNA fragment pool results in complex adaptation dynamics that do not emerge in previous models focusing only on the gene shuffling effect of transformation at multiple loci. We demonstrate how spatial restriction on population growth and DNA diffusion in the environment affect the impact of transformation on adaptation. We found that in structured bacterial populations intermediate DNA diffusion rates predominantly cause transformation to impede adaptation by spreading deleterious alleles in the population. Overall, our model highlights distinctive evolutionary consequences of bacterial transformation in spatially restricted compared to planktonic bacterial populations.

Population Genetic Structure of the Dwarf Seahorse (Hippocampus zosterae) in Florida.

Science.gov (United States)

Fedrizzi, Nathan; Stiassny, Melanie L J; Boehm, J T; Dougherty, Eric R; Amato, George; Mendez, Martin

2015-01-01

The dwarf seahorse (Hippocampus zosterae) is widely distributed throughout near-shore habitats of the Gulf of Mexico and is of commercial significance in Florida, where it is harvested for the aquarium and curio trades. Despite its regional importance, the genetic structure of dwarf seahorse populations remains largely unknown. As an aid to ongoing conservation efforts, we employed three commonly applied mtDNA markers (ND4, DLoop and CO1) to investigate the genetic structuring of H. zosterae in Florida using samples collected throughout its range in the state. A total of 1450 bp provided sufficient resolution to delineate four populations of dwarf seahorses, as indicated by significant fixation indices. Despite an overall significant population structure, we observed evidence of interbreeding between individuals from geographically distant sites, supporting the hypothesis that rafting serves to maintain a degree of population connectivity. All individuals collected from Pensacola belong to a single distinct subpopulation, which is highly differentiated from the rest of Floridian dwarf seahorses sampled. Our findings highlight the utility of mtDNA markers in evaluating barriers to gene flow and identifying genetically distinct populations, which are vital to the development of comprehensive conservation strategies for exploited taxa.

Dynamique de structuration spatio-temporelle des populations de ...

African Journals Online (AJOL)

Dynamique de structuration spatio-temporelle des populations de familles de macroinvertébrés dans un continuum lac de barrage-effluent-fleuve issu de périmètre irrigué. Bassin de la Volta (Burkina Faso)

Structured populations with distributed recruitment : from PDE to delay formulation

NARCIS (Netherlands)

Calsina, Àngel; Diekmann, Odo; Farkas, József Z.

2016-01-01

In this work, first, we consider a physiologically structured population model with a distributed recruitment process. That is, our model allows newly recruited individuals to enter the population at all possible individual states, in principle. The model can be naturally formulated as a first-order

Inferring the Clonal Structure of Viral Populations from Time Series Sequencing.

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Donatien F Chedom

2015-11-01

Full Text Available RNA virus populations will undergo processes of mutation and selection resulting in a mixed population of viral particles. High throughput sequencing of a viral population subsequently contains a mixed signal of the underlying clones. We would like to identify the underlying evolutionary structures. We utilize two sources of information to attempt this; within segment linkage information, and mutation prevalence. We demonstrate that clone haplotypes, their prevalence, and maximum parsimony reticulate evolutionary structures can be identified, although the solutions may not be unique, even for complete sets of information. This is applied to a chain of influenza infection, where we infer evolutionary structures, including reassortment, and demonstrate some of the difficulties of interpretation that arise from deep sequencing due to artifacts such as template switching during PCR amplification.

Sus scrofa: Population Structure, Reproduction and Condition in Tropical North Eastern Australia

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NELSON, John E.

2009-01-01

Full Text Available Three feral pig populations inhabiting contrasting environments along the north easterncoast of Australia have been investigated with respect to population structure, individual condition andreproduction. The population on Prince of Wales Island contains a large proportion of juvenile andsub-adult pigs but lacks pigs in the higher age classes. Individuals also breed at an earlier age thananimals of the mainland populations. Pig populations on Cape York Peninsula show a largerproportion of older animals and feral pigs living in rainforest habitats show a low proportion ofanimals in very young and very old age classes. Pigs from the lowland rainforest population are inbetter condition than those of the other populations for most of the year, reflecting the availability offood all year round in this environment. Differences in the population structure of the threepopulations are discussed with respect to fecundity and several mortality factors such as predation anddiseases/parasites.

The Application of Contagious Disease Epidemiological Models to Known Population Structure and Movement

Science.gov (United States)

2016-03-01

concept model ( Ebola ) • Time-varying disease transmission rate () Influenza model • Population structure represented via finite scale-free network...I N S T I T U T E F O R D E F E N S E A N A L Y S E S The Application of Contagious Disease Epidemiological Models to Known Population Structure ...Known Population Structure and Movement Julia K. Burr Robert L. Cubeta Lucas A. LaViolet Carl A. Curling This page is intentionally blank. iii

Historia del Boxeo en la provincia de las Tunas hasta 1990

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Etián Jiménez Espinosa

2009-09-01

Full Text Available La presente investigación hace un estudio sobre los antecedentes, génesis, evolución y desarrollo del boxeo en la provincia en Las Tunas, el cual se realiza a partir de una periodización hasta nuestros días. El estudio responde a una de las problemáticas más complejas y necesarias del territorio, que responde a la carencia de información bibliográfica para impartir con la calidad pertinente la asignatura Historia del Deporte, en todos sus ámbitos – internacional, nacional y local- y con un enfoque de análisis totalizador. Se rescata la memoria histórica en su expresión deportiva como parte de la identidad cultural de la región. Las fuentes de la información fueron obtenidas de una acuciosa búsqueda en todos los medios de prensa local, antes y después del Triunfo de la Revolución, de una veintena de especialistas y conocedores del hecho histórico deportivo objeto de estudio. Además, se consultaron numerosas fuentes bibliográficas sobre la historia de este deporte en su manifestación a nivel nacional e internacional.

Population estimates of extended family structure and size.

Science.gov (United States)

Garceau, Anne; Wideroff, Louise; McNeel, Timothy; Dunn, Marsha; Graubard, Barry I

2008-01-01

Population-based estimates of biological family size can be useful for planning genetic studies, assessing how distributions of relatives affect disease associations with family history and estimating prevalence of potential family support. Mean family size per person is estimated from a population-based telephone survey (n = 1,019). After multivariate adjustment for demographic variables, older and non-White respondents reported greater mean numbers of total, first- and second-degree relatives. Females reported more total and first-degree relatives, while less educated respondents reported more second-degree relatives. Demographic differences in family size have implications for genetic research. Therefore, periodic collection of family structure data in representative populations would be useful. Copyright 2008 S. Karger AG, Basel.

Quantifying spatial genetic structuring in mesophotic populations of the precious coral Corallium rubrum.

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Federica Costantini

Full Text Available While shallow water red coral populations have been overharvested in the past, nowadays, commercial harvesting shifted its pressure on mesophotic organisms. An understanding of red coral population structure, particularly larval dispersal patterns and connectivity among harvested populations is paramount to the viability of the species. In order to determine patterns of genetic spatial structuring of deep water Corallium rubrum populations, for the first time, colonies found between 58-118 m depth within the Tyrrhenian Sea were collected and analyzed. Ten microsatellite loci and two regions of mitochondrial DNA (mtMSH and mtC were used to quantify patterns of genetic diversity within populations and to define population structuring at spatial scales from tens of metres to hundreds of kilometres. Microsatellites showed heterozygote deficiencies in all populations. Significant levels of genetic differentiation were observed at all investigated spatial scales, suggesting that populations are likely to be isolated. This differentiation may by the results of biological interactions, occurring within a small spatial scale and/or abiotic factors acting at a larger scale. Mitochondrial markers revealed significant genetic structuring at spatial scales greater then 100 km showing the occurrence of a barrier to gene flow between northern and southern Tyrrhenian populations. These findings provide support for the establishment of marine protected areas in the deep sea and off-shore reefs, in order to effectively maintain genetic diversity of mesophotic red coral populations.

Landscape structure mediates the effects of a stressor on field vole populations

DEFF Research Database (Denmark)

Dalkvist, Trine; Sibly, Richard M.; Topping, Christopher John

2013-01-01

Spatio-temporal landscape heterogeneity has rarely been considered in population-level impact assessments. Here we test whether landscape heterogeneity is important by examining the case of a pesticide applied seasonally to orchards which may affect non-target vole populations, using a validated ...... results show that accurate prediction of population impact cannot be achieved without taking account of landscape structure. The specifics of landscape structure and habitat connectivity are likely always important in mediating the effects of stressors....

Population genetic structure and demographic history of small ...

African Journals Online (AJOL)

Population genetic structure and demographic history of small yellow croaker, ... diversity (0.0112 ± 0.0061 to 0.0141 ± 0.0075) were detected in the species. ... into two closely related clades, but did not appear to have any geographic ...

Evolution of movement rate increases the effectiveness of marine reserves for the conservation of pelagic fishes.

Science.gov (United States)

Mee, Jonathan A; Otto, Sarah P; Pauly, Daniel

2017-06-01

Current debates about the efficacy of no-take marine reserves (MR) in protecting large pelagic fish such as tuna and sharks have usually not considered the evolutionary dimension of this issue, which emerges because the propensity to swim away from a given place, like any other biological trait, will probably vary in a heritable fashion among individuals. Here, based on spatially explicit simulations, we investigated whether selection to remain in MRs to avoid higher fishing mortality can lead to the evolution of more philopatric fish. Our simulations, which covered a range of life histories among tuna species (skipjack tuna vs. Atlantic bluefin tuna) and shark species (great white sharks vs. spiny dogfish), suggested that MRs were most effective at maintaining viable population sizes when movement distances were lowest. Decreased movement rate evolved following the establishment of marine reserves, and this evolution occurred more rapidly with higher fishing pressure. Evolutionary reductions in movement rate led to increases in within-reserve population sizes over the course of the 50 years following MR establishment, although this varied among life histories, with skipjack responding fastest and great white sharks slowest. Our results suggest the evolution of decreased movement can augment the efficacy of marine reserves, especially for species, such as skipjack tuna, with relatively short generation times. Even when movement rates did not evolve substantially over 50 years (e.g., given long generation times or little heritable variation), marine reserves were an effective tool for the conservation of fish populations when mean movement rates were low or MRs were large.

Population structure of Tor tor inferred from mitochondrial gene cytochrome b.

Science.gov (United States)

Pasi, Komal Shyamakant; Lakra, W S; Bhatt, J P; Goswami, M; Malakar, A Kr

2013-06-01

Tor tor, commonly called as Tor mahseer, is a high-valued food and game fish endemic to trans-Himalayan region. Mitochondrial cytochrome b (cyt b) gene region of 967 bp was used to estimate the population structure of T. tor. Three populations of T. tor were collected from Narmada (Hosangabad), Ken (Madla), and Parbati river (Sheopur) in Madhya Pradesh, India. The sequence analysis revealed that the nucleotide diversity (π) was low, ranging from 0.000 to 0.0150. Haplotype diversity (h) ranged from 0.000 to 1.000. The analysis of molecular variance analysis indicated significant genetic divergence among the three populations of T. tor. Neighboring-joining tree also showed that all individuals from three populations clustered into three distinct clades. The data generated by cyt b marker revealed interesting insight about population structure of T. tor, which would serve as baseline data for conservation and management of mahseer fishery.

Population structure and effective/census population size ratio in threatened three-spined stickleback populations from an isolated river basin in northwest Spain.

Science.gov (United States)

Pérez-Figueroa, A; Fernández, C; Amaro, R; Hermida, M; San Miguel, E

2015-08-01

Variability at 20 microsatellite loci was examined to assess the population genetic structure, gene flow, and effective population size (N(e)) in three populations of three-spined stickleback (Gasterosteus aculeatus) from the upper basin of the Miño River in Galicia, NW Spain, where this species is threatened. The three populations showed similar levels of genetic diversity. There is a significant genetic differentiation between the three populations, but also significant gene flow. N(e) estimates based on linkage disequilibrium yielded values of 355 for the Miño River population and 241 and 311 for the Rato and Guisande Rivers, respectively, although we expect that these are overestimates. N(e) estimates based on temporal methods, considering gene flow or not, for the tributaries yielded values of 30-56 and 47-56 for the Rato and Guisande Rivers, respectively. Estimated census size (N(c)) for the Rato River was 880 individuals. This yielded a N(e)/N(c) estimate of 3-6 % for temporal estimation of N(e), which is within the empirical range observed in freshwater fishes. We suggest that the three populations analyzed have a sufficient level of genetic diversity with some genetic structure. Additionally, the absence of physical barriers suggests that conservation efforts and monitoring should focus in the whole basin as a unit.

Population size, center-periphery, and seed dispersers' effects on the genetic diversity and population structure of the Mediterranean relict shrub Cneorum tricoccon.

Science.gov (United States)

Lázaro-Nogal, Ana; Matesanz, Silvia; García-Fernández, Alfredo; Traveset, Anna; Valladares, Fernando

2017-09-01

The effect of population size on population genetic diversity and structure has rarely been studied jointly with other factors such as the position of a population within the species' distribution range or the presence of mutualistic partners influencing dispersal. Understanding these determining factors for genetic variation is critical for conservation of relict plants that are generally suffering from genetic deterioration. Working with 16 populations of the vulnerable relict shrub Cneorum tricoccon throughout the majority of its western Mediterranean distribution range, and using nine polymorphic microsatellite markers, we examined the effects of periphery (peripheral vs. central), population size (large vs. small), and seed disperser (introduced carnivores vs. endemic lizards) on the genetic diversity and population structure of the species. Contrasting genetic variation ( H E : 0.04-0.476) was found across populations. Peripheral populations showed lower genetic diversity, but this was dependent on population size. Large peripheral populations showed high levels of genetic diversity, whereas small central populations were less diverse. Significant isolation by distance was detected, indicating that the effect of long-distance gene flow is limited relative to that of genetic drift, probably due to high selfing rates ( F IS  = 0.155-0.887), restricted pollen flow, and ineffective seed dispersal. Bayesian clustering also supported the strong population differentiation and highly fragmented structure. Contrary to expectations, the type of disperser showed no significant effect on either population genetic diversity or structure. Our results challenge the idea of an effect of periphery per se that can be mainly explained by population size, drawing attention to the need of integrative approaches considering different determinants of genetic variation. Furthermore, the very low genetic diversity observed in several small populations and the strong among-population

An age structured model for obesity prevalence dynamics in populations

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Gilberto González Parra

2010-08-01

Full Text Available Objective. Modeling the correlation of the development of obesity in a population with age and time and predict the dynamics of the correlation of the development of obesity in a population with age and time under different scenarios in Valencia (Spain. Materials and methods. An age structured mathematical model is used to describe the future dynamics of obesity prevalence for different ages in human population with excess weight. Simulation of the model with parameters estimated using the Health Survey of the Region of Valencia 2000 (4.319 interviews and Health Survey of the Region of Valencia 2005 (4.012 interviews. The model considers only overweight and obese populations since these subpopulations are the most relevant on obesity health concern. Results. The model allows predicting and studying the prevalence of obesity for each age. Results showed an increasing trend of obesity in the following years in well accordance with the trend observed in several countries. Conclusions. Based on the numerical simulations it is possible to conclude that the age structured mathematical model is suitable to forecast the obesity epidemic in each age group in different countries. Additionally, this type of models may be applied to study other characteristics of other populations such animal populations.

Characterization of Population Genetic Structure of red swamp crayfish, Procambarus clarkii, in China.

Science.gov (United States)

Yi, Shaokui; Li, Yanhe; Shi, Linlin; Zhang, Long; Li, Qingbin; Chen, Jing

2018-04-03

The red swamp crayfish (Procambarus clarkii) is one of the most economically important farmed aquatic species in China. However, it is also a famous invasive species in the world. This invasive species was dispersed most via human activities including intentional or unintentional carry in China. Thus, P. clarkii naturally distributed in China provides us a desirable mode to investigate the genetic structure of an invasive species dispersed mainly by human-mediated factors. To reveal the impact of human-mediated dispersal on genetic structure of P. clarkii in China, a total of 22,043 genome-wide SNPs were obtained from approximately 7.4 billion raw reads using 2b-RAD technique in this study. An evident pattern of population genetic structure and the asymmetrical migrational rates between different regions were observed with 22 populations based on these SNPs. This study provide a better understanding of the population genetic structure and demographic history of P. clarkii populations in China, inferring that anthropogenic factors (aquaculture or by accident) and ecological factors (e.g., complicated topography and climatic environment), as well as its special biological traits could account for the current population structure pattern and dispersal history of P. clarkii.

Vulnerability of teleosts caught by the pelagic tuna longline fleets in South Atlantic and Western Indian Oceans

Science.gov (United States)

Lucena-Frédou, Flávia; Kell, Laurie; Frédou, Thierry; Gaertner, Daniel; Potier, Michel; Bach, Pascal; Travassos, Paulo; Hazin, Fábio; Ménard, Frédéric

2017-06-01

Productivity and Susceptibility Analysis (PSA) is a methodology for evaluating the vulnerability of a stock based on its biological productivity and susceptibility to fishing. In this study, we evaluated the vulnerability of 60 stocks of tuna, billfishes and other teleosts caught by the tuna longline fleets operating in the South Atlantic and Indian Ocean using a semi-quantitative PSA. We (a) evaluated the vulnerability of the species in the study areas; (b) compared the vulnerability of target and non-target species and oceans; (c) analyzed the sensitivity of data entry; and (d) compared the results of the PSA to other fully quantitative assessment methods. Istiophoridae exhibited the highest scores for vulnerability. The top 10 species at risk were: Atlantic Istiophorus albicans; Indian Ocean Istiompax indica; Atlantic Makaira nigricans and Thunnus alalunga; Indian Ocean Xiphias gladius; Atlantic T. albacares, Gempylus serpens, Ranzania laevis and X. gladius; and Indian Ocean T. alalunga. All species considered at high risk were targeted or were commercialized bycatch, except for the Atlantic G. serpens and R. laevis which were discarded, and may be considered as a false positive. Those species and others at high risk should be prioritized for further assessment and/or data collection. Most species at moderate risk were bycatch species kept for sale. Conversely, species classified at low risk were mostly discarded. Overall, species at high risk were overfished and/or subjected to overfishing. Moreover, all species considered to be within extinction risk (Critically Endangered, Endangered and Vulnerable) were in the high-risk category. The good concordance between approaches corroborates the results of our analysis. PSA is not a replacement for traditional stock assessments, where a stock is assessed at regular intervals to provide management advice. It is of importance, however, where there is uncertainty about catches and life history parameters, since it can

Mitochondrial DNA structure of an isolated Tunisian Berber population and its relationship with Mediterranean populations.

Science.gov (United States)

Ben Halim, Nizar; Hsouna, Sana; Lasram, Khaled; Chargui, Mariem; Khemira, Laaroussi; Saidane, Rachid; Abdelhak, Sonia; Kefi, Rym

2018-02-01

Douiret is an isolated Berber population from South-Eastern Tunisia. The strong geographic and cultural isolation characterising this population might have contributed to remarkable endogamy and consanguinity, which were practiced for several centuries. The objective of this study is to evaluate the mitochondrial DNA (mtDNA) genetic structure of Douiret and to compare it to other Mediterranean populations with a special focus on major haplogroup T. Genomic DNA was extracted from blood samples of 58 unrelated individuals collected from the different patrilineal lineages of the population. The hypervariable region 1 of the mtDNA was amplified and sequenced. For comparative analyses, additional HVS1 sequences (n = 4857) were compiled from previous studies. The maternal background of the studied sample from Douiret was mainly of Eurasian origin (74%) followed by Sub-Saharan (17%) and North African (3%) lineages. Douiret harbours the highest frequency of haplogroup T in the Mediterranean region, assigned to the unique subclade T1a (38%). Phylogenetic analysis showed an outlier position of Douiret at the Mediterranean level. The genetic structure of Douiret highlights the presence of founders, most likely of Near/Middle Eastern origin, who conquered this area during the Middle/Late Upper Palaeolithic and Neolithic dispersals.

Producing genome structure populations with the dynamic and automated PGS software.

Science.gov (United States)

Hua, Nan; Tjong, Harianto; Shin, Hanjun; Gong, Ke; Zhou, Xianghong Jasmine; Alber, Frank

2018-05-01

Chromosome conformation capture technologies such as Hi-C are widely used to investigate the spatial organization of genomes. Because genome structures can vary considerably between individual cells of a population, interpreting ensemble-averaged Hi-C data can be challenging, in particular for long-range and interchromosomal interactions. We pioneered a probabilistic approach for the generation of a population of distinct diploid 3D genome structures consistent with all the chromatin-chromatin interaction probabilities from Hi-C experiments. Each structure in the population is a physical model of the genome in 3D. Analysis of these models yields new insights into the causes and the functional properties of the genome's organization in space and time. We provide a user-friendly software package, called PGS, which runs on local machines (for practice runs) and high-performance computing platforms. PGS takes a genome-wide Hi-C contact frequency matrix, along with information about genome segmentation, and produces an ensemble of 3D genome structures entirely consistent with the input. The software automatically generates an analysis report, and provides tools to extract and analyze the 3D coordinates of specific domains. Basic Linux command-line knowledge is sufficient for using this software. A typical running time of the pipeline is ∼3 d with 300 cores on a computer cluster to generate a population of 1,000 diploid genome structures at topological-associated domain (TAD)-level resolution.

Estimating spatio-temporal dynamics of size-structured populations

DEFF Research Database (Denmark)

Kristensen, Kasper; Thygesen, Uffe Høgsbro; Andersen, Ken Haste

2014-01-01

with simple stock dynamics, to estimate simultaneously how size distributions and spatial distributions develop in time. We demonstrate the method for a cod population sampled by trawl surveys. Particular attention is paid to correlation between size classes within each trawl haul due to clustering...... of individuals with similar size. The model estimates growth, mortality and reproduction, after which any aspect of size-structure, spatio-temporal population dynamics, as well as the sampling process can be probed. This is illustrated by two applications: 1) tracking the spatial movements of a single cohort...

Population Genetic Structure of the Tropical Two-Wing Flyingfish (Exocoetus volitans.

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Eric A Lewallen

Full Text Available Delineating populations of pantropical marine fish is a difficult process, due to widespread geographic ranges and complex life history traits in most species. Exocoetus volitans, a species of two-winged flyingfish, is a good model for understanding large-scale patterns of epipelagic fish population structure because it has a circumtropical geographic range and completes its entire life cycle in the epipelagic zone. Buoyant pelagic eggs should dictate high local dispersal capacity in this species, although a brief larval phase, small body size, and short lifespan may limit the dispersal of individuals over large spatial scales. Based on these biological features, we hypothesized that E. volitans would exhibit statistically and biologically significant population structure defined by recognized oceanographic barriers. We tested this hypothesis by analyzing cytochrome b mtDNA sequence data (1106 bps from specimens collected in the Pacific, Atlantic and Indian oceans (n = 266. AMOVA, Bayesian, and coalescent analytical approaches were used to assess and interpret population-level genetic variability. A parsimony-based haplotype network did not reveal population subdivision among ocean basins, but AMOVA revealed limited, statistically significant population structure between the Pacific and Atlantic Oceans (ΦST = 0.035, p<0.001. A spatially-unbiased Bayesian approach identified two circumtropical population clusters north and south of the Equator (ΦST = 0.026, p<0.001, a previously unknown dispersal barrier for an epipelagic fish. Bayesian demographic modeling suggested the effective population size of this species increased by at least an order of magnitude ~150,000 years ago, to more than 1 billion individuals currently. Thus, high levels of genetic similarity observed in E. volitans can be explained by high rates of gene flow, a dramatic and recent population expansion, as well as extensive and consistent dispersal throughout the geographic

Population Genetic Structure of the Tropical Two-Wing Flyingfish (Exocoetus volitans)

Science.gov (United States)

Lewallen, Eric A.; Bohonak, Andrew J.; Bonin, Carolina A.; van Wijnen, Andre J.; Pitman, Robert L.; Lovejoy, Nathan R.

2016-01-01

Delineating populations of pantropical marine fish is a difficult process, due to widespread geographic ranges and complex life history traits in most species. Exocoetus volitans, a species of two-winged flyingfish, is a good model for understanding large-scale patterns of epipelagic fish population structure because it has a circumtropical geographic range and completes its entire life cycle in the epipelagic zone. Buoyant pelagic eggs should dictate high local dispersal capacity in this species, although a brief larval phase, small body size, and short lifespan may limit the dispersal of individuals over large spatial scales. Based on these biological features, we hypothesized that E. volitans would exhibit statistically and biologically significant population structure defined by recognized oceanographic barriers. We tested this hypothesis by analyzing cytochrome b mtDNA sequence data (1106 bps) from specimens collected in the Pacific, Atlantic and Indian oceans (n = 266). AMOVA, Bayesian, and coalescent analytical approaches were used to assess and interpret population-level genetic variability. A parsimony-based haplotype network did not reveal population subdivision among ocean basins, but AMOVA revealed limited, statistically significant population structure between the Pacific and Atlantic Oceans (ΦST = 0.035, p<0.001). A spatially-unbiased Bayesian approach identified two circumtropical population clusters north and south of the Equator (ΦST = 0.026, p<0.001), a previously unknown dispersal barrier for an epipelagic fish. Bayesian demographic modeling suggested the effective population size of this species increased by at least an order of magnitude ~150,000 years ago, to more than 1 billion individuals currently. Thus, high levels of genetic similarity observed in E. volitans can be explained by high rates of gene flow, a dramatic and recent population expansion, as well as extensive and consistent dispersal throughout the geographic range of the

Modeling livestock population structure: a geospatial database for Ontario swine farms.

Science.gov (United States)

Khan, Salah Uddin; O'Sullivan, Terri L; Poljak, Zvonimir; Alsop, Janet; Greer, Amy L

2018-01-30

Infectious diseases in farmed animals have economic, social, and health consequences. Foreign animal diseases (FAD) of swine are of significant concern. Mathematical and simulation models are often used to simulate FAD outbreaks and best practices for control. However, simulation outcomes are sensitive to the population structure used. Within Canada, access to individual swine farm population data with which to parameterize models is a challenge because of privacy concerns. Our objective was to develop a methodology to model the farmed swine population in Ontario, Canada that could represent the existing population structure and improve the efficacy of simulation models. We developed a swine population model based on the factors such as facilities supporting farm infrastructure, land availability, zoning and local regulations, and natural geographic barriers that could affect swine farming in Ontario. Assigned farm locations were equal to the swine farm density described in the 2011 Canadian Census of Agriculture. Farms were then randomly assigned to farm types proportional to the existing swine herd types. We compared the swine population models with a known database of swine farm locations in Ontario and found that the modeled population was representative of farm locations with a high accuracy (AUC: 0.91, Standard deviation: 0.02) suggesting that our algorithm generated a reasonable approximation of farm locations in Ontario. In the absence of a readily accessible dataset providing details of the relative locations of swine farms in Ontario, development of a model livestock population that captures key characteristics of the true population structure while protecting privacy concerns is an important methodological advancement. This methodology will be useful for individuals interested in modeling the spread of pathogens between farms across a landscape and using these models to evaluate disease control strategies.

Consolidating birth-death and death-birth processes in structured populations.

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Joshua Zukewich

Full Text Available Network models extend evolutionary game theory to settings with spatial or social structure and have provided key insights on the mechanisms underlying the evolution of cooperation. However, network models have also proven sensitive to seemingly small details of the model architecture. Here we investigate two popular biologically motivated models of evolution in finite populations: Death-Birth (DB and Birth-Death (BD processes. In both cases reproduction is proportional to fitness and death is random; the only difference is the order of the two events at each time step. Although superficially similar, under DB cooperation may be favoured in structured populations, while under BD it never is. This is especially troubling as natural populations do not follow a strict one birth then one death regimen (or vice versa; such constraints are introduced to make models more tractable. Whether structure can promote the evolution of cooperation should not hinge on a simplifying assumption. Here, we propose a mixed rule where in each time step DB is used with probability δ and BD is used with probability 1-δ. We derive the conditions for selection favouring cooperation under the mixed rule for all social dilemmas. We find that the only qualitatively different outcome occurs when using just BD (δ = 0. This case admits a natural interpretation in terms of kin competition counterbalancing the effect of kin selection. Finally we show that, for any mixed BD-DB update and under weak selection, cooperation is never inhibited by population structure for any social dilemma, including the Snowdrift Game.

Population structure of Nellore cattle in northeastern Brazil

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Ana Carla Borges Barbosa

2013-09-01

Full Text Available The objective of this study was to evaluate the population genetic structure of Nellore cattle in northeastern Brazil. Pedigree information was collected from 175,231 animals born from 1967 to 2007. Probability of gene origin, inbreeding, average relatedness coefficient (AR, completeness pedigree, effective population size and generation interval were calculated. Generation interval was high due to the long period of time animals were used as reproducers. The bottleneck effect was evidenced as a result of intensive use of limited breeders over the last years. Low values were observed ​​in the effective number of founder animals (434 and ancestors (427 comparing with the number on the base (175,231 and reference populations (130,038. Generally, the variability explained by the founders and ancestors is considered low. The average coefficient of inbreeding (0.11% and AR (0.14% estimated for this population is considered low and can be partly explained by the increased population effective number in recent periods; however, it may be underestimated by shallow pedigree.

Genetic diversity and population structure in Polygonum cespitosum: insights to an ongoing plant invasion.

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Silvia Matesanz

Full Text Available Molecular markers can help elucidate how neutral evolutionary forces and introduction history contribute to genetic variation in invaders. We examined genetic diversity, population structure and colonization patterns in the invasive Polygonum cespitosum, a highly selfing, tetraploid Asian annual introduced to North America. We used nine diploidized polymorphic microsatellite markers to study 16 populations in the introduced range (northeastern North America, via the analyses of 516 individuals, and asked the following questions: 1 Do populations have differing levels of within-population genetic diversity? 2 Do populations form distinct genetic clusters? 3 Does population structure reflect either geographic distances or habitat similarities? We found low heterozygosity in all populations, consistent with the selfing mating system of P. cespitosum. Despite the high selfing levels, we found substantial genetic variation within and among P. cespitosum populations, based on the percentage of polymorphic loci, allelic richness, and expected heterozygosity. Inferences from individual assignment tests (Bayesian clustering and pairwise FST values indicated high among-population differentiation, which indicates that the effects of gene flow are limited relative to those of genetic drift, probably due to the high selfing rates and the limited seed dispersal ability of P. cespitosum. Population structure did not reflect a pattern of isolation by distance nor was it related to habitat similarities. Rather, population structure appears to be the result of the random movement of propagules across the introduced range, possibly associated with human dispersal. Furthermore, the high population differentiation, genetic diversity, and fine-scale genetic structure (populations founded by individuals from different genetic sources in the introduced range suggest that multiple introductions to this region may have occurred. High genetic diversity may further

Continental-scale assessment of genetic diversity and population structure in quaking aspen (Populus tremuloides)

Science.gov (United States)

Colin M. Callahan; Carol A. Rowe; Ronald J. Ryel; John D. Shaw; Michael D. Madritch; Karen E. Mock

2013-01-01

Aspen populations in the south-western portion of the range are consistent with expectations for a historically stable edge, with low within-population diversity, significant geographical population structuring, and little evidence of northward expansion. Structuring within the southwestern cluster may result from distinct gene pools separated during the Pleistocene...

Aniversario XXX de la creación del Centro Provincial de Información de Las Tunas

Directory of Open Access Journals (Sweden)

Edenny Reina Castillo Montes de Oca

2014-08-01

Full Text Available El 4 de enero de 1984 se inauguró el Centro Provincial de Información de Ciencias Médicas de Las Tunas, lo que permitió organizar la Red Provincial de Bibliotecas Médicas y con ello crear nuevos escenarios para desarrollar la actividad científico - informativa en el territorio; con la apertura de una biblioteca en cada unidad de salud. El Centro inicialmente estuvo ubicado en un pequeño local cercano a la biblioteca del Hospital “Dr. Ernesto Guevara de la Serna”. En el año 1988; con la misión, la visión y los objetivos de trabajo de su objeto social bien definidos, fue trasladado para la Facultad de Ciencias Médicas “Dr. Zoilo Marinello Vidaurreta”, de la provincia de Las Tunas y al crearse la Universidad de Ciencias Médicas en esta provincia, el Centro Provincial de Información pasa a ser una dependencia directa de la misma. En la primera década se sentaron las bases de lo que es hoy el Sistema Provincial de Información de Ciencias de la Salud, constituido por 25 bibliotecas médicas distribuidas en toda la geografía tunera, con la misión de: “garantizar la prestación de servicios de información científico tecnológica a la comunidad de profesionales que conforman el sector de la salud en la provincia, con el fin de elevar la calidad de la asistencia, la investigación, la docencia, la dirección y la cultura médica nueva y propiciar el hallazgo de soluciones que posibiliten enfrentar los problemas de salud”. Durante estos 30 años, los trabajadores de la información en el territorio han laborado con verdadera dedicación para cumplir cada tarea encomendada, asumir los retos del desarrollo continuo de la ciencia, asimilar las nuevas tecnologías y brindar a nuestros usuarios servicios y productos de alto valor informacional. La movilización de recursos lograda a través de los proyectos de la Red Nacional de Salud INFOMED, entre los cuales figuran: Proyecto SIDA, Proyecto para la Promoción de Publicaciones

Population structure of fishes from an urban stream

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Naiara Zanatta

2017-05-01

Full Text Available The aim of this study was to identify the population structure of the ichthyofauna in an urban stream within an environmental protection area in southern Brazil. Quarterly samplings were conducted between October 2009 and August 2010. Poecilia reticulata was the most abundant species, followed by Hypostomus ancistroides and Rhamdia quelen. It was found a higher proportion of adults instead of juveniles from P. reticulata and R. quelen populations, while the opposite was recorded for H. ancistroides. Sex ratio of 1:1 was found for H. ancistroides, but differed significantly for P. reticulata and R. quelen. Females of P. reticulata and R. quelen reached higher length than males in the smaller and higher length-classes, while H. ancistroides females were only longer in initial length-classes. It was recorded higher occurrence of mature and maturing individuals. Mature individuals of H. ancistroides were sampled in October, and P. reticulata and R. quelen throughout the sampling period. Despite adverse environmental conditions, the occurrence of juveniles indicates reproductive activity for these species. Population structure studies in degraded systems are urgent, since life-history features of species may suffer changes due to anthropic impacts. Providing such information contributes to decision making and management of degraded systems.

Argentine Population Genetic Structure: Large Variance in Amerindian Contribution

Science.gov (United States)

Seldin, Michael F.; Tian, Chao; Shigeta, Russell; Scherbarth, Hugo R.; Silva, Gabriel; Belmont, John W.; Kittles, Rick; Gamron, Susana; Allevi, Alberto; Palatnik, Simon A.; Alvarellos, Alejandro; Paira, Sergio; Caprarulo, Cesar; Guillerón, Carolina; Catoggio, Luis J.; Prigione, Cristina; Berbotto, Guillermo A.; García, Mercedes A.; Perandones, Carlos E.; Pons-Estel, Bernardo A.; Alarcon-Riquelme, Marta E.

2011-01-01

Argentine population genetic structure was examined using a set of 78 ancestry informative markers (AIMs) to assess the contributions of European, Amerindian, and African ancestry in 94 individuals members of this population. Using the Bayesian clustering algorithm STRUCTURE, the mean European contribution was 78%, the Amerindian contribution was 19.4%, and the African contribution was 2.5%. Similar results were found using weighted least mean square method: European, 80.2%; Amerindian, 18.1%; and African, 1.7%. Consistent with previous studies the current results showed very few individuals (four of 94) with greater than 10% African admixture. Notably, when individual admixture was examined, the Amerindian and European admixture showed a very large variance and individual Amerindian contribution ranged from 1.5 to 84.5% in the 94 individual Argentine subjects. These results indicate that admixture must be considered when clinical epidemiology or case control genetic analyses are studied in this population. Moreover, the current study provides a set of informative SNPs that can be used to ascertain or control for this potentially hidden stratification. In addition, the large variance in admixture proportions in individual Argentine subjects shown by this study suggests that this population is appropriate for future admixture mapping studies. PMID:17177183

Population structure of giraffes is affected by management in the Great Rift Valley, Kenya.

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Zoe Muller

Full Text Available Giraffe populations in East Africa have declined in the past thirty years yet there has been limited research on this species. This study had four objectives: i to provide a baseline population assessment for the two largest populations of Rothschild's giraffes in Kenya, ii to assess whether there are differences in population structure between the two enclosed populations, iii to assess the potential and possible implications of different management practices on enclosed giraffe populations to inform future decision-making, and iv to add to the availability of information available about giraffes in the wild. I used individual identification to assess the size and structure of the two populations; in Soysambu Conservancy between May 2010 and January 2011, I identified 77 giraffes; in Lake Nakuru National Park between May 2011 and January 2012, I identified 89. Population structure differed significantly between the two sites; Soysambu Conservancy contained a high percentage of juveniles (34% and subadults (29% compared to Lake Nakuru NP, which contained fewer juveniles (5% and subadults (15%. During the time of this study Soysambu Conservancy contained no lions while Lake Nakuru NP contained a high density of lions (30 lions per 100km2. Lions are the main predator of giraffes, and preferential predation on juvenile giraffes has previously been identified in Lake Nakuru NP. My results suggest that high lion density in Lake Nakuru NP may have influenced the structure of the giraffe population by removing juveniles and, consequently, may affect future population growth. I suggest that wildlife managers consider lion densities alongside breeding plans for Endangered species, since the presence of lions appears to influence the population structure of giraffes in enclosed habitats.

Population structure of giraffes is affected by management in the Great Rift Valley, Kenya.

Science.gov (United States)

Muller, Zoe

2018-01-01

Giraffe populations in East Africa have declined in the past thirty years yet there has been limited research on this species. This study had four objectives: i) to provide a baseline population assessment for the two largest populations of Rothschild's giraffes in Kenya, ii) to assess whether there are differences in population structure between the two enclosed populations, iii) to assess the potential and possible implications of different management practices on enclosed giraffe populations to inform future decision-making, and iv) to add to the availability of information available about giraffes in the wild. I used individual identification to assess the size and structure of the two populations; in Soysambu Conservancy between May 2010 and January 2011, I identified 77 giraffes; in Lake Nakuru National Park between May 2011 and January 2012, I identified 89. Population structure differed significantly between the two sites; Soysambu Conservancy contained a high percentage of juveniles (34%) and subadults (29%) compared to Lake Nakuru NP, which contained fewer juveniles (5%) and subadults (15%). During the time of this study Soysambu Conservancy contained no lions while Lake Nakuru NP contained a high density of lions (30 lions per 100km2). Lions are the main predator of giraffes, and preferential predation on juvenile giraffes has previously been identified in Lake Nakuru NP. My results suggest that high lion density in Lake Nakuru NP may have influenced the structure of the giraffe population by removing juveniles and, consequently, may affect future population growth. I suggest that wildlife managers consider lion densities alongside breeding plans for Endangered species, since the presence of lions appears to influence the population structure of giraffes in enclosed habitats.

Population structure, fluctuating asymmetry and genetic variability in an endemic and highly isolated Astyanax fish population (Characidae

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Maria Claudia Gross

2004-01-01

Full Text Available Morphological and chromosomal markers were used to infer the structure and genetic variability of a population of fish of the genus Astyanax, geographically isolated at sinkhole 2 of Vila Velha State Park, Paraná, Brazil. Two morphotypes types were observed, the standard phenotype I and phenotype II which showed an anatomical alteration probably due to an inbreeding process. Fluctuating asymmetry (FA analysis of different characters showed low levels of morphological variation among the population from sinkhole 2 and in another population from the Tibagi river (Paraná, Brazil. The Astyanax karyotype was characterized in terms of chromosomal morphology, constitutive heterochromatin and nucleolar organizer regions. Males and females presented similar karyotypes (2n=48, 6M+18SM+14ST+10A with no evidence of a sex chromosome system. One female from sinkhole 2 was a natural triploid with 2n=3x=72 chromosomes (9M+27SM+21ST+15A. The data are discussed regarding the maintenance of population structure and their evolutionary importance, our data suggesting that Astyanax from the Vila Velha State Park sinkhole 2 is a recently isolated population.

Population Structure and Gene Flow of the Yellow Anaconda (Eunectes notaeus) in Northern Argentina

Science.gov (United States)

McCartney-Melstad, Evan; Waller, Tomás; Micucci, Patricio A.; Barros, Mariano; Draque, Juan; Amato, George; Mendez, Martin

2012-01-01

Yellow anacondas (Eunectes notaeus) are large, semiaquatic boid snakes found in wetland systems in South America. These snakes are commercially harvested under a sustainable management plan in Argentina, so information regarding population structuring can be helpful for determination of management units. We evaluated genetic structure and migration using partial sequences from the mitochondrial control region and mitochondrial genes cyt-b and ND4 for 183 samples collected within northern Argentina. A group of landscape features and environmental variables including several treatments of temperature and precipitation were explored as potential drivers of observed genetic patterns. We found significant population structure between most putative population comparisons and bidirectional but asymmetric migration in several cases. The configuration of rivers and wetlands was found to be significantly associated with yellow anaconda population structure (IBD), and important for gene flow, although genetic distances were not significantly correlated with the environmental variables used here. More in-depth analyses of environmental data may be needed to fully understand the importance of environmental conditions on population structure and migration. These analyses indicate that our putative populations are demographically distinct and should be treated as such in Argentina's management plan for the harvesting of yellow anacondas. PMID:22675425

Nesting habits influence population genetic structure of a bee living in anthropogenic disturbance.

Science.gov (United States)

Vickruck, J L; Richards, M H

2017-05-01

While most organisms are negatively affected by anthropogenic disturbance, a few species thrive in landscapes altered by humans. Typically, native bees are negatively impacted by anthropogenic environmental change, including habitat alteration and climate change. Here, we investigate the population structure of the eastern carpenter bee Xylocopa virginica, a generalist pollinator with a broad geographic range spanning eastern North America. Eastern carpenter bees now nest almost exclusively in artificial wooden structures, linking their geographic distribution and population structure to human activities and disturbance. To investigate the population structure of these bees, we sampled females from 16 different populations from across their range. Nine species-specific microsatellite loci showed that almost all populations are genetically distinct, but with high levels of genetic diversity and low levels of inbreeding overall. Broadly speaking, populations clustered into three distinct genetic groups: a northern group, a western group and a core group. The northern group had low effective population sizes, decreased genetic variability and the highest levels of inbreeding in the data set, suggesting that carpenter bees may be expanding their range northward. The western group was genetically distinct, but lacked signals of a recent range expansion. Climatic data showed that summer and winter temperatures explained a significant amount of the genetic differentiation seen among populations, while precipitation did not. Our results indicate that X. virginica may be one of the rare 'anthrophilic' species that thrive in the face of anthropogenic disturbance. © 2017 John Wiley & Sons Ltd.

Lack of Population Structure in Coriander Populations Based on SDS (Seed Storage Protein Page Analysis

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Gülsüm Yaldiz

2016-08-01

Full Text Available Genetic variation is prerequisite for plant breeding. Nothing information existed in the literature for available diversity of Coriander accession in Turkey. Plant breeding activities are negligible in Turkey. So in order to start effective plant breeding program in Turkey, information on the available genetic diversity is viable. Therefore we planned to study the genetic variation and population structure of 29 Coriander accessions by seed storage protein (SDS. SDS analysis elaborated the lack of population structure and genetic bottleneck in the Coriander accessions in Turkey. Based on the results of this study, it was clear that sampling strategy was not appropriate and plant introduction should be made from different sources and diverse genotypes should be used as parents to initialize the effective Turkish Coriander breeding program.

Insular Celtic population structure and genomic footprints of migration.

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Ross P Byrne

2018-01-01

Full Text Available Previous studies of the genetic landscape of Ireland have suggested homogeneity, with population substructure undetectable using single-marker methods. Here we have harnessed the haplotype-based method fineSTRUCTURE in an Irish genome-wide SNP dataset, identifying 23 discrete genetic clusters which segregate with geographical provenance. Cluster diversity is pronounced in the west of Ireland but reduced in the east where older structure has been eroded by historical migrations. Accordingly, when populations from the neighbouring island of Britain are included, a west-east cline of Celtic-British ancestry is revealed along with a particularly striking correlation between haplotypes and geography across both islands. A strong relationship is revealed between subsets of Northern Irish and Scottish populations, where discordant genetic and geographic affinities reflect major migrations in recent centuries. Additionally, Irish genetic proximity of all Scottish samples likely reflects older strata of communication across the narrowest inter-island crossing. Using GLOBETROTTER we detected Irish admixture signals from Britain and Europe and estimated dates for events consistent with the historical migrations of the Norse-Vikings, the Anglo-Normans and the British Plantations. The influence of the former is greater than previously estimated from Y chromosome haplotypes. In all, we paint a new picture of the genetic landscape of Ireland, revealing structure which should be considered in the design of studies examining rare genetic variation and its association with traits.

Estimation of the nopal cactus (Opuntia cochenillifera for color removal in drinking water Evaluación de la tuna (Opuntia cochenillifera para la remoción del color en agua potable

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Joaquín Jiménez Antillón

2012-12-01

Full Text Available The efficiency of nopal cactus to remove color in river and artificial waters for human consumption was evaluated. The performance of nopal was compared with that of aluminum sulfate coagulant and a cationic flocculant.The river water was cha- racterized by high color, low turbidity, alkalinity and hardness, and a high percentage of dissolved oxygen. The cactus leaves showed no activity as unique coa- gulant to be evaluated only in river water. In artificial water, as a sole treatment (45 mg/l, an efficiency of 94% in color removal was observed, slightly higher than that of the conventional treatment (20 mg/l Al2 (SO43 and 2 mg/l of cationic flocculant with a removal of 89%. However, water treated with nopal left a residual COD value doubled (21 mg/l compared to con- ventional treatment. In the treatment of artificial water, nopal as a flocculant showed a color removal of 92% and a residual COD of 31.5 mg /l applied at a dose of 22.5 mg/l and 7 mg/l of Al2 (SO43. The nopal was not very effective to remove the color produced by humic substances in waters of low turbidity and alkalinity, but its applicability as a coagulant/flocculant in waters of high turbidity and alkalinity is promising. It is recommended to extract the active ingredients of natural products to reduce the organic load of treated water and prevent the formation of disin- fection byproducts.El estudio evaluó la eficiencia del cactus de la tuna para remover el color en agua de río y agua artificial para el consumo humano. Se comparó su desem- peño con el coagulante sulfato de aluminio y un floculante catiónico. El agua fluvial se caracterizó por presentar alto color, baja turbidez, alcalinidad y dureza y alto porcentaje de oxígeno disuelto. Las hojas de tuna no mostraron actividad como coagulante único al ser evaluadas en agua de río. Se observó una eficiencia de remoción de color del 94% en agua artificial, cuando se aplicó como tratamiento único (45 mg/l, poco

Distance, dams and drift: What structures populations of an endangered, benthic stream fish?

Science.gov (United States)

Roberts, James H.; Angermeier, Paul; Hallerman, Eric M.

2013-01-01

Spatial population structure plays an important role in species persistence, evolution and conservation. Benthic stream fishes are diverse and frequently imperilled, yet the determinants and spatial scaling of their population structure are understudied. We investigated the range-wide population genetic structure of Roanoke logperch (Percina rex), an endangered, benthic stream fish of the eastern United States. Fish were sampled from 35 sites and analysed at 11 microsatellite DNA loci. Clustering models were used to sort individuals into genetically cohesive groups and thereby estimate the spatial scaling of population structure. We then used Bayesian generalized linear mixed models (BGLMMs) to test alternative hypotheses about the environmental factors most responsible for generating structure, as measured by the differentiation statistic FST. Clustering models delineated seven discrete populations, whose boundaries coincided with agents of fragmentation, including hydroelectric dams and tailwaters. In the absence of hydrological barriers, gene flow was extensive throughout catchments, whereas there was no evidence for contemporary dispersal between catchments across barriers. In the best-supported BGLMM, FST was positively related to the spatial distance and degree of hydrological alteration between sites and negatively related to genetic diversity within sites. Whereas the effect of tailwaters was equivocal, dams strongly influenced differentiation: the effect of a dam on FST was comparable to that of a between-site distance of over 1200 km of unimpounded river. Overall, the effect of distance-mediated dispersal was negligible compared to the combined effects of fragmentation and genetic drift. The contemporary population structure of P. rex comprises a few geographically extensive ‘islands’ that are fragmented by hydroelectric projects. This information clarifies the importance of a catchment-scale perspective on conserving the species and

Detailed genetic structure of European bitterling populations in Central Europe

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Veronika Bartáková

2015-11-01

Full Text Available The European bitterling (Rhodeus amarus is a small cyprinid fish whose populations declined markedly between 1950 and 1980. However, its range currently expands, partly due to human-assisted introductions. We determined the genetic variability and detailed spatial structure among bitterling populations in Central Europe and tested alternative hypotheses about colonization of this area. Twelve polymorphic microsatellite loci on a large sample of 688 individuals had been used to analyse genetic variability and population structure. Samples originated from 27 localities with emphasis on area of the Czech Republic where three major sea drainages (Black, Baltic, and Northern Sea meet. Highly variable level of intrapopulation genetic variability had generally been detected and a recent decrease in numbers (“bottleneck” had been indicated by genetic data among six populations. High level of interpopulation differentiation was identified even within the basins. There was a significant role of genetic drift and indications of low dispersal ability of R. amarus. Surprisingly, the Odra River was inhabited by two distinct populations without any genetic signatures of a secondary contact. Czech part of the Odra (Baltic basin was colonized from the Danubian refugium (similarly to adjacent Danubian basin rivers including the Morava, while Polish part of the Odra was genetically similar to the populations in the Vistula River (Baltic basin, that has been colonized by a different (Eastern phylogeographic lineage of R. amarus. Most Czech R. amarus populations were colonized from the Danubian refugium, suggesting potential for a human-mediated colonization of the Odra or Elbe Rivers by R. amarus. One Elbe basin population was genetically mixed from the two (Danubian and Eastern phylogeographic lineages. In general the Czech populations of R. amarus were genetically stable except for a single population which has probably been recently introduced. This research

Analysis of genetic diversity and population structure in upland ...

Indian Academy of Sciences (India)

Mulugeta Seyoum

2018-06-09

Jun 9, 2018 ... diversity and population structure at DNA level, 302 elite upland cotton germplasm accessions ...... conservation of cotton germplasm in China (English abstract). ... and Alishah O. 2011 Inter simple sequence repeats (ISSR).

Review: Genetic diversity and population structure of cotton ...

African Journals Online (AJOL)

Cotton (Gossypium spp.) is the world's leading natural fiber crop and is cultivated in diverse temperate and tropical areas. In this sense, molecular markers are important tools for polymorphism identification in genetic diversity analyses. The objective of this study was to evaluate genetic diversity and population structure in ...

Genetic diversity, population structure and marker trait associations ...

Indian Academy of Sciences (India)

Supplementary data: Genetic diversity, population structure and marker trait associations for seed quality traits in cotton (Gossypium hirsutum). Ashok Badigannavar and Gerald O. Myers. J. Genet. 94, 87–94. Table 1. List of cotton germplasm lines used in this study. Germplasm no. Cultivar. Region. Germplasm no. Cultivar.

Population genetic structure of coral reef species Plectorhinchus ...

African Journals Online (AJOL)

The population genetic structure and the dispersal ability of Plectorhinchus flavomaculatus from South China Sea were examined with a 464 bp segment of mtDNA control region. A total of 116 individuals were collected from 12 coral reefs in Xisha, Zhongsha and Nansha archipelagos and 22 haplotypes were obtained.

Earliest evidence for the structure of Homo sapiens populations in Africa

Science.gov (United States)

Scerri, Eleanor M. L.; Drake, Nick A.; Jennings, Richard; Groucutt, Huw S.

2014-10-01

Understanding the structure and variation of Homo sapiens populations in Africa is critical for interpreting multiproxy evidence of their subsequent dispersals into Eurasia. However, there is no consensus on early H. sapiens demographic structure, or its effects on intra-African dispersals. Here, we show how a patchwork of ecological corridors and bottlenecks triggered a successive budding of populations across the Sahara. Using a temporally and spatially explicit palaeoenvironmental model, we found that the Sahara was not uniformly ameliorated between ∼130 and 75 thousand years ago (ka), as has been stated. Model integration with multivariate analyses of corresponding stone tools then revealed several spatially defined technological clusters which correlated with distinct palaeobiomes. Similarities between technological clusters were such that they decreased with distance except where connected by palaeohydrological networks. These results indicate that populations at the Eurasian gateway were strongly structured, which has implications for refining the demographic parameters of dispersals out of Africa.

Evaluación de los componentes de la biodiversidad en la finca agroecológica "Las Palmitas" del municipio Las Tunas Evaluation of the biodiversity components in the agroecological farm "Las Palmitas", Las Tunas municipality

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Yamilka Salmón

2012-09-01

Full Text Available El objetivo del trabajo fue evaluar los componentes de la biodiversidad funcional y su contribución a la productividad y la eficiencia de la producción en la finca "Las Palmitas" (en la provincia Las Tunas, Cuba. Esta tiene un área de 15,44 ha y se dedica a la producción diversificada de cultivos, frutales y animales. Se realizó una caracterización agroecológica y se evaluó la funcionalidad de la biodiversidad, a partir del diseño de un modelo de análisis como guía de la investigación que incluyó los componentes: diversidad de árboles, diversidad de la producción y riqueza de especies. A través del diagnóstico se cuantificó el número de individuos de cada especie agrícola y pecuaria, y se caracterizaron de acuerdo con su funcionalidad dentro del sistema agroproductivo. Las fuentes de información primaria fueron la observación directa, las entrevistas informales y la aplicación de una encuesta semiestructurada, que incluyó las variables de interés para el diagnóstico. Se calcularon los índices de Shannon (2,8 y Margalef (5,70, los que permitieron visualizar la contribución de la diversidad al incremento de la productividad. Los indicadores de diversidad del agroecosistema alcanzaron valores óptimos para los sistemas diversificados, los cuales contribuyeron a la autosufiencia alimentaria, la eficiencia y la productividad. Los resultados indican una relevancia económica y social, que le confiere sostenibilidad y resiliencia al sistema agroecológico evaluado, por lo que constituye un modelo para su diseminación en condiciones locales o similares a las de este estudio.The objective of the work was to evaluate the components of functional biodiversity and their contribution to the productivity and efficiency of production in the farm "Las Palmitas" (Las Tunas province, Cuba. It has an area of 15,44 ha and it is dedicated to diversified crop, fruit and animal production. An agroecological characterization was made and