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Sample records for stream diatom assemblages

  1. The reponse of epilithic diatom assemblages to sewage pollution in mountain streams of the Czech Republic

    Czech Academy of Sciences Publication Activity Database

    Moravcová, A.; Rauch, Ota; Lukavský, Jaromír; Nedbalová, Linda

    2013-01-01

    Roč. 146, č. 2 (2013), s. 153-166 ISSN 2032-3913 Institutional support: RVO:67985939 Keywords : epilitic diatoms * mountain streams * sewage polllution Subject RIV: EH - Ecology, Behaviour Impact factor: 0.960, year: 2013

  2. Diatom Communities and Metrics as Indicators of Urbanization Effects on Streams and Potential Moderation by Landscape Green Infrastructure

    Science.gov (United States)

    Diatoms are very useful and important indicators of anthropogenic impacts on streams because they are the foundation of primary production and are responsive to nutrients, conductivity, and habitat conditions. We characterized relationships of diatom assemblages with water chemis...

  3. The health of benthic diatom assemblages in lower stretch

    Indian Academy of Sciences (India)

    This study examines the ecological state of epilithic diatom assemblages along the lower stretch of Mandakini, a glacier-fed Himalayan river. The diatoms were sampled at four stations during winter and summer, only once in each season. Valve counts were obtained from Naphrax mounts prepared from each sample.

  4. THE INFLUENCE OF SUBMERGED MACROPHYTES ON SEDIMENTARY DIATOM ASSEMBLAGES(1).

    Science.gov (United States)

    Vermaire, Jesse C; Prairie, Yves T; Gregory-Eaves, Irene

    2011-12-01

    Submerged macrophytes are a central component of lake ecosystems; however, little is known regarding their long-term response to environmental change. We have examined the potential of diatoms as indicators of past macrophyte biomass. We first sampled periphyton to determine whether habitat was a predictor of diatom assemblage. We then sampled 41 lakes in Quebec, Canada, to evaluate whether whole-lake submerged macrophyte biomass (BiomEpiV) influenced surface sediment diatom assemblages. A multivariate regression tree (MRT) was used to construct a semiquantitative model to reconstruct past macrophyte biomass. We determined that periphytic diatom assemblages on macrophytes were significantly different from those on wood and rocks (ANOSIM R = 0.63, P macrophyte, nutrient-limited lakes (BiomEpiV ≥525 μg · L(-1) ; total phosphorus [TP] macrophyte, nutrient-limited lakes (BiomEpiV macrophytes have a significant influence on diatom community structure and that sedimentary diatom assemblages can be used to infer past macrophyte abundance. © 2011 Phycological Society of America.

  5. Diatom assemblage in a tropical lake of northeastern Brazil

    Directory of Open Access Journals (Sweden)

    Lilian Rodrigues do Nascimento

    2010-02-01

    Full Text Available The composition and spatial variation of diatom assemblage in surface sediments of Caçó Lake (shallow, mesotrophic and weakly acid lake - Maranhão State, Brazil were analyzed in order to know the distribution pattern of the species along the lake during rainy season (April 1999. Four zones were established in the lake based on 21 diatoms species and habitat affinities. The first three zones (prime three meters deep to six meters deep were marked by the occurrence of Pinnularia gigas, Frustulia rhomboides, Encyonopsis krasskei, Eunotia camelus, E. femoriformis and E. monodon. Zone IV (seven to nine meters deep was inhabited mainly by Surirella biseriata and Fragilariforma floridana. During the beginning of the rainy season, the diatom assemblage in Caçó Lake was composed mainly by benthic and epiphytic forms that reflected the low lake levels and the abundance of littoral vegetation present in this lake.Com o objetivo de se conhecer a dinâmica espacial e a distribuição das diatomáceas contidas no sedimento superficial do lago Caçó, durante o período de chuvas (abril de 1999 foram realizadas coletas em um "transect" horizontal. A partir da observação destas coletas efetuadas a cada 1 metro pode-se observar que a distribuição das diatomáceas esteve fortemente ligada a ocorrência do banco de macrófitas da sua margem, com a ocorrência maciça das espécies epifíticas e bentônicas. A análise de agrupamento de dados permitiu uma melhor visualização, da sua distribuição a cada profundidade e também das associações específicas em cada zona. Os resultados deste estudo permitiram concluir que a ocorrência e distribuição das diatomáceas do Lago Caçó está fortemente ligada ao banco de macrófitas localizado em suas margens, definindo assim zonas características dentro do lago.

  6. Tidal Channel Diatom Assemblages Reflect within Wetland Environmental Conditions and Land Use at Multiple Scales

    Science.gov (United States)

    We characterized regional patterns of the tidal channel benthic diatom community and examined the relative importance of local wetland and surrounding landscape level factors measured at multiple scales in structuring this assemblage. Surrounding land cover was characterized at ...

  7. A diatom-based biological condition gradient (BCG) approach for assessing impairment and developing nutrient criteria for streams.

    Science.gov (United States)

    Hausmann, Sonja; Charles, Donald F; Gerritsen, Jeroen; Belton, Thomas J

    2016-08-15

    Over-enrichment leading to excess algal growth is a major problem in rivers and streams. Regulations to protect streams typically incorporate nutrient criteria, concentrations of phosphorus and nitrogen that should not be exceeded in order to protect biological communities. A major challenge has been to develop an approach for both categorizing streams based on their biological conditions and determining scientifically defensible nutrient criteria to protect the biotic integrity of streams in those categories. To address this challenge, we applied the Biological Condition Gradient (BCG) approach to stream diatom assemblages to develop a system for categorizing sites by level of impairment, and then examined the related nutrient concentrations to identify potential nutrient criteria. The six levels of the BCG represent a range of ecological conditions from natural (1) to highly disturbed (6). A group of diatom experts developed a set of rules and a model to assign sites to these levels based on their diatom assemblages. To identify potential numeric nutrient criteria, we explored the relation of assigned BCG levels to nutrient concentrations, other anthropogenic stressors, and possible confounding variables using data for stream sites in New Jersey (n=42) and in surrounding Mid-Atlantic states, USA (n=1443). In both data sets, BCG levels correlated most strongly with total phosphorus and the percentage of forest in the watershed, but were independent of pH. We applied Threshold Indicator Taxa Analysis (TITAN) to determine change-points in the diatom assemblages along the BCG gradient. In both data sets, statistically significant diatom changes occurred between BCG levels 3 and 4. Sites with BCG levels 1 to 3 were dominated by species that grow attached to surfaces, while sites with BCG scores of 4 and above were characterized by motile diatoms. The diatom change-point corresponded with a total phosphorus concentration of about 50μg/L. Copyright © 2016 Elsevier B

  8. Diatom species abundance and morphologically-based dissolution proxies in coastal Southern Ocean assemblages

    Science.gov (United States)

    Warnock, Jonathan P.; Scherer, Reed P.

    2015-07-01

    Taphonomic processes alter diatom assemblages in sediments, thus potentially negatively impacting paleoclimate records at various rates across space, time, and taxa. However, quantitative taphonomic data is rarely included in diatom-based paleoenvironmental reconstructions and no objective standard exists for comparing diatom dissolution in sediments recovered from marine depositional settings, including the Southern Ocean's opal belt. Furthermore, identifying changes to diatom dissolution through time can provide insight into the efficiency of both upper water column nutrient recycling and the biological pump. This is significant in that reactive metal proxies (e.g. Al, Ti) in the sediments only account for post-depositional dissolution, not the water column where the majority of dissolution occurs. In order to assess the range of variability of responses to dissolution in a typical Southern Ocean diatom community and provide a quantitative guideline for assessing taphonomic variability in diatoms recovered from core material, a sediment trap sample was subjected to controlled, serial dissolution. By evaluating dissolution-induced changes to diatom species' relative abundance, three preservational categories of diatoms have been identified: gracile, intermediate, and robust. The relative abundances of these categories can be used to establish a preservation grade for diatom assemblages. However, changes to the relative abundances of diatom species in sediment samples may reflect taphonomic or ecological factors. In order to address this complication, relative abundance changes have been tied to dissolution-induced morphological change to the areolae of Fragilariopsis curta, a significant sea-ice indicator in Southern Ocean sediments. This correlation allows differentiation between gracile species loss to dissolution versus ecological factors or sediment winnowing. These results mirror a similar morphological dissolution index from a parallel study utilizing

  9. Diatom Assemblage in the Lake of Gaber Oun, Southern Libya

    Directory of Open Access Journals (Sweden)

    Abdelkader Elzen

    2012-07-01

    Full Text Available The lake of Gaber Oun in the southern district of Libya was studied to assess the diatom community composition in the littoral zone. Planktic and attached diatoms were listed and information on the constituent species made known (images are shown. Some criteria of the water characteristics are also given such as the pH, which is an average of 8.3, electrical conductivity which accounted for 1.4 µSim/cm1- and total dissolved salts (TDS of 189.0 mg/L1-.

  10. The application and testing of diatom-based indices of stream water ...

    African Journals Online (AJOL)

    The application and testing of diatom-based indices of stream water quality in Chinhoyi Town, Zimbabwe. ... PROMOTING ACCESS TO AFRICAN RESEARCH ... test the applicability of foreign diatom-based water quality assessment indices to ...

  11. Diatoms on the carapace of common snapping turtles: Luticola spp. dominate despite spatial variation in assemblages.

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    Shelly C Wu

    Full Text Available Filamentous algae are often visible on the carapaces of freshwater turtles and these algae are dominated by a few species with varying geographic distributions. Compared to filamentous algae, little is known about the much more speciose microalgae on turtles. Our objectives were to compare the diatom flora on a single turtle species (the common snapping turtle, Chelydra serpentina across part of its range to examine spatial patterns and determine whether specific diatom taxa were consistently associated with turtles (as occurs in the filamentous alga Basicladia spp.. Using preserved turtle specimens from museums, we systematically sampled diatoms on the carapaces of 25 snapping turtles across five states. The diverse diatom assemblages formed two groups-the southern Oklahoma group and the northern Illinois/Wisconsin/New York group, with Arkansas not differing from either group. Of the six diatom species found in all five states, four species are widespread, whereas Luticola cf. goeppertiana and L. cf. mutica are undescribed species, known only from turtles in our study. L. cf. goeppertiana comprised 83% of the diatom abundance on Oklahoma turtles and was relatively more abundant on southern turtles (Oklahoma and Arkansas than on northern turtles (where mean abundance/state was > 10%. L. cf. mutica was the most abundant species (40% on New York turtles. Some Luticola species are apparently turtle associates and results support a pattern of spatial variation in Luticola species, similar to that in Basicladia. Using museum specimens is an efficient and effective method to study the distribution of micro-epibionts.

  12. Diatoms on the carapace of common snapping turtles: Luticola spp. dominate despite spatial variation in assemblages

    Science.gov (United States)

    Wu, Shelly C.; Bergey, Elizabeth A.

    2017-01-01

    Filamentous algae are often visible on the carapaces of freshwater turtles and these algae are dominated by a few species with varying geographic distributions. Compared to filamentous algae, little is known about the much more speciose microalgae on turtles. Our objectives were to compare the diatom flora on a single turtle species (the common snapping turtle, Chelydra serpentina) across part of its range to examine spatial patterns and determine whether specific diatom taxa were consistently associated with turtles (as occurs in the filamentous alga Basicladia spp.). Using preserved turtle specimens from museums, we systematically sampled diatoms on the carapaces of 25 snapping turtles across five states. The diverse diatom assemblages formed two groups–the southern Oklahoma group and the northern Illinois/Wisconsin/New York group, with Arkansas not differing from either group. Of the six diatom species found in all five states, four species are widespread, whereas Luticola cf. goeppertiana and L. cf. mutica are undescribed species, known only from turtles in our study. L. cf. goeppertiana comprised 83% of the diatom abundance on Oklahoma turtles and was relatively more abundant on southern turtles (Oklahoma and Arkansas) than on northern turtles (where mean abundance/state was > 10%). L. cf. mutica was the most abundant species (40%) on New York turtles. Some Luticola species are apparently turtle associates and results support a pattern of spatial variation in Luticola species, similar to that in Basicladia. Using museum specimens is an efficient and effective method to study the distribution of micro-epibionts. PMID:28192469

  13. Diatom diversity in chronically versus episodically acidified adirondack streams

    Science.gov (United States)

    Passy, S.I.; Ciugulea, I.; Lawrence, G.B.

    2006-01-01

    The relationship between algal species richness and diversity, and pH is controversial. Furthermore, it is still unknown how episodic stream acidification following atmospheric deposition affects species richness and diversity. Here we analyzed water chemistry and diatom epiphyton dynamics and showed their contrasting behavior in chronically vs. episodically acidic streams in the Adirondack region. Species richness and diversity were significantly higher in the chronically acidic brown water stream, where organic acidity was significantly higher and the ratio of inorganic to organic monomeric aluminum significantly lower. Conversely, in the episodically acidic clear water stream, the inorganic acidity and pH were significantly higher and the diatom communities were very species-poor. This suggests that episodic acidification in the Adirondacks may be more stressful for stream biota than chronic acidity. Strong negative linear relationships between species diversity, Eunotia exigua, and dissolved organic carbon against pH were revealed after the influence of non-linear temporal trends was partialled out using a novel way of temporal modeling. ?? 2006 WILEY-VCH Verlag GmbH & Co. KGaA.

  14. Suggestions for diatom-based monitoring in intermittent streams

    Directory of Open Access Journals (Sweden)

    Falasco Elisa

    2016-01-01

    Full Text Available Over the last decades, river lentification processes and droughts have been dramatically spreading worldwide, due to global and local drastic changes due to human activities. Under this scenario, the evaluation of physical disturbance caused by intermittency and droughts has become more and more relevant. In this research, we compare samples collected in Mediterranean streams following both traditional and experimental approaches with the aim of understanding if diatom indices calculated from a new sampling strategy could provide additional information for the physical disturbance assessment. Moreover, we also evaluated the response of functional metrics. Our results demonstrated that even though an enhanced sampling method better reflects hydrological disturbance than the traditional one, diatom indices do not detect it. Conversely, functional traits proved to be important metrics for the hydrological disturbance assessment. In particular, benthic diatom chlorophyll a showed significantly lower values in sections more subject to droughts. With respect to ecological guilds, the motile taxa proved to be linked to depositional areas, which resulted important microhabitats (MHs to be explored in rivers affected by lentification. Including different MHs in the sampling process improves the information we can obtain from the analysis of the diatom community and presents important implications in documenting species distribution and autecology.

  15. Variation partitioning of diatom species data matrices: Understanding the influence of multiple factors on benthic diatom communities in tropical streams

    Energy Technology Data Exchange (ETDEWEB)

    Bere, Taurai, E-mail: tbere2015@gmail.com; Mangadze, Tinotenda; Mwedzi, Tongai

    2016-10-01

    Elucidating the confounding influence of multiple environmental factors on benthic diatom communities is important in developing water quality predictive models for better guidance of stream management efforts. The objective of this study was to explore the relative impact of metal pollution and hydromorphological alterations in, addition to nutrient enrichment and organic pollution, on diatom taxonomic composition with the view to improve stream diatom-based water quality inference models. Samples were collected twice at 20 sampling stations in the tropical Manyame Catchment, Zimbabwe. Diatom, macroinvertebrate communities and environmental factors were sampled and analysed. The variations in diatom community composition explained by different categories of environmental factors were analysed using canonical correspondence analysis using variance partitioning (partial CCA). The following variations were explained by the different predictor matrices: nutrient levels and organic pollution - 10.4%, metal pollution - 8.3% and hydromorphological factors - 7.9%. Thus, factors other than nutrient levels and organic pollution explain additional significant variation in these diatom communities. Development of diatom-based stream water quality inference models that incorporate metal pollution and hydromorphological alterations, where these are key issues, is thus deemed necessary. - Highlights: • Confounding influences of multiple environmental factors on diatom communities are elucidated. • Variation explained: nutrients + organic pollution - 10.4%, metals - 8.3% and hydromorphological factors - 7.9%. • Calibration of existing or development of new indices may be necessary.

  16. Variation partitioning of diatom species data matrices: Understanding the influence of multiple factors on benthic diatom communities in tropical streams

    International Nuclear Information System (INIS)

    Bere, Taurai; Mangadze, Tinotenda; Mwedzi, Tongai

    2016-01-01

    Elucidating the confounding influence of multiple environmental factors on benthic diatom communities is important in developing water quality predictive models for better guidance of stream management efforts. The objective of this study was to explore the relative impact of metal pollution and hydromorphological alterations in, addition to nutrient enrichment and organic pollution, on diatom taxonomic composition with the view to improve stream diatom-based water quality inference models. Samples were collected twice at 20 sampling stations in the tropical Manyame Catchment, Zimbabwe. Diatom, macroinvertebrate communities and environmental factors were sampled and analysed. The variations in diatom community composition explained by different categories of environmental factors were analysed using canonical correspondence analysis using variance partitioning (partial CCA). The following variations were explained by the different predictor matrices: nutrient levels and organic pollution - 10.4%, metal pollution - 8.3% and hydromorphological factors - 7.9%. Thus, factors other than nutrient levels and organic pollution explain additional significant variation in these diatom communities. Development of diatom-based stream water quality inference models that incorporate metal pollution and hydromorphological alterations, where these are key issues, is thus deemed necessary. - Highlights: • Confounding influences of multiple environmental factors on diatom communities are elucidated. • Variation explained: nutrients + organic pollution - 10.4%, metals - 8.3% and hydromorphological factors - 7.9%. • Calibration of existing or development of new indices may be necessary.

  17. Determinants of fish assemblage structure in Northwestern Great Plains streams

    Science.gov (United States)

    Mullen, J.A.; Bramblett, R.G.; Guy, C.S.; Zale, A.V.; Roberts, D.W.

    2011-01-01

    Prairie streams are known for their harsh and stochastic physical conditions, and the fish assemblages therein have been shown to be temporally variable. We assessed the spatial and temporal variation in fish assemblage structure in five intermittent, adventitious northwestern Great Plains streams representing a gradient of watershed areas. Fish assemblages and abiotic conditions varied more spatially than temporally. The most important variables explaining fish assemblage structure were longitudinal position and the proportion of fine substrates. The proportion of fine substrates increased proceeding upstream, approaching 100% in all five streams, and species richness declined upstream with increasing fine substrates. High levels of fine substrate in the upper reaches appeared to limit the distribution of obligate lithophilic fish species to reaches further downstream. Species richness and substrates were similar among all five streams at the lowermost and uppermost sites. However, in the middle reaches, species richness increased, the amount of fine substrate decreased, and connectivity increased as watershed area increased. Season and some dimensions of habitat (including thalweg depth, absolute distance to the main-stem river, and watershed size) were not essential in explaining the variation in fish assemblages. Fish species richness varied more temporally than overall fish assemblage structure did because common species were consistently abundant across seasons, whereas rare species were sometimes absent or perhaps not detected by sampling. The similarity in our results among five streams varying in watershed size and those from other studies supports the generalization that spatial variation exceeds temporal variation in the fish assemblages of prairie and warmwater streams. Furthermore, given longitudinal position, substrate, and stream size, general predictions regarding fish assemblage structure and function in prairie streams are possible. ?? American

  18. Penicillin-mediated changes in viable benthic diatom assemblages – insights about the relevance of bacteria across spatial and seasonal scales.

    Digital Repository Service at National Institute of Oceanography (India)

    DeCosta, P.M.; Anil, A.C.

    environment) and seasonal (post-monsoon, pre-monsoon, monsoon) scales. Penicillin treatment resulted in bacterial suppression and a reduction in diatoms at the intertidal and mangrove sites having stable pennate-dominated assemblages. Diatom response...

  19. Diatom assemblages as guides to flow conditions during the 2004 Indian Ocean tsunami at Phra Thong Island, Thailand

    Science.gov (United States)

    Sawai, Y.; Jankaew, K.; Martin, M. E.; Choowong, M.; Charoentitirat, T.; Prendergast, A.

    2008-12-01

    Diatom assemblages in the 2004 tsunami deposits of Phra Thong Island, Thailand represent flow conditions during the tsunami. The tsunami deposit consists of single or multiple graded beds. Diatom assemblages in the lowermost part of the deposit predominantly comprise beach and subtidal species. In the middle part of the deposit, the assemblages are dominated by marine plankton with increasing finer fractions. A mixed assemblage of freshwater, brackish, and marine species occupies the uppermost part of the deposit. Changes in flow conditions during the tsunami can explain these diatom assemblage variations. During fast current velocities, medium sand is deposited; only beach and subtidal diatoms that live attached to the sand can be incorporated into the tsunami deposit under these flow conditions. It is difficult for diatoms in suspension to settle out under fast current velocities. With decreasing current velocities, marine plankton can settle out of the water column .Finally, during the suspension stage (calm currents) between tsunami waves, the entrained freshwater, brackish, and marine species settle out with mud and plant trash. Fewer broken valves in the lowermost part of the deposit is probably a results of rapid entrainment, whilst selective breakage of marine plankton (Thalassionema nitzschioides, and Thalassiosira and Coscinodiscus spp.) in the middle part of the deposit probably results from abrasion by turbulent current before their deposition.

  20. Epipsammic diatoms in streams influenced by urban pollution, São Carlos, SP, Brazil

    Directory of Open Access Journals (Sweden)

    T. Bere

    Full Text Available Epipsammic diatoms have important implications for ecosystem processes in lotic environments. Most of the studies on benthic diatoms concentrate on epilithic diatoms and very little is known about epipsammic diatoms. The objective of this study was to assess epipsammic diatom communities in streams in relation to environmental conditions. Epipsammic diatoms and water quality sampling was done at 7 sites during summer base flow period (2008. Forward stepwise multiple regression and canonical correspondence analysis (CCA were used to determine environmental gradients along which species vary with physical and chemical variables. A total of 112 diatom species distributed among 44 genera were recorded. Altitude and the process of eutrophication played a significant role in structuring diatom communities in the study region.

  1. Individual variation in habitat use in two stream fish assemblages

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    Luisa Resende Manna

    2015-12-01

    Full Text Available The habitat use is an individual choice that is influenced by physical conditions such as substrate type, food resources availability and adequate depth. However, habitat use is often measured only through interspecific variability because intraspecific variability is supposed to be low. Here, the differences in habitat use by two stream fish assemblages in two different environments (Brazilian rainforest and semiarid were investigated at both interspecific and intraspecific levels. We performed 55 hours of underwater observation in a 200 meters long stretch in each stream and quantified the following habitat descriptors: (i water velocity, (ii distance from the stream bank, (iii substratum, (iv water column depth, (v aquatic cover, and (vi canopy percentage. To compare intra and interspecific variability we summarized the multivariate habitat use databases using Principal Components Analysis (PCA on Euclidean distance. An Analysis of Similarity (ANOSIM was performed to test the differences in habitat use by the two assemblages. Besides, in each fish community we did an Analysis of Variance (ANOVA to test within vs between species variability for individual position on each PCA axes. To go further than these univariate tests, the differences among the species and assemblages were tested with Permutational Multivariate Analysis of Variance (PERMANOVA. The habitat use between assemblages was significantly different (ANOSIM – R=0.14; p<0.001. PERMANOVA revealed significant differences among species in both assemblages (Rainforest - F=7.25; p<0.001; semiarid - F=4.84; p<0.001. Lower F values in the semiarid assemblage revealed a higher level of intraspecific variability for this assemblage. Our findings showed high intra and interspecific variability in both stream fish assemblages and highlight the importance of measuring individual’s differences for this feature of fish biodiversity. Additionally, the versatility described for tropical

  2. Estimation of the Potential Detection of Diatom Assemblages Based on Ocean Color Radiance Anomalies in the North Sea

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    Anne-Hélène Rêve-Lamarche

    2017-12-01

    Full Text Available Over the past years, a large number of new approaches in the domain of ocean-color have been developed, leading to a variety of innovative descriptors for phytoplankton communities. One of these methods, named PHYSAT, currently allows for the qualitative detection of five main phytoplankton groups from ocean-color measurements. Even though PHYSAT products are widely used in various applications and projects, the approach is limited by the fact it identifies only dominant phytoplankton groups. This current limitation is due to the use of biomarker pigment ratios for establishing empirical relationships between in-situ information and specific ocean-color radiance anomalies in open ocean waters. However, theoretical explanations of PHYSAT suggests that it could be possible to detect more than dominance cases but move more toward phytoplanktonic assemblage detection. Thus, to evaluate the potential of PHYSAT for the detection of phytoplankton assemblages, we took advantage of the Continuous Plankton Recorder (CPR survey, collected in both the English Channel and the North Sea. The available CPR dataset contains information on diatom abundance in two large areas of the North Sea for the period 1998-2010. Using this unique dataset, recurrent diatom assemblages were retrieved based on classification of CPR samples. Six diatom assemblages were identified in-situ, each having indicators taxa or species. Once this first step was completed, the in-situ analysis was used to empirically associate the diatom assemblages with specific PHYSAT spectral anomalies. This step was facilitated by the use of previous classifications of regional radiance anomalies in terms of shape and amplitude, coupled with phenological tools. Through a matchup exercise, three CPR assemblages were associated with specific radiance anomalies. The maps of detection of these specific radiances anomalies are in close agreement with current in-situ ecological knowledge.

  3. Individual variation in habitat use in two stream fish assemblages

    OpenAIRE

    Luisa Resende Manna; Carla Ferreira Rezende

    2015-01-01

    The habitat use is an individual choice that is influenced by physical conditions such as substrate type, food resources availability and adequate depth. However, habitat use is often measured only through interspecific variability because intraspecific variability is supposed to be low. Here, the differences in habitat use by two stream fish assemblages in two different environments (Brazilian rainforest and semiarid) were investigated at both interspecific and intraspecific levels. We perfo...

  4. USE OF DIATOMS TO ASSES WATER QUALITY OF ANTHROPOGENICALLY MODIFIED MATYSÓWKA STREAM

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    Teresa Noga

    2013-04-01

    Full Text Available Matysówka stream is small, under 6 km long watercourse, which is a right-bank tributary of Strug River. In 2009–2011studies on the subject of diversity of diatom communities using diatom indices IPS, GDI and TDI for water quality assessment were conducted. On the stream 271 diatom taxa were identified, among which: Achnanthidium minutissimum var. minutissimum, Navicula cryptotenella, N. gregaria, N. lanceolata, N. tripunctata, Nitzschia linearis, N. pusilla, N. recta, Planothidium frequentissimum, Rhoicosphenia abbreviata were the most frequent. Middle and lower section of Matysówka stream was characterized by increased concentrations of phosphates, nitrites, ammonium, total phosphorus and nitrogen, BOD5. On the basis of diatom indices IPS and GDI waters were characterized as III–IV quality classes, while the TDI index revealed the worst water quality classes (IV–V.

  5. Assessing the effects of climate and volcanism on diatom and chironomid assemblages in an Andean lake near Quito, Ecuador

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    Neal Michelutti

    2015-12-01

    Full Text Available The tropical Andes are undergoing climate changes that rival those occurring anywhere else on the planet, and are likely to have profound consequences for ecosystems. Paleolimnological investigations of remote mountain lakes can provide details of past environmental change, especially where monitoring data are absent. Here, we reconstruct fossil diatom and chironomid communities spanning the last several hundred years from an Andean lake located in an ecological reserve near Quito, Ecuador. Both diatoms and chironomids recorded assemblage shifts reflective of changing climate conditions. The diatoms are likely responding primarily to temperature-related limnological changes, recording an increase in the number of planktonic taxa in the most recent sediments. This change is consistent with warmer conditions that result in enhanced periods of thermal stratification, allowing planktonic species to proliferate. The chironomids appear to respond mainly to a change in precipitation regime, recording a greater number of terrestrial and semi-terrestrial taxa that have been transported to the lake. A thick tephra deposit at the base of the sediment core affected both diatom and chironomid assemblages. The diatoms registered a change in species composition highlighting the ability of certain taxa to rapidly colonize new environments. In contrast, the chironomids showed a marked drop in abundance immediately following the tephra, but no change in species composition. In both cases the ecological response was short-lived, illustrating the resiliency of the lake to return to baseline conditions following volcanic inputs.

  6. Groundwater declines are linked to changes in Great Plains stream fish assemblages.

    Science.gov (United States)

    Perkin, Joshuah S; Gido, Keith B; Falke, Jeffrey A; Fausch, Kurt D; Crockett, Harry; Johnson, Eric R; Sanderson, John

    2017-07-11

    Groundwater pumping for agriculture is a major driver causing declines of global freshwater ecosystems, yet the ecological consequences for stream fish assemblages are rarely quantified. We combined retrospective (1950-2010) and prospective (2011-2060) modeling approaches within a multiscale framework to predict change in Great Plains stream fish assemblages associated with groundwater pumping from the United States High Plains Aquifer. We modeled the relationship between the length of stream receiving water from the High Plains Aquifer and the occurrence of fishes characteristic of small and large streams in the western Great Plains at a regional scale and for six subwatersheds nested within the region. Water development at the regional scale was associated with construction of 154 barriers that fragment stream habitats, increased depth to groundwater and loss of 558 km of stream, and transformation of fish assemblage structure from dominance by large-stream to small-stream fishes. Scaling down to subwatersheds revealed consistent transformations in fish assemblage structure among western subwatersheds with increasing depths to groundwater. Although transformations occurred in the absence of barriers, barriers along mainstem rivers isolate depauperate western fish assemblages from relatively intact eastern fish assemblages. Projections to 2060 indicate loss of an additional 286 km of stream across the region, as well as continued replacement of large-stream fishes by small-stream fishes where groundwater pumping has increased depth to groundwater. Our work illustrates the shrinking of streams and homogenization of Great Plains stream fish assemblages related to groundwater pumping, and we predict similar transformations worldwide where local and regional aquifer depletions occur.

  7. Diatom Responses to Watershed Development and Potential Moderating Effects of Near-Stream Forest and Wetland Cover

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    Watershed development alters hydrology and delivers anthropogenic stressors to streams via pathways affected by impervious cover. We characterized relationships of diatom communities and metrics with upstream watershed % impervious cover (IC) and with riparian % forest and wetlan...

  8. Paleoenvironmental inference models from sediment diatom assemblages in Baffin Island lakes (Nunavut, Canada) and reconstruction of summer water temperature

    Energy Technology Data Exchange (ETDEWEB)

    Joynt, E. H. III; Wolfe, A. P. [Colorado Univ., Inst. of Arctic and Alpine Research, Boulder, CO (United States)

    2001-06-01

    Lake sediments are attractive repositories for paleoclimate proxy data because they are temporally continuous, undisturbed and datable. It is particularly true of lakes which are ubiquitous throughout the Arctic regions, enabling dense spatial coverage of sampling sites. In more recent times diatoms have been applied to a a variety of paleoenvironmental questions. However, these studies have been of limited usefulness because they lack a regional training set that would facilitate making quantitative paleoenvironmental inferences. This article provides this inferential tool, together with an example of its application. Conductivity, pH, summer lake water temperature, and mean annual air temperature have been identified as the significant controls over diatom assemblages from the surface sediments of 61 lakes on Baffin Island. Using weighted-averaging regression and calibration, predictive models for these parameters have been developed. Results show that the summer lake water temperature model provides realistic reconstructions when compared with other paleoenvironmental records. Over the past 5000 years the amplitude of reconstructed summer lake water temperature was found to be on the order of 4 degrees C, expressed primarily as progressive neoglacial cooling culminating in the Little Ice Age. Diatom-inferred summer water temperatures have increased by about 2 degrees C in the past 150 years, which is also in agreement with independent paleoclimatic reconstructions. The data obtained in this study complements similar efforts from the western Canadian Arctic and the northern reaches of Scandinavia, however, this is the first training set developed for lakes situated entirely north of the tree line. As such, it extends the applicability of diatoms for paleotemperature reconstructions well into the Arctic tundra biome. 45 refs., 1 tab., 10 figs., 1 appendix.

  9. Assessing the influence of multiple stressors on stream diatom metrics in the upper Midwest, USA

    Science.gov (United States)

    Munn, Mark D.; Waite, Ian R.; Konrad, Christopher P.

    2018-01-01

    Water resource managers face increasing challenges in identifying what physical and chemical stressors are responsible for the alteration of biological conditions in streams. The objective of this study was to assess the comparative influence of multiple stressors on benthic diatoms at 98 sites that spanned a range of stressors in an agriculturally dominated region in the upper Midwest, USA. The primary stressors of interest included: nutrients, herbicides and fungicides, sediment, and streamflow; although the influence of physical habitat was incorporated in the assessment. Boosted Regression Tree was used to examine both the sensitivity of various diatom metrics and the relative importance of the primary stressors. Percent Sensitive Taxa, percent Highly Motile Taxa, and percent High Phosphorus Taxa had the strongest response to stressors. Habitat and total phosphorous were the most common discriminators of diatom metrics, with herbicides as secondary factors. A Classification and Regression Tree (CART) model was used to examine conditional relations among stressors and indicated that fine-grain streams had a lower percentage of Sensitive Taxa than coarse-grain streams, with Sensitive Taxa decreasing further with increased water temperature (>30 °C) and triazine concentrations (>1500 ng/L). In contrast, streams dominated by coarse-grain substrate contained a higher percentage of Sensitive Taxa, with relative abundance increasing with lower water temperatures (water depth (water temperature appears to be a major limiting factor in Midwest streams; whereas both total phosphorus and percent fines showed a slight subsidy-stress response. While using benthic algae for assessing stream quality can be challenging, field-based studies can elucidate stressor effects and interactions when the response variables are appropriate, sufficient stressor resolution is achieved, and the number and type of sites represent a gradient of stressor conditions and at least a quasi

  10. Assemblage Organization in Stream Fishes: Effects of Enviromental Variation and Interspecific Interactions

    Science.gov (United States)

    Gary D. Grossman; Robert E. Ratajczak; Maurice Crawford; Mary C. Freeman

    1998-01-01

    We assessed the relative importance of environmental variation, interspecific competition for space, and predator abundance on assemblage structure and microhabitat use in a stream fish assemblage inhabiting Coweeta Creek, North Carolina, USA. Our study encompassed a l0-yr time span (1983-1992) and included some of the highest and lowest flows in the last 58 years. We...

  11. Aquatic insect assemblages associated with subalpine stream segment types in relict glaciated headwaters

    Science.gov (United States)

    Kubo, Joshua S.; Torgersen, Christian E.; Bolton, Susan M.; Weekes, Anne A.; Gara, Robert I.

    2013-01-01

    1. Aquatic habitats and biotic assemblages in subalpine headwaters are sensitive to climate and human impacts. Understanding biotic responses to such perturbations and the contribution of high-elevation headwaters to riverine biodiversity requires the assessment of assemblage composition among habitat types. We compared aquatic insect assemblages among headwater stream segment types in relict glaciated subalpine basins in Mt. Rainier National Park, Washington, USA. 2. Aquatic insects were collected during summer and autumn in three headwater basins. In each basin, three different stream segment types were sampled: colluvial groundwater sources, alluvial lake inlets, and cascade-bedrock lake outlets. Ward's hierarchical cluster analysis revealed high β diversity in aquatic insect assemblages, and non-metric multidimensional scaling indicated that spatial and temporal patterns in assemblage composition differed among headwater stream segment types. Aquatic insect assemblages showed more fidelity to stream segment types than to individual basins, and the principal environmental variables associated with assemblage structure were temperature and substrate. 3. Indicator species analyses identified specific aquatic insects associated with each stream segment type. Several rare and potentially endemic aquatic insect taxa were present, including the recently described species, Lednia borealis (Baumann and Kondratieff). 4. Our results indicate that aquatic insect assemblages in relict glaciated subalpine headwaters were strongly differentiated among stream segment types. These results illustrate the contribution of headwaters to riverine biodiversity and emphasise the importance of these habitats for monitoring biotic responses to climate change. Monitoring biotic assemblages in high-elevation headwaters is needed to prevent the potential loss of unique and sensitive biota.

  12. The Role of Regional Factors in Structuring Ouachita Mountain Stream Assemblages

    Science.gov (United States)

    Lance R. Williams; Christopher M. Taylor; Melvin L. Warren; J. Alan Clingenpeel

    2004-01-01

    Abstract - We used Basin Area Stream Survey data from the USDA Forest Service, Ouachita National Forest to evaluate the relationship between regional fish and macroinvertebrate assemblages and environmental variability (both natural and anthropogenic). Data were collected for three years (1990-1992) from six hydrologically variable stream systems in...

  13. Paleolimnological assessment of nutrient enrichment on diatom assemblages in a priori defined nitrogen- and phosphorus-limited lakes downwind of the Athabasca Oil Sands, Canada

    Directory of Open Access Journals (Sweden)

    Kathleen R. Laird

    2017-04-01

    Full Text Available As the industrial footprint of the Athabasca Oil Sands Region (AOSR continues to expand, concern about the potential impacts of pollutants on the surrounding terrestrial and aquatic ecosystems need to be assessed. An emerging issue is whether recent increases in lake production downwind of the development can be linked to AOSR activities, and/or whether changing climatic conditions are influencing lake nutrient status. To decipher the importance of pollutants, particularly atmospheric deposition of reactive nitrogen (Nr, and the effects of climate change as potential sources of increasing lake production, lakes from both within and outside of the nitrogen deposition zone were analyzed for historical changes in diatom assemblages. Lake sediment cores were collected from a priori defined nitrogen (N - and phosphorus (P - limited lakes within and outside the N plume associated with the AOSR. Diatom assemblages were quantified at sub-decadal resolution since ca. 1890 to compare conditions prior to oil sands expansion and regional climate warming, to the more recent conditions in each group of lakes (Reference and Impacted, N- and P-limited lakes. Analyses of changes in assemblage similarity and species turnover indicates that changes in diatom assemblages were minimal both within and across all lake groups.  Small changes in percent composition of planktonic taxa, particularly small centric taxa (Discostella and Cyclotella species and pennate taxa, such as Asterionella formosa and Fragilaria crotonensis, occurred in some of the lakes. While these changes were consistent with potential climate effects on algal growth, water column stability and other factors; the timing and direction of biotic changes were variable among sites suggesting that any apparent response to climate was lake dependent. The absence of a consistent pattern of diatom changes associated with receipt of reactive nitrogen or intrinsic nutrient-limitation status of the lake

  14. Thermal and hydrologic responses to climate change predict marked alterations in boreal stream invertebrate assemblages.

    Science.gov (United States)

    Mustonen, Kaisa-Riikka; Mykrä, Heikki; Marttila, Hannu; Sarremejane, Romain; Veijalainen, Noora; Sippel, Kalle; Muotka, Timo; Hawkins, Charles P

    2018-06-01

    Air temperature at the northernmost latitudes is predicted to increase steeply and precipitation to become more variable by the end of the 21st century, resulting in altered thermal and hydrological regimes. We applied five climate scenarios to predict the future (2070-2100) benthic macroinvertebrate assemblages at 239 near-pristine sites across Finland (ca. 1200 km latitudinal span). We used a multitaxon distribution model with air temperature and modeled daily flow as predictors. As expected, projected air temperature increased the most in northernmost Finland. Predicted taxonomic richness also increased the most in northern Finland, congruent with the predicted northwards shift of many species' distributions. Compositional changes were predicted to be high even without changes in richness, suggesting that species replacement may be the main mechanism causing climate-induced changes in macroinvertebrate assemblages. Northern streams were predicted to lose much of the seasonality of their flow regimes, causing potentially marked changes in stream benthic assemblages. Sites with the highest loss of seasonality were predicted to support future assemblages that deviate most in compositional similarity from the present-day assemblages. Macroinvertebrate assemblages were also predicted to change more in headwaters than in larger streams, as headwaters were particularly sensitive to changes in flow patterns. Our results emphasize the importance of focusing protection and mitigation on headwater streams with high-flow seasonality because of their vulnerability to climate change. © 2018 John Wiley & Sons Ltd.

  15. Effect of oil palm on the Plecoptera and Trichoptera (Insecta) assemblages in streams of eastern Amazon.

    Science.gov (United States)

    de Paiva, Carina Kaory Sasahara; de Faria, Ana Paula Justino; Calvão, Lenize Batista; Juen, Leandro

    2017-08-01

    The production of oil palm is expected to increase in the Amazon region. However, expansion of oil palm plantation leads to significant changes in the physical structure of aquatic ecosystems, mainly through the reduction of riparian vegetation that is essential for aquatic biodiversity. Here, we evaluated the effects of oil palm on the physical habitat structure of Amazonian stream environments and assemblages of Plecoptera and Trichoptera (PT), ​both found in these streams. We compared streams sampled in oil palm plantations (n = 13) with natural forest areas ("reference" streams, n = 8), located in the eastern Amazon, Brazil. Our results showed that oil palm streams were more likely to be in close proximity to roads, had higher pH values, and higher amounts of fine substrate deposited in the channel than reference streams. Further, these environmental changes had important effects on the aquatic invertebrate assemblages, reducing the abundance and richness of PT. Nevertheless, the genera composition of the assemblages did not differ between reference and oil palm (PERMANOVA, pseudo-F (1,19)  = 1.891; p = 0.111). We conclude that oil palm production has clear negative impacts on aquatic environments and PT assemblages in Amazonian streams. We recommend that oil palm producers invest more in planning of road networks to avoid the construction of roads near to the riparian vegetation. This planning can minimize impacts of oil palm production on aquatic systems in the Amazon.

  16. A multi-scaled approach to evaluating the fish assemblage structure within southern Appalachian streams USA.

    Science.gov (United States)

    Kirsch, Joseph; Peterson, James T.

    2014-01-01

    There is considerable uncertainty about the relative roles of stream habitat and landscape characteristics in structuring stream-fish assemblages. We evaluated the relative importance of environmental characteristics on fish occupancy at the local and landscape scales within the upper Little Tennessee River basin of Georgia and North Carolina. Fishes were sampled using a quadrat sample design at 525 channel units within 48 study reaches during two consecutive years. We evaluated species–habitat relationships (local and landscape factors) by developing hierarchical, multispecies occupancy models. Modeling results suggested that fish occupancy within the Little Tennessee River basin was primarily influenced by stream topology and topography, urban land coverage, and channel unit types. Landscape scale factors (e.g., urban land coverage and elevation) largely controlled the fish assemblage structure at a stream-reach level, and local-scale factors (i.e., channel unit types) influenced fish distribution within stream reaches. Our study demonstrates the utility of a multi-scaled approach and the need to account for hierarchy and the interscale interactions of factors influencing assemblage structure prior to monitoring fish assemblages, developing biological management plans, or allocating management resources throughout a stream system.

  17. Functional differentiation between fish assemblages from forested and deforested streams

    Directory of Open Access Journals (Sweden)

    Fabrício Barreto Teresa

    Full Text Available We tested the hypothesis that streams in deforested areas shelter different fish communities to nearby forested areas, and that these disparities are due to environmental parameters that limit or benefit different species according to their functional traits. We compared the community composition of three south east Brazilian streams flanked by riparian forest with three nearby streams in deforested areas. The following functional traits were considered: diet, habitat use, water flow preference, size, and hypoxia tolerance. Differentiation between forested and deforested streams corresponded with the different contributions of three functional groups. Species reported in the literature to be hypoxia tolerant, and exhibiting a variable combination of the other traits prevailed in deforested streams, although we did not find substantial differences in oxygen levels between forested and deforested streams. In forested streams, benthic species associated with a high water flow and an insectivorous diet were dominant. Changes in streams induced by deforestation which are associated with habitat availability, food resources, and physicochemical conditions appear to restrict the occurrence of specialized species and instead benefit tolerant generalists.

  18. Riparian forest buffers mitigate the effects of deforestation on fish assemblages in tropical headwater streams.

    Science.gov (United States)

    Lorion, Christopher M; Kennedy, Brian P

    2009-03-01

    Riparian forest buffers may play a critical role in moderating the impacts of deforestation on tropical stream ecosystems, but very few studies have examined the ecological effects of riparian buffers in the tropics. To test the hypothesis that riparian forest buffers can reduce the impacts of deforestation on tropical stream biota, we sampled fish assemblages in lowland headwater streams in southeastern Costa Rica representing three different treatments: (1) forested reference stream reaches, (2) stream reaches adjacent to pasture with a riparian forest buffer averaging at least 15 m in width on each bank, and (3) stream reaches adjacent to pasture without a riparian forest buffer. Land cover upstream from the study reaches was dominated by forest at all of the sites, allowing us to isolate the reach-scale effects of the three study treatments. Fish density was significantly higher in pasture reaches than in forest and forest buffer reaches, mostly due to an increase in herbivore-detritivores, but fish biomass did not differ among reach types. Fish species richness was also higher in pasture reaches than in forested reference reaches, while forest buffer reaches were intermediate. Overall, the taxonomic and trophic structure of fish assemblages in forest and forest buffer reaches was very similar, while assemblages in pasture reaches were quite distinct. These patterns were persistent across three sampling periods during our 15-month study. Differences in stream ecosystem conditions between pasture reaches and forested sites, including higher stream temperatures, reduced fruit and seed inputs, and a trend toward increased periphyton abundance, appeared to favor fish species normally found in larger streams and facilitate a native invasion process. Forest buffer reaches, in contrast, had stream temperatures and allochthonous inputs more similar to forested streams. Our results illustrate the importance of riparian areas to stream ecosystem integrity in the tropics

  19. Diatom, cyanobacterial and microbial mats as indicators of hydrocarbon contaminated Arctic streams and waters

    Energy Technology Data Exchange (ETDEWEB)

    Ziervogel, H.; Selann, J.; Adeney, B. [EBA Engineering Consultants Ltd., Edmonton, AB (Canada); Nelson, J.A. [J.B. Services, Sarnia, ON (Canada); Murdock, E. [Nunavut Power, Iqaluit (Canada)

    2003-07-01

    An environmental assessment conducted at Repulse Bay, Nunavut in the summer of 2001 revealed a recent diesel spill flowing from the groundwater into a creek. The spill had not been reported. When Arctic surface waters mix with hydrocarbon impacted groundwater and sediments, distinctive mats of diatom, cyanobacteria and other bacteria are formed. These mats have the potential for phytoremediation of hydrocarbons. This paper explained the apparent dominance of mats in contaminated Arctic waters and why they promote biodegradation of hydrocarbons. Hydrocarbon-contaminated soils and groundwater are generally anaerobic. The higher dissolved carbon dioxide in polluted soils and groundwater can benefit photosynthetic cyanobacteria and diatom found in oligotrophic, lower alkalinity Arctic waters. The anaerobic and aerobic bacteria can potentially take advantage of the hydrogen substrate and the nitrogen fixing abilities of the cyanobacteria. Zooplankton predators may be killed off by the toxicity of the polluted groundwater. The paper provides examples where a microbial mat reduced the sulfate content of a hydrocarbon-impacted Arctic stream by 100 ppm, and where a pond covered in a benthic microbial mat showed no evidence of hydrocarbons in the water overlying sediments contaminated with hydrocarbons at concentrations measured at 30,000 ppm. 19 refs., 3 tabs., 8 figs.

  20. Effects of Management Legacies on Stream Fish and Aquatic Benthic Macroinvertebrate Assemblages

    Science.gov (United States)

    Quist, Michael C.; Schultz, Randall D.

    2014-09-01

    Fish and benthic macroinvertebrate assemblages often provide insight on ecological conditions for guiding management actions. Unfortunately, land use and management legacies can constrain the structure of biotic communities such that they fail to reflect habitat quality. The purpose of this study was to describe patterns in fish and benthic macroinvertebrate assemblage structure, and evaluate relationships between biota and habitat characteristics in the Chariton River system of south-central Iowa, a system likely influenced by various potential management legacies (e.g., dams, chemical removal of fishes). We sampled fishes, benthic macroinvertebrates, and physical habitat from a total of 38 stream reaches in the Chariton River watershed during 2002-2005. Fish and benthic macroinvertebrate assemblages were dominated by generalist species tolerant of poor habitat quality; assemblages failed to show any apparent patterns with regard to stream size or longitudinal location within the watershed. Metrics used to summarize fish assemblages and populations [e.g., presence-absence, relative abundance, Index of Biotic Integrity for fish (IBIF)] were not related to habitat characteristics, except that catch rates of piscivores were positively related to the depth and the amount of large wood. In contrast, family richness of benthic macroinvertebrates, richness of Ephemeroptera, Trichoptera, and Plecoptera taxa, and IBI values for benthic macroinvertebrates (IBIBM) were positively correlated with the amount of overhanging vegetation and inversely related to the percentage of fine substrate. A long history of habitat alteration by row-crop agriculture and management legacies associated with reservoir construction has likely resulted in a fish assemblage dominated by tolerant species. Intolerant and sensitive fish species have not recolonized streams due to downstream movement barriers (i.e., dams). In contrast, aquatic insect assemblages reflected aquatic habitat, particularly

  1. Diel variation in the structure of fish assemblages in south western Amazon streams

    Directory of Open Access Journals (Sweden)

    Igor David da Costa

    Full Text Available Abstract: Aim We investigate the influence of luminosity, habitat conservation and pluviometric periods in fish assemblages of in pasture and forest small streams in western amazon. Methods Sampling was conducted every two months from July 2013 to April 2014 in nine first- and second-order streams using seine nets and dip nets during the day and night. Fish composition, richness and total abundance were determined for each sampling period. The PERMANOVA was used to evaluate the effects of land use, season, and photoperiod, on fish assemblages. Fish assemblage structure for each stream in the presence and absence of photoperiod was ordered by NMDS analysis. Results In the light period, 3,484 specimens from 69 species were collected, while 4,574 specimens from 71 species where collected in the dark period. No significant differences in abundance and species richness were recorded between the presence and absence of luminosity periods, rainy and dry seasons and streams in forest and deforested areas. We found evidence of the dark phase composition and richness of exclusive species (22% of species collected were found at night, which were greater than in the light period (20% of species. Conclusion Despite our failure to identify any nycterohemeral segregation, the results complement existing knowledge of regional ichthyofauna and help provide a better understanding of the distributional, behavioral and functional ecological patterns of fish assemblages.

  2. The scales of variability of stream fish assemblage at tributary confluences

    Directory of Open Access Journals (Sweden)

    István Czeglédi

    2015-12-01

    Full Text Available Tributary confluences play an important role in the dispersal of organisms, and consequently, in shaping regional scale diversity in stream networks. Despite their importance in dispersal processes, little is known about how ecological assemblages are organized in these habitats. We studied the scales of variability of stream fish assemblages over three seasons using a hierarchical sampling design, which incorporated three tributaries, three sites at the mouth of each tributary and using four sampling units at each site. We found strong scale dependent variability in species richness, composition and relative abundance. Most of the variation was accounted for by the interactive effect of season, between stream and between site effects, while habitat structure of the sampling units had a relatively minor role. Species richness showed a continuous decrease from the mainstem river in most cases, while species composition and relative abundance changed less consistently along the longitudinal profile. Consequently, we found that not only the junctions presented a strong filter on the species pool, but some species were filtered out if they passed this critical habitat bottleneck. Spatial position of the tributaries along the river also contributed to assemblage variability in the confluences. Overall, our results suggest high variability in fish assemblages across multiple scales at tributary confluences. Environmental management should take a more critical care on the filtering role of tributary confluences in species dispersal, for better understanding patterns and processes in the branches of dendritic stream networks.

  3. Comparison of fish assemblages in two littoral habitats in a Neotropical morichal stream in Venezuela

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    Carmen G. Montaña

    Full Text Available Morichales are lowland streams in South American savannas with riparian forest dominated by the moriche palm (Mauritia flexuosa. We sampled littoral habitats from ten flooded vegetated patches (dominated by Mauritiella aculeate and six sand banks in two months of the dry season (Feb-Mar 2005 in a stream in the savannas of Apure State, Venezuela. We collected samples that compromised 12,407 individual fishes of 107 species. Small-bodied fishes (< 100 mm, representing diverse trophic and life history strategies, were abundant. The most abundant species were in the families Characidae and Cichlidae. Fish assemblages from flooded vegetated patches differed significantly from those on adjacent sand banks. High structural complexity along vegetated shoreline habitats of morichal streams likely contributes to species richness and affects assemblage composition.

  4. Influence of environmental factors on fish assemblages in streams of the Elbe and Oder basins

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    Luboš Kůra

    2015-11-01

    Full Text Available The effects of environmental parameters on changes in the structure of fish assemblages were studied in the Elbe and the Odra basin. Research was done at 819 sites surveyed in the field during the period 1993-2007. The impact of 46 factors derived from the maps through a GIS was tested as well as the impact of 10 factors recognized in the field. To evaluate the influence of these factors the indirect (DCA and direct (CCA multivariate cluster analysis were used. Analyses were performed with data on presence-absence and relative abundance of each species. DCA well reflects changes in assemblages in the longitudinal profile of streams. CCA refers to a significant influence of regional and temporal variability and influence of individual factors. The fish assemblages are best characterized by distance from the source location, stream slope, altitude of locality, representation of arable land in the basin, number of ponds in the sub-basin above the locality, type of waters (salmonid or cyprinid, and water temperature (the only of the parameters of the field. The analyzed factors better reflect the variability in fish assemblages of the Odra than of Elbe river basin. The analysis showed good practical efficiency of processing information from a large sample of data from ichthyological surveys. The tools of GIS and the use of statistical methods make possible to characterize basic ecological requirements of most species and specify conditions determining specific composition of fish assemblages.

  5. Using biodiversity of diatoms to identify hydrological connectivity in the hillslope-riparian zone-stream system

    Science.gov (United States)

    Wetzel, C. E.; Martínez-Carreras, N.; Ector, L.; Hlubikova, D.; Frentress, J.; McDonnell, J. J.; Hoffmann, L.; Pfister, L.

    2012-04-01

    In recent years, there have been increasingly calls for new eco-hydrological approaches to answer questions on water source and connectivity in the landscape. Diatoms are one of the most common and diverse algal groups, and offer the potential for the identification of reproducible flow patterns and a link to underlying watershed behaviour. Our preliminary investigations on the potential for terrestrial diatoms to detect the onset/cessation of surface runoff suggested that diatoms can contribute to confirm or reject the existence of a surface runoff component in total runoff, thereby helping to constrain assumptions made on a potential surface runoff component in a conventional tracer based hydrograph separation. Our investigations currently focus on the Attert River basin (Luxembourg, Europe) and the HJ Andrews experimental forest (Oregon, USA). Here we show results from the schistose Weierbach experimental catchment (0.45 km2), located in the Attert River basin. Ordination analysis revealed a clear distinction between communities belonging to the river bed substrate and the riparian zone. Drift samples corresponding to stream water show a mixed composition of diatoms stemming from the river bed substrate and the riparian zone. Ongoing investigations focus on the composition of hillslope communities. In winter, long-lasting low intensity rainfall events generate a two-tailed hydrograph response of the Weierbach, consisting in an immediate reaction to precipitation, followed by a delayed and much more significant rise of the hydrograph. For these events, mixing diagrams (SiO2 & Absorbance) suggest a substantial contribution of the soil water component to total runoff, with groundwater and especially overland flow remaining insignificant. Terrestrial diatom abundance appeared to be very sensitive to incident precipitation (rising to +/- 15% of the total diatom population), suggesting a rapid connectivity between the soil surface and the stream. In summer, short and

  6. Assessing effects of stocked trout on nongame fish assemblages in southern Appalachian Mountain streams

    Science.gov (United States)

    Weaver, D.; Kwak, Thomas J.

    2013-01-01

    Fisheries managers are faced with the challenge of balancing the management of recreational fisheries with that of conserving native species and preserving ecological integrity. The negative effects that nonnative trout species exert on native trout are well documented and include alteration of competitive interactions, habitat use, and production. However, the effects that nonnative trout may exert on nongame fish assemblages are poorly understood. Our objectives were to quantify the effects of trout stocking on native nongame fish assemblages intensively on one newly stocked river, the North Toe River, North Carolina, and extensively on other southern Appalachian Mountain streams that are annually stocked with trout. In the intensive study, we adopted a before-after, control-impact (BACI) experimental design to detect short-term effects on the nongame fish assemblage and found no significant differences in fish density, species richness, species diversity, or fish microhabitat use associated with trout stocking. We observed differences in fish microhabitat use between years, however, which suggests there is a response to environmental changes, such as the flow regime, which influence available habitat. In the extensive study, we sampled paired stocked and unstocked stream reaches to detect long-term effects from trout stocking; however, we detected no differences in nongame fish density, species richness, species diversity, or population size structure between paired sites. Our results revealed high inherent system variation caused by natural and anthropogenic factors that appear to overwhelm any acute or chronic effect of stocked trout. Furthermore, hatchery-reared trout may be poor competitors in a natural setting and exert a minimal or undetectable impact on native fish assemblages in these streams. These findings provide quantitative results necessary to assist agencies in strategic planning and decision making associated with trout fisheries, stream

  7. Metrics derived from fish assemblages as indicators of environmental degradation in Cerrado streams

    Directory of Open Access Journals (Sweden)

    Milton P. Ávila

    2018-04-01

    Full Text Available ABSTRACT The development of effective monitoring tools depends on finding sensitive metrics that are capable of detecting the most important environmental impacts at a given region. We assessed if metrics derived from stream fish assemblages reflect physical habitat degradation and changes in land cover. We sampled the ichthyofauna and environmental characteristics of 16 stream sites of first and second order in the Upper Tocantins River basin. The streams were classified according to their environmental characteristics into reference (n = 5, intermediate (n = 4, and impacted (n = 7. A total of 4,079 individuals in five orders, 12 families, and 30 species were collected. Of the 20 metrics tested, eight were non-collinear and were tested for their performance in discriminating among groups of streams. Three metrics were sensitive to the gradient of degradation: Berger-Parker dominance index, percentage of characiform fish, and percentage of rheophilic individuals. Some commonly used metrics did not reflect the disturbances and many others were redundant with those that did. These results indicate that the metrics derived from fish assemblages may be informative for identifying the conservation status of streams, with the potential to be used in biomonitoring.

  8. Relations between altered stramflow variability and fish assemblages in Eastern USA streams

    Science.gov (United States)

    Meador, Michael R.; Carlisle, Daren M.

    2012-01-01

    Although altered streamflow has been implicated as a major factor affecting fish assemblages, understanding the extent of streamflow alteration has required quantifying attributes of the natural flow regime. We used predictive models to quantify deviation from expected natural streamflow variability for streams in the eastern USA. Sites with >25% change in mean daily streamflow variability compared with what would be expected in a minimally disturbed environment were defined as having altered streamflow variability, based on the 10th and 90th percentiles of the distribution of streamflow variability at 1279 hydrological reference sites. We also used predictive models to assess fish assemblage condition and native species loss based on the proportion of expected native fish species that were observed. Of the 97 sites, 49 (50.5%) were classified as altered with reduced streamflow variability, whereas no sites had increased streamflow variability. Reduced streamflow variability was related to a 35% loss in native fish species, on average, and a >50% loss of species with a preference for riffle habitats. Conditional probability analysis indicated that the probability of fish assemblage impairment increased as the severity of altered streamflow variability increased. Reservoir storage capacity and wastewater discharges were important predictors of reduced streamflow variability as revealed by random forest analysis. Management and conservation of streams will require careful consideration of natural streamflow variation and potential factors contributing to altered streamflow within the entire watershed to limit the loss of critical stream habitats and fish species uniquely adapted to live in those habitats.

  9. Diatom Surface Sediment Assemblages from the Bering Sea Shelf: a Tossed Salad or Faithful Recorder of 50 Years of Environmental Change?

    Science.gov (United States)

    Caissie, B.; Brigham-Grette, J.; Kanamaru-Shinn, K.

    2010-12-01

    Recent environmental change in the Bering Sea includes a shift from the negative to positive phase of the Pacific Decadal Oscillation in 1976/77, a secondary shift in sea level pressure and sea surface temperatures in 1998, increasing sea surface temperatures, an earlier spring, an increase in the number of days that sea ice is present along the shelf-slope break, and a decrease in the number of days that sea ice is present in the Chukchi Sea and Arctic Ocean. These physical changes have manifest biological changes such as a northward migration of invertebrates and fish from the southern Bering Sea and shifts in the timing and duration of sea-ice related primary productivity and the spring bloom. We aim to see if diatom sediment assemblages are faithful recorders of these ecological changes in the Bering Sea or if bioturbation has essentially mixed today’s rapid change down core such that the signal is either muted or no longer apparent. Six continental shelf areas were examined in the Bering Sea ranging from northeast of St. Lawrence Island to the shelf-slope break in the south-central Bering Sea. Diatom assemblages from core tops collected as part of the PROBES program in the 1960s were compared to core tops taken nearby (7 m) multi-year ice so their decline may be related to the decrease in multi-year ice over the past 30 years. Additionally, in most cases, species diversity has declined over the past 50 years with Fragilariopsis oceanica and Fragilariopsis cylindrus accounting for a greater percentage of the sediment assemblages today. These two species are collectively considered indicators of seasonal sea ice; their relative abundance peaks when ice is present for 5 months per year. Ongoing down core analyses in these six areas will further reveal the nature of these assemblage changes.

  10. Investigation of environmental change on the Tega Lake based on lake sediment analysis. Pt. 2. Dating of sediment by the lead-210/cesium-137 method and environmental change detected by the diatom assemblage analysis

    International Nuclear Information System (INIS)

    Hamada, Takaomi

    1998-01-01

    Sediment collected in the Tega Lake was dated by lead-210/cesium-137 method and environmental change in the Tega Lake was investigated by analysis of diatom remain assemblages in the sediment. Dating of the lead-210/cesium-137 method proved that the surface 30 cm-thickness of sediment in the Tega Lake was deposited during the recent 50 years. Diatom remain assemblage change in the Hon-Tega Lake sediment started in the early half of 1960's and the changes is characterized decrease of Fragilaria construens, that does not prefer to inhabit eutrophic water, and increase of Cyclotella meneghiniana that prefers to inhabit eutrophic water. This diatom assemblage change indicates that the Tega Lake was eutrophicated, and probably suggests water pollution in the Tega Lake. It is detected that influence of residential development around the Tega Lake and reclaiming by drainage on the Tega Lake. (author)

  11. DIATOMS (BACILLARIOPHYCEAE IN RIVERS AND STREAMS AND ON CULTIVATED SOILS OF THE PODKARPACIE REGION IN THE YEARS 2007–2011

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    Teresa Noga

    2014-01-01

    Full Text Available Diatoms Bacillariophyceae are a specialized, systematic group of algae, living in different types of ecosystems, and they are very good indicators of water quality. Recently, detailed studies have been carried out in the territory of the Podkarpacie Province on the diversity of diatoms in running waters. The area of study covers mostly the catchment of the biggest rivers of the province (mainly the River Wisłok and cultivated soils. Running waters in the Podkarpacie Province are characterized by a huge species richness of diatoms, 738 different taxa have been found so far. The highest number of taxa was noted in the Wisłok River (400, while the Żołynianka and Różanka streams and the Mleczka were also characterized by huge diversity (from 200 to over 350 taxa. In the majority of studied sites diatoms of alkaline (pH>7 and nutrient rich (eutrophic waters dominated: Navicula lanceolata, N. gregaria, N. capitatoradiata, Nitzschia palea, N. dissipata ssp. dissipata, Achnanthidium minutissimum var. minutissimum, A. pyrenaicum, Amphora pediculus, Diatoma vulgaris, Rhoicosphenia abbreviata, Planothidium lanceolatum, Cocconeis pediculus and C. placentula var. lineata. About 150 taxa were indentified on cultivated soils, among which the largest populations were formed by Hantzschia amphioxys, Mayamaea atomus, Nitzschia palea, N. pusilla, Pinnularia obscura and Stauroneis thermicola.

  12. Effects of anthropogenic impacts on benthic macroinvertebrates assemblages in subtropical mountain streams

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    Leticia M. Mesa

    2013-12-01

    Full Text Available The nature of the riparian and surrounding landscape has been modified by anthropogenic activities, which may subsequently alter the composition and functional structure of macroinvertebrate assemblages. The effect of these changes on function of benthic fauna is difficult to assess due to the scarce knowledge on functional structures in tropical streams. In this study we evaluate whether sites impacted and unimpacted by anthropogenic alterations differed in assemblage composition and density, richness and diversity of each functional feeding group. The selection of the sites was related to their distinct riparian characteristics, following the QBRy riparian quality index. Collector-gatherer was the dominant functional feeding group, comprising 91% of total density, whereas the proportion of shredders was very low, representing less of 0.5% of total density. Asemblage composition of macroinvertebrates differed between impacted and unimpacted sites. Predators were dominant in taxa number, representing about 60% of total taxa richness. In addition, the diversity and richness of collector-gatherers differed significantly between degraded and unimpacted sites, reflecting the sensitivity of this group to environmental changes and the utility to be used in the assessment of anthropogenic modifications. The results of this study reinforce the idea that riparian corridor management is critical for the distribution of macroinvertebrate assemblages as well as functional organization of lotic streams.

  13. Hyporheic invertebrate assemblages at reach scale in a Neotropical stream in Brazil.

    Science.gov (United States)

    Mugnai, R; Messana, G; Di Lorenzo, T

    2015-11-01

    In the Neotropical Region, information concerning hyporheic communities is virtually non-existent. We carried out a sampling survey in the hyporheic zone of the Tijuca River, in the Tijuca National Park, located in the urban area of the city of Rio de Janeiro. Biological samples from the hyporheic zone were collected in three different stream reaches, in June 2012. The main objectives were: 1) to describe the structure of invertebrate assemblages in the hyporheic zone of a neotropical stream; 2) to apply a reach-scale approach in order to investigate spatial patterns of the hyporheic assemblages in relation to hydrology, depth and microhabitat typology. A total of 1460 individuals were collected and identified in 31 taxa belonging to Nematoda, Annelida, Crustacea, Hydrachnidia and Insecta. The class Insecta dominated the upper layer of the hyporheic zone. Copepods were the most abundant taxon among crustaceans and occurred mostly in the upwelling areas of the reaches. The results of this study represent one of the few contributions so far about hyporheic invertebrate assemblages of the Neotropical Region.

  14. Using diatom assemblages and sulphur in sediments to uncover the effects of historical mining on Lake Arnoux (Quebec, Canada: A retrospective of economic benefits versus environmental debt

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    Paul Brian Hamilton

    2015-09-01

    Full Text Available Monitoring changes in environmental conditions is increasingly important as the Canadian economic infrastructure ramps up exploration and mining development in the more inaccessible northern regions of Canada. Governments are concurrently assessing effects from past mining activities and absorbing the economic cost to society with on-going remediation and monitoring initiatives. The abandoned Aldermac mine in northwestern Quebec, mined from 1932–1943, is an excellent case study for assessing the state of environmental and economic effects of past mining operations. A paleolimnological approach, using diatoms as environmental proxies, was used to evaluate the spatial and temporal impacts on aquatic receiving environments. Based on the inferences drawn from diatom assemblages in Lake Arnoux, prior to mining activity, lake water pH was similar to that of surrounding lakes (circumneutral to weakly acidic. After mining operations terminated, changes in pH and alkalinity in Lake Arnoux coincided with distinct increases in sediment sulphur content. Across a 30- to 40-year span (circa 1940 to 1970s a significant decline in phytoplankton flora coincided with lake acidification and increased clarity of the water column. This resulted in an increase in the benthic diatom population (>90%, replacing the planktonic diatoms. Observed shifts in environmental proxies are concurrent with one, and possibly two, reported tailings pond breaches at the abandoned mine site. Adverse effects of the abandoned Aldermac mine on nearby ecosystems, combined with pressure from local citizens and environmental groups, forced responsible accountability for site restoration led by the Quebec government. Based on the historical period of economic growth, the financial benefits of the Aldermac mine were significant and justify the current pay-it-backward costs for environmental remediation. However, it has now been documented that the pay-it-backward model is not sustainable in

  15. Oligocene age of the classic Belén fruit and seed assemblage of north coastal Peru based on diatom biostratigraphy

    Science.gov (United States)

    Manchester, Steven R.; Herrera, Fabiany; Fourtainer, Elisabeth; Barron, John A.; Martinez, Jean-Noël

    2012-01-01

    The Belén flora, in north coastal Peru, is the most diverse fruit and seed assemblage known from the Paleogene of South America. Almost no original paleobotanical work has been done on this assemblage since the pioneering treatments published by E.W. Berry, in the 1920’s and the precise age has not been settled. Nevertheless, the flora has been regarded as an important focal point in understanding the vegetational, orogenic and climatic history of northern South America, and in recent literature has been assumed to be early Eocene. In order to tighten the age assignment, which has varied from early Eocene to early Oligocene in the opinions of different authors, we revisited the Belén site, measured the stratigraphic section, and processed the fruit and seed-containing sediment for age-diagnostic microfossils. Although pollen and foraminifera were not recovered, the sediment is rich in diatoms. The diatom assemblage includes Lisitzinia ornata and Rocella vigilans among others, indicating a latest early Oligocene age (~30-28.5 Ma) for these deeper marine sediments that we infer to have been subsequently reworked into the Belén environment . This association leads us to consider the Belén flora, to be late Oligocene in age as is also consistent with its placement in the Mancora Formation. We also reevaluate the botanical identifications, based on the original museum specimens supplemented by more recently collected specimens. The Belén flora provides a window to extinct forests in South America before the rising of the Andes in western Peru.

  16. Assessing effects of water abstraction on fish assemblages in Mediterranean streams

    Science.gov (United States)

    Benejam, Lluis; Angermeier, Paul L.; Munne, Antoni; García-Berthou, Emili

    2010-01-01

    1. Water abstraction strongly affects streams in arid and semiarid ecosystems, particularly where there is a Mediterranean climate. Excessive abstraction reduces the availability of water for human uses downstream and impairs the capacity of streams to support native biota. 2. We investigated the flow regime and related variables in six river basins of the Iberian Peninsula and show that they have been strongly altered, with declining flows (autoregressive models) and groundwater levels during the 20th century. These streams had lower flows and more frequent droughts than predicted by the official hydrological model used in this region. Three of these rivers were sometimes dry, whereas there were predicted by the model to be permanently flowing. Meanwhile, there has been no decrease in annual precipitation. 3. We also investigated the fish assemblage of a stream in one of these river basins (Tordera) for 6 years and show that sites more affected by water abstraction display significant differences in four fish metrics (catch per unit effort, number of benthic species, number of intolerant species and proportional abundance of intolerant individuals) commonly used to assess the biotic condition of streams. 4. We discuss the utility of these metrics in assessing impacts of water abstraction and point out the need for detailed characterisation of the natural flow regime (and hence drought events) prior to the application of biotic indices in streams severely affected by water abstraction. In particular, in cases of artificially dry streams, it is more appropriate for regulatory agencies to assign index scores that reflect biotic degradation than to assign ‘missing’ scores, as is presently customary in assessments of Iberian streams.

  17. Aulacoseira kruegeriana (Bacillariophyta, Coscinodiscophyceae): a new centric diatom from high-elevation Andean streams of Bolivia

    Czech Academy of Sciences Publication Activity Database

    Morales, E. A.; Rivera, S. F.; Rubin, S. D. C.; Vis, M. L.; Houk, Václav

    2015-01-01

    Roč. 30, č. 3 (2015), s. 269-277 ISSN 0269-249X Institutional support: RVO:67985939 Keywords : centric diatoms * taxonomy * valve ultrastructure Subject RIV: EF - Botanics Impact factor: 1.868, year: 2015

  18. Fish assemblages in stream stretches occupied by cattail (Typhaceae, Angiospermae stands in Southeast Brazil

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    Fabíola Carla da Rocha

    Full Text Available Macrophytes are a major component of lentic and lotic aquatic ecosystems. As consequences of environmental degradation, species of cattail (genus Typha may become dominant along streams. The purpose of this study was to investigate the structure and feeding of fish assemblages in stream stretches under influence of Typha sp., also addressing the influences of temporal variation on composition, abundance, biomass, diversity, species richness, and feeding of fish. Six streams (labelled S1-S6 in the upper rio Turvo basin, southeast Brazil, with dense stands of Typha sp. in the instream and riparian habitat, were studied in six campaigns during three central months in both of the dry and wet periods, by using a standardized collection effort. Thirty-seven fish species were registered, totaling 4,228 individuals and 3.9 kg of biomass. Abundance, biomass, diversity, and species richness was higher in the wet period, but only the temporal variation in the species richness revealed to be statistically significant. Cluster analyses with composition and abundance showed little temporal similarity, but indicated two groups of streams (S1-S2-S5 and S3-S4-S6, that were corroborated along the axis 1 of the ordination analysis. Resident species was represented by six species, most of them considered tolerant and generalists. Chironomidae aquatic larvae and detritus were the most important items in the fish diet. These results suggest that the fish populations are opportunistic in exploring stream stretches occupied by cattail.

  19. Leaf litter processing and invertebrate assemblages along a pollution gradient in a Maine (USA) headwater stream

    International Nuclear Information System (INIS)

    Woodcock, Thomas S.; Huryn, Alexander D.

    2005-01-01

    During the autumn of 1997 and 1998, leaf litter processing rates and leaf pack invertebrate assemblages were examined at eight stations along a pollution gradient in Goosefare Brook, a first-order coastal plain stream in southern Maine (USA). There was no significant effect on litter softening rate in 1997, and only the most polluted station showed a decrease in 1998. However, litter loss rates showed decreases in both years. The structure of invertebrate assemblages changed in response to the stresses, showing a decline in EPT richness and an increase in the proportion of collecting taxa. However, total shredder biomass was only weakly affected. Shredder biomass at all stations was dominated by Tipula, and biomass of other shredder taxa showed a serial replacement along the gradient of stress related to their pollution tolerance. Rather than the expected relationship with shredder biomass, litter processing rates were directly related to water and sediment quality. Goosefare Brook demonstrates how variable pollution tolerance of community members enables stress resistance and a consequent preservation of ecosystem function. - Variable pollution tolerance of community members provides stress resistance at the ecosystem level in streams

  20. Holocene sea-level changes in King George Island, West Antarctica, by virtue of geomorphological coastal evidences and diatom assemblages of sediment sections.

    Science.gov (United States)

    Poleshchuk, Ksenia; Verkulich, Sergey; Pushina, Zina; Jozhikov, Ilya

    2015-04-01

    A new curve of relative sea-level change is presented for the Fildes peninsula, King George Island, West Antarctic. This work is based on renewed paleogeography data, including coastal geomorphological evidence, diatom assemblages of lakes bottom sediments and radiocarbon datings of organics. The new data were obtained in several sections of quaternary sediments and groups of terraces, and allows us to expand and improve relevant conception about relative sea level changes in the King George Island region. The new radiocarbon datings of organics (mosses and shells) allows reconstructing Holocene conditions that maintain and cause the sea-level changes. Sea diatom assemblages of Dlinnoye lake bottom sediment core (that complies period about 8000 years B.P.) mark altitude of marine water penetrated into the lake. The altitudes of shell remains, which have certain life habits and expect specific salinity and depth conditions, coupled with their absolute datings, indicate the probable elevation of the past sea level. The Mid-Holocene marine transgression reached its maximum level of 18-20 m by 5760 years B.P. The transgression influenced the deglaciation of the Fildes peninsula and environment conditions integrally. The ratio of glacio-isostatic adjustment velocity and Holocene transgression leaded to the decrease of relative sea level during the Late Holocene excluding the short period of rising between 2000 and 1300 years B.P. Comparing this data with the curve for Bunger oasis, East Antarctica, introduced earlier gives an interesting result. Despite the maximum altitudes of relative sea-level rise in King George region were higher and occurred later than in Bunger oasis region, the short-term period of Late Holocene sea-level rising contemporizes. Besides that, this work allow to realize a correlation between regions of Antarctica and adjacent territory. That, in turn, lets answer the question of tectonic and eustatic factors ratio and their contribution to the

  1. The diversity of diatom assemblages developed on fallow soil in Pogórska Wola near Tarnów (southern Poland

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    Jadwiga Stanek-Tarkowska

    2015-03-01

    Full Text Available The aim of this work was to investigate the species diversity of diatoms growing on fallow fields on loose sand. The study site was located in the western part of Pogórska Wola near Tarnów (southern Poland. Samples were collected from fallow land once a month from April to December 2011. 57 diatom taxa from 19 different genera were found. The most numerous genera were Fragilaria (8 and Luticola (7. The highest species richness was observed in December, November and July, while the highest values of species diversity (Shannon–Wiener index were recorded between August and October. Four taxa – Pinnularia borealis Ehrenb. var. borealis, Stauroneis borrichii (Petersen Lund, Hantzschia amphioxys (Ehrenb. Grunow, and Luticola nivalis (Ehrenb. D.G. Mann, were found to be the dominant species. Neutral species (a pH of about 7 dominated in all months (from April to December, reaching an over 90% share in the assemblage. In terms of nitrogen content, nitrogen-autotrophic taxa, tolerating an elevated concentration of organically bound nitrogen, occurred most abundantly, as was indicated by the low content of nitrogen in the soil.

  2. Longitudinal habitat disruption in Neotropical streams: fish assemblages under the influence of culverts

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    José Roberto Mariano

    Full Text Available This study assessed differences in fish assemblages existing upstream and downstream two types of culverts, one on each of two different Neotropical streams. We analyzed the composition and structure of the ichthyofauna and tested for spatial patterns. Fish sampling was carried out monthly between November 2009 and October 2010 using different fishing gears. We collected 2,220 fish of 33 species; 901 in stretches of the Lopeí stream - circular culvert and 1,310 in stretches of the Pindorama stream - box culvert. Fish abundance was similar in upstream and downstream stretches of the circular culvert, whereas it was slightly higher in the upstream than downstream stretch for the box culvert. Characiformes predominated in the upstream stretch of both culverts. On the other hand, Siluriformes was abundant in the downstream stretch of the circular culvert, with similar abundance in the stretches of the box culvert. Species richness and diversity (Shannon-Weiner Index were higher in the downstream stretch of the circular culvert, but they were similar in both stretches of the box culvert. The most abundant species were Astyanax altiparanae, A. paranae, A. fasciatus, Ancistrus sp., and Hypostomus sp. The last two species were more abundant in the downstream stretch of the circular culvert, and similar in stretches of the box culvert. Our study indicated variations in the species abundance, richness, and diversity between upstream and downstream stretches in particular of the circular culvert in the Lopeí stream, suggesting that fish movements are restrained more intensively in this culvert, especially for Siluriformes. The drop in the circular culvert outlet probably created passage barriers especially for those fish that has no ability to jump, where downstream erosion could lead to culvert perching. Studies on appropriate road crossing design or installation are fundamental whereas improvements in these structures can restore the connectivity of

  3. Preponderance of a few diatom species among the highly diverse microphytoplankton assemblages in the Bay of Bengal

    Digital Repository Service at National Institute of Oceanography (India)

    Paul, J.T.; Ramaiah, N.; Gauns, M.; Fernandes, V.

    The microphytoplankton assemblages were studied from water samples collected at eight discrete depths in the top 120 m at five central [open ocean] and four western [shelf/slope region] locations in the Bay of Bengal. The Bay is a low...

  4. High-resolution paleoclimatology of the Santa Barbara Basin during the Medieval Climate Anomaly and early Little Ice Age based on diatom and silicoflagellate assemblages in Kasten core SPR0901-02KC

    Science.gov (United States)

    Barron, John A.; Bukry, David B.; Hendy, Ingrid L.

    2015-01-01

    Diatom and silicoflagellate assemblages documented in a high-resolution time series spanning 800 to 1600 AD in varved sediment recovered in Kasten core SPR0901-02KC (34°16.845’ N, 120°02.332’ W, water depth 588 m) from the Santa Barbara Basin (SBB) reveal that SBB surface water conditions during the Medieval Climate Anomaly (MCA) and the early part of the Little Ice Age (LIA) were not extreme by modern standards, mostly falling within one standard deviation of mean conditions during the pre anthropogenic interval of 1748 to 1900. No clear differences between the character of MCA and the early LIA conditions are apparent. During intervals of extreme droughts identified by terrigenous proxy scanning XRF analyses, diatom and silicoflagellate proxies for coastal upwelling typically exceed one standard deviation above mean values for 1748-1900, supporting the hypothesis that droughts in southern California are associated with cooler (or La Niña-like) sea surface temperatures (SSTs). Increased percentages of diatoms transported downslope generally coincide with intervals of increased siliciclastic flux to the SBB identified by scanning XRF analyses. Diatom assemblages suggest only two intervals of the MCA (at ~897 to 922 and ~1151 to 1167) when proxy SSTs exceeded one standard deviation above mean values for 1748 to 1900. Conversely, silicoflagellates imply extreme warm water events only at ~830 to 860 (early MCA) and ~1360 to 1370 (early LIA) that are not supported by the diatom data. Silicoflagellates appear to be more suitable for characterizing average climate during the 5 to 11 year-long sample intervals studied in the SPR0901-02KC core than diatoms, probably because diatom relative abundances may be dominated by seasonal blooms of a particular year.

  5. Understanding the effects of predictability, duration, and spatial pattern of drying on benthic invertebrate assemblages in two contrasting intermittent streams

    Science.gov (United States)

    von Schiller, Daniel; Barberá, Gonzalo G.; Díaz, Angela M.; Arce, Maria Isabel; del Campo, Rubén; Tockner, Klement

    2018-01-01

    In the present study, we examined the effects of different drying conditions on the composition, structure and function of benthic invertebrate assemblages. We approached this objective by comparing invertebrate assemblages in perennial and intermittent sites along two intermittent Mediterranean streams with contrasting predictability, duration, and spatial patterns of drying: Fuirosos (high predictability, short duration, downstream drying pattern) and Rogativa (low predictability, long duration, patchy drying pattern). Specifically, we quantified the contribution of individual taxa to those differences, the degree of nestedness, and shifts in the composition, structure and function of benthic invertebrate assemblages along flow intermittence gradients. We observed greater effects of drying on the benthic invertebrate composition in Fuirosos than in Rogativa, resulting in a higher dissimilarity of assemblages between perennial and intermittent sites, as well as a lower degree of nestedness. Furthermore, a higher number of biotic metrics related to richness, abundance and biological traits were significantly different between perennial and intermittent sites in Fuirosos, despite a shorter dry period compared to Rogativa. At the same time, slightly different responses were detected during post-drying (autumn) than pre-drying (spring) conditions in this stream. In Rogativa, shifts in benthic invertebrate assemblages along increasing gradients of flow intermittence were found for three metrics (Ephemeroptera, Plecoptera and Trichoptera (EPT) and Odonata, Coleoptera and Heteroptera (OCH) abundances and aerial active dispersal. Furthermore, we demonstrated that combined gradients of dry period duration and distance to nearest perennial reach can generate complex, and different, responses of benthic invertebrate assemblages, depending on the flow intermittence metric. Our study advances the notion that special attention should be paid to the predictability, duration and

  6. Modeled hydrologic metrics show links between hydrology and the functional composition of stream assemblages.

    Science.gov (United States)

    Patrick, Christopher J; Yuan, Lester L

    2017-07-01

    Flow alteration is widespread in streams, but current understanding of the effects of differences in flow characteristics on stream biological communities is incomplete. We tested hypotheses about the effect of variation in hydrology on stream communities by using generalized additive models to relate watershed information to the values of different flow metrics at gauged sites. Flow models accounted for 54-80% of the spatial variation in flow metric values among gauged sites. We then used these models to predict flow metrics in 842 ungauged stream sites in the mid-Atlantic United States that were sampled for fish, macroinvertebrates, and environmental covariates. Fish and macroinvertebrate assemblages were characterized in terms of a suite of metrics that quantified aspects of community composition, diversity, and functional traits that were expected to be associated with differences in flow characteristics. We related modeled flow metrics to biological metrics in a series of stressor-response models. Our analyses identified both drying and base flow instability as explaining 30-50% of the observed variability in fish and invertebrate community composition. Variations in community composition were related to variations in the prevalence of dispersal traits in invertebrates and trophic guilds in fish. The results demonstrate that we can use statistical models to predict hydrologic conditions at bioassessment sites, which, in turn, we can use to estimate relationships between flow conditions and biological characteristics. This analysis provides an approach to quantify the effects of spatial variation in flow metrics using readily available biomonitoring data. © 2017 by the Ecological Society of America.

  7. Effects of sea lamprey substrate modification and carcass nutrients on macroinvertebrate assemblages in a small Atlantic coastal stream

    Science.gov (United States)

    Weaver, Daniel M.; Coghlan, Stephen M.; Zydlewski, Joseph D.

    2018-01-01

    Aquatic macroinvertebrates respond to patch dynamics arising from interactions of physical and chemical disturbances across space and time. Anadromous fish, such as sea lamprey, Petromyzon marinus, migrate from the ocean and alter physical and chemical properties of recipient spawning streams. Sea lamprey disturb stream benthos physically through nest construction and spawning, and enrich food webs through nutrient deposition from decomposing carcasses. Sea lamprey spawning nests support greater macroinvertebrate abundance than adjacent reference areas, but concurrent effects of stream bed modification and nutrient supplementation have not been examined sequentially. We added carcasses and cleared substrate experimentally to mimic the physical disturbance and nutrient enrichment associated with lamprey spawning, and characterized effects on macroinvertebrate assemblage structure. We found that areas receiving cleared substrate and carcass nutrients were colonized largely by Simuliidae compared to upstream and downstream control areas that were colonized largely by Hydropsychidae, Philopotamidae, and Chironomidae. Environmental factors such as stream flow likely shape assemblages by physically constraining macroinvertebrate establishment and feeding. Our results indicate potential changes in macroinvertebrate assemblages from the physical and chemical changes to streams brought by spawning populations of sea lamprey.

  8. Links between riparian landcover, instream environment and fish assemblages in headwater streams of south-eastern Brazil

    Science.gov (United States)

    Cruz, Bruna B.; Miranda, Leandro E.; Cetra, Mauricio

    2013-01-01

    We hypothesised and tested a hierarchical organisation model where riparian landcover would influence bank composition and light availability, which in turn would influence instream environments and control fish assemblages. The study was conducted during the dry season in 11 headwater tributaries of the Sorocaba River in the upper Paraná River Basin, south-eastern Brazil. We focused on seven environmental factors each represented by one or multiple environmental variables and seven fish functional traits each represented by two or more classes. Multivariate direct gradient analyses suggested that riparian zone landcover can be considered a higher level causal factor in a network of relations that control instream characteristics and fish assemblages. Our results provide a framework for a hierarchical conceptual model that identifies singular and collective influences of variables from different scales on each other and ultimately on different aspects related to stream fish functional composition. This conceptual model is focused on the relationships between riparian landcover and instream variables as causal factors on the organisation of stream fish assemblages. Our results can also be viewed as a model for headwater stream management in that landcover can be manipulated to influence factors such as bank composition, substrates and water quality, whereas fish assemblage composition can be used as indicators to monitor the success of such efforts.

  9. Potential population and assemblage influences of non-native trout on native nongame fish in Nebraska headwater streams

    Science.gov (United States)

    Turek, Kelly C.; Pegg, Mark A.; Pope, Kevin L.; Schainost, Steve

    2014-01-01

    Non-native trout are currently stocked to support recreational fisheries in headwater streams throughout Nebraska. The influence of non-native trout introductions on native fish populations and their role in structuring fish assemblages in these systems is unknown. The objectives of this study were to determine (i) if the size structure or relative abundance of native fish differs in the presence and absence of non-native trout, (ii) if native fish-assemblage structure differs in the presence and absence of non-native trout and (iii) if native fish-assemblage structure differs across a gradient in abundances of non-native trout. Longnose dace Rhinichthys cataractae were larger in the presence of brown trout Salmo trutta and smaller in the presence of rainbow trout Oncorhynchus mykiss compared to sites without trout. There was also a greater proportion of larger white suckers Catostomus commersonii in the presence of brown trout. Creek chub Semotilus atromaculatus and fathead minnow Pimephales promelas size structures were similar in the presence and absence of trout. Relative abundances of longnose dace, white sucker, creek chub and fathead minnow were similar in the presence and absence of trout, but there was greater distinction in native fish-assemblage structure between sites with trout compared to sites without trout as trout abundances increased. These results suggest increased risk to native fish assemblages in sites with high abundances of trout. However, more research is needed to determine the role of non-native trout in structuring native fish assemblages in streams, and the mechanisms through which introduced trout may influence native fish populations.

  10. Effect of the riparian vegetation removal on the trophic network of Neotropical stream fish assemblage

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    Pedro Sartori Manoel

    2018-02-01

    Full Text Available The study of the diet of fish is an important tool to assess different levels of environmental degradation, since the availability of food in the environment is a key factor for the fish occurrence. The removal of riparian vegetation usually degrades environmental quality, as this vegetation has an important role in providing energy to the ecosystem. This study investigates the effects of the removal of riparian vegetation on the fish assemblage trophic network. The study was carried out in two stretches of a southeastern Brazilian stream, one in a forest fragment and another in a pasture, during the wet and dry seasons of 2014. We analyzed the items consumed by each fish species using the frequency of occurrence and area of each item, which were combined to calculate the alimentary index, which was used to determine the food niche overlap of the fish and the specialization index of the trophic network. Aquatic Hexapoda, vegetal debris and organic matter dominated the trophic network of the two stretches. We detected higher values of food niche overlap in the forested stretch and more complex trophic networks in the pasture stretch. We found few seasonal variations in the items consumed and calculated indices in both stretches studied. The presence of grass on the banks in the pasture stretch and the importation of food resources from the upstream area may have provided a higher diversity of resources and consequently showed a more complex trophic network when compared to the forested stretch.

  11. Macroinvertebrate assemblages in agricultural, mining, and urban tropical streams: implications for conservation and management.

    Science.gov (United States)

    Mwedzi, Tongayi; Bere, Taurai; Mangadze, Tinotenda

    2016-06-01

    The study evaluated the response of macroinvertebrate assemblages to changes in water quality in different land-use settings in Manyame catchment, Zimbabwe. Four land-use categories were identified: forested commercial farming, communal farming, Great Dyke mining (GDM) and urban areas. Macroinvertebrate community structure and physicochemical variables data were collected in two seasons from 41 sites following standard methods. Although not environmentally threatening, urban and GDM areas were characterised by higher conductivity, total dissolved solids, salinity, magnesium and hardness. Chlorides, total phosphates, total nitrogen, calcium, potassium and sodium were significantly highest in urban sites whilst dissolved oxygen (DO) was significantly higher in the forested commercial faming and GDM sites. Macroinvertebrate communities followed the observed changes in water quality. Macroinvertebrates in urban sites indicated severe pollution (e.g. Chironomidae) whilst those in forested commercial farming sites and GDM sites indicated relatively clean water (e.g. Notonemouridae). Forested watersheds together with good farm management practices are important in mitigating impacts of urbanisation and agriculture. Strategies that reduce oxygen-depleting substances must be devised to protect the health of Zimbabwean streams. The study affirms the wider applicability of the South African Scoring System in different land uses.

  12. Predictive models for fish assemblages in eastern USA streams: implications for assessing biodiversity

    Science.gov (United States)

    Meador, Michael R.; Carlisle, Daren M.

    2009-01-01

    Management and conservation of aquatic systems require the ability to assess biological conditions and identify changes in biodiversity. Predictive models for fish assemblages were constructed to assess biological condition and changes in biodiversity for streams sampled in the eastern United States as part of the U.S. Geological Survey's National Water Quality Assessment Program. Separate predictive models were developed for northern and southern regions. Reference sites were designated using land cover and local professional judgment. Taxonomic completeness was quantified based on the ratio of the number of observed native fish species expected to occur to the number of expected native fish species. Models for both regions accurately predicted fish species composition at reference sites with relatively high precision and low bias. In general, species that occurred less frequently than expected (decreasers) tended to prefer riffle areas and larger substrates, such as gravel and cobble, whereas increaser species (occurring more frequently than expected) tended to prefer pools, backwater areas, and vegetated and sand substrates. In the north, the percentage of species identified as increasers and the percentage identified as decreasers were equal, whereas in the south nearly two-thirds of the species examined were identified as decreasers. Predictive models of fish species can provide a standardized indicator for consistent assessments of biological condition at varying spatial scales and critical information for an improved understanding of fish species that are potentially at risk of loss with changing water quality conditions.

  13. Relationships between indicators of acid-base chemistry and fish assemblages in streams of the Great Smoky Mountains National Park

    Science.gov (United States)

    Baldigo, Barry P.; Kulp, Matt A.; Schwartz, John S.

    2018-01-01

    The acidity of many streams in the Great Smoky Mountains National Park (GRSM) has increased significantly since pre-industrial (∼1850) times due to the effects of highly acidic atmospheric deposition in poorly buffered watersheds. Extensive stream-monitoring programs since 1993 have shown that fish and macroinvertebrate assemblages have been adversely affected in many streams across the GRSM. Matching chemistry and fishery information collected from 389 surveys performed at 52 stream sites over a 22-year period were assessed using logistic regression analysis to help inform the U.S. Environmental Protection Agency’s assessment of the environmental impacts of emissions of oxides of nitrogen (NOx) and sulfur (SOx). Numerous logistic equations and associated curves were derived that defined the relations between acid neutralizing capacity (ANC) or pH and different levels of community richness, density, and biomass; and density and biomass of brook trout, rainbow trout, and small prey (minnow) populations in streams of the GRSM. The equations and curves describe the status of fish assemblages in the GRSM under contemporary emission levels and deposition loads of nitrogen (N) and sulfur (S) and provide a means to estimate how newly proposed (and various alternative) target deposition loads, which strongly influence stream ANC, might affect key ecological indicators. Several examples using ANC, community richness, and brook trout density are presented to illustrate the steps needed to predict how future changes in stream chemistry (resulting from different target deposition loads of N and S) will affect the probabilities of observing specific levels of selected biological indicators in GRSM streams. The implications of this study to the regulation of NOx and SOx emissions, water quality, and fisheries management in streams of the GRSM are discussed, but also qualified by the fact that specific examples provided need to be further explored before recommendations

  14. Relationships of sedimentation and benthic macroinvertebrate assemblages in headwater streams using systematic longitudinal sampling at the reach scale.

    Science.gov (United States)

    Longing, S D; Voshell, J R; Dolloff, C A; Roghair, C N

    2010-02-01

    Investigating relationships of benthic invertebrates and sedimentation is challenging because fine sediments act as both natural habitat and potential pollutant at excessive levels. Determining benthic invertebrate sensitivity to sedimentation in forested headwater streams comprised of extreme spatial heterogeneity is even more challenging, especially when associated with a background of historical and intense watershed disturbances that contributed unknown amounts of fine sediments to stream channels. This scenario exists in the Chattahoochee National Forest where such historical timber harvests and contemporary land-uses associated with recreation have potentially affected the biological integrity of headwater streams. In this study, we investigated relationships of sedimentation and the macroinvertebrate assemblages among 14 headwater streams in the forest by assigning 30, 100-m reaches to low, medium, or high sedimentation categories. Only one of 17 assemblage metrics (percent clingers) varied significantly across these categories. This finding has important implications for biological assessments by showing streams impaired physically by sedimentation may not be impaired biologically, at least using traditional approaches. A subsequent multivariate cluster analysis and indicator species analysis were used to further investigate biological patterns independent of sedimentation categories. Evaluating the distribution of sedimentation categories among biological reach clusters showed both within-stream variability in reach-scale sedimentation and sedimentation categories generally variable within clusters, reflecting the overall physical heterogeneity of these headwater environments. Furthermore, relationships of individual sedimentation variables and metrics across the biological cluster groups were weak, suggesting these measures of sedimentation are poor predictors of macroinvertebrate assemblage structure when using a systematic longitudinal sampling design

  15. Compliance of secondary production and eco-exergy as indicators of benthic macroinvertebrates assemblages' response to canopy cover conditions in Neotropical headwater streams.

    Science.gov (United States)

    Linares, Marden Seabra; Callisto, Marcos; Marques, João Carlos

    2018-02-01

    Riparian vegetation cover influences benthic assemblages structure and functioning in headwater streams, as it regulates light availability and autochthonous primary production in these ecosystems.Secondary production, diversity, and exergy-based indicators were applied in capturing how riparian cover influences the structure and functioning of benthic macroinvertebrate assemblages in tropical headwater streams. Four hypotheses were tested: (1) open canopy will determine the occurrence of higher diversity in benthic macroinvertebrate assemblages; (2) streams with open canopy will exhibit more complex benthic macroinvertebrate communities (in terms of information embedded in the organisms' biomass); (3) in streams with open canopy benthic macroinvertebrate assemblages will be more efficient in using the available resources to build structure, which will be reflected by higher eco-exergy values; (4) benthic assemblages in streams with open canopy will exhibit more secondary productivity. We selected eight non-impacted headwater streams, four shaded and four with open canopy, all located in the Neotropical savannah (Cerrado) of southeastern Brazil. Open canopy streams consistently exhibited significantly higher eco-exergy and instant secondary production values, exemplifying that these streams may support more complex and productive benthic macroinvertebrate assemblages. Nevertheless, diversity indices and specific eco-exergy were not significantly different in shaded and open canopy streams. Since all the studied streams were selected for being considered as non-impacted, this suggests that the potential represented by more available food resources was not used to build a more complex dissipative structure. These results illustrate the role and importance of the canopy cover characteristics on the structure and functioning of benthic macroinvertebrate assemblages in tropical headwater streams, while autochthonous production appears to play a crucial role as food

  16. Influence of habitat and land use on the assemblages of ephemeroptera, plecoptera, and trichoptera in neotropical streams.

    Science.gov (United States)

    Amaral, Pedro Henrique Monteiro do; Silveira, Lidimara Souza da; Rosa, Beatriz Figueiraujo Jabour Vescovi; Oliveira, Vívian Campos de; Alves, Roberto da Gama

    2015-01-01

    Insects of the orders Ephemeroptera, Plecoptera, and Trichoptera (EPT) are often used to assess the conditions of aquatic environments, but few studies have examined the differences in these communities between riffles and pools. Our objective was to test whether riffles shelter greater richness and abundance of EPT, as well as to assess the sensitivity of these insects for detecting impacts from different land uses in streams in southeastern Brazil. Samples were collected in the dry season of 2012 with a Surber sampler in riffles and pools of nine streams (forest, pasture, and urban areas). Principal component analysis distinguished the streams according to different land uses as a function of percentage of plant cover and water oxygenation level and showed partial distinction between riffles and pools as a function of current speed and percentage of ultrafine sand. Detrended correspondence analysis indicated the distinction in EPT composition between riffles and pools, except in urban streams. The results of this study confirm the expected differences in the EPT fauna structure between riffles and pools, especially in forest and pasture environments. The individual metrics of riffle and pool assemblages showed significantly different responses to land use. Therefore, we suggest individual sampling of riffles and pools, since the metrics of these assemblages' insects can differ between these habitats and influence the results of assessments in low-order streams. © The Author 2015. Published by Oxford University Press on behalf of the Entomological Society of America.

  17. APPLICATION OF DIATOMS TO ASSESS THE QUALITY OF THE WATERS OF THE BARYCZKA STREAM, LEFT-SIDE TRIBUTARY OF THE RIVER SAN

    Directory of Open Access Journals (Sweden)

    Teresa Noga

    2013-07-01

    Full Text Available The Baryczka stream is a small (about 20 km long, left bank tributary of the River San (Podkarpackie Voivodeship. Studies on diversity of diatom communities using OMNIDIA software were conducted in 2010 and 2011. Diatomaceous indices IPS, GDI and TDI and Van Dam et al. classification system were used for water quality assessment. Planothidium lanceolatum, Cocconeis placentula var. lineata, Achnanthidium minutissimum var. minutissimum, Nitzschia linearis, Rhoicosphenia abbreviata, Navicula lanceolata and Naicula gregaria were the most numerous. Values of the IPS index indicate good water quality (II–III class. Based on the GDI index, waters of the Baryczka stream were classified to III class water quality. The TDI index indicated poor and bad ecological state on the most sampling sites. On all sampling sites alaliphilous (pH>7 diatoms taxa predominated. The most common were eutraphentic and hypereutraphentic diatoms. With respect to trophy, it was shown that α- and β-mesosaprobous diatoms were the most common (III and II class water quality.

  18. Effects of grade control structures on fish passage, biological assemblages, and hydraulic environments in western Iowa streams: a multidisciplinary review

    Science.gov (United States)

    Thomas, J.T.; Culler, M.E.; Dermisis, D.C.; Pierce, Clay; Papanicolaou, A.N.; Stewart, T.W.; Larson, C.J.

    2011-01-01

    Land use changes and channelization of streams in the deep loess region of western Iowa have led to stream channel incision, altered flow regimes, increased sediment inputs, decreased habitat diversity and reduced lateral connectivity of streams and floodplains. Grade control structures (GCSs) are built in streams to prevent further erosion, protect infrastructure and reduce sediment loads. However, GCS can have a detrimental impact on fisheries and biological communities. We review three complementary biological and hydraulic studies on the effects of GCS in these streams. GCS with steep (≥1:4 rise : run) downstream slopes severely limited fish passage, but GCS with gentle slopes (≤1:15) allowed greater passage. Fish assemblages were dominated by species tolerant of degradation, and Index of Biotic Integrity (IBI) scores were indicative of fair or poor biotic integrity. More than 50% of fish species had truncated distributions. After modification of GCS to reduce slopes and permit increased passage, IBI scores increased and several species were detected further upstream than before modification. Total macroinvertebrate density, biomass and taxonomic diversity and abundance of ecologically sensitive taxa were greater at GCS than in reaches immediately upstream, downstream or ≥1 km from GCS. A hydraulic study confirmed results from fish passage studies; minimum depths and maximum current velocities at GCS with gentle slopes (≤1:15) were more likely to meet minimum criteria for catfish passage than GCS with steeper slopes. Multidisciplinary approaches such as ours will increase understanding of GCS-associated factors influencing fish passage, biological assemblage structure and other ecological relationships in streams.

  19. Partitioning taxonomic diversity of aquatic insect assemblages and functional feeding groups in Neotropical Savanna headwater streams

    Science.gov (United States)

    Biological diversity can be divided into: alpha (α, local), beta (β, difference in assemblage composition among locals), and gamma (γ, total diversity). We assessed the partitioning of taxonomic diversity of Ephemeroptera, Plecoptera and Trichoptera (EPT) and of functional feedin...

  20. Using macroinvertebrate assemblages and multiple stressors to infer urban stream system condition: A case study in the central US

    Science.gov (United States)

    Nichols, John W.; Hubbart, Jason A.; Poulton, Barry C.

    2016-01-01

    Characterizing the impacts of hydrologic alterations, pollutants, and habitat degradation on macroinvertebrate species assemblages is of critical value for managers wishing to categorize stream ecosystem condition. A combination of approaches including trait-based metrics and traditional bioassessments provides greater information, particularly in anthropogenic stream ecosystems where traditional approaches can be confounded by variously interacting land use impacts. Macroinvertebrates were collected from two rural and three urban nested study sites in central Missouri, USA during the spring and fall seasons of 2011. Land use responses of conventional taxonomic and trait-based metrics were compared to streamflow indices, physical habitat metrics, and water quality indices. Results show that biotic index was significantly different (p habitats in urban reaches contained 21 % more (p = 0.03) multivoltine organisms, which was positively correlated to the magnitude of peak flows (r2 = 0.91, p = 0.012) suggesting that high flow events may serve as a disturbance in those areas. Results support the use of macroinvertebrate assemblages and multiple stressors to characterize urban stream system condition and highlight the need to better understand the complex interactions of trait-based metrics and anthropogenic aquatic ecosystem stressors.

  1. Composition and structure of fish assemblage from Passa Cinco stream, Corumbataí river sub-basin, SP, Brazil

    Directory of Open Access Journals (Sweden)

    AL Carmassi

    Full Text Available The aim of this work was to determine the composition of the fish assemblage of Passa Cinco stream and verify changes in their structure on the altitudinal gradient. Six samples were performed at five different sites in Passa Cinco stream (from the headwater, at order two, to its mouth, at order six, using an electric fishery equipment and gill nets in May, July, September and November of 2005 and January and March of 2006. The indices of Shannon's diversity, Pielou's evenness and Margalef's richness were quantified separately considering the different fishery equipment (nets versus electric fishery equipment. An ANOVA was used to compare samples collected in relation to values of abundance, diversity, evenness and richness. The representativeness of the species was summarised by their average values of abundance and weight. We captured 5082 individuals distributed into 61 species. We observed a trend of increasing diversity, richness and evenness of species from site 1 to 3, with further decrease in sites 4 and 5. The values found for habitat diversity also followed this pattern. Significant differences were found for all three indices considering the electric fishery samples. For individuals caught with nets, only the richness index showed a significant difference. Characidium aff. zebra was an important species in the headwater and transition sites and Hypostomus strigaticeps in middle-lower course sites. Despite the small extension of the Passa Cinco stream, environments structurally well defined were evidenced by the species distribution and assemblage composition along the gradient.

  2. Use of phosphorus to reduce blooms of the benthic diatom Didymosphenia geminata in an oligotrophic stream

    Science.gov (United States)

    James, Daniel A.; Bothwell, Max L.; Chipps, Steven R.; Carreiro, John

    2015-01-01

    Blooms of the benthic alga, Didymosphenia geminata [Lyngbye (Schmidt)], were first documented in Rapid Creek, South Dakota, in 2002 and have since been associated with changes to aquatic resources. Low concentration of P has been associated with D. geminata stalk development (i.e., blooms), so we considered elevating P as a possible method to reduce D. geminata blooms. We conducted 2 whole-stream P-enrichment experiments in Rapid Creek during 2007 and 2008. Enrichment with a slow-release fertilizer (Osmocote®: 14-14-14) in 2007 significantly reduced D. geminata blooms (indexed by D. geminata biomass) compared to upstream control sites. The reduction in biomass was less pronounced as distance from the enrichment source increased, a result indicating that P augmentation effectively decreased D. geminata biomass. In 2008, we implemented a before-after–control-impact (BACI) study to assess effects of a quick-release fertilizer (MAP: 11-52-0) on D. geminata biomass. The addition of 6 μg/L P to Rapid Creek resulted in a significant decrease in D. geminata biomass within 0.6 km downstream of the nutrient-addition point. Effects on D. geminata biomass were not evident further downstream. This study provides evidence to support the hypothesis that low P concentration regulates D. geminata blooms.

  3. Effects of agricultural and urban impacts on macroinvertebrates assemblages in streams (Rio Grande do Sul, Brazil

    Directory of Open Access Journals (Sweden)

    Luiz Ubiratan Hepp

    2010-02-01

    Full Text Available This study evaluates the effects of agricultural and urban activities on the structure and composition of benthic communities of streams in the state of Rio Grande do Sul, Brazil. Benthic macroinvertebrates were collected in streams influenced by urbanization and agriculture and in streams with no anthropogenic disturbances (reference streams. Organism density was superior in urban streams when compared with streams in the other two areas. The taxonomic richness and Shannon diversity index were higher in reference streams. The benthic fauna composition was significantly different among land uses. The classification and ordination analyses corroborated the results of variance analyses demonstrating the formation of clusters corresponding to streams with similar land use. Seasonality was also found to influence the benthic community, though in a lesser degree than land use.

  4. Identifying community thresholds for lotic benthic diatoms in response to human disturbance.

    Science.gov (United States)

    Tang, Tao; Tang, Ting; Tan, Lu; Gu, Yuan; Jiang, Wanxiang; Cai, Qinghua

    2017-06-23

    Although human disturbance indirectly influences lotic assemblages through modifying physical and chemical conditions, identifying thresholds of human disturbance would provide direct evidence for preventing anthropogenic degradation of biological conditions. In the present study, we used data obtained from tributaries of the Three Gorges Reservoir in China to detect effects of human disturbance on streams and to identify disturbance thresholds for benthic diatoms. Diatom species composition was significantly affected by three in-stream stressors including TP, TN and pH. Diatoms were also influenced by watershed % farmland and natural environmental variables. Considering three in-stream stressors, TP was positively influenced by % farmland and % impervious surface area (ISA). In contrast, TN and pH were principally affected by natural environmental variables. Among measured natural environmental variables, average annual air temperature, average annual precipitation, and topsoil % CaCO 3 , % gravel, and total exchangeable bases had significant effects on study streams. When effects of natural variables were accounted for, substantial compositional changes in diatoms occurred when farmland or ISA land use exceeded 25% or 0.3%, respectively. Our study demonstrated the rationale for identifying thresholds of human disturbance for lotic assemblages and addressed the importance of accounting for effects of natural factors for accurate disturbance thresholds.

  5. The Influence of Geology and Other Environmental Factors on Stream Water Chemistry and Benthic Invertebrate Assemblages

    OpenAIRE

    Olson, John R.

    2012-01-01

    Catchment geology is known to influence water chemistry, which can significantly affect both species composition and ecosystem processes in streams. However, current predictions of how stream water chemistry varies with geology are limited in both scope and precision, and we have not adequately tested the specific mechanisms by which water chemistry influences stream biota. My dissertation research goals were to (1) develop empirical models to predict natural base-flow water chemistry from ca...

  6. Structural and functional responses of the oligochaete and aeolosomatid assemblage in lowland streams: a one-way-pollution-modelled ecosystem

    Directory of Open Access Journals (Sweden)

    Maria V. López van Oosterom

    2015-03-01

    Full Text Available We investigated the responses of the assemblage of Oligochaeta and Aeolosomatidae to organic pollution; comparing taxonomic richness, diversity, abundance, and diet of the individuals inhabiting two lowland streams with different degrees of anthropic impact (the Rodríguez and the Carnaval belonging to the Río de la Plata basin, Argentina. The physicochemical parameters in the Rodríguez Stream indicated a strong deterioration of the water quality compared to that of the Carnaval. A canonical-correlation analysis indicated that the Tubificinae, Megadrili, Enchytraeidae, and Rhyacodrilinae were more closely associated with the Rodríguez Stream; whereas the Naidinae, Pristininae, and Opystocystidae were more highly represented in the Carnaval. The diversity and taxonomic richness in the Rodríguez Stream exhibited significant differences from those of the Carnaval (P<0.001, but the abundance was not different between the two sites. Schoener’s index revealed the higher degree of dietary overlap of the two streams because all the species analysed consumed a high proportion of detritus, especially the organisms in the Rodríguez. In the Carnaval Stream a higher number of alimentary items were consumed, and mainly by the Naidinae. This difference, probably reflecting the greater availability of this resource at sites impacted by organic pollution, underscores the fundamental role of oligochaetes in the food webs of aquatic ecosystems. The combined use of structural and functional parameters enables a more comprehensive view of how these lotic systems function and as such provides information that will serve to design tools for the management of such temperate environments.

  7. Patterns at Multi-Spatial Scales on Tropical Island Stream Insect Assemblages: Gorgona Island Natural National Park, Colombia, Tropical Eastern Pacific

    Directory of Open Access Journals (Sweden)

    Magnolia Longo

    2014-02-01

    Full Text Available Tropical Eastern Pacific island streams (TEPis differ from other neotropical streams in their rainy climate, mixed sedimentary-volcanic geology and faunal composition. Yet, their relationships between environmental characteristics and stream biota remain unexplored. We analyzed the environmental subject at three spatial scales using a fully nested sampling design (6 streams, 2 reaches within each stream, 2 habitats within each reach, and 4 replicates per habitat on Gorgona Island (Colombia. Sampling was carried out in two months with contrasting rainfall during early 2009. We studied the spatial variation of assemblage composition and density along with 27 independent variables within two contrasting rainfall conditions. Five stream-scale variables, two reach-scale variables, and five habitat-scale variables were selected using a Canonical Correspondence Analysis (CCA. A partial CCA showed that the total variance explained was 13.98%, while stream- and habitat-scale variables explained the highest proportion of the variance (5.74 and 5.01%, respectively. Dissolved oxygen (as affected by rainfall, high-density use zone (a management category, and sedimentary geology were the best descriptors of insect assemblages. The two latter descriptors affected fine-scale variables such as total benthic organic matter and gravel substratum, respectively. A Nested ANOVA showed significant differences in total density and richness among streams and habitats, and significant differences between the two sampling months regardless of the spatial scale. The evenness showed a significant stream- and habitat-dependent temporal variability. These results suggested that rainfall regime in Gorgona Island might be a driver of insect assemblage dynamics mediated by water chemistry and substratum properties. Spatial assemblage variability here is greater within habitats (among samples, and a minor fraction occurs at habitat- and stream-scales, while no longitudinal

  8. A multigear protocol for sampling crayfish assemblages in Gulf of Mexico coastal streams

    Science.gov (United States)

    William R. Budnick; William E. Kelso; Susan B. Adams; Michael D. Kaller

    2018-01-01

    Identifying an effective protocol for sampling crayfish in streams that vary in habitat and physical/chemical characteristics has proven problematic. We evaluated an active, combined-gear (backpack electrofishing and dipnetting) sampling protocol in 20 Coastal Plain streams in Louisiana. Using generalized linear models and rarefaction curves, we evaluated environmental...

  9. Streamflow characteristics and benthic invertebrate assemblages in streams across the western United States

    Science.gov (United States)

    Brasher, Anne M.D.; Konrad, Chris P.; May, Jason T.; Edmiston, C. Scott; Close, Rebecca N.

    2010-01-01

    Hydrographic characteristics of streamflow, such as high-flow pulses, base flow (background discharge between floods), extreme low flows, and floods, significantly influence aquatic organisms. Streamflow can be described in terms of magnitude, timing, duration, frequency, and variation (hydrologic regime). These characteristics have broad effects on ecosystem productivity, habitat structure, and ultimately on resident fish, invertebrate, and algae communities. Increasing human use of limited water resources has modified hydrologic regimes worldwide. Identifying the most ecologically significant hydrographic characteristics would facilitate the development of water-management strategies.Benthic invertebrates include insects, mollusks (snails and clams), worms, and crustaceans (shrimp) that live on the streambed. Invertebrates play an important role in the food web, consuming other invertebrates and algae and being consumed by fish and birds. Hydrologic alteration associated with land and water use can change the natural hydrologic regime and may affect benthic invertebrate assemblage composition and structure through changes in density of invertebrates or taxa richness (number of different species).This study examined associations between the hydrologic regime and characteristics of benthic invertebrate assemblages across the western United States and developed tools to identify streamflow characteristics that are likely to affect benthic invertebrate assemblages.

  10. Temporal variability in discharge and benthic macroinvertebrate assemblages in a tropical glacier-fed stream

    DEFF Research Database (Denmark)

    Jacobsen, Dean; Andino, Patricio; Calvez, Roger

    2014-01-01

    discharge parameters 3, 6, 9, 21, and 45 d before sampling. The effect of flow (slopes of regressions of faunal metrics vs flow) did not differ among sites, but the amount of variation explained by flow was significant only at the 2 downstream sites. Little synchrony was found in variability among sites......-fed stream, a prerequisite for subsequent predictions of consequences of tropical glacier melting on diversity, composition, and stability of stream communities....

  11. The structure and species richness of the diatom assemblages of the Western Carpathian spring fens along the gradient of mineral richness

    Czech Academy of Sciences Publication Activity Database

    Fránková, Markéta; Bojková, J.; Poulíčková, A.; Hájek, Michal

    2009-01-01

    Roč. 9, č. 2 (2009), s. 355-368 ISSN 1802-5439 Institutional research plan: CEZ:AV0Z60050516 Keywords : diatoms * Western Carpathians * poor-rich gradient Subject RIV: EF - Botanics Impact factor: 1.762, year: 2009

  12. SPATIO-TEMPORAL VARIATIONS IN MACROINVERTEBRATE ASSEMBLAGES OF NEW CALEDONIAN STREAMS.

    Directory of Open Access Journals (Sweden)

    MARY N. J.

    2002-01-01

    Full Text Available Forty-one sites located on 14 New Caledonian streams were surveyed four times between October 1996 and October 1997 in order to examine the spatial and temporal changes in the structure of the benthic macroinvertebrate communities. About 250 000 invertebrates representing 167 taxa were collected in the streams. Seventy-five percent of identified taxa and 67% of individuals were insects. Major spatial and temporal changes in the composition of the fauna were detected by multivariate analyses (ordination and classification. Overall, the number of individuals was significantly higher in the dry season (October than in the wetter seasons (January and June. However, a low temporal variability was detected in the structure of benthic communities during the sampling period. A cluster analysis based on taxonomic composition separated five groups of sites in relation with rock type, land use, and geographic characteristics. Several metrics (total invertebrate density, taxon richness, relative abundance of major invertebrate groups, diversity indices were used to characterize each group of sites. Forested streams, where the highest specific diversity occurred, represented the most speciose habitat for benthic fauna. A less rich and abundant fauna occurred in streams draining ultramafic rocks probably because of their low content in food resources and organic matter.

  13. Dynamics in species composition of stream fish assemblages: environmental variability and nested subsets

    Science.gov (United States)

    Christopher M. Taylor; Melvin L. Warren

    2001-01-01

    Stream landscapes are highly variable in space and time and, like terrestrial landscapes, the resources they contain are patchily distributed. Organisms may disperse among patches to fulfill life-history requirements, but biotic and abiotic factors may limit patch or locality occupancy. Thus, the dynamics of immigration and extinction determine, in part, the local...

  14. The influence of environmental variables on the functional structure of headwater stream fish assemblages: a study of two tropical basins in Central Brazil

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    Rodrigo Assis Carvalho

    Full Text Available We investigated functional patterns of fish assemblages of two adjacent basins (Araguaia and Tocantins to test whether their headwater stream fish assemblages are more functionally (dissimilar than expected by chance and whether these (dissimilarities are related to differences of environmental conditions between basins. We used an analysis of similarities (ANOSIM on a functional dissimilarity matrix to test for (dissimilarities between fish assemblages of both basins. We performed RLQ and fourth-corner analyses to determine fish species trait-environment relationship. Our results revealed functional dissimilarities between fish assemblages of both basins and significant species trait-environment relationships, suggesting that environmental conditions are driving such dissimilarities. Inter-basin dissimilarities are mainly driven by altitudinal and water temperature gradients, whereas dissimilarities among streams within the basins are influenced by channel depth, turbidity and conductivity. These five environmental variables mostly affected six fish species traits (body mass, water column position, substrate preference, parental care, foraging locality and migration in different manners. This study is an attempt to understand functional trends of fish assemblages in a tropical region that remains poorly known but severely threatened.

  15. Use of functional traits to assess changes in stream fish assemblages across a habitat gradient

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    Mariela Domiciano Ribeiro

    Full Text Available Abstract Functional traits are important for understanding the links between species occurrence and environmental conditions. Identifying these links makes it possible to predict changes in species composition within communities under specific environmental conditions. We used functional traits related to habitat use and trophic ecology in order to assess the changes in fish community composition between streams with varying habitat structure. The relationship between the species traits and habitat characteristics was analyzed using an RLQ ordination analysis. Although species were widely distributed in habitats with different structures, physical conditions did favor some species based on their functional characteristics. Eight functional traits were found to be associated with stream habitat structure, allowing us to identify traits that may predict the susceptibility of fish species to physical habitat degradation.

  16. Variable responses of fish assemblages, habitat, and stability to natural-channel-design restoration in Catskill Mountain streams

    Science.gov (United States)

    Baldigo, Barry P.; Ernst, Anne G.; Warren, Dana R.; Miller, Sarah J.

    2010-01-01

    Natural-channel-design (NCD) restorations were recently implemented within large segments of five first- and second-order streams in the Catskill Mountains of New York in an attempt to increase channel stability, reduce bed and bank erosion, and sustain water quality. In conjunction with these efforts, 54 fish and habitat surveys were done from 1999 to 2007 at six restored reaches and five stable control reaches to evaluate the effects of NCD restoration on fish assemblages, habitat, and bank stability. A before–after–control–impact study design and two-factor analysis of variance were used to quantify the net changes in habitat and fish population and community indices at treatment reaches relative to those at unaltered control reaches. The density and biomass of fish communities were often dominated by one or two small prey species and no or few predator species before restoration and by one or more trout (Salmonidae) species after restoration. Significant increases in community richness (30%), diversity (40%), species or biomass equitability (32%), and total biomass (up to 52%) in at least four of the six restored reaches demonstrate that NCD restorations can improve the health and sustainability of fish communities in geomorphically unstable Catskill Mountain streams over the short to marginally long term. Bank stability, stream habitat, and trout habitat suitability indices (HSIs) generally improved significantly at the restored reaches, but key habitat features and trout HSIs did not change or decreased at two of them. Fish communities and trout populations at these two reaches were not positively affected by NCD restorations. Though NCD restorations often had a positive effect on habitat and fish communities, our results show that the initial habitat conditions limit the relative improvements than can be achieved, habitat quality and stability do not necessarily respond in unison, and biotic and abiotic responses cannot always be generalized.

  17. Relationship between diatom communities and environmental ...

    African Journals Online (AJOL)

    ajl yemi

    2011-11-30

    Nov 30, 2011 ... The relationship between diatom species and measured environmental variables was explored at different sites of Honghe wetland region located in northeastern China. Planktonic and epiphytic diatom assemblages in the wetland were identified from May to October of 2007 and 2008. Their relationships.

  18. Relationship between diatom communities and environmental ...

    African Journals Online (AJOL)

    Abstract. The relationship between diatom species and measured environmental variables was explored at different sites of Honghe wetland region located in northeastern China. Planktonic and epiphytic diatom assemblages in the wetland were identified from May to October of 2007 and 2008. Their relationships with ...

  19. Long-term patterns of chironomid assemblages in a high elevation stream/lake network (Switzerland – Implications to global change

    Directory of Open Access Journals (Sweden)

    Brigitte Lods-Crozet

    2012-10-01

    Full Text Available A long-term monitoring program was initiated in 2002 on running and standing waters in a high elevation cirque landscape (Macun in the Swiss National Park. The region comprises contrasting basins with different water sources, a glacier-fed basin and two precipitation-fed basins. Sampling of 26 permanent and temporary ponds (or small lakes and of interconnecting streams (10 sites was conducted from 2002 to 2010. Pond macroinvertebrate assemblages were dominated by chironomids with 42 taxa. The Orthocladiinae were the dominant subfamily in richness and abundance with 22 taxa. The greatest diversity was found in ponds located in the south and outlet basins. The inter-year variability for the same pond is high, but no clear temporal trend was noticed in ponds frequently monitored ponds. The Orthocladiinae subfamily was also the richest in the stream sites where 33 taxa were collected. The north and south basins were separated on the basis of chironomid assemblages. The chironomid assemblages in the stream network shows a temporal trend from 2002 but it cannot be linked to any clear change at the community structure level. The higher richness and abundance in stream sites and ponds of the south basin could be related to a greater heterogeneity in water physico-chemistry and substrata, and by the presence of Bryophyta. The understanding of the environmental factors that influence faunal assemblages is crucial for the protection of this sensitive alpine pond network where a relatively high overall regional diversity (49 taxa is detected. From the literature, temperature is recognized as the driving force on changes in chironomid assemblages in alpine systems. Our results support the use of chironomids as flagship indicators in the assessment of climatic change in alpine landscapes.doi: 10.5324/fn.v31i0.1361.Published online: 17 October 2012.

  20. Colonization and extinction in dynamic habitats: an occupancy approach for a Great Plains stream fish assemblage.

    Science.gov (United States)

    Falke, Jeffrey A; Bailey, Larissa L; Fausch, Kurt D; Bestgen, Kevin R

    2012-04-01

    Despite the importance of habitat in determining species distribution and persistence, habitat dynamics are rarely modeled in studies of metapopulations. We used an integrated habitat-occupancy model to simultaneously quantify habitat change, site fidelity, and local colonization and extinction rates for larvae of a suite of Great Plains stream fishes in the Arikaree River, eastern Colorado, USA, across three years. Sites were located along a gradient of flow intermittency and groundwater connectivity. Hydrology varied across years: the first and third being relatively wet and the second dry. Despite hydrologic variation, our results indicated that site suitability was random from one year to the next. Occupancy probabilities were also independent of previous habitat and occupancy state for most species, indicating little site fidelity. Climate and groundwater connectivity were important drivers of local extinction and colonization, but the importance of groundwater differed between periods. Across species, site extinction probabilities were highest during the transition from wet to dry conditions (range: 0.52-0.98), and the effect of groundwater was apparent with higher extinction probabilities for sites not fed by groundwater. Colonization probabilities during this period were relatively low for both previously dry sites (range: 0.02-0.38) and previously wet sites (range: 0.02-0.43). In contrast, no sites dried or remained dry during the transition from dry to wet conditions, yielding lower but still substantial extinction probabilities (range: 0.16-0.63) and higher colonization probabilities (range: 0.06-0.86), with little difference among sites with and without groundwater. This approach of jointly modeling both habitat change and species occupancy will likely be useful to incorporate effects of dynamic habitat on metapopulation processes and to better inform appropriate conservation actions.

  1. A conceptual model for the blooming behavior and persistence of the benthic mat-forming diatom Didymosphenia geminata in oligotrophic streams

    Science.gov (United States)

    Cullis, James D. S.; Gillis, Carole-Anne; Bothwell, Max L.; Kilroy, Cathy; Packman, Aaron; Hassan, Marwan

    2012-06-01

    The benthic, mat-forming diatomDidymosphenia geminata has the unique ability to produce large amounts of algal biomass under oligotrophic conditions in cold, fast flowing streams and rivers. This presents an ecological paradox that challenges our current understanding of stream ecosystem dynamics. Our understanding of the drivers of D. geminata ecology is still limited. Here we present a conceptual model for the blooming behavior and persistence of this species to advance scientific understanding of strategies for life in fast flowing oligotrophic waters and support the design of future research and mitigation measures for nuisance algal blooms. The conceptual model is based on a synthesis of data and ideas from a range of disciplines including hydrology, geomorphology, biogeochemistry, and ecology. The conceptual model highlights the role of water chemistry, river morphology, and flow thresholds in defining the habitat window for D. geminata. We propose that bed disturbance is a primary control on accumulation and persistence of D. geminataand that the removal threshold can be determined by synthesizing site-specific information on hydrology and geomorphology. Further, we propose that a key to understanding the didymo paradox is the separation of cellular reproduction and mat morphology with specific controls acting in respect of the different processes.

  2. Evaluating habitat associations of a fish assemblage at multiple spatial scales in a minimally disturbed stream using low-cost remote sensing

    Science.gov (United States)

    Cheek, Brandon D.; Grabowski, Timothy B.; Bean, Preston T.; Groeschel, Jillian R.; Magnelia, Stephan J.

    2016-01-01

    Habitat heterogeneity at multiple scales is a major factor affecting fish assemblage structure. However, assessments that examine these relationships at multiple scales concurrently are lacking. The lack of assessments at these scales is a critical gap in understanding as conservation and restoration efforts typically work at these levels.A combination of low-cost side-scan sonar surveys, aerial imagery using an unmanned aerial vehicle, and fish collections were used to evaluate the relationship between physicochemical and landscape variables at various spatial scales (e.g. micro-mesohabitat, mesohabitat, channel unit, stream reach) and stream–fish assemblage structure and habitat associations in the South Llano River, a spring-fed second-order stream on the Edwards Plateau in central Texas during 2012–2013.Low-cost side-scan sonar surveys have not typically been used to generate data for riverscape assessments of assemblage structure, thus the secondary objective was to assess the efficacy of this approach.The finest spatial scale (micro-mesohabitat) and the intermediate scale (channel unit) had the greatest explanatory power for variation in fish assemblage structure.Many of the fish endemic to the Edwards Plateau showed similar associations with physicochemical and landscape variables suggesting that conservation and restoration actions targeting a single endemic species may provide benefits to a large proportion of the endemic species in this system.Low-cost side-scan sonar proved to be a cost-effective means of acquiring information on the habitat availability of the entire river length and allowed the assessment of how a full suite of riverscape-level variables influenced local fish assemblage structure.

  3. Diatoms as a fingerprint of sub-catchment contributions to meso-scale catchment runoff

    Science.gov (United States)

    Klaus, Julian; Wetzel, Carlos E.; Martinez-Carreras, Nuria; Ector, Luc; Pfister, Laurent

    2014-05-01

    In recent years, calls were made for new eco-hydrological approaches to improve understanding of hydrological processes. Recently diatoms, one of the most common and diverse algal groups that can be easily transported by flowing water due to their small size (~10-200 µm), were used to detect the onset and cessation of surface runoff to small headwater streams and constrain isotopic and hydro-chemical hydrograph separation methods. While the method showed its potential in the hillslope-riparian zone-stream continuum of headwater catchments, the behavior of diatoms and their use for hydrological process research in meso-scale catchments remains uncertain. Diatoms can be a valuable support for isotope and hydro-chemical tracer methods when these become ambiguous with increasing scale. Distribution and abundance of diatom species is controlled by various environmental factors (pH, soil type, moisture conditions, exposition to sunlight, etc.). We therefore hypothesize that species abundance and composition can be used as a proxy for source areas. This presentation evaluates the potential for diatoms to trace source-areas in the nested meso-scale Attert River basin (250 km2, Luxembourg, Europe). We sampled diatom populations in streamwater during one flood event in Fall 2011 in 6 sub-catchments and the basin outlet - 17 to 28 samples/catchment for the different sampling locations. Diatoms were classified and counted in every individual sample. In total more than 400 diatom species were detected. Ordination analysis revealed a clear distinction between communities sampled in different sub-catchments. The species composition at the catchment outlet reflects a mixing of the diatom composition originating from different sub-catchments. This data suggests that diatoms indeed can reflect the geographic origin of stream water at the catchment outlet. The centroids of the ordination analysis might be linked to the physiographic characteristics (geology and land use) of the

  4. Fishy Business: Response of Stream Fish Assemblages to Small Hydro-power Plant Induced Flow Alteration in the Western Ghats, Karnataka

    Science.gov (United States)

    Rao, S. T.; Krishnaswamy, J.; Bhalla, R. S.

    2017-12-01

    Alteration of natural flow regimes is considered as a major threat to freshwater fish assemblages as it disturbs the water quality and micro-habitat features of rivers. Small hydro-power (SHP), which is being promoted as a clean and green substitute for large hydro-power generation, alters the natural flow regime of head-water streams by flow diversion and regulation. The effects of altered flow regime on tropical stream fish assemblages, driven by seasonality induced perturbations to water quality and microhabitat parameters are largely understudied. My study examined the potential consequences of flow alteration by SHPs on fish assemblages in two tributaries of the west-flowing Yettinahole River which flows through the reserved forests of Sakleshpur in the Western Ghats of Karnataka. The flow in one of the tributaries followed natural flow regime while the other comprised three regimes: a near-natural flow regime above the dam, rapidly varying discharge below the dam and a dewatered regime caused by flow diversion. The study found that the altered flow regime differed from natural flow regime in terms of water quality, microhabitat heterogeneity and fish assemblage response, each indicative of the type of flow alteration. Fish assemblage in the natural flow regime was characterized by a higher catch per site, a strong association of endemic and trophic specialist species. The flow regime above the dam was found to mimic some components of the natural flow regime, both ecological and environmental. Non endemic, generalist and pool tolerant species were associated with the dewatered regime. There was a lack of strong species-regime association and an overall low catch per site for the flow regulated regime below the dam. This study highlights the consequences of altered flows on the composition of freshwater fish assemblages and portrays the potential of freshwater fish as indicators of the degree and extent of flow alteration. The study recommends the need for

  5. Fish assemblages

    Science.gov (United States)

    McGarvey, Daniel J.; Falke, Jeffrey A.; Li, Hiram W.; Li, Judith; Hauer, F. Richard; Lamberti, G.A.

    2017-01-01

    Methods to sample fishes in stream ecosystems and to analyze the raw data, focusing primarily on assemblage-level (all fish species combined) analyses, are presented in this chapter. We begin with guidance on sample site selection, permitting for fish collection, and information-gathering steps to be completed prior to conducting fieldwork. Basic sampling methods (visual surveying, electrofishing, and seining) are presented with specific instructions for estimating population sizes via visual, capture-recapture, and depletion surveys, in addition to new guidance on environmental DNA (eDNA) methods. Steps to process fish specimens in the field including the use of anesthesia and preservation of whole specimens or tissue samples (for genetic or stable isotope analysis) are also presented. Data analysis methods include characterization of size-structure within populations, estimation of species richness and diversity, and application of fish functional traits. We conclude with three advanced topics in assemblage-level analysis: multidimensional scaling (MDS), ecological networks, and loop analysis.

  6. Density-dependent effects of non-native brown trout Salmo trutta on the species-area relationship in stream fish assemblages.

    Science.gov (United States)

    Hasegawa, K; Mori, T; Yamazaki, C

    2017-01-01

    The spatial scale and density-dependent effects of non-native brown trout Salmo trutta on species richness of fish assemblages were examined at 48 study sites in Mamachi Stream, a tributary of Chitose River, Hokkaido, Japan. The density of age ≥1 year S. trutta was high in the upstream side of the main stem of Mamachi Stream. Fish species richness increased with increasing area of study sites (habitat size), but the increasing magnitude of the species richness with area decreased with increasing age of ≥1 year S. trutta density. The relationships between age ≥1 year S. trutta, however, and presence-absence of each species seemed to be different among species. Species richness was also determined by location and physical environmental variables, i.e. it was high on the downstream side and in structurally complex environments. © 2016 The Fisheries Society of the British Isles.

  7. Biological assessment of aquaculture effects on effluent-receiving streams in Ghana using structural and functional composition of fish and macroinvertebrate assemblages.

    Science.gov (United States)

    Ansah, Yaw Boamah; Frimpong, Emmanuel A; Amisah, Stephen

    2012-07-01

    Biological assessment of aquatic ecosystems is widely employed as an alternative or complement to chemical and toxicity testing due to numerous advantages of using biota to determine ecosystem condition. These advantages, especially to developing countries, include the relatively low cost and technical requirements. This study was conducted to determine the biological impacts of aquaculture operations on effluent-receiving streams in the Ashanti Region of Ghana. We collected water, fish and benthic macroinvertebrate samples from 12 aquaculture effluent-receiving streams upstream and downstream of fish farms and 12 reference streams between May and August of 2009, and then calculated structural and functional metrics for biotic assemblages. Fish species with non-guarding mode of reproduction were more abundant in reference streams than downstream (P = 0.0214) and upstream (P = 0.0251), and sand-detritus spawning fish were less predominant in reference stream than upstream (P = 0.0222) and marginally less in downstream locations (P = 0.0539). A possible subsidy-stress response of macroinvertebrate family richness and abundance was also observed, with nutrient (nitrogen) augmentation from aquaculture and other farming activities likely. Generally, there were no, or only marginal differences among locations downstream and upstream of fish farms and in reference streams in terms of several other biotic metrics considered. Therefore, the scale of impact in the future will depend not only on the management of nutrient augmentation from pond effluents, but also on the consideration of nutrient discharges from other industries like fruit and vegetable farming within the study area.

  8. Comparison between sedimentary and living diatoms in Lago Maggiore (N. Italy: implications of using transfer functions

    Directory of Open Access Journals (Sweden)

    Simona MUSAZZI

    2001-02-01

    Full Text Available We compared the recent history of living planktonic diatom assemblages in Lago Maggiore with the remains found in the topmost section of 14 sediment cores taken from the lake. Sediment samples showed a marked domination of planktonic taxa, but a significant proportion of benthic taxa was found in cores collected close to river mouths. Between-core variability in diatom assemblage and in diatom-inferred total phosphorus concentration was also estimated. The implications of our results for calibration data sets relating environmental variables to diatom assemblages are also discussed.

  9. Does Nature and Persistence of Substrate at a Mesohabitat Scale Matter for Chironomidae Assemblages? a Study of Two Perennial Mountain Streams in Patagonia, Argentina

    Science.gov (United States)

    Epele, Luis Beltrán; Miserendino, María Laura; Brand, Cecilia

    2012-01-01

    Chironomid substrate—specific associations regarding the nature (organic—inorganic) and stability (stable—unstable) of different habitats were investigated at two low order Patagonian streams, during high and low water periods. Nant y Fall and Glyn rivers were visited twice (October 2007 and March 2008) and seven different habitat types were identified. A total of 60 samples were collected using a Surber sampler (0.09 m -2 and 250 µm) and a set of 23 environmental descriptors including physicochemical parameters and different fractions of particulate organic matter were assessed. 35 Chironomidae taxa were recorded with Orthocladiinae (20), Chironominae (7), and Podonominae (4) being the most well—represented subfamilies. Paratrichocladius sp. 1, Parapsectrocladius sp. 2, Parametriocnemus sp. 1, Pseudochironomus sp., and Rheotanytarsus sp. were the most abundant taxa. According to the relative preference index, at least 14 taxa showed strong affinity for a particular substrate. The structurally complex macrophyte Myriophyllum quitense supported 11 taxa compared with only five taxa found on the less complex Isoetes savatieri. Generally, stable substrates (boulders, cobbles, and rooted plants) supported significantly higher chironomids richness, abundance, and diversity than unstable ones (gravel—sand). Canonical correspondence analysis revealed that detritus (leaves, seeds, and biomass), macrophyte biomass, and secondarily hydraulic variables had high explanatory power on chironomids species composition and structure. This work suggests that more complex substrates showing persistence in the temporal dimension supported a diverse array of chironomids, meaning that the maintenance of natural habitat heterogeneity is essential for the community. Land—use practices having significant effects on ecological stream attributes such as increased turbidity, sediment deposition, and runoff patterns will alter assemblages. Understanding environmental associations

  10. Does nature and persistence of substrate at a mesohabitat scale matter for Chironomidae assemblages? A study of two perennial mountain streams in Patagonia, Argentina.

    Science.gov (United States)

    Epele, Luis Beltrán; Miserendino, María Laura; Brand, Cecilia

    2012-01-01

    Chironomid substrate-specific associations regarding the nature (organic-inorganic) and stability (stable-unstable) of different habitats were investigated at two low order Patagonian streams, during high and low water periods. Nant y Fall and Glyn rivers were visited twice (October 2007 and March 2008) and seven different habitat types were identified. A total of 60 samples were collected using a Surber sampler (0.09 m(-2) and 250 µm) and a set of 23 environmental descriptors including physicochemical parameters and different fractions of particulate organic matter were assessed. 35 Chironomidae taxa were recorded with Orthocladiinae (20), Chironominae (7), and Podonominae (4) being the most well-represented subfamilies. Paratrichocladius sp. 1, Parapsectrocladius sp. 2, Parametriocnemus sp. 1, Pseudochironomus sp., and Rheotanytarsus sp. were the most abundant taxa. According to the relative preference index, at least 14 taxa showed strong affinity for a particular substrate. The structurally complex macrophyte Myriophyllum quitense supported 11 taxa compared with only five taxa found on the less complex Isoetes savatieri. Generally, stable substrates (boulders, cobbles, and rooted plants) supported significantly higher chironomids richness, abundance, and diversity than unstable ones (gravel-sand). Canonical correspondence analysis revealed that detritus (leaves, seeds, and biomass), macrophyte biomass, and secondarily hydraulic variables had high explanatory power on chironomids species composition and structure. This work suggests that more complex substrates showing persistence in the temporal dimension supported a diverse array of chironomids, meaning that the maintenance of natural habitat heterogeneity is essential for the community. Land-use practices having significant effects on ecological stream attributes such as increased turbidity, sediment deposition, and runoff patterns will alter assemblages. Understanding environmental associations of the

  11. Resource synergy in stream periphyton communities

    Energy Technology Data Exchange (ETDEWEB)

    Hill, Walter [University of Illinois, Urbana-Champaign; Fanta, S.E. [University of Illinois; Roberts, Brian J [ORNL; Francoeur, Steven N. [Eastern Michigan University, Ypsilanti, MI

    2011-03-01

    1. Light and nutrients play pivotal roles in determining the growth of autotrophs, yet the potential for synergistic interactions between the two resources in algal communities is poorly understood, especially in stream ecosystems. In this study, light and phosphorus were manipulated in large experimental streams to examine resource colimitation and synergy in stream periphyton. 2. Whole-stream metabolism was simultaneously limited by light and phosphorus. Increasing the supply of either light or phosphorus resulted in significant increases in primary production and the transformation of the streams from heterotrophy to autotrophy. 3. Resource-driven changes in periphyton community structure occurred in concert with changes in production. Algal assemblages in highly shaded streams were composed primarily of small diatoms such as Achnanthidium minutissima, whereas larger diatoms such as Melosira varians predominated at higher irradiances. Phosphorus enrichment had relatively little effect on assemblage structure, but it did substantially diminish the abundance of Meridion circulare, a diatom whose mucilaginous colonies were conspicuously abundant in phosphorus-poor, high-light streams. Bacterial biomass declined relative to algal biomass with increases in primary productivity, regardless of whether the increases were caused by light or phosphorus. 4. Synergistic effects on primary production appeared to occur because the availability of one resource facilitated the utilization of the other. Light increased the abundance of large diatoms, which are known to convert high concentrations of nutrients into primary production more effectively than smaller taxa. Phosphorus enrichment led to the replacement of Meridion circulare by non-mucilaginous taxa in phosphorus-enriched streams, and we hypothesize that this change enabled more efficient use of light in photosynthesis. Higher ratios of chlorophyll a : biomass in phosphorus-enriched streams may have also led to more

  12. PiSCES: Pi(scine) stream community estimation software: A tool for nationwide fish assemblage predictions

    Science.gov (United States)

    Background/Question/Methods What species of fish might someone find in a local stream? How might that community change as a result of changes to characteristics of the stream and its watershed? PiSCES is a browser-based toolkit developed to predict a fish community for any NHD-Pl...

  13. Disentangling the pathways of land use impacts on the functional structure of fish assemblages in Amazon streams

    Science.gov (United States)

    Agricultural land use is a primary driver of environmental impacts on streams. However, the causal processes that shape these impacts operate through multiple pathways and at several spatial scales. This complexity undermines the development of more effective management approache...

  14. Species composition and spatial distribution of a stream fish assemblage in the east coast of Brazil: comparison of two field study methodologies

    Directory of Open Access Journals (Sweden)

    UIEDA V. S.

    2001-01-01

    Full Text Available The species composition and spatial distribution of a fish assemblage were studied in three reaches of a river in the east coast of Brazil: a section of rapids (upper, another of water flowing on plain terrain (lowland and the other of a mangrove environment. Two methods were employed with the purpose of estimating their effectiveness in naturalistic studies of tropical fish assemblages. One method consisted of underwater observations and the other was characterized by catches using gears such as fish traps, sieves and fishing rods. Both methods showed that their effectiveness is dependent upon the characteristics of the environment and the biology of the species. In areas of high water transparency and flow speed, rocky substrate and no submerged marginal vegetation (upper reach, the employment of the traditional gears was quite inefficient, despite the excellent conditions for underwater observations. In areas of clear water and high flow speed with abundant submerged marginal vegetation (lowland and mangrove, the gears were rather efficient yielding excellent results when coupled with direct observation methods. Since the abiotic characteristics of a stream change longitudinally, it is appropriate to employ different methods in the study of the ichthyofauna composition and distribution in order to reduce the constraints imposed by sampling methods in running waters.

  15. Species composition and spatial distribution of a stream fish assemblage in the east coast of Brazil: comparison of two field study methodologies

    Directory of Open Access Journals (Sweden)

    V. S. UIEDA

    Full Text Available The species composition and spatial distribution of a fish assemblage were studied in three reaches of a river in the east coast of Brazil: a section of rapids (upper, another of water flowing on plain terrain (lowland and the other of a mangrove environment. Two methods were employed with the purpose of estimating their effectiveness in naturalistic studies of tropical fish assemblages. One method consisted of underwater observations and the other was characterized by catches using gears such as fish traps, sieves and fishing rods. Both methods showed that their effectiveness is dependent upon the characteristics of the environment and the biology of the species. In areas of high water transparency and flow speed, rocky substrate and no submerged marginal vegetation (upper reach, the employment of the traditional gears was quite inefficient, despite the excellent conditions for underwater observations. In areas of clear water and high flow speed with abundant submerged marginal vegetation (lowland and mangrove, the gears were rather efficient yielding excellent results when coupled with direct observation methods. Since the abiotic characteristics of a stream change longitudinally, it is appropriate to employ different methods in the study of the ichthyofauna composition and distribution in order to reduce the constraints imposed by sampling methods in running waters.

  16. Body size and geographic range do not explain long term variation in fish populations: a Bayesian phylogenetic approach to testing assembly processes in stream fish assemblages.

    Directory of Open Access Journals (Sweden)

    Stephen J Jacquemin

    Full Text Available We combine evolutionary biology and community ecology to test whether two species traits, body size and geographic range, explain long term variation in local scale freshwater stream fish assemblages. Body size and geographic range are expected to influence several aspects of fish ecology, via relationships with niche breadth, dispersal, and abundance. These traits are expected to scale inversely with niche breadth or current abundance, and to scale directly with dispersal potential. However, their utility to explain long term temporal patterns in local scale abundance is not known. Comparative methods employing an existing molecular phylogeny were used to incorporate evolutionary relatedness in a test for covariation of body size and geographic range with long term (1983 - 2010 local scale population variation of fishes in West Fork White River (Indiana, USA. The Bayesian model incorporating phylogenetic uncertainty and correlated predictors indicated that neither body size nor geographic range explained significant variation in population fluctuations over a 28 year period. Phylogenetic signal data indicated that body size and geographic range were less similar among taxa than expected if trait evolution followed a purely random walk. We interpret this as evidence that local scale population variation may be influenced less by species-level traits such as body size or geographic range, and instead may be influenced more strongly by a taxon's local scale habitat and biotic assemblages.

  17. The role of the hydrological cycle on the temporal patterns of macroinvertebrate assemblages in an Andean foothill stream in Colombia

    Directory of Open Access Journals (Sweden)

    María I. Ríos-Pulgarín

    2016-03-01

    Full Text Available The seasonal and interannual changes in the structure, composition and functional feeding groups of the macroinvertebrate assemblage of the Guarinó River, a torrential system located in the Colombian Andean foothills, were examined in relation to the physical and chemical environmental changes associated with the hydrological cycle and the El Niño-Niña/Southern Oscillation (ENSO between 2007 and 2010. Benthic samples were collected at three sites in the lower sections of the river. A total of 127 taxa were collected in the study, with the total taxonomic richness per site ranging from 82 to 96 taxa and benthos density averaging 5.41 ind. m-2. The density showed a tendency to decrease in periods of maximum river level and flow, particularly during La Niña phenomena, and to increase in dry periods, especially in the third year (2009-2010 during El Niño phenomena. The presence and abundance of taxa, functional feeding groups and life habits were regulated by environmental parameters associated with hydrological variability, derived of ENSO phenomena, especially flow rate values. The assemblage showed high taxonomic and functional diversity, which is characteristic of ecosystems affected by recurrent hydrological disturbances, exhibiting differentiated responses based on adaptive strategies against the local hydrologic regime that allow fast recovery under conditions like ENSO phenomena. Such responses include composition changes according to adaptations to different hydrological scenarios, the predominance of generalist trophic guilds and taxa with plasticity in their habits and range of environmental tolerance.

  18. Spatial and temporal variation of algal assemblages in six Midwest agricultural streams having varying levels of atrazine and other physicochemical attributes

    Energy Technology Data Exchange (ETDEWEB)

    Andrus, J. Malia, E-mail: andrusm@waterborne-env.com [Waterborne Environmental, Inc., 2001 South First Street, Suite 109, Champaign, IL 61820 (United States); Winter, Diane, E-mail: dwinter1@juno.com [Rhithron Associates, Inc., 33 Fort Missoula Rd., Missoula, MT 59804 (United States); Algal Analysis, LLC, Missoula, MT (United States); Scanlan, Michael, E-mail: mscanlan@maptech-inc.com [MapTech, Inc., 3154 State Street, Blacksburg, VA 24060 (United States); Sullivan, Sean, E-mail: ssullivan@rhithron.com [Rhithron Associates, Inc., 33 Fort Missoula Rd., Missoula, MT 59804 (United States); Bollman, Wease, E-mail: wbollman@rhithron.com [Rhithron Associates, Inc., 33 Fort Missoula Rd., Missoula, MT 59804 (United States); Waggoner, J.B., E-mail: jwaggoner@inovatia.com [Inovatia, Inc., 120 East Davis Street, Fayette, MO 65248 (United States); Hosmer, Alan J., E-mail: alan.hosmer@syngenta.com [Syngenta Crop Protection, LLC, 410 Swing Rd., Greensboro, NC 27419 (United States); Brain, Richard A., E-mail: richard.brain@syngenta.com [Syngenta Crop Protection, LLC, 410 Swing Rd., Greensboro, NC 27419 (United States)

    2015-02-01

    Potential effects of pesticides on stream algae occur alongside complex environmental influences; in situ studies examining these effects together are few, and have not typically controlled for collinearity of variables. We monitored the dynamics of periphyton, phytoplankton, and environmental factors including atrazine, and other water chemistry variables at 6 agricultural streams in the Midwest US from spring to summer of 2011 and 2012, and used variation partitioning of community models to determine the community inertia that is explained uniquely and/or jointly by atrazine and other environmental factors or groups of factors. Periphyton and phytoplankton assemblages were significantly structured by year, day of year, and site, and exhibited dynamic synchrony both between site–years and between periphyton and phytoplankton in the same site–year. The majority of inertia in the models (55.4% for periphyton, 68.4% for phytoplankton) was unexplained. The explained inertia in the models was predominantly shared (confounded) between variables and variable groups (13.3, 30.9%); the magnitude of inertia that was explained uniquely by variable groups (15.1, 18.3%) was of the order hydroclimate > chemistry > geography > atrazine for periphyton, and chemistry > hydroclimate > geography > atrazine for phytoplankton. The variables most influential to the assemblage structure included flow and velocity variables, and time since pulses above certain thresholds of nitrate + nitrite, total phosphorus, total suspended solids, and atrazine. Time since a ≥ 30 μg/L atrazine pulse uniquely explained more inertia than time since pulses ≥ 10 μg/L or daily or historic atrazine concentrations; this result is consistent with studies concluding that the effects of atrazine on algae typically only occur at ≥ 30 μg/L and are recovered from. - Highlights: • We monitored algal communities at 6 Midwest streams receiving atrazine in 2011 and 2012. • Partitioning of CCA models of

  19. Spatial and temporal variation of algal assemblages in six Midwest agricultural streams having varying levels of atrazine and other physicochemical attributes

    International Nuclear Information System (INIS)

    Andrus, J. Malia; Winter, Diane; Scanlan, Michael; Sullivan, Sean; Bollman, Wease; Waggoner, J.B.; Hosmer, Alan J.; Brain, Richard A.

    2015-01-01

    Potential effects of pesticides on stream algae occur alongside complex environmental influences; in situ studies examining these effects together are few, and have not typically controlled for collinearity of variables. We monitored the dynamics of periphyton, phytoplankton, and environmental factors including atrazine, and other water chemistry variables at 6 agricultural streams in the Midwest US from spring to summer of 2011 and 2012, and used variation partitioning of community models to determine the community inertia that is explained uniquely and/or jointly by atrazine and other environmental factors or groups of factors. Periphyton and phytoplankton assemblages were significantly structured by year, day of year, and site, and exhibited dynamic synchrony both between site–years and between periphyton and phytoplankton in the same site–year. The majority of inertia in the models (55.4% for periphyton, 68.4% for phytoplankton) was unexplained. The explained inertia in the models was predominantly shared (confounded) between variables and variable groups (13.3, 30.9%); the magnitude of inertia that was explained uniquely by variable groups (15.1, 18.3%) was of the order hydroclimate > chemistry > geography > atrazine for periphyton, and chemistry > hydroclimate > geography > atrazine for phytoplankton. The variables most influential to the assemblage structure included flow and velocity variables, and time since pulses above certain thresholds of nitrate + nitrite, total phosphorus, total suspended solids, and atrazine. Time since a ≥ 30 μg/L atrazine pulse uniquely explained more inertia than time since pulses ≥ 10 μg/L or daily or historic atrazine concentrations; this result is consistent with studies concluding that the effects of atrazine on algae typically only occur at ≥ 30 μg/L and are recovered from. - Highlights: • We monitored algal communities at 6 Midwest streams receiving atrazine in 2011 and 2012. • Partitioning of CCA models of

  20. Spatial and temporal changes of benthic macroinvertebrate assemblages in acidified streams in the Bohemian Forest (Czech Republic)

    Czech Academy of Sciences Publication Activity Database

    Svobodová, Jana; Matěna, Josef; Kopáček, Jiří; Poláková, S.; Vrba, J.

    2012-01-01

    Roč. 34, č. 1 (2012), s. 157-172 ISSN 0165-0424. [European Congress of Entomology /9./. Budapest, 22.08.2010-27.08.2010] R&D Projects: GA ČR(CZ) GA206/07/1200 Institutional research plan: CEZ:AV0Z60170517 Keywords : atmospheric acidification * stream recovery * Lake Laka * Lake Čertovo Subject RIV: EH - Ecology, Behaviour Impact factor: 0.358, year: 2012

  1. Spatiotemporal Distribution and Assemblages of Fishes below the Lowermost Dam in Protected Reach in the Yangtze River Main Stream: Implications for River Management

    Science.gov (United States)

    Li, Junyi; Zhang, Hui; Lin, Danqing; Wu, Jinming; Wang, Chengyou; Xie, Xuan

    2016-01-01

    Now more and more ecologists concern about the impacts of dam construction on fish. However, studies of fishes downstream Gezhouba Dam were rarely reported except Chinese sturgeon (Acipenser sinensis Gray). In this study, catch investigations and five hydroacoustic detections were completed from 2015 to 2016 to understand the distribution, size, and categories of fishes and their relationship with the environmental factors below Gezhouba Dam in protected reach in the Yangtze River main stream. Results showed significant differences in fish distribution and TS (target strength) between wet and flood seasons. Mean TS in five hydroacoustic detections were −59.98 dB, −54.70 dB, −56.16 dB, −57.90 dB, and −59.17 dB, respectively, and dominant fish species are Coreius guichenoti (Bleeker), Siniperca chuatsi (Basilewsky), and Pelteobagrus vachelli (Richardson). In the longitudinal direction, fish preferred to stay in some specific sections like reaches 2, 4, 7, 8, 11, and 16. Since hydrology factors change greatly in different seasons, environmental characteristics vary along the reaches, and human activities play an important role in the fish behavior, it is concluded that great cross-season changes in hydrology lead to the differences in TS and fish assemblages and that geography characteristics, especially channel geography, together with human activities influence fish longitudinal distribution. This finding provides basic knowledge of spatiotemporal distribution and assemblages of fishes in the extended reaches downstream Gezhouba Dam. In addition, it offers implications for river management. It could also serve as reference of future research on fish habitat. PMID:27843943

  2. Effects and Non-effects of Stream Drying on Stonefly(Plecoptera) Assemblages in two Ouachita Mountains,AR, Catchments

    Science.gov (United States)

    Sheldon, A. L.; Warren, M. L.

    2005-05-01

    Streams integrate landscape change. To establish baseline conditions and predictive relationships in two experimental catchments, we collected adult stoneflies at 38 sites for a year. We used a stratified random sampling design and regular collections of adults, which are identifiable to species level, to ensure thorough coverage. We collected 43 species (1-27 per site). We characterized sites by two descriptors: stream size as drainage AREA, and DRY, a time-weighted average of absence of surface water in measured sections. Sites ranged from continuous surface flow to partial or total drying for months. Species composition (NMS ordination) was influenced strongly by DRY. Richness of species and genera were well described (R2>85%) by multiple regressions on AREA and DRY. However, species richness was related strongly to AREA (P0.45). Generic richness, in contrast, was related significantly(P<0.001)to both descriptors but the negative effect of DRY was stronger. Seasonal drying is common in the Ouachita region and part of the fauna is resistant to drying. Our results have implications for diversity-stress relationships and taxonomic resolution in community ecology and monitoring.

  3. Biophotonics of diatoms

    DEFF Research Database (Denmark)

    Gössling, Johannes Wilhelm

    Diatoms are unicellular microalgae present in all aquatic environments on earth. Due to their high photosynthetic productivity and abundance, diatoms are main components of aquatic food webs and among the main contributors of global photosynthetic carbon fixation. A unique feature of diatoms...

  4. The influence of land use on water quality and diatom community ...

    African Journals Online (AJOL)

    Epilithic diatom communities offer a holistic and integrated approach for assessing water quality as they remain in one place for a number of months and reflect an ecological memory of water quality over a period of time. The objective of this study is to use diatom assemblages to distinguish between particular land types ...

  5. A stress surveillance system based on calcium and nitric oxide in marine diatoms

    NARCIS (Netherlands)

    Vardi, A.; Formiggini, F.; Casotti, R.; De Martino, A.; Ribalet, F.; Miralto, A.; Bowler, C.

    2006-01-01

    Diatoms are an important group of eukaryotic phytoplankton, responsible for about 20% of global primary productivity. Study of the functional role of chemical signaling within phytoplankton assemblages is still in its infancy although recent reports in diatoms suggest the existence of chemical-based

  6. A stress surveillance system based on calcium and nitric oxide in marine diatoms.

    NARCIS (Netherlands)

    Vardi, A.; Formiggini, F.; Casotti, R.; De Martino, A.; Ribalet, F.; Miralto, A.; Bowler, C.

    2006-01-01

    Diatoms are an important group of eukaryotic phytoplankton, responsible for about 20% of global primary productivity. Study of the functional role of chemical signaling within phytoplankton assemblages is still in its infancy although recent reports in diatoms suggest the existence of chemical-based

  7. Digitisation of the South African diatom collection

    CSIR Research Space (South Africa)

    Van

    2008-06-01

    Full Text Available stream_source_info van der Molen_2008.pdf.txt stream_content_type text/plain stream_size 1285 Content-Encoding UTF-8 stream_name van der Molen_2008.pdf.txt Content-Type text/plain; charset=UTF-8 Digitisation... of the South African Diatom Collection Johan van der Molen, CSIR Background ➲ Since 1950 ➲ Properly curated ➲ In dis-use since ~1990 ➲ Renewed interest since ~2004 ➲ Water bodies in Southern Africa, mostly rivers ➲ Supports taxonomic work and biological...

  8. Diatom diet selectivity by early post-larval abalone Haliotis diversicolor supertexta under hatchery conditions

    Science.gov (United States)

    Zhang, Yuyu; Gao, Yahui; Liang, Junrong; Chen, Changping; Zhao, Donghai; Li, Xuesong; Li, Yang; Wu, Wenzhong

    2010-11-01

    Benthic diatoms constitute the primary diet of abalone during their early stages of development. To evaluate the dietary preferences of early post-larval abalone, Haliotis diversicolor supertexta, we analyzed the gut contents of post-larvae that settled on diatom films. We compared the abundance and species diversity of diatom assemblages in the gut to those of the epiphytic diatom assemblages on the attachment films, and identified 40 benthic diatom species in the gut contents of post-larvae 12 to 24 d after settlement. The most abundant taxa in the gut contents were Navicula spp., Amphora copulate, and Amphora coffeaeformis. Navicula spp. accounted for 64.0% of the cell density. In the attachment films, we identified 110 diatom species belonging to 38 genera. Pennate diatoms were the dominant members including the species Amphiprora alata, Cocconeis placentula var. euglypta, Cylindrotheca closterium, Navicula sp. 2, and A. coffeaeformis. Nano-diatoms (abalone seed. The difference of the composition and abundance of diatoms between in the guts and on the biofilms suggests that early post-larval grazing was selective. An early post-larval abalone preferred nano-diatoms and the genera Navicula and Amphora during the month after settlement.

  9. STREAM

    DEFF Research Database (Denmark)

    Godsk, Mikkel

    This paper presents a flexible model, ‘STREAM’, for transforming higher science education into blended and online learning. The model is inspired by ideas of active and collaborative learning and builds on feedback strategies well-known from Just-in-Time Teaching, Flipped Classroom, and Peer...... Instruction. The aim of the model is to provide both a concrete and comprehensible design toolkit for adopting and implementing educational technologies in higher science teaching practice and at the same time comply with diverse ambitions. As opposed to the above-mentioned feedback strategies, the STREAM...... model supports a relatively diverse use of educational technologies and may also be used to transform teaching into completely online learning. So far both teachers and educational developers have positively received the model and the initial design experiences show promise....

  10. Strange Assemblage

    Directory of Open Access Journals (Sweden)

    David Robert Cole

    2014-08-01

    Full Text Available This paper contends that the power of Deleuze & Guattari’s (1988 notion of assemblage as theorised in 1000 Plateaus can be normalised and reductive with reference to its application to any social-cultural context where an open system of dynamic and fluid elements are located. Rather than determining the assemblage in this way, this paper argues for an alternative conception of ‘strange assemblage’ that must be deliberately and consciously created through rigorous and focused intellectual, creative and philosophical work around what makes assemblages singular. The paper will proceed with examples of ‘strange assemblage’ taken from a film by Peter Greenaway (A Zed and 2 Noughts; the film ‘Performance’; educational research with Sudanese families in Australia; the book, Bomb Culture by Jeff Nuttall (1970; and the band Hawkwind. Fittingly, these elements are themselves chosen to demonstrate the concept of ‘strange assemblage’, and how it can be presented. How exactly the elements of a ‘strange assemblage’ come together and work in the world is unknown until they are specifically elaborated and created ‘in the moment’. Such spontaneous methodology reminds us of the 1960s ‘Happenings’, the Situationist International and Dada/Surrealism. The difference that will be opened up by this paper is that all elements of this ‘strange assemblage’ cohere in terms of a rendering of ‘the unacceptable.'

  11. Long-term survey of heavy-metal pollution, biofilm contamination and diatom community structure in the Riou Mort watershed, South-West France

    International Nuclear Information System (INIS)

    Morin, S.; Duong, T.T.; Dabrin, A.; Coynel, A.; Herlory, O.; Baudrimont, M.; Delmas, F.; Durrieu, G.; Schaefer, J.; Winterton, P.; Blanc, G.; Coste, M.

    2008-01-01

    In a metal-polluted stream in the Riou Mort watershed in SW France, periphytic biofilm was analyzed for diatom cell densities and taxonomic composition, dry weight and metal bio-accumulation (cadmium and zinc). Periphytic diatom communities were affected by the metal but displayed induced tolerance, seen through structural impact (dominance of small, adnate species) as well as morphological abnormalities particularly in the genera Ulnaria and Fragilaria. Species assemblages were characterized by taxa known to occur in metal-polluted environments, and shifts in the community structure expressed seasonal patterns: high numbers of Eolimna minima, Nitzschia palea and Pinnularia parvulissima were recorded in Summer and Autumn, whereas the species Surirella brebissonii, Achnanthidium minutissimum, Navicula lanceolata and Surirella angusta were dominant in Winter and Spring. Commonly used indices such as the Shannon diversity index and Specific Pollution Sensitivity Index reflected the level of pollution and suggest seasonal periodicity, the lowest diversities being observed in Summer. - Periphytic biofilm diatom communities are suitable indicators for the bioassay of elevated levels of metals in contaminated river water

  12. Changes in density and composition of algal assemblages in certain ...

    African Journals Online (AJOL)

    The water purification plants at Virginia and Bothaville, South Africa, experience problems with cyanobacteria and other algae. Their algal assemblages were studied during 2010 and 2011 to determine the dominant species that may pose problems in purification. Cyanobacteria, diatoms and green algae were the dominant ...

  13. Influence of land-use patterns on benthic diatom communities and ...

    African Journals Online (AJOL)

    The objective of this study was to determine the effects of land-use patterns on both diatom community composition and water quality in tropical streams during the dry season. Benthic diatom collections and water quality sampling were done 4 times at 10 sites. A suite of environmental variables that varied with human ...

  14. Effect of environmental quality and mesohabitat structure on a Biotic Integrity Index based on fish assemblages of cerrado streams from Rio Cuiabá basin, Brazil

    Directory of Open Access Journals (Sweden)

    NG Machado

    Full Text Available Over the last 30 years, the Cerrado has been experiencing various antropic impacts that have brought about alterations to species composition, structure and functioning of aquatic habitats. Therefore, studies on negative impacts are useful to prevent future damage and restore environmental quality. The objectives of our study were: i to adapt an index of biotic integrity of streams in the Rio Cuiabá Basin and ii to analyze if the Index of Biotic Integrity (IBI correlated with the environmental quality measured by the Index of Environmental Quality (IEQ and with the mesohabitat structure. We sampled 26 streams in sub-basins of the Cuiabá River. In each stream, we closed a stretch of 50 m with blockage nets and used electrofishing to capture fish. To obtain a measure of environmental quality in sampled units, we characterized the stream and its micro basin. For the analyses, we used the Spearman Correlation, Kruskal-Wallis test and Analysis of Multiple Regression. We collected 697 individuals distributed into 6 orders, 15 families and 49 species. The IBI followed changes on environmental quality measured by IEQ when we removed streams that present natural barriers from the analysis (r² = 0.4; r² = 0.58. Types of land use did not affect the biotic integrity (n = 26; df = 4; H = 4,860; p = 0.302, but natural and artificial barriers affected it (n = 26; df = 4; H = 11,027; p = 0.026. The IBI was not sensitive to variations in mesohabitat structure (F2,23 = 0.373; r² = 0.031; Axe 1 p = 0.620; Axe 2 p = 0.490. The IBI is certainly a reasonable instrument for evaluating changes in the environment, but we cannot ignore the fact that we were able to obtain the same result with any combinations of metrics. This makes its analysis and interpretation difficult.

  15. Ephemeroptera, Plecoptera and Trichoptera assemblages from riffles in mountain streams of Central Brazil: environmental factors influencing the distribution and abundance of immatures

    Directory of Open Access Journals (Sweden)

    P. C. Bispo

    Full Text Available The influence of environmental factors on the distribution of Ephemeroptera, Plecoptera and Trichoptera (EPT immatures was investigated in streams of the Brazilian Center-West (Serra do Pireneus, Pirenópolis, State of Goiás. The insects were sampled by lifting the stones in front of a sieve (0.5 mm mesh and then removing the insects from both the stone and the sieve. Sampling was carried out for 1 h at 5 collection sites over a period of 14 months. Air and water temperature (°C, water velocity (m/s, discharge (m³/s, electric conductivity (µS/cm, pH, and rainfall (mm were also recorded. In general, we may state that altitude, hydrologic classification (order and vegetation cover were the most important factors explaining the distribution of Ephemeroptera, Plecoptera and Trichoptera immatures. The influence of the rainfall on the temporal variation of the abundance of insects was stronger in stream segments of medium order (3rd, 4th order compared to smaller streams (first order.

  16. A caveat regarding diatom-inferred nitrogen concentrations in oligotrophic lakes

    Science.gov (United States)

    Arnett, Heather A.; Saros, Jasmine E.; Mast, M. Alisa

    2012-01-01

    Atmospheric deposition of reactive nitrogen (Nr) has enriched oligotrophic lakes with nitrogen (N) in many regions of the world and elicited dramatic changes in diatom community structure. The lakewater concentrations of nitrate that cause these community changes remain unclear, raising interest in the development of diatom-based transfer functions to infer nitrate. We developed a diatom calibration set using surface sediment samples from 46 high-elevation lakes across the Rocky Mountains of the western US, a region spanning an N deposition gradient from very low to moderate levels (phosphorus, and hypolimnetic water temperature were related to diatom distributions. A transfer function was developed for nitrate and applied to a sedimentary diatom profile from Heart Lake in the central Rockies. The model coefficient of determination (bootstrapping validation) of 0.61 suggested potential for diatom-inferred reconstructions of lakewater nitrate concentrations over time, but a comparison of observed versus diatom-inferred nitrate values revealed the poor performance of this model at low nitrate concentrations. Resource physiology experiments revealed that nitrogen requirements of two key taxa were opposite to nitrate optima defined in the transfer function. Our data set reveals two underlying ecological constraints that impede the development of nitrate transfer functions in oligotrophic lakes: (1) even in lakes with nitrate concentrations below quantification (<1 μg L−1), diatom assemblages were already dominated by species indicative of moderate N enrichment; (2) N-limited oligotrophic lakes switch to P limitation after receiving only modest inputs of reactive N, shifting the controls on diatom species changes along the length of the nitrate gradient. These constraints suggest that quantitative inferences of nitrate from diatom assemblages will likely require experimental approaches.

  17. Habitat segregation in fish assemblages

    OpenAIRE

    Ibbotson, A.T.

    1990-01-01

    The segregation of habitats of fish assemblages found in the chalk streams and rivers within the Wessex, South West and Southern Water Authority boundaries in southern England have been examined. Habitat segregation is the most frequent type of resource partitioning in natural communities. The habitat of individual fish species will be defined in order to determine the following: (1) the requirements of each species in terms of depth, current velocity, substrate, cover etc.; (2) identify the ...

  18. Environmental investigations using diatom microfossils

    Science.gov (United States)

    Smith, Kathryn E.L.; Flocks, James G.

    2010-01-01

    Diatoms are unicellular phytoplankton (microscopic plant-like organisms) with cell walls made of silica (called a frustule). They live in both freshwater and saltwater and can be found in just about every place on Earth that is wet. The shape and morphology of the diatom frustule unique to each species are used for identification. Due to the microscopic size of diatoms, high-power microscopy is required for diatom identification. Diatoms are vital to life on Earth. They are photosynthetic primary producers, using sunlight to create oxygen and organic carbon from carbon dioxide and water. They are a significant source of the oxygen we breathe, have a major impact on the global carbon cycle (Smetacek, 1999), and are a food source for many aquatic organisms (Mann, 1993). Diatom abundance has even been demonstrated to have an influence on the diversity of larger marine mammals, including whales (Marx and Uhen, 2010). Data on diatom abundance and diversity are extremely useful in environmental studies.

  19. Diatoms and the nanotechnology

    International Nuclear Information System (INIS)

    Toekesi, K.; Bereczky, R.J.; Lakatos, Gy.; Cserhati, C.

    2004-01-01

    Complete text of publication follows. During the last decade studies of interactions between highly charged ions (HCI) and solid surfaces are at the center of interest which is partly stimulated by potential future technical application such as nanofabrication. The investigation of the interactions of highly charged ions with internal surfaces recently become available due to the advances in the fabrication of micro- and nanocapillaries. These target materials offer the opportunity to observe 'hollow atom' formation in free space. Hollow atoms are an exotic form of matter where the atomic charge cloud resides in shells with large diameters while the core is virtually empty. In the past there has been an increasing amount of indirect evidence for the existence of this atomic state. Microcapillary transmission promises to provide direct evidence for the hollow atom formation for the first time. Our earlier theoretical descriptions rely on metallic microcapillaries which have proven to be quite successful in comparison with experimental data. However, since very detailed measurements have recently become available for insulator nanocapillaries, critical and precise tests of theory are only now being possible. We note, that the theoretical description of the interaction between the HCI and insulator nanocapillaries is far from being well understood. One of the key point of the experimental investigations is the preparation of the nanocapillaries. In this work we propose an alternative way to prepare insulator nanocapillaries. We take an advantage of the nature that during the evolution the cylindrical shape nanostructure was developed as a truss of diatoms. The truss of the diatoms contains roughly 99 % SiO 2 and in some cases of diatoms it form almost ideal cylindrical shape. As an example Fig. 1 shows the scanning electron micrograph of the diatom. The size of the holes in the truss are in the nanometer range (see Fig. 1a). On the basis of these properties the

  20. Diatomeas planctónicas de cursos de agua: Cuenca del Río Piedra Blanca (Córdoba, Argentina Diatom communities in the highland water streams. Piedra Blanca River basin (Córdoba, Argentina

    Directory of Open Access Journals (Sweden)

    Ana Luján M. De Fabricius

    2005-12-01

    Full Text Available El presente trabajo se realizó en el arroyo El Chacay y en el río Las Albahacas desde la primavera de 1999 hasta la primavera de 2000. El objetivo de esta investigación fue comparar la composición y abundancia de la comunidad diatómica en ríos y arroyos serranos de la cuenca del río Piedra Blanca, durante un ciclo anual. En total, 121 taxa (especies, variedades y formas fueron registrados a partir del análisis taxonómico. El orden Pennales predominó en número de especies y porcentaje de frecuencia relativa. El género con mayor número de especies fue Navicula. El número de especies osciló entre un mínimo de 21 en invierno de 2000 en el río Las Albahacas (aguas arriba del balneario y un máximo de 49 en verano de 2000 en el arroyo El Chacay y en primavera de 2000 en el río Las Albahacas (aguas arriba del balneario, respectivamente. El mayor número de especies corresponde a los menores porcentajes de frecuencia. La densidad osciló entre 1 org.ml-1 en otoño de 2000 en el río Las Albahacas, aguas arriba del balneario y 1596,40 org.ml-1 registrados en primavera de 1999 en el arroyo El Chacay. Los parámetros fisicoquímicos y la composición de especies determinaron una mayor afinidad entre los sitios en la estación de primavera.The present work was developed in El Chacay Creek and Las Albahacas River from 1999 spring to 2000 spring. The aim of this investigation was to compare the composition and abundance of the diatom communities of a highland water stream and a river within the Piedra Blanca River basin, during an annual cycle. As a result of a taxonomic analysis a total of 121 taxa (species, varieties and forms were recorded. The Order Pennales predominated in number of species and relative frequency. The genus with the highest number of species was Navicula. The total number of species varied from a minimum of 21 in 2000 winter season in the Las Albahacas River (upstream riverside resort to a maximun of 49 in 2000 summer

  1. The effect of the land use on phytoplankton assemblages of a Cerrado stream (Brazil Os efeitos do uso do solo sobre as assembleias fitoplanctônicas de um riacho de Cerrado (Brasil

    Directory of Open Access Journals (Sweden)

    Mateus Ferrareze

    2012-03-01

    Full Text Available AIM: Our aim was to investigate whether land use from the adjacent terrestrial environment influences phytoplankton assemblage structure (composition, richness, diversity, and abundance and biomass (chlorophyll-a in a Cerrado stream during different periods of the year. METHOD: The fieldwork was carried out at each 3 months during two years. RESULTS: The physical and chemical variables that better indicated differences in water condition were conductivity, dissolved oxygen, and transparency. There was also a noticeable increase in the concentration of nitrogen, phosphorus, and suspended matter in the water during summer due to the direct effects of rainfall. The phytoplankton assemblages were composed by 64 species. Cryptophyceae was the most abundant group, followed by Bacillariophyceae. For both years, richness and diversity were higher during spring and autumn, while phytoplankton abundance and chlorophyll-a concentration were greater during autumn and summer. The cluster and the canonic correspondence analyses evidenced that seasonality and land use are important factors in structuring phytoplankton communities along the year. Alterations in phytoplankton assemblages registered herein were probably a consequence of variations on intensity and frequency of water mixing, along with the input of nutrients from the adjacent terrestrial system. CONCLUSION: Overall phytoplankton assemblage structure showed to be highly influenced by land use, corroborating our initial hypothesis.OBJETIVO: Nosso objetivo foi investigar se o uso do solo do ambiente terrestre adjacente influencia a estrutura das assembleias fitoplanctônicas (composição, riqueza, diversidade e abundância e biomassa (clorofila-a em um riacho de Cerrado durante diferentes períodos do ano. MÉTODOS: Os trabalhos de campo foram realizados trimestralmente durante dois anos. RESULTADOS: As variáveis físico-químicas que melhor indicaram as diferenças nas condições da água foram

  2. Photosynthetic Pigments in Diatoms

    OpenAIRE

    Kuczynska, Paulina; Jemiola-Rzeminska, Malgorzata; Strzalka, Kazimierz

    2015-01-01

    Photosynthetic pigments are bioactive compounds of great importance for the food, cosmetic, and pharmaceutical industries. They are not only responsible for capturing solar energy to carry out photosynthesis, but also play a role in photoprotective processes and display antioxidant activity, all of which contribute to effective biomass and oxygen production. Diatoms are organisms of a distinct pigment composition, substantially different from that present in plants. Apart from light-harvestin...

  3. Diatom diversity and response in metal-polluted river environment: preliminary reports from Gromolo Torrent (Liguria, Italy)

    Science.gov (United States)

    Capello, Marco; Tolotti, Raffaella; Bernabè, Dimitri; Carbone, Cristina; Consani, Sirio; Vagge, Greta; Cutroneo, Laura

    2016-04-01

    Mineral content and physico-chemical properties of the freshwaters are the main factors affecting both algal assemblages and distributions, while presence of dissolved silicon, low water conductivity, and rocky-mountain habitats host benthic diatom assemblages of high species richness. It is shown that diatoms are sensible to the freshwater acidification (used as pH indicators in acid waters), environmental and climate changes, river organic load, and heavy metal water pollution. For this characteristic, diatoms are among the major biological markers for a variety of environmental and stratigraphic applications. In particular, qualitative and quantitative analyses (assemblage analyses) together with biotic indices as well as morphological and ultrastructure parameterisation provide tools for detailed environmental control and paleo-environmental reconstructions. Severe environmental problems are typically caused by "abandoned mine" and are consequences of the cessation of the mining activity with a lack in infrastructure maintenance. The mine waters which flow into the Gromolo Torrent are almost acidic (pH varying from 2.4 to 5) and enriched in heavy metals and SO42-. This pollution is caused by Acid Mine Drainage (AMD) processes that interest the Libiola mining area, known as a typical example of active AMD processes. The aim of this work is: 1) to characterise the local benthic diatom assemblages along the acidic mine effluents that discharge from Libiola mine, the entire Gromolo torrent course, and in the marine area off the torrent mouth; 2) to identify the main diatom biomarker taxa; 3) to highlight striking situations of equilibrium-disequilibrium in the algal communities, and 4) to point out types and frequency of some teratologies affecting specific diatom taxa as a response to environmental stressors (such as metal-metalloid enrichment). A total of 17 diatom samples was collected and examined, including some marine samples. Diatoms were collected in the

  4. Photosynthetic Pigments in Diatoms.

    Science.gov (United States)

    Kuczynska, Paulina; Jemiola-Rzeminska, Malgorzata; Strzalka, Kazimierz

    2015-09-16

    Photosynthetic pigments are bioactive compounds of great importance for the food, cosmetic, and pharmaceutical industries. They are not only responsible for capturing solar energy to carry out photosynthesis, but also play a role in photoprotective processes and display antioxidant activity, all of which contribute to effective biomass and oxygen production. Diatoms are organisms of a distinct pigment composition, substantially different from that present in plants. Apart from light-harvesting pigments such as chlorophyll a, chlorophyll c, and fucoxanthin, there is a group of photoprotective carotenoids which includes β-carotene and the xanthophylls, diatoxanthin, diadinoxanthin, violaxanthin, antheraxanthin, and zeaxanthin, which are engaged in the xanthophyll cycle. Additionally, some intermediate products of biosynthetic pathways have been identified in diatoms as well as unusual pigments, e.g., marennine. Marine algae have become widely recognized as a source of unique bioactive compounds for potential industrial, pharmaceutical, and medical applications. In this review, we summarize current knowledge on diatom photosynthetic pigments complemented by some new insights regarding their physico-chemical properties, biological role, and biosynthetic pathways, as well as the regulation of pigment level in the cell, methods of purification, and significance in industries.

  5. Photosynthetic Pigments in Diatoms

    Directory of Open Access Journals (Sweden)

    Paulina Kuczynska

    2015-09-01

    Full Text Available Photosynthetic pigments are bioactive compounds of great importance for the food, cosmetic, and pharmaceutical industries. They are not only responsible for capturing solar energy to carry out photosynthesis, but also play a role in photoprotective processes and display antioxidant activity, all of which contribute to effective biomass and oxygen production. Diatoms are organisms of a distinct pigment composition, substantially different from that present in plants. Apart from light-harvesting pigments such as chlorophyll a, chlorophyll c, and fucoxanthin, there is a group of photoprotective carotenoids which includes β-carotene and the xanthophylls, diatoxanthin, diadinoxanthin, violaxanthin, antheraxanthin, and zeaxanthin, which are engaged in the xanthophyll cycle. Additionally, some intermediate products of biosynthetic pathways have been identified in diatoms as well as unusual pigments, e.g., marennine. Marine algae have become widely recognized as a source of unique bioactive compounds for potential industrial, pharmaceutical, and medical applications. In this review, we summarize current knowledge on diatom photosynthetic pigments complemented by some new insights regarding their physico-chemical properties, biological role, and biosynthetic pathways, as well as the regulation of pigment level in the cell, methods of purification, and significance in industries.

  6. DIATOMS AS INDICATORS OF ISOLATED HERBACEOUS WETLAND CONDITION IN FLORIDA, USA

    Science.gov (United States)

    Benthic, epiphytic, and phytoplanktonic diatoms, as well as soil and water physical-chemical parameters, were sampled from 70 small (~1 ha) isolated depressional herbaceous wetlands located along a gradient of human disturbance in peninsular Florida to: 1) compare assemblage str...

  7. Late Pliocene diatoms in a diatomite from Prydz Bay, East Antarctica

    Science.gov (United States)

    Mahood, A.D.; Barron, J.A.

    1996-01-01

    Very well-preserved Pliocene diatoms from a diatomite unit interbedded within glacial sediments at Ocean Drilling Program Site 742 in Prydz Bay, Antarctica are documented and illustrated. The presence of Thalassiosira kolbei, T. torokina, Actinocyclus actinochilus, A. karstenii and the absence of Nitzschia interfrigidaria. T. insigna and T. vulnifica in Sample 119-742A-15R-4, 44-46cm constrain its age to ca. 2.2-1.8 Ma (late Pliocene). Diatoms associated with sea ice constitute 35% of the Pliocene diatom assemblage, compared with 71% of the modern sediment assemblage at the site, suggesting that sea ice was present during the late Pliocene period of deposition of the sample, although it probably was not the significant feature it is today. Thalassiosira ellitipora (Donahue) Fenner is described and illustrated in detail and is validly published. An expanded description and numerous illustrations are also presented for T. torokina Brady.

  8. The effects of hydrological dynamics on benthic diatom community structure in a highly stratified estuary: The case of the Ebro Estuary (Catalonia, Spain)

    Science.gov (United States)

    Rovira, L.; Trobajo, R.; Leira, M.; Ibáñez, C.

    2012-04-01

    This study of the distribution of benthic diatom assemblages and their relationship with environmental factors in a highly stratified Mediterranean estuary, i.e. the Ebro Estuary, shows the importance of hydrological dynamics to explain the features of the diatom community in such an estuary, where river flow magnitude and fluctuations imply strong physicochemical variability especially in sites close to the sea. Eight sites along the estuary were sampled during 2007-2008 both at superficial and deep water layers, in order to gather both horizontal and vertical estuarine physicochemical and hydrological gradients. Canonical Variates Analysis and Hierarchical Cluster Analysis segregated diatom community in two assemblages depending on the dynamics of the salt-wedge. The diatom assemblages of riverine conditions (i.e. without salt-wedge influence) where characterised by high abundances of Cocconeis placentula var. euglypta and Amphora pediculus, meanwhile high abundances of Nizschia frustulum and Nitzschia inconspicua were characteristic of estuarine conditions (i.e. under salt-wedge influence). Redundancy Analysis showed that both diatom assemblages responded seasonally to Ebro River flows, especially in estuarine conditions, where fluctuating conditions affected diatom assemblages both at spatial and temporal scale.

  9. Drivers of Change in a 7300-Year Holocene Diatom Record from the Hemi-Boreal Region of Ontario, Canada.

    Directory of Open Access Journals (Sweden)

    Kristen K Beck

    Full Text Available A Holocene lake sediment record spanning the past 7300 years from Wishart Lake in the Turkey Lakes Watershed in the Hemi-Boreal of central Ontario, Canada, was used to evaluate the potential drivers of long-term change in diatom assemblages at this site. An analysis of diatom assemblages found that benthic and epiphytic taxa dominated the mid-Holocene (7300-4000 cal yr BP, indicating shallow, oligotrophic, circum-neutral conditions, with macrophytes present. A significant shift in diatom assemblages towards more planktonic species (mainly Cyclotella sensu lato, but also several species of Aulacoseira, and Tabellaria flocculosa occurred ~4000 cal yr BP. This change likely reflects an increase in lake level, coincident with the onset of a more strongly positive moisture balance following the drier climates of the middle Holocene, established by numerous regional paleoclimate records. Pollen-inferred regional changes in vegetation around 4000 yrs BP, including an increase in Betula and other mesic taxa, may have also promoted changes in diatom assemblages through watershed processes mediated by the chemistry of runoff. A more recent significant change in limnological conditions is marked by further increases in Cyclotella sensu lato beginning in the late 19th century, synchronous with the Ambrosia pollen rise and increases in sediment bulk density, signaling regional and local land clearance at the time of Euro-Canadian settlement (1880 AD. In contrast to the mid-Holocene increase in planktonic diatoms, the modern increase in Cyclotella sensu lato likely indicates a response to land use and vegetation change, and erosion from the watershed, rather than a further increase in water level. The results from Wishart Lake illustrate the close connection between paleoclimate change, regional vegetation, watershed processes, and diatom assemblages and also provides insight into the controls on abundance of Cyclotella sensu lato, a diatom taxonomic group

  10. Relationships between diatoms and tidal environments in Oregon and Washington, USA

    Science.gov (United States)

    Sawai, Yuki; Horton, Benjamin P.; Kemp, Andrew C.; Hawkes, Andrea D.; Nagumo, Tamostsu; Nelson, Alan R.

    2016-01-01

    A new regional dataset comprising 425 intertidal diatom taxa from 175 samples from 11 ecologically diverse Oregon and Washington estuaries illustrates the importance of compiling a large modern dataset from a range of sites. Cluster analyses and detrended correspondence analysis of the diatom assemblages identify distinct vertical zones within supratidal, intertidal and subtidal environments at six of the 11 study sites, but the abundance of some of the most common species varies widely among and within sites. Canonical correspondence analysis of the regional dataset shows relationships between diatom species and tidal exposure, salinity and substratum (grain size and organic content). Correspondence analyses of local datasets show higher values of explained variation than the analysis of the combined regional dataset. Our results emphasize that studies of the autecology of diatom species require many samples from a range of modern environments to adequately characterize species–environment relationships.

  11. Phytoplankton Assemblage Patterns in the Southern Mid-Atlantic Bight

    Science.gov (United States)

    Makinen, Carla; Moisan, Tiffany A. (Editor)

    2012-01-01

    As part of the Wallops Coastal Oceans Observing Laboratory (Wa-COOL) Project, we sampled a time-series transect in the southern Mid-Atlantic Bight (MAB) biweekly. Our 2-year time-series data included physical parameters, nutrient concentrations, and chlorophyll a concentrations. A detailed phytoplankton assemblage structure was examined in the second year. During the 2-year study, chlorophyll a concentration (and ocean color satellite imagery) indicated that phytoplankton blooms occurred in January/February during mixing conditions and in early autumn under stratified conditions. The chlorophyll a concentrations ranged from 0.25 microgram 1(exp -1) to 15.49 microgram 1(exp -1) during the 2-year period. We were able to discriminate approximately 116 different species under phase contrast microscopy. Dominant phytoplankton included Skeletonema costatum, Rhizosolenia spp., and Pseudo-nitzschia pungens. In an attempt to determine phytoplankton species competition/succession within the assemblage, we calculated a Shannon Weaver diversity index for our diatom microscopy data. Diatom diversity was greatest during the winter and minimal during the spring. Diatom diversity was also greater at nearshore stations than at offshore stations. Individual genera appeared patchy, with surface and subsurface patches appearing abruptly and persisting for only 1-2 months at a time. The distribution of individual species differed significantly from bulk variables of the assemblage (chlorophyll a ) and total phytoplankton assemblage (cells), which indicates that phytoplankton species may be limited in growth in ways that differ from those of the total assemblage. Our study demonstrated a highly diverse phytoplankton assemblage throughout the year, with opportunistic species dominating during spring and fall in response to seasonal changes in temperature and nutrients in the southern MAB.

  12. Diatomic gasdynamic lasers.

    Science.gov (United States)

    Mckenzie, R. L.

    1972-01-01

    Predictions from a numerical model of the vibrational relaxation of anharmonic diatomic oscillators in supersonic expansions are used to show the extent to which the small anharmonicity of gases like CO can cause significant overpopulations of upper vibrational states. When mixtures of CO and N2 are considered, radiative gain on many of the vibration-rotation transitions of CO is predicted. Experiments are described that qualitatively verify the predictions by demonstrating laser oscillation in CO-N2 expansions. The resulting CO-N2 gasdynamic laser displays performance characteristics that equal or exceed those of similar CO2 lasers.

  13. Diatomic gasdynamic lasers

    International Nuclear Information System (INIS)

    McKenzie, R.L.

    1971-12-01

    Predictions from a numerical model of the vibrational relaxation of anharmonic diatomic oscillators in supersonic expansions are used to show the extent to which the small anharmonicity of gases like CO can cause significant over-populations of upper vibrational states. When mixtures of CO and N 2 are considered, radiative gain on many of the vibration-rotation transitions of CO is predicted. Experiments are described that qualitatively verify the predictions by demonstrating laser oscillation in CO-N 2 expansions. The resulting CO-N 2 gasdynamic laser displays performance characteristics that equal or exceed those of similar CO 2 lasers

  14. Controlling dynamics in diatomic systems

    Indian Academy of Sciences (India)

    WINTEC

    Abstract. Controlling molecular energetics using laser pulses is exemplified for nuclear motion in two different diatomic systems. The problem of finding the optimized field for maximizing a desired quantum dynamical target is formulated using an iterative method. The method is applied for two diatomic sys- tems, HF and OH.

  15. THE RESPONSE OF THE PERIPHYTIC DIATOM COMMUNITY TO ACID MINE DRAINAGE POLLUTION

    Directory of Open Access Journals (Sweden)

    Andreea Ciorba

    2004-01-01

    Full Text Available This paper proposes to relate the principal characteristics of diatom community (species richness, biodiversity, community biomass, diatom indices to the stress induced by acidification and high levels of metal. The study was done in a mine drainage affected area in Galicia (NW Spain by comparing periphytic diatom communities from polluted streams to ones in supposedly clean waters. The change in the dominant species was the clearest response to AMD pollution while species richness and diversity were sensitive only to high levels of pollution.

  16. Sustained effects of volcanic ash on biofilm stoichiometry, enzyme activity and community composition in North- Patagonia streams.

    Science.gov (United States)

    Carrillo, Uara; Díaz-Villanueva, Verónica; Modenutti, Beatriz

    2018-04-15

    Volcanic eruptions are extreme perturbations that affect ecosystems. These events can also produce persistent effects in the environment for several years after the eruption, with increased concentrations of suspended particles and the introduction of elements in the water column. On 4th June 2011, the Puyehue-Cordón Caulle Volcanic Complex (40.59°S-72.11°W, 2200m.a.s.l.) erupted explosively in southern Chile. The area affected by the volcano was devastated; a thick layer of volcanic ash (up to 30cm) was deposited in areas 50 km east of the volcano towards Argentina. The aim of the present study was to evaluate the effect of volcanic ash deposits on stream ecosystems four years after the eruption, comparing biofilm stoichiometry, alkaline phosphatase activity, and primary producer's assemblage in streams which were severely affected by the volcano with unaffected streams. We confirmed in the laboratory that ash deposited in the catchment of affected streams still leach phosphorus (P) into the water four years after eruption. Results indicate that affected streams still receive volcanic particles and that these particles release P, thus stream water exhibits high P concentration. Biofilm P content was higher and the C:P ratio lower in affected streams compared to unaffected streams. As a consequence of less P in unaffected streams, the alkaline phosphatase activity was higher compared to affected streams. Cyanobacteria increased their abundances (99.9% of total algal biovolume) in the affected streams suggesting that the increase in P may positively affect this group. On the contrary, unaffected streams contained a diatom dominant biofilm. In this way, local heterogeneity was created between sub-catchments located within 30 km of each other. These types of events should be seen as opportunities to gather valuable ecological information about how severe disturbances, like volcanic eruptions, shape landscapes and lotic systems for several years after the event

  17. Towards a representative periphytic diatom sample

    Directory of Open Access Journals (Sweden)

    2007-01-01

    Full Text Available The need to acquire a representative periphytic diatom sample for river water quality monitoring has been recognised in the development of existing diatom indices, important in the development and employment of diatom monitoring tools for the Water Framework Directive. In this study, a nested design with replication is employed to investigate the magnitude of variation in diatom biomass, composition and Trophic Diatom Index at varying scales within a small chalk river. The study shows that the use of artificial substrates may not result in diatom communities that are typical of the surrounding natural substrates. Periphytic diatom biomass and composition varies between artificial and natural substrates, riffles and glides and between two stretches of the river channel. The study also highlights the existence of high variation in diatom frustule frequency and biovolume at the individual replicate scale which may have implications for the use of diatoms in routine monitoring.

  18. Development of a diatom-based multimetric index for acid mine drainage impacted depressional wetlands.

    Science.gov (United States)

    Riato, Luisa; Leira, Manel; Della Bella, Valentina; Oberholster, Paul J

    2018-01-15

    Acid mine drainage (AMD) from coal mining in the Mpumalanga Highveld region of South Africa has caused severe chemical and biological degradation of aquatic habitats, specifically depressional wetlands, as mines use these wetlands for storage of AMD. Diatom-based multimetric indices (MMIs) to assess wetland condition have mostly been developed to assess agricultural and urban land use impacts. No diatom MMI of wetland condition has been developed to assess AMD impacts related to mining activities. Previous approaches to diatom-based MMI development in wetlands have not accounted for natural variability. Natural variability among depressional wetlands may influence the accuracy of MMIs. Epiphytic diatom MMIs sensitive to AMD were developed for a range of depressional wetland types to account for natural variation in biological metrics. For this, we classified wetland types based on diatom typologies. A range of 4-15 final metrics were selected from a pool of ~140 candidate metrics to develop the MMIs based on their: (1) broad range, (2) high separation power and (3) low correlation among metrics. Final metrics were selected from three categories: similarity to reference sites, functional groups, and taxonomic composition, which represent different aspects of diatom assemblage structure and function. MMI performances were evaluated according to their precision in distinguishing reference sites, responsiveness to discriminate reference and disturbed sites, sensitivity to human disturbances and relevancy to AMD-related stressors. Each MMI showed excellent discriminatory power, whether or not it accounted for natural variation. However, accounting for variation by grouping sites based on diatom typologies improved overall performance of MMIs. Our study highlights the usefulness of diatom-based metrics and provides a model for the biological assessment of depressional wetland condition in South Africa and elsewhere. Copyright © 2017 Elsevier B.V. All rights reserved.

  19. Dynamics of late spring and summer phytoplankton communities on Georges Bank, with emphasis on diatoms, Alexandrium spp., and other dinoflagellates

    Science.gov (United States)

    Gettings, Rachel M.; Townsend, David W.; Thomas, Maura A.; Karp-Boss, Lee

    2014-05-01

    We analyzed the distribution, abundance, and succession patterns of major phytoplankton taxa on Georges Bank in relation to hydrography, nutrients, and size-fractionated chlorophyll concentrations (>20 μm; Gymnodinium spp., and Prorocentrum spp., had become more abundant. Patches of regenerated silicate during the June-July period appeared to support a post-spring-bloom diatom community on the central crest of the Bank (total diatom cell densities >180,000 cellsl-1) of Leptocylindrus spp., Dactyliosolen spp., and Guinardia flaccida. Multivariate statistical analyses of phytoplankton taxa and station locations revealed distinct assemblages of diatom and dinoflagellate taxa on the Bank throughout the late spring and summer. Results are interpreted in the ecological context of earlier-reported laboratory culture experiments on the competitive interactions between Alexandrium fundyense and diatoms.

  20. Effects of Didymosphenia geminata massive growth on stream communities: Smaller organisms and simplified food web structure.

    Science.gov (United States)

    Ladrera, Rubén; Gomà, Joan; Prat, Narcís

    2018-01-01

    This study aims to contribute to the understanding of the impact of Didymosphenia geminata massive growths upon river ecosystem communities' composition and functioning. This is the first study to jointly consider the taxonomic composition and functional structure of diatom and macroinvertebrate assemblages in order to determine changes in community structure, and the food web alterations associated with this invasive alga. This study was carried out in the Lumbreras River (Ebro Basin, La Rioja, Northern Spain), which has been affected by a considerable massive growth of D. geminata since 2011. The study shows a profound alteration in both the river community composition and in the food web structure at the sites affected by the massive growth, which is primarily due to the alteration of the environmental conditions, thus demonstrating that D. geminata has an important role as an ecosystem engineer in the river. Thick filamentous mats impede the movement of large invertebrates-especially those that move and feed up on it-and favor small, opportunistic, herbivorous organisms, mainly chironomids, that are capable of moving between filaments and are aided by the absence of large trophic competitors and predators -prey release effect-. Only small predators, such as hydra, are capable of surviving in the new environment, as they are favored by the increase in chironomids, a source of food, and by the reduction in both their own predators and other midge predators -mesopredator release-. This change in the top-down control affects the diatom community, since chironomids may feed on large diatoms, increasing the proportion of small diatoms in the substrate. The survival of small and fast-growing pioneer diatoms is also favored by the mesh of filaments, which offers them a new habitat for colonization. Simultaneously, D. geminata causes a significant reduction in the number of diatoms with similar ecological requirements (those attached to the substrate). Overall, D

  1. The effect of antibiotics on diatom communities

    Digital Repository Service at National Institute of Oceanography (India)

    DeCosta, P.M.; Anil, A.C.

    Effect of antibiotics (penicillin (P), streptomycin (S) and chloramphenicol (C)) on benthic diatom communities was evaluated using a modified extinction–dilution method. The high antibiotic combinations (2PSC and PSC) reduced diatoms by 99...

  2. Diatom genomics: genetic acquisitions and mergers.

    Science.gov (United States)

    Nisbet, R Ellen R; Kilian, Oliver; McFadden, Geoffrey I

    2004-12-29

    Diatom algae arose by two-step endosymbiosis. The complete genome of the diatom Thalassiosira pseudonana has now been sequenced, allowing us to reconstruct the remarkable intracellular gene transfers that occurred during this convoluted cellular evolution.

  3. Diatom Stratigraphy of FA-1 Core, Qarun Lake, Records of Holocene Environmental and Climatic Change in Faiyum Oasis, Egypt

    Directory of Open Access Journals (Sweden)

    Zalat Abdelfattah A.

    2017-06-01

    Full Text Available This study evaluates changes in the environmental and climatic conditions in the Faiyum Oasis during the Holocene based on diatom analyses of the sediment FA-1 core from the southern seashore of the Qarun Lake. The studied FA-1 core was 26 m long and covered the time span ca. 9.000 cal. yrs BP. Diatom taxa were abundant and moderately to well-preserved throughout the core sediments. Planktonic taxa were most abundant than the benthic and epiphytic forms, which were very rare and sparsely distributed. The most dominant planktonic genera were Aulacoseira and Stephanodiscus followed by frequently distribution of Cyclostephanos and Cyclotella species. The stratigraphic distribution patterns of the recorded diatoms through the Holocene sediments explained five ecological diatom groups. These groups represent distinctive environmental conditions, which were mainly related to climatic changes through the early and middle Holocene, in addition to anthropogenic activity during the late Holocene. Comparison of diatom assemblages in the studied sediment core suggests that considerable changes occurred in water level as well as salinity. There were several high stands of the freshwater lake level during humid, warmer-wet climatic phases marked by dominance of planktonic, oligohalobous and alkaliphilous diatoms alternated with lowering of the lake level and slight increases in salinity and alkalinity during warm arid conditions evident by prevalence of brackish water diatoms.

  4. Diatomic interaction potential theory applications

    CERN Document Server

    Goodisman, Jerry

    2013-01-01

    Diatomic Interaction Potential Theory, Volume 2: Applications discusses the variety of applicable theoretical material and approaches in the calculations for diatomic systems in their ground states. The volume covers the descriptions and illustrations of modern calculations. Chapter I discusses the calculation of the interaction potential for large and small values of the internuclear distance R (separated and united atom limits). Chapter II covers the methods used for intermediate values of R, which in principle means any values of R. The Hartree-Fock and configuration interaction schemes des

  5. A synthesis of post-glacial diatom records from Lake Baikal

    Science.gov (United States)

    Bradbury, J. Platt; Bezrukova, E.; Chernyaeva, G.; Colman, S.M.; Khursevich, G.; King, J.W.; Likoshway, Ye. V.

    1994-01-01

    The biostratigraphy of fossil diatoms contributes important chronologic, paleolimnologic, and paleoclimatic information from Lake Baikal in southeastern Siberia. Diatoms are the dominant and best preserved microfossils in the sediments, and distinctive assemblages and species provide inter-core correlations throughout the basin at millennial to centennial scales, in both high and low sedimentation-rate environments. Distributions of unique species, once dated by radiocarbon, allow diatoms to be used as dating tools for the Holocene history of the lake.Diatom, pollen, and organic geochemical records from site 305, at the foot of the Selenga Delta, provide a history of paleolimnologic and paleoclimatic changes from the late glacial (15 ka) through the Holocene. Before 14 ka diatoms were very rare, probably because excessive turbidity from glacial meltwater entering the lake impeded productivity. Between 14 and 12 ka, lake productivity increased, perhaps as strong winds promoted deep mixing and nutrient regeneration. Pollen evidence suggests a cold shrub — steppe landscape dominated the central Baikal depression at this time. As summer insolation increased, conifers replaced steppe taxa, but diatom productivity declined between 11 and 9 ka perhaps as a result of increased summer turbidity resulting from violent storm runoff entering the lake via short, steep drainages. After 8 ka, drier, but more continental climates prevailed, and the modern diatom flora of Lake Baikal came to prominence.On Academician Ridge, a site of slow sedimentation rates, Holocene diatom assemblages at the top of 10-m cores reappear at deeper levels suggesting that such cores record at least two previous interglacial (or interstadial?) periods. Nevertheless, distinctive species that developed prior to the last glacial period indicate that the dynamics of nutrient cycling in Baikal and the responsible regional climatic environments were not entirely analogous to Holocene conditions. During

  6. Automated measurement of diatom size

    Science.gov (United States)

    Spaulding, Sarah A.; Jewson, David H.; Bixby, Rebecca J.; Nelson, Harry; McKnight, Diane M.

    2012-01-01

    Size analysis of diatom populations has not been widely considered, but it is a potentially powerful tool for understanding diatom life histories, population dynamics, and phylogenetic relationships. However, measuring cell dimensions on a light microscope is a time-consuming process. An alternative technique has been developed using digital flow cytometry on a FlowCAM® (Fluid Imaging Technologies) to capture hundreds, or even thousands, of images of a chosen taxon from a single sample in a matter of minutes. Up to 30 morphological measures may be quantified through post-processing of the high resolution images. We evaluated FlowCAM size measurements, comparing them against measurements from a light microscope. We found good agreement between measurement of apical cell length in species with elongated, straight valves, including small Achnanthidium minutissimum (11-21 µm) and largeDidymosphenia geminata (87–137 µm) forms. However, a taxon with curved cells, Hannaea baicalensis (37–96 µm), showed differences of ~ 4 µm between the two methods. Discrepancies appear to be influenced by the choice of feret or geodesic measurement for asymmetric cells. We describe the operating conditions necessary for analysis of size distributions and present suggestions for optimal instrument conditions for size analysis of diatom samples using the FlowCAM. The increased speed of data acquisition through use of imaging flow cytometers like the FlowCAM is an essential step for advancing studies of diatom populations.

  7. A stress surveillance system based on calcium and nitric oxide in marine diatoms.

    Directory of Open Access Journals (Sweden)

    Assaf Vardi

    2006-03-01

    Full Text Available Diatoms are an important group of eukaryotic phytoplankton, responsible for about 20% of global primary productivity. Study of the functional role of chemical signaling within phytoplankton assemblages is still in its infancy although recent reports in diatoms suggest the existence of chemical-based defense strategies. Here, we demonstrate how the accurate perception of diatom-derived reactive aldehydes can determine cell fate in diatoms. In particular, the aldehyde (2E,4E/Z-decadienal (DD can trigger intracellular calcium transients and the generation of nitric oxide (NO by a calcium-dependent NO synthase-like activity, which results in cell death. However, pretreatment of cells with sublethal doses of aldehyde can induce resistance to subsequent lethal doses, which is reflected in an altered calcium signature and kinetics of NO production. We also present evidence for a DD-derived NO-based intercellular signaling system for the perception of stressed bystander cells. Based on these findings, we propose the existence of a sophisticated stress surveillance system in diatoms, which has important implications for understanding the cellular mechanisms responsible for acclimation versus death during phytoplankton bloom successions.

  8. Increase in nuisance blooms and geographic expansion of the freshwater diatom Didymosphenia geminata

    Science.gov (United States)

    Spaulding, S.A.; Elwell, E.

    2007-01-01

    The diatom Didymosphenia geminata (Lyngbye) Schmidt is emerging as an organism with an extraordinary capacity to impact stream ecosystems on a global scale. In recent years, streams in New Zealand, North America, Europe, and Asia have been colonized by unprecedented masses of “didymo” and its extracellular stalks (fig. 1). This diatom is able to dominate stream surfaces by covering up to 100 percent of substrate with thicknesses of greater than 20 cm, greatly altering physical and biological conditions within streams. This species is expanding its geographic range in North America and the rate that nuisance blooms are reported by the public and local media are increasing, yet little scientific investigation of the phenomenon in North America has been initiated.

  9. Luminescence properties of a nanoporous freshwater diatom.

    Science.gov (United States)

    Goswami, Bondita; Choudhury, Amarjyoti; Buragohain, Alak K

    2012-01-01

    Freshwater diatom frustules show special optical properties. In this paper we observed luminescence properties of the freshwater diatom Cyclotella meneghiniana. To confirm the morphological properties we present scanning electron microscopy (SEM) images. X-ray diffraction (XRD) studies were carried out to visualize the structural properties of the frustules, confirming that silica present in diatom frustules crystallizes in an α-quartz structure. Study of the optical properties of the silica frustules of diatoms using ultra-violet-visible (UV-vis) spectroscopy and photoluminescence spectroscopy confirmed that the diatom C. meneghiniana shows luminescence in the blue region of the electromagnetic spectrum when irradiated with UV light. This property of diatoms can be exploited to obtain many applications in day-to-day life. Also, using time-resolved photoluminescence spectroscopy (TRPL) it was confirmed that this species of diatom shows bi-exponential decay. Copyright © 2011 John Wiley & Sons, Ltd.

  10. Diatoms in water quality assessment: to count or not to count them?

    Czech Academy of Sciences Publication Activity Database

    Brabcová, B.; Marvan, P.; Opatřilová, L.; Brabec, K.; Fránková, Markéta; Heteša, J.

    2017-01-01

    Roč. 795, č. 1 (2017), s. 113-127 ISSN 0018-8158 Institutional support: RVO:67985939 Keywords : diatoms * quantification * streams Subject RIV: EH - Ecology, Behaviour OBOR OECD: Marine biology, freshwater biology, limnology Impact factor: 2.056, year: 2016

  11. Do diatoms percolate through soil and can they be used for tracing the origin of runoff?

    Science.gov (United States)

    De Graaf, Lenka; Cammeraat, Erik; Pfister, Laurent; Wetzel, Carlos; Klaus, Julian; Hissler, Christophe

    2015-04-01

    Tracers are widely used to study the movement of water in a catchment. Because of depletion of scientific possibilities with most common tracer types, we proposed the use of diatoms as a natural tracer. Paradoxical results on the contribution of surface runoff to the storm hydrograph were obtained in pioneer research on this idea. Diatom transport via the subsurface flow to the stream would explain this paradox. Prerequisite for this is vertical transport of diatoms through soils, which is the topic of this study. Emphasis is on percolation behavior (speed of percolation, speed of percolation over time, and species distribution) of Pseudostaurosira sp. and Melosira sp. (Bacillariophyceae) through undisturbed soil columns of contrasting substrates. Co-objective is to study the flowpaths of water through the soil columns. Natural undisturbed soil columns were sampled in the Attert basin (Luxembourg) on schist, marl and sandstone substrates. Rain simulation experiments were performed to study vertical diatom transport. Rhodamine dye experiments were carried out to gain insight in the active flowpaths of water, and breakthrough experiments were performed to study the responses of the soil columns to applied water. Diatoms were transported through the soil columns of the three substrates. A vast majority of diatom percolation took place within the first 15 minutes, percolation hereafter was marginal but nevertheless present. Peaks in diatom percolation corresponded with a high flux caused by the addition of the diatom culture, but seepage of diatoms along the sides is unlikely according to the species distribution and the rhodamine dye experiment. Pseudostaurosira sp. percolated significantly better than Melosira sp. Significantly more diatoms percolated through the marl columns compared to the schist columns and variance within the sandstone group was very high. Absolute differences between substrates however, were marginal. Most preferential flowpaths were observed in

  12. Diatoms as Proxies for Abrupt Events in the Hudson River Estuary

    Science.gov (United States)

    Skorski, W.; Abbott, D. H.; Recasens, C.; Breger, D. L.

    2014-12-01

    The Hudson River estuary has been subject to many abrupt events throughout its history including hurricanes, droughts and pluvials. Hurricanes in particular are rare, discrete events that if fingerprinted can be used to develop better age models for Hudson River sediments. Proxies use observed physical characteristics or biological assemblages (e.g. diatom and foraminiferal assemblages) as tools to reconstruct past conditions prior to the modern instrumental record. Using a sediment core taken from the Hudson River (CDO2-29A), in New York City, drought and pluvial layers were selected based on Cs-137 dating while hurricane layers were determined from occurrences of tropical to subtropical foraminifera. Contrary to previous studies (Weaver, 1970, Weiss et al, 1978), more than sixty different diatom species have been identified using a scanning electron microscope (SEM). Cosmopolitan, hurricane and drought assemblages have begun to be identified after observing multiple layers (Table 1). Tropical foraminifera dominated by Globigerinoides ruber pink were also found in a hurricane layer that we infer was deposited during Hurricane Belle in 1976. More diatom abundance analyses and cataloged SEM pictures will provide further insight into these proxies. Table 1 Diatom Genera and Species Environment Clarification Cyclotella caspia Planktonic, marine-brackish Cosmopolitan Karayevia clevei Freshwater Cosmopolitan Melosira sp Planktonic, marine Cosmopolitan Thalassiosira sp Marine, brackish Cosmopolitan Staurosirella leptostauron Benthic, freshwater Cosmopolitan Actinoptychus senarius Planktonic or benthic, freshwater to brackish Hurricane and pluvial layers Amphora aff. sp Benthic, marine or freshwater Hurricane layers only Nitzschia sp Benthic, marine or freshwater Hurricane layers only Gomphonema sp Freshwater Hurricane layers only Surirella sp Marine-brackish Drought layer only Triceratium sp Marine Drought layer only Other Genera and species Environment Clarification

  13. Influência da urbanização sobre as assembléias de peixes em três córregos de Maringá, Paraná Influence of urbanization upon fish assemblages in three streams of Maringá, Paraná

    Directory of Open Access Journals (Sweden)

    Almir M. Cunico

    2006-12-01

    Full Text Available O objetivo do presente estudo foi avaliar padrões espaciais na composição, estrutura e distribuição das assembléias de peixes e suas relações com características abióticas em três córregos urbanos da cidade de Maringá, Paraná, Brasil. Peixes foram coletados ao longo de um gradiente longitudinal utilizando pesca elétrica nos meses de maio e novembro de 2004. Temperatura, nitrogênio, pH, oxigênio e fósforo foram as variáveis que mais influenciaram a análise de componentes principais (CPA. Riqueza, eqüitabilidade, índice de diversidade de Shannon-Wiener e o primeiro eixo da análise de correspondência com remoção do efeito do arco (DCA foram diretamente correlacionados com características ligadas ao impacto químico urbano. Adição de espécies prevaleceu nas estações de amostragem do córrego Miosótis e entre a cabeceira e porção intermediária nos córregos Nazaré e Mandacaru. Substituição ocorreu entre as porções intermediárias e foz desses córregos. A dominância da espécie tolerante Poecilia reticulata Peters, 1859 indicou a influência do impacto do meio urbano sobre as assembléias de peixes.The aim of the present study was to evaluate spatial patterns in composition, structure and distribution of fish assemblages and their relationships with abiotic characteristics in three urban streams of Maringá city, Paraná, Brazil. Fish were collected along the longitudinal gradient by electrofishing in May and November 2004. Temperature, nitrogen, pH, oxygen and phosphorous influenced at most the principal components analysis (PCA. Richness, evenness, Shannon-Wiener index and the first axis of detrended correspondence analysis (DCA were directly correlated with abiotic characteristics related to chemical urban impact. Species addition prevailed in Miosotis stream sampling stations, and between headwater and intermediary reaches in Nazaré and Mandacarú streams. Replacement occurred between intermediary and

  14. Affects and assemblages

    DEFF Research Database (Denmark)

    Samson, Kristine

    the paper raises the questions where to locate aesthetics when planners and architects wishes to design for aesthetical experiences and sensations rather than formal objects. The paper will proceed through a brief outline of the recent notion of assemblage and affect in urban studies, planning theory...... happens to aesthetics and how does it change the existing social and geographical understanding of urban space? The paper sets out to reintroduce aesthetical aspects of affects and assemblages in relation to urban space and urban planning. It presupposes urban space as a continuous state of becoming where...

  15. Sampler collection gadget for epilithic diatoms.

    Science.gov (United States)

    Salomoni, S E; Torgan, L C; Rocha, O

    2007-11-01

    This work present a new gadget for sampling epilithic diatoms from both lentic and lotic enviroments. The sampler consists of a polystyrene cylinder, left to float on the surface of the water, to which stone substrates are attached. This epilithic diatom sampler (EDS) can be used to detect spatial and temporal richness and density variation in the study of the diatom community, as well as in water quality monitoring.

  16. Sampler collection gadget for epilithic diatoms

    Directory of Open Access Journals (Sweden)

    SE. Salomoni

    Full Text Available This work present a new gadget for sampling epilithic diatoms from both lentic and lotic enviroments. The sampler consists of a polystyrene cylinder, left to float on the surface of the water, to which stone substrates are attached. This epilithic diatom sampler (EDS can be used to detect spatial and temporal richness and density variation in the study of the diatom community, as well as in water quality monitoring.

  17. A Southern Ocean Diatom Record of the Mid-Pleistocene Transition from the Amundsen Sea, Antarctica

    Science.gov (United States)

    Konfirst, M. A.; Scherer, R. P.

    2010-12-01

    In 2001 an 18.49m core was collected aboard Polarstern (cruise ANT-XVIII/5a) from the upper continental rise offshore from Pine Island Bay in the Amundsen Sea (69°19’S, 108°27’W) at 4014 m water depth. This location is important because it is one of the three main discharge locations for the WAIS and it is expected that IRD from melting icebergs would be concentrated in this region. Hillenbrand et al. (2009) collected data on magnetic susceptibility, wet bulk density, water content, biogenic opal, Ba/Al ratios (as a proxy for paleoproductivity), clay mineral content, and sand/ gravel fractions. To complement this data set, a high-resolution record (sample spacing 10cm) of the siliceous microfossil assemblages (diatoms and silicoflagellates) present in the core has been generated. Data include both relative abundance of individual diatom species and genera and absolute diatom abundance. Species composition in the upper 1004 cm is dominated by Fragilariopsis kerguelensis, which consistently composes 80-90% of the assemblage. Below 1004 cm the assemblage is more diverse, with Actinocyclus ingens, Thalassiothrix antarctica and F. kerguelensis consistently comprising the bulk of the assemblage. Additionally, the occurrence of A. ingens, Thalassiosira elliptipora and T. fasciculata can be used to confirm and further refine the age model established by Hillenbrand et al. (2009). Absolute abundance of diatom frustules varies from samples completely barren fossils to those with concentrations >4 x 107 valves/ g sediment and follows the biogenic opal measurements of Hillenbrand et al. (2009). A clear relationship between diatom abundance and glacial/interglacial variability is apparent in the upper 1004 cm and has been documented in the geochemical measurements of Hillenbrand et al. (2009). Significantly lower absolute abundance is observed below ~1004 cm; however, intervals with samples barren of fossils continue to alternate with those containing low concentrations

  18. Partitioning taxonomic diversity of aquatic insect assemblages ...

    Science.gov (United States)

    Biological diversity can be divided into: alpha (α, local), beta (β, difference in assemblage composition among locals), and gamma (γ, total diversity). We assessed the partitioning of taxonomic diversity of Ephemeroptera, Plecoptera and Trichoptera (EPT) and of functional feeding groups (FFG) in Neotropical Savanna (southeastern Brazilian Cerrado) streams. To do so, we considered three diversity components: stream site (α), among stream sites (β1), and among hydrologic units (β2). We also evaluated the association of EPT genera composition with heterogeneity in land use, instream physical habitat structure, and instream water quality variables. The percent of EPT taxonomic α diversity (20.7%) was lower than the β1 and β2 diversities (53.1% and 26.2%, respectively). The EPT FFG α diversity (26.5%) was lower than the β1 diversity (55.8%) and higher than the β2 (17.7%) diversity. The collector-gatherer FFG was predominant and had the greatest β diversity among stream sites (β1, 55.8%). Our findings support the need for implementing regional scale conservation strategies in the Cerrado biome, which has been degraded by anthropogenic activities. Using adaptations of the US EPA’s National Aquatic Resource Survey (NARS) designs and methods, Ferreira and colleagues examined the distribution of taxonomic and functional diversity of aquatic insects among basins, stream sites within basins, and within stream sample reaches. They sampled 160 low-order stre

  19. Diatom-inspired templates for 3D replication: natural diatoms versus laser written artificial diatoms

    International Nuclear Information System (INIS)

    Belegratis, M R; Schmidt, V; Nees, D; Stadlober, B; Hartmann, P

    2014-01-01

    The diatoms are ubiquitous, exist in large numbers and show a great diversity of features on their porous silica structures. Therefore, they inspire the fabrication of nanostructured templates for nanoimprint processes (NIL), where large structured areas with nanometer precision are required. In this study, two approaches regarding the respective challenges and potential exploitations are followed and discussed: the first one takes advantage of a template that is directly made of natural occurring diatoms. Here, two replication steps via soft lithography are needed to obtain a template which is subsequently used for NIL. The second approach exploits the technical capabilities of the precise 3D laser lithography (3DLL) based on two-photon polymerization of organic materials. This method enables the fabrication of arbitrary artificial diatom-inspired micro- and nanostructures and the design of an inverse structure. Therefore, only one replication step is needed to obtain a template for NIL. In both approaches, a replication technique for true 3D structures is shown. (paper)

  20. Assemblages of Patient Safety

    DEFF Research Database (Denmark)

    Balatsas Lekkas, Angelos

    2016-01-01

    This thesis identifies how design processes emerge during the use of devices in healthcare, by attending to assemblages where contingencies of risk and harm co-exist with the contribution of healthcare professionals to the safe care of patients. With support from the field of Science and Technology...... practices of interdisciplinary care....

  1. Translanguaging and Semiotic Assemblages

    Science.gov (United States)

    Pennycook, Alastair

    2017-01-01

    This paper asks what translanguaging could start to look like if it incorporated an expanded version of language and questioned not only to the borders between languages but also the borders between semiotic modes. Developing the idea of spatial repertoires and assemblages, and looking at data from a Bangladeshi-owned corner shop, this paper…

  2. Diatom and silicoflagellate biostratigraphy for the late Eocene: ODP 1090 (sub-Antarctic Atlantic)

    Science.gov (United States)

    Barron, John A.; Bukry, David B.; Gersonde, Rainer

    2014-01-01

    Abundant and well-preserved diatoms and silicofl agellate assemblages are documented through a complete late Eocene sequence, ODP Hole 1090B, recovered from the southern Agulhas Ridge in the sub-Antarctic South Atlantic. A sequence of Cestodiscus (diatom) species occurrence events involving C. pulchellus var. novazealandica, C. fennerae, C. antarcticus, C. convexus, C. trochus, and C. robustus is tied with paleomagnetic stratigraphy and provides the basis of proposing a new diatom zonation for the latest middle Eocene to early Oligocene (~37.6–33.4 Ma) of the sub-Antarctic South Atlantic. Comparison with previously published diatom occurrence charts suggested this zonation should be applicable throughout the low latitude regions of the world’s oceans. Silicofl agellates belong to the Dictyocha hexacantha and the overlying Corbisema apiculata Zones. The late Eocene succession of silicofl agellate species is dominated by Naviculopsis (20–60%). Naviculopsis constricta and N. foliacea dominate the D. hexacantha Zone, followed by the N. constricta, then N. biapiculata in the C. apiculata Zone. Cold-water Distephanus is most abundant in the latest Eocene along with N. biapiculata. The tops of zonal guide fossils Dictyocha hexacantha and Hannaites quadria (both 36.6 Ma) and Dictyocha spinosa (37.1 Ma) are tied with paleomagnetic stratigraphy.

  3. Colloquium on diatom-copepod interactions

    DEFF Research Database (Denmark)

    Paffenhofer, G.A.; Ianora, A.; Miralto, A.

    2005-01-01

    in situ were also addressed. During the plenary session, the most recent advances on this topic were presented. The plenary session was followed by 3 working groups on (1) production of aldehydes by phytoplankton, (2) toxic and nutritional effects of diatoms on zooplankton, and (3) the chemistry of diatom...

  4. Selective silicate-directed motility in diatoms

    DEFF Research Database (Denmark)

    Bondoc, Karen Grace V.; Heuschele, Jan; Gillard, Jeroen

    2016-01-01

    the major sink in the global Si cycle. Dissolved silicic acid (dSi) availability frequently limits diatom productivity and influences species composition of communities. We show that benthic diatoms selectively perceive and behaviourally react to gradients of dSi. Cell speed increases under d...

  5. Herbicide effects on freshwater benthic diatoms: Induction of nucleus alterations and silica cell wall abnormalities

    International Nuclear Information System (INIS)

    Debenest, T.; Silvestre, J.; Coste, M.; Delmas, F.; Pinelli, E.

    2008-01-01

    Benthic diatoms are well known bio-indicators of river pollution by nutrients (nitrogen and phosphorus). Biological indexes, based on diatom sensitivity for non-toxic pollution, have been developed to assess the water quality. Nevertheless, they are not reliable tools to detect pollution by pesticides. Many authors have suggested that toxic agents, like pesticides, induce abnormalities of the diatom cell wall (frustule). High abnormal frustule abundances have been reported in natural diatom communities sampled in streams contaminated by pesticides. However, no direct link was found between the abundances of abnormal frustules in these communities and the pesticide concentrations in stream water. In the present study, a freshwater benthic diatom community, isolated from natural biofilm and cultured under controlled conditions, was treated with a known genotoxic herbicide, maleic hydrazide (MH). Cells were exposed to three concentrations of MH (5 x 10 -6 , 10 -6 , 10 -7 M) for 6 h followed by a 24 h-recovery time. After MH treatments, nucleus alterations were observed: abnormal nucleus location, micronucleus, multinuclear cell or disruption of the nuclear membrane. A dose-dependent increase of nuclear alterations was observed. The difference between the control (9.65 nuclear alterations per 1000 cells observed (9.65 per mille ), S.D. = 4.23) and the highest concentrations (29.40 per mille , S.D. = 8.49 for 10 -6 M and 35.96 per mille , S.D. = 3.71 for 5 x 10 -6 M) was statistically significant (Tukey test, P -6 and 5 x 10 -6 M; Tukey test, P < 0.05). These two parameters tended to increase together (Pearson correlation = 0.702, P < 0.05). The results suggest that the induction of abnormal frustules could be associated with the genotoxic effects of MH. The alterations observed could be related to the effects of MH on the synthesis of the proteins involved in frustule formation or in the regulation of the cytoskeleton of the diatom cells

  6. Displacement functions for diatomic materials

    International Nuclear Information System (INIS)

    Panrkin, D.M.; Coulter, C.A.

    1979-01-01

    An extension of the methods of Lindhard et at. was used to calculate the total displacement function n/sub ij/(E) for a number of diatomic materials, where n/sub ij/(E) is defined to be the average number of atoms of type j which are displaced from their sites in a displacement cascade initiated by a PKA of type i and energy E. From the n/sub ij/(E) one can calculate the fraction n/sub ij/(E) of the displacements produced by a type i PKA with energy E which are of type j. Values of the n/sub ij/ for MgO, CaO, Al 2 O 3 , and TaO are presented. It is shown that for diatomic materials with mass ratios reasonably near one (e.g., MgO, Al 2 O 3 ) and equal displacement thresholds for the two species the n/sub ij/ become independent of the PKA type i at energies only a few times threshold. However, for larger mass ratios the n/sub ij/ do not become independent of i until much larger, energies are reached - e.g. > 10 5 eV for TaO. In addition, it is found that the n/sub ij/ depend sensitively on the displacement thresholds, with very dramatic charges occuring when the two thresholds become significantly different from one another

  7. Distribution of Epilithic Diatoms in Estuaries of the Korean Peninsula in Relation to Environmental Variables

    Directory of Open Access Journals (Sweden)

    Ha-Kyung Kim

    2015-11-01

    Full Text Available This study explores the relationships between environmental factors and the distribution of epilithic diatoms in 161 estuaries of three coastal areas on the Korean peninsula. We investigated epilithic diatoms, water quality, and land use in the vicinities of the estuaries during the months of May 2012, 2013 and 2014, because Korea is relatively free from the influences of rainfall at that time of year. We recorded 327 diatom taxa from the study sites, and the assemblage was dominated by members of the Naviculaceae. Bacillariaceae accounted for the largest proportion of diatoms, and Nitzschia inconspicua (18% and N. frustulum (9.6% were the most dominant species. A cluster analysis based on epilithic diatom abundance suggested that the epilithic diatom communities of Korean estuaries can be classified into four large groups (G according to geography, as follows: Ia—the East Sea watershed, Ib—the eastern watershed of the South Sea, IIa—the West Sea watershed, and IIb—the western watershed of the South Sea. The former two groups, Ia and Ib, showed higher proportions of forest land cover and use, higher species occurrence, lower salinity, lower turbidity, and lower concentrations of nutrients than the latter two groups, while the latter groups, IIa and IIb, had higher proportions of agricultural land cover and use, higher electrical conductivity, higher turbidity, higher concentrations of nutrients, and lower species occurrence. The environmental factors underlying the distribution of epilithic diatoms, representative of each region, are as follows: dissolved oxygen and forest land cover and use for Reimeria sinuate and Rhoicosphenia abbreviate of the East Sea (ES, salinity and turbidity for Tabularia fasciculate of the West Sea (WS, and biochemical oxygen demand (BOD and nutrients for Cyclotella meneghiniana of the WS. On the other hand, the most influential environmental factors affecting the occurrence of indicator species showing the

  8. Temporal changes in taxonomic and functional diversity of fish assemblages downstream from mountaintop mining

    Science.gov (United States)

    Hitt, Nathaniel P.; Chambers, Douglas B.

    2014-01-01

    Mountaintop mining (MTM) affects chemical, physical, and hydrological properties of receiving streams, but the long-term consequences for fish-assemblage structure and function are poorly understood. We sampled stream fish assemblages using electrofishing techniques in MTM exposure sites and reference sites within the Guyandotte River basin, USA, during 2010–2011. We calculated indices of taxonomic diversity (species richness, abundance, Shannon diversity) and functional diversity (functional richness, functional evenness, functional divergence) to compare exposure and reference assemblages between seasons (spring and autumn) and across years (1999–2011). We based temporal comparisons on 2 sites that were sampled during 1999–2001 by Stauffer and Ferreri (2002). Exposure assemblages had lower taxonomic and functional diversity than reference assemblages or simulated assemblages that accounted for random variation. Differences in taxonomic composition between reference and exposure assemblages were associated with conductivity and aqueous Se concentrations. Exposure assemblages had fewer species, lower abundances, and less biomass than reference assemblages across years and seasons. Green Sunfish (Lepomis cyanellus) and Creek Chub (Semotilus atromaculatus) became numerically dominant in exposure assemblages over time because of their persistence and losses of other taxa. In contrast, species richness increased over time in reference assemblages, a result that may indicate recovery from drought. Mean individual biomass increased as fish density decreased and most obligate invertivores were apparently extirpated at MTM exposure sites. Effects of MTM were not related to physical-habitat conditions but were associated with water-quality variables, which may limit quality and availability of benthic macroinvertebrate prey. Simulations revealed effects of MTM that could not be attributed to random variation in fish assemblage structure.

  9. Diatomic Metasurface for Vectorial Holography.

    Science.gov (United States)

    Deng, Zi-Lan; Deng, Junhong; Zhuang, Xin; Wang, Shuai; Li, Kingfai; Wang, Yao; Chi, Yihui; Ye, Xuan; Xu, Jian; Wang, Guo Ping; Zhao, Rongkuo; Wang, Xiaolei; Cao, Yaoyu; Cheng, Xing; Li, Guixin; Li, Xiangping

    2018-05-09

    The emerging metasurfaces with the exceptional capability of manipulating an arbitrary wavefront have revived the holography with unprecedented prospects. However, most of the reported metaholograms suffer from limited polarization controls for a restrained bandwidth in addition to their complicated meta-atom designs with spatially variant dimensions. Here, we demonstrate a new concept of vectorial holography based on diatomic metasurfaces consisting of metamolecules formed by two orthogonal meta-atoms. On the basis of a simply linear relationship between phase and polarization modulations with displacements and orientations of identical meta-atoms, active diffraction of multiple polarization states and reconstruction of holographic images are simultaneously achieved, which is robust against both incident angles and wavelengths. Leveraging this appealing feature, broadband vectorial holographic images with spatially varying polarization states and dual-way polarization switching functionalities have been demonstrated, suggesting a new route to achromatic diffractive elements, polarization optics, and ultrasecure anticounterfeiting.

  10. Characterization and classification of invertebrates as indicators of flow permanence in headwater streams

    Science.gov (United States)

    Headwater streams represent a large proportion of river networks and many have temporary flow. Litigation has questioned whether these streams are jurisdictional under the Clean Water Act. Our goal was to identify indicators of flow permanence by comparing invertebrate assemblage...

  11. Larval salamanders and channel geomorphology are indicators of hydrologic permanence in forested headwater streams

    Science.gov (United States)

    Regulatory agencies need rapid indicators of hydrologic permanence for jurisdictional determinations of headwater streams. Our study objective was to assess the utility of larval salamander presence and assemblage structure and habitat variables for determining stream permanence ...

  12. EXPERIMENTAL EFFECTS OF CONDUCTIVITY AND MAJOR IONS ON STREAM PERIPHYTON - abstract

    Science.gov (United States)

    Our study examined if specific conductivities comprised of different ions associated with resource extraction affected stream periphyton assemblages, which are important sources of primary production. Sixteen artificial streams were dosed with two ion recipes intended to mimic so...

  13. Shift in the species composition of the diatom community in the eutrophic Mauritanian coastal upwelling: Results from a multi-year sediment trap experiment (2003-2010)

    Science.gov (United States)

    Romero, Oscar E.; Fischer, Gerhard

    2017-12-01

    A multiannual, continuous sediment trap experiment was conducted at the mooring site CBeu (Cape Blanc eutrophic, ca. 20 °N, ca. 18 °W; trap depth = 1256-1296 m) in the high-productive Mauritanian coastal upwelling. Here we present fluxes and the species-specific composition of the diatom assemblage, and fluxes of biogenic silica (BSi, opal) and total organic carbon (TOC) for the time interval June 2003-Feb 2010. Flux ranges of studied parameters are (i) total diatoms = 1.2 ∗ 108-4.7 ∗ 104 valves m-2 d-1 (average = 5.9 × 106 valves ± 1.4 × 107); (ii) BSi = 296-0.5 mg m-2 d-1 (average = 41.1 ± 53.5 mg m-2 d-1), and (iii) TOC = 97-1 mg m-2 d-1 (average = 20.5 ± 17.8 mg m-2 d-1). Throughout the experiment, the overall good match of total diatom, BSi and TOC fluxes is reasonably consistent and reflects well the temporal occurrence of the main Mauritanian upwelling season. Spring and summer are the most favorable seasons for diatom production and sedimentation: out of the recorded 14 diatom maxima of different magnitude, six occurred in spring and four in summer. The diverse diatom community at site CBeu is composed of four main assemblages: benthic, coastal upwelling, coastal planktonic and open-ocean diatoms, reflecting different productivity conditions and water masses. A striking feature of the temporal variability of the diatom populations is the persistent pattern of seasonal groups' contribution: benthic and coastal upwelling taxa dominated during the main upwelling season in spring, while open-ocean diatoms were more abundant in fall and winter, when the upper water column becomes stratified, upwelling relaxes and productivity decreases. The relative abundance of benthic diatoms strongly increased after 2006, yet their spring-summer contribution remained high until the end of the trap experiment. The occurrence of large populations of benthic diatoms at the hemipelagic CBeu site is interpreted to indicate transport from shallow waters via nepheloid

  14. Using Bioassays and Species Sensitivity Distributions to Assess Herbicide Toxicity towards Benthic Diatoms

    Science.gov (United States)

    Larras, Floriane; Bouchez, Agnès; Rimet, Frédéric; Montuelle, Bernard

    2012-01-01

    Although benthic diatoms are widely used in ecological studies of aquatic systems, there is still a dearth of data concerning species sensitivities towards several contaminants. Within the same community, different species may respond differently depending on their physiological and ecological characteristics. This lack of knowledge makes specific appropriate risk assessment impossible. To find out whether species sensitivity distribution (SSD) could be used to estimate the risk of herbicide toxicity for diatoms, we need to know whether their sensitivity depends on their physiological and ecological characteristics. We carried out single-species bioassays on 11 diatom species exposed to 8 herbicides. Dose-responses relationships were used to extrapolate the Effective Concentration 5 (EC5) and the Effective Concentration 50 (EC50) for each exposure. These data were used to fit a SSD curve for each herbicide, and to determine the Hazardous concentration 5 (HC5) and 50 (HC50). Our results revealed a high level of variability of the sensitivity in the set of species tested. For photosystem-II inhibitor (PSII) herbicides, diatoms species displayed a typical grouping of sensitivity levels consistent with their trophic mode and their ecological guild. N-heterotroph and “motile” guild species were more tolerant of PSII inhibitors, while N-autotroph and “low profile” guild species were more sensitive. Comprehensive SSD curves were obtained for 5 herbicides, but not for sulfonylurea herbicides or for dimetachlor, which had toxicity levels that were below the range of concentration tested. The SSD curves provided the following ranking of toxicity: diuron> terbutryn> isoproturon> atrazine> metolachlor. The HC that affected 5% of the species revealed that, even at the usual environmental concentrations of herbicides, diatom assemblages could be affected, especially by isoproturon, terbutryn, and diuron. PMID:22952981

  15. Diatom-Based Paleoenvironmental Reconstruction of Lake Telmen for the Last 6230 Years

    Directory of Open Access Journals (Sweden)

    N.Soninkhishig

    2003-06-01

    Full Text Available The preserved diatom flora in a 14C dated (0-6230 yBP, 343 cm long core sequence from Lake Telmen, Mongolia, was investigated to determine the nature of the lake-ecosystem and watershed response to Late Holocene climate change. Modern Lake Telmen is a slightly saline (presently 4 g L-1 closed- basin lake located along a N-S and E-W aridity ecotone in north-central Mongolia, making it sensitive to climate-driven changes in effective moisture balance. Diatoms were not preserved regularly in two areas of the Lake Telmen sediment record (5380-41 50 yBP and 1050-425 yBP possibly due to high carbonate preservation; however, diatom preservation between these areas was good to excellent. Diatom-based paleosalinity reconstruction using species-specific salinity optima from the Northern Great Plains of North America and community analysis suggests the following climate-lake response model during the Late Holocene. From 6230 to 5520 radiocarbon years ago, warm-dry climate resulted in a small salty (20 g L-1 lake in the Telmen basin that was dominated by high salinity indicator species (e.g. Cyclotella caspia, Navicellapusilla, Brachysira aponina. From 3 860 to 1200 radiocarbon yBP, Lake Telmen recorded a period of a modulating climate that resulted in regular fluctuations in paleosalinity from 2 to 4 g L-1 in conjunction with lake level changes. Dominance in the diatom flora fluctuated between the freshwater planktonic form Cyclotella bodanica var. affinis and the salinity-tolerant benthic taxon Anomoeoneis sphaerophora f. costata during this period characterized by generally more humid climatic periods interspersed with dry-as-present conditions. The most modern samples (0-250 yBP preserve floristic assemblages similar to those found between 3860 to 1200 radiocarbon yBP and indicate that as recently as 250 years ago Lake Telmen had lower salinity values than modern day.

  16. Nitrogen deposition effects on diatom communities in lakes from three National Parks in Washington State

    Science.gov (United States)

    Sheibley, Richard W.; Enache, Mihaela; Swarzenski, Peter W.; Moran, Patrick W.; Foreman, James R.

    2014-01-01

    The goal of this study was to document if lakes in National Parks in Washington have exceeded critical levels of nitrogen (N) deposition, as observed in other Western States. We measured atmospheric N deposition, lake water quality, and sediment diatoms at our study lakes. Water chemistry showed that our study lakes were ultra-oligotrophic with ammonia and nitrate concentrations often at or below detection limits with low specific conductance (−1 year−1 and were variable both within and across the parks. Diatom assemblages in a single sediment core from Hoh Lake (Olympic National Park) displayed a shift to increased relative abundances of Asterionella formosa and Fragilaria tenera beginning in the 1969–1975 timeframe, whereas these species were not found at the remaining (nine) sites. These diatom species are known to be indicative of N enrichment and were used to determine an empirical critical load of N deposition, or threshold level, where changes in diatom communities were observed at Hoh Lake. However, N deposition at the remaining nine lakes does not seem to exceed a critical load at this time. At Milk Lake, also in Olympic National Park, there was some evidence that climate change might be altering diatom communities, but more research is needed to confirm this. We used modeled precipitation for Hoh Lake and annual inorganic N concentrations from a nearby National Atmospheric Deposition Program station, to calculate elevation-corrected N deposition for 1980–2009 at Hoh Lake. An exponential fit to this data was hindcasted to the 1969–1975 time period, and we estimate a critical load of 1.0 to 1.2 kg N ha−1 year−1 for wet deposition for this lake.

  17. Using bioassays and species sensitivity distributions to assess herbicide toxicity towards benthic diatoms.

    Directory of Open Access Journals (Sweden)

    Floriane Larras

    Full Text Available Although benthic diatoms are widely used in ecological studies of aquatic systems, there is still a dearth of data concerning species sensitivities towards several contaminants. Within the same community, different species may respond differently depending on their physiological and ecological characteristics. This lack of knowledge makes specific appropriate risk assessment impossible. To find out whether species sensitivity distribution (SSD could be used to estimate the risk of herbicide toxicity for diatoms, we need to know whether their sensitivity depends on their physiological and ecological characteristics. We carried out single-species bioassays on 11 diatom species exposed to 8 herbicides. Dose-responses relationships were used to extrapolate the Effective Concentration 5 (EC(5 and the Effective Concentration 50 (EC(50 for each exposure. These data were used to fit a SSD curve for each herbicide, and to determine the Hazardous concentration 5 (HC(5 and 50 (HC(50. Our results revealed a high level of variability of the sensitivity in the set of species tested. For photosystem-II inhibitor (PSII herbicides, diatoms species displayed a typical grouping of sensitivity levels consistent with their trophic mode and their ecological guild. N-heterotroph and "motile" guild species were more tolerant of PSII inhibitors, while N-autotroph and "low profile" guild species were more sensitive. Comprehensive SSD curves were obtained for 5 herbicides, but not for sulfonylurea herbicides or for dimetachlor, which had toxicity levels that were below the range of concentration tested. The SSD curves provided the following ranking of toxicity: diuron> terbutryn> isoproturon> atrazine> metolachlor. The HC that affected 5% of the species revealed that, even at the usual environmental concentrations of herbicides, diatom assemblages could be affected, especially by isoproturon, terbutryn, and diuron.

  18. Effects of forest conversion on the assemblages' structure of aquatic insects in subtropical regions

    Directory of Open Access Journals (Sweden)

    Tiago R.N. Bertaso

    2015-03-01

    Full Text Available The effects of forest conversion to agricultural land uses on assemblages of aquatic insects were analyzed in subtropical streams. Organisms and environmental variables were collected in six low-order streams: three streams located in a forested area, and three in areas converted to agricultural land uses. We expected that the aquatic insects' assemblage attributes would be significantly affected by forest conversion, as well as by environmental variables. Streams in converted areas presented lower species richness, abundance and proportion of sensitive insect taxa. The ANOSIM test evidenced strong difference in EPT assemblage structure between streams of forested and converted areas. The ISA test evidenced several EPT genera with high specificity to streams in forested areas and only one genus related to streams in converted areas. Thus, the impacts of the conversion of forested area to agricultural land uses have significantly affected the EPT assemblages, while environmental variables were not affected. We suggest that the effects detected can be influenced by two processes related to vegetation cover: i lower input of allochthonous material, and ii increased input of fine sediments in streams draining converted areas.

  19. An unusual early Holocene diatom event north of the Getz Ice Shelf (Amundsen Sea): Implications for West Antarctic Ice Sheet development

    Science.gov (United States)

    Esper, O.; Gersonde, R.; Hillenbrand, C.; Kuhn, G.; Smith, J.

    2011-12-01

    Modern global change affects not only the polar north but also, and to increasing extent, the southern high latitudes, especially the Antarctic regions covered by the West Antarctic Ice Sheet (WAIS). Consequently, knowledge of the mechanisms controlling past WAIS dynamics and WAIS behaviour at the last deglaciation is critical to predict its development in a future warming world. Geological and palaeobiological information from major drainage areas of the WAIS, like the Amundsen Sea Embayment, shed light on the history of the WAIS glaciers. Sediment records obtained from a deep inner shelf basin north of Getz Ice Shelf document a deglacial warming in three phases. Above a glacial diamicton and a sediment package barren of microfossils that document sediment deposition by grounded ice and below an ice shelf or perennial sea ice cover (possibly fast ice), respectively, a sediment section with diatom assemblages dominated by sea ice taxa indicates ice shelf retreat and seasonal ice-free conditions. This conclusion is supported by diatom-based summer temperature reconstructions. The early retreat was followed by a phase, when exceptional diatom ooze was deposited around 12,500 cal. years B.P. [1]. Microscopical inspection of this ooze revealed excellent preservation of diatom frustules of the species Corethron pennatum together with vegetative Chaetoceros, thus an assemblage usually not preserved in the sedimentary record. Sediments succeeding this section contain diatom assemblages indicating rather constant Holocene cold water conditions with seasonal sea ice. The deposition of the diatom ooze can be related to changes in hydrographic conditions including strong advection of nutrients. However, sediment focussing in the partly steep inner shelf basins cannot be excluded as a factor enhancing the thickness of the ooze deposits. It is not only the presence of the diatom ooze but also the exceptional preservation and the species composition of the diatom assemblage

  20. Diatom algae of the Guni river (Pamir)

    International Nuclear Information System (INIS)

    Kurbonova, P.A.; Hisoriev, H.H.

    2006-01-01

    There are presented the dates of the results of diatom algae (Bacillariophyta) of the Gunt river. There was found 107 species and 9 subspecies which belong to 3 classics, 12 ordos, 13 families and 28 genus

  1. Importance of sampling frequency when collecting diatoms

    KAUST Repository

    Wu, Naicheng; Faber, Claas; Sun, Xiuming; Qu, Yueming; Wang, Chao; Ivetic, Snjezana; Riis, Tenna; Ulrich, Uta; Fohrer, Nicola

    2016-01-01

    There has been increasing interest in diatom-based bio-assessment but we still lack a comprehensive understanding of how to capture diatoms’ temporal dynamics with an appropriate sampling frequency (ASF). To cover this research gap, we collected

  2. Analytic vibrational matrix elements for diatomic molecules

    International Nuclear Information System (INIS)

    Bouanich, J.P.; Ogilvie, J.F.; Tipping, R.H.

    1986-01-01

    The vibrational matrix elements and expectation values for a diatomic molecule, including the rotational dependence, are calculated for powers of the reduced displacement in terms of the parameters of the Dunham potential-energy function. (orig.)

  3. Oceanographic and Biogeochemical Insights from Diatom Genomes

    Science.gov (United States)

    Bowler, Chris; Vardi, Assaf; Allen, Andrew E.

    2010-01-01

    Diatoms are the most successful group of eukaryotic phytoplankton in the modern ocean and have risen to dominance relatively quickly over the last 100 million years. Recently completed whole genome sequences from two species of diatom, Thalassiosira pseudonana and Phaeodactylum tricornutum, have revealed a wealth of information about the evolutionary origins and metabolic adaptations that have led to their ecological success. A major finding is that they have incorporated genes both from their endosymbiotic ancestors and by horizontal gene transfer from marine bacteria. This unique melting pot of genes encodes novel capacities for metabolic management, for example, allowing the integration of a urea cycle into a photosynthetic cell. In this review we show how genome-enabled approaches are being leveraged to explore major phenomena of oceanographic and biogeochemical relevance, such as nutrient assimilation and life histories in diatoms. We also discuss how diatoms may be affected by climate change-induced alterations in ocean processes.

  4. Soliton solutions in a diatomic lattice system

    International Nuclear Information System (INIS)

    Yajima, Nobuo; Satsuma, Junkichi.

    1979-04-01

    A continuum limit is considered for a diatomic lattice system with a cubic nonlinearity. A long wave equation describing the interaction of acoustic and optical modes is obtained. It reduces, in certain approximations, to equations having coupled wave solutions. The solutions exhibit trapping of an optical mode by an acoustic soliton. The form of the trapped optical wave depends on the mass ratio of adjacent particles in the diatomic lattice. (author)

  5. Fish assemblage structure and relations with environmental conditions in a Rocky Mountain watershed

    Science.gov (United States)

    Quist, M.C.; Hubert, W.A.; Isaak, D.J.

    2004-01-01

    Fish and habitat were sampled from 110 reaches in the Salt River basin (Idaho and Wyoming) during 1996 and 1997 to assess patterns in fish assemblage structure across a Rocky Mountain watershed. We identified four distinct fish assemblages using cluster analysis: (1) allopatric cutthroat trout (Oncorhynchus clarki (Richardson, 1836)); (2) cutthroat trout - brook trout (Salvelinus fontinalis (Mitchell, 1814)) - Paiute sculpin (Cottus beldingi Eigenmann and Eigenmann, 1891); (3) cutthroat trout - brown trout (Salmo trutta L., 1758) - mottled sculpin (Cottus bairdi Girard, 1850); and (4) Cyprinidae-Catostomidae. The distribution of fish assemblages was explained by thermal characteristics, stream geomorphology, and local habitat features. Reaches with allopatric cutthroat trout and the cutthroat trout - brook trout - Paiute sculpin assemblage were located in high-elevation, high-gradient streams. The other two fish assemblages were generally located in low-elevation streams. Associations between habitat gradients, locations of reaches in the watershed, and occurrence of species were further examined using canonical correspondence analysis. The results suggest that stream geomorphology, thermal conditions, and local habitat characteristics influence fish assemblage structure across a Rocky Mountain watershed, and they provide information on the ecology of individual species that can guide conservation activities. ?? 2004 NRC Canada.

  6. Shaping up: a geometric morphometric approach to assemblage ecomorphology.

    Science.gov (United States)

    Bower, L M; Piller, K R

    2015-09-01

    This study adopts an ecomorphological approach to test the utility of body shape as a predictor of niche relationships among a stream fish assemblage of the Tickfaw River (Lake Pontchartrain Basin) in southeastern Louisiana, U.S.A. To examine the potential influence of evolutionary constraints, analyses were performed with and without the influence of phylogeny. Fish assemblages were sampled throughout the year, and ecological data (habitat and tropic guild) and body shape (geometric morphometric) data were collected for each fish specimen. Multivariate analyses were performed to examine relationships and differences between body shape and ecological data. Results indicate that a relationship exists between body shape and trophic guild as well as flow regime, but no significant correlation between body shape and substratum was found. Body shape was a reliable indicator of position within assemblage niche space. © 2015 The Fisheries Society of the British Isles.

  7. Diatom stratigraphy and long-term dissolved silica concentrations in the Baltic Sea

    Science.gov (United States)

    Olli, Kalle; Clarke, Annemarie; Danielsson, Åsa; Aigars, Juris; Conley, Daniel J.; Tamminen, Timo

    2008-10-01

    In many parts of the world coastal waters with anthropogenic eutrophication have experienced a gradual depletion of dissolved silica (DSi) stocks. This could put pressure on spring bloom diatom populations, e.g. by limiting the intensity of blooms or by causing shifts in species composition. In addition, eutrophication driven enhanced diatom growth is responsible for the redistribution of DSi from the water phase to the sediments, and changes in the growth conditions may be reflected in the sediment diatom stratigraphy. To test for changes in diatom communities we have analyzed four sediment cores from the Baltic Sea covering approximately the last 100 years. The sediment cores originate from the western Gulf of Finland, the Kattegat, the Baltic Proper and the Gulf of Riga. Three out of the four cores reveal only minor changes in composition of diatom assemblages, while the Gulf of Riga core contains major changes, occurring after the second World War. This area is set apart from the other Baltic Sea basins by a high frequency of low after spring bloom DSi concentrations (< 2 µmol L - 1 ) during a relatively well defined time period from 1991-1998. In 1991 to 1993 a rapid decline of DSi spring concentrations and winter stocks (down to 5 µmol L - 1 ) in the Gulf was preceded by exceptionally intense diatom spring blooms dominated by the heavily silicified species Thalassiosira baltica (1991-1992; up to 5.5 mg ww L - 1 ). T. baltica has been the principal spring bloom diatom in the Gulf of Riga since records began in 1975. DSi consumption and biomass yield experiments with cultured T. baltica suggest that intense blooms can potentially exhaust the DSi stock of the water column and exceed the annual Si dissolution in the Gulf of Riga. The phytoplankton time series reveals another exceptional T. baltica bloom period in 1981-1983 (up to 8 mg L - 1 ), which, however, took place before the regular DSi measurements. These periods may be reflected in the conspicuous

  8. Effects of geomorphology, habitat, and spatial location on fish assemblages in a watershed in Ohio, USA.

    Science.gov (United States)

    D'Ambrosio, Jessica L; Williams, Lance R; Witter, Jonathan D; Ward, Andy

    2009-01-01

    In this paper, we evaluate relationships between in-stream habitat, water chemistry, spatial distribution within a predominantly agricultural Midwestern watershed and geomorphic features and fish assemblage attributes and abundances. Our specific objectives were to: (1) identify and quantify key environmental variables at reach and system wide (watershed) scales; and (2) evaluate the relative influence of those environmental factors in structuring and explaining fish assemblage attributes at reach scales to help prioritize stream monitoring efforts and better incorporate all factors that influence aquatic biology in watershed management programs. The original combined data set consisted of 31 variables measured at 32 sites, which was reduced to 9 variables through correlation and linear regression analysis: stream order, percent wooded riparian zone, drainage area, in-stream cover quality, substrate quality, gradient, cross-sectional area, width of the flood prone area, and average substrate size. Canonical correspondence analysis (CCA) and variance partitioning were used to relate environmental variables to fish species abundance and assemblage attributes. Fish assemblages and abundances were explained best by stream size, gradient, substrate size and quality, and percent wooded riparian zone. Further data are needed to investigate why water chemistry variables had insignificant relationships with IBI scores. Results suggest that more quantifiable variables and consideration of spatial location of a stream reach within a watershed system should be standard data incorporated into stream monitoring programs to identify impairments that, while biologically limiting, are not fully captured or elucidated using current bioassessment methods.

  9. Diatom-Specific Oligosaccharide and Polysaccharide Structures Help to Unravel Biosynthetic Capabilities in Diatoms

    Directory of Open Access Journals (Sweden)

    Bruno Gügi

    2015-09-01

    Full Text Available Diatoms are marine organisms that represent one of the most important sources of biomass in the ocean, accounting for about 40% of marine primary production, and in the biosphere, contributing up to 20% of global CO2 fixation. There has been a recent surge in developing the use of diatoms as a source of bioactive compounds in the food and cosmetic industries. In addition, the potential of diatoms such as Phaeodactylum tricornutum as cell factories for the production of biopharmaceuticals is currently under evaluation. These biotechnological applications require a comprehensive understanding of the sugar biosynthesis pathways that operate in diatoms. Here, we review diatom glycan and polysaccharide structures, thus revealing their sugar biosynthesis capabilities.

  10. Herbicide effects on freshwater benthic diatoms: Induction of nucleus alterations and silica cell wall abnormalities

    Energy Technology Data Exchange (ETDEWEB)

    Debenest, T. [Ecolab UMR 5245 (INP ENSAT, CNRS, UPS), Equipe ECOGEN, Avenue de l' Agrobiopole - BP 32607 Auzeville Tolosane, 31326 Castanet Tolosan Cedex (France); Cemagref, 50 avenue de Verdun, 33612 Cestas Cedex (France); Silvestre, J. [Ecolab UMR 5245 (INP ENSAT, CNRS, UPS), Equipe ECOGEN, Avenue de l' Agrobiopole - BP 32607 Auzeville Tolosane, 31326 Castanet Tolosan Cedex (France); Coste, M.; Delmas, F. [Cemagref, 50 avenue de Verdun, 33612 Cestas Cedex (France); Pinelli, E. [Ecolab UMR 5245 (INP ENSAT, CNRS, UPS), Equipe ECOGEN, Avenue de l' Agrobiopole - BP 32607 Auzeville Tolosane, 31326 Castanet Tolosan Cedex (France)], E-mail: pinelli@ensat.fr

    2008-06-02

    Benthic diatoms are well known bio-indicators of river pollution by nutrients (nitrogen and phosphorus). Biological indexes, based on diatom sensitivity for non-toxic pollution, have been developed to assess the water quality. Nevertheless, they are not reliable tools to detect pollution by pesticides. Many authors have suggested that toxic agents, like pesticides, induce abnormalities of the diatom cell wall (frustule). High abnormal frustule abundances have been reported in natural diatom communities sampled in streams contaminated by pesticides. However, no direct link was found between the abundances of abnormal frustules in these communities and the pesticide concentrations in stream water. In the present study, a freshwater benthic diatom community, isolated from natural biofilm and cultured under controlled conditions, was treated with a known genotoxic herbicide, maleic hydrazide (MH). Cells were exposed to three concentrations of MH (5 x 10{sup -6}, 10{sup -6}, 10{sup -7} M) for 6 h followed by a 24 h-recovery time. After MH treatments, nucleus alterations were observed: abnormal nucleus location, micronucleus, multinuclear cell or disruption of the nuclear membrane. A dose-dependent increase of nuclear alterations was observed. The difference between the control (9.65 nuclear alterations per 1000 cells observed (9.65 per mille), S.D. = 4.23) and the highest concentrations (29.40 per mille, S.D. = 8.49 for 10{sup -6} M and 35.96 per mille , S.D. = 3.71 for 5 x 10{sup -6} M) was statistically significant (Tukey test, P < 0.05). Diatoms also exhibited frustules with deformed morphology and abnormal ornamentation. Significantly increased abundances of abnormal frustules were observed for the highest concentrations (10{sup -6} and 5 x 10{sup -6} M; Tukey test, P < 0.05). These two parameters tended to increase together (Pearson correlation = 0.702, P < 0.05). The results suggest that the induction of abnormal frustules could be associated with the genotoxic

  11. Energy transfer in diatom/diatom molecular collisions

    International Nuclear Information System (INIS)

    Sohlberg, K.W.

    1992-01-01

    In a collision of two molecules, the translational energy of the collision may be redistributed into internal energy of rotation, vibration, or electron motion, in one or both of the colliding partners. In addition, internal energy in one or more of these modes may be open-quotes quenchedclose quotes into translation, leading to a superelastic collision. Such energy transfer may take place by a number of mechanisms. This energy transfer is of fundamental importance in understanding chemical reaction dynamics. Nearly all chemical reactions take place through a bimolecular collision process (or multiple bimolecular collisions) and the quantum state specificity of the reaction can have a major role in determining the kinetics of the reaction, In particular, the author has investigated vibrational energy transfer in collisions between two diatomic molecules. In addition to serving as models for all molecular collision process, gas phase collisions of these species are ubiquitous in atmospheric phenomena which are of critical importance in answering the current questions about the human induced degradation of the earth's atmospheric. Classical trajectory methods have been used to explore the excitation of vibrations in gas-phase collisions of the nitrogen molecular ion with its parent molecule. The near symmetry of the reactants is shown to result in a high probability that the two molecules are excited by an equal amount of energy. This provides a possible explanation of the molecular beam measurements which show that the total number of vibrational energy quanta excited in the collision is, with a high probability that the two molecules are excited by an equal amount of energy. This provides a possible explanation of the molecular beam measurements which show that the total number of vibrational energy quanta excited in the collision is, with a high probability, even

  12. Late Maastrichtian foraminiferids and diatoms from the Polish Carpathians (Ropianka Formation, Skole Nappe): a case study from the Chmielnik-Grabówka composite section

    Science.gov (United States)

    Gasiński, M. Adam; Olshtynska, Alexandra; Uchman, Alfred

    2013-12-01

    Gasiński, M.A., Olshtynska, A. and Uchman, A. 2013. Late Maastrichtian foraminiferids and diatoms from the Polish Carpathians (Ropianka Formation, Skole Nappe): a case study from the Chmielnik-Grabowka composite section. Acta Geologica Polonica, 63(4), 515-525. Warszawa. Well-preserved foraminiferids have been found in the Chmielnik-Grabowka section (Skole Nappe, Polish Carpathians). The Abathomphalus mayaroensis (late Maastrichtian) and Racemiguembelina fructicosa (earlylate Maastrichtian) standard planktonic foraminiferal biozones have been recognized, based on the occurrence of their respective index species. Sediments of the R. fructicosa Zone contain diatoms, which are a rare component of Cretaceous flysch microfossil assemblages in the Carpathians. The diatom frustules and some foraminiferid tests are pyritized, probably after burial in the sediment, below the redox boundary or in the oxygen- deficient microenvironment inside the frustules or tests of microfossils; the presence of trace fossils and bioturbational structures in the same bed indicate an oxygenated sea floor.

  13. Fabrication of insulator nanocapillaries from diatoms

    International Nuclear Information System (INIS)

    Bereczky, R.J.; Tokesi, K.

    2006-01-01

    Complete text of publication follows. Diatoms are unicellular microscopic organisms with silicon-dioxide based skeleton enveloped with an organic material, which composes essentially polysaccharides and proteins (see Fig. 1a.). As it was shown, the valva of the diatoms build up almost from clean silicondioxide [1]. Therefore, removing the organic compounds from the diatom, we can have in our hand an ideal, about 100 μ m-sized, and almost cylindrical shaped insulating nanostructure. There are various techniques available to disembarrass the diatom from its organic compounds. We used the so called hydrogen peroxide method. The advantageous properties of this method are the followings: a) this is one of the fastest procedures among the possible methods, b) do not require special equipment, c) cheap, and last but not least it is less harmful for health compared to other methods. This procedure can be an alternative way of the fabrication of insulator nanocapillaries. In this case the preparation of the nanocapillaries is simple and quick. Moreover, we do not need to invest expensive special techniques, (like micromachining-, electrochemical etching technique, moulding process etc) as it was necessary for the case of previously developed method producing insulator nanocapillaries [2,3]. Fig. 1b and Fig. 1c. show the scanning electron micrograph of the skeleton of the diatoms. The size of the cylindrical holes are roughly 200 nm (see Fig. 1c). (author)

  14. Epilithic algal assemblages in the Forsmark Biotest basin

    Energy Technology Data Exchange (ETDEWEB)

    Snoeijs, P.

    1987-04-01

    The Forsmark Biotest Basin is an artificial offshore brackish lake, through which the cooling water is led from the Forsmark Nuclear Power Station on the Swedish east coast. The Biotest Basin differs from the Bothnian Sea surrounding it by a temperature elevation of up to 10 degrees C, no ice cover in winter, and an artificial, fast current. At 11 sites in- and outside the basin, benthic algal assemblages on stones in the hydrolittoral belt were sampled every third week during one year. Cover abundances were estimated for all algae occurring on the stones, but for diatoms only when they formed blooms. The results of the vegetation analyses are given. Diversity indices and dominance-diversity curves were computed for each site on the basis of pooled data for the cold season and for the rest of the year. The algae included both unicellular and multicellular forms. In total 88 taxa were distinguished in the species lists: 29 Cyanophyta, 7 Rhodophyta, 1 Chrysophyceae, 9 Fucophyceae, 17 Diatomophyceae and 25 Chlorophyta. In terms of percentage cover-abundance, blue-green and green algae increased with temperature, while red and brown algae and diatoms decreased with temperature in the interval between the minimum (0 degrees C) and the maximum (25.7 degrees C) water temperatures that were measured during the investigation period. Melosira spp. and Nitzschia filiformis proved to be the diatoms most favoured by the cooling water discharge. Lower diversity and greater dominance of one or a few species over the other was caused by thermal discharge at sites with fast-flowing water, but the opposite occurred at sites with quiescent water, mainly due to a greater number and higher abundances of blue-green algal species and thread-like green algae at the latter sites. This report also gives some notes on taxonomy of the encountered species.

  15. Organização das assembléias de peixes em riachos da bacia do rio Iguatemi, Estado do Mato Grosso do Sul - DOI: 10.4025/actascibiolsci.v27i2.1350 Organization of the fish assemblages in streams of Iguatemi River basin, Mato Grosso do Sul State - DOI: 10.4025/actascibiolsci.v27i2.1350

    Directory of Open Access Journals (Sweden)

    Miguel Petrere Junior

    2005-03-01

    Full Text Available Como o objetivo de descrever os padrões de organização das comunidades de peixes em riachos da bacia do rio Iguatemi amostramos riachos com redes de espera e de arrasto no período de novembro/1999 a agosto/2000. Coletamos 567 indivíduos distribuídos em 24 espécies. Constatamos influência significativa das características dos riachos sobre a diversidade de espécies. A composição de espécies foi pouco explicada pelas características dos riachos. Verificamos influência significativa da morfologia na distribuição em ocorrência das espécies (Mantel r = -0,34; P = 0,04, mas não na distribuição em sua abundância (Mantel r = -0,21; P = 0,07. Comprovamos através do índice de co-ocorrência (C-score das espécies que sua composição nos riachos estudados é estocásticaAiming to describe the patterns of the fish assemblages organization in streams of the Iguatemi River basin we sampled streams with seine nets and sieves from November/1999 to August/2000. We collected 567 individuals distributed in 24 species. We detected statistically significant influence of the streams characteristics upon species diversity. The species composition was hardly explained by the physical and chemical characteristics of the streams. Then we detected significant influence of the fish ecomorphology in the species occurrence (Mantel r = -0,34; P = 0,04, but not in the distribution of its abundance (Mantel r = -0,21; P = 0,07. We verified through the species co-occurrence index (C-score that its composition in the studied streams is stochastic

  16. Quantification of diatoms in biofilms: Standardisation of methods

    Digital Repository Service at National Institute of Oceanography (India)

    Patil, J.S.; Anil, A.C.

    of the difficulty in sampling and enumeration. Scraping or brushing are the traditional methods used for removal of diatoms from biofilms developed on solid substrata. The method of removal is the most critical step in enumerating the biofilm diatom community...

  17. 9 Records of Diatoms and Physicochemical.cdr

    African Journals Online (AJOL)

    Administrator

    between some physicochemical parameters and diatom species in these ponds. ..... Diversity and relative abundance (%) of diatoms species in selected seasonal ponds in Zaria, Nigeria ..... connection with reference conditions of the water.

  18. Preparation and method of study of fossil diatoms

    Digital Repository Service at National Institute of Oceanography (India)

    Setty, M.G.A.P.

    Two methods of chemical concentration of diatoms occurring in fresh-water sediments, and one chemico-mechanical method of concentration for diatoms occurring in marine sediments are outlined, with emphasis on the extreme care that needs...

  19. Centennial-scale variations in diatom productivity off Peru over the last 3000 years

    Science.gov (United States)

    Fleury, Sophie; Crosta, Xavier; Schneider, Ralph; Blanz, Thomas; Ther, Olivier; Martinez, Philippe; Kim, Jung-Hyun

    2016-04-01

    The Peruvian coastal upwelling is one of the most productive systems in the global ocean, with important impacts on the carbon cycle. Primary productivity there displays strong variations at the inter-annual to decadal timescales. However, down-core investigations rarely reach sufficient temporal resolution to assess the response of productivity to climatic variations at these timescales beyond the instrumental and historical periods. We here analyzed diatom assemblages, sea-surface temperatures, nitrogen and organic carbon contents on a laminated sediment core from the Peruvian continental shelf to trace variations in regional productivity over the last 3000 years. Our record provides evidence for different climatic and oceanic conditions with more humid and less productive conditions older than 2500 Cal years BP and drier and more productive conditions younger than 2500 Cal years BP. The last 2500 years also present much stronger centennial-scale variability with the occurrence of six intervals with higher total diatom abundances and stronger percentages in upwelling-related diatom species, representative of intensified productivity, congruent to lower percentages in benthic diatoms, indicative of reduced rainfall. These six periods were synchronous to intervals of enhanced Walker circulation, suggesting a strong imprint of the Pacific zonal circulation on productivity variations off Peru. Our record also demonstrates that SSTs did not vary in phase with productivity, arguing against the idea of regional SSTs controlled by the upwelling intensity, but were rather in agreement to SST records off southern Chile, suggesting that Peruvian SSTs variations were largely controlled by oceanic currents at southern high latitudes.

  20. Diatoms: a fossil fuel of the future.

    Science.gov (United States)

    Levitan, Orly; Dinamarca, Jorge; Hochman, Gal; Falkowski, Paul G

    2014-03-01

    Long-term global climate change, caused by burning petroleum and other fossil fuels, has motivated an urgent need to develop renewable, carbon-neutral, economically viable alternatives to displace petroleum using existing infrastructure. Algal feedstocks are promising candidate replacements as a 'drop-in' fuel. Here, we focus on a specific algal taxon, diatoms, to become the fossil fuel of the future. We summarize past attempts to obtain suitable diatom strains, propose future directions for their genetic manipulation, and offer biotechnological pathways to improve yield. We calculate that the yields obtained by using diatoms as a production platform are theoretically sufficient to satisfy the total oil consumption of the US, using between 3 and 5% of its land area. Copyright © 2014 Elsevier Ltd. All rights reserved.

  1. Streams with Strahler Stream Order

    Data.gov (United States)

    Minnesota Department of Natural Resources — Stream segments with Strahler stream order values assigned. As of 01/08/08 the linework is from the DNR24K stream coverages and will not match the updated...

  2. paleoenvironmental settings and assemblage changes

    African Journals Online (AJOL)

    Kasanzu

    shallow borehole drilled in the southern coastal basin of Tanzania with the aim of characterizing foraminifera and palynomorphs assemblage changes aiming at reconstructing ..... decline in temperature at EOT which caused the extinction of ...

  3. Effects of Water Level Increase on Phytoplankton Assemblages in a Drinking Water Reservoir

    Directory of Open Access Journals (Sweden)

    Yangdong Pan

    2018-03-01

    Full Text Available Excessive water level fluctuation may affect physico-chemical characteristics, and consequently ecosystem function, in lakes and reservoirs. In this study, we assessed the changes of phytoplankton assemblages in response to water level increase in Danjiangkou Reservoir, one of the largest drinking water reservoirs in Asia. The water level increased from a low of 137 m to 161 m in 2014 as a part of the South–North Water Diversion Project. Phytoplankton assemblages were sampled four times per year before, during and after the water level increase, at 10 sites. Environmental variables such as total nitrogen as well as phytoplankton biomass decreased after the water level increase. Non-metric multi-dimensional scaling analysis indicated that before the water level increase, phytoplankton assemblages showed distinct seasonal variation with diatom dominance in both early and late seasons while such seasonal variation was much less evident after the water level increase. Month and year (before and after explained 13% and 6% of variance in phytoplankton assemblages (PERMANOVA, p < 0.001 respectively, and phytoplankton assemblages were significantly different before and after the water level increase. Both chlorophytes and cyanobacteria became more abundant in 2015. Phytoplankton compositional change may largely reflect the environmental changes, such as hydrodynamics mediated by the water level increase.

  4. Variations in diatom communities at genus and species levels in peatlands (central China) linked to microhabitats and environmental factors.

    Science.gov (United States)

    Chen, Xu; Bu, Zhaojun; Stevenson, Mark A; Cao, Yanmin; Zeng, Linghan; Qin, Bo

    2016-10-15

    Peatlands are a specialized type of organic wetlands, fulfilling essential roles as global carbon sinks, headwaters of rivers and biodiversity hotspots. Despite their importance, peatlands are being lost at an alarming rate due to human disturbance and climatic variability. Both the scientific and regulatory communities have focused considerable attention on developing tools for assessing environmental changes in peatlands. Diatoms are widely used in biomonitoring studies of lakes, rivers and streams as they have high abundance, specific ecological preferences and can respond rapidly to environmental change. However, diatom-based assessment studies in peatlands remain limited. The aims of this study were to identify indicator species and genus for three types of habitats (hummocks, hollows and ditch edges) in peatlands (central China), to examine the effects of physiochemical factors on diatom composition at genus and species levels, and to compare the efficiency of species- and genus-level identification in environmental assessment. Our results revealed that hummocks were characterized by drought-tolerant diatoms, while hollows were dominated by species and genus preferring wet conditions. Ditch edges were characterized by diatoms with different life strategies. Depth to water table, redox potential, conductivity and calcium were significant predictors of both genus- and species-level composition. According to ordination analyses, pH was not correlated with species composition while it was a significant factor associated with genus-level composition. Genus-level composition outperformed species composition in describing the response of diatoms to environmental variables. Our results indicate that diatoms can be useful environmental indicators of peatlands, and show that genus-level taxonomic analysis can be a potential tool for assessing environmental change in peatlands. Copyright © 2016 Elsevier B.V. All rights reserved.

  5. Diatoms in Liyu Lake, Eastern Taiwan

    Directory of Open Access Journals (Sweden)

    Liang-Chi Wang

    2010-09-01

    Full Text Available This study described the diatoms appeared in the sediments of Liyu Lake, a lowland natural lake situated at Hualen, eastern Taiwan. A total of 50 species was found in the sediments of this eutrophic lake. In them, 8 species were reported for the first time in Taiwan. They are: Cymbella thienemannii, Navicula absoluta, Navicula bacillum, Frustulia rhomboides var. crassinervia, Gyrosigma procerum, Nitzschia paleacea Epithemia smithii and Eunotia subarcuatioides. The ultrastructures of each species were described on the basis of observations under a scanning electron microscope. The ecological implications of the occurrence of these diatom species in this lake were inferred.

  6. Role of riparian shade on the fish assemblage of a reservoir littoral

    Science.gov (United States)

    Raines, C. D.; Miranda, Leandro E.

    2016-01-01

    Research into the effects of shade on reservoir fish assemblages is lacking, with most investigations focused on streams. Unlike many streams, the canopy in a reservoir shades only a narrow fringe of water adjacent to the shoreline, and may not have the influential effect on the aquatic environment reported in streams. We compared fish assemblages between shaded and unshaded sites in a shallow reservoir. Overall species richness (gamma diversity) was higher in shaded sites, and fish assemblage composition differed between shaded and unshaded sites. Average light intensity was 66 % lower in shaded sites, and differences in average temperature and dissolved oxygen were small. Unlike streams where shade can have large effects on water physicochemistry, in reservoirs shade-related differences in fish assemblages seemed to be linked principally to differences in light intensity. Diversity in light intensity in shaded and unshaded sites in reservoirs can create various mosaics of light-based habitats that enable diversity of species assemblages. Managing to promote the habitat diversity provided by shade may require coping with the artificial nature of reservoir riparian zones and water level fluctuations.

  7. The health of benthic diatom assemblages in lower stretch of a ...

    Indian Academy of Sciences (India)

    Louis Leclercq index indicated that organic pollution was nonexistent, while the anthro- pogenic eutrophication ... of all dimensions) and hydropower development along the ... river eroded the banks and devastated the human habitations and ...

  8. Effects of solar UV radiation on diatom assemblages of the Mediterranean

    International Nuclear Information System (INIS)

    Santas, Regas; Lianou, Charalambia; Haeder, D.-P.

    1996-01-01

    Three UV treatments (PAR; PAR + UVA; PAR + UVA + UVB) were performed by placing different UV-absorbing filters over communities developing on ceramic tiles in a natural marine habitat near Korinthos, Greece. The experiment was repeated at three depths (0.5 m, 1 m, 1.5 m) below the surface of the sea. Differences in community structure due to UV radiation exposure were more pronounced during the early stages of community development. After the first 3 weeks of growth, the productivity of the PAR + UVA + UVB treatment was significantly lower than the PAR + UVA but not than the PAR treatment. This difference did not persist thereafter. At 5 weeks of growth, the productivity at 0.5 m was significantly lower than at 1.0 m. No other significant differences were observed. The findings of the present study suggest that periphytic communities occurring at the upper layers of the euphotic zone may be capable of adjusting to changes in environmental stresses such as by increased solar UVB irradiance. (Author)

  9. Epibiotic Diatoms Are Universally Present on All Sea Turtle Species

    Science.gov (United States)

    Majewska, Roksana; Lazo-Wasem, Eric A.; Nel, Ronel; Paladino, Frank V.; Rojas, Lourdes; Zardus, John D.; Pinou, Theodora

    2016-01-01

    The macro-epibiotic communities of sea turtles have been subject to growing interest in recent years, yet their micro-epibiotic counterparts are almost entirely unknown. Here, we provide the first evidence that diatoms are epibionts for all seven extant species of sea turtle. Using Scanning Electron Microscopy, we inspected superficial carapace or skin samples from a single representative of each turtle species. We distinguished 18 diatom taxa from these seven individuals, with each sea turtle species hosting at least two diatom taxa. We recommend that future research is undertaken to confirm whether diatom communities vary between sea turtle species and whether these diatom taxa are facultative or obligate commensals. PMID:27257972

  10. Electron transport through a diatomic molecule

    International Nuclear Information System (INIS)

    Imran, Muhammad

    2014-01-01

    Electron transport through a diatomic molecular tunnel junction shows wave like interference phenomenon. By using Keldysh non-equilibrium Green's function (NEGF) theory, we have explicitly presented current and differential conductance calculation for a diatomic molecular and two isolated atoms (two atoms having zero hybridization between their energy orbitals) tunnel junctions. In case of a diatomic molecular tunnel junction, Green's function propagators entering into current and differential conductance formula interfere constructively for a molecular anti-bonding state and destructively for bonding state. Consequently, conductance through a molecular bonding state is suppressed, and to conserve current, conductance through anti-bonding state is enhanced. Therefore, current steps and differential conductance peaks amplitude show asymmetric correspondence between molecular bonding and anti-bonding states. Interestingly, for a diatomic molecule, comprising of two atoms of same energy level, these propagators interfere completely destructively for molecular bonding state and constructively for molecular anti-bonding state. Hence under such condition, a single step or a single peak is shown up in current versus voltage or differential conductance versus voltage studies.

  11. Genetic and metabolic engineering in diatoms.

    Science.gov (United States)

    Huang, Weichao; Daboussi, Fayza

    2017-09-05

    Diatoms have attracted considerable attention due to their success in diverse environmental conditions, which probably is a consequence of their complex origins. Studies of their metabolism will provide insight into their adaptation capacity and are a prerequisite for metabolic engineering. Several years of investigation have led to the development of the genome engineering tools required for such studies, and a profusion of appropriate tools is now available for exploring and exploiting the metabolism of these organisms. Diatoms are highly prized in industrial biotechnology, due to both their richness in natural lipids and carotenoids and their ability to produce recombinant proteins, of considerable value in diverse markets. This review provides an overview of recent advances in genetic engineering methods for diatoms, from the development of gene expression cassettes and gene delivery methods, to cutting-edge genome-editing technologies. It also highlights the contributions of these rapid developments to both basic and applied research: they have improved our understanding of key physiological processes; and they have made it possible to modify the natural metabolism to favour the production of specific compounds or to produce new compounds for green chemistry and pharmaceutical applications.This article is part of the themed issue 'The peculiar carbon metabolism in diatoms'. © 2017 The Author(s).

  12. A Quantitative Proxy for Sea-Ice Based on Diatoms: A Cautionary Tale.

    Science.gov (United States)

    Nesterovich, A.; Caissie, B.

    2016-12-01

    Sea ice in the Polar Regions supports unique and productive ecosystems, but the current decline in the Arctic sea ice extent prompts questions about previous sea ice declines and the response of ice related ecosystems. Since satellite data only extend back to 1978, the study of sea ice before this time requires a proxy. Being one of the most productive, diatom-dominated regions in the world and having a wide range of sea ice concentrations, the Bering and Chukchi seas are a perfect place to find a relationship between the presence of sea ice and diatom community composition. The aim of this work is to develop a diatom-based proxy for the sea ice extent. A total of 473 species have been identified in 104 sediment samples, most of which were collected on board the US Coast Guard Cutter Healy ice breaker (2006, 2007) and the Norseman II (2008). The study also included some of the archived diatom smear slides made from sediments collected in 1969. The assemblages were compared to satellite-derived sea ice extent data averaged over the 10 years preceding the sampling. Previous studies in the Arctic and Antarctic regions demonstrated that the Generalized Additive Model (GAM) is one of the best choices for proxy construction. It has the advantage of using only several species instead of the whole assemblage, thus including only sea ice-associated species and minimizing the noise created by species responding to other environmental factors. Our GAM on three species (Connia compita, Fragilariopsis reginae-jahniae, and Neodenticula seminae) has low standard deviation, high level of explained variation, and holds under the ten-fold cross-validation; the standard residual analysis is acceptable. However, a spatial residual analysis revealed that the model consistently over predicts in the Chukchi Sea and under predicts in the Bering Sea. Including a spatial model into the GAM didn't improve the situation. This has led us to test other methods, including a non-parametric model

  13. Effects of pulsed nutrient inputs on phytoplankton assemblage structure and blooms in an enclosed coastal area

    Science.gov (United States)

    Spatharis, Sofie; Tsirtsis, George; Danielidis, Daniel B.; Chi, Thang Do; Mouillot, David

    2007-07-01

    The response of phytoplankton assemblage structure to terrestrial nutrient inputs was examined for the Gulf of Kalloni in the Northern Aegean Sea, a productive semi-enclosed coastal marine ecosystem. The study was focused on a typical annual cycle, and emphasis was placed on the comparative analysis between blooms developing after significant nutrient inputs from the watershed, and naturally occurring blooms. Baseline information was collected on a monthly basis from a network of stations located in the oligotrophic open sea and the interior and more productive part of the embayment. Intensive sampling was also carried out along a gradient in the vicinity of a river which was the most important source of freshwater and nutrient input for the Gulf. Phytoplankton assemblage structure was analyzed from 188 samples using diversity indices (Shannon and Average Taxonomic Distinctness), multivariate plotting methods (NMDS), multivariate statistics (PERMANOVA), and canonical correspondence analysis (CCA). Three characteristic assemblages were recognized: (1) an autumn assemblage developed under nutrient depleted conditions, having low diversity due to the dominance of two small diatoms, (2) a winter bloom of the potentially toxic species Pseudo-nitzschia calliantha occurring immediately after a nutrient peak and characterized by very low diversity, and (3) a naturally occurring early summer bloom of centric diatoms with relatively high diversity. The results of the study support the view that moderate nutrient inputs may have a beneficial effect on the functioning of coastal ecosystems, stimulating the taxonomic diversity through the growth of different taxonomic groups and taxa. On the other hand, a sudden pulse of high nutrient concentrations may greatly affect the natural succession of organisms, have a negative effect on the diversity through the dominance of a single species, and can increase the possibility of a harmful algal bloom development.

  14. Stream Crossings

    Data.gov (United States)

    Vermont Center for Geographic Information — Physical measurements and attributes of stream crossing structures and adjacent stream reaches which are used to provide a relative rating of aquatic organism...

  15. Protocol for Monitoring Fish Assemblages in Pacific Northwest National Parks

    Science.gov (United States)

    Brenkman, Samuel J.; Connolly, Patrick J.

    2008-01-01

    Rivers and streams that drain from Olympic, Mount Rainier, and North Cascades National Parks are among the most protected corridors in the lower 48 States, and represent some of the largest tracts of contiguous, undisturbed habitat throughout the range of several key fish species of the Pacific Northwest. These watersheds are of high regional importance as freshwater habitat sanctuaries for native fish, where habitat conditions are characterized as having little to no disturbance from development, channelization, impervious surfaces, roads, diversions, or hydroelectric projects. Fishery resources are of high ecological and cultural importance in Pacific Northwest National Parks, and significantly contribute to economically important recreational, commercial, and tribal fisheries. This protocol describes procedures to monitor trends in fish assemblages, fish abundance, and water temperature in eight rivers and five wadeable streams in Olympic National Park during summer months, and is based on 4 years of field testing. Fish assemblages link freshwater, marine, and terrestrial ecosystems. They also serve as focal resources of national parks and are excellent indicators of ecological conditions of rivers and streams. Despite the vital importance of native anadromous and resident fish populations, there is no existing monitoring program for fish assemblages in the North Coast and Cascades Network. Specific monitoring objectives of this protocol are to determine seasonal and annual trends in: (1) fish species composition, (2) timing of migration of adult fish, (3) relative abundance, (4) age and size structure, (5) extent of non-native and hatchery fish, and (6) water temperature. To detect seasonal and annual trends in fish assemblages in reference sites, we rely on repeated and consistent annual sampling at each monitoring site. The general rationale for the repeated sampling of reference sites is to ensure that we account for the high interannual variability in fish

  16. [Research advances in heavy metals pollution ecology of diatom].

    Science.gov (United States)

    Ding, Teng-Da; Ni, Wan-Min; Zhang, Jian-Ying

    2012-03-01

    Diatom, due to its high sensitivity to environmental change, is one of the bio-indicators of aquatic ecosystem health, and some typical diatom species have been applied to indicate the heavy metals pollution of water body. With the focus on the surface water heavy metals pollution, this paper reviewed the research advances in the toxic effect of heavy metals pollution on diatom, biosorption and bioaccumulation of heavy metals by diatom, ecological adaptation mechanisms of diatom to heavy metals pollution, and roles of diatom as bio-indicator and in ecological restoration of heavy metals pollution. The growth tendency of diatom and the morphological change of frustule under heavy metals pollution as well as the differences in heavy metals biosorption and bioaccumulation by diatom, the ecological adaptation mechanisms of diatom on heavy metals surface complexation and ion exchange, and the roles of diatom as bio-indicator and in ecological restoration of heavy metals polluted water body were also discussed. This review could provide scientific evidences for the prevention of aquatic ecosystems heavy metals pollution and related early warning techniques.

  17. Akamai Streaming

    OpenAIRE

    ECT Team, Purdue

    2007-01-01

    Akamai offers world-class streaming media services that enable Internet content providers and enterprises to succeed in today's Web-centric marketplace. They deliver live event Webcasts (complete with video production, encoding, and signal acquisition services), streaming media on demand, 24/7 Webcasts and a variety of streaming application services based upon their EdgeAdvantage.

  18. Diatomic infrared gas-dynamic laser

    International Nuclear Information System (INIS)

    Mckenzie, R.L.

    1971-01-01

    A laser is provided which utilizes the infrared vibration rotation transitions of a diatomic gas such as carbon monoxide. The laser action is produced by an active diatomic gas such as carbon monoxide mixed with a vibrationally resonant pumping gas such as nitrogen. In addition, a noble gas such as argon may be employed as a third gas in the mixture. The gas mixture contains from 1 to 80 vol percent of the active gas based on the pumping gas, and the third gas, if used, can constitute up to 90 percent of the total gas volume. A number of significantly different wavelengths can be produced by the laser. A single laser may contain several optical resonators at different locations, so that the desired wave length can be selected at will

  19. Approaches for identifying change in the abundance and historical distribution of a freshwater diatom

    Science.gov (United States)

    Spaulding, S. A.; Pite, D.; Wolfe, A. P.; Sundareshwar, P. V.

    2011-12-01

    The diatom Didymosphenia geminata (Bacillariophyta) has been considered native to high latitudes of the Northern Hemisphere. In recent years, this species has expanded its range to New Zealand and South America, forming large, invasive blooms in rivers. In contrast, historical populations in Alaska (Katmai National Park) have remained unchanged, while those in at least one Montana site have declined. In addition to a complex distributional history, this diatom has proven its remarkable ability to produce high amounts of biomass in low nutrient rivers. The high biomass is composed of the diatom cytoplasm and silica cell wall, but the high amounts of organic mater are mostly composed of extracellular mucopolysaccaride stalks. For example, in a low nutrient river, Lake Creek in Grand Teton National Park, the biovolume of D. geminata was estimated to be 57 m3 / km of stream, containing nearly 400 μg P / g stalk (dry weight). We examine the recent pattern of expansion of this species, the geochemical processes associated with the stalk, and paleolimnological record to 10,000 ybp to access the ecological factors that relate to the geographic distribution of this microscopic species on a regional and global scale.

  20. Live autochthonous benthic diatoms on the lower depths of Arctic continental shelf. Preliminary results

    Directory of Open Access Journals (Sweden)

    Elena Druzhkova

    2018-01-01

    Full Text Available An autochthonous community of benthic diatoms was discovered in June 2015 in the upper sediment layer at depths of 170, 205, and 245 m in the central Barents Sea. At least three benthic microalgae species (Gyrosigma fasciola, Pleurosigma angulatum, and Pleurosigma sp. 1 were detected in the sediment but not the upper water column. Analyses revealed that these benthic microalgae represent a depleted fragment of Arctic littoral microphytobenthos. Compared with the littoral flora, the deep-water assemblage is less diverse and displays low abundance. The data reported here challenge the generally accepted belief that the presence of certain microalgae at significant depths results from vertical or horizontal transfer.

  1. Silicon diatom frustules as nanostructured photoelectrodes.

    Science.gov (United States)

    Chandrasekaran, Soundarrajan; Sweetman, Martin J; Kant, Krishna; Skinner, William; Losic, Dusan; Nann, Thomas; Voelcker, Nicolas H

    2014-09-18

    In the quest for solutions to meeting future energy demands, solar fuels play an important role. A particularly promising example is photocatalysis since even incremental improvements in performance in this process are bound to translate into significant cost benefits. Here, we report that semiconducting and high surface area 3D silicon replicas prepared from abundantly available diatom fossils sustain photocurrents and enable solar energy conversion.

  2. Collision-induced dissociation of diatomic ions

    International Nuclear Information System (INIS)

    Los, J.; Govers, T.R.

    1978-01-01

    An attempt is made to illustrate how mass spectrometric studies of dissociation in diatomic molecular ions can provide information on the dynamics of these collisions and on the predissociative states involved. Restriction is made to primary beam energies of the order of at least keV. The review covers the dynamics of dissociation, experimental techniques, direct dissociation in heavy-particle collisions, and translational spectroscopy. 120 references

  3. Electric dipole moment of diatomic molecules

    International Nuclear Information System (INIS)

    Rosato, A.

    1983-01-01

    The electric dipole moment of some diatomic molecules is calculated using the Variational Cellular Method. The results obtained for the molecules CO, HB, HF and LiH are compared with other calculations and with experimental data. It is shown that there is strong dependence of the electric dipole moment with respect to the geometry of the cells. It is discussed the possibility of fixing the geometry of the problem by giving the experimental value of the dipole moment. (Author) [pt

  4. Electric dipole moment of diatomic molecules

    International Nuclear Information System (INIS)

    Rosato, A.

    1983-01-01

    The electric dipole moment of some diatomic molecules is calculated using the Variational Cellular Method. The results obtained for the CO, HB, HF and LiH molecules are compared with other calculations and with experimental data. It is shown that there is strong dependence of the electric dipole moment with respect to the geometry of the cells. The possibility of fixing the geometry of the problem by giving the experimental value of the dipole moment is discussed. (Author) [pt

  5. Distribution, abundance, and diversity of stream fishes under variable environmental conditions

    Science.gov (United States)

    Christopher M. Taylor; Thomas L. Holder; Richard A. Fiorillo; Lance R. Williams; R. Brent Thomas; Melvin L. Warren

    2006-01-01

    The effects of stream size and flow regime on spatial and temporal variability of stream fish distribution, abundance, and diversity patterns were investigated. Assemblage variability and species richness were each significantly associated with a complex environmental gradient contrasting smaller, hydrologically variable stream localities with larger localities...

  6. Environmental and Spatial Influences on Biogeography and Community Structure of Benthic Diatoms

    Science.gov (United States)

    Plante, C.; Hill-Spanik, K.; Lowry, J.

    2016-02-01

    Several theoretical and practical reasons suggest that benthic microalgae could be useful bioindicators. For instance, an ideal indicator species or community would be associated with a given habitat due to local physical conditions or biotic interactions (i.e., `environmental filtering'), not due to dispersal limitation. Due to their small size, immense abundances, and reliance on passive dispersal, the popular notion about micro-organisms is that `Everything is everywhere, but, the environment selects' (Baas-Becking 1934). Although much recent research concerning planktonic bacteria and dispersal limitation has been conducted, very little in this regard is known about microeukaryotes, especially benthic microbes. The purpose of our study was to identify and compare spatial and environmental influences on benthic diatom community structure and biogeography. In summer 2015, sediment was sampled at various spatial scales from four barrier island beaches in South Carolina, USA, and high-throughput (Ion Torrent) DNA sequencing was used to characterize diatom assemblages. ANOSIM and principal coordinates analysis revealed that communities were statistically distinct on the four islands. Community dissimilarity was compared to both spatial distance and environmental differences to determine potential influences of these variables on community structure. We found that geographic distance had the strongest correlation with community similarity, with and without one anomalous location, while differences in temperature (air, water, and sediment), nutrients, organic matter, and turbidity also had significant but weaker relationships with community structure. Surprisingly, air temperature, which changes on very short time scales, appeared to be the environmental factor most strongly related to diatom species composition, potentially implicating some unmeasured variable (e.g., cloud cover). However, we also found that temperature and geographic distance were strongly

  7. Monsoonal and fertility contols on recent marginal sea and continental shelf coccolith assemblages from the western Pacific and northern Indian Oceans

    Digital Repository Service at National Institute of Oceanography (India)

    Houghton, S.D.; Guptha, M.V.S.

    Gill, 1973). These nutrient-enriched surface waters support large blooms of the diatom Rhizo- solenia (Nair et al., 1989). High fluxes of carbonate, mainly coccolithophorids with some foraminifera, are associated with the monsoons. High levels.... In the low-latitude Pacific Ocean, high abun- dances of E. huxleyi (>40%) are generally re- stricted to assemblages beneath waters of low to medium fertility; these areas include the East Pacific Rise (near the Galapogos Islands), and below the central...

  8. Comparing Ecological and Genetic Diversity Within the Marine Diatom Genus Pseudo-nitzschia: A Multiregional Synthesis

    Science.gov (United States)

    Hubbard, K.; Bruzek, S.

    2016-02-01

    The globally distributed marine diatom genus Pseudo-nitzschia consists of approximately 40 species, more than half of which occur in US coastal waters. Here, sensitive genetic tools targeting a variable portion of the internal transcribed spacer 1 (ITS1) region of the rRNA gene were used to assess Pseudo-nitzschia spp. diversity in more than 600 environmental DNA samples collected from US Atlantic, Pacific, and Gulf of Mexico waters. Community-based approaches employed genus-specific primers for environmental DNA fingerprinting and targeted sequencing. For the Gulf of Mexico samples especially, a nested PCR approach (with or without degenerate primers) improved resolution of species diversity. To date, more than 40 unique ITS1 amplicon sizes have been repeatedly observed in ITS1 fingerprints. Targeted sequencing of environmental DNA as well as single chains isolated from live samples indicate that many of these represent novel and known inter- and intra-specific Pseudo-nitzschia diversity. A few species (e.g., P. pungens, P. cuspidata) occur across all three regions, whereas other species and intraspecific variants occurred at local to regional spatial scales only. Generally, species frequently co-occur in complex assemblages, and transitions in Pseudo-nitzschia community composition occur seasonally, prior to bloom initiation, and across (cross-shelf, latitudinal, and vertical) environmental gradients. These observations highlight the dynamic nature of diatom community composition in the marine environment and the importance of classifying diversity at relevant ecological and/or taxonomic scales.

  9. Applications of Diatoms as Potential Microalgae in Nanobiotechnology

    OpenAIRE

    Ahmad Yari Khosroushahi; Miguel de la Guardia; Mohamad Moradi Ghorakhlu; Ali Akbar Jamali; Fariba Akbari

    2012-01-01

    Introduction: Diatoms are single cell eukaryotic microalgae, which present in nearly every water habitat make them ideal tools for a wide range of applications such as oil explora­tion, forensic examination, environmental indication, biosilica pattern generation, toxicity testing and eutrophication of aqueous ecosystems. Methods: Essential information on diatoms were reviewed and discussed towards impacts of diatoms on biosynthesis and bioremediation. Results: In this review, we present the ...

  10. Diatom flora in subterranean ecosystems: a review

    Directory of Open Access Journals (Sweden)

    Elisa Falasco

    2014-09-01

    Full Text Available In scarcity of light and primary producers, subterranean ecosystems are generally extremely oligotrophic habitats, receiving poor supplies of degradable organic matter from the surface. Human direct impacts on cave ecosystems mainly derive from intensive tourism and recreational caving, causing important alterations to the whole subterranean environment. In particular, artificial lighting systems in show caves support the growth of autotrophic organisms (the so-called lampenflora, mainly composed of cyanobacteria, diatoms, chlorophytes, mosses and ferns producing exocellular polymeric substances (EPSs made of polysaccharides, proteins, lipids and nucleic acids. This anionic EPSs matrix mediates to the intercellular communications and participates to the chemical exchanges with the substratum, inducing the adsorption of cations and dissolved organic molecules from the cave formations (speleothems. Coupled with the metabolic activities of heterotrophic microorganisms colonising such layer (biofilm, this phenomenon may lead to the corrosion of the mineral surfaces. In this review, we investigate the formation of biofilms, especially of diatom-dominated ones, as a consequence of artificial lighting and its impacts on speleothems. Whenever light reaches the subterranean habitat (both artificially and naturally a relative high number of species of diatoms may indeed colonise it. Cave entrances, artificially illuminated walls and speleothems inside the cave are generally the preferred substrates. This review focuses on the diatom flora colonising subterranean habitats, summarizing the information contained in all the scientific papers published from 1900 up to date. In this review we provide a complete checklist of the diatom taxa recorded in subterranean habitats, including a total of 363 taxa, belonging to 82 genera. The most frequent and abundant species recorded in caves and other low light subterranean habitats are generally aerophilic and

  11. Diatom evidence for the onset of Pliocene cooling from AND-1B, McMurdo Sound, Antarctica

    Science.gov (United States)

    Riesselman, Christina; Dunbar, R. B.

    2013-01-01

    The late Pliocene, ~ 3.3–3.0 Ma, is the most recent interval of sustained global warmth in the geologic past. This window is the focus of climate reconstruction efforts by the U.S. Geological Survey's Pliocene Research, Interpretation, and Synoptic Mapping (PRISM) Data/Model Cooperative, and may provide a useful climate analog for the coming century. Reconstructions of past surface ocean conditions proximal to the Antarctic continent are essential to understanding the sensitivity of the cryosphere to this key interval in Earth's climate evolution. An exceptional marine sediment core collected from the southwestern Ross Sea (78° S), Antarctica, during ANDRILL's McMurdo Ice Shelf Project preserves evidence of dramatic fluctuations between grounded ice and productive, open ocean conditions during the late Pliocene, reflecting orbitally-paced glacial/interglacial cycling. In this near-shore record, diatom-rich sediments are recovered from interglacial intervals; two of these diatomites, from ~ 3.2 Ma and 3.03 Ma, are within the PRISM chronologic window. The diatom assemblages identified in PRISM-age late Pliocene diatom-rich sediments are distinct from those in mid-Pliocene and later Pliocene/Pleistocene intervals recovered from AND-1B, and comprise both extant taxa with well-constrained ecological preferences and a diverse extinct flora, some members of which are previously undescribed from Antarctic sediments. Both units are dominated by Chaetoceros resting spores, an indicator of high productivity and stratification that is present at much lower abundance in materials both older and younger than the PRISM-age sediments. Newly described species of the genus Fragilariopsis, which first appear in the AND-1B record at 3.2 Ma, are the most abundant extinct members of the PRISM-age assemblages. Other extant species with established environmental affinities, such as Fragilariopsis sublinearis, F. curta, Stellarima microtrias, and Thalassiothrix antarctica, are

  12. Environmental changes induced by human activities in the Northern Curonian Lagoon (Eastern Baltic: diatoms and stable isotope data

    Directory of Open Access Journals (Sweden)

    Giedrė Vaikutienė

    2017-05-01

    Full Text Available A sediment core collected from the northwestern part of the Curonian Lagoon, which was deposited approximately during 1800-2002, was analysed for several proxy records. Changes in diatom assemblages and carbon, nitrogen and oxygen stable isotopes (δ13C, δ15N and δ18O revealed two periods, which are characterized by differences in the sedimentation rate, sediment type and trophic state of the northern part of the Curonian Lagoon. Low δ15N values in organics and prevailing fresh-brackish benthic diatoms indicate low enrichment in the shallow, freshwater lagoon during the period 1800-1955. The eutrophic conditions in this shallow lagoon are reflected by a high abundance of planktonic diatoms common in nutrient-rich basins and increased d15N values in organics of the sediments since 1955. Starting approximately in the 1960s, decreased freshwater run-off and increased brackish-water inflow into the lagoon were observed. These changes were likely caused by the construction of the hydropower station (and a reservoir near the Nemunas River and the artificial deepening of the Klaipėda Strait during 1960-1962 and later, also by the rising sea level in the SE Baltic. The changed river run-off and the artificially deepened strait significantly influenced the fresh-brackish water circulation and environmental conditions in the northern part of the Curonian Lagoon in the last decades.

  13. Seasonal variations in fouling diatom communities on the Yantai coast

    Science.gov (United States)

    Yang, Cuiyun; Wang, Jianhua; Yu, Yang; Liu, Sujing; Xia, Chuanhai

    2015-03-01

    Fouling diatoms are a main component of biofilm, and play an important role in marine biofouling formation. We investigated seasonal variations in fouling diatom communities that developed on glass slides immersed in seawater, on the Yantai coast, northern Yellow Sea, China, using microscopy and molecular techniques. Studies were conducted during 2012 and 2013 over 3, 7, 14, and 21 days in each season. The abundance of attached diatoms and extracellular polymeric substances increased with exposure time of the slides to seawater. The lowest diatom density appeared in winter and the highest species richness and diversity were found in summer and autumn. Seasonal variation was observed in the structure of fouling diatom communities. Pennate diatoms Cylindrotheca, Nitzschia, Navicula, Amphora, Gomphonema, and Licmophora were the main fouling groups. Cylindrotheca sp. dominated in the spring. Under laboratory culture conditions, we found that Cylindrotheca grew very fast, which might account for the highest density of this diatom in spring. The lower densities in summer and autumn might result from the emergence of fouling animals and environmental factors. The Cylindrotheca sp. was identified as Cylindrotheca closterium using18S rDNA sequencing. The colonization process of fouling diatoms and significant seasonal variation in this study depended on environmental and biological factors. Understanding the basis of fouling diatoms is essential and important for developing new antifouling techniques.

  14. Inorganic carbon availability in benthic diatom communities: photosynthesis and migration.

    Science.gov (United States)

    Marques da Silva, Jorge; Cruz, Sónia; Cartaxana, Paulo

    2017-09-05

    Diatom-dominated microphytobenthos (MPB) is the main primary producer of many intertidal and shallow subtidal environments, being therefore of critical importance to estuarine and coastal food webs. Owing to tidal cycles, intertidal MPB diatoms are subjected to environmental conditions far more variable than the ones experienced by pelagic diatoms (e.g. light, temperature, salinity, desiccation and nutrient availability). Nevertheless, benthic diatoms evolved adaptation mechanisms to these harsh conditions, including the capacity to move within steep physical and chemical gradients, allowing them to perform photosynthesis efficiently. In this contribution, we will review present knowledge on the effects of dissolved inorganic carbon (DIC) availability on photosynthesis and productivity of diatom-dominated MPB. We present evidence of carbon limitation of photosynthesis in benthic diatom mats and highly productive MPB natural communities. Furthermore, we hypothesize that active vertical migration of epipelic motile diatoms could overcome local depletion of DIC in the photic layer, providing the cells alternately with light and inorganic carbon supply. The few available longer-term experiments on the effects of inorganic carbon enrichment on the productivity of diatom-dominated MPB have yielded inconsistent results. Therefore, further studies are needed to properly assess the response of MPB communities to increased CO 2 and ocean acidification related to climate change.This article is part of the themed issue 'The peculiar carbon metabolism in diatoms'. © 2017 The Author(s).

  15. Epipelic Diatoms as Indicators of Water Quality in the Lower Part of River Melet (Ordu, Türkiye

    Directory of Open Access Journals (Sweden)

    Beyhan Taş

    2015-07-01

    Full Text Available Phytobenthos includes bioindicator species and is widely used in water ecology studies. Diatoms constitute one of the most important groups of phytobenthos in streams. In particular, these organisms are good indicators in investigations related with determining of water quality in medium and long time. In this study, the epipelic diatom flora of the lower part of River Melet were investigated, the most important source of drinking water in Ordu city. The examination was performed periodically in March-November 2012 and total of 56 taxa were identified. Cymbellales (14 taxa and Naviculales (16 taxa ordo constituted 54% of diatom diversity. These were followed by Fragilariales (16%, 9 taxa Bacillariales (14%, 8 taxa Surirellales (9%, 5 taxa Achnanthales (3%, 2 taxa Eunotiales (2%, 1 taxa and Melosirales (2%, 1 taxa, respectively. Diatome vulgaris, Melosira varians, Navicula gregaria, N. tripunctata and Nitzschia sigmoidea species were recorded as widespread and intense in the epipelic communities. These species are usually tolerant to organic pollution and are found in β-α- mesosaprobic conditions. According to the obtained results, the lower part of the Melet River has character from pollution towards moderate pollution. In other words, it has II-III. class water quality.

  16. Transparent Exopolymeric Particles (TEP Selectively Increase Biogenic Silica Dissolution From Fossil Diatoms as Compared to Fresh Diatoms

    Directory of Open Access Journals (Sweden)

    Jordan Toullec

    2018-03-01

    Full Text Available Diatom production is mainly supported by the dissolution of biogenic silica (bSiO2 within the first 200 m of the water column. The upper oceanic layer is enriched in dissolved and/or colloidal organic matter, such as exopolymeric polysaccharides (EPS and transparent exopolymeric particles (TEP excreted by phytoplankton in large amounts, especially at the end of a bloom. In this study we explored for the first time the direct influence of TEP-enriched diatom excretions on bSiO2 dissolution. Twelve dissolution experiments on fresh and fossil diatom frustules were carried out on seawater containing different concentrations of TEP extracted from diatom cultures. Fresh diatom frustules were cleaned from the organic matter by low ash temperature, and fossil diatoms were made from diatomite powder. Results confirm that newly formed bSiO2 dissolved at a faster rate than fossil diatoms due to a lower aluminum (Al content. Diatom excretions have no effect on the dissolution of the newly formed bSiO2 from Chaetoceros muelleri. Reversely, the diatomite specific dissolution rate constant and solubility of the bSiO2 were positively correlated to TEP concentrations, suggesting that diatom excretion may provide an alternative source of dSi when limitations arise.

  17. Public Sphere as Digital Assemblage

    DEFF Research Database (Denmark)

    Salovaara-Moring, Inka

    the 1990s onwards digitalization brought concepts of network and complexity into the theoretical discourse. This relational turn changed the social ontology of the public sphere into a dynamic and complex system, erasing the division between the fields of reality (the world), representation (discourse......Normative theories of public sphere have struggled with the topic of materiality. The historical narrative of the ‘public sphere’ situated the phenomenon in specific spaces, where practices (public deliberation) and language (discourse) constructed political agencies, and further publics. From......), and subjectivity (agency). This changed the public sphere into an assemblage consisting of both human and non-human actors interactingin a highly dynamic, networked environment. This paper proposes a framework for considering this new materiality in the field of the public sphere: the assemblage and complexity...

  18. GEOMORPHOLOGY AND ANTHROPOGENIC INFLUENCES ON FISH AND AMPHIBIANS IN PACIFIC NORTHWEST COASTAL STREAMS

    Science.gov (United States)

    Physical habitat degradation has been implicated as a major contributor to the historic decline of salmonids in Pacific Northwest streams. Native aquatic vertebrate assemblages in the Oregon and Washington Coast Range consist primarily of coldwater salmonids, cottids, and amphib...

  19. URBANIZATION ALTERS FATTY ACID CONCENTRATIONS OF STREAM FOOD WEBS IN THE NARRAGANSETT BAY WATERSHED

    Science.gov (United States)

    Urbanization and associated human activities negatively affect stream algal and invertebrate assemblages, likely altering food webs. Our goal was to determine if urbanization affects food web essential fatty acids (EFAs) and if EFAs could be useful ecological indicators in monito...

  20. Diatom community structure on in-service cruise ship hulls.

    Science.gov (United States)

    Hunsucker, Kelli Zargiel; Koka, Abhishek; Lund, Geir; Swain, Geoffrey

    2014-10-01

    Diatoms are an important component of marine biofilms found on ship hulls. However, there are only a few published studies that describe the presence and abundance of diatoms on ships, and none that relate to modern ship hull coatings. This study investigated the diatom community structure on two in-service cruise ships with the same cruise cycles, one coated with an antifouling (AF) system (copper self-polishing copolymer) and the other coated with a silicone fouling-release (FR) system. Biofilm samples were collected during dry docking from representative areas of the ship and these provided information on the horizontal and vertical zonation of the hull, and intact and damaged coating and niche areas. Diatoms from the genera Achnanthes, Amphora and Navicula were the most common, regardless of horizontal ship zonation and coating type. Other genera were abundant, but their presence was more dependent on the ship zonation and coating type. Samples collected from damaged areas of the hull coating had a similar community composition to undamaged areas, but with higher diatom abundance. Diatom fouling on the niche areas differed from that of the surrounding ship hull and paralleled previous studies that investigated differences in diatom community structure on static and dynamically exposed coatings; niche areas were similar to static immersion and the hull to dynamic immersion. Additionally, diatom richness was greater on the ship with the FR coating, including the identification of several new genera to the biofouling literature, viz. Lampriscus and Thalassiophysa. These results are the first to describe diatom community composition on in-service ship hulls coated with a FR system. This class of coatings appears to have a larger diatom community compared to copper-based AF systems, with new diatom genera that have the ability to stick to ship hulls and withstand hydrodynamic forces, thus creating the potential for new problematic species in the biofilm.

  1. Role of Diatoms in marine biofouling

    Digital Repository Service at National Institute of Oceanography (India)

    Anil, A; Patil, J.S..; Mitbavkar, S.; DeCosta, P.M.; DeSilva, S.; Hegde, S.; Naik, R.

    . Ltd., New Delhi, pp. 293-6. de Nys, R., Leya, T., Maximilien, R., Afsar, A., Nair, P. S. R. & Steinberg, P. D. 1996. The need for standardized broad scale bioassay testing: a case study using the red alga Laurencia rigida. Biofouling 10:213-24. de...-1 Content-Type text/plain; charset=ISO-8859-1 Recent Advances on Applied Aspects of Indian Marine Algae with Reference to Global Scenario, Volume 1, A. Tewari (Ed.), 2006 Central Salt & Marine Chemicals Research Institute Role of Diatoms...

  2. Reconstruction of Oceanographic Changes Based on the Diatom Records of the Central Okhotsk Sea over the last 500000 Years

    Directory of Open Access Journals (Sweden)

    Wei-Lung Wang Liang-Chi Wang

    2008-01-01

    Full Text Available This study provides insight into changes in sea ice conditions and the oceanographic environment over the past 500 kyr through analysis of the diatom record. Based on the relative abundance of 13 diatoms species in piston core MD012414, four types of environmental conditions in the central Okhotsk Sea over the last 330 ka BP have been distinguished: (1 open-ocean alternating with seasonal sea-ice cover in Stages 9, 5, and 1; (2 almost open-ocean free of sea-ice cover in Stages 7 and 3; (3 perennial sea-ice cover in Stages 6, 4, and 2; and (4 a warm ice-age dominated by open ocean assemblages in Stage 8. The littoral diatom species, Paralia sulcata, showed a sudden increase from the glacial period to the nterglacial period over the last 330 ka BP, except during Stage 8. Such a result implies that melting sea-ice transported terrigenous materials from the north Okhotsk Sea continental shelves to the central ocean during eglaciation. From Stage 13 to Stage 10, however, cold and warm marine conditions unexpectedly occurred in the late interglacial periods and the glacial periods, respectively. One possible reason for this is a lack of age control points from Stage 13 to Stage 10, and the different sediment accumulation rates between glacial and interglacial periods. This study suggests not only the process by which oceanographic variation of sea ice occurred, but also new significance for Paralia sulcata as an indicator in the diatom record of the Okhotsk Sea.

  3. Stream systems.

    Science.gov (United States)

    Jack E. Williams; Gordon H. Reeves

    2006-01-01

    Restored, high-quality streams provide innumerable benefits to society. In the Pacific Northwest, high-quality stream habitat often is associated with an abundance of salmonid fishes such as chinook salmon (Oncorhynchus tshawytscha), coho salmon (O. kisutch), and steelhead (O. mykiss). Many other native...

  4. The relevance of diatoms for water quality assessment in South ...

    African Journals Online (AJOL)

    Water quality assessment protocols based on the use of diatoms are now well developed and their value substantiated at an international level. The use of diatoms is not designed or intended to be a “rapid” technology. The detailed level of information generated from the procedure outweighs perceived disadvantages of ...

  5. Epiphytic Diatoms along Environmental Gradients in Western European Shallow Lakes

    NARCIS (Netherlands)

    Blanco, Saul; Cejudo-Figueiras, Cristina; Alvarez-Blanco, Irene; van Donk, Ellen|info:eu-repo/dai/nl/069838593; Gross, Elisabeth M.; Hansson, Lars-Anders; Irvine, Kenneth; Jeppesen, Erik; Kairesalo, Timo; Moss, Brian; Noges, Tiina; Becares, Eloy

    Diatom-based assays have been successfully associated worldwide with the tropic status of lakes. Several studies have demonstrated a correlation between epiphytic diatoms and nutrient load in shallow lakes and wetlands. We examine the relative importance of environmental factors in explaining the

  6. Colonization of diatom aggregates by the dinoflagellate Noctiluca scintillans

    DEFF Research Database (Denmark)

    Tiselius, P.; Kiørboe, Thomas

    1998-01-01

    coagulation of diatom cells and not by mucus feeding behavior of N. scintillans. N. scintillans can be positively buoyant, and estimates of encounter rates between N. scintillans and diatom aggregates during ascent demonstrates that this mechanism is sufficient to account for the observed colonization...

  7. Diatom-based water quality monitoring in southern Africa ...

    African Journals Online (AJOL)

    The purpose of this review is to summarise the challenges and future prospects associated with biological water quality monitoring using diatoms with special focus on southern Africa. Much work still needs to be carried out on diatom tolerances, ecological preferences and ecophysiology. It is recommended that past ...

  8. Diatom distribution in the surficial sediments of Lake Fuxian, Yunnan ...

    African Journals Online (AJOL)

    ajl yemi

    2011-11-30

    Nov 30, 2011 ... The diatom abundances per gram dry weight sediment vary between 18.4 × 106 and 66.9 × 106 valves (Figure 2). Abundances per gram dry weight of the eight most abundant diatom taxa are shown in Figure 3. The DCA diagram shows centroids of ecoregions in the ordination space of the first axes.

  9. Interference patterns and extinction ratio of the diatom Coscinodiscus granii

    DEFF Research Database (Denmark)

    Maibohm, Christian; Friis, Søren Michael Mørk; Ellegaard, M.

    2015-01-01

    We report experimental and theoretical verification of the nature and position of multiple interference points of visible light transmitted through the valve of the centric diatom species Coscinodiscus granii. Furthermore, by coupling the transmitted light into an optical fiber and moving...... the diatom valve between constructive and destructive interference points, an extinction ratio of 20 dB is shown...

  10. Influence of diatom diversity on the ocean biological carbon pump

    Science.gov (United States)

    Tréguer, Paul; Bowler, Chris; Moriceau, Brivaela; Dutkiewicz, Stephanie; Gehlen, Marion; Aumont, Olivier; Bittner, Lucie; Dugdale, Richard; Finkel, Zoe; Iudicone, Daniele; Jahn, Oliver; Guidi, Lionel; Lasbleiz, Marine; Leblanc, Karine; Levy, Marina; Pondaven, Philippe

    2018-01-01

    Diatoms sustain the marine food web and contribute to the export of carbon from the surface ocean to depth. They account for about 40% of marine primary productivity and particulate carbon exported to depth as part of the biological pump. Diatoms have long been known to be abundant in turbulent, nutrient-rich waters, but observations and simulations indicate that they are dominant also in meso- and submesoscale structures such as fronts and filaments, and in the deep chlorophyll maximum. Diatoms vary widely in size, morphology and elemental composition, all of which control the quality, quantity and sinking speed of biogenic matter to depth. In particular, their silica shells provide ballast to marine snow and faecal pellets, and can help transport carbon to both the mesopelagic layer and deep ocean. Herein we show that the extent to which diatoms contribute to the export of carbon varies by diatom type, with carbon transfer modulated by the Si/C ratio of diatom cells, the thickness of the shells and their life strategies; for instance, the tendency to form aggregates or resting spores. Model simulations project a decline in the contribution of diatoms to primary production everywhere outside of the Southern Ocean. We argue that we need to understand changes in diatom diversity, life cycle and plankton interactions in a warmer and more acidic ocean in much more detail to fully assess any changes in their contribution to the biological pump.

  11. Isolation of diatom Navicula cryptocephala and characterization of ...

    African Journals Online (AJOL)

    sjce

    synthesis to the storage of neutral lipids (Qiang et al.,. 2008). Diatoms were shown ... chemical analysis of the oil inside diatom oil droplets, a method for separating ... 120°C for 20 min. 0.1 mg.L. −1. Thiamine, 0.5 μg.L. −1. Biotin and 0.5 μg.L−1.

  12. Climatic and lacustrine morphometric controls of diatom paleoproductivity in a tropical Andean lake

    Science.gov (United States)

    Bao, R.; Hernández, A.; Sáez, A.; Giralt, S.; Prego, R.; Pueyo, J. J.; Moreno, A.; Valero-Garcés, B. L.

    2015-12-01

    The coupling of lake dynamics with catchment biogeochemistry is considered the key element controlling primary production in mountain lakes at time scales of a few decades to millennia, yet little is known on the impacts of the morphometry of lakes throughout their ontogeny. As Lake Chungará (Central Andean Altiplano, northern Chile) experienced long-term lake-level fluctuations that strongly modified its area:volume ratio, it is an ideal system for exploring the relative roles that long-term climatic shifts and lake morphometry play on biosiliceous lacustrine productivity. In this paper, we review previous data on the percent contents of total organic carbon, total inorganic carbon, total nitrogen, total biogenic silica, isotopic composition of organic matter, carbonates, and diatom frustules, as well as data on the abundance of the chlorophycean Botryococcus braunii in this lake for the period 12,400-1300 cal yr BP. We also include new data on organic carbon and biogenic silica mass accumulation rates and the diatom assemblage composition of an offshore core dated using 14C and U/Th. Biosiliceous productivity in Lake Chungará was influenced by shifts in allochthonous nutrient inputs related to variability in precipitation. Humid phases dated at approx. 12,400 to 10,000 and 9600 to 7400 cal yr BP coincide with periods of elevated productivity, whereas decreases in productivity were recorded during arid phases dated at approx. 10,000 to 9600 and 7400 to 3550 cal yr BP (Andean mid-Holocene Aridity Period). However, morphometry-related in-lake controls led to a lack of a linear response of productivity to precipitation variability. During the late Glacial to early Holocene, lowstands facilitated complete water column mixing, prompting episodic massive blooms of a large centric diatom, Cyclostephanos cf. andinus. Thus, moderate productivity could be maintained, regardless of aridity, by this phenomenon of morphometric eutrophy during the early history of the lake

  13. Applications of Diatoms as Potential Microalgae in Nanobiotechnology

    Directory of Open Access Journals (Sweden)

    Ahmad Yari Khosroushahi

    2012-05-01

    Full Text Available Introduction: Diatoms are single cell eukaryotic microalgae, which present in nearly every water habitat make them ideal tools for a wide range of applications such as oil explora­tion, forensic examination, environmental indication, biosilica pattern generation, toxicity testing and eutrophication of aqueous ecosystems. Methods: Essential information on diatoms were reviewed and discussed towards impacts of diatoms on biosynthesis and bioremediation. Results: In this review, we present the recent progress in this century on the application of diatoms in waste degradation, synthesis of biomaterial, biomineraliza­tion, toxicity and toxic effects of mineral elements evaluations. Conclusion: Diatoms can be considered as metal toxicity bioindicators and they can be applied for biomineralization, synthesis of biomaterials, and degradation of wastes.

  14. Isolation and biochemical characterization of underwater adhesives from diatoms.

    Science.gov (United States)

    Poulsen, Nicole; Kröger, Nils; Harrington, Matthew J; Brunner, Eike; Paasch, Silvia; Buhmann, Matthias T

    2014-01-01

    Many aquatic organisms are able to colonize surfaces through the secretion of underwater adhesives. Diatoms are unicellular algae that have the capability to colonize any natural and man-made submerged surfaces. There is great technological interest in both mimicking and preventing diatom adhesion, yet the biomolecules responsible have so far remained unidentified. A new method for the isolation of diatom adhesive material is described and its amino acid and carbohydrate composition determined. The adhesive materials from two model diatoms show differences in their amino acid and carbohydrate compositions, but also share characteristic features including a high content of uronic acids, the predominance of hydrophilic amino acid residues, and the presence of 3,4-dihydroxyproline, an extremely rare amino acid. Proteins containing dihydroxyphenylalanine, which mediate underwater adhesion of mussels, are absent. The data on the composition of diatom adhesives are consistent with an adhesion mechanism based on complex coacervation of polyelectrolyte-like biomolecules.

  15. Epibiotic Diatoms Are Universally Present on All Sea Turtle Species.

    Directory of Open Access Journals (Sweden)

    Nathan J Robinson

    Full Text Available The macro-epibiotic communities of sea turtles have been subject to growing interest in recent years, yet their micro-epibiotic counterparts are almost entirely unknown. Here, we provide the first evidence that diatoms are epibionts for all seven extant species of sea turtle. Using Scanning Electron Microscopy, we inspected superficial carapace or skin samples from a single representative of each turtle species. We distinguished 18 diatom taxa from these seven individuals, with each sea turtle species hosting at least two diatom taxa. We recommend that future research is undertaken to confirm whether diatom communities vary between sea turtle species and whether these diatom taxa are facultative or obligate commensals.

  16. Marine diatom study and stratigraphy of cenozoic sediments in the coastal plain between Morro da Jureia and Barra do Una, State of Sao Paulo, Brazil

    International Nuclear Information System (INIS)

    Servant-Vildary, S.; Soguio, K.

    1992-01-01

    Samples of sediments obtained from cores of four wells drilled by Nuclebras, in the coastal plain of State of Sao Paulo, have been here studied from diatom flora viewpoint. The irregular surface of the crystalline pre-Cambrian basements rocks is locally covered by the Pliocene Pariquera-Acu Formation - like deposits, whose contact with the Quaternary sediments is flat, being situated about 40 m bellow the present sea-level. The contact between the Holocene Santos Formation and the probable Pleistocene Cananeia Formation is very difficult to be recognized. It has been tentatively established based on two radiocarbon ages. Dominantly clayey-silty intervals from the wells F-003 and F-004, probably related to the Cananeia Formation, have been selectively sampled and studied for definition of their diatom flora assemblage. (author)

  17. Aggregate Formation During the Viral Lysis of a Marine Diatom

    Directory of Open Access Journals (Sweden)

    Yosuke Yamada

    2018-05-01

    Full Text Available Recent studies have suggested that the viral lysis of microbes not only facilitates the conversion of particulate organic matter into dissolved organic matter, but also promotes the formation of organic aggregates, which enhance the export of organic carbon from the surface ocean to the deep sea. However, experimental data supporting this proposition are limited. Here, we tested the hypothesis that the viral infection of marine diatoms enhances aggregate formation. We used a model system consisting of Chaetoceros tenuissimus, a bloom-forming diatom with an approximate cell size of 3–10 μm, and a DNA virus, CtenDNAV type II, which replicates in the nucleus of C. tenuissimus. The volume of large particles (50–400 μm in equivalent spherical diameters, determined from photographic images was measured over time (up to 15 days in the diatom-alone control and a virus-added diatom culture. We also determined the concentrations of Coomassie-stainable particles (CSP, proteinaceous particles and transparent exopolymeric particles (TEP, acid-polysaccharide-rich particles with colorimetric methods. The total volume of large particles was significantly higher (5–59 fold in the virus-added diatoms than in the diatom-alone control during the period in which the viral lysis of the diatoms proceeded. One class of large particles produced in the virus-added diatoms was flake-shaped. The flakes were tightly packed and dense, and sank rapidly, possibly playing an important role in the vertical delivery of materials from the surface to the deep sea. The bulk CSP concentrations tended to be higher in the virus-added diatoms than in the diatom-alone control, whereas the reverse was true for the TEP. These results suggest that proteinaceous polymers are involved in aggregate formation. Our data support the emerging notion that the viral lysis of microbes facilitates aggregate formation and the export of organic carbon in the ocean.

  18. Coupled states approximation for scattering of two diatoms

    International Nuclear Information System (INIS)

    Heil, T.G.; Green, S.; Kouri, D.J.

    1978-01-01

    The coupled states (CS) approximation is developed in detail for the general case of two colliding diatomic molecules. The high energy limit of the exact Lippmann-Schwinger equation is used to obtain the CS equations so that the sufficiency conditions of Kouri, Heil, and Shimoni apply. In addition, care is taken to ensure correct treatment of parity in the CS, as well as correct labeling of the CS by an effective orbital angular momentum. The analysis follows that given by Shimoni and Kouri for atom-diatom collisions where the coupled rotor angular momentum j 12 and projection lambda 12 replace the single diatom angular momentum j and projection lambda. The result is an expression for the differential scattering amplitude which is a generalization of the highly successful McGuire-Kouri differential scattering amplitude for atom-diatom collisions. Also, the opacity function is found to be a generalization of the Clebsch-Gordon weight atom-diatom expression of Shimoni and Kouri. The diatom-diatom CS body frame T matrix T/sup J/(j 1 'j 2 'j 12 'lambda 12 'vertical-bar j 1 j 2 j 12 lambda 12 ) is also found to be nondiagonal in lambda' 12 ,lambda 12 , just as in the atom-diatom case. The parity and identical molecule interchange symmetries are also considered in detail in both the exact close coupling and CS approximations. Symmetrized expressions for all relevant quantities are obtained, along with the symmetrized coupled equations one must solve. The properly labeled and symmetrized CS equations have not been derived before this present work. The present correctly labeled CS theory is tested computationally by applications to three different diatom-diatom potentials. First we carry out calculations for para-para, ortho-ortho, and ortho-para H 2 -H 2 collisions using the experimental potential of Farrar and Lee

  19. Importance of sampling frequency when collecting diatoms

    KAUST Repository

    Wu, Naicheng

    2016-11-14

    There has been increasing interest in diatom-based bio-assessment but we still lack a comprehensive understanding of how to capture diatoms’ temporal dynamics with an appropriate sampling frequency (ASF). To cover this research gap, we collected and analyzed daily riverine diatom samples over a 1-year period (25 April 2013–30 April 2014) at the outlet of a German lowland river. The samples were classified into five clusters (1–5) by a Kohonen Self-Organizing Map (SOM) method based on similarity between species compositions over time. ASFs were determined to be 25 days at Cluster 2 (June-July 2013) and 13 days at Cluster 5 (February-April 2014), whereas no specific ASFs were found at Cluster 1 (April-May 2013), 3 (August-November 2013) (>30 days) and Cluster 4 (December 2013 - January 2014) (<1 day). ASFs showed dramatic seasonality and were negatively related to hydrological wetness conditions, suggesting that sampling interval should be reduced with increasing catchment wetness. A key implication of our findings for freshwater management is that long-term bio-monitoring protocols should be developed with the knowledge of tracking algal temporal dynamics with an appropriate sampling frequency.

  20. Dominance of cyanobacterial and cryptophytic assemblage correlated to CDOM at heavy metal contamination sites of Gujarat, India.

    Science.gov (United States)

    Patidar, Shailesh Kumar; Chokshi, Kaumeel; George, Basil; Bhattacharya, Sourish; Mishra, Sandhya

    2015-01-01

    Industrial clusters of Gujarat, India, generate high quantity of effluents which are received by aquatic bodies such as estuary and coastal water. In the present study, microalgal assemblage, heavy metals, and physico-chemical variables were studied from different habitats. Principal component analysis revealed that biovolume of cyanobacterial and cryptophytic community positively correlated with the heavy metal concentration (Hg, As, Zn, Fe, Mo, Ni, and Co) and chromophoric dissolved organic matter (CDOM) under hypoxic environment. Green algae and diatoms dominated at comparatively lower nitrate concentration which was positively associated with Pb and Mn.

  1. Stream Evaluation

    Data.gov (United States)

    Kansas Data Access and Support Center — Digital representation of the map accompanying the "Kansas stream and river fishery resource evaluation" (R.E. Moss and K. Brunson, 1981.U.S. Fish and Wildlife...

  2. Environmental quality of the Fosso della Casaccia. stream (Rome, Italy). Evaluation of the ecological impact of wastewaters from the ENEA Research Centre Casaccia

    International Nuclear Information System (INIS)

    Formichetti, P.; Mancini, L.; Morgana, J.G.; Izzo, G.

    2008-01-01

    The study concerned the evaluation of ENEA Research Centre wastewaters effect on the nearby stream Fosso della Casaccia. These pollutants consist of black waters and low radioactivity substances. The effects on stream's ecosystem were evaluated using macro invertebrate community structure, diatom community structure, chemical and microbiological analysis of sediments and water, stream.s ecological functionality level, toxicological indicators. The results showed a general strong pollution degree of the ecosystem that could also reach a higher level due to the low flow of the stream (and consequent low self-depuration effect of the stream itself). Maintenance interventions, if not adequately planned, can also negatively influence the stream ecosystem [it

  3. Diatoms from a peat bog on the Pešter plateau (southwestern Serbia: New records for diatom flora of Serbia

    Directory of Open Access Journals (Sweden)

    Vidaković Danijela

    2016-01-01

    Full Text Available The distribution of diatoms was studied in three types of diatom communities (epiphytes, benthos and plankton of a peat bog on the Pešter plateau. The observed diatom flora inhabited all investigated communities, comprising in total 250 taxa in 53 genera. Among them, 45 taxa were new records for the Serbian diatom flora. Identified taxa belonged to different groups of algae, however alkaliphile diatoms were dominant. New ecological data for Encyonopsis minuta, Pinnularia isostauron and P. marchica are presented here. All the diatoms were documented by light micrographs, and brief notes on their morphology, distribution and ecology are provided. [Projekat Ministarstva nauke Republike Srbije, br. TR 037009

  4. Codon adaptation and synonymous substitution rate in diatom plastid genes.

    Science.gov (United States)

    Morton, Brian R; Sorhannus, Ulf; Fox, Martin

    2002-07-01

    Diatom plastid genes are examined with respect to codon adaptation and rates of silent substitution (Ks). It is shown that diatom genes follow the same pattern of codon usage as other plastid genes studied previously. Highly expressed diatom genes display codon adaptation, or a bias toward specific major codons, and these major codons are the same as those in red algae, green algae, and land plants. It is also found that there is a strong correlation between Ks and variation in codon adaptation across diatom genes, providing the first evidence for such a relationship in the algae. It is argued that this finding supports the notion that the correlation arises from selective constraints, not from variation in mutation rate among genes. Finally, the diatom genes are examined with respect to variation in Ks among different synonymous groups. Diatom genes with strong codon adaptation do not show the same variation in synonymous substitution rate among codon groups as the flowering plant psbA gene which, previous studies have shown, has strong codon adaptation but unusually high rates of silent change in certain synonymous groups. The lack of a similar finding in diatoms supports the suggestion that the feature is unique to the flowering plant psbA due to recent relaxations in selective pressure in that lineage.

  5. Effect of the Silica Content of Diatoms on Protozoan Grazing

    Directory of Open Access Journals (Sweden)

    Shuwen Zhang

    2017-06-01

    Full Text Available This study examined the effect that silica content in diatom cells has on the behavior of protists. The diatoms Thalassiosira weissflogii and T. pseudonana were cultured in high or low light conditions to achieve low and high silica contents, respectively. These cells were then fed to a heterotrophic dinoflagellate Noctiluca scintillans and a ciliate Euplotes sp. in single and mixed diet experiments. Our results showed that in general, N. scintillans and Euplotes sp. both preferentially ingested the diatoms with a low silica content rather than those with a high silica content. However, Euplotes sp. seemed to be less influenced by the silica content than was N. scintillans. In the latter case, the clearance and ingestion rate of the low silica diatoms were significantly higher, both in the short (6-h and long (1-d duration grazing experiments. Our results also showed that N. scintillans required more time to digest the high silica-containing cells. As the high silica diatoms are harder to digest, this might explain why N. scintillans exhibits a strong preference for the low silica prey. Thus, the presence of high silica diatoms might limit the ability of the dinoflagellate to feed. Our findings suggest that the silica content of diatoms affects their palatability and digestibility and, consequently, the grazing activity and selectivity of protozoan grazers.

  6. Controlling the invasive diatom Didymosphenia geminata: an ecotoxicity assessment of four potential biocides.

    Science.gov (United States)

    Jellyman, P G; Clearwater, S J; Clayton, J S; Kilroy, C; Blair, N; Hickey, C W; Biggs, B J F

    2011-07-01

    In 2004, an invasive mat-forming freshwater diatom, Didymosphenia geminata (didymo), was found in New Zealand causing concern with regard to potential consequences for local freshwater ecosystems. A four-stage research program was initiated to identify methods to control D. geminata. This article reports the results of Stage 2, in which four potential control compounds [Gemex™ (a chelated copper formulation), EDTA, Hydrothol®191, and Organic Interceptor™ (a pine oil formulation)] selected in Stage 1 were evaluated for their biocidal efficacy on D. geminata and effects on non-target organisms using both artificial stream and laboratory trials. Artificial stream trials evaluated the mortality rates of D. geminata and fishes to three concentrations of the four biocides, whereas laboratory toxicity trials tested the response of green alga and cladocera to a range of biocide concentrations and exposure times. In artificial stream trials, Gemex and Organic Interceptor were the most effective biocides against D. geminata for a number of measured indices; however, exposure of fishes to Organic Interceptor resulted in high mortality rates. Laboratory toxicity testing indicated that Gemex might negatively affect sensitive stream invertebrates, based on the cladoceran sensitivity at the proposed river control dose. A decision support matrix evaluated the four biocides based on nine criteria stipulated by river stakeholders (effectiveness, non-target species impacts, stalk removal, degradation profile, risks to health and safety, ease of application, neutralization potential, cost, and local regulatory requirements) and Gemex was identified as the product warranting further refinement prior to an in-river trial.

  7. Diatom feeding across trophic guilds in tidal flat nematodes, and the importance of diatom cell size

    Science.gov (United States)

    Moens, Tom; Vafeiadou, Anna-Maria; De Geyter, Ellen; Vanormelingen, Pieter; Sabbe, Koen; De Troch, Marleen

    2014-09-01

    We examine the capacity of nematodes from three feeding types (deposit feeder, epistrate feeder, predator) to utilize microphytobenthos (MPB), and assess whether diatom cell size and consumer body size are important drivers of their feeding. We analyzed natural stable isotope ratios of carbon and nitrogen in abundant nematode genera and a variety of carbon sources at an estuarine intertidal flat. All nematodes had δ13C indicating that MPB is their major carbon source. δ15N, however, demonstrated that only one deposit and one epistrate feeder genus obtained most of their carbon from direct grazing on MPB, whereas other deposit feeders and predators obtained at least part of their carbon by predation on MPB grazers. We then performed a microcosm experiment in which equal cell numbers of each of three differently sized strains of the pennate diatom Seminavis were offered as food to four, one and one genera of deposit feeders, epistrate feeders and predators, respectively. Previous studies have shown that all but the epistrate feeder ingest whole diatoms, whereas the epistrate feeder pierces cells and sucks out their contents. Most genera showed markedly higher carbon absorption from medium and large cells than from small ones. When considering the number of cells consumed, however, none of the nematodes which ingest whole cells exhibited a clear preference for any specific diatom size. The epistrate feeder was the smallest nematode taxon considered here, yet it showed a marked preference for large cells. These results highlight that the feeding mechanism is much more important than consumer size as a driver of particle size selection in nematodes grazing MPB.

  8. Impact of Late Holocene climate variability and anthropogenic activities on Biscayne Bay (Florida, U.S.A.): evidence from diatoms

    Science.gov (United States)

    Wachnicka, Anna; Gaiser, Evelyn; Wingard, Lynn; Briceño, Henry; Harlem, Peter

    2013-01-01

    Shallow marine ecosystems are experiencing significant environmental alterations as a result of changing climate and increasing human activities along coasts. Intensive urbanization of the southeast Florida coast and intensification of climate change over the last few centuries changed the character of coastal ecosystems in the semi-enclosed Biscayne Bay, Florida. In order to develop management policies for the Bay, it is vital to obtain reliable scientific evidence of past ecological conditions. The long-term records of subfossil diatoms obtained from No Name Bank and Featherbed Bank in the Central Biscayne Bay, and from the Card Sound Bank in the neighboring Card Sound, were used to study the magnitude of the environmental change caused by climate variability and water management over the last ~ 600 yr. Analyses of these records revealed that the major shifts in the diatom assemblage structures at No Name Bank occurred in 1956, at Featherbed Bank in 1966, and at Card Sound Bank in 1957. Smaller magnitude shifts were also recorded at Featherbed Bank in 1893, 1942, 1974 and 1983. Most of these changes coincided with severe drought periods that developed during the cold phases of El Niño Southern Oscillation (ENSO), Atlantic Multidecadal Oscillation (AMO) and Pacific Decadal Oscillation (PDO), or when AMO was in warm phase and PDO was in the cold phase. Only the 1983 change coincided with an unusually wet period that developed during the warm phases of ENSO and PDO. Quantitative reconstructions of salinity using the weighted averaging partial least squares (WA-PLS) diatom-based salinity model revealed a gradual increase in salinity at the three coring locations over the last ~ 600 yr, which was primarily caused by continuously rising sea level and in the last several decades also by the reduction of the amount of freshwater inflow from the mainland. Concentration of sediment total nitrogen (TN), total phosphorus (TP) and total organic carbon (TOC) increased in the

  9. Succession of Periphyton and Phytoplankton Assemblages in Years with Varying Amounts of Precipitation in a Shallow Urban Lake (Lake Jeziorak Mały, Poland

    Directory of Open Access Journals (Sweden)

    Zębek Elžbieta

    2014-08-01

    Full Text Available This study of periphyton assemblages (periphyton in separator pipes, epilithon and epiphyton and phytoplankton was carried out in Lake Jeziorak Maly in 1997-2003 and 2005. Since precipitation amounts varied in these years, changes in the abundance, biomass, taxonomic group structure, spe-cies diversity and dominant taxa of these assemblages were analyzed in relation to the physical and chemical water parameters. The periphyton in pipes had their highest abundance and biomass at the mean precipitation in the vegetative season and at maximum precipitations in winter 2000, and also in the 1997 vegetative season when there were high levels of electrolytic conductivity and orthophosphate and chloride concentrations. The assemblage was dominated by the diatoms Diatoma vulgaris which was resistant to washing and Navicula gregaria resistant to high amounts of organic matter. Similarly, maximum abundance and biomass of epilithon was found at the maximum precipitation level. However, in 2003 there was a low precipitation level which favoured habitation by epilithic filamentous chlorophytes, especially Ulothrix tenuissima. Meanwhile, epiphyton and phytoplankton thrived best in the high precipitation conditions and moderate chloride concentration in 2001. These assemblages were dominated by species typical for eutrophic waters, such as Gomphonema oliva-ceum and Planktolyngbya brevicellularis. Differences in the dynamics of periphyton assemblages and phytoplankton in the studied years indicate varying succession rates in these assemblages, especially in the separator pipes and on stones. These phenomena are considered to be related to the different environmental conditions engendered by variable amounts of precipitation.

  10. Comparing optical properties of different species of diatoms

    DEFF Research Database (Denmark)

    Maibohm, Christian; Friis, Søren Michael Mørk; Su, Y.

    2015-01-01

    species dependent with huge variety in size, shape, and micro- structure. We have experimentally investigated optical properties of frustules of several species of diatoms to further understand light harvesting properties together with commo n traits, effects and differences between the different...... analysis software. The software uses parameters which are extracted from experimental im ages as basis for simulation and allows us to extract the influence of the different elements of the frustule. The information could be used both for predicting optical properties of diatoms and by changing frustule...... parameters, maybe by altering growth conditions of the diatoms tailor their optical properties....

  11. A Zeeman slower for diatomic molecules

    Science.gov (United States)

    Petzold, M.; Kaebert, P.; Gersema, P.; Siercke, M.; Ospelkaus, S.

    2018-04-01

    We present a novel slowing scheme for beams of laser-coolable diatomic molecules reminiscent of Zeeman slowing of atomic beams. The scheme results in efficient compression of the one-dimensional velocity distribution to velocities trappable by magnetic or magneto-optical traps. We experimentally demonstrate our method in an atomic testbed and show an enhancement of flux below v = 35 m s‑1 by a factor of ≈20 compared to white light slowing. 3D Monte Carlo simulations performed to model the experiment show excellent agreement. We apply the same simulations to the prototype molecule 88Sr19F and expect 15% of the initial flux to be continuously compressed in a narrow velocity window at around 10 m s‑1. This is the first experimentally shown continuous and dissipative slowing technique in molecule-like level structures, promising to provide the missing link for the preparation of large ultracold molecular ensembles.

  12. Recent saltmarsh foraminiferal assemblages from Iceland

    Science.gov (United States)

    Lübbers, Julia; Schönfeld, Joachim

    2018-01-01

    This study reports for the first time boreal to subarctic intertidal foraminiferal assemblages from saltmarshes at Borgarnes and Faskrudsfjördur on Iceland. The composition of living and dead foraminiferal assemblages was investigated along transects from the tidal flat to the highest reach of halophytic plants. The foraminiferal assemblages from Borgarnes showed 18 species in the total foraminiferal assemblage of which only 7 species were recorded in the living fauna. The assemblages were dominated by agglutinated taxa, whereas 3 calcareous species were recorded, of which only Haynesina orbicularis was found in the living fauna. The distribution limit of calcifying species corresponds to the lower boundary of the lower saltmarsh vegetation zone. Furthermore, calcareous tests showed many features of dissolution, which is an indication of a carbonate corrosive environment. The species forming the dead assemblages were mainly derived from the ambient intertidal areas and were displaced by tidal currents into the saltmarsh. The foraminiferal assemblages from Faskrudsfjördur showed two species, of which only one species was recorded in the living fauna. The assemblage was dominated by the agglutinated foraminifer Trochaminita irregularis. The foraminiferal species recorded on Iceland were the same as commonly found elsewhere in Europa. Since no species was found which is endemic to North America, Iceland is considered part of the European bio province. The foraminiferal could have been immigrated to Iceland from Europe through warm water currents, migratory birds or marine traffic since the last Ice Age.

  13. Neotropical Amphibian Declines Affect Stream Ecosystem Properties

    Science.gov (United States)

    Connelly, S.; Pringle, C. M.; Bixby, R. J.; Whiles, M. R.; Lips, K. R.; Brenes, R.; Colon-Gaud, J. C.; Kilham, S.; Hunte-Brown, M.

    2005-05-01

    Global declines of amphibians are well documented, yet effects of these dramatic losses on ecosystem structure and function are poorly understood. As part of a larger collaborative project, we compared two upland Panamanian streams. Both streams are biologically and geologically similar; however, one stream (Fortuna) has recently experienced almost complete extirpation of stream-dwelling frogs, while the other (Cope) still has intact populations. We experimentally excluded tadpoles from localized areas in each stream. We then compared chlorophyll a, algal community composition, ash-free dry mass (AFDM), inorganic matter, and insect assemblages in control and exclusion areas. Additionally, we sampled the natural substrate of both streams monthly for chlorophyll a, algal community composition, AFDM, and inorganic matter. At Cope, chlorophyll a, AFDM, and inorganic matter were greater in areas where tadpoles were excluded than in their presence. Numbers of dominant algal species (e.g., Nupela praecipua and Eunotia siolii) were greater in the exclusion versus control treatments. Monthly sampling of natural substrate indicated higher chlorophyll a and AFDM at Cope compared to Fortuna. Our data suggest that stream-dwelling anuran larvae have significant impacts on algal communities. These results also have implications for predicting the relevance of short-term experimental manipulations to long-term, whole-stream processes.

  14. Short-term toxicity of hexavalent-chromium to epipsammic diatoms of a microtidal estuary (Río de la Plata): Responses from the individual cell to the community structure

    International Nuclear Information System (INIS)

    Licursi, M.; Gómez, N.

    2013-01-01

    Highlights: •Diatom's nuclear abnormalities were significantly higher as consequence of chromium exposure. •Diatoms and chlorophytes increased in treatment microcosms. •Nitzschia palea proportion increased significantly in the treatment microcosms. -- Abstract: Diatoms are an integral and often dominant component of the benthic microalgal assemblage in estuarine and shallow coastal environments. Different toxic substances discharged into these ecosystems persist in the water, sediments, and biota for long periods. Among these pernicious agents, the toxicity in diatoms by metal is linked to different steps in the transmembrane and internal movements of the toxicant, causing perturbations in the normal structural and functional cellular components. These changes constitute an early, nontaxonomic warning signal that could potentially serve as an indicator of this type of pollution. The aim of this work was to study the environment-reflecting short-term responses at different levels of organization of epipsammic diatoms from the Río de la Plata estuary, Argentina that had been exposed to hexavalent chromium within experimental microcosms. To this end we monitored: (i) changes in the proportion of the diatoms in relation to other algal groups at the biofilm community level; (ii) shifts in species composition at the diatom-assemblage level; (iii) projected changes in the densities of the most representative species at the population level through comparison of relative growth rates and generation times; and (iv) the cytological changes at the cellular and subcellular levels as indicated by the appearance of teratological effects on individuals and nuclear alterations. The epipsammic biofilms were exposed for 96 h to chromium at a concentration similar to that measured in highly impacted sites along the coast (80 μg L −1 ). Chromium pollution, at this concentration and short exposure time did not affect the algal biomass and density of these mature biofilms. The

  15. Short-term toxicity of hexavalent-chromium to epipsammic diatoms of a microtidal estuary (Río de la Plata): Responses from the individual cell to the community structure

    Energy Technology Data Exchange (ETDEWEB)

    Licursi, M., E-mail: malena@ilpla.edu.ar; Gómez, N.

    2013-06-15

    Highlights: •Diatom's nuclear abnormalities were significantly higher as consequence of chromium exposure. •Diatoms and chlorophytes increased in treatment microcosms. •Nitzschia palea proportion increased significantly in the treatment microcosms. -- Abstract: Diatoms are an integral and often dominant component of the benthic microalgal assemblage in estuarine and shallow coastal environments. Different toxic substances discharged into these ecosystems persist in the water, sediments, and biota for long periods. Among these pernicious agents, the toxicity in diatoms by metal is linked to different steps in the transmembrane and internal movements of the toxicant, causing perturbations in the normal structural and functional cellular components. These changes constitute an early, nontaxonomic warning signal that could potentially serve as an indicator of this type of pollution. The aim of this work was to study the environment-reflecting short-term responses at different levels of organization of epipsammic diatoms from the Río de la Plata estuary, Argentina that had been exposed to hexavalent chromium within experimental microcosms. To this end we monitored: (i) changes in the proportion of the diatoms in relation to other algal groups at the biofilm community level; (ii) shifts in species composition at the diatom-assemblage level; (iii) projected changes in the densities of the most representative species at the population level through comparison of relative growth rates and generation times; and (iv) the cytological changes at the cellular and subcellular levels as indicated by the appearance of teratological effects on individuals and nuclear alterations. The epipsammic biofilms were exposed for 96 h to chromium at a concentration similar to that measured in highly impacted sites along the coast (80 μg L{sup −1}). Chromium pollution, at this concentration and short exposure time did not affect the algal biomass and density of these mature

  16. Distribution patterns of fish assemblages in an Eastern Mediterranean intermittent river

    Directory of Open Access Journals (Sweden)

    Vardakas L.

    2015-01-01

    Full Text Available The distribution patterns of fish assemblages within streams can provide insights for river type classifications and may warrant specific conservation actions. However, there is limited knowledge of how fish assemblages assort along a longitudinal axis in Mediterranean intermittent streams. Patterns in spatial and temporal distribution of fish communities were analysed in a Mediterranean intermittent river (Evrotas River located in Southern Greece, hosting three endemic range restricted species of high conservation concern, during the period 2007−2009, with 80% of the river’s total length desiccating in the 2007 and 2008 droughts. The general trend was an increase in fish density and species richness along an upstream-downstream gradient. Fish assemblages from upstream to downstream were characterized by a decrease of the most rheophilic species (Squalius keadicus and an increase of the most stagnophilic species (Tropidophoxinellus spartiaticus. Three river segments, characterized by a high degree of homogeneity were delineated. Habitat and environmental preferences for the studied fish species were identified, with elevation and low flowing habitats being the most important environmental factors affecting fish distribution patterns. The current study provides evidence that even in an intermittent river an assemblage pattern following a longitudinal gradient can be identified, mainly due to the lack of instream barriers that allows recolonization after flow resumption.

  17. Automated Diatom Classification (Part A: Handcrafted Feature Approaches

    Directory of Open Access Journals (Sweden)

    Gloria Bueno

    2017-07-01

    Full Text Available This paper deals with automatic taxa identification based on machine learning methods. The aim is therefore to automatically classify diatoms, in terms of pattern recognition terminology. Diatoms are a kind of algae microorganism with high biodiversity at the species level, which are useful for water quality assessment. The most relevant features for diatom description and classification have been selected using an extensive dataset of 80 taxa with a minimum of 100 samples/taxon augmented to 300 samples/taxon. In addition to published morphological, statistical and textural descriptors, a new textural descriptor, Local Binary Patterns (LBP, to characterize the diatom’s valves, and a log Gabor implementation not tested before for this purpose are introduced in this paper. Results show an overall accuracy of 98.11% using bagging decision trees and combinations of descriptors. Finally, some phycological features of diatoms that are still difficult to integrate in computer systems are discussed for future work.

  18. Diatoms - nature materials with great potential for bioapplications

    Directory of Open Access Journals (Sweden)

    Medarević Đorđe P.

    2016-01-01

    Full Text Available Diatoms are widespread unicellular photosynthetic algae that produce unique highly ordered siliceous cell wall, called frustule. Micro- to nanoporous structure with high surface area that can be easily modified, high mechanical resistance, unique optical features (light focusing and luminescence and biocompatibility make diatom frustule as a suitable raw material for the development of devices such as bio- and gas sensors, microfluidic particle sorting devices, supercapacitors, batteries, solar cells, electroluminescent devices and drug delivery systems. Their wide availability in the form of fossil remains (diatomite or diatomaceous earth as well as easy cultivation in the artificial conditions further supports use of diatoms in many different fields of application. This review focused on the recent achievements in the diatom bioapplications such as drug delivery, biomolecules immobilization, bio- and gas sensing, since great progress was made in this field over the last several years.

  19. Abundance of bacterial and diatom fouling on various surfaces

    Digital Repository Service at National Institute of Oceanography (India)

    PrabhaDevi

    Abundance of bacterial and diatom fouling on aluminium, fibreglass and stainless steel were studied from Dona Paula waters of the Zuari Estuary. Both these forms were reversibly attached in large numbers to surfaces during the initial 24 hr...

  20. A Simplified Quantum Mechanical Model of Diatomic Molecules

    Science.gov (United States)

    Nielsen, Lars Drud

    1978-01-01

    Introduces a simple one-dimensional model of a diatomic molecule that can explain all the essential features of a real two particle quantum mechanical system and gives quantitative results in fair agreement with those of a hydrogen molecule. (GA)

  1. Studies on new antifreeze protein from the psychrophilic diatom ...

    African Journals Online (AJOL)

    Studies on new antifreeze protein from the psychrophilic diatom, Fragilariopsis cylindrus. ... African Journal of Biotechnology. Journal Home · ABOUT THIS ... The predicted gene product, AfpA, had a molecular mass of 27 kDa. Expression of ...

  2. Analytic vibration-rotational matrix elements for diatomic molecules

    International Nuclear Information System (INIS)

    Bouanich, J.P.

    1987-01-01

    The vibration-rotational matrix elements for infrared or Raman transitions vJ → v'J' of diatomic molecules are calculated for powers of the reduced displacement X from parameters of the Dunham potential-energy function. (orig.)

  3. Acidification counteracts negative effects of warming on diatom silicification

    KAUST Repository

    Coello-Camba, Alexandra

    2016-10-24

    Diatoms are a significant group contributing up to 40 % of annual primary production in the oceans. They have a special siliceous cell wall that, acting as a ballast, plays a key role in the sequestration of global carbon and silica. Diatoms dominate primary production in the Arctic Ocean, where global climate change is causing increases in water temperature and in the partial pressure of CO2 (pCO2). Here we show that as water temperature increases diatoms become stressed, grow to smaller sizes, and decrease their silicification rates. But at higher pCO2, as the pH of seawater decreases, silica incorporation rates are increased. In a future warmer Arctic ocean diatoms may have a competitive advantage under increased ocean acidification, as increased pCO2 counteracts the adverse effects of increasing temperature on silicification and buffers its consequences in the biogeochemical cycles of carbon and silica.

  4. Acidification counteracts negative effects of warming on diatom silicification

    KAUST Repository

    Coello-Camba, Alexandra; Agusti, Susana

    2016-01-01

    Diatoms are a significant group contributing up to 40 % of annual primary production in the oceans. They have a special siliceous cell wall that, acting as a ballast, plays a key role in the sequestration of global carbon and silica. Diatoms dominate primary production in the Arctic Ocean, where global climate change is causing increases in water temperature and in the partial pressure of CO2 (pCO2). Here we show that as water temperature increases diatoms become stressed, grow to smaller sizes, and decrease their silicification rates. But at higher pCO2, as the pH of seawater decreases, silica incorporation rates are increased. In a future warmer Arctic ocean diatoms may have a competitive advantage under increased ocean acidification, as increased pCO2 counteracts the adverse effects of increasing temperature on silicification and buffers its consequences in the biogeochemical cycles of carbon and silica.

  5. Modified Ribose Receptor Response in Isolated Diatom Frustules

    Energy Technology Data Exchange (ETDEWEB)

    Fairbanks, Carly R.

    2011-08-26

    Diatoms are a distinctive group of microalgae with the unique ability to produce a highly-ordered biosilica matrix, known as the frustule. Diatoms hold significant potential in the biotechnology field as a silica scaffold for embedding proteins. In this study, we analyzed the funtionalization of biosilica with a receptor complex through genetic modification of the diatom, Thalassiosira pseudonana. Through the use of Foerster Resonance Energy Transfer (FRET), the receptor was shown to remain active in transformed frustules after the inner cellular contents were removed. In addition to protein functionality, growth conditions for T. pseudonana were optimized. Untransformed cultures receiving aeration grew more rapidly than stagnant untransformed cultures. Surprisingly, transformed cultures grew more quickly than untransformed cultures. This study demonstrates isolated diatom frustules provide an effective scaffold for embedded receptor complexes. Through this research, we provide the groundwork for the development of new biosensors for use in diagnostics and environmental remediation.

  6. Pliocene diatoms from the Bryce Canyon Area, Utah

    Digital Repository Service at National Institute of Oceanography (India)

    Setty, M.G.A.P.

    habitat. The fragmentary condition of these indicated agitation during sedimentation. The ratio between the planktonic and benthonic diatoms indicated near-shore deposition. The two extinct species (?), @iSurirella craticula@@ (= @iStictodesmis craticula...

  7. Resonant inelastic collisions of electrons with diatomic molecules

    International Nuclear Information System (INIS)

    Houfek, Karel

    2012-01-01

    In this contribution we give a review of applications of the nonlocal resonance theory which has been successfully used for treating the nuclear dynamics of low-energy electron collisions with diatomic molecules over several decades. We give examples and brief explanations of various structures observed in the cross sections of vibrational excitation and dissociative electron attachment to diatomic molecules such as threshold peaks, boomerang oscillations below the dissociative attachment threshold, or outer-well resonances.

  8. Resonant inelastic collisions of electrons with diatomic molecules

    Energy Technology Data Exchange (ETDEWEB)

    Houfek, Karel, E-mail: karel.houfek@gmail.com [Institute of Theoretical Physics, Faculty of Mathematics and Physics, Charles University, V Holesovickach 2, 180 00 Prague 8 (Czech Republic)

    2012-05-15

    In this contribution we give a review of applications of the nonlocal resonance theory which has been successfully used for treating the nuclear dynamics of low-energy electron collisions with diatomic molecules over several decades. We give examples and brief explanations of various structures observed in the cross sections of vibrational excitation and dissociative electron attachment to diatomic molecules such as threshold peaks, boomerang oscillations below the dissociative attachment threshold, or outer-well resonances.

  9. Epibiotic Diatoms Are Universally Present on All Sea Turtle Species

    OpenAIRE

    Robinson, Nathan J.; Majewska, Roksana; Lazo-Wasem, Eric A.; Nel, Ronel; Paladino, Frank V.; Rojas, Lourdes; Zardus, John D.; Pinou, Theodora

    2016-01-01

    The macro-epibiotic communities of sea turtles have been subject to growing interest in recent years, yet their micro-epibiotic counterparts are almost entirely unknown. Here, we provide the first evidence that diatoms are epibionts for all seven extant species of sea turtle. Using Scanning Electron Microscopy, we inspected superficial carapace or skin samples from a single representative of each turtle species. We distinguished 18 diatom taxa from these seven individuals, with each sea turtl...

  10. Radiational and energetic characteristics of diatomic molecules (data base)

    International Nuclear Information System (INIS)

    Kuznetsova, L.A.; Pazyuk, E.A.; Stolyarov, A.V.

    1993-01-01

    Data base on radiational and energetic characteristics of diatomic molecules was created. The base consists of two parts: reference system and recommended data system. The reference system contains the information about studies of radiational and energetic parameters of more than 1500 electronic states and 1700 electron transfers for ∼ 350 diatomic molecules and their ions. The base bibliography includes ∼ 3000 publications. 11 refs., 1 figs

  11. Potential habitat distribution for the freshwater diatom Didymosphenia geminata in the continental US

    Science.gov (United States)

    Kumar, S.; Spaulding, S.A.; Stohlgren, T.J.; Hermann, K.A.; Schmidt, T.S.; Bahls, L.L.

    2009-01-01

    The diatom Didymosphenia geminata is a single-celled alga found in lakes, streams, and rivers. Nuisance blooms of D geminata affect the diversity, abundance, and productivity of other aquatic organisms. Because D geminata can be transported by humans on waders and other gear, accurate spatial prediction of habitat suitability is urgently needed for early detection and rapid response, as well as for evaluation of monitoring and control programs. We compared four modeling methods to predict D geminata's habitat distribution; two methods use presence-absence data (logistic regression and classification and regression tree [CART]), and two involve presence data (maximum entropy model [Maxent] and genetic algorithm for rule-set production [GARP]). Using these methods, we evaluated spatially explicit, bioclimatic and environmental variables as predictors of diatom distribution. The Maxent model provided the most accurate predictions, followed by logistic regression, CART, and GARP. The most suitable habitats were predicted to occur in the western US, in relatively cool sites, and at high elevations with a high base-flow index. The results provide insights into the factors that affect the distribution of D geminata and a spatial basis for the prediction of nuisance blooms. ?? The Ecological Society of America.

  12. Fish complementarity is associated to forests in Amazonian streams

    Directory of Open Access Journals (Sweden)

    Carolina Rodrigues Bordignon

    Full Text Available The functional structure of communities is commonly measured by the variability in functional traits, which may demonstrate complementarity or redundancy patterns. In this study, we tested the influence of environmental variables on the functional structure of fish assemblages in Amazonian streams within a deforestation gradient. We calculated six ecomorphological traits related to habitat use from each fish species, and used them to calculate the net relatedness index (NRI and the nearest taxon index (NTI. The set of species that used the habitat differently (complementary or overdispersed assemblages occurred in sites with a greater proportion of forests. The set of species that used the habitat in a similar way (redundant or clustered assemblages occurred in sites with a greater proportion of grasses in the stream banks. Therefore, the deforestation of entire watersheds, which has occurred in many Amazonian regions, may be a central factor for the functional homogenization of fish fauna.

  13. Rare species contribute disproportionately to the functional structure of species assemblages.

    Science.gov (United States)

    Leitão, Rafael P; Zuanon, Jansen; Villéger, Sébastien; Williams, Stephen E; Baraloto, Christopher; Fortunel, Claire; Mendonça, Fernando P; Mouillot, David

    2016-04-13

    There is broad consensus that the diversity of functional traits within species assemblages drives several ecological processes. It is also widely recognized that rare species are the first to become extinct following human-induced disturbances. Surprisingly, however, the functional importance of rare species is still poorly understood, particularly in tropical species-rich assemblages where the majority of species are rare, and the rate of species extinction can be high. Here, we investigated the consequences of local and regional extinctions on the functional structure of species assemblages. We used three extensive datasets (stream fish from the Brazilian Amazon, rainforest trees from French Guiana, and birds from the Australian Wet Tropics) and built an integrative measure of species rarity versus commonness, combining local abundance, geographical range, and habitat breadth. Using different scenarios of species loss, we found a disproportionate impact of rare species extinction for the three groups, with significant reductions in levels of functional richness, specialization, and originality of assemblages, which may severely undermine the integrity of ecological processes. The whole breadth of functional abilities within species assemblages, which is disproportionately supported by rare species, is certainly critical in maintaining ecosystems particularly under the ongoing rapid environmental transitions. © 2016 The Author(s).

  14. Spatial and temporal variability in midge (Nematocera) assemblages in shallow Finnish lakes (60-70 deg N) : community-based modelling of past environmental change

    Energy Technology Data Exchange (ETDEWEB)

    Luoto, T.

    2010-07-01

    Multi- and intralake datasets of fossil midge assemblages in surface sediments of small shallow lakes in Finland were studied to determine the most important environmental factors explaining trends in midge distribution and abundance. The aim was to develop palaeoenvironmental calibration models for the most important environmental variables for the purpose of reconstructing past environmental conditions. The developed models were applied to three high-resolution fossil midge stratigraphies from southern and eastern Finland to interpret environmental variability over the past 2000 years, with special focus on the Medieval Climate Anomaly (MCA), the Little Ice Age (LIA) and recent anthropogenic changes. The midge-based results were compared with physical properties of the sediment, historical evidence and environmental reconstructions based on diatoms (Bacillariophyta), cladocerans (Crustacea: Cladocera) and tree rings. The results showed that the most important environmental factor controlling midge distribution and abundance along a latitudinal gradient in Finland was the mean July air temperature (TJul). However, when the dataset was environmentally screened to include only pristine lakes, water depth at the sampling site became more important. Furthermore, when the dataset was geographically scaled to southern Finland, hypolimnetic oxygen conditions became the dominant environmental factor. The results from an intralake dataset from eastern Finland showed that the most important environmental factors controlling midge distribution within a lake basin were river contribution, water depth and submerged vegetation patterns. In addition, the results of the intralake dataset showed that the fossil midge assemblages represent fauna that lived in close proximity to the sampling sites, thus enabling the exploration of within-lake gradients in midge assemblages. Importantly, this within-lake heterogeneity in midge assemblages may have effects on midge-based temperature

  15. Current trends to comprehend lipid metabolism in diatoms.

    Science.gov (United States)

    Zulu, Nodumo Nokulunga; Zienkiewicz, Krzysztof; Vollheyde, Katharina; Feussner, Ivo

    2018-04-01

    Diatoms are the most dominant phytoplankton species in oceans and they continue to receive a great deal of attention because of their significant contributions in ecosystems and the environment. Due to triacylglycerol (TAG) profiles that are abundant in medium-chain fatty acids, diatoms have emerged to be better feed stocks for biofuel production, in comparison to the commonly studied green microalgal species (chlorophytes). Importantly, diatoms are also known for their high levels of the essential ω3 fatty acids, eicosapentaenoic acid (EPA) and docosahexaenoic acid (DHA) and are considered to be a promising alternative source of these components. The two most commonly exploited diatoms include Thalassiosira pseudonana and Phaeodactylum tricornutum. Although obvious similarities between diatoms and chlorophytes exist, there are some substantial differences in their lipid metabolism. This review provides an overview on lipid metabolism in diatoms, with P. tricornutum as the most explored model. Special emphasis is placed on the synthesis and incorporation of very long chain ω3 fatty acids into lipids. Furthermore, current approaches including genetic engineering and biotechnological methods aimed at improving and maximizing lipid production in P. tricornutum are also discussed. Copyright © 2018 The Authors. Published by Elsevier Ltd.. All rights reserved.

  16. Diatomáceas epilíticas de águas oligotróficas e ácidas do Sudeste do Brasil Epilithic diatoms from acidic and oligotrophic waters in Southeast Brazil

    Directory of Open Access Journals (Sweden)

    Luís Gustavo de Castro Canani

    2011-03-01

    Full Text Available Poucos estudos tem abordado a flora de diatomáceas de sistemas oligotróficos do Brasil. São apresentados os resultados da composição taxonômica e distribuição espacial e temporal de diatomáceas no rio do Salto, situado no Parque Estadual do Ibitipoca, Minas Gerais (21º40'-21º44'S e 43º52'-43º55'W. As águas desse rio possuem pH entre 4,2 e 5,5 e concentração de ortofosfato entre 1,37 e 10,98 µg.L-1. O estudo baseia-se na análise de 80 amostras coletadas em oito estações no leito rochoso do rio, em janeiro e julho de 2004, períodos de chuva e estiagem, respectivamente. Um total de 15 espécies e duas variedades taxonômicas, distribuídas em oito gêneros e oito famílias foram descritas e ilustradas, com destaque para o gênero Eunotia Ehrenberg. O estudo sobre diatomáceas bentônicas em ambientes lóticos é pioneiro no estado de Minas Gerais, sendo registradas 14 novas citações, das quais Fragilariforma stevensonii Metzeltin & Lange-Bertalot, Eunotia pirarucu Metzeltin & Lange Betalot, Nupela giluwensis Vyverman & Compère e Sellaphora blackfordensis Mann & Droop são primeiros registros para o Brasil.Few studies have been done on the diatom flora of acidic and oligotrophic environments from Brazil. We present the taxonomic composition and distribution of diatoms of Salto River, situated at Ibitipoca State Park, Minas Gerais (21º40'-21º44'S; 43º52'-43º55'W. The pH values ranged from 4.2 to 5.5 and orthophosphate was between 1.37 and 10.98 µg.L-1. The study is based on the analysis of 80 samples collected at eight stations in the rocky stream bed, in January and July 2004, rainy and dry seasons, respectively. A total of 15 species and two taxonomic varieties distributed in eight genera and eight families were described and illustrated, notably the Eunotia Ehrenberg genus. The study of benthic diatoms in lotic systems is pioneer in Minas Gerais state; 14 new records were recorded of which Fragilariforma stevensonii

  17. Temporal Succession of Phytoplankton Assemblages in a Tidal Creek System of the Sundarbans Mangroves: An Integrated Approach

    Directory of Open Access Journals (Sweden)

    Dola Bhattacharjee

    2013-01-01

    Full Text Available Sundarbans, the world's largest mangrove ecosystem, is unique and biologically diverse. A study was undertaken to track temporal succession of phytoplankton assemblages at the generic level (≥10 µm encompassing 31 weeks of sampling (June 2010–May 2011 in Sundarbans based on microscopy and hydrological measurements. As part of this study, amplification and sequencing of type ID rbcL subunit of RuBisCO enzyme were also applied to infer chromophytic algal groups (≤10 µm size from one of the study points. We report the presence of 43 genera of Bacillariophyta, in addition to other phytoplankton groups, based on microscopy. Phytoplankton cell abundance, which was highest in winter and spring, ranged between 300 and 27,500 cells/L during this study. Cell biovolume varied between winter of 2010 (90–35281.04 µm3 and spring-summer of 2011 (52–33962.24 µm3. Winter supported large chain forming diatoms, while spring supported small sized diatoms, followed by other algal groups in summer. The clone library approach showed dominance of Bacillariophyta-like sequences, in addition to Cryptophyta-, Haptophyta-, Pelagophyta-, and Eustigmatophyta-like sequences which were detected for the first time highlighting their importance in mangrove ecosystem. This study clearly shows that a combination of microscopy and molecular tools can improve understanding of phytoplankton assemblages in mangrove environments.

  18. Scale-dependent effects of land cover on water physico-chemistry and diatom-based metrics in a major river system, the Adour-Garonne basin (South Western France)

    International Nuclear Information System (INIS)

    Tudesque, Loïc; Tisseuil, Clément; Lek, Sovan

    2014-01-01

    The scale dependence of ecological phenomena remains a central issue in ecology. Particularly in aquatic ecology, the consideration of the accurate spatial scale in assessing the effects of landscape factors on stream condition is critical. In this context, our study aimed at assessing the relationships between multi-spatial scale land cover patterns and a variety of water quality and diatom metrics measured at the stream reach level. This investigation was conducted in a major European river system, the Adour-Garonne river basin, characterized by a wide range of ecological conditions. Redundancy analysis (RDA) and variance partitioning techniques were used to disentangle the different relationships between land cover, water-chemistry and diatom metrics. Our results revealed a top-down “cascade effect” indirectly linking diatom metrics to land cover patterns through water physico-chemistry, which occurred at the largest spatial scales. In general, the strength of the relationships between land cover, physico-chemistry, and diatoms was shown to increase with the spatial scale, from the local to the basin scale, emphasizing the importance of continuous processes of accumulation throughout the river gradient. Unexpectedly, we established that the influence of land cover on the diatom metric was of primary importance both at the basin and local scale, as a result of discontinuous but not necessarily antagonist processes. The most detailed spatial grain of the Corine land cover classification appeared as the most relevant spatial grain to relate land cover to water chemistry and diatoms. Our findings provide suitable information to improve the implementation of effective diatom-based monitoring programs, especially within the scope of the European Water Framework Directive. - Highlights: •The spatial scale dependence of the “cascade effect” in a river system has been demonstrated. •The strength of the relationships between land cover and diatoms through

  19. The Phytophthora species assemblage and diversity in riparian alder ecosystems of western Oregon, USA.

    Science.gov (United States)

    Sims, Laura Lee; Sutton, Wendy; Reeser, Paul; Hansen, Everett M

    2015-01-01

    Phytophthora species were systematically sampled, isolated, identified and compared for presence in streams, soil and roots of alder (Alnus species) dominated riparian ecosystems in western Oregon. We describe the species assemblage and evaluate Phytophthora diversity associated with alder. We recovered 1250 isolates of 20 Phytophthora species. Only three species were recovered from all substrates (streams, soil, alder roots): P. gonapodyides, the informally described "P. taxon Pgchlamydo", and P. siskiyouensis. P. alni ssp. uniformis along with five other species not previously recovered in Oregon forests are included in the assemblage: P.citricola s.l., P. gregata, P. gallica, P. nicotianae and P. parsiana. Phytophthora species diversity was greatest in downstream riparian locations. There was no significant difference in species diversity comparing soil and unwashed roots (the rhizosphere) to stream water. There was a difference between the predominating species from the rhizosphere compared to stream water. The most numerous species was the informally described "P. taxon Oaksoil", which was mainly recovered from, and most predominant in, stream water. The most common species from riparian forest soils and alder root systems was P. gonapodyides. © 2015 by The Mycological Society of America.

  20. Responses of diatom communities to hydrological processes during rainfall events

    Science.gov (United States)

    Wu, Naicheng; Faber, Claas; Ulrich, Uta; Fohrer, Nicola

    2015-04-01

    The importance of diatoms as a tracer of hydrological processes has been recently recognized (Pfister et al. 2009, Pfister et al. 2011, Tauro et al. 2013). However, diatom variations in a short-term scale (e.g., sub-daily) during rainfall events have not been well documented yet. In this study, rainfall event-based diatom samples were taken at the outlet of the Kielstau catchment (50 km2), a lowland catchment in northern Germany. A total of nine rainfall events were caught from May 2013 to April 2014. Non-metric multidimensional scaling (NMDS) revealed that diatom communities of different events were well separated along NMDS axis I and II, indicating a remarkable temporal variation. By correlating water level (a proxy of discharge) and different diatom indices, close relationships were found. For example, species richness, biovolume (μm3), Shannon diversity and moisture index01 (%, classified according to van Dam et al. 1994) were positively related with water level at the beginning phase of the rainfall (i.e. increasing limb of discharge peak). However, in contrast, during the recession limb of the discharge peak, diatom indices showed distinct responses to water level declines in different rainfall events. These preliminary results indicate that diatom indices are highly related to hydrological processes. The next steps will include finding out the possible mechanisms of the above phenomena, and exploring the contributions of abiotic variables (e.g., hydrologic indices, nutrients) to diatom community patterns. Based on this and ongoing studies (Wu et al. unpublished data), we will incorporate diatom data into End Member Mixing Analysis (EMMA) and select the tracer set that is best suited for separation of different runoff components in our study catchment. Keywords: Diatoms, Rainfall event, Non-metric multidimensional scaling, Hydrological process, Indices References: Pfister L, McDonnell JJ, Wrede S, Hlúbiková D, Matgen P, Fenicia F, Ector L, Hoffmann L

  1. CO2 induced growth response in a diatom dominated phytoplankton community from SW Bay of Bengal coastal water

    Science.gov (United States)

    Biswas, Haimanti; Shaik, Aziz Ur Rahman; Bandyopadhyay, Debasmita; Chowdhury, Neha

    2017-11-01

    The ongoing increase in surface seawater CO2 level could potentially impact phytoplankton primary production in coastal waters; however, CO2 sensitivity studies on tropical coastal phytoplankton assemblages are rare. The present study investigated the interactive impacts of variable CO2 level, light and zinc (Zn) addition on the diatom dominated phytoplankton assemblages from the western coastal Bay of Bengal. Increased CO2 supply enhanced particulate organic matter (POC) production; a concomitant depletion in δ13CPOM values at elevated CO2 suggested increased CO2 diffusive influx inside the cell. Trace amount of Zn added under low CO2 level accelerated growth probably by accelerating Zn-Carbonic Anhydrase activity which helps in converting bicarbonate ion to CO2. Almost identical values of δ13CPOM in the low CO2 treated cells grown with and without Zn indicated a low discrimination between 13C and 12C probably due to bicarbonate uptake. These evidences collectively indicated the existence of the carbon concentration mechanisms (CCMs) at low CO2. A minimum growth rate was observed at low CO2 and light limited condition indicating light dependence of CCMs activity. Upon the increase of light and CO2 level, growth response was maximum. The cells grown in the low CO2 levels showed higher light stress (higher values of both diatoxanthin index and the ratio of photo-protective to light-harvesting pigments) that was alleviated by both increasing CO2 supply and Zn addition (probably by efficient light energy utilization in presence of adequate CO2). This is likely that the diatom dominated phytoplankton communities benefited from the increasing CO2 supply and thus may enhance primary production in response to any further increase in coastal water CO2 levels and can have large biogeochemical consequences in the study area.

  2. Life history theory predicts fish assemblage response to hydrologic regimes.

    Science.gov (United States)

    Mims, Meryl C; Olden, Julian D

    2012-01-01

    The hydrologic regime is regarded as the primary driver of freshwater ecosystems, structuring the physical habitat template, providing connectivity, framing biotic interactions, and ultimately selecting for specific life histories of aquatic organisms. In the present study, we tested ecological theory predicting directional relationships between major dimensions of the flow regime and life history composition of fish assemblages in perennial free-flowing rivers throughout the continental United States. Using long-term discharge records and fish trait and survey data for 109 stream locations, we found that 11 out of 18 relationships (61%) tested between the three life history strategies (opportunistic, periodic, and equilibrium) and six hydrologic metrics (two each describing flow variability, predictability, and seasonality) were statistically significant (P history strategies, with 82% of all significant relationships observed supporting predictions from life history theory. Specifically, we found that (1) opportunistic strategists were positively related to measures of flow variability and negatively related to predictability and seasonality, (2) periodic strategists were positively related to high flow seasonality and negatively related to variability, and (3) the equilibrium strategists were negatively related to flow variability and positively related to predictability. Our study provides important empirical evidence illustrating the value of using life history theory to understand both the patterns and processes by which fish assemblage structure is shaped by adaptation to natural regimes of variability, predictability, and seasonality of critical flow events over broad biogeographic scales.

  3. Rotation harmonics for a numerical diatomic potential

    International Nuclear Information System (INIS)

    Kobeissi, H.; Korek, M.

    1983-01-01

    The problem of the determination of the rotation harmonics phi 1 , phi 2 , ... for the case of a numerical diatomic potential is considered. These harmonics defined in a recent work by psisub(vJ) = psisub(vO) + lambda 2 phi 2 + ... (where psisub(vJ) is the wave function of the vibration level v and the rotation level J, and lambda = J(J+1)) are studied for the case of the Dunham potential and for a numerical potential defined by the coordinates of its turning points with polynomial interpolations and extrapolations. It is proved that the analytical expressions of the harmonics phi 1 , phi 2 , ... reduce to polynomials where the coefficients are simply related to those of the potential in the case of the Dunham potential, and to the coordinates of the turning points in the case of the numerical potential. The numerical application is simple. The examples presented show that the vibration-rotation wave function psisub(vJ) calculated by using two harmonics only is ''exact'' up to eight significant figures

  4. Diatomic molecule vibrational potentials: Accuracy of representations

    International Nuclear Information System (INIS)

    Engelke, R.

    1978-01-01

    A method is presented for increasing the radius of convergence of certain representations of diatomic molecule vibrational potentials. The method relies on using knowledge of the analytic structure of such potentials to the maximum when attempting to approximate them. The known singular point (due to the centrifugal and/or Coulomb potentials) at zero internuclear separation should be included in its exact form in an approximate representation. The efficacy of this idea is tested [using Peek's ''exact'' numerical Born-Oppenheimer potential for the (1ssigma/sub g/) 2 Σ + /sub g/ state of H + 2 as a test problem] when the representational form is the series of (1) Dunham, (2) Simons, Parr, and Finlan, (3) Thakkar, and (4) Ogilvie-Tipping, and also (5) when the form is a [2, 2] or a [3, 3] Pade approximant. Significant improvements in accuracy are obtained in some of these cases, particularly on the inner wall of the potential. A comparison of the effectiveness of the five methods is made both with and without the origin behavior being included exactly. This is useful in itself as no comprehensive accuracy comparison of the standard representations seems to have appeared in the literature. The Ogilvie-Tipping series, corrected at the origin for singular behavior, is the best representation presently available for states analogous to the (1ssigma/sub g/) 2 Σ + /sub g/ state of H + 2

  5. Mesoscale distribution of dominant diatom species relative to the hydrographical field along the Antarctic Polar Front

    Science.gov (United States)

    Smetacek, Victor; Klaas, Christine; Menden-Deuer, Susanne; Rynearson, Tatiana A.

    The quantitative distribution of dominant phytoplankton species was mapped at high spatial resolution (15 km spacing) during a quasi-synoptic, mesoscale survey of hydrographical, chemical, pigment, and zooplankton fields carried out along the Antarctic Polar Front within a grid 140×130 km 2 during austral summer. A rapid assessment method for quantifying phytoplankton species by microscopy in concentrated samples on board enabled estimation of total biomass and that of dominant species at hourly sampling intervals. The biomass distribution pattern derived from this method was remarkably coherent and correlated very well with chlorophyll concentrations and the location of different water masses covered by the grid. A "background" chlorophyll concentration of 0.5 mg m -3 in the grid could be assigned to the uniformly distributed pico- and nanophytoplankton; all higher values (up to 2.0 mg m -3) were contributed by large diatoms. Three species complexes ( Chaetoceros atlanticus/dichaeta, Pseudo-nitzschia cf. Lineola, and Thalassiothrix antarctica) contributed about one-third each to the biomass. Although all species were found throughout the study area, distinct patterns in abundance emerged: The Thalassiothrix maximum was located north of the frontal jet, Chaetoceros biomass was highest along the jet, and Pseudo-nitzschia was the most uniformly distributed of the three taxa. Since the meridional pattern of biomass and species composition persisted for about 5 weeks, despite heavy grazing pressure of small copepods, we hypothesize that the dominant species reflect the highest degree of grazer protection in the assemblage. This is accomplished by large size, needle-shaped cells, and long spines armed with barbs. We suggest that these persistent species sequester the limiting nutrient—iron—from the assemblage of smaller, less-defended species that must hence have higher turn-over rates.

  6. Species interactions within a fouling diatom community: Roles of nutrients, initial inoculum and competitive strategies

    Digital Repository Service at National Institute of Oceanography (India)

    Mitbavkar, S.; Anil, A

    Diatoms constitute an important component of the fouling community. Although a lot of work has dealt with the fouling diatom community structure, work on the species interactions within the community is still meager. In this regard, a study...

  7. Genotoxicity of cadmium in marine diatom Chaetoceros tenuissimus using the alkaline Comet assay

    Digital Repository Service at National Institute of Oceanography (India)

    Desai, S.R.; Verlecar, X.N.; Nagarajappa; Goswami, U.

    of Cd increased growth of the diatom decreased. Alkaline single-cell gel electrophoresis (Comet assay) method, which is highly sensitive in detection of DNA damage in eukaryotic cells, was used to observe genomic changes in marine diatom cells. DNA...

  8. Diatom community dynamics in a tropical, monsoon-influenced environment: West coast of India

    Digital Repository Service at National Institute of Oceanography (India)

    DeCosta, P.M.; Anil, A.C.

    Diatom communities are influenced by environmental perturbations, such as the monsoon system that impact the niche opportunities of species. To discern the influence of the monsoon system on diatom community structure, we sampled during two...

  9. Fouling diatom community with reference to substratum variability in tropical marine environment

    Digital Repository Service at National Institute of Oceanography (India)

    Mitbavkar, S.; Desai, D.V.; Khandeparker, L.; Anil, A.C.; Wagh, A.B.

    form encountered. The paper deals with the qualitative and quantitative aspects of diatom colonization, their community structure, and correlation between the prevailing diatom population in the environment and that in the fouling community...

  10. Growth inhibition of periphytic diatoms by methanol extracts of sponges and holothurians

    Digital Repository Service at National Institute of Oceanography (India)

    Mokashe, S.S.; Garg, A; Anil, A; Wagh, A

    Crude methanol extracts of a holothurian Holothuria leucospilota, and two sponges Craniella sp. and Ircinia ramosa were tested for their inhibitory effects on the growth of two marine diatoms, Navicula subinflata and N. crucicula, by diatom plating...

  11. Computation of diatomic molecular spectra for selected transitions of aluminum monoxide, cyanide, diatomic carbon, and titanium monoxide

    Energy Technology Data Exchange (ETDEWEB)

    Parigger, Christian G., E-mail: cparigge@tennessee.edu [The University of Tennessee/University of Tennessee Space Institute, Center for Laser Applications, 411 B.H. Goethert Parkway, Tullahoma, TN 37388-9700 (United States); Woods, Alexander C.; Surmick, David M.; Gautam, Ghaneshwar; Witte, Michael J. [The University of Tennessee/University of Tennessee Space Institute, Center for Laser Applications, 411 B.H. Goethert Parkway, Tullahoma, TN 37388-9700 (United States); Hornkohl, James O. [Hornkohl Consulting, Tullahoma, TN 37388 (United States)

    2015-05-01

    Laser ablation studies with laser-induced breakdown spectroscopy (LIBS) typically emphasize atomic species yet fingerprints from molecular species can occur subsequently or concurrently. In this work, selected molecular transitions of aluminum monixide (AlO), diatomic carbon (C{sub 2}), cyanide (CN), and titanium monoxide (TiO) are accurately computed. Line strength tables are used to describe the radiative transitions of diatomic molecules primarily in the visible, optical region. Details are elaborated of the computational procedure that allows one to utilize diatomic spectra as a predictive and as a diagnostic tool. In order to create a computed spectrum, the procedure requires information regarding the temperature of the diatomic transitions along with other input such as the spectral resolution. When combined with a fitting algorithm to optimize such parameters, this procedure is used to infer information from an experimentally obtained spectrum. Furthermore, the programs and data files are provided for LIBS investigations that also reveal AlO, C{sub 2}, CN, and TiO diatomic spectra. - Highlights: • We present a program for fitting of molecular spectra. • This includes data base for AlO, C{sub 2}, CN, and TiO. • We discuss the details of the program including fitting. • We show computed examples and reference current work.

  12. Circular random motion in diatom gliding under isotropic conditions

    International Nuclear Information System (INIS)

    Gutiérrez-Medina, Braulio; Maldonado, Ana Iris Peña; Guerra, Andrés Jiménez; Rubio, Yadiralia Covarrubias; Meza, Jessica Viridiana García

    2014-01-01

    How cells migrate has been investigated primarily for the case of trajectories composed by joined straight segments. In contrast, little is known when cellular motion follows intrinsically curved paths. Here, we use time-lapse optical microscopy and automated trajectory tracking to investigate how individual cells of the diatom Nitzschia communis glide across surfaces under isotropic environmental conditions. We find a distinct kind of random motion, where trajectories are formed by circular arcs traveled at constant speed, alternated with random stoppages, direction reversals and changes in the orientation of the arcs. Analysis of experimental and computer-simulated trajectories show that the circular random motion of diatom gliding is not optimized for long-distance travel but rather for recurrent coverage of limited surface area. These results suggest that one main biological role for this type of diatom motility is to efficiently build the foundation of algal biofilms. (paper)

  13. Bioactive glass 45S5 from diatom biosilica

    Directory of Open Access Journals (Sweden)

    Luqman A. Adams

    2017-12-01

    Full Text Available A major draw-back to large scale production of bioactive glasses is the high cost of the standard silica precursor, usually tetraethyl orthosilicate (TEOS. The current study describes a novel sol–gel preparation of 45S5 bioactive glass using diatom biosilica from cultured cells of the diatom, Aulacoseira granulata as substitute to TEOS. The glass formed was characterized using mechanical tester, scanning electron microscopy (SEM, energy dispersive X-ray analysis (EDX, X-ray diffraction (XRD and Fourier transform infrared (FTIR spectroscopy. Results showed that the glass possessed a compressive strength of 3.75 ± 0.18 and formed carbonated hydroxyapatite (HCA within 7 days in simulated body fluid (SBF, attributable to good surface chemistry. The performance of the glass was compared with that of those formed using TEOS. Diatom biosilica could be a potential economically friendly starting material for large scale fabrication of bioactive glasses.

  14. A new cell primo-culture method for freshwater benthic diatom communities

    OpenAIRE

    Debenest, Timothée; Silvestre, Jérôme; Coste, Michel; Delmas, François; Pinelli, Eric

    2009-01-01

    A new cell primo-culture method was developed for the benthic diatom community isolated from biofilm sampled in rivers. The approach comprised three steps: (1) scraping biofilm from river pebbles, (2) diatom isolation from biofilm, and (3) diatom community culture. With a view to designing a method able to stimulate the growth of diatoms, to limit the development of other microorganisms, and to maintain in culture a community similar to the original natural one, different factors were test...

  15. Cenozoic planktonic marine diatom diversity and correlation to climate change

    Science.gov (United States)

    Lazarus, David; Barron, John; Renaudie, Johan; Diver, Patrick; Türke, Andreas

    2014-01-01

    Marine planktonic diatoms export carbon to the deep ocean, playing a key role in the global carbon cycle. Although commonly thought to have diversified over the Cenozoic as global oceans cooled, only two conflicting quantitative reconstructions exist, both from the Neptune deep-sea microfossil occurrences database. Total diversity shows Cenozoic increase but is sample size biased; conventional subsampling shows little net change. We calculate diversity from a separately compiled new diatom species range catalog, and recalculate Neptune subsampled-in-bin diversity using new methods to correct for increasing Cenozoic geographic endemism and decreasing Cenozoic evenness. We find coherent, substantial Cenozoic diversification in both datasets. Many living cold water species, including species important for export productivity, originate only in the latest Miocene or younger. We make a first quantitative comparison of diatom diversity to the global Cenozoic benthic ∂18O (climate) and carbon cycle records (∂13C, and 20-0 Ma pCO2). Warmer climates are strongly correlated with lower diatom diversity (raw: rho = .92, p2 were only moderately higher than today. Diversity is strongly correlated to both ∂13C and pCO2 over the last 15 my (for both: r>.9, detrended r>.6, all p<.001), but only weakly over the earlier Cenozoic, suggesting increasingly strong linkage of diatom and climate evolution in the Neogene. Our results suggest that many living marine planktonic diatom species may be at risk of extinction in future warm oceans, with an unknown but potentially substantial negative impact on the ocean biologic pump and oceanic carbon sequestration. We cannot however extrapolate our my-scale correlations with generic climate proxies to anthropogenic time-scales of warming without additional species-specific information on proximate ecologic controls.

  16. Cenozoic planktonic marine diatom diversity and correlation to climate change.

    Directory of Open Access Journals (Sweden)

    David Lazarus

    Full Text Available Marine planktonic diatoms export carbon to the deep ocean, playing a key role in the global carbon cycle. Although commonly thought to have diversified over the Cenozoic as global oceans cooled, only two conflicting quantitative reconstructions exist, both from the Neptune deep-sea microfossil occurrences database. Total diversity shows Cenozoic increase but is sample size biased; conventional subsampling shows little net change. We calculate diversity from a separately compiled new diatom species range catalog, and recalculate Neptune subsampled-in-bin diversity using new methods to correct for increasing Cenozoic geographic endemism and decreasing Cenozoic evenness. We find coherent, substantial Cenozoic diversification in both datasets. Many living cold water species, including species important for export productivity, originate only in the latest Miocene or younger. We make a first quantitative comparison of diatom diversity to the global Cenozoic benthic ∂(18O (climate and carbon cycle records (∂(13C, and 20-0 Ma pCO2. Warmer climates are strongly correlated with lower diatom diversity (raw: rho = .92, p.9, detrended r>.6, all p<.001, but only weakly over the earlier Cenozoic, suggesting increasingly strong linkage of diatom and climate evolution in the Neogene. Our results suggest that many living marine planktonic diatom species may be at risk of extinction in future warm oceans, with an unknown but potentially substantial negative impact on the ocean biologic pump and oceanic carbon sequestration. We cannot however extrapolate our my-scale correlations with generic climate proxies to anthropogenic time-scales of warming without additional species-specific information on proximate ecologic controls.

  17. Effect of ageing on survival of benthic diatom propagules

    Digital Repository Service at National Institute of Oceanography (India)

    Anil, A.C.; Mitbavkar, S.; De; Hegde, S.; De; Meher, S.S.; Banerjee, D.

    unfavorable for vegetative growth, many diatoms form resting stages to survive cell degradation or death (Anderson, 1975; Malone, 1980; Hargraves and French, 1983; Fryxell, 1990). Various external factors like availability of nutrients (N, P, Fe, Si.... 128, 497-508. 15 Lewis, J., Harris, A.S.D., Jones, K.J., Edmonds, R.L., 1999. Long-term survival of marine planktonic diatoms and dinoflagellates in stored sediment samples. J. Plank. Res. 21, 343- 354. Malone, T.C., 1980. Algal size. In...

  18. Biological monitoring of lotic ecosystems: the role of diatoms

    Directory of Open Access Journals (Sweden)

    T. Bere

    Full Text Available Increasing anthropogenic influence on lotic environments as a result of civilisation has captured public interest because of the consequent problems associated with deterioration of water quality. Various biological monitoring methods that provide a direct measure of ecological integrity by using the response of biota to environmental changes have been developed to monitor the ecological status of lotic environments. Diatoms have been used extensively in this regard and this review attempts to summarise the basic concepts associated with biological monitoring using benthic diatoms. Where possible, examples from work carried out in Brazil are used.

  19. Biological monitoring of lotic ecosystems: the role of diatoms.

    Science.gov (United States)

    Bere, T; Tundisi, J G

    2010-08-01

    Increasing anthropogenic influence on lotic environments as a result of civilisation has captured public interest because of the consequent problems associated with deterioration of water quality. Various biological monitoring methods that provide a direct measure of ecological integrity by using the response of biota to environmental changes have been developed to monitor the ecological status of lotic environments. Diatoms have been used extensively in this regard and this review attempts to summarise the basic concepts associated with biological monitoring using benthic diatoms. Where possible, examples from work carried out in Brazil are used.

  20. The UV filtering potential of drop-casted layers of frustules of three diatom species

    DEFF Research Database (Denmark)

    Su, Yanyan; Lenau, Torben Anker; Gundersen, Emil

    2018-01-01

    Diatoms are in focus as biological materials for a range of photonic applications. Many of theseapplications would require embedding a multitude of diatoms in a matrix (e.g. paint, crème or lacquer); however, most studies on the photonic and spectral properties of diatoms frustules (silica walls)...

  1. Fluxes of diatoms in the Dona Paula Bay, west coast of India

    Digital Repository Service at National Institute of Oceanography (India)

    Garg, A.; Bhaskar, P.V.

    of POC and diatom carbon was 251 and 0.39 mg C m sup(-2) day sup(-1), respectively. The diatom carbon accounted for 0.15% of the POC flux. Mass flux of diatoms showed significant negative correlation with the concentration of nitrate and phosphate...

  2. Phytobenthos and water quality of mountain streams in the Bohemian Forest under the influence of recreational activity

    Czech Academy of Sciences Publication Activity Database

    Lukavský, Jaromír; Moravcová, A.; Nedbalová, Linda; Rauch, Ota

    2006-01-01

    Roč. 61, Suppl.20 (2006), S533-S542 ISSN 0006-3088 Grant - others:GA MŽP(CZ) SK/620/15/03 Institutional research plan: CEZ:AV0Z60050516 Keywords : Phytobentos * mountain stream * diatoms Subject RIV: DO - Wilderness Conservation Impact factor: 0.213, year: 2006

  3. Reproduction of a fish assemblage in the state of São Paulo, southeastern Brazil

    Directory of Open Access Journals (Sweden)

    LM. Gomiero

    Full Text Available Fish reproductions were studied in two river basins (Corumbataí and Jacaré-Pepira basins in the State of São Paulo, southeastern Brazil. In the Corumbataí basin, four sites were sampled: Cabeça River, Lapa Stream, Passa-Cinco River, and Corumbataí River; in the Jacaré-Pepira basin, three sites were sampled: Tamanduá Stream, Jacaré-Pepira River, and Água Branca Stream. A total of 12 bimonthly samples were made. Fish equipment included gill nets, purse seines, sieves, and traps. The main objective of this study was to characterize the fish assemblage regarding their reproductive biology and to compare these reproductive traits between both river basins. Most individuals with gonads in stage C (mature and in stage D (empty gonads were captured in the spring and summer. Multiple spawn and parental care were common strategies, which guaranteed offspring survivorship in unstable conditions.

  4. Application of the Hydroecological Integrity Assessment Process for Missouri Streams

    Science.gov (United States)

    Kennen, Jonathan G.; Henriksen, James A.; Heasley, John; Cade, Brian S.; Terrell, James W.

    2009-01-01

    Natural flow regime concepts and theories have established the justification for maintaining or restoring the range of natural hydrologic variability so that physiochemical processes, native biodiversity, and the evolutionary potential of aquatic and riparian assemblages can be sustained. A synthesis of recent research advances in hydroecology, coupled with stream classification using hydroecologically relevant indices, has produced the Hydroecological Integrity Assessment Process (HIP). HIP consists of (1) a regional classification of streams into hydrologic stream types based on flow data from long-term gaging-station records for relatively unmodified streams, (2) an identification of stream-type specific indices that address 11 subcomponents of the flow regime, (3) an ability to establish environmental flow standards, (4) an evaluation of hydrologic alteration, and (5) a capacity to conduct alternative analyses. The process starts with the identification of a hydrologic baseline (reference condition) for selected locations, uses flow data from a stream-gage network, and proceeds to classify streams into hydrologic stream types. Concurrently, the analysis identifies a set of non-redundant and ecologically relevant hydrologic indices for 11 subcomponents of flow for each stream type. Furthermore, regional hydrologic models for synthesizing flow conditions across a region and the development of flow-ecology response relations for each stream type can be added to further enhance the process. The application of HIP to Missouri streams identified five stream types ((1) intermittent, (2) perennial runoff-flashy, (3) perennial runoff-moderate baseflow, (4) perennial groundwater-stable, and (5) perennial groundwater-super stable). Two Missouri-specific computer software programs were developed: (1) a Missouri Hydrologic Assessment Tool (MOHAT) which is used to establish a hydrologic baseline, provide options for setting environmental flow standards, and compare past and

  5. Diatom-induced silicon isotopic fractionation in Antarctic sea ice

    Science.gov (United States)

    Francois, F.; Damien, C.; Jean-Louis, T.; Anthony, W.; Luc, A.

    2006-12-01

    We measured silicon-isotopic composition of dissolved silicon and biogenic silica collected by sequential melting from spring 2003 Antarctic pack ice (Australian sector). Sea ice is a key ecosystem in the Southern Ocean and its melting in spring has been often thought to have a seeding effect for the surface waters, triggering blooms in the mixed layer. This work is the first investigation of the silicon isotopes' proxy in sea ice and allows to estimate the activity of sea-ice diatoms in the different brine structures and the influence of sea- ice diatoms on the spring ice edge blooms. The relative use of the dissolved silicon pool by sea-ice diatoms is usually assessed by calculating nutrient:salinity ratios in the brines. However such an approach is biased by difficulties in evaluating the initial nutrient concentrations in the different brines structures, and by the impossibility to account for late sporadic nutrient replenishments. The silicon-isotopic composition of biogenic silica is a convenient alternative since it integrates an average Si utilization on all generations of diatoms. Measurements were performed on a MC-ICP-MS, in dry plasma mode using external Mg doping. Results are expressed as delta29Si relative to the NBS28 standard. From three sea ice cores with contrasted physico-chemical characteristics, we report significant isotopic fractionations linked to the diatoms activity, with distinct silicon biogeochemical dynamics between different brine structure. The diatoms in snow ice and in brine pockets of frazil or congelation ice have the most positive silicon-isotopic composition (+0.53 to +0.86 p.mil), indicating that they grow in a closed system and use a significant part of the small dissolved silicon pool. In the brine channels and skeletal layer, diatoms display a relatively less positive Si-isotopic composition (+0.41 to +0.70 p.mil), although it is still heavier compared to equilibrium fractionation (+0.38 p.mil). This suggests that they have

  6. Rapid biotic homogenization of marine fish assemblages

    Science.gov (United States)

    Magurran, Anne E.; Dornelas, Maria; Moyes, Faye; Gotelli, Nicholas J.; McGill, Brian

    2015-01-01

    The role human activities play in reshaping biodiversity is increasingly apparent in terrestrial ecosystems. However, the responses of entire marine assemblages are not well-understood, in part, because few monitoring programs incorporate both spatial and temporal replication. Here, we analyse an exceptionally comprehensive 29-year time series of North Atlantic groundfish assemblages monitored over 5° latitude to the west of Scotland. These fish assemblages show no systematic change in species richness through time, but steady change in species composition, leading to an increase in spatial homogenization: the species identity of colder northern localities increasingly resembles that of warmer southern localities. This biotic homogenization mirrors the spatial pattern of unevenly rising ocean temperatures over the same time period suggesting that climate change is primarily responsible for the spatial homogenization we observe. In this and other ecosystems, apparent constancy in species richness may mask major changes in species composition driven by anthropogenic change. PMID:26400102

  7. Microhabitat influence on larval fish assemblages within ...

    Science.gov (United States)

    We examined larval and juvenile fish assemblage structure in relation to microhabitat variables within the St. Louis River estuary, a drowned river mouth of Lake Superior. Fish were sampled in vegetated beds throughout the estuary, across a gradient of vegetation types and densities (including disturbed, preserved and post-restoration sites). Canonical correspondence analysis, relating species abundances to environmental variables revealed that plant species richness, turbidity and aquatic plant cover were most influential in structuring assemblages. Results from this microhabitat analysis at this crucial life stage has potential to inform wetland restoration efforts within the St. Louis River and other Great Lake coastal wetlands. not applicable

  8. Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus

    KAUST Repository

    Mock, Thomas; Otillar, Robert P.; Strauss, Jan; McMullan, Mark; Paajanen, Pirita; Schmutz, Jeremy; Salamov, Asaf; Sanges, Remo; Toseland, Andrew; Ward, Ben J.; Allen, Andrew E.; Dupont, Christopher L.; Frickenhaus, Stephan; Maumus, Florian; Veluchamy, Alaguraj; Wu, Taoyang; Barry, Kerrie W.; Falciatore, Angela; Ferrante, Maria I.; Fortunato, Antonio E.; Glö ckner, Gernot; Gruber, Ansgar; Hipkin, Rachel; Janech, Michael G.; Kroth, Peter G.; Leese, Florian; Lindquist, Erika A.; Lyon, Barbara R.; Martin, Joel; Mayer, Christoph; Parker, Micaela; Quesneville, Hadi; Raymond, James A.; Uhlig, Christiane; Valas, Ruben E.; Valentin, Klaus U.; Worden, Alexandra Z.; Armbrust, E. Virginia; Clark, Matthew D.; Bowler, Chris; Green, Beverley R.; Moulton, Vincent; Oosterhout, Cock van; Grigoriev, Igor V.

    2017-01-01

    The Southern Ocean houses a diverse and productive community of organisms. Unicellular eukaryotic diatoms are the main primary producers in this environment, where photosynthesis is limited by low concentrations of dissolved iron and large seasonal fluctuations in light, temperature and the extent of sea ice. How diatoms have adapted to this extreme environment is largely unknown. Here we present insights into the genome evolution of a cold-adapted diatom from the Southern Ocean, Fragilariopsis cylindrus, based on a comparison with temperate diatoms. We find that approximately 24.7 per cent of the diploid F. cylindrus genome consists of genetic loci with alleles that are highly divergent (15.1 megabases of the total genome size of 61.1 megabases). These divergent alleles were differentially expressed across environmental conditions, including darkness, low iron, freezing, elevated temperature and increased CO2. Alleles with the largest ratio of non-synonymous to synonymous nucleotide substitutions also show the most pronounced condition-dependent expression, suggesting a correlation between diversifying selection and allelic differentiation. Divergent alleles may be involved in adaptation to environmental fluctuations in the Southern Ocean.

  9. Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus

    KAUST Repository

    Mock, Thomas

    2017-01-17

    The Southern Ocean houses a diverse and productive community of organisms. Unicellular eukaryotic diatoms are the main primary producers in this environment, where photosynthesis is limited by low concentrations of dissolved iron and large seasonal fluctuations in light, temperature and the extent of sea ice. How diatoms have adapted to this extreme environment is largely unknown. Here we present insights into the genome evolution of a cold-adapted diatom from the Southern Ocean, Fragilariopsis cylindrus, based on a comparison with temperate diatoms. We find that approximately 24.7 per cent of the diploid F. cylindrus genome consists of genetic loci with alleles that are highly divergent (15.1 megabases of the total genome size of 61.1 megabases). These divergent alleles were differentially expressed across environmental conditions, including darkness, low iron, freezing, elevated temperature and increased CO2. Alleles with the largest ratio of non-synonymous to synonymous nucleotide substitutions also show the most pronounced condition-dependent expression, suggesting a correlation between diversifying selection and allelic differentiation. Divergent alleles may be involved in adaptation to environmental fluctuations in the Southern Ocean.

  10. Functionalized diatom silica microparticles for removal of mercury ions

    International Nuclear Information System (INIS)

    Yu Yang; Addai-Mensah, Jonas; Losic, Dusan

    2012-01-01

    Diatom silica microparticles were chemically modified with self-assembled monolayers of 3-mercaptopropyl-trimethoxysilane (MPTMS), 3-aminopropyl-trimethoxysilane (APTES) and n-(2-aminoethyl)-3-aminopropyl-trimethoxysilane (AEAPTMS), and their application for the adsorption of mercury ions (Hg(II)) is demonstrated. Fourier transform infrared spectroscopy and x-ray photoelectron spectroscopy analyses revealed that the functional groups (–SH or –NH 2 ) were successfully grafted onto the diatom silica surface. The kinetics and efficiency of Hg(II) adsorption were markedly improved by the chemical functionalization of diatom microparticles. The relationship among the type of functional groups, pH and adsorption efficiency of mercury ions was established. The Hg(II) adsorption reached equilibrium within 60 min with maximum adsorption capacities of 185.2, 131.7 and 169.5 mg g -1 for particles functionalized with MPTMS, APTES and AEAPTMS, respectively. The adsorption behavior followed a pseudo-second-order reaction model and Langmuirian isotherm. These results show that mercapto- or amino-functionalized diatom microparticles are promising natural, cost-effective and environmentally benign adsorbents suitable for the removal of mercury ions from aqueous solutions.

  11. Effect of Industrial Effluent on the Growth of Marine Diatom ...

    African Journals Online (AJOL)

    The marine centric diatom,Chaetoceros simplex (Ostenfeld, 1901) was exposed to five different concentrations of industrial effluent for 96 hrs to investigate the effect on growth. The physico-chemical parameters viz. colour, odour, temperature, salinity, dissolved oxygen, turbidity, pH, alkalinity, hardness, ammonia, nitrite, ...

  12. Copepod reproduction is unaffected by diatom aldehydes or lipid composition

    DEFF Research Database (Denmark)

    Dutz, Jörg; Koski, Marja; Jonasdottir, Sigrun

    2008-01-01

    We investigated whether reduced reproductive success of copepods fed with diatoms was related to nutritional imbalances with regard to essential lipids or to the production of inhibitory aldehydes. In 10-d laboratory experiments, feeding, egg production, egg hatching success, and fecal pellet...

  13. Colonisation and community structure of benthic diatoms on artificial ...

    African Journals Online (AJOL)

    This was undertaken using tiles as artificial substrates so that we could study how the communities developed after the flood disturbance. The diatom community structure was assessed over a 28-day period following a flood event in October 2012. The Mann Whitney test indicated that there was a statistically significant ...

  14. Diatom distribution in the surficial sediments of Lake Fuxian, Yunnan ...

    African Journals Online (AJOL)

    ajl yemi

    2011-11-30

    Nov 30, 2011 ... (18.2%); there were some phosphorus post-mines which led to higher total phosphorus concentration than that in southern part. The most outstanding characteristic of diatom ... (212 km2 in surface area) is located in the central Yunnan. Province; it is a oligotrophic freshwater lake. It is the second deepest ...

  15. Mercury-induced genotoxicity in marine diatom (Chaetoceros tenuissimus)

    Digital Repository Service at National Institute of Oceanography (India)

    Sarker, S.; Desai, S.R.; Verlecar, X.N.; Sarker, M.S.; Sarkar, A.

    In this paper, we present an evaluation of genotoxic responses in marine diatom, Chaetoceros tenuissimus, isolated from Kandla Creek (lat 23.03° N, long 70.22° E), Gujarat, India, in terms of impairment of DNA integrity as a function...

  16. Temperature affects the silicate morphology in a diatom

    NARCIS (Netherlands)

    Javaheri, N.; Dries, R; Burson, A.; Stal, L.J.; Sloot, P.M.A.; Kaandorp, J.A.

    2015-01-01

    Silica deposition by diatoms, a common component of the phytoplankton, has attracted considerable interest given the importance in ecology and materials science. There has recently been a great deal of research into the biological control of biosilicifcation, yet the in vivo physical and chemical

  17. Temperature affects the silicate morphology in a diatom

    NARCIS (Netherlands)

    Javaheri, N.; Dries, R.; Burson, A.; Stal, L.J.; Sloot, P.M.A.; Kaandorp, J.A.

    2015-01-01

    Silica deposition by diatoms, a common component of the phytoplankton, has attracted considerable interest given the importance in ecology and materials science. There has recently been a great deal of research into the biological control of biosilicifcation, yet the in vivo physical and

  18. Enhancement of the reactive iron pool by marine diatoms

    NARCIS (Netherlands)

    Rijkenberg, Micha J. A.; Gerringa, Loes J. A.; Timmermans, Klaas R.; Fischer, Astrid C.; Kroon, Koos J.; Buma, Anita G. J.; Wolterbeek, Bert Th.; de Baar, Hein J. W.

    2008-01-01

    Short term (2 days) laboratory experiments were performed to study the change in irradiance induced production of Fe(II) in seawater in the presence of two open oceanic Southern Ocean diatom species, Thalassiosira sp. and Chaetoceros brevis. Three irradiance conditions were applied: 1) UVB+UVA+VIS,

  19. The Phaeodactylum genome reveals the evolutionary history of diatom genomes

    Czech Academy of Sciences Publication Activity Database

    Bowler, Ch.; Allen, A. E.; Badger, J. H.; Grimwood, J.; Jabbari, K.; Kuo, A.; Maheswari, U.; Martens, C.; Maumus, F.; Otillar, R. P.; Rayko, E.; Salamov, A.; Vandepoele, K.; Beszteri, B.; Gruber, A.; Heijde, M.; Katinka, M.; Mock, T.; Valentin, K.; Verret, F.; Berges, J. A.; Brownlee, C.; Cadoret, J.-P.; Chiovitti, A.; Choi, Ch. J.; Coesel, S.; De Martino, A.; Detter, J. Ch.; Durkin, C.; Falciatore, A.; Fournet, J.; Haruta, M.; Huysman, M. J. J.; Jenkins, B. D.; Jiroutová, Kateřina; Jorgensen, R. E.; Joubert, Y.; Kaplan, A.; Kröger, N.; Kroth, P. G.; La Roche, J.; Lindquist, E.; Lommer, M.; Martin–Jézéquel, V.; Lopez, P. J.; Lucas, S.; Mangogna, M.; McGinnis, K.; Medlin, L. K.; Montsant, A.; Oudot–Le Secq, M.-P.; Napoli, C.; Oborník, Miroslav; Schnitzler Parker, M.; Petit, J.-L.; Porcel, B. M.; Poulsen, N.; Robison, M.; Rychlewski, L.; Rynearson, T. A.; Schmutz, J.; Shapiro, H.; Siaut, M.; Stanley, M.; Sussman, M. R.; Taylor, A. R.; Vardi, A.; von Dassow, P.; Vyverman, W.; Willis, A.; Wyrwicz, L. S.; Rokhsar, D. S.; Weissenbach, J.; Armbrust, E. V.; Green, B. R.; Van de Peer, Y.; Grigoriev, I. V.

    2008-01-01

    Roč. 456, 13-11-2008 (2008), s. 239-244 ISSN 0028-0836 Institutional research plan: CEZ:AV0Z60220518 Keywords : Phaeodactylum * genome * evolution * diatom Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 31.434, year: 2008

  20. Models for calculation of dissociation energies of homonuclear diatomic molecules

    International Nuclear Information System (INIS)

    Brewer, L.; Winn, J.S.

    1979-08-01

    The variation of known dissociation energies of the transition metal diatomics across the Periodic Table is rather irregular like the bulk sublimation enthalpy, suggesting that the valence-bond model for bulk metallic systems might be applicable to the gaseous diatomic molecules and the various intermediate clusters. Available dissociation energies were converted to valence-state bonding energies considering various degrees of promotion to optimize the bonding. The degree of promotion of electrons to increase the number of bonding electrons is smaller than for the bulk, but the trends in bonding energy parallel the behavior found for the bulk metals. Thus using the established trends in bonding energies for the bulk elements, it was possible to calculate all unknown dissociation energies to provide a complete table of dissociation energies for all M 2 molecules from H 2 to Lr 2 . For solids such as Mg, Al, Si and most of the transition metals, large promotion energies are offset by strong bonding between the valence state atoms. The main question is whether bonding in the diatomics is adequate to sustain extensive promotion. The most extreme example for which a considerable difference would be expected between the bulk and the diatomics would be that of the Group IIA and IIB metals. The first section of this paper which deals with the alkaline earths Mg and Ca demonstrates a significant influence of the excited valence state even for these elements. The next section then expands the treatment to transition metals

  1. Diatoms in peat – dominant producers in a changing environment?

    DEFF Research Database (Denmark)

    Kokfelt, Ulla; Struyf, Eric; Randsalu, Linda

    2009-01-01

    to another, the old vegetation may be suppressed, die out or start to decay, and some time may pass until a new mire vegetation is fully established. Here, we demonstrate that diatoms may thrive during such transitions, creating isolated and shallow peat layers with significantly elevated biogenic silica...

  2. Molecular basis of chromatic adaptation in pennate diatom Phaeodactylum tricornutum

    Czech Academy of Sciences Publication Activity Database

    Herbstová, Miroslava; Bína, David; Koník, P.; Gardian, Zdenko; Vácha, František; Litvín, Radek

    2015-01-01

    Roč. 1847, 6-7 (2015), s. 534-543 ISSN 0005-2728 R&D Projects: GA ČR GBP501/12/G055 Institutional support: RVO:60077344 Keywords : Chromatic adaptation * Diatom * Heterokonta * Light harvesting antenna Subject RIV: CE - Biochemistry Impact factor: 4.864, year: 2015

  3. The effects of phosphorus limitation on carbon metabolism in diatoms.

    Science.gov (United States)

    Brembu, Tore; Mühlroth, Alice; Alipanah, Leila; Bones, Atle M

    2017-09-05

    Phosphorus is an essential element for life, serving as an integral component of nucleic acids, lipids and a diverse range of other metabolites. Concentrations of bioavailable phosphorus are low in many aquatic environments. Microalgae, including diatoms, apply physiological and molecular strategies such as phosphorus scavenging or recycling as well as adjusting cell growth in order to adapt to limiting phosphorus concentrations. Such strategies also involve adjustments of the carbon metabolism. Here, we review the effect of phosphorus limitation on carbon metabolism in diatoms. Two transcriptome studies are analysed in detail, supplemented by other transcriptome, proteome and metabolite data, to gain an overview of different pathways and their responses. Phosphorus, nitrogen and silicon limitation responses are compared, and similarities and differences discussed. We use the current knowledge to propose a suggestive model for the carbon flow in phosphorus-replete and phosphorus-limited diatom cells.This article is part of the themed issue 'The peculiar carbon metabolism in diatoms'. © 2017 The Authors.

  4. Didymosphenia geminata: Algal blooms in oligotrophic streams and rivers

    Science.gov (United States)

    Sundareshwar, P. V.; Upadhayay, S.; Abessa, M.; Honomichl, S.; Berdanier, B.; Spaulding, S. A.; Sandvik, C.; Trennepohl, A.

    2011-05-01

    In recent decades, the diatom Didymosphenia geminata has emerged as nuisance species in river systems around the world. This periphytic alga forms large “blooms” in temperate streams, presenting a counterintuitive result: the blooms occur primarily in oligotrophic streams and rivers, where phosphorus (P) availability typically limits primary production. The goal of this study is to examine how high algal biomass is formed under low P conditions. We reveal a biogeochemical process by which D. geminata mats concentrate P from flowing waters. First, the mucopolysaccaride stalks of D. geminata adsorb both iron (Fe) and P. Second, enzymatic and bacterial processes interact with Fe to increase the biological availability of P. We propose that a positive feedback between total stalk biomass and high growth rate is created, which results in abundant P for cell division. The affinity of stalks for Fe in association with iron-phosphorus biogeochemistry suggest a resolution to the paradox of algal blooms in oliogotrophic streams and rivers.

  5. Local geology determines responses of stream producers and fungal decomposers to nutrient enrichment: A field experiment.

    Science.gov (United States)

    Mykrä, Heikki; Sarremejane, Romain; Laamanen, Tiina; Karjalainen, Satu Maaria; Markkola, Annamari; Lehtinen, Sirkku; Lehosmaa, Kaisa; Muotka, Timo

    2018-04-16

    We examined how short-term (19 days) nutrient enrichment influences stream fungal and diatom communities, and rates of leaf decomposition and algal biomass accrual. We conducted a field experiment using slow-releasing nutrient pellets to increase nitrate (NO 3 -N) and phosphate (PO 4 -P) concentrations in a riffle section of six naturally acidic (naturally low pH due to catchment geology) and six circumneutral streams. Nutrient enrichment increased microbial decomposition rate on average by 14%, but the effect was significant only in naturally acidic streams. Nutrient enrichment also decreased richness and increased compositional variability of fungal communities in naturally acidic streams. Algal biomass increased in both stream types, but algal growth was overall very low. Diatom richness increased in response to nutrient addition by, but only in circumneutral streams. Our results suggest that primary producers and decomposers are differentially affected by nutrient enrichment and that their responses to excess nutrients are context dependent, with a potentially stronger response of detrital processes and fungal communities in naturally acidic streams than in less selective environments.

  6. Carbohydrate production by Amphora coffeaeformis, marine fouling diatom

    Digital Repository Service at National Institute of Oceanography (India)

    Bhosle, N.B.; Evans, L.; Edyvean, R.G.J.

    stream_size 11 stream_content_type text/plain stream_name biofouling_7_81.pdf.txt stream_source_info biofouling_7_81.pdf.txt Content-Encoding ISO-8859-1 Content-Type text/plain; charset=ISO-8859-1 ...

  7. Doping of magnetite nanoparticles facilitates clean harvesting of diatom oil as biofuel for sustainable energy

    Science.gov (United States)

    Kumar, Vikas; Singh, Ramesh; Thakur, Shipra; Ballabh Joshi, Khashti; Vinayak, Vandana

    2018-04-01

    Photosynthetic unicellular brown algae diatoms are considered as photobioreactors (PBRs) that synthesize and store oil in the form of lipid droplets and the much of the crude oil we use comes from fossil diatoms. The clean extraction of this crude oil from diatoms is difficult task. The construction of green chemical protocols for the clean separation of diatom oil from cells without killing or to harm the diatom cells is still in its primitive stage. In this report we would like to propose that facile doping of magnetite on diatoms can be used for clean oil separation in PBRs. We doped magnetite nanoparticles onto the surface of diatom Diadesmis confervaceae a diatom which oozes oil naturally. Doping magnetite onto diatoms can also facilitate easy separation of oil when cells are kept in an electromagnetic field. The cell wall of diatom besides having SiOH group has 281 amino acids of which 187–188 amino acids are conserved and are known for metal binding sites. The magnetite nanoparticles bind to the SiOH groups and metal binding sites of amino acids. The presence of appropriate amine functionalized linkers forming peptide aminosilane shells can further facilitate the binding of peptide/polypeptides which can be used in drug delivery. Besides this the magnetite doped diatoms have wide applications in removal of phosphates and chromium from waste water too.

  8. Evaluating effects of potential changes in streamflow regime on fish and aquatic-invertebrate assemblages in the New Jersey Pinelands

    Science.gov (United States)

    Kennen, Jonathan G.; Riskin, Melissa L.

    2010-01-01

    Changes in water demand associated with population growth and changes in land-use practices in the Pinelands region of southern New Jersey will have a direct effect on stream hydrology. The most pronounced and measurable hydrologic effect is likely to be flow reductions associated with increasing water extraction. Because water-supply needs will continue to grow along with population in the Pinelands area, the goal of maintaining a sustainable balance between the availability of water to protect existing aquatic assemblages while conserving the surficial aquifer for long-term support of human water use needs to be addressed. Although many aquatic fauna have shown resilience and resistance to short-term changes in flows associated with water withdrawals, sustained effects associated with ongoing water-development processes are not well understood. In this study, the U.S. Geological Survey sampled forty-three 100-meter-long stream reaches during high- and low-flow periods across a designed hydrologic gradient ranging from small- (4.1 square kilometers (1.6 square miles)) to medium- (66.3 square kilometers (25.6 square miles)) sized Pinelands stream basins. This design, which uses basin size as a surrogate for water availability, provided an opportunity to evaluate the possible effects of potential variation in stream hydrology on fish and aquatic-invertebrate assemblage response in New Jersey Pinelands streams where future water extraction is expected based on known build-out scenarios. Multiple-regression models derived from extracted non-metric multidimensional scaling axis scores of fish and aquatic invertebrates indicate that some variability in aquatic-assemblage composition across the hydrologic gradient is associated with anthropogenic disturbance, such as urbanization, changes in stream chemistry, and concomitant changes in high-flow runoff patterns. To account for such underlying effects in the study models, any flow parameter or assemblage attribute that

  9. Toxicity of dissolved and precipitated aluminium to marine diatoms.

    Science.gov (United States)

    Gillmore, Megan L; Golding, Lisa A; Angel, Brad M; Adams, Merrin S; Jolley, Dianne F

    2016-05-01

    Localised aluminium contamination can lead to high concentrations in coastal waters, which have the potential for adverse effects on aquatic organisms. This research investigated the toxicity of 72-h exposures of aluminium to three marine diatoms (Ceratoneis closterium (formerly Nitzschia closterium), Minutocellus polymorphus and Phaeodactylum tricornutum) by measuring population growth rate inhibition and cell membrane damage (SYTOX Green) as endpoints. Toxicity was correlated to the time-averaged concentrations of different aluminium size-fractions, operationally defined as aluminium exposure varied between diatom species. C. closterium was the most sensitive species (10% inhibition of growth rate (72-h IC10) of 80 (55-100)μg Al/L (95% confidence limits)) while M. polymorphus (540 (460-600)μg Al/L) and P. tricornutum (2100 (2000-2200)μg Al/L) were less sensitive (based on measured total aluminium). Dissolved aluminium was the primary contributor to toxicity in C. closterium, while a combination of dissolved and precipitated aluminium forms contributed to toxicity in M. polymorphus. In contrast, aluminium toxicity to the most tolerant diatom P. tricornutum was due predominantly to precipitated aluminium. Preliminary investigations revealed the sensitivity of C. closterium and M. polymorphus to aluminium was influenced by initial cell density with aluminium toxicity significantly (paluminium toxicity to diatoms do not involve compromising the plasma membrane. These results indicate that marine diatoms have a broad range in sensitivity to aluminium with toxic mechanisms related to both dissolved and precipitated aluminium. Copyright © 2016 Elsevier B.V. All rights reserved.

  10. Benthic macroinvertebrate assemblages in mangroves and open ...

    African Journals Online (AJOL)

    Benthic macroinvertebrate assemblages in mangroves and open intertidal areas on the Dar es Salaam coast, Tanzania. ... it is recommended that conservation efforts along the Tanzanian coast should focus here. Keywords: benthic macrofauna, community structure, littoral zone, Tanganyika, Western Indian Ocean ...

  11. Benthic assemblages of mega epifauna on the Oregon continental margin

    Science.gov (United States)

    Hemery, Lenaïg G.; Henkel, Sarah K.; Cochrane, Guy R.

    2018-01-01

    Environmental assessment studies are usually required by a country's administration before issuing permits for any industrial activities. One of the goals of such environmental assessment studies is to highlight species assemblages and habitat composition that could make the targeted area unique. A section of the Oregon continental slope that had not been previously explored was targeted for the deployment of floating wind turbines. We carried out an underwater video survey, using a towed camera sled, to describe its benthic assemblages. Organisms were identified to the lowest taxonomic level possible and assemblages described related to the nature of the seafloor and the depth. We highlighted six invertebrate assemblages and three fish assemblages. For the invertebrates within flat soft sediments areas we defined three different assemblages based on primarily depth: a broad mid-depth (98–315 m) assemblage dominated by red octopus, sea pens and pink shrimps; a narrower mid-depth (250–270 m) assemblage dominated by box crabs and various other invertebrates; and a deeper (310–600 m) assemblage dominated by sea urchins, sea anemones, various snails and zoroasterid sea stars. The invertebrates on mixed sediments also were divided into three different assemblages: a shallow (~100 m deep) assemblage dominated by plumose sea anemones, broad mid-depth (170–370 m) assemblage dominated by sea cucumbers and various other invertebrates; and, again, a narrower mid-depth (230–270 m) assemblage, dominated by crinoids and encrusting invertebrates. For the fish, we identified a rockfish assemblage on coarse mixed sediments at 170–370 m and another fish assemblage on smaller mixed sediments within that depth range (250–370 m) dominated by thornyheads, poachers and flatfishes; and we identified a wide depth-range (98–600 m) fish assemblage on flat soft sediments dominated by flatfishes, eelpouts and thornyheads. Three of these assemblages (the two

  12. Benthic assemblages of mega epifauna on the Oregon continental margin

    Science.gov (United States)

    Hemery, Lenaïg G.; Henkel, Sarah K.; Cochrane, Guy R.

    2018-05-01

    Environmental assessment studies are usually required by a country's administration before issuing permits for any industrial activities. One of the goals of such environmental assessment studies is to highlight species assemblages and habitat composition that could make the targeted area unique. A section of the Oregon continental slope that had not been previously explored was targeted for the deployment of floating wind turbines. We carried out an underwater video survey, using a towed camera sled, to describe its benthic assemblages. Organisms were identified to the lowest taxonomic level possible and assemblages described related to the nature of the seafloor and the depth. We highlighted six invertebrate assemblages and three fish assemblages. For the invertebrates within flat soft sediments areas we defined three different assemblages based on primarily depth: a broad mid-depth (98-315 m) assemblage dominated by red octopus, sea pens and pink shrimps; a narrower mid-depth (250-270 m) assemblage dominated by box crabs and various other invertebrates; and a deeper (310-600 m) assemblage dominated by sea urchins, sea anemones, various snails and zoroasterid sea stars. The invertebrates on mixed sediments also were divided into three different assemblages: a shallow ( 100 m deep) assemblage dominated by plumose sea anemones, broad mid-depth (170-370 m) assemblage dominated by sea cucumbers and various other invertebrates; and, again, a narrower mid-depth (230-270 m) assemblage, dominated by crinoids and encrusting invertebrates. For the fish, we identified a rockfish assemblage on coarse mixed sediments at 170-370 m and another fish assemblage on smaller mixed sediments within that depth range (250-370 m) dominated by thornyheads, poachers and flatfishes; and we identified a wide depth-range (98-600 m) fish assemblage on flat soft sediments dominated by flatfishes, eelpouts and thornyheads. Three of these assemblages (the two broad fish assemblages and the deep

  13. Mangrove macrobenthos: Assemblages, services, and linkages

    Science.gov (United States)

    Lee, S. Y.

    2008-02-01

    Macrobenthic assemblages are relatively poorly known compared to other components of the mangrove ecosystem. Tropical mangroves support macrobenthic biodiversity resources yet to be properly documented and interpreted. Some methodological challenges, such as the generally high spatial heterogeneity and complexity of the habitat, evidently reduce sampling efficiency and accuracy, while also leaving some microhabitats under-sampled. Macrobenthic assemblage structure seems to be influenced by local environmental conditions, such as hydroperiod, organic matter availability and sediment characteristics. Brachyurans, gastropods and oligochaetes dominate in the sediment, with the former two groups also common on hard surfaces provided by tree trunks, while insects and arachnids inhabit the canopy. Traditionally, studies of mangrove macrobenthos have focused on assemblage structure or the biology of individual species, but more complex inter-specific interactions and the inter-relationship between habitat and the biota are recently being addressed. Brachyuran crabs are the best-studied macrobenthos group, but many issues about their role in mangrove ecosystem dynamics are still controversial. Despite many species of mangrove macrobenthos being referred to as 'trophic dead ends', most serve as important links between recalcitrant mangrove organic matter and estuarine secondary production, through feeding excursion by mobile nekton during the high tide, and macrobenthos-mediated processing and exportation of organic matter. A significant difference in the standing crop biomass of forests between the Indo-west-Pacific (IWP)' and Atlantic-east-Pacific (AEP) mangroves may be related to the difference in species richness of mangrove as well as macrobenthos diversity in the two bioregions. Such differences in assemblage structure may also result in different ecosystem functioning, but the nature of the links is, however, yet to be explored. There is also a strong need for

  14. Stream periphyton responses to mesocosm treatments of ...

    Science.gov (United States)

    A stream mesocosm experiment was designed to compare biotic responses among streams exposed to an equal excess specific conductivity target of 850 µS/cm relative to a control that was set for 200 µS/cm and three treatments comprised of different major ion contents. Each treatment and the control was replicated 4 times at the mesocosm scale (16 mesocosms total). The treatments were based on dosing the background mesocosm water, a continuous flow-through mixture of natural river water and reverse osmosis treated water, with stock salt solutions prepared from 1) a mixture of sodium chloride and calcium chloride (Na/Cl chloride), 2) sodium bicarbonate, and 3) magnesium sulfate. The realized average specific conductance over the first 28d of continuous dosing was 827, 829, and 847 µS/cm, for the chloride, bicarbonate, and sulfate based treatments, respectively, and did not differ significantly. The controls averaged 183 µS/cm. Here we focus on comparing stream periphyton communities across treatments based on measurements obtained from a Pulse-Amplitude Modulated (PAM) fluorometer. The fluorometer is used in situ and with built in algorithms distributes the total aerial algal biomass (µg/cm2) of the periphyton among cyanobacteria, diatoms, and green algae. A measurement is recorded in a matter of seconds and, therefore, many different locations can be measured with in each mesocosm at a high return frequency. Eight locations within each of the 1 m2 (0.3 m W x 3

  15. Relative performance of three stream bed stability indices as indicators of stream health.

    Science.gov (United States)

    Kusnierz, Paul C; Holbrook, Christopher M

    2017-10-16

    Bed stability is an important stream habitat attribute because it affects geomorphology and biotic communities. Natural resource managers desire indices of bed stability that can be used under a wide range of geomorphic conditions, are biologically meaningful, and are easily incorporated into sampling protocols. To eliminate potential bias due to presence of instream wood and increase precision of stability values, we modified a stream bed instability index (ISI) to include measurements of bankfull depth (d bf ) and median particle diameter (D 50 ) only in riffles and increased the pebble count to decrease variability (i.e., increase precision) in D 50 . The new riffle-based instability index (RISI) was compared to two established indices: ISI and the riffle stability index (RSI). RISI and ISI were strongly associated with each other but neither was closely associated with RSI. RISI and ISI were closely associated with both a diatom- and two macrovertebrate-based stream health indices, but RSI was only weakly associated with the macroinvertebrate indices. Unexpectedly, precision of D 50 did not differ between RISI and ISI. Results suggest that RISI is a viable alternative to both ISI and RSI for evaluating bed stability in multiple stream types. With few data requirements and a simple protocol, RISI may also better conform to riffle-based sampling methods used by some water quality practitioners.

  16. Phytoplankton and the Macondo oil spill: A comparison of the 2010 phytoplankton assemblage to baseline conditions on the Louisiana shelf.

    Science.gov (United States)

    Parsons, M L; Morrison, W; Rabalais, N N; Turner, R E; Tyre, K N

    2015-12-01

    The Macondo oil spill was likely the largest oil spill to ever occur in United States territorial waters. We report herein our findings comparing the available baseline phytoplankton data from coastal waters west of the Mississippi River, and samples collected monthly from the same sampling stations, during and after the oil spill (May-October, 2010). Our results indicate that overall, the phytoplankton abundance was 85% lower in 2010 versus the baseline, and that the species composition of the phytoplankton community moved towards diatoms and cyanobacteria and away from ciliates and phytoflagellates. The results of this study reaffirm the view that phytoplankton responses will vary by the seasonal timing of the oil spill and the specific composition of the spilled oil. The trophic impacts of the purported lower abundance of phytoplankton in 2010 coupled with the observed assemblage shift remain unknown. Copyright © 2015 Elsevier Ltd. All rights reserved.

  17. Deforestation and stream warming affect body size of Amazonian fishes.

    Science.gov (United States)

    Ilha, Paulo; Schiesari, Luis; Yanagawa, Fernando I; Jankowski, KathiJo; Navas, Carlos A

    2018-01-01

    Declining body size has been suggested to be a universal response of organisms to rising temperatures, manifesting at all levels of organization and in a broad range of taxa. However, no study to date evaluated whether deforestation-driven warming could trigger a similar response. We studied changes in fish body size, from individuals to assemblages, in streams in Southeastern Amazonia. We first conducted sampling surveys to validate the assumption that deforestation promoted stream warming, and to test the hypothesis that warmer deforested streams had reduced fish body sizes relative to cooler forest streams. As predicted, deforested streams were up to 6 °C warmer and had fish 36% smaller than forest streams on average. This body size reduction could be largely explained by the responses of the four most common species, which were 43-55% smaller in deforested streams. We then conducted a laboratory experiment to test the hypothesis that stream warming as measured in the field was sufficient to cause a growth reduction in the dominant fish species in the region. Fish reared at forest stream temperatures gained mass, whereas those reared at deforested stream temperatures lost mass. Our results suggest that deforestation-driven stream warming is likely to be a relevant factor promoting observed body size reductions, although other changes in stream conditions, like reductions in organic matter inputs, can also be important. A broad scale reduction in fish body size due to warming may be occurring in streams throughout the Amazonian Arc of Deforestation, with potential implications for the conservation of Amazonian fish biodiversity and food supply for people around the Basin.

  18. Deforestation and stream warming affect body size of Amazonian fishes

    Science.gov (United States)

    Yanagawa, Fernando I.; Jankowski, KathiJo; Navas, Carlos A.

    2018-01-01

    Declining body size has been suggested to be a universal response of organisms to rising temperatures, manifesting at all levels of organization and in a broad range of taxa. However, no study to date evaluated whether deforestation-driven warming could trigger a similar response. We studied changes in fish body size, from individuals to assemblages, in streams in Southeastern Amazonia. We first conducted sampling surveys to validate the assumption that deforestation promoted stream warming, and to test the hypothesis that warmer deforested streams had reduced fish body sizes relative to cooler forest streams. As predicted, deforested streams were up to 6 °C warmer and had fish 36% smaller than forest streams on average. This body size reduction could be largely explained by the responses of the four most common species, which were 43–55% smaller in deforested streams. We then conducted a laboratory experiment to test the hypothesis that stream warming as measured in the field was sufficient to cause a growth reduction in the dominant fish species in the region. Fish reared at forest stream temperatures gained mass, whereas those reared at deforested stream temperatures lost mass. Our results suggest that deforestation-driven stream warming is likely to be a relevant factor promoting observed body size reductions, although other changes in stream conditions, like reductions in organic matter inputs, can also be important. A broad scale reduction in fish body size due to warming may be occurring in streams throughout the Amazonian Arc of Deforestation, with potential implications for the conservation of Amazonian fish biodiversity and food supply for people around the Basin. PMID:29718960

  19. Kinetic control on Zn isotope signatures recorded in marine diatoms

    Science.gov (United States)

    Köbberich, Michael; Vance, Derek

    2017-08-01

    Marine diatoms dominate the oceanic cycle of the essential micronutrient zinc (Zn). The stable isotopes of zinc and other metals are increasingly used to understand trace metal micronutrient cycling in the oceans. One clear feature of the early isotope data is the heavy Zn isotope signature of the average oceanic dissolved pool relative to the inputs, potentially driven by uptake of light isotopes into phytoplankton cells and export to sediments. However, despite the fact that diatoms strip Zn from surface waters across the Antarctic polar front in the Southern Ocean, the local upper ocean is not isotopically heavy. Here we use culturing experiments to quantify the extent of Zn isotope fractionation by diatoms and to elucidate the mechanisms driving it. We have cultured two different open-ocean diatom species (T. oceanica and Chaetoceros sp.) in a series of experiments at constant medium Zn concentration but at bioavailable medium Fe ranging from limiting to replete. We find that T. oceanica can maintain high growth rates and Zn uptake rates over the full range of bioavailable iron (Fe) investigated, and that the Zn taken up has a δ66Zn that is unfractionated relative to that of the bioavailable free Zn in the medium. The studied representative of the genus Chaetoceros, on the other hand, shows more significantly reduced Zn uptake rates at low Fe and records more variable biomass δ66Zn signatures, of up to 0.85‰ heavier than the medium. We interpret the preferential uptake of heavy isotopes at extremely low Zn uptake rates as potentially due to either of the following two mechanisms. First, the release of extracellular polymeric substances (EPS), at low Fe levels, may preferentially scavenge heavy Zn isotopes. Second, the Zn uptake rate may be slow enough to establish pseudo-equilibrium conditions at the transporter site, with heavy Zn isotopes forming more stable surface complexes. Thus we find that, in our experiments, Fe-limitation exerts a key control that

  20. Seasonal changes in nutrients, chlorophyll a and the phytoplankton assemblage of the western subarctic gyre in the Pacific Ocean

    Science.gov (United States)

    Mochizuki, Mamiko; Shiga, Naonobu; Saito, Masaru; Imai, Keiri; Nojiri, Yukihiro

    The standing stock and species composition of phytoplankton (>10 μm) were studied using monthly water samples collected at Stn KNOT (Kyodo North Pacific Ocean Time Series; 44°N, 155°E) in the western subarctic gyre in the Pacific Ocean through June 1998 to June 1999 (except for January-April 1999) and January-February 2000. One-liter water samples were preserved in 1% neutrally buffered formalin. Identification and enumeration of phytoplankton were made with an inverted microscope. Nutrients did not appear to be depleted for phytoplakton growth during any season. The vertical distribution of phytoplankton was primarily restricted by the pycnocline, and the bulk of phytoplankton assemblage existed within the surface mixed layer. In July, however, some senescent cells were observed at 200 m. Phytoplankton abundance clearly showed a spring maximum (i.e. spring bloom) in May. The seasonal change in cell numbers, however, did not coincide closely with the change in chlorophyll a concentration. Centric diatoms, which were composed of Thalassiosira, Chaetoceros, and Coscinodiscus, dominated all year round, and showed temporal succession. Pennate diatoms (mostly Neodenticula seminae and Fragilariopsis) increased only during the spring bloom. Dinoflagellates (mostly Gymnodinium and Prorocentrum) were low in abundance, although they increased in summer when the phytoplankton standing stock was low. Silicoflagellate abundance was extremely low. Comparing the annual species composition of phytoplankton between Stn KNOT and Stn P (50°N, 145°W) in the Alaskan Gyre, there was a remarkable difference between the two sites. The phytoplankton assemblage at Stn P is characterized by a high abundance of Rhizosolenia alata and low abundance of Thalassiosira. In contrast, Thalassiosira dominates at Stn KNOT during most seasons.

  1. A conceptual model for the growth, persistence, and blooming behavior of the benthic mat-forming diatom Didymosphenia geminata (Invited)

    Science.gov (United States)

    Cullis, J. D.; Gillis, C.; Bothwell, M.; Kilroy, C.; Packman, A. I.; Hassan, M. A.

    2010-12-01

    The nuisance diatom Didymosphenia geminata (didymo) presents an ecological paradox. How can this benthic algae produce such large amounts of biomass in cold, fast flowing, low nutrient streams? The aim of this paper is to present a conceptual model for the growth, persistence, and blooming behavior of this benthic mat-forming diatom that may help to explain this paradox. The conceptual model highlights the importance of distinguishing between mat thickness and cell growth. It presents evidence gathered from a range of existing studies around the world to support the proposed relationship between growth and light, nutrients and temperature as well as the importance of flood events and bed disturbance in mat removal. It is anticipated that this conceptual model will not only help in identifying the key controlling variables and set a framework for future studies but also support the future management of this nuisance algae. Summary of the conceptual model for didymo growth showing the proposed relationships for the growth of cells and mats with nutrients, radiation and water temperature and the dependence of removal on bed shear stress and the potential for physical bed disturbance.

  2. Momentum autocorrelation function of a classic diatomic chain

    Energy Technology Data Exchange (ETDEWEB)

    Yu, Ming B., E-mail: mingbyu@gmail.com

    2016-10-23

    A classical harmonic diatomic chain is studied using the recurrence relations method. The momentum autocorrelation function results from contributions of acoustic and optical branches. By use of convolution theorem, analytical expressions for the acoustic and optical contributions are derived as even-order Bessel function expansions with coefficients given in terms of integrals of elliptic functions in real axis and a contour parallel to the imaginary axis, respectively. - Highlights: • Momentum autocorrelation function of a classic diatomic chain is studied. • It is derived as even-order Bessel function expansion using the convolution theorem. • The expansion coefficients are integrals of elliptic functions. • Addition theorem is used to reduce complex elliptic function to complex sum of real ones.

  3. Diatom. A potential bio-accumulator of gold

    International Nuclear Information System (INIS)

    Chakraborty, N.; Pal, R.; Ramaswami, A.; Nayak, D.; Lahiri, S.

    2006-01-01

    The bioaccumulation of gold in trace concentration by Nitzschia obtusa and Navicula minima, two members of bacillariophyceae, has been studied. It has been observed that Nitzschia obtusa showed better accumulation of gold in acidic pH in comparison to neutral and basic pH. Maximum accumulation was observed with 1 mg x kg -1 or less gold concentration. However, the accumulation by the living cells was reduced when the matrix concentration was higher. Navicula minima, on the other hand, found to be a better accumulator of gold in wide ranges of pH and substrate concentration of the media. It was also inferred that the gold accumulation by diatom was mainly due to adsorption by biosilica (siliceous frustules of dead diatom cells). Accumulated gold was recovered with conc. HNO 3 . (author)

  4. The endemic Patagonian vespertilionid assemblage is a depauperate ecomorphological vicariant of species-rich neotropical assemblages

    Institute of Scientific and Technical Information of China (English)

    Analía L.GIM(E)NEZ; Norberto P. GIANNINI

    2017-01-01

    Vespertilionidae is the most diverse chiropteran family,and its diversity is concentrated in warm regions of the World;however,due to physiological and behavioral adaptations,these bats also dominate bat faunas in temperate regions.Here we performed a comparative study of vespertilionid assemblages from two broad regions of the New World,the cold and harsh Patagonia,versus the remaining temperate-to-subtropical,extra-Patagonian eco-regions of the South American Southern Cone.We took an ecomorphological approach and analyzed the craniodental morphological structure of these assemblages within a phylogenetic framework.We measured 17 craniodental linear variables from 447 specimens of 22 currently recognized vespertilionid species of the study regions.We performed a multivariate analysis to define the morphofunctional space,and calculated the pattern and degree of species packing for each assemblage.We assessed the importance of phylogeny and biogeography,and their impact on depauperate (Patagonian) versus rich (extra-Patagonian) vespertilionid assemblages as determinants of morphospace structuring.We implemented a sensitivity analysis associated to small samples of rare species.The morphological patterns were determined chiefly by the evolutionary history of the family.The Patagonian assemblage can be described as a structurally similar but comparatively depauperate ecomorphological version of those assemblages from neighboring extra-Patagonian eco-regions.The Patagonian assemblage seems to have formed by successively adding populations from Northern regions that eventually speciated in the region,leaving corresponding sisters (vicariants) in extraPatagonian eco-regions that continued to be characteristically richer.Despite being structurally akin,degree of species packing in Patagonia was comparatively very low,which may reflect the effect of limited dispersal success into a harsh region for bat survival.

  5. Interface states in a class of heterojunctions between diatomic semiconductors

    International Nuclear Information System (INIS)

    Kandilarov, B.D.; Detcheva, V.

    1979-09-01

    The theory of interface state in heterojunctions between diatomic semiconductors is developed in the framework of the S-matrix approach and on the basis of a one-dimensional model. The condition for the existence of interface states is explicitly derived for undeformed and deformed herterojunctions. Numerical analysis is performed and several particular cases are discussed in order to clarify the general features of the problem. (author)

  6. Novel sex cells and evidence for sex pheromones in diatoms.

    Science.gov (United States)

    Sato, Shinya; Beakes, Gordon; Idei, Masahiko; Nagumo, Tamotsu; Mann, David G

    2011-01-01

    Diatoms belong to the stramenopiles, one of the largest groups of eukaryotes, which are primarily characterized by a presence of an anterior flagellum with tubular mastigonemes and usually a second, smooth flagellum. Based on cell wall morphology, diatoms have historically been divided into centrics and pennates, of which only the former have flagella and only on the sperm. Molecular phylogenies show the pennates to have evolved from among the centrics. However, the timing of flagellum loss--whether before the evolution of the pennate lineage or after--is unknown, because sexual reproduction has been so little studied in the 'araphid' basal pennate lineages, to which Pseudostaurosira belongs. Sexual reproduction of an araphid pennate, Pseudostaurosira trainorii, was studied with light microscopy (including time lapse observations and immunofluorescence staining observed under confocal scanning laser microscopy) and SEM. We show that the species produces motile male gametes. Motility is mostly associated with the extrusion and retrieval of microtubule-based 'threads', which are structures hitherto unknown in stramenopiles, their number varying from one to three per cell. We also report experimental evidence for sex pheromones that reciprocally stimulate sexualization of compatible clones and orientate motility of the male gametes after an initial 'random walk'. The threads superficially resemble flagella, in that both are produced by male gametes and contain microtubules. However, one striking difference is that threads cannot beat or undulate and have no motility of their own, and they do not bear mastigonemes. Threads are sticky and catch and draw objects, including eggs. The motility conferred by the threads is probably crucial for sexual reproduction of P. trainorii, because this diatom is non-motile in its vegetative stage but obligately outbreeding. Our pheromone experiments are the first studies in which gametogenesis has been induced in diatoms by cell

  7. Bacterial colonization of the freshwater planktonic diatom Fragilaria crotonensis

    Czech Academy of Sciences Publication Activity Database

    Znachor, Petr; Šimek, Karel; Nedoma, Jiří

    2012-01-01

    Roč. 66, č. 1 (2012), s. 87-94 ISSN 0948-3055 R&D Projects: GA ČR(CZ) GA206/08/0015; GA ČR(CZ) GAP504/11/2177; GA ČR(CZ) GAP504/11/2182 Institutional research plan: CEZ:AV0Z60170517 Keywords : PDMPO * bacterial colonization * diatoms * Fragilaria crotonensis * flood * reservoir Subject RIV: DA - Hydrology ; Limnology Impact factor: 2.037, year: 2012

  8. Novel sex cells and evidence for sex pheromones in diatoms.

    Directory of Open Access Journals (Sweden)

    Shinya Sato

    Full Text Available BACKGROUND: Diatoms belong to the stramenopiles, one of the largest groups of eukaryotes, which are primarily characterized by a presence of an anterior flagellum with tubular mastigonemes and usually a second, smooth flagellum. Based on cell wall morphology, diatoms have historically been divided into centrics and pennates, of which only the former have flagella and only on the sperm. Molecular phylogenies show the pennates to have evolved from among the centrics. However, the timing of flagellum loss--whether before the evolution of the pennate lineage or after--is unknown, because sexual reproduction has been so little studied in the 'araphid' basal pennate lineages, to which Pseudostaurosira belongs. METHODS/PRINCIPAL FINDING: Sexual reproduction of an araphid pennate, Pseudostaurosira trainorii, was studied with light microscopy (including time lapse observations and immunofluorescence staining observed under confocal scanning laser microscopy and SEM. We show that the species produces motile male gametes. Motility is mostly associated with the extrusion and retrieval of microtubule-based 'threads', which are structures hitherto unknown in stramenopiles, their number varying from one to three per cell. We also report experimental evidence for sex pheromones that reciprocally stimulate sexualization of compatible clones and orientate motility of the male gametes after an initial 'random walk'. CONCLUSIONS/SIGNIFICANCE: The threads superficially resemble flagella, in that both are produced by male gametes and contain microtubules. However, one striking difference is that threads cannot beat or undulate and have no motility of their own, and they do not bear mastigonemes. Threads are sticky and catch and draw objects, including eggs. The motility conferred by the threads is probably crucial for sexual reproduction of P. trainorii, because this diatom is non-motile in its vegetative stage but obligately outbreeding. Our pheromone experiments

  9. Interactions of bacteria with diatoms: Influence on natural marine biofilms.

    Digital Repository Service at National Institute of Oceanography (India)

    Khandeparker, L.; DeCosta, P.M.; Anil, A.C.; Sawant, S.S.

    therein). In fact, biofilms are considered a reservoir and source of dissemination for V. cholerae (Shikuma & Hadfield 2010). Nutrient concentrations in the surrounding waters also affect the progression of the biofilm community (Qian et al. 2007... to render diatom monocultures near axenic (Patil & Anil 2005c). The following diluents were used – Aged Sea Water (ASW; unenriched control), ASW+streptomycin (ASW+S), ASW+chloramphenicol (ASW+C), f/2 medium (Guillard and Ryther, 1962) prepared in ASW [f...

  10. Recombinational laser employing electron transitions of diatomic molecules

    Energy Technology Data Exchange (ETDEWEB)

    Biriukov, A S; Prokhorov, A M; Shelepin, L A; Shirokov, N N

    1974-12-01

    Conditions are established for obtaining laser action in the visible and uv regions of the spectrum, using transitions between electronic states of diatomic molecules during recombination of a dissociated gas. The mechanism of population inversion was studied for the oxygen molecule, and gain estimates were obtained for laser action at a wavelength of 4881 A. The feasibility of laser action at other wavelengths was examined.

  11. Single ionization of diatomic molecules by bare ion impact

    International Nuclear Information System (INIS)

    Purkait, M; Mandal, C R

    2014-01-01

    The molecular three-Coulomb wave model (M3CW) has been extensively used to study the double-differential ionization cross sections (DDCS) of diatomic molecules by the impact of bare ions at intermediate and high energies. In this model, the distortion of the initial channel by the incoming projectile is also included. The present DDCS results are found to be in good accord both with the experiment of Baran et al 2008 as well as with other theory

  12. Consumer–brand assemblages in advertising

    DEFF Research Database (Denmark)

    Bjerrisgaard, Sofie Møller; Kjeldgaard, Dannie; Bengtson, Anders

    2013-01-01

    This paper discusses how the use of tattoos in advertising renders diverse brand–consumer assemblages visible. In considering advertising practitioners as professionals of entanglement, the paper emphasizes the embeddedness of practitioners’ use of tattoo symbolism in institutionalized marketing...... systems and in the cultural history of tattooing. In accordance with recent emphasis on the importance of material devices for understanding contemporary sociality, this paper presents a semiotic analysis of a convenience sample of advertisements depicting tattoos. Tattoos are productive for the study...... potency. This analysis demonstrates how the emergence of brand tattoos in advertising challenges the dominant consumer centrism in consumer research and suggests a networked, emerging understanding of the subject in which agency is distributed in socio-technical assemblages....

  13. Radiation damage in diatomic materials at high doses

    International Nuclear Information System (INIS)

    Hobbs, L.W.; Hughes, A.E.

    1975-10-01

    Radiation effects in diatomic materials can differ structurally from those in metals because of the need to take into account different displacement rates on the two sublattices and the inevitable stoichiometric implications; in most diatomic insulators the anion species has the greater displacement cross section. Anion point defect stabilisation in heavily-irradiated (0.1 to 10 dpa) diatomic insulators has been studied using radiolysis of alkali and alkaline earth halides. A temperatures > 0.3 Tsub(m), all anion defects are mobile and can aggregate. Aggregation of anion interstitials results in creation of perfect dislocation loops without the need for primary cation displacements; simultaneous formation of substitutional anion molecular centres provides the necessary cation interstitials. Aggregation of anion vacancies leads to formation of metallic inclusions of the cation species, in some cases in an ordered array, which is the analogue, on a single sublattice, to the void lattice in metals. Availability of sinks for both anion interstitials and anion vacancies yields defect growth kinetics similar to those observed during formation of voids in irradiated metals, and a very high level of damage (approximately 10%) can be sustained in the lattice. The width of the temperature region concerned is much narrower, however, due to the possibility of recombination of aggregated or re-emitted anion vacancies with mobile or dispersed anion molecular defects; the latter can also aggregate to form fluid anion molecular inclusions and so complete the decomposition of the solid into separate phases of its constituent elements. (author)

  14. A Rapid Method for the Determination of Fucoxanthin in Diatom

    Directory of Open Access Journals (Sweden)

    Li-Juan Wang

    2018-01-01

    Full Text Available Fucoxanthin is a natural pigment found in microalgae, especially diatoms and Chrysophyta. Recently, it has been shown to have anti-inflammatory, anti-tumor, and anti-obesityactivity in humans. Phaeodactylum tricornutum is a diatom with high economic potential due to its high content of fucoxanthin and eicosapentaenoic acid. In order to improve fucoxanthin production, physical and chemical mutagenesis could be applied to generate mutants. An accurate and rapid method to assess the fucoxanthin content is a prerequisite for a high-throughput screen of mutants. In this work, the content of fucoxanthin in P. tricornutum was determined using spectrophotometry instead of high performance liquid chromatography (HPLC. This spectrophotometric method is easier and faster than liquid chromatography and the standard error was less than 5% when compared to the HPLC results. Also, this method can be applied to other diatoms, with standard errors of 3–14.6%. It provides a high throughput screening method for microalgae strains producing fucoxanthin.

  15. Models of the delayed nonlinear Raman response in diatomic gases

    International Nuclear Information System (INIS)

    Palastro, J. P.; Antonsen, T. M. Jr.; Pearson, A.

    2011-01-01

    We examine the delayed response of a diatomic gas to a polarizing laser field with the goal of obtaining computationally efficient methods for use with laser pulse propagation simulations. We demonstrate that for broadband pulses, heavy molecules such as O 2 and N 2 , and typical atmospheric temperatures, the initial delayed response requires only classical physics. The linear kinetic Green's function is derived from the Boltzmann equation and shown to be in excellent agreement with full density-matrix calculations. A straightforward perturbation approach for the fully nonlinear, kinetic impulse response is also presented. With the kinetic theory a reduced fluid model of the diatomic gas' orientation is derived. Transport coefficients are introduced to model the kinetic phase mixing of the delayed response. In addition to computational rapidity, the fluid model provides intuition through the use of familiar macroscopic quantities. Both the kinetic and the fluid descriptions predict a nonlinear steady-state alignment after passage of the laser pulse, which in the fluid model is interpreted as an anisotropic temperature of the diatomic fluid with respect to motion about the polarization axis.

  16. Nature engineered diatom biosilica as drug delivery systems.

    Science.gov (United States)

    Uthappa, U T; Brahmkhatri, Varsha; Sriram, G; Jung, Ho-Young; Yu, Jingxian; Kurkuri, Nikita; Aminabhavi, Tejraj M; Altalhi, Tariq; Neelgund, Gururaj M; Kurkuri, Mahaveer D

    2018-05-14

    Diatoms, unicellular photosynthetic algae covered with siliceous cell wall, are also called frustule. These are the most potential naturally available materials for the development of cost-effective drug delivery systems because of their excellent biocompatibility, high surface area, low cost and ease of surface modification. Mesoporous silica materials such as MCM-41 and SBA-15 have been extensively used in drug delivery area. Their synthesis is challenging, time consuming, requires toxic chemicals and are energy intensive, making the entire process expensive and non-viable. Therefore, it is necessary to explore alternative materials. Surprisingly, nature has provided some exciting materials called diatoms; biosilica is one such a material that can be potentially used as a drug delivery vehicle. The present review focuses on different types of diatom species used in drug delivery with respect to their structural properties, morphology, purification process and surface functionalization. In this review, recent advances along with their limitations as well as the future scope to develop them as potential drug delivery vehicles are discussed. Copyright © 2018. Published by Elsevier B.V.

  17. A simple digestion method with a Lefort aqua regia solution for diatom extraction.

    Science.gov (United States)

    Wang, Huipin; Liu, Yan; Zhao, Jian; Hu, Sunlin; Wang, Yuzhong; Liu, Chao; Zhang, Yanji

    2015-01-01

    Presence of diatoms in tissues has been considered as a significant sign of drowning. However, there are limitations in the present extraction methods. We developed a new digestion method using the Lefort aqua regia solution (3:1 nitric acid to hydrochloric acid) for diatom extraction and evaluated the digestive capability, diatom destruction, and diatoms' recovery of this new method. The kidney tissues from rabbit mixed with water rich in diatoms were treated by the Lefort aqua regia digestion method (n = 10) and the conventional acid digestion method (n = 10). The results showed that the digestive capability of Lefort aqua regia digestion method was superior to conventional acid digestion method (p 0.05). The Lefort aqua regia reagent is an improvement over the conventional acid digestion for recovery of diatoms from tissue samples. © 2014 American Academy of Forensic Sciences.

  18. Multivariate and Spatial Visualisation of Archaeological Assemblages

    Directory of Open Access Journals (Sweden)

    Martin Sterry

    2018-05-01

    Full Text Available Multivariate analyses, in particular correspondence analysis (CA, have become a standard exploratory tool for analysing and interpreting variance in archaeological assemblages. While they have greatly helped analysts, they unfortunately remain abstract to the viewer, all the more so if the viewer has little or no experience with multivariate statistics. A second issue with these analyses can arise from the detachment of archaeological material from its geo-referenced location and typically considered only in terms of arbitrary classifications (e.g. North Europe, Central Europe, South Europe instead of the full range of local conditions (e.g. proximity to other assemblages, relationships with other spatial phenomena. This article addresses these issues by presenting a novel method for spatially visualising CA so that these analyses can be interpreted intuitively. The method works by transforming the resultant bi-plots of the CA into colour maps using the HSV colour model, in which the similarity and difference between assemblages directly corresponds to the similarity and difference of the colours used to display them. Utilising two datasets – ceramics from the excavations of the Roman fortress of Vetera I, and terra sigillata forms collected as part of 'The Samian Project' – the article demonstrates how the method is applied and how it can be used to draw out spatial and temporal trends.

  19. Assemblaged by desire: Potterheads’ productive consumption

    Directory of Open Access Journals (Sweden)

    André Luiz Maranhão de Souza Leão

    2018-02-01

    Full Text Available The Harry Potter saga became one of the cultural products with a major impact on the twenty-first century. Its fans, called potterheads, relate in a social space known as fandom. Their practices are based on the appropriation of the cultural text in a productive consumption process within a context of participatory culture. Assuming desire from the perspective of Deleuzian assemblage theory, which presents this concept as a flow of productive energy that is articulated through a collective force, this study aimed to understand how potterheads’ productive consumption is assemblaged by desire. We therefore explored multifocal data concerning practices of potterheads available on digital platforms using Foucauldian Discourse Analysis. Our results revealed that potterheads’ desire assemblage maintains their bond with the canonical universe of the saga, as a way of maintaining identity and security in the transition to adult life, through relationships in the fandom and in pursuit of broader social legitimacy. The study contributes theoretically by adopting the Deleuzian notion of desire as a lens to understand the collective action of consumers in cultural contexts of practice.

  20. Evidence for fish dispersal from spatial analysis of stream network topology

    Science.gov (United States)

    Hitt, N.P.; Angermeier, P.L.

    2008-01-01

    Developing spatially explicit conservation strategies for stream fishes requires an understanding of the spatial structure of dispersal within stream networks. We explored spatial patterns of stream fish dispersal by evaluating how the size and proximity of connected streams (i.e., stream network topology) explained variation in fish assemblage structure and how this relationship varied with local stream size. We used data from the US Environmental Protection Agency's Environmental Monitoring and Assessment Program in wadeable streams of the Mid-Atlantic Highlands region (n = 308 sites). We quantified stream network topology with a continuous analysis based on the rate of downstream flow accumulation from sites and with a discrete analysis based on the presence of mainstem river confluences (i.e., basin area >250 km2) within 20 fluvial km (fkm) from sites. Continuous variation in stream network topology was related to local species richness within a distance of ???10 fkm, suggesting an influence of fish dispersal within this spatial grain. This effect was explained largely by catostomid species, cyprinid species, and riverine species, but was not explained by zoogeographic regions, ecoregions, sampling period, or spatial autocorrelation. Sites near mainstem river confluences supported greater species richness and abundance of catostomid, cyprinid, and ictalurid fishes than did sites >20 fkm from such confluences. Assemblages at sites on the smallest streams were not related to stream network topology, consistent with the hypothesis that local stream size regulates the influence of regional dispersal. These results demonstrate that the size and proximity of connected streams influence the spatial distribution of fish and suggest that these influences can be incorporated into the designs of stream bioassessments and reserves to enhance management efficacy. ?? 2008 by The North American Benthological Society.

  1. Ephemeroptera, Plecoptera and Trichoptera assemblages in litter in a mountain stream of the Atlantic Rainforest from Southeastern Brazil Comunidades de Ephemeroptera, Plecoptera e Trichoptera em folhiço de um riacho de montanha da Mata Atlântica do Sudeste do Brasil

    Directory of Open Access Journals (Sweden)

    Vera L. Crisci-Bispo

    2007-01-01

    Full Text Available The study of Ephemeroptera, Plecoptera and Trichoptera associated with litter in southeastern Brazil streams aimed to answer the following questions: 1 Does richness and composition of EPT fauna differ between riffle and pool mesohabitats despite being associated to the same substratum, litter? 2 Does the similarity of the EPT fauna between both mesohabitats change with time? 3 Does the EPT functional feeding structure differ between both mesohabitats (riffles-pools? In order to answer these questions, monthly collections, from November 1999 to June 2000, were done in Ribeirão (Stream Bocaina with a D-net (10 litter patches in riffles and 10 in pools. The EPT fauna at Ribeirão Bocaina was more diversified and more abundant in the litter in riffles than in the litter in pools, although, when richness was standardized for the same number of individuals it became similar in both conditions. EPT fauna was very different between both mesohabitats in terms of faunal composition as well as in terms of function. Probably it was due to differences in water speed, in the time of litter residence and in the concentration of dissolved oxygen between both mesohabitats.A fauna de Ephemeroptera, Plecoptera e Trichoptera associadas ao folhiço em um riacho do sudeste do Brasil foi estudada com o objetivo de responder às seguintes questões: 1 A riqueza e a composição faunística de EPT difere entre os dois mesohabitats (corredeira-remanso mesmo quando associadas ao mesmo substrato, folhiço? 2 A similaridade da fauna de EPT entre os dois mesohabitas muda temporalmente? 3 A estrutura funcional de EPT difere entre os dois mesohabitats (corredeira-remanso? Para responder essas questões, coletas mensais, de novembro de 1999 a junho de 2000, foram feitas no Ribeirão Bocaina com rede D (10 acúmulos de folhas em remanso e 10 em corredeira. A fauna de EPT do Ribeirão Bocaina foi mais diversificada e mais abundante no folhiço em corredeira do que no folhi

  2. Spatial extent and dynamics of dam impacts on tropical island freshwater fish assemblages

    Science.gov (United States)

    Cooney, Patrick B.; Kwak, Thomas J.

    2013-01-01

    Habitat connectivity is vital to the persistence of migratory fishes. Native tropical island stream fish assemblages composed of diadromous species require intact corridors between ocean and riverine habitats. High dams block fish migration, but low-head artificial barriers are more widespread and are rarely assessed for impacts. Among all 46 drainages in Puerto Rico, we identified and surveyed 335 artificial barriers that hinder fish migration to 74.5% of the upstream habitat. We also surveyed occupancy of native diadromous fishes (Anguillidae, Eleotridae, Gobiidae, and Mugilidae) in 118 river reaches. Occupancy models demonstrated that barriers 2 meters (m) high restricted nongoby fish migration and extirpated those fish upstream of 4-m barriers. Gobies are adapted to climbing and are restricted by 12-m barriers and extirpated upstream of 32-m barriers. Our findings quantitatively illustrate the extensive impact of low-head structures on island stream fauna and provide guidance for natural resource management, habitat restoration, and water development strategies.

  3. A 900-Year Diatom and Chrysophyte Record of Spring Mixing and Summer Stratification From Varved Lake Mina, West-Central Minnesota, USA

    Science.gov (United States)

    St. Jacques, J.; Cumming, B. F.; Smol, J. P.

    2009-05-01

    A high-resolution, independent pollen-inferred paleoclimate record and direct algal seasonality data from the actual time of sediment deposition are used to interpret the high-resolution diatom and chrysophyte record of varved Lake Mina, west-central Minnesota, USA during AD 1116-2002. This direct algal seasonality information was obtained by a new technique of splitting varves into constituent winter-spring and summer lamina, and separately analyzing the siliceous algae in each layer. Analyses of integrated, continuous four-year diatom and chrysophyte samples from a sedimentary sequence show that the time period AD 1116-1478 (i.e. the Atlantic- centered Medieval Climate Anomaly (MCA)) was characterized by periods of vigorous and prolonged spring mixing, suggesting that ice-out occurred early. However, the warm summer temperatures in the MCA, particularly in a massive drought spanning AD 1300-1400, frequently caused the lake to stratify strongly, leading to nutrient depletion. During AD 1478-1870 (i.e. the Atlantic-centered Little Ice Age (LIA)), Lake Mina was characterized by weak spring circulation and increasing nutrient depletion, suggesting late ice-out conditions. Strong summer stratification and/or nutrient depletion in both time periods is shown by the occurrence of the nutrient-poor oligotrophic taxon Cyclotella pseudostelligera. The diatom and chrysophyte assemblages of the period of Euro-American settlement AD 1870-2002 show higher nutrient availability and increased spring mixing intensity, due to forest clearance and increasingly earlier ice-out (documented in regional historical records).

  4. Diatoms in acid mine drainage and their role in the formation of iron-rich stromatolites

    Energy Technology Data Exchange (ETDEWEB)

    Brake, S.S.; Hasiotis, S.T.; Dannelly, H.K. [Indiana State University, Terre Haute, IN (United States)

    2004-08-01

    Adverse conditions in the acid mine drainage (AMD) system at the Green Valley mine, Indiana, limit diatom diversity to one species, Nitzschia tubicola. It is present in three distinct microbial consortia: Euglena mutabilis-dominated biofilm, diatom-dominated biofilm, and diatom-exclusive biofilm. E. mutabilis dominates the most extensive biofilm, with lesser numbers of N. tubicola, other eukaryotes, and bacteria. Diatom-dominated biofilm occurs as isolated patches containing N. tubicola with minor fungal hyphae, filamentous algae, E. mutabilis, and bacteria. Diatom-exclusive biofilm is rare, composed entirely of N. tubicola. Diatom distribution is influenced by seasonal and intraseasonal changes in water temperature and chemistry. Diatoms are absent in winter due to cool water temperatures. In summer, isolated patchy communities are present due to warmer water temperatures. In 2001, the diatom community expanded its distribution following a major rainfall that temporarily diluted the effluent, creating hospitable conditions for diatom growth. After several weeks when effluent returned to preexisting conditions, the diatom biofilm retreated to isolated patches, and E. mutabilis biofilm flourished. Iron-rich stromatolites underlie the biofilms and consist of distinct laminae, recording spatial and temporal oscillations in physicochemical conditions and microbial activity. The stromatolites are composed of thin, wavy laminae with partially decayed E. mutabilis biofilm, representing microbial activity and iron precipitation under normal AMD conditions. Alternating with the wavy layers are thicker, porous, spongelike laminae composed of iron precipitated on and incorporated into radiating colonies of diatoms. These layers indicate episodic changes in water chemistry, allowing diatoms to temporarily dominate the system.

  5. Studies on fouling diatoms from the Zuari Estuary, Goa (west coast of India)

    Digital Repository Service at National Institute of Oceanography (India)

    Redekar, P.D.; Wagh, A.B.

    from offshore waters of Bombay High area using aluminium panels and recorded 58 species of fouling diatoms Of these Navicula Coscinodiscus Rhizosolenia and Chaetoceros were found to be common The dominance of Centrales over Pennales in water column... on fouling diatoms from the Zuari estuary, Goa (West coast of India) 119 Pangu (1993) used mild steel, aluminium, fiberglass and glass test panels and the immersion period of panels was long (1 month to 11 months) The fouling diatoms from Waghotana...

  6. Complex dynamics in diatomic molecules. Part II: Quantum trajectories

    International Nuclear Information System (INIS)

    Yang, C.-D.; Weng, H.-J.

    2008-01-01

    The second part of this paper deals with quantum trajectories in diatomic molecules, which has not been considered before in the literature. Morse potential serves as a more accurate function than a simple harmonic oscillator for illustrating a realistic picture about the vibration of diatomic molecules. However, if we determine molecular dynamics by integrating the classical force equations derived from a Morse potential, we will find that the resulting trajectories do not consist with the probabilistic prediction of quantum mechanics. On the other hand, the quantum trajectory determined by Bohmian mechanics [Bohm D. A suggested interpretation of the quantum theory in terms of hidden variable. Phys. Rev. 1952;85:166-179] leads to the conclusion that a diatomic molecule is motionless in all its vibrational eigen-states, which also contradicts probabilistic prediction of quantum mechanics. In this paper, we point out that the quantum trajectory of a diatomic molecule completely consistent with quantum mechanics does exist and can be solved from the quantum Hamilton equations of motion derived in Part I, which is based on a complex-space formulation of fractal spacetime [El Naschie MS. A review of E-Infinity theory and the mass spectrum of high energy particle physics. Chaos, Solitons and Fractals 2004;19:209-36; El Naschie MS. E-Infinity theory - some recent results and new interpretations. Chaos, Solitons and Fractals 2006;29:845-853; El Naschie MS. The concepts of E-infinity. An elementary introduction to the cantorian-fractal theory of quantum physics. Chaos, Solitons and Fractals 2004;22:495-511; El Naschie MS. SU(5) grand unification in a transfinite form. Chaos, Solitons and Fractals 2007;32:370-374; Nottale L. Fractal space-time and microphysics: towards a theory of scale relativity. Singapore: World Scientific; 1993; Ord G. Fractal space time and the statistical mechanics of random works. Chaos, Soiltons and Fractals 1996;7:821-843] approach to quantum

  7. Dust fluxes linked to intensification of Prevailing Westerlies and Trade Winds stimulated Ethmodiscus rex giant diatom blooms in the southern Mariana Trench, western tropical Pacific at onset of the Last Glacial Maximum

    Science.gov (United States)

    Chen, D.; Luo, M.; Algeo, T. J.; Chen, L.

    2017-12-01

    The strontium (Sr) and neodymium (Nd) isotope compositions and clay-mineral assemblages of the detrital fraction of sediments in the southern Mariana Trench together with major- and trace-elements concentrations of bulk sediments have been determined to trace the sediment provenance and investigate the relationship between Asian dust input and blooms of the giant diatom Ethmodiscus rex. Enrichment of barium (Ba) in relative to upper continental crust (UCC) and low average Rb/K ratios in all study cores point to both hydrothermal and volcaniclastic inputs to the sediments. Both the Sr-Nd isotope compositions and the clay-mineral assemblages of the detrital fraction reflect a two-component mixing system consisting of Mariana arc volcaniclastics and eolian Asian dust. A decrease in smectite content and an increase in illite content just before formation of laminated diatom mats (LDMs) suggest a change in the source of the eolian dust from eastern Asian deserts (EADs) to central Asian deserts (CADs) at the onset of the Last Glacial Maximum (LGM). This observation suggests a causal linkage between atmospheric circulation patterns, the sources of eolian Asian dust, and marine productivity in the western Pacific region. We postulate that the shift to CAD-sourced dust may have played a greater role in promoting biological productivity in the oligotrophic western Pacific Ocean during the LGM than previously realized.

  8. Diversity and structure of periphyton and metaphyton diatom communities in a tropical wetland in Mexico Diversidad y estructura de las comunidades de diatomeas del perifiton y el metafiton en un humedal tropical en México

    Directory of Open Access Journals (Sweden)

    Claudia Ibarra

    2009-12-01

    Full Text Available We investigated the structure and diversity of diatoms in communities of metaphyton and periphyton from the wetland of El Edén Ecological Reserve, Quintana Roo, Mexico. In spite of the close association and communication between these communities, our comparisons reveal that the 2 communities have distinct species assemblages, with the periphyton being more diverse overall. We fit abundance curves for periphyton and metaphyton, and argue that our results are consistent with communities where environmental conditions play a more important role than competition in structuring diatom species assemblages.Investigamos la estructura y la diversidad de las comunidades de diatomeas en el metafiton y el perifiton del humedal de la Reserva Ecológica El Edén, Quintana Roo, México. A pesar de la cercana asociación entre estas comunidades, nuestro análisis revela que tanto el perifiton como el metafiton consisten de distintas asociaciones de especies y el perifiton es el más diverso. Las distribuciones de las abundancias de las especies de diatomeas satisfacen curvas de distribución log-normal; esto significa que en las comunidades estudiadas, las condiciones ambientales juegan un papel más importante que la competencia para determinar su estructura.

  9. Transformation techniques for metabolic engineering of diatoms and haptophytes: current state and prospects.

    Science.gov (United States)

    Velmurugan, Natarajan; Deka, Deepi

    2018-05-01

    Diatoms and haptophytes represent a key segment of the dominant phytoplankton communities that frequently form massive blooms in the photic zone of the ocean and are considered indicators of global climate changes. Diatoms and haptophytes also play a vital role in the biological carbon fixation in the carbon cycles. Carbon partitioning within diatoms and haptophytes possesses a wide range of chemical compounds and storage materials, such as lipids, carbohydrates, and chlorophyll. Among the marine microorganisms, diatoms and haptophytes have been recognized as promising sources of long- and very long-chain polyunsaturated fatty acids (PUFA). So far, a variety of approaches have been employed for genetic modification in the nuclei of diatoms and haptophytes. Studies on transformation and metabolic engineering in various intracellular genomes, such as chloroplast and mitochondria, are scarce. Particle bombardment, Agrobacterium and PEG-mediated gene transfer, and electroporation have been reported for foreign gene transformation into the diatoms and haptophytes. Antibiotics (G418 and chloramphenicol) and herbicides (zeocin, hygromycin, and norflurazon) have been successfully demonstrated as the best selection markers. Despite the availability of a wide range of molecular tools for foreign gene expression in microalgae, very few promoters (lhcf1, nr, h4, ef2, fcp, and pds) have been reported for diatoms and haptophytes. Therefore, in this review, we first summarize the significant progress that has been achieved in transgene expression in diatoms and haptophytes and highlight the importance and availability of recently developed novel tools that are suitable for transgenic expression in diatoms and haptophytes.

  10. Diatom Attachment at Aquatic Interfaces: Molecular Interactions, Mechanisms, and Physiology of Adhesion

    National Research Council Canada - National Science Library

    Gretz, Michael

    1997-01-01

    .... those more hydrophobic and that bacterial 'preconditioning' has variable effects on adhesion; (3) developed methodology for mass culture of fouling diatoms and isolation of adhesive components; (4...

  11. Estructura comunitaria de diatomeas presentes en los sedimentos superficiales de ocho lagos andinos de Chile central Diatoms community structure in superficial sediments of eight Andean lakes of central Chile

    Directory of Open Access Journals (Sweden)

    INGRID E ALVIAL

    2008-03-01

    Full Text Available En este trabajo se analizó la estructura comunitaria de diatomeas depositadas en los sedimentos superficiales de ocho lagos andinos chilenos ubicados entre los 32°49' y 38°48' S. Se encontró un total de 99 taxa de diatomeas, distribuidos en 48 géneros. Del total de taxa, 74 fueron identificados a nivel de especie siendo todos ellos cosmopolitas a excepción de Eunotia andinofrequens, Gomphonema punae, Pinnularia araucanensis y Pinnularia acidicola, entre otras, que están descritos solo para el Hemisferio Sur. Por otro lado, las muestras analizadas presentaron distinta composición florística de diatomeas. De esta manera, en los ensambles diatomológicos depositados en los sedimentos de las lagunas de altura Ocho, Huifa, Ensueño y Negra ubicadas sobre los 2.860 m del nivel del mar, abundaron especies bentónicas, típicas de aguas oligotróficas y acidas como Achnanthidium exiguum, Achnanthidium minutissimum, Encyonema minutum, Pinnularia acidicola y Planothidium lanceolatum. En los ensambles diatomológicos de los lagos Galletué, Icalma y Laja, ubicados bajo los 1.360 m del nivel del mar, abundaron diatomeas planctónicas, características de aguas alcalinas y mesotróficas como Asterionella formosa, Aulacoseira distans, Aulacoseira granulata, Cyclotella stelligera y Rhopalodia gibbaIn this research the taxonomic structure of diatoms in sediments of high mountain lakes was studied. These lakes are located in Chile between 32°49' and 38°48' S in the Andean Cordillera. A total of 99 diatom taxa distributed in 48 genera were identified and all this taxa are cosmopolitan excepting a Eunotia andinofrequens, Gomphonema punae, Pinnularia araucanensis and Pinnularia acidicola, which are know only for the Southern Hemisphere. The assemblages of diatoms were different in the studied lakes. So the high mountain lakes Ocho, Huifa, Ensueño and Negra, dominated benthic diatoms which are typical of oligotrophic and acid waters as Achnanthidium

  12. Factors controlling streambed coverage of Didymosphenia geminata in two regulated streams in the Colorado Front Range

    OpenAIRE

    Miller, Matthew P.; McKnight, Diane M.; Cullis, James D.; Greene, Alicia; Vietti, Kristin; Liptzin, Daniel

    2009-01-01

    Didymosphenia geminata is a stalk-forming freshwater diatom which was historically found primarily in oligotrophic lakes and streams, but has recently become a nuisance species in many lotic systems worldwide. In the last 5–8 years, D. geminata has become established in Boulder Creek and South Boulder Creek, two regulated montane streams in the Front Range of the Colorado Rocky Mountains. Factors that may influence the growth of D. geminata were monitored during the summer of 2006. D. geminat...

  13. Using the index of biotic integrity (IBI) to measure environmental quality in warmwater streams of Wisconsin.

    Science.gov (United States)

    John Lyons

    1992-01-01

    Describes an index based on attributes of fish assemblages that has proven effective in assessing biotic integrity and environmental health in intermediate-sized, warmwater (i.e., too warm for salmonids) streams and rivers of Wisconsin. Provides detailed guidelines for applying this index.

  14. Using assemblage data in ecological indicators: A comparison and evaluation of commonly available statistical tools

    Science.gov (United States)

    Smith, Joseph M.; Mather, Martha E.

    2012-01-01

    Ecological indicators are science-based tools used to assess how human activities have impacted environmental resources. For monitoring and environmental assessment, existing species assemblage data can be used to make these comparisons through time or across sites. An impediment to using assemblage data, however, is that these data are complex and need to be simplified in an ecologically meaningful way. Because multivariate statistics are mathematical relationships, statistical groupings may not make ecological sense and will not have utility as indicators. Our goal was to define a process to select defensible and ecologically interpretable statistical simplifications of assemblage data in which researchers and managers can have confidence. For this, we chose a suite of statistical methods, compared the groupings that resulted from these analyses, identified convergence among groupings, then we interpreted the groupings using species and ecological guilds. When we tested this approach using a statewide stream fish dataset, not all statistical methods worked equally well. For our dataset, logistic regression (Log), detrended correspondence analysis (DCA), cluster analysis (CL), and non-metric multidimensional scaling (NMDS) provided consistent, simplified output. Specifically, the Log, DCA, CL-1, and NMDS-1 groupings were ≥60% similar to each other, overlapped with the fluvial-specialist ecological guild, and contained a common subset of species. Groupings based on number of species (e.g., Log, DCA, CL and NMDS) outperformed groupings based on abundance [e.g., principal components analysis (PCA) and Poisson regression]. Although the specific methods that worked on our test dataset have generality, here we are advocating a process (e.g., identifying convergent groupings with redundant species composition that are ecologically interpretable) rather than the automatic use of any single statistical tool. We summarize this process in step-by-step guidance for the

  15. Summer periphyton community in two streams of the Pampa Plain, Argentina

    Directory of Open Access Journals (Sweden)

    Esquius Karina Soledad

    2011-11-01

    Full Text Available During summer 2001, periphytic algae associated to the giant bulrush Schoenoplectus californicus (Cyperaceae were studied in Los Padres and La Tapera streams (Pampa Plain, Argentina. One hundred and seven taxa were determined, being 76 of them common to both sampling sites. Diversity, total number of taxa and abundance of periphytic algae were greater in stems from the effl uent (La Tapera Stream. Diatoms were the most important group in both streams, according to their richness and abundance. Periphyton from the infl uent (Los Padres Stream was characterized by the dominance of the diatom Navicula cryptocephala and the codominance of another three algae. In contrast in La Tapera Stream, not any species could be recognized as dominant. Periphyton community architecture was more complex in the effl uent, with a high development of fi ve physiognomic groups. In conclusion, algal community attached to S. californicus differs in terms of diversity, abundance and community complexity, possibly due to the diffe rences registered in certain abiotic parameters, mainly in water transparency and velocity.

  16. Contribution of benthic microalgae to the temporal variation in phytoplankton assemblages in a macrotidal system.

    Science.gov (United States)

    Hernández Fariñas, Tania; Ribeiro, Lourenço; Soudant, Dominique; Belin, Catherine; Bacher, Cédric; Lampert, Luis; Barillé, Laurent

    2017-10-01

    Suspended marine benthic microalgae in the water column reflect the close relationship between the benthic and pelagic components of coastal ecosystems. In this study, a 12-year phytoplankton time-series was used to investigate the contribution of benthic microalgae to the pelagic system at a site along the French-Atlantic coast. Furthermore, all taxa identified were allocated into different growth forms in order to study their seasonal patterns. The highest contribution of benthic microalgae was observed during the winter period, reaching up to 60% of the carbon biomass in the water column. The haptobenthic growth form showed the highest contribution in terms of biomass, dominant in the fall-winter period when the turbidity and the river flow were high. The epipelic growth form did not follow any seasonal pattern. The epiphytic diatom Licmophora was most commonly found during summer. As benthic microalgae were found in the water column throughout the year, the temporal variation detected in the structure of pelagic assemblages in a macrotidal ecosystem was partly derived from the differentiated contribution of several benthic growth forms. © 2017 Phycological Society of America.

  17. Automated Diatom Analysis Applied to Traditional Light Microscopy: A Proof-of-Concept Study

    Science.gov (United States)

    Little, Z. H. L.; Bishop, I.; Spaulding, S. A.; Nelson, H.; Mahoney, C.

    2017-12-01

    Diatom identification and enumeration by high resolution light microscopy is required for many areas of research and water quality assessment. Such analyses, however, are both expertise and labor-intensive. These challenges motivate the need for an automated process to efficiently and accurately identify and enumerate diatoms. Improvements in particle analysis software have increased the likelihood that diatom enumeration can be automated. VisualSpreadsheet software provides a possible solution for automated particle analysis of high-resolution light microscope diatom images. We applied the software, independent of its complementary FlowCam hardware, to automated analysis of light microscope images containing diatoms. Through numerous trials, we arrived at threshold settings to correctly segment 67% of the total possible diatom valves and fragments from broad fields of view. (183 light microscope images were examined containing 255 diatom particles. Of the 255 diatom particles present, 216 diatoms valves and fragments of valves were processed, with 170 properly analyzed and focused upon by the software). Manual analysis of the images yielded 255 particles in 400 seconds, whereas the software yielded a total of 216 particles in 68 seconds, thus highlighting that the software has an approximate five-fold efficiency advantage in particle analysis time. As in past efforts, incomplete or incorrect recognition was found for images with multiple valves in contact or valves with little contrast. The software has potential to be an effective tool in assisting taxonomists with diatom enumeration by completing a large portion of analyses. Benefits and limitations of the approach are presented to allow for development of future work in image analysis and automated enumeration of traditional light microscope images containing diatoms.

  18. All New Faces of Diatoms: Potential Source of Nanomaterials and Beyond

    Directory of Open Access Journals (Sweden)

    Meerambika Mishra

    2017-07-01

    Full Text Available Nature’s silicon marvel, the diatoms have lately astounded the scientific community with its intricate designs and lasting durability. Diatoms are a major group of phytoplanktons involved in the biogeochemical cycling of silica and are virtually inherent in every environment ranging from water to ice to soil. The usage of diatoms has proved prudently cost effective and its handling neither requires costly materials nor sophisticated instruments. Diatoms can easily be acquired from the environment, their culture requires ambient condition and does not involve any costly media or expensive instruments, besides, they can be transported in small quantities and proliferated to a desirable confluence from that scratch, thus are excellent cost effective industrial raw material. Naturally occurring diatom frustules are a source of nanomaterials. Their silica bio-shells have raised curiosity among nanotechnologists who hope that diatoms will facilitate tailoring minuscule structures which are beyond the capabilities of material scientists. Additionally, there is a colossal diversity in the dimensions of diatoms as the frustule shape differs from species to species; this provides a scope for the choice of a particular species of diatom to be tailored to an exacting requisite, thus paving the way to create desired three dimensional nanocomposites. The present article explores the use of diatoms in various arenas of science, may it be in nanotechnology, biotechnology, environmental science, biophysics or biochemistry and summarizes facets of diatom biology under one umbrella. Special emphasis has been given to biosilicification, biomineralization and use of diatoms as nanomaterials’, drug delivery vehicles, optical and immune-biosensors, filters, immunodiagnostics, aquaculture feeds, lab-on-a-chip, metabolites, and biofuels.

  19. StreamCat

    Data.gov (United States)

    U.S. Environmental Protection Agency — The StreamCat Dataset provides summaries of natural and anthropogenic landscape features for ~2.65 million streams, and their associated catchments, within the...

  20. Prioritized Contact Transport Stream

    Science.gov (United States)

    Hunt, Walter Lee, Jr. (Inventor)

    2015-01-01

    A detection process, contact recognition process, classification process, and identification process are applied to raw sensor data to produce an identified contact record set containing one or more identified contact records. A prioritization process is applied to the identified contact record set to assign a contact priority to each contact record in the identified contact record set. Data are removed from the contact records in the identified contact record set based on the contact priorities assigned to those contact records. A first contact stream is produced from the resulting contact records. The first contact stream is streamed in a contact transport stream. The contact transport stream may include and stream additional contact streams. The contact transport stream may be varied dynamically over time based on parameters such as available bandwidth, contact priority, presence/absence of contacts, system state, and configuration parameters.

  1. Do landscape factors affect brownfield carabid assemblages?

    International Nuclear Information System (INIS)

    Small, Emma; Sadler, Jon P.; Telfer, Mark

    2006-01-01

    The carabid fauna of 28 derelict sites in the West Midlands (England) were sampled over the course of one growing season (April-October, 1999). The study aimed to investigate the relationship between carabid assemblages and five measures of landscape structure pertinent to derelict habitat. At each site measurements of landscape features pertinent to derelict habitat were made: (i) the proximity of habitat corridors; (ii) the density of surrounding derelict land; (iii) the distance between the site and the rural fringe; and (iv) the size of the site. Concurrent surveys of the soil characteristics, vegetation type, and land use history were conducted. The data were analysed using a combination of ordination (DCA, RDA), variance partitioning (using pRDA) and binary linear regression. The results suggest that:1.There is very little evidence that the carabid assemblages of derelict sites were affected by landscape structure, with assemblages instead being principally related to within-site habitat variables, such as site age (since last disturbance), substrate type and vegetation community. 2.No evidence was found to support the hypothesis that sites away from railway corridors are more impoverished in their carabid fauna than sites on corridors. 3.There are some suggestions from this study that rarer and non-flying specialist species may be affected by isolation, taking longer to reach sites. We infer from this that older sites with retarded succession, and sites in higher densities of surrounding derelict land may eventually become more species rich and that these sites may be important for maintaining populations of rarer and flightless species. 4.Conservation efforts to maintain populations of these species should focus principally on habitat quality issues, such as maintaining early successional habitats that have a diversity of seed producing annuals and perennial plants and enhancing substrate variability rather than landscape issues

  2. Moral assemblages of volunteer tourism development in Cusco, Peru

    OpenAIRE

    Burrai, Elisa.; Mostafanezhad, Mary.; Hannam, Kevin.

    2016-01-01

    In this paper, we develop a conceptual approach from which to examine the moral landscape of volunteer tourism development in Cusco, Peru. Drawing from recent work on assemblage theory in geography and tourism studies, we explore how assemblage thinking can facilitate new understandings of volunteer tourism development. Using assemblage as an analytical framework allows us to understand volunteer tourism as a series of relational, processual, unequal and mobile practices. These practices, we ...

  3. Demersal and larval fish assemblages in the Chukchi Sea

    Science.gov (United States)

    Norcross, Brenda L.; Holladay, Brenda A.; Busby, Morgan S.; Mier, Kathryn L.

    2010-01-01

    A multidisciplinary research cruise was conducted in the Chukchi Sea in summer 2004 during which we investigated assemblages of small demersal fishes and ichthyoplankton and the water masses associated with these assemblages. This study establishes a baseline of 30 demersal fish and 25 ichthyoplankton taxa in US and Russian waters of the Chukchi Sea. Presence/absence of small demersal fish clustered into four assemblages: Coastal Fishes, Western Chukchi Fishes, South Central Chukchi Fishes, and North Central Chukchi Fishes. Habitats occupied by small demersal fishes were characterized by sediment type, bottom salinity, and bottom temperature. Abundance of ichthyoplankton grouped into three assemblages with geographical extent similar to that of the bottom assemblages, except that there was a single assemblage for Central Chukchi Fishes. Water-column temperature and salinity characterized ichthyoplankton habitats. Three water masses, Alaska Coastal Water, Bering Sea Water, and Winter Water, were identified from both bottom and depth-averaged water-column temperature and salinity. A fourth water mass, Resident Chukchi Water, was identified only in the bottom water. The water mass and habitat characteristics with which demersal and larval fish assemblages were associated create a baseline to measure anticipated effects of climate change that are expected to be most severe at high latitudes. Monitoring fish assemblages could be a tool for assessing the effects of climate change. Climate-induced changes in distributions of species would result in a restructuring of fish assemblages in the Chukchi Sea.

  4. Detecting carbon uptake and cellular allocation by individual algae in multispecies assemblages: Tracking carbon into single algal cells

    Energy Technology Data Exchange (ETDEWEB)

    Murdock, Justin N. [USDA Agricultural Research Service, National Sedimentation Laboratory, Oxford Mississippi; Department of Biology, Tennessee Technological University, Cookeville Tennessee

    2015-11-03

    Algal species vary in carbon (C) need and uptake rates. Understanding differences in C uptake and cellular allocation among species from natural communities will bring new insight into many ecosystem process questions including how species changes will alter energy availability and C sequestration in aquatic ecosystems. A major limitation of current methods that measure algal C incorporation is the inability to separate the response of individual species from mixed-species assemblages. I used Fourier-transform infrared microspectroscopy to qualitatively measure inorganic 13C isotope incorporation into individual algal cells in single species, two species, and natural phytoplankton assemblages. Lateral shifts in spectral peaks from 13C treatments were observed in all species. Comparison of peaks associated with carbohydrates, proteins, and lipids allowed for the detection of which individuals took in C, and which macromolecules the C was used to make. For example, shifts in Spirogyra spectral peaks showed substantial C incorporation in carbohydrates. Further, shifts in peaks at 1160 cm-1, 1108 cm-1, 1080 cm-1, 1048 cm-1, and 1030 cm-1 suggested C was being allocated into cellulose. The natural phytoplankton assemblage demonstrated how C could be tracked into co-occurring species. A diatom had large shifts in protein and carbohydrate peaks, while a green alga and euglenoid had only a few shifts in protein related peaks. Fourier-transform infrared microspectroscopy is an established, label free method for measuring the chemical composition of algal cells. However, adding a label such as 13C isotope can greatly expand the technique's capabilities by qualitatively tracking C movement between inorganic and organic states within single cells.

  5. Productivity of Stream Definitions

    NARCIS (Netherlands)

    Endrullis, Jörg; Grabmayer, Clemens; Hendriks, Dimitri; Isihara, Ariya; Klop, Jan

    2007-01-01

    We give an algorithm for deciding productivity of a large and natural class of recursive stream definitions. A stream definition is called ‘productive’ if it can be evaluated continuously in such a way that a uniquely determined stream is obtained as the limit. Whereas productivity is undecidable

  6. Productivity of stream definitions

    NARCIS (Netherlands)

    Endrullis, J.; Grabmayer, C.A.; Hendriks, D.; Isihara, A.; Klop, J.W.

    2008-01-01

    We give an algorithm for deciding productivity of a large and natural class of recursive stream definitions. A stream definition is called ‘productive’ if it can be evaluated continually in such a way that a uniquely determined stream in constructor normal form is obtained as the limit. Whereas

  7. Growth inhibition of fouling bacteria and diatoms by extract of terrestrial plant, @iDerris scandens@@ (Dicotyledonae:Leguminocae)

    Digital Repository Service at National Institute of Oceanography (India)

    Sawant, S.S.; Sonak, S.; Garg, A.

    Methanol extract of terrestrial plant, @iDerris scandens@@ Benth, was found to inhibit growth of four diatoms and 7 bacterial species of fouling community. The concentrations required to bring about 100% inhibition of growth of the diatoms ranged...

  8. Growth inhibition of fouling bacteria and diatoms by extract of terrestrial plant, Derris scandens (Dicotyledonae:Leguminocae)

    Digital Repository Service at National Institute of Oceanography (India)

    Sawant, S.S.; Sonak, S.; Garg, A.

    Methanol extract of terrestrial plant, Derris scandens Benth, was found to inhibit growth of four diatoms and 7 bacterial species of fouling community. The concentrations required to bring about 100% inhibition of growth of the diatoms ranged...

  9. Action Spectrum of Photoinhibition in the Diatom Phaeodactylum tricornutum.

    Science.gov (United States)

    Havurinne, Vesa; Tyystjärvi, Esa

    2017-12-01

    Light-dependent electron transfer is necessary for photosynthesis, but light also damages PSII. Light-induced damage to PSII is called photoinhibition, and the damaging reactions of photoinhibition are still under debate. Diatoms possess an exotic combination of light-harvesting pigments, Chls a/c and fucoxanthin, making them an interesting platform for studying the photoreceptors of photoinhibition. We first confirmed the direct proportionality of photoinhibition to the photon flux density of incident light in the diatom Phaeodactylum tricornutum. Phaeodactylum is known for its efficient non-photochemical quenching, and the effect of this photoprotective mechanism on photoinhibition was tested. Photoinhibition proceeded essentially at the same rate in blue-light-grown Phaeodactylum cells that are capable of non-photochemical quenching and in red-light-grown, non-photochemical quenching-deficient cells. To obtain more insight into how the pigment composition of diatoms affects photoinhibition, we measured the action spectrum of photoinhibition in Phaeodactylum. In visible light, the action spectrum resembled the absorption spectrum of Phaeodactylum, and UV radiation caused much more photoinhibition than visible light. Comparison of the action spectrum of photoinhibition with the absorption spectrum and the excitation spectrum of 77 K PSII fluorescence emission confirmed that photosynthetic pigments are involved in photoinhibition, but the photoinhibitory efficiency of red light is weak, suggesting that the role of light-harvesting pigments as light receptors of photoinhibition is secondary. Finally, we compared photoinhibition in Phaeodactylum with that in other photosynthetic organisms, and our data indicate that the PSII reaction centers of Phaeodactylum are not particularly well protected against the primary damage of photoinhibition. © The Author 2017. Published by Oxford University Press on behalf of Japanese Society of Plant Physiologists. All rights

  10. Optimizing CRISPR/Cas9 for the Diatom Phaeodactylum tricornutum

    Directory of Open Access Journals (Sweden)

    Daniel Stukenberg

    2018-06-01

    Full Text Available CRISPR/Cas9 is a powerful tool for genome editing. We constructed an easy-to-handle expression vector for application in the model organism Phaeodactylum tricornutum and tested its capabilities in order to apply CRISPR/Cas9 technology for our purpose. In our experiments, we targeted two different genes, screened for mutations and analyzed mutated diatoms in a three-step process. In the end, we identified cells, showing either monoallelic or homo-biallelic targeted mutations. Thus, we confirm that application of the CRISPR/Cas9 system for P. tricornutum is very promising, although, as discussed, overlooked pitfalls have to be considered.

  11. Seasonal effects of cadmium accumulation in periphytic diatom communities of freshwater biofilms

    International Nuclear Information System (INIS)

    Thi Thuy Duong; Morin, Soizic; Herlory, Olivier; Feurtet-Mazel, Agnes; Coste, Michel; Boudou, Alain

    2008-01-01

    The relationships between diatom species and cadmium (Cd) accumulated in biofilms of the Riou-Mort River (SW, France) were studied in July 2004 and March 2005. Biofilms were sampled from artificial substrates immersed along a metallic pollution gradient during 20 days. Dynamics of diatom communities and cadmium accumulation were followed by collecting samples after 4, 7, 14 and 20 days of biofilm colonization. Cd accumulation in biofilms during experiment was significantly higher in Cd polluted station (Joanis) than in reference station (Firmi) for both seasons. Periphytic diatom composition varied between sites and seasons. At Firmi station, seasonal dynamics of diatom communities were stable with the dominance of Cyclotella meneghiniana and Melosira varians in July and Surirellabrebissonnii and Navicula gregaria in March. At Joanis station, diatom communities mainly responded to high levels of metal by a high proportion of small, adnate species. Positive correlations between Eolimna minima, Nitzschia palea, Encyonema minutum, Surirella angusta, and Gomphonema parvulum and cadmium accumulation were observed, indicating that these species are tolerant to high levels of cadmium. On the other hand, negative correlations of C. meneghiniana, N. gregaria, Navicula lanceolata, M. varians and Nitzschia dissipata with cadmium qualify them as sensitive diatom species. Periphytic diatom composition through the presence of specific species highlight metal tolerant indicator diatom groups which will be meaningful for biomonitoring pollution in natural aquatic systems

  12. Grazer-induced transcriptomic and metabolomic response of the chain-forming diatom Skeletonema marinoi

    DEFF Research Database (Denmark)

    Amato, Alberto; Sabatino, Valeria; Nylund, Göran M.

    2018-01-01

    Diatoms and copepods are main actors in marine food webs. The prey-predator interactions between them affect bloom dynamics, shape marine ecosystems and impact the energy transfer to higher trophic levels. Recently it has been demonstrated that the presence of grazers may affect the diatom prey b...

  13. Rotation-vibrational spectra of diatomic molecules and nuclei with Davidson interactions

    CERN Document Server

    Rowe, D J

    1998-01-01

    Complete rotation-vibrational spectra and electromagnetic transition rates are obtained for Hamiltonians of diatomic molecules and nuclei with Davidson interactions. Analytical results are derived by dynamical symmetry methods for diatomic molecules and a liquid-drop model of the nucleus. Numerical solutions are obtained for a many-particle nucleus with quadrupole Davidson interactions within the framework of the microscopic symplectic model. (author)

  14. Contribution to the Study of the flora diatomic Nahr Yahfufah (Lebanon)

    International Nuclear Information System (INIS)

    SLIM, K.; ALOUF, N.

    1984-01-01

    Contribution to the study of Diatomic flora on Nahr Yahfufah Lebanon. From October 1980 to June 1982 a hydrobiologic study has taken place on the river of Yahfufah situated to the west of anti Lebanon. From the diatomic population 52 species and varieties were designated. Further more the physico-chemical parameters were followed and studied. (author).

  15. Adaptive significance of phytoplankton stickiness with emphasis on the diatom Skeletonema costatum

    DEFF Research Database (Denmark)

    Hansen, J.L.S.; Timm, U.; Kiørboe, Thomas

    1995-01-01

    Diatom aggregate formation was analyzed using coagulation theory. Population dynamics models show that coagulation has an important impact on species succession during diatom blooms. When different species collide and form mixed aggregates this process causes interspecific interference competitio...... was tested on field data, and the predicted dynamics of a spring bloom was very similar to that observed...

  16. Impact of marine influence and cultivation on the diatom flora of ...

    African Journals Online (AJOL)

    During a limnological and palaeolimnological study of the western part of the Great Coast of Senegal, an analysis of diatoms was carried out in Thiaroye Pond in the suburbs of Dakar. Current diatom flora in the water and on floating plants, and subfossil flora in two cores were sampled in 1996 and 2003. A total of 104 ...

  17. Seasonal effects of cadmium accumulation in periphytic diatom communities of freshwater biofilms

    Energy Technology Data Exchange (ETDEWEB)

    Thi Thuy Duong [Institute of Environmental Technology, Vietnamese Academy of Science and Technology, 18 Hoang Quoc Viet Road, Cau Giay, Hanoi (Viet Nam); Universite de Bordeaux 1, CNRS, UMR 5805 EPOC, Place du Dr Peyneau, 33120 Arcachon (France)], E-mail: duongthuy0712@yahoo.com; Morin, Soizic [Cemagref, UR REBX, 50 avenue de Verdun, F-33612 Cestas cedex (France); Herlory, Olivier [Universite de Bordeaux 1, CNRS, UMR 5805 EPOC, Place du Dr Peyneau, 33120 Arcachon (France); Feurtet-Mazel, Agnes [Universite de Bordeaux 1, CNRS, UMR 5805 EPOC, Place du Dr Peyneau, 33120 Arcachon (France)], E-mail: a.feurtet-mazel@epoc.u-bordeaux1.fr; Coste, Michel [Cemagref, UR REBX, 50 avenue de Verdun, F-33612 Cestas cedex (France); Boudou, Alain [Universite de Bordeaux 1, CNRS, UMR 5805 EPOC, Place du Dr Peyneau, 33120 Arcachon (France)

    2008-10-20

    The relationships between diatom species and cadmium (Cd) accumulated in biofilms of the Riou-Mort River (SW, France) were studied in July 2004 and March 2005. Biofilms were sampled from artificial substrates immersed along a metallic pollution gradient during 20 days. Dynamics of diatom communities and cadmium accumulation were followed by collecting samples after 4, 7, 14 and 20 days of biofilm colonization. Cd accumulation in biofilms during experiment was significantly higher in Cd polluted station (Joanis) than in reference station (Firmi) for both seasons. Periphytic diatom composition varied between sites and seasons. At Firmi station, seasonal dynamics of diatom communities were stable with the dominance of Cyclotella meneghiniana and Melosira varians in July and Surirellabrebissonnii and Navicula gregaria in March. At Joanis station, diatom communities mainly responded to high levels of metal by a high proportion of small, adnate species. Positive correlations between Eolimna minima, Nitzschia palea, Encyonema minutum, Surirella angusta, and Gomphonema parvulum and cadmium accumulation were observed, indicating that these species are tolerant to high levels of cadmium. On the other hand, negative correlations of C. meneghiniana, N. gregaria, Navicula lanceolata, M. varians and Nitzschia dissipata with cadmium qualify them as sensitive diatom species. Periphytic diatom composition through the presence of specific species highlight metal tolerant indicator diatom groups which will be meaningful for biomonitoring pollution in natural aquatic systems.

  18. Paleoceanographic, and paleoclimatic constraints on the global Eocene diatom and silicoflagellate record

    Science.gov (United States)

    Barron, John A.; Stickley, Catherine E.; Bukry, David

    2015-01-01

    Eocene diatom and silicoflagellate biostratigraphy are summarized and correlated with the most recent geologic time scale as well as with the global oxygen isotope and eustatic sea level curves. The global distribution of Eocene diatom/silicoflagellate-bearing sediments varies considerably, reflecting changing oceanic gateways and paleoceanography with changing patterns that are punctuated by four major depositional events.

  19. An integrated analysis of molecular acclimation to high light in the marine diatom Phaeodactylum tricornutum

    DEFF Research Database (Denmark)

    Nymark, Marianne; Valle, Kristin C; Brembu, Tore

    2009-01-01

    Photosynthetic diatoms are exposed to rapid and unpredictable changes in irradiance and spectral quality, and must be able to acclimate their light harvesting systems to varying light conditions. Molecular mechanisms behind light acclimation in diatoms are largely unknown. We set out to investiga...

  20. Diatoms as water quality indicators in the upper reaches of the Great ...

    African Journals Online (AJOL)

    All index scores showed the Great Fish River to be impacted, and showed significant correlations of diatom species abundance with pH, NO3-N, electrical conductivity, NH4-N and CaCO3. Analysis revealed EC and NO3-N as the main environmental drivers affecting diatom commnity composition, followed by pH and ...

  1. Spatial and Temporal Variations in Diatoms from la Chaine des Lacs Urban Watershed, Nord-Pas France, in Relation to Water Quality

    Science.gov (United States)

    Noble, P. J.; Van de Vijver, B.; Verleyen, E.; Prygiel, J.; Ivanovsky, A.; Lesven, L.; Billon, G.

    2016-12-01

    Diatom analysis was conducted on lake sediments in la Chaîne des Lacs (CDL), a shallow eutrophic urban park and storm control system in Villeneuve d'Ascq, France, to address both the present day water quality, and the evolution of this urban system over its 40 year history. The main lake, Lac du Héron (LDH), received recent attention because of water quality problems, including eutrophication, harmful algal blooms, and invasion by the macrophyte Elodea in 2012. A total of 17 sites were collected in CDL, 11 of which were in LDH, to document spatial variability, and a 26cm long core addresses historical changes. The bulk of the diatom assemblage in LDH can be classified as both eutrophic and moderately metal tolerant, using modern national diatom indices developed and used by the French regional water agencies. Surface sediment samples within LDH show large spatial variations in %Cocconeis placentula whose habitat is epiphytic growth on Elodea. Other variation is reflected in the phytoplankton composition both spatially, and interannually. Aulacoseira muzzanensis and Cyclostephanos dubius showed greater abundance in the open water habitats in LDH, whereas sites in CDL outside of LDH had greater Cyclotella meneghiniana. Temporally, Stephanodicsus (largely S. hantzschii), the dominant diatom in early spring, were present in greater abundances in the 2016 surface sediment samples than in any of the 2015 samples. One possible explanation is that the 2016 samples, taken March 30th, preferentially preserved the early spring Stephanodiscus bloom, in contrast to the 2015 samples, which were taken in January. The sediment core provides an historical record, where the uppermost 4cm plot with the bulk of the LDH surface samples and contain abundant Cocconeis, 4 -14cm is phytoplankton-rich, largely Cyclostephanos dubius and Aulacoseira muzzanensis, and represents a less weed-choked environment prior to the 2012 Elodea invasion. The base of the core is dominated by Amphora and

  2. Holocene molluscan assemblages in the Magellan region

    Directory of Open Access Journals (Sweden)

    Sandra Gordillo

    1999-12-01

    Full Text Available In the Magellan region, much of the shoreline of the Beagle Channel coast (54°53´S; 67° - 68°W is bordered by Holocene raised beaches, which contain a large number of molluscs and other shelled taxa. The purpose of this work is to document the presence of various molluscan assemblages deposited with little or no postmortem transportation. An epifaunal Chlamys patagonica palaeocommunity (ca. 8,000 - 7,000 BP and three infaunal (Tawera gayi, Ameghinomya antiqua - Hiatella solida and Ameghinomya antiqua - Ensis macha palaeocommunities (ca. 4,400 - 4,000 BP were recognized. All the assemblages studied represent shallow, subtidal, cold-temperate environments. Based on comparisons with modern benthic communities in this region, these associations show that no remarkable ecologic and climatic changes occurred during the period ca. 8,000 - 4,000 BP. Thus, an apparent stability of modern marine communities over a period of several thousand years is suggested.

  3. Techniques de formage et d'assemblage

    CERN Document Server

    Favre, G; CERN. Geneva. TS Department

    2004-01-01

    Les sections Techniques d'Assemblage du groupe EST/MF et Brasage du groupe EST/SM ont été groupées en un seul service dans un but de rationalisation accrue des ressources et méthodes. Ce service dispose de nombreux moyens : soudure et découpe LASER (YAG, 350 W), soudure par faisceau d'électrons (deux installations, 35 et 7.5 kW), équipements TIG orbital, jet line, MIG, soudure plasma, boîte à gants, portique de soudage trois axes multiprocédés, presses plieuses, rouleuses, moyens de repoussage, alimentation à induction 12 kW et divers fours sous vide et à air. Le service est composé de 17 personnes dont la polyvalence est encouragée. Les activités de la section seront décrites à travers quelques exemples significatifs récents, notamment : l'assemblage des amenées de courant HTS, la réalisation des chambres LSS, des tubes HET, d'enveloppes céramiques pour détecteurs PET-HPD, le brasage de RFQ, la soudure du Barrel d'ATLAS ou encore le soudage des lignes de thermalisation du toroïde d'AT...

  4. Reservoir floodplains support distinct fish assemblages

    Science.gov (United States)

    Miranda, Leandro E.; Wigen, S. L.; Dagel, Jonah D.

    2014-01-01

    Reservoirs constructed on floodplain rivers are unique because the upper reaches of the impoundment may include extensive floodplain environments. Moreover, reservoirs that experience large periodic water level fluctuations as part of their operational objectives seasonally inundate and dewater floodplains in their upper reaches, partly mimicking natural inundations of river floodplains. In four flood control reservoirs in Mississippi, USA, we explored the dynamics of connectivity between reservoirs and adjacent floodplains and the characteristics of fish assemblages that develop in reservoir floodplains relative to those that develop in reservoir bays. Although fish species richness in floodplains and bays were similar, species composition differed. Floodplains emphasized fish species largely associated with backwater shallow environments, often resistant to harsh environmental conditions. Conversely, dominant species in bays represented mainly generalists that benefit from the continuous connectivity between the bay and the main reservoir. Floodplains in the study reservoirs provided desirable vegetated habitats at lower water level elevations, earlier in the year, and more frequently than in bays. Inundating dense vegetation in bays requires raising reservoir water levels above the levels required to reach floodplains. Therefore, aside from promoting distinct fish assemblages within reservoirs and helping promote diversity in regulated rivers, reservoir floodplains are valued because they can provide suitable vegetated habitats for fish species at elevations below the normal pool, precluding the need to annually flood upland vegetation that would inevitably be impaired by regular flooding. Published 2013. This article is a U.S. Government work and is in the public domain in the USA.

  5. Environmental stressors afflicting tailwater stream reaches across the United States

    Science.gov (United States)

    Miranda, Leandro E.; Krogman, R. M.

    2014-01-01

    The tailwater is the reach of a stream immediately below an impoundment that is hydrologically, physicochemically and biologically altered by the presence and operation of a dam. The overall goal of this study was to gain a nationwide awareness of the issues afflicting tailwater reaches in the United States. Specific objectives included the following: (i) estimate the percentage of reservoirs that support tailwater reaches with environmental conditions suitable for fish assemblages throughout the year, (ii) identify and quantify major sources of environmental stress in those tailwaters that do support fish assemblages and (iii) identify environmental features of tailwater reaches that determine prevalence of key fish taxa. Data were collected through an online survey of fishery managers. Relative to objective 1, 42% of the 1306 reservoirs included in this study had tailwater reaches with sufficient flow to support a fish assemblage throughout the year. The surface area of the reservoir and catchment most strongly delineated reservoirs maintaining tailwater reaches with or without sufficient flow to support a fish assemblage throughout the year. Relative to objective 2, major sources of environmental stress generally reflected flow variables, followed by water quality variables. Relative to objective 3, zoogeography was the primary factor discriminating fish taxa in tailwaters, followed by a wide range of flow and water quality variables. Results for objectives 1–3 varied greatly among nine geographic regions distributed throughout the continental United States. Our results provide a large-scale view of the effects of reservoirs on tailwater reaches and may help guide research and management needs.

  6. Caddisflies as biomonitors identifying thresholds of toxic metal bioavailability that affect the stream benthos

    International Nuclear Information System (INIS)

    Rainbow, Philip S.; Hildrew, Alan G.; Smith, Brian D.; Geatches, Tim; Luoma, Samuel N.

    2012-01-01

    It has been proposed that bioaccumulated concentrations of toxic metals in tolerant biomonitors be used as indicators of metal bioavailability that could be calibrated against the ecological response to metals of sensitive biotic assemblages. Our hypothesis was that metal concentrations in caddisfly larvae Hydropsyche siltalai and Plectrocnemia conspersa, as tolerant biomonitors, indicate metal bioavailability in contaminated streams, and can be calibrated against metal-specific ecological responses of mayflies. Bioaccumulated concentrations of Cu, As, Zn and Pb in H. siltalai from SW English streams were related to the mayfly assemblage. Mayflies were always sparse where bioavailabilities were high and were abundant and diverse where bioavailabilities of all metals were low, a pattern particularly evident when the combined abundance of heptageniid and ephemerellid mayflies was the response variable. The results offer promise that bioaccumulated concentrations of metals in tolerant biomonitors can be used to diagnose ecological impacts on stream benthos from metal stressors. - Highlights: ► Metal concentrations in caddisfly larvae can be calibrated against mayfly ecological responses. ► Cu, As, Zn and Pb concentrations in Hydropsyche siltalai were related to stream mayfly assemblages. ► Mayflies were sparse in high metal bioavailabilities, and abundant in low bioavailabilities. ► Joint heptageniid and ephemerellid mayfly abundance was the most sensitive response variable. ► Copper, arsenic and, in one catchment, lead were the primary stressors limiting mayfly abundance. - Accumulated metal concentrations in tolerant biomonitors can be used to detect and diagnose ecological impacts on freshwater stream benthos from metal stressors.

  7. Relationships among rotational and conventional grazing systems, stream channels, and macroinvertebrates

    Science.gov (United States)

    Raymond, K.L.; Vondracek, B.

    2011-01-01

    Cattle grazing in riparian areas can reduce water quality, alter stream channel characteristics, and alter fish and macroinvertebrate assemblage structure. The U.S. Department of Agriculture, Natural Resources Conservation Services has recommended Rotational Grazing (RG) as an alternative management method on livestock and dairy operations to protect riparian areas and water quality. We evaluated 13 stream channel characteristics, benthic macroinvertebrate larvae (BML), and chironomid pupal exuviae (CPE) from 18 sites in the Upper Midwest of the United States in relation to RG and conventional grazing (CG). A Biotic Composite Score comprised of several macroinvertebrate metrics was developed for both the BML assemblage and the CPE assemblage. Multi-Response Permutation Procedures (MRPP) indicated a significant difference in stream channel characteristics between RG and CG. Nonmetric Multidimensional Scaling indicated that RG sites were associated with more stable stream banks, higher quality aquatic habitat, lower soil compaction, and larger particles in the streambed. However, neither MRPP nor Mann-Whitney U tests demonstrated a difference in Biotic Composite Scores for BML or CPE along RG and CG sites. The BML and CPE metrics were significantly correlated, indicating that they were likely responding to similar variables among the study sites. Although stream channel characteristics appeared to respond to grazing management, BML and CPE may have responded to land use throughout the watershed, as well as local land use. ?? 2011 Springer Science+Business Media B.V. (outside the USA).

  8. Fossil diatoms imply common cometary origin of space-dust and the Polonnaruwa meteorite

    Science.gov (United States)

    Miyake, N.; Wallis, M. K.; Wickramasinghe, N. C.

    2013-09-01

    IDPs collected in 2001 at 40km altitude by cryosamplers studied via scanning electron microscopy and EDX were found to contain siliceous fibres and whiskers, some isolated but often embedded in a mineral matrix. The newly-arrived Polonnaruwa meteorite gives strong evidence for the hypothesis that they are fragments of diatoms agglomerating on solar system icy bodies. Diatom frustules and even whole diatom skeletons are identifiable within the meteorite. Specimens of a siliceous exoskeleton with multiple spines/whiskers have also been found, thought to be freshwater diatoms. As diatoms are dependent on a source of nitrogenous organics, the siliceous whiskers within IDPs would be an indicator of a photosynthesizing ecosystem, probably on a comet.

  9. Intensive aggregate formation with low vertical flux during an upwelling-induced diatom bloom

    DEFF Research Database (Denmark)

    Kiørboe, Thomas; Tiselius, P.; Mitchell-Innes, B.

    1998-01-01

    of turbulent shear in the ocean such stickiness coefficients predict very high specific coagulation rates (0.3 d(-1)). In situ video observation demonstrated the occurrence of abundant diatom aggregates with surface water concentrations between 1,000 and 3,000 ppm. Despite the very high concentration......The surfaces of most pelagic diatoms are sticky at times and may therefore form rapidly settling aggregates by physical coagulation. Stickiness and aggregate formation may be particularly adaptive in upwelling systems by allowing the retention of diatom populations in the vicinity of the upwelling...... center. We therefore hypothesized that upwelling diatom blooms are terminated by aggregate formation and rapid sedimentation. We monitored the development of a maturing diatom (mainly Chaetoceros spp.) bloom in the Benguela upwelling current during 7 d in February. Chlorophyll concentrations remained...

  10. Growth of fouling diatoms from the Zuari estuary, Goa (west coast of India) under different salinities in the laboratory

    Digital Repository Service at National Institute of Oceanography (India)

    Redekar, P.D.; Wagh, A.B.

    Diatoms take part in the initial process of fouling i.e. primary film formation. In order to understand the growth of the diatoms under different salinity conditions in the laboratory, this work was undertaken. Fouling diatoms on glass slides were...

  11. In vivo exposure to northern diatoms arrests sea urchin embryonic development.

    Science.gov (United States)

    Gudimova, Elena; Eilertsen, Hans C; Jørgensen, Trond Ø; Hansen, Espen

    2016-01-01

    There are numerous reports indicating that marine diatoms may act harmful to early developmental stages of invertebrates. It is believed that the compounds responsible for these detrimental effects are oxylipins resulting from oxidized polyunsaturated fatty acids, and that they may function as grazing deterrents. Most studies reporting these effects have exposed test organisms to diatom extracts or purified toxins, but data from in vivo exposure to intact diatoms are scarce. We have conducted sea urchin egg incubation and plutei feeding experiments to test if intact diatom cells affected sea urchin embryo development and survival. This was done by exposing the common northern sea urchins Strongylocentrotus droebachiensis and Echinus acutus to northern strains of the diatoms Chaetoceros socialis, Skeletonema marinoi, Chaetoceros furcellatus, Attheya longicornis, Thalassiosira gravida and Porosira glacialis. The intact diatom cell suspensions were found to inhibit sea urchin egg hatching and embryogenesis. S. marinoi was the most potent one as it caused acute mortality in S. droebachiensis eggs after only four hours exposure to high (50 μg/L Chla) diatom concentrations, as well as 24 h exposure to normal (20 μg/L Chla) and high diatom concentrations. The second most potent species was T. gravida that caused acute mortality after 24 h exposure to both diatom concentrations. A. longicornis was the least harmful of the diatom species in terms of embryo development arrestment, and it was the species that was most actively ingested by S. droebachiensis plutei. Copyright © 2015 The Authors. Published by Elsevier Ltd.. All rights reserved.

  12. Symmetries and rotational line intensities in diatomic molecules

    International Nuclear Information System (INIS)

    Veseth, L.

    1986-02-01

    The general theory of angular momenta and the full rotation group is used to reconsider the theory of the intensity factors of rotational lines in the spectra of diatomic molecules (Hoenl-London factors). It is shown that the use of the rotational symmetry (rotation matrices) leads to compact derivations of the symmetry properties of the molecular wave functions, as well as the matrix elements of the transitions operator. The present work is restricted to spin-allowed electric dipole transitions, and the general sum rule characteristic of this type of transitions is rederived by use of the general angular momentum theory. A main purpose of the present work has been to provide a unified theoretical basis for exact numerical computations of Hoenl-London factors for all types of spin-allowed electric dipole transitions in diatomic molecules. The computed Hoenl-London factors are then in the next step intended to be the basis for construction of synthetic molecular band spectra, with particular applications to upper atmosperic emissions (aurora)

  13. Toxic Diatom Aldehydes Affect Defence Gene Networks in Sea Urchins.

    Directory of Open Access Journals (Sweden)

    Stefano Varrella

    Full Text Available Marine organisms possess a series of cellular strategies to counteract the negative effects of toxic compounds, including the massive reorganization of gene expression networks. Here we report the modulated dose-dependent response of activated genes by diatom polyunsaturated aldehydes (PUAs in the sea urchin Paracentrotus lividus. PUAs are secondary metabolites deriving from the oxidation of fatty acids, inducing deleterious effects on the reproduction and development of planktonic and benthic organisms that feed on these unicellular algae and with anti-cancer activity. Our previous results showed that PUAs target several genes, implicated in different functional processes in this sea urchin. Using interactomic Ingenuity Pathway Analysis we now show that the genes targeted by PUAs are correlated with four HUB genes, NF-κB, p53, δ-2-catenin and HIF1A, which have not been previously reported for P. lividus. We propose a working model describing hypothetical pathways potentially involved in toxic aldehyde stress response in sea urchins. This represents the first report on gene networks affected by PUAs, opening new perspectives in understanding the cellular mechanisms underlying the response of benthic organisms to diatom exposure.

  14. Study on the excited diatomic molecules of rare gas

    International Nuclear Information System (INIS)

    Kasama, Kunihiko; Arai, Shigeyoshi

    1981-01-01

    The study on the excited diatomic molecules of rare gas is presented. The absorption spectra, the mechanism of formation and attenuation and the reactions with other molecules are described. The excitation of rare gas was made by using a pulsed electron beam generator. The absorption of excited diatomic molecules was measured as the functions of time. Two absorption peaks were observed. The electron states of rare gases were estimated. The observed and calculated transition values were given for each peak. The absorption spectra of Ne change with time. The spectra of Ar do not change with time. Four and eleven absorption maxima were seen in the spectra of Kr and Xe, respectively. In the case of Ar, the thermal equilibrium existed. The constants of the production and attenuation rates were obtained as the functions of Ar gas pressure. In the case of Ne, there wad definitely the time dependence of absorption spectra. The attenuation constant was obtained for each transition between various vibration levels. It is necessary to consider the relaxation from high vibrational levels. The energy transfer between vibrational levels hardly occurred in Ne because the intervals are large. When there are other molecules, the attnuation was accelerated. (Kato, T.)

  15. Benthic invertebrate fauna, small streams

    Science.gov (United States)

    J. Bruce Wallace; S.L. Eggert

    2009-01-01

    Small streams (first- through third-order streams) make up >98% of the total number of stream segments and >86% of stream length in many drainage networks. Small streams occur over a wide array of climates, geology, and biomes, which influence temperature, hydrologic regimes, water chemistry, light, substrate, stream permanence, a basin's terrestrial plant...

  16. Here Comes the Sun ... and I Say, "It' an Assemblage"

    Science.gov (United States)

    Skophammer, Karen

    2011-01-01

    In this article, the author discusses how she combines science lesson with a hands-on art project. She used the wonderfully creative suns shown on the Sunday edition of "The CBS Morning Show" to give the students fodder for thought. She describes how to create an assemblage. An assemblage is like a collage, but it moves past the two-dimensional…

  17. Importance of terrestrial arthropods as subsidies in lowland Neotropical rain forest stream ecosystems

    Science.gov (United States)

    Small, Gaston E.; Torres, Pedro J.; Schwizer, Lauren M.; Duff, John H.; Pringle, Catherine M.

    2013-01-01

    The importance of terrestrial arthropods has been documented in temperate stream ecosystems, but little is known about the magnitude of these inputs in tropical streams. Terrestrial arthropods falling from the canopy of tropical forests may be an important subsidy to tropical stream food webs and could also represent an important flux of nitrogen (N) and phosphorus (P) in nutrient-poor headwater streams. We quantified input rates of terrestrial insects in eight streams draining lowland tropical wet forest in Costa Rica. In two focal headwater streams, we also measured capture efficiency by the fish assemblage and quantified terrestrially derived N- and P-excretion relative to stream nutrient uptake rates. Average input rates of terrestrial insects ranged from 5 to 41 mg dry mass/m2/d, exceeding previous measurements of aquatic invertebrate secondary production in these study streams, and were relatively consistent year-round, in contrast to values reported in temperate streams. Terrestrial insects accounted for half of the diet of the dominant fish species, Priapicthys annectens. Although terrestrially derived fish excretion was found to be a small flux relative to measured nutrient uptake rates in the focal streams, the efficient capture and processing of terrestrial arthropods by fish made these nutrients available to the local stream ecosystem. This aquatic-terrestrial linkage is likely being decoupled by deforestation in many tropical regions, with largely unknown but potentially important ecological consequences.

  18. Processing and characterization of diatom nanoparticles and microparticles as potential source of silicon for bone tissue engineering

    Energy Technology Data Exchange (ETDEWEB)

    Le, Thi Duy Hanh [Department of Industrial Engineering, University of Trento, Trento (Italy); BIOtech Research Center and European Institute of Excellence on Tissue Engineering and Regenerative Medicine, Trento (Italy); Bonani, Walter [Department of Industrial Engineering, University of Trento, Trento (Italy); BIOtech Research Center and European Institute of Excellence on Tissue Engineering and Regenerative Medicine, Trento (Italy); Interuniversity Consortium for Science and Technology of Materials, Trento Research Unit, Trento (Italy); Speranza, Giorgio [Center for Materials and Microsystems, PAM-SE, Fondazione Bruno Kessler, Trento (Italy); Sglavo, Vincenzo; Ceccato, Riccardo [Department of Industrial Engineering, University of Trento, Trento (Italy); Maniglio, Devid; Motta, Antonella [Department of Industrial Engineering, University of Trento, Trento (Italy); BIOtech Research Center and European Institute of Excellence on Tissue Engineering and Regenerative Medicine, Trento (Italy); Interuniversity Consortium for Science and Technology of Materials, Trento Research Unit, Trento (Italy); Migliaresi, Claudio, E-mail: claudio.migliaresi@unitn.it [Department of Industrial Engineering, University of Trento, Trento (Italy); BIOtech Research Center and European Institute of Excellence on Tissue Engineering and Regenerative Medicine, Trento (Italy); Interuniversity Consortium for Science and Technology of Materials, Trento Research Unit, Trento (Italy)

    2016-02-01

    Silicon plays an important role in bone formation and maintenance, improving osteoblast cell function and inducing mineralization. Often, bone deformation and long bone abnormalities have been associated with silica/silicon deficiency. Diatomite, a natural deposit of diatom skeleton, is a cheap and abundant source of biogenic silica. The aim of the present study is to validate the potential of diatom particles derived from diatom skeletons as silicon-donor materials for bone tissue engineering applications. Raw diatomite (RD) and calcined diatomite (CD) powders were purified by acid treatments, and diatom microparticles (MPs) and nanoparticles (NPs) were produced by fragmentation of purified diatoms under alkaline conditions. The influence of processing on the surface chemical composition of purified diatomites was evaluated by X-ray photoelectron spectroscopy (XPS). Diatoms NPs were also characterized in terms of morphology and size distribution by transmission electron microscopy (TEM) and Dynamic light scattering (DLS), while diatom MPs morphology was analyzed by scanning electron microscopy (SEM). Surface area and microporosity of the diatom particles were evaluated by nitrogen physisorption methods. Release of silicon ions from diatom-derived particles was demonstrated using inductively coupled plasma optical emission spectrometry (ICP/OES); furthermore, silicon release kinetic was found to be influenced by diatomite purification method and particle size. Diatom-derived microparticles (MPs) and nanoparticles (NPs) showed limited or no cytotoxic effect in vitro depending on the administration conditions. - Highlights: • Diatomite is a natural source of silica and has a potential as silicon-donor for bone regenerative applications. • Diatom particles derived from purified diatom skeletons were prepared by fragmentation under extreme alkaline condition. • Dissolution of diatom particles derived from diatom skeletons in DI water depend on purification method

  19. Solar wind stream interfaces

    International Nuclear Information System (INIS)

    Gosling, J.T.; Asbridge, J.R.; Bame, S.J.; Feldman, W.C.

    1978-01-01

    Measurements aboard Imp 6, 7, and 8 reveal that approximately one third of all high-speed solar wind streams observed at 1 AU contain a sharp boundary (of thickness less than approx.4 x 10 4 km) near their leading edge, called a stream interface, which separates plasma of distinctly different properties and origins. Identified as discontinuities across which the density drops abruptly, the proton temperature increases abruptly, and the speed rises, stream interfaces are remarkably similar in character from one stream to the next. A superposed epoch analysis of plasma data has been performed for 23 discontinuous stream interfaces observed during the interval March 1971 through August 1974. Among the results of this analysis are the following: (1) a stream interface separates what was originally thick (i.e., dense) slow gas from what was originally thin (i.e., rare) fast gas; (2) the interface is the site of a discontinuous shear in the solar wind flow in a frame of reference corotating with the sun; (3) stream interfaces occur at speeds less than 450 km s - 1 and close to or at the maximum of the pressure ridge at the leading edges of high-speed streams; (4) a discontinuous rise by approx.40% in electron temperature occurs at the interface; and (5) discontinuous changes (usually rises) in alpha particle abundance and flow speed relative to the protons occur at the interface. Stream interfaces do not generally recur on successive solar rotations, even though the streams in which they are embedded often do. At distances beyond several astronomical units, stream interfaces should be bounded by forward-reverse shock pairs; three of four reverse shocks observed at 1 AU during 1971--1974 were preceded within approx.1 day by stream interfaces. Our observations suggest that many streams close to the sun are bounded on all sides by large radial velocity shears separating rapidly expanding plasma from more slowly expanding plasma

  20. Meiofaunal assemblages associated with native and non-indigenous macroalgae

    Science.gov (United States)

    Veiga, Puri; Sousa-Pinto, Isabel; Rubal, Marcos

    2016-07-01

    Meiofauna is a useful tool to detect effects of different disturbances; however, its relevance in the frame of biological invasions has been almost fully neglected. Meiofaunal assemblages associated with the invasive macroalga Sargassum muticum were studied and compared with those associated with two native macroalgae (Bifurcaria bifurcata and Chondrus crispus). We used a linear mixed model to determine the influence of habitat size (i.e. macroalgal biomass) in shaping meiofaunal assemblages. Results showed that habitat size (i.e. macroalgal biomass) shaped meiofaunal assemblages influencing its abundance, richness and structure. However, the identity of macroalga (i.e. species) appears also to play a significant role, particularly the differences of complexity among the studied species may shape their meiofaunal assemblages. Finally, the invasive macroalga appears to influence positively species richness. Our results highlight the need of including different faunal components to achieve a comprehensive knowledge on effects of invasive macroalgae and that meiofaunal assemblages may be a valuable tool to examine them.

  1. An improved coupled-states approximation including the nearest neighbor Coriolis couplings for diatom-diatom inelastic collision

    Science.gov (United States)

    Yang, Dongzheng; Hu, Xixi; Zhang, Dong H.; Xie, Daiqian

    2018-02-01

    Solving the time-independent close coupling equations of a diatom-diatom inelastic collision system by using the rigorous close-coupling approach is numerically difficult because of its expensive matrix manipulation. The coupled-states approximation decouples the centrifugal matrix by neglecting the important Coriolis couplings completely. In this work, a new approximation method based on the coupled-states approximation is presented and applied to time-independent quantum dynamic calculations. This approach only considers the most important Coriolis coupling with the nearest neighbors and ignores weaker Coriolis couplings with farther K channels. As a result, it reduces the computational costs without a significant loss of accuracy. Numerical tests for para-H2+ortho-H2 and para-H2+HD inelastic collision were carried out and the results showed that the improved method dramatically reduces the errors due to the neglect of the Coriolis couplings in the coupled-states approximation. This strategy should be useful in quantum dynamics of other systems.

  2. Respiration rate of stream insects measured in situ along a large altitude range

    DEFF Research Database (Denmark)

    Rostgaard, S.; Jacobsen, D.

    2005-01-01

    Field studies of respiration in stream insects are few in comparison with laboratory studies. To evaluate the influence of temperature and oxygen along altitudinal gradients we measured the respiration rate of fully acclimatized larval Trichoptera, Plecoptera and Ephemeroptera under similar field...... at 100 and 50% oxygen saturation indicated that highland animals reduced their oxygen uptake more than their counterparts in the lowland when oxygen availability decreased. The temperature response of respiration calculated between the insect assemblages at different altitudes showed a mean assemblage Q...

  3. Effects of local land-use on riparian vegetation, water quality, and the functional organization of macroinvertebrate assemblages.

    Science.gov (United States)

    Fierro, Pablo; Bertrán, Carlos; Tapia, Jaime; Hauenstein, Enrique; Peña-Cortés, Fernando; Vergara, Carolina; Cerna, Cindy; Vargas-Chacoff, Luis

    2017-12-31

    Land-use change is a principal factor affecting riparian vegetation and river biodiversity. In Chile, land-use change has drastically intensified over the last decade, with native forests converted to exotic forest plantations and agricultural land. However, the effects thereof on aquatic ecosystems are not well understood. Closing this knowledge gap first requires understanding how human perturbations affect riparian and stream biota. Identified biological indicators could then be applied to determine the health of fluvial ecosystems. Therefore, this study investigated the effects of land-use change on the health of riparian and aquatic ecosystems by assessing riparian vegetation, water quality, benthic macroinvertebrate assemblages, and functional feeding groups. Twenty-one sites in catchment areas with different land-uses (i.e. pristine forests, native forests, exotic forest plantations, and agricultural land) were selected and sampled during the 2010 to 2012 dry seasons. Riparian vegetation quality was highest in pristine forests. Per the modified Macroinvertebrate Family Biotic Index for Chilean species, the best conditions existed in native forests and the worst in agricultural catchments. Water quality and macroinvertebrate assemblages significantly varied across land-use areas, with forest plantations and agricultural land having high nutrient concentrations, conductivity, suspended solids, and apparent color. Macroinvertebrate assemblage diversity was lowest for agricultural and exotic forest plantation catchments, with notable non-insect representation. Collector-gatherers were the most abundant functional feeding group, suggesting importance independent of land-use. Land-use areas showed no significant differences in functional feeding groups. In conclusion, anthropogenic land-use changes were detectable through riparian quality, water quality, and macroinvertebrate assemblages, but not through functional feeding groups. These data, particularly the

  4. Recent findings regarding non-native or poorly known diatom taxa in north-western Italian rivers

    Directory of Open Access Journals (Sweden)

    Elisa Falasco

    2013-02-01

    Full Text Available Diatoms of the major rivers of North-Western Italy were investigated to highlight the presence of species of particular ecological interest but not as yet recorded. The survey area included streams belonging to seven different hydroecoregions (HERs with a wide range of physical characteristics. Between 2008 and 2010, 200 samples were taken for the study of the diatom community composition, while a larger set of samples was examined to determine the presence or absence of the nuisance diatom species Didymosphenia geminata (Lyngbye Schmidt. A specific field study was performed in two rivers characterized by persistent blooms of this species to evaluate the effects of its proliferation on the benthic communities. D. geminata was present in almost 20% of the samples. From a comparison with published data, we can confirm that D. geminata has recently been expanding its ecological range, as it has been found also in mesotrophic lowlands water. In some instances the formation of massive proliferation has been recorded. The calculation of autecological values confirmed its preference for oligotrophic waters with low mineral content and organic loading, although with a wider ecological amplitude than recorded in the first studies on this species. Another four taxa of particular interest were detected: Achnanthidium subhudsonis (Hustedt Kobayasi (in 15 sites, Cymbella tropica Krammer (11 sites, Mayamaea cahabaensis Morales and Manoylov (2 sites and Reimeria uniseriata Sala, Guerrero and Ferrario (18 sites. The first three species must be considered new records for Northern Italy. A. subhudsonis and C. tropica reached up to 20% relative abundance. From the analysis of their distribution and autecological values, we can assert that A. subhudsonis and M. cahabaensis show a preference for high values of nitrogen, this latter preferring also quite high values of total phosphorus. C. tropica prefers intermediate values of nitrogen nutrients and R. uniseriata is

  5. Fish-assemblage variation between geologically defined regions and across a longitudinal gradient in the Monkey River Basin, Belize

    Science.gov (United States)

    Esselman, P.C.; Freeman, Mary C.; Pringle, C.M.

    2006-01-01

    Linkages between geology and fish assemblages have been inferred in many regions throughout the world, but no studies have yet investigated whether fish assemblages differ across geologies in Mesoamerica. The goals of our study were to: 1) compare physicochemical conditions and fish-assemblage structure across 2 geologic types in headwaters of the Monkey River Basin, Belize, and 2) describe basin-scale patterns in fish community composition and structure for the benefit of conservation efforts. We censused headwater-pool fishes by direct observation, and assessed habitat size, structure, and water chemistry to compare habitat and fish richness, diversity, evenness, and density between streams in the variably metamorphosed sedimentary geologic type typical of 80% of Belize's Maya Mountains (the Santa Rosa Group), and an anomalous extrusive geologic formation in the same area (the Bladen Volcanic Member). We also collected species-presence data from 20 sites throughout the basin for analyses of compositional patterns from the headwaters to the top of the estuary. Thirty-nine fish species in 21 families were observed. Poeciliids were numerically dominant, making up 39% of individuals captured, followed by characins (25%), and cichlids (20%). Cichlidae was the most species-rich family (7 spp.), followed by Poeciliidae (6 spp.). Habitat size and water chemistry differed strongly between geologic types, but habitat diversity did not. Major fish-assemblage differences also were not obvious between geologies, despite a marked difference in the presence of the aquatic macrophyte, Marathrum oxycarpum (Podostemaceae), which covered 37% of the stream bottom in high-nutrient streams draining the Santa Rosa Group, and did not occur in the low-P streams draining the Bladen Volcanic Member. Correlation analyses suggested that distance from the sea and amount of cover within pools are important to fish-assemblage structure, but that differing abiotic factors may influence

  6. Fish distribution and abundance in mediterranean streams:the role of habitat quality, spatial context, and movement patterns

    OpenAIRE

    Pires, Daniel Filipe Carvalho Miranda, 1977-

    2012-01-01

    Tese de doutoramento, Biologia (Ecologia), Universidade de Lisboa, Faculdade de Ciências, 2012 Patterns of fish distribution and abundance in streams are currently thought of as a product of multi-scale factors. Local habitats, spatial relationships and movement are increasingly emerging as drivers of population and assemblage dynamics, though the way in which these factors may interplay remains poorly addressed, particularly in temporary streams. This dissertation addressed the role of mu...

  7. Hierarchical multi-taxa models inform riparian vs. hydrologic restoration of urban streams in a permeable landscape.

    Science.gov (United States)

    Gwinn, Daniel C; Middleton, Jen A; Beesley, Leah; Close, Paul; Quinton, Belinda; Storer, Tim; Davies, Peter M

    2018-03-01

    The degradation of streams caused by urbanization tends to follow predictable patterns; however, there is a growing appreciation for heterogeneity in stream response to urbanization due to the local geoclimatic context. Furthermore, there is building evidence that streams in mildly sloped, permeable landscapes respond uncharacteristically to urban stress calling for a more nuanced approach to restoration. We evaluated the relative influence of local-scale riparian characteristics and catchment-scale imperviousness on the macroinvertebrate assemblages of streams in the flat, permeable urban landscape of Perth, Western Australia. Using a hierarchical multi-taxa model, we predicted the outcomes of stylized stream restoration strategies to increase the riparian integrity at the local scale or decrease the influences of imperviousness at the catchment scale. In the urban streams of Perth, we show that local-scale riparian restoration can influence the structure of macroinvertebrate assemblages to a greater degree than managing the influences of catchment-scale imperviousness. We also observed an interaction between the effect of riparian integrity and imperviousness such that the effect of increased riparian integrity was enhanced at lower levels of catchment imperviousness. This study represents one of few conducted in flat, permeable landscapes and the first aimed at informing urban stream restoration in Perth, adding to the growing appreciation for heterogeneity of the Urban Stream Syndrome and its importance for urban stream restoration. © 2017 by the Ecological Society of America.

  8. What if the Diatoms of the Deep Chlorophyll Maximum Can Ascend?

    Science.gov (United States)

    Villareal, T. A.

    2016-02-01

    Buoyancy regulation is an integral part of diatom ecology via its role in sinking rates and is fundamental to understanding their distribution and abundance. Numerous studies have documented the effects of size and nutrition on sinking rates. Many pelagic diatoms have low intrinsic sinking rates when healthy and nutrient-replete (deep chlorophyll maximum. The potential for ascending behavior adds an additional layer of complexity by allowing both active depth regulation similar to that observed in flagellated taxa and upward transport by some fraction of deep euphotic zone diatom blooms supported by nutrient injection. In this talk, I review the data documenting positive buoyancy in small diatoms, offer direct visual evidence of ascending behavior in common diatoms typical of both oceanic and coastal zones, and note the characteristics of sinking rate distributions within a single species. Buoyancy control leads to bidirectional movement at similar rates across a wide size spectrum of diatoms although the frequency of ascending behavior may be only a small portion of the individual species' abundance. While much remains to be learned, the paradigm of unidirectional downward movement by diatoms is both inaccurate and an oversimplification.

  9. Diatoms dominate the eukaryotic metatranscriptome during spring in coastal 'dead zone' sediments.

    Science.gov (United States)

    Broman, Elias; Sachpazidou, Varvara; Dopson, Mark; Hylander, Samuel

    2017-10-11

    An important characteristic of marine sediments is the oxygen concentration that affects many central metabolic processes. There has been a widespread increase in hypoxia in coastal systems (referred to as 'dead zones') mainly caused by eutrophication. Hence, it is central to understand the metabolism and ecology of eukaryotic life in sediments during changing oxygen conditions. Therefore, we sampled coastal 'dead zone' Baltic Sea sediment during autumn and spring, and analysed the eukaryotic metatranscriptome from field samples and after incubation in the dark under oxic or anoxic conditions. Bacillariophyta (diatoms) dominated the eukaryotic metatranscriptome in spring and were also abundant during autumn. A large fraction of the diatom RNA reads was associated with the photosystems suggesting a constitutive expression in darkness. Microscope observation showed intact diatom cells and these would, if hatched, represent a significant part of the pelagic phytoplankton biomass. Oxygenation did not significantly change the relative proportion of diatoms nor resulted in any major shifts in metabolic 'signatures'. By contrast, diatoms rapidly responded when exposed to light suggesting that light is limiting diatom development in hypoxic sediments. Hence, it is suggested that diatoms in hypoxic sediments are on 'standby' to exploit the environment if they reach suitable habitats. © 2017 The Author(s).

  10. Seasonal and daily fluctuation of diatoms during spring tide periods in Kerkennah Islands

    Directory of Open Access Journals (Sweden)

    Mounir Ben brahim

    2015-06-01

    Full Text Available Objective: To study seasonal and the daily distribution of diatoms in the three tidal periods (flood, slack and ebb period during the spring tide. Methods: Water samples were taken and environmental variables were measured three times in each tidal period during 10 days of spring tide. Sampling was done in 2007 in Cercina station located in the western coast of Kerkennah (34°41'27'' N; 11°07'45'' E (Southern Tunisia. Results: Nutrients showed significant variation between seasons, increasing in spring and decreasing noticeably in autumn and winter. About 36 diatom species were found. Results revealed a remarkable abundance increase in spring and summer. Irregular differences in diatom abundances were revealed over the tidal periods, with the highest rates being detected during the flood and the ebb period, while the abundance rate was lowest during the slack period. This could presumably be attributed to the increase of nutrient supply of suspended particulate matter during water motion. The results revealed a correlation between diatom abundance and temperature, NO2 - , NO3 - , Si(OH4 and PO4 3 . Temperature seemed to be the most important factors which may influence the distribution and diatom abundance. Conclusions: Tide has various effects on the nutrients status and diatoms community (in terms of species composition, succession and abundance between different tidal periods. Fluctuation of diatoms was correlated with changes in the circulation of water bodies and changes in nutrient regime.

  11. Review--Interactions between diatoms and stainless steel: focus on biofouling and biocorrosion.

    Science.gov (United States)

    Landoulsi, J; Cooksey, K E; Dupres, V

    2011-11-01

    There is a considerable body of information regarding bacterially enhanced corrosion, however, this review focuses on diatoms (unicellular algae) whose contribution to biocorrosion is less well studied. The reasons why diatoms have been neglected in studies of biocorrosion in natural waters are discussed and the question whether diatoms should be considered as inert with respect of electrochemical processes is considered. A particular focus is given to the case of stainless steels (SS), which are widely used in variety of applications in natural waters. Basic information on the cell biology of diatoms is included in the review, particularly with respect to their ability to 'sense' and adhere to surfaces. Investigations at the nanoscale are reviewed as these studies provide information about the behavior of cells at interfaces. Recent advances include the use of atomic force microscopy (AFM), although only a few studies have been applied to diatoms. Regarding the electrochemical behavior of SS, the mechanisms by which diatoms influence the potential ennoblement process is discussed. Such studies reveal the association of diatoms, in addition to bacteria, with biocorrosion processes.

  12. Architecture and material properties of diatom shells provide effective mechanical protection

    Science.gov (United States)

    Hamm, Christian E.; Merkel, Rudolf; Springer, Olaf; Jurkojc, Piotr; Maier, Christian; Prechtel, Kathrin; Smetacek, Victor

    2003-02-01

    Diatoms are the major contributors to phytoplankton blooms in lakes and in the sea and hence are central in aquatic ecosystems and the global carbon cycle. All free-living diatoms differ from other phytoplankton groups in having silicified cell walls in the form of two `shells' (the frustule) of manifold shape and intricate architecture whose function and role, if any, in contributing to the evolutionary success of diatoms is under debate. We explored the defence potential of the frustules as armour against predators by measuring their strength. Real and virtual loading tests (using calibrated glass microneedles and finite element analysis) were performed on centric and pennate diatom cells. Here we show that the frustules are remarkably strong by virtue of their architecture and the material properties of the diatom silica. We conclude that diatom frustules have evolved as mechanical protection for the cells because exceptional force is required to break them. The evolutionary arms race between diatoms and their specialized predators will have had considerable influence in structuring pelagic food webs and biogeochemical cycles.

  13. Investigation of the hydrodynamic behavior of diatom aggregates using particle image velocimetry.

    Science.gov (United States)

    Xiao, Feng; Li, Xiaoyan; Lam, Kitming; Wang, Dongsheng

    2012-01-01

    The hydrodynamic behavior of diatom aggregates has a significant influence on the interactions and flocculation kinetics of algae. However, characterization of the hydrodynamics of diatoms and diatom aggregates in water is rather difficult. In this laboratory study, an advanced visualization technique in particle image velocimetry (PIV) was employed to investigate the hydrodynamic properties of settling diatom aggregates. The experiments were conducted in a settling column filled with a suspension of fluorescent polymeric beads as seed tracers. A laser light sheet was generated by the PIV setup to illuminate a thin vertical planar region in the settling column, while the motions of particles were recorded by a high speed charge-coupled device (CCD) camera. This technique was able to capture the trajectories of the tracers when a diatom aggregate settled through the tracer suspension. The PIV results indicated directly the curvilinear feature of the streamlines around diatom aggregates. The rectilinear collision model largely overestimated the collision areas of the settling particles. Algae aggregates appeared to be highly porous and fractal, which allowed streamlines to penetrate into the aggregate interior. The diatom aggregates have a fluid collection efficiency of 10%-40%. The permeable feature of aggregates can significantly enhance the collisions and flocculation between the aggregates and other small particles including algal cells in water.

  14. Inventory of miscellaneous streams

    International Nuclear Information System (INIS)

    Lueck, K.J.

    1995-09-01

    On December 23, 1991, the US Department of Energy, Richland Operations Office (RL) and the Washington State Department of Ecology (Ecology) agreed to adhere to the provisions of the Department of Ecology Consent Order. The Consent Order lists the regulatory milestones for liquid effluent streams at the Hanford Site to comply with the permitting requirements of Washington Administrative Code. The RL provided the US Congress a Plan and Schedule to discontinue disposal of contaminated liquid effluent into the soil column on the Hanford Site. The plan and schedule document contained a strategy for the implementation of alternative treatment and disposal systems. This strategy included prioritizing the streams into two phases. The Phase 1 streams were considered to be higher priority than the Phase 2 streams. The actions recommended for the Phase 1 and 2 streams in the two reports were incorporated in the Hanford Federal Facility Agreement and Consent Order. Miscellaneous Streams are those liquid effluents streams identified within the Consent Order that are discharged to the ground but are not categorized as Phase 1 or Phase 2 Streams. This document consists of an inventory of the liquid effluent streams being discharged into the Hanford soil column

  15. Hydrography - Streams and Shorelines

    Data.gov (United States)

    California Natural Resource Agency — The hydrography layer consists of flowing waters (rivers and streams), standing waters (lakes and ponds), and wetlands -- both natural and manmade. Two separate...

  16. Diatom Transcriptional and Physiological Responses to Changes in Iron Bioavailability across Ocean Provinces

    Directory of Open Access Journals (Sweden)

    Natalie R. Cohen

    2017-11-01

    Full Text Available Changes in iron (Fe bioavailability influence diatom physiology and community composition, and thus have a profound impact on primary productivity and ecosystem dynamics. Iron limitation of diatom growth rates has been demonstrated in both oceanic and coastal waters of the Northeast Pacific Ocean and is predicted to become more pervasive in future oceans. However, it is unclear how the strategies utilized by phytoplankton to cope with low Fe bioavailability and resupply differ across these ocean provinces. We investigated the response of diatom communities to variable Fe conditions through incubation experiments performed in the Fe mosaic of the California Upwelling Zone and along a natural Fe gradient in the Northeast Pacific Ocean. Through coupling gene expression of two dominant diatom taxa (Pseudo-nitzschia and Thalassiosira with biological rate process measurements, we provide an in-depth examination of the physiological and molecular responses associated with varying Fe status. Following Fe enrichment, oceanic diatoms showed distinct differential expression of gene products involved in nitrogen assimilation, photosynthetic carbon fixation, and vitamin production compared to diatoms from low-Fe coastal sites, possibly driven by the chronic nature of Fe stress at the oceanic site. Genes of interest involved in Fe and N metabolism additionally exhibited divergent expression patterns between the two diatom taxa investigated, demonstrating that diverse diatoms may invoke alternative strategies when dealing with identical changes in their environment. We report here several mechanisms used distinctly by coastal or oceanic diatom communities as well as numerous taxa-specific strategies for coping with Fe stress and rearranging nutrient metabolism following Fe enrichment.

  17. Diatoms as an indicator for tile drainage flow in a German lowland catchment.

    Science.gov (United States)

    Wu, Naicheng; Faber, Claas; Ulrich, Uta; Fohrer, Nicola

    2018-01-01

    The separation of runoff components within a model simulation is of great importance for a successful implementation of management measures. Diatoms could be a promising indicator for tile drainage flow due to their diverse preferences to different aquatic habitats. In this study, we collected diatom samples of 9 sites (4 tile drainage, TD, and 5 river sites, Ri) in a German lowland catchment at a weekly or biweekly time step from March to July 2013 with the aim of testing the suitability of diatoms for tile drainage flow, which is typical for lowland catchment. Planothidium lanceolatum , Ulnaria biceps , and Navicula gregaria dominated in TD sites with relative abundances of 22.2, 21.5, and 10.9%, respectively. For Ri sites, the most abundant species was Navicula lanceolata (20.5%), followed by Ulnaria biceps (12.9%), Cyclotella meneghiniana (9.5%), and Planothidium lanceolatum (9.3%). Compared with Ri sites, TD had a lower diatom density, biomass, species richness, and percentage of Aquatic/Riparian diatoms (AqRi%). However, the proportion of Riparian diatoms (RiZo%) increased at TD. Indicator value method (IndVal) revealed that the two groups (Ri and TD) were characterized by different indicator species. Fifteen taxa, including Cocconeis placentula , Cyclotella meneghiniana , N. lanceolata , and U. biceps , were significant indicators for Ri sites. Planothidium lanceolatum , Achnanthidium minutissimum , and Navicula gregaria were significant indicators for TD sites. A pronounced variation was found in the species lists of diatom community between Ri and TD water body types associated with different indicator species. With respect to hydrograph separation, these findings highlight the suitability of diatoms as an indicator for tile drainage flow. However, spatial and temporal variations of diatoms should be considered in future surveys.

  18. No correlation between the diversity and productivity of assemblages: evidence from the phytophage and predator assemblages in various cotton agroecosystems.

    Science.gov (United States)

    Gao, Feng; Men, XingYuan; Ge, Feng

    2014-09-01

    Biodiversity research has shown that primary productivity increases with plant species number, especially in many experimental grassland systems. Here, we assessed the correlation between productivity and diversity of phytophages and natural enemy assemblages associated with planting date and intercropping in four cotton agroecosystems. Twenty-one pairs of data were used to determine Pearson correlations between species richness, total number of individuals, diversity indices and productivity for each assemblage every five days from 5 June to 15 September 2012. At the same trophic level, the productivity exhibited a significant positive correlation with species richness of the phytophage or predator assemblage. A significant correlation was found between productivity and total number of individuals in most cotton fields. However, no significant correlations were observed between productivity and diversity indices (including indices of energy flow diversity and numerical diversity) in most cotton fields for either the phytophage or the predator assemblages. Species richness of phytophage assemblage and total individual numbers were significantly correlated with primary productivity. Also, species richness of natural enemy assemblage and total number of individuals correlated with phytophage assemblage productivity. A negative but not significant correlation occurred between the indices of numerical diversity and energy flow diversity and lower trophic-level productivity in the cotton-phytophage and phytophage-predator assemblages for most intercropped cotton agroecosystems. Our results clearly showed that there were no correlations between diversity indices and productivity within the same or lower trophic levels within the phytophage and predator assemblages in cotton agroecosystems, and inter-cropped cotton fields had a stronger ability to support the natural enemy assemblage and potentially to reduce phytophages.

  19. Diatom-inferred hydrological changes and Holocene geomorphic transitioning of Africa's largest estuarine system, Lake St Lucia

    Science.gov (United States)

    Gomes, M.; Humphries, M. S.; Kirsten, K. L.; Green, A. N.; Finch, J. M.; de Lecea, A. M.

    2017-06-01

    The diverse lagoons and coastal lakes along the east coast of South Africa occupy incised valleys that were flooded during the rise and subsequent stabilisation of relative sea-level during the Holocene. Sedimentary deposits contained within these waterbodies provide an opportunity to investigate complex hydrological and sedimentological processes, and examine sea-level controls governing system geomorphic evolution. In this paper, we combine diatom and sulfur isotope analyses from two sediment cores extracted from the northern sub-basins of Lake St Lucia, a large shallow estuarine lake that is today largely isolated from direct ocean influence behind a Holocene-Pleistocene barrier complex. Analyses allow the reconstruction of hydrological changes associated with the geomorphic development of the system over the mid-to late Holocene. The sedimentary sequences indicate that St Lucia was a shallow, partially enclosed estuary/embayment dominated by strong tidal flows prior to ∼6200 cal. BP. Infilling was initiated when sea-level rise slowed and stabilised around present day levels, resulting in the accumulation of fine-grained sediment behind an emergent proto-barrier. Diatom assemblages, dominated by marine benthic and epiphytic species, reveal a system structured by marine water influx and characterised by marsh and tidal flat habitats until ∼4550 cal. BP. A shift in the biological community at ∼4550 cal. BP is linked to the development of a back-barrier water body that supported a brackish community. Marine planktonics and enrichments in δ34S suggest recurrent, large-scale barrier inundation events during this time, coincident with a mid-Holocene sea-level highstand. Periodic marine incursions associated with episodes of enhanced storminess and overwash remained prevalent until ∼1200 cal. BP, when further barrier construction ultimately isolated the northern basins from the ocean. This study provides the first reconstruction of the palaeohydrological

  20. Spatial variability in macroinvertebrate assemblages along and among neighbouring equatorial glacier-fed streams

    DEFF Research Database (Denmark)

    Kuhn, J.; Andino, P.; Calvez, R.

    2011-01-01

    , the three sites were placed at comparable distances from the glacier and were grouped as ‘upper’ (50–200 m), ‘middle’ (1.5 km) and ‘lower’ sites (3.5–5.6 km). 3. In total, 2200 individuals (64% chironomids) were collected and 47 taxa (30 dipterans, 18 of these Chironomidae) identified. Density ranged from...

  1. An emergent multiple predator effect may enhance biotic resistance in a stream fish assemblage

    Science.gov (United States)

    Bret C. Harvey; Jason L. White; Rodney J. Nakamoto

    2004-01-01

    While two cyprinid fishes introduced from nearby drainages have become widespread and abundant in the Eel River of northwestern California, a third nonindigenous cyprinid has remained largely confined to <25 km of one major tributary (the Van Duzen River) for at least 15 years. The downstream limit of this species, speckled dace, does not appear to correspond...

  2. Composition and structure of aquatic insect assemblages of Yungas mountain cloud forest streams in NW Argentina

    Directory of Open Access Journals (Sweden)

    Natalia VON ELLENRIEDER

    2007-01-01

    Full Text Available Treinta y tres ambientes lóticos en las selvas nubladas de montaña de las Yungas del NO Argentino, fueron muestreados tanto en ambientes no modificados como alterados por actividades humanas. Insectos acuáticos de 143 taxones en 55 familias fueron colectados. El análisis de agrupamientos sugirió que la altura es una de las variables principales en la estructuración de las comunidades de insectos en estos arroyos, y la importancia de esta variable fue confirmada mediante un ordenamiento no-métrico multi-dimensional (NMS; los parámetros ambientales que mejor se correlacionaron con la ordenación fueron: altura, temperatura del agua, latitud y variables del canal (ancho, porcentaje de detritos leñosos grandes y pequeños, de bancos excavados, de piedras y grava gruesa. Procedimientos de permutación de respuestas múltiples (MRPP, mostraron que los arroyos en áreas bien conservadas difieren significativamente en su composición de los arroyos en áreas modificadas. La proporción de individuos de Elmidae y Plecoptera, y el número de taxones de Trichoptera, fueron los métricos biológicos mejor correlacionados con el gradiente de alteración ambiental local, sugiriendo que un índice ‘ElPT’ podría ser un componente útil para la evaluación del estado ecológico de estos ambientes. Los análisis de indicadores de especies, identificaron algunos indicadores potenciales de la condición de los arroyos y de los factores de alteración que los afectan.

  3. Limits to gene flow in a cosmopolitan marine planktonic diatom.

    Science.gov (United States)

    Casteleyn, Griet; Leliaert, Frederik; Backeljau, Thierry; Debeer, Ann-Eline; Kotaki, Yuichi; Rhodes, Lesley; Lundholm, Nina; Sabbe, Koen; Vyverman, Wim

    2010-07-20

    The role of geographic isolation in marine microbial speciation is hotly debated because of the high dispersal potential and large population sizes of planktonic microorganisms and the apparent lack of strong dispersal barriers in the open sea. Here, we show that gene flow between distant populations of the globally distributed, bloom-forming diatom species Pseudo-nitzschia pungens (clade I) is limited and follows a strong isolation by distance pattern. Furthermore, phylogenetic analysis implies that under appropriate geographic and environmental circumstances, like the pronounced climatic changes in the Pleistocene, population structuring may lead to speciation and hence may play an important role in diversification of marine planktonic microorganisms. A better understanding of the factors that control population structuring is thus essential to reveal the role of allopatric speciation in marine microorganisms.

  4. Sorption of 237Pu by the diatom Asterionella formosa

    International Nuclear Information System (INIS)

    Conway, H.L.; Wahlgren, M.A.; Peterson, N.; Nelson, D.M.

    1976-01-01

    Knowledge of the behavior of the man-made radionuclide plutonium within aquatic environments is of fundamental importance in assessing its potential hazards and ecological impact. The sorption of plutonium by phytoplankton and other algae is the dominant factor in the biological transport of plutonium in the aquatic environment, and it has been suggested that sorption by phytoplankton may be responsible for the seasonal loss of plutonium from the epilimnion of Lake Michigan. A unialgal diatom culture was spiked with 237 Pu tracer solution in an attempt to simulate the behavior of fallout plutonium observed in field studies. The results were encouraging in that the 237 Pu in the filtered lake water medium exhibited strongly anionic properties similar to fallout plutonium in Lake Michigan, with limited sorption on container walls. The purpose of the present study was to extend the investigations of the sorption of plutonium by phytoplankton in a controlled environment using continuous culture techniques

  5. TRIGLYCERIDE COMPOSITION OF SIXTEEN STRAINS OF MARINE DIATOM

    Directory of Open Access Journals (Sweden)

    Lily M.G. Panggabean

    2013-07-01

    Full Text Available Trigliceride or triacylglicerol (TAG composition in crude oil of sixteen strain of marine diatom has been detected by spectra analyses on an Electrospray - Ion Trap – Mass Spectrometry (ESI-IT-MS HCT Bruker-Daltonic GmbH instrument with AgNO3 used as coordination ionization agent. Biomass samples of each microalga strain were taken from early and late stationary cultures in f/2 enriched seawater and algal oils were extracted according to Bligh and Dyer. Results from spectra analysis showed that P-Pt-P (C16:0-C16:1-C16:0 were distinguished in TAG from diatom strains Chaetoceros sp.1, Chaetoceros sp.2, Thalasiossira sp.1, Thalasiossira sp.2, Thalasiossira sp.3, Navicula sp. 1, Navicula sp. 2, Navicula sp. 3, Navicula sp. 4, Nitzschia sp. 2 and Amphora sp. In contrast, TAGs in Melosira sp. included P-P-P (C16:0-C16:0-C16:0 and P-P-O (C16:0-C16:0-C18:1 were identified. TAGs from Chaetoceros sp. were the most varies among samples, i.e. P-Pt-P (C16:0-C16:1-C16:0, A-P-M (C20:4-C16:0-C14:0, P-Pt-Lt (C16:0-C16:1-C18:3, P-Pt-A (C16:0-C16:1-C20:4, D-P-P (C22:6-C16:0-C16:0, A-Ln-P (C20:4-C18:2-C16:0. Various TAGs were also detected in Nitzschia sp.2, i.e. P-Pt-M (C16:0-C16:1-C14:0, P-Pt-P (C16:0-C16:1-C16:0, P-Pt-S (C16:0-C16:1-C18:0, P-Pt-A (C16:0-C16:1-C20:4. TAGs composition in Skeletonema strains that similar to those in Nitzschia sp.1 has longer carbon, i.e. P-P-O (C16:0-C16:0-C18:1, P-O-O (C16:0-C18:1-C18:1 and O-O-O (C18:1-C18:1-C18:1. TAGs with longer carbon chain and more double bond including highly unsaturated fatty acid C20:4 were increased with culture age in diatoms Chaetoceros sp.1, Chaetoceros sp.2, Thalasiossira sp.2, Navicula sp.1 and Nitzschia sp. 2.Keywords: diatom, TAG, ESI-IT-MS, f/2, early and late stationary

  6. Quantum work distribution for a driven diatomic molecule

    International Nuclear Information System (INIS)

    Leonard, Alison; Deffner, Sebastian

    2015-01-01

    Highlights: • A method for calculating the time-dependent solution for a driven system is proposed. • These solutions are used to compute the quantum work distribution. • This distribution is calculated for the Morse potential mimicking a diatomic molecule. • Due to bound and scattering states distribution exhibits continuous and discrete part. • Result is compared with that of a harmonic approximation. - Abstract: We compute the quantum work distribution for a driven Morse oscillator. To this end, we solve the time-dependent dynamics for a scale-invariant process, from which the exact expressions for the transition probabilities are found. Special emphasis is put on the contributions to the work distribution from discrete (bound) and continuous (scattering) parts of the spectrum. The analysis is concluded by comparing the work distribution for the exact Morse potential and the one resulting from a harmonic approximation

  7. Sedimentation of phytoplankton during a diatom bloom : Rates and mechanisms

    DEFF Research Database (Denmark)

    Kiørboe, Thomas; Hansen, J.L.S.; Alldredge, A.L.

    1996-01-01

    Phytoplankton blooms are uncoupled from grazing and are normally terminated by sedimentation. There are several potential mechanisms by which phytoplankton cells may settle out of the photic zone: sinking of individual cells or chains, coagulation of cells into aggregates with high settling...... velocities, settling of cells attached to marine snow aggregates formed from discarded larvacean houses or pteropod feeding webs, and packaging of cells into rapidly falling zooplankton fecal pellets. We quantified the relative significance of these different mechanisms during a diatom bloom in a temperate...... to marine snow aggregates formed from discarded larvacean houses, whereas settling of unaggregated cells was insignificant. Formation rates of phytoplankton aggregates by physical coagulation was very low, and losses by this mechanism were much less than 0.07 d(-1); phytoplankton aggregates were neither...

  8. Shedding light on diatom photonics by means of digital holography.

    Science.gov (United States)

    Di Caprio, Giuseppe; Coppola, Giuseppe; De Stefano, Luca; De Stefano, Mario; Antonucci, Alessandra; Congestri, Roberta; De Tommasi, Edoardo

    2014-05-01

    Diatoms are among the dominant phytoplankters in the world's oceans, and their external silica investments, resembling artificial photonic crystals, are expected to play an active role in light manipulation. Digital holography allowed studying the interaction with light of Coscinodiscus wailesii cell wall reconstructing the light confinement inside the cell cytoplasm, condition that is hardly accessible via standard microscopy. The full characterization of the propagated beam, in terms of quantitative phase and intensity, removed a long-standing ambiguity about the origin of the light confinement. The data were discussed in the light of living cell behavior in response to their environment. Copyright © 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  9. Nonlinear quantum dynamics in diatomic molecules: Vibration, rotation and spin

    International Nuclear Information System (INIS)

    Yang, Ciann-Dong; Weng, Hung-Jen

    2012-01-01

    Highlights: ► This paper reveals the internal nonlinear dynamics embedded in a molecular quantum state. ► Analyze quantum molecular dynamics in a deterministic way, while preserving the consistency with probability interpretation. ► Molecular vibration–rotation interaction and spin–orbital coupling are considered simultaneously. ► Spin is just the remnant angular motion when orbital angular momentum is zero. ► Spin is the “zero dynamics” of nonlinear quantum dynamics. - Abstract: For a given molecular wavefunction Ψ, the probability density function Ψ ∗ Ψ is not the only information that can be extracted from Ψ. We point out in this paper that nonlinear quantum dynamics of a diatomic molecule, completely consistent with the probability prediction of quantum mechanics, does exist and can be derived from the quantum Hamilton equations of motion determined by Ψ. It can be said that the probability density function Ψ ∗ Ψ is an external representation of the quantum state Ψ, while the related Hamilton dynamics is an internal representation of Ψ, which reveals the internal mechanism underlying the externally observed random events. The proposed internal representation of Ψ establishes a bridge between nonlinear dynamics and quantum mechanics, which allows the methods and tools already developed by the former to be applied to the latter. Based on the quantum Hamilton equations of motion derived from Ψ, vibration, rotation and spin motions of a diatomic molecule and the interactions between them can be analyzed simultaneously. The resulting dynamic analysis of molecular motion is compared with the conventional probability analysis and the consistency between them is demonstrated.

  10. Structure-based optics of centric diatom frustules: modulation of the in vivo light field for efficient diatom photosynthesis.

    Science.gov (United States)

    Goessling, Johannes W; Su, Yanyan; Cartaxana, Paulo; Maibohm, Christian; Rickelt, Lars F; Trampe, Erik C L; Walby, Sandra L; Wangpraseurt, Daniel; Wu, Xia; Ellegaard, Marianne; Kühl, Michael

    2018-07-01

    The optical properties of diatom silicate frustules inspire photonics and nanotechnology research. Whether light interaction with the nano-structure of the frustule also affects diatom photosynthesis has remained unclear due to lack of information on frustule optical properties under more natural conditions. Here we demonstrate that the optical properties of the frustule valves in water affect light harvesting and photosynthesis in live cells of centric diatoms (Coscinodiscus granii). Microscale cellular mapping of photosynthesis around localized spot illumination demonstrated optical coupling of chloroplasts to the valve wall. Photonic structures of the three-layered C. granii valve facilitated light redistribution and efficient photosynthesis in cell regions distant from the directly illuminated area. The different porous structure of the two sides of the valve exhibited photon trapping and forward scattering of blue light enhancing photosynthetic active radiation inside the cell. Photonic structures of diatom frustules thus alter the cellular light field with implications on diatom photobiology. © 2018 The Authors. New Phytologist © 2018 New Phytologist Trust.

  11. Modelling stream-fish functional traits in reference conditions: regional and local environmental correlates.

    Directory of Open Access Journals (Sweden)

    João M Oliveira

    Full Text Available Identifying the environmental gradients that control the functional structure of biological assemblages in reference conditions is fundamental to help river management and predict the consequences of anthropogenic stressors. Fish metrics (density of ecological guilds, and species richness from 117 least disturbed stream reaches in several western Iberia river basins were modelled with generalized linear models in order to investigate the importance of regional- and local-scale abiotic gradients to variation in functional structure of fish assemblages. Functional patterns were primarily associated with regional features, such as catchment elevation and slope, rainfall, and drainage area. Spatial variations of fish guilds were thus associated with broad geographic gradients, showing (1 pronounced latitudinal patterns, affected mainly by climatic factors and topography, or (2 at the basin level, strong upstream-downstream patterns related to stream position in the longitudinal gradient. Maximum native species richness was observed in midsize streams in accordance with the river continuum concept. The findings of our study emphasized the need to use a multi-scale approach in order to fully assess the factors that govern the functional organization of biotic assemblages in 'natural' streams, as well as to improve biomonitoring and restoration of fluvial ecosystems.

  12. Genetic diversity and species diversity of stream fishes covary across a land-use gradient

    Science.gov (United States)

    Blum, M.J.; Bagley, M.J.; Walters, D.M.; Jackson, S.A.; Daniel, F.B.; Chaloud, D.J.; Cade, B.S.

    2012-01-01

    Genetic diversity and species diversity are expected to covary according to area and isolation, but may not always covary with environmental heterogeneity. In this study, we examined how patterns of genetic and species diversity in stream fishes correspond to local and regional environmental conditions. To do so, we compared population size, genetic diversity and divergence in central stonerollers (Campostoma anomalum) to measures of species diversity and turnover in stream fish assemblages among similarly sized watersheds across an agriculture-forest land-use gradient in the Little Miami River basin (Ohio, USA). Significant correlations were found in many, but not all, pair-wise comparisons. Allelic richness and species richness were strongly correlated, for example, but diversity measures based on allele frequencies and assemblage structure were not. In-stream conditions related to agricultural land use were identified as significant predictors of genetic diversity and species diversity. Comparisons to population size indicate, however, that genetic diversity and species diversity are not necessarily independent and that variation also corresponds to watershed location and glaciation history in the drainage basin. Our findings demonstrate that genetic diversity and species diversity can covary in stream fish assemblages, and illustrate the potential importance of scaling observations to capture responses to hierarchical environmental variation. More comparisons according to life history variation could further improve understanding of conditions that give rise to parallel variation in genetic diversity and species diversity, which in turn could improve diagnosis of anthropogenic influences on aquatic ecosystems. ?? 2011 Springer-Verlag.

  13. Concurrent assessment of fish and habitat in warmwater streams in Wyoming

    Science.gov (United States)

    Quist, M.C.; Hubert, W.A.; Rahel, F.J.

    2006-01-01

    Fisheries research and management in North America have focused largely on sport fishes, but native non-game fishes have attracted increased attention due to their declines. The Warmwater Stream Assessment (WSA) was developed to evaluate simultaneously both fish and habitat in Wyoming streams by a process that includes three major components: (1) stream-reach selection and accumulation of existing information, (2) fish and habitat sampling and (3) summarisation and evaluation of fish and habitat information. Fish are sampled by electric fishing or seining and habitat is measured at reach and channel-unit (i.e. pool, run, riffle, side channel, or backwater) scales. Fish and habitat data are subsequently summarised using a data-matrix approach. Hierarchical decision trees are used to assess critical habitat requirements for each fish species expected or found in the reach. Combined measurements of available habitat and the ecology of individual species contribute to the evaluation of the observed fish assemblage. The WSA incorporates knowledge of the fish assemblage and habitat features to enable inferences of factors likely influencing both the fish assemblage and their habitat. The WSA was developed for warmwater streams in Wyoming, but its philosophy, process and conceptual basis may be applied to environmental assessments in other geographical areas. ?? 2006 Blackwell Publishing Ltd.

  14. Accounting for regional variation in both natural environment and human disturbance to improve performance of multimetric indices of lotic benthic diatoms.

    Science.gov (United States)

    Tang, Tao; Stevenson, R Jan; Infante, Dana M

    2016-10-15

    Regional variation in both natural environment and human disturbance can influence performance of ecological assessments. In this study we calculated 5 types of benthic diatom multimetric indices (MMIs) with 3 different approaches to account for variation in ecological assessments. We used: site groups defined by ecoregions or diatom typologies; the same or different sets of metrics among site groups; and unmodeled or modeled MMIs, where models accounted for natural variation in metrics within site groups by calculating an expected reference condition for each metric and each site. We used data from the USEPA's National Rivers and Streams Assessment to calculate the MMIs and evaluate changes in MMI performance. MMI performance was evaluated with indices of precision, bias, responsiveness, sensitivity and relevancy which were respectively measured as MMI variation among reference sites, effects of natural variables on MMIs, difference between MMIs at reference and highly disturbed sites, percent of highly disturbed sites properly classified, and relation of MMIs to human disturbance and stressors. All 5 types of MMIs showed considerable discrimination ability. Using different metrics among ecoregions sometimes reduced precision, but it consistently increased responsiveness, sensitivity, and relevancy. Site specific metric modeling reduced bias and increased responsiveness. Combined use of different metrics among site groups and site specific modeling significantly improved MMI performance irrespective of site grouping approach. Compared to ecoregion site classification, grouping sites based on diatom typologies improved precision, but did not improve overall performance of MMIs if we accounted for natural variation in metrics with site specific models. We conclude that using different metrics among ecoregions and site specific metric modeling improve MMI performance, particularly when used together. Applications of these MMI approaches in ecological assessments

  15. Global assemblages and structural models of International Relations

    DEFF Research Database (Denmark)

    Corry, Olaf

    2014-01-01

    -category of assemblages – those constructed as malleable and governable which I call ‘governance-objects’ – is central to structure in international relations. The chapter begins with standard definitions of what structures are – patterns of interaction between elements – and briefly covers the range of models currently...... used to simplify different structures. Next the chapter points to the blindness of most structural theories of IR to the role of assemblages in general and governance-objects in particular. Thirdly, the idea that a polity is constituted precisely by the assemblage of a governance...

  16. LHCb trigger streams optimization

    Science.gov (United States)

    Derkach, D.; Kazeev, N.; Neychev, R.; Panin, A.; Trofimov, I.; Ustyuzhanin, A.; Vesterinen, M.

    2017-10-01

    The LHCb experiment stores around 1011 collision events per year. A typical physics analysis deals with a final sample of up to 107 events. Event preselection algorithms (lines) are used for data reduction. Since the data are stored in a format that requires sequential access, the lines are grouped into several output file streams, in order to increase the efficiency of user analysis jobs that read these data. The scheme efficiency heavily depends on the stream composition. By putting similar lines together and balancing the stream sizes it is possible to reduce the overhead. We present a method for finding an optimal stream composition. The method is applied to a part of the LHCb data (Turbo stream) on the stage where it is prepared for user physics analysis. This results in an expected improvement of 15% in the speed of user analysis jobs, and will be applied on data to be recorded in 2017.

  17. Asteroid/meteorite streams

    Science.gov (United States)

    Drummond, J.

    The independent discovery of the same three streams (named alpha, beta, and gamma) among 139 Earth approaching asteroids and among 89 meteorite producing fireballs presents the possibility of matching specific meteorites to specific asteroids, or at least to asteroids in the same stream and, therefore, presumably of the same composition. Although perhaps of limited practical value, the three meteorites with known orbits are all ordinary chondrites. To identify, in general, the taxonomic type of the parent asteroid, however, would be of great scientific interest since these most abundant meteorite types cannot be unambiguously spectrally matched to an asteroid type. The H5 Pribram meteorite and asteroid 4486 (unclassified) are not part of a stream, but travel in fairly similar orbits. The LL5 Innisfree meteorite is orbitally similar to asteroid 1989DA (unclassified), and both are members of a fourth stream (delta) defined by five meteorite-dropping fireballs and this one asteroid. The H5 Lost City meteorite is orbitally similar to 1980AA (S type), which is a member of stream gamma defined by four asteroids and four fireballs. Another asteroid in this stream is classified as an S type, another is QU, and the fourth is unclassified. This stream suggests that ordinary chondrites should be associated with S (and/or Q) asteroids. Two of the known four V type asteroids belong to another stream, beta, defined by five asteroids and four meteorite-dropping (but unrecovered) fireballs, making it the most probable source of the eucrites. The final stream, alpha, defined by five asteroids and three fireballs is of unknown composition since no meteorites have been recovered and only one asteroid has an ambiguous classification of QRS. If this stream, or any other as yet undiscovered ones, were found to be composed of a more practical material (e.g., water or metalrich), then recovery of the associated meteorites would provide an opportunity for in-hand analysis of a potential

  18. Influence of Pools and Riffles on Chironomidae Diversity in Headwater Streams of the Atlantic Forest.

    Science.gov (United States)

    Silveira, L S; Rosa, B F J V; Gonçalves, E A; Alves, R G

    2015-10-01

    Studies on mesohabitat scale have been used to shed light on the ecology and distribution of chironomid larvae in small streams. Thus, the objective of the present study was to examine the diversity and distribution of the Chironomidae assemblage on the mesohabitat scale in three streams located in different preserved areas of southeastern Brazil. In each stream, litter samples were obtained in the dry season of 2010 in ten pools and ten riffles with a Surber sampler (area 0.04 m(2); mesh size 0.21 mm). The abundance was similar among streams and between mesohabitats, while the estimated richness was highest in riffles. There was a difference in the composition of the Chironomidae assemblages between the mesohabitats, although the litter composition was similar between them, indicating the importance of current speed on the distribution of the taxa. The dispersion of the sample units (β-diversity) of riffles and pools was similar, although it was different among the three streams. The results of this study provide further evidence of the importance of habitat heterogeneity within streams as a generator of diversity for Chironomidae in tropical lotic systems.

  19. Depauperate macroinvertebrates in a mine affected stream: Clean water may be the key to recovery

    International Nuclear Information System (INIS)

    Battaglia, M.; Hose, G.C.; Turak, E.; Warden, B.

    2005-01-01

    Acid mine drainage (AMD) is frequently linked with changes in macroinvertebrate assemblages, but the relative contribution of water and sediment to toxicity is equivocal. We have shown that the macroinvertebrate fauna of Neubecks Ck, a mine impacted stream in New South Wales, Australia, was much poorer than in two reference streams. Multivariate RELATE analyses indicated that the patterns in the biological data were more strongly correlated with the concentrations of common metals in the surface water than the pore water of these streams. From this we hypothesised that the water was more toxic to the biota than the sediment and we tested this hypothesis with a sediment transplant experiment. Sediment from Neubecks Ck that was placed in reference streams retained high concentrations of metals throughout the experiment, yet supported a macroinvertebrate assemblage similar to that in the reference streams. Sediment from the reference streams that was placed in Neubecks Ck supported few, if any, animals. This indicates that water in Neubecks Ck is toxic to biota, but that sediment is able to support aquatic biota in clean water. Therefore, remediation should focus on improving water quality rather than sediment quality. - Macroinvertebrates colonise contaminated sediment in clean water

  20. Epiphytic diatoms in lotic and lentic waters - diversity and representation of species complexes

    Czech Academy of Sciences Publication Activity Database

    Kollár, J.; Fránková, Markéta; Hašler, P.; Letáková, M.; Poulíčková, A.

    2015-01-01

    Roč. 15, č. 2 (2015), s. 259-271 ISSN 1802-5439 Institutional support: RVO:67985939 Keywords : diatoms * epiphyton * species comlexes * lotic and lentic waters Subject RIV: EF - Botanics Impact factor: 2.026, year: 2015