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Sample records for stream community metabolism

  1. Soil Microbial Community Contribution to Small Headwater Stream Metabolism.

    Science.gov (United States)

    Clapcott, J. E.; Gooderham, J. P.; Barmuta, L. A.; Davies, P. E.

    2005-05-01

    The temporal dynamics of sediment respiration were examined in seven small headwater streams in forested catchments in 2004. A strong seasonal response was observed with higher respiration rates in depositional zones than in gravel runs. The data were also examined in the context of proportional habitat distributions that highlighted the importance of high flow events in shaping whole stream metabolic budgets. This study specifically examines the question of terrestrial soil respiration contribution to whole stream metabolism by the controlled inundation of terrestrial soils. The experiment included six experimentally inundated terrestrial zones, six terrestrial controls, and six in-stream depositional zones. Sediment bacterial respiration was measured using 14C leucine incorporation and cotton strip bioassays were also employed to provide an indicative measure of sediment microbial activity. Despite high variability and exhibiting significantly lower bacterial activity than in-stream sediments, modelling using flow data and habitat mapping illustrated the important contribution of terrestrial soil respiration to the whole stream metabolic budgets of small headwater streams. In addition, microbial community composition examined using phospholipid fatty acid analysis clearly differentiated between terrestrial and aquatic communities. Freshly inundated terrestrial communities remained similar to un-inundated controls after 28 days.

  2. Nutrient uptake and community metabolism in streams draining harvested and old-growth watersheds: A preliminary assessment

    Science.gov (United States)

    Brian H. Hill; Frank H. McCormick

    2004-01-01

    The effect of timber harvesting on streams is assessed using two measures of ecosystem function: nutrient spiraling and community metabolism. This research is being conducted in streams of the southern Appalachian Mountains of North Carolina, the Ouachita Mountains of Arkansas, the Cascade Mountains of Oregon, and the redwood forests of northern California, in order to...

  3. Nitrification-driven forms of nitrogen metabolism in microbial mat communities thriving along an ammonium-enriched subsurface geothermal stream

    Science.gov (United States)

    Nishizawa, Manabu; Koba, Keisuke; Makabe, Akiko; Yoshida, Naohiro; Kaneko, Masanori; Hirao, Shingo; Ishibashi, Jun-ichiro; Yamanaka, Toshiro; Shibuya, Takazo; Kikuchi, Tohru; Hirai, Miho; Miyazaki, Junichi; Nunoura, Takuro; Takai, Ken

    2013-07-01

    We report here the concurrence and interaction among forms of nitrogen metabolism in thermophilic microbial mat communities that developed in an ammonium-abundant subsurface geothermal stream. First, the physical and chemical conditions of the stream water at several representative microbial mat habitats (including upper, middle and downstream sites) were characterized. A thermodynamic calculation using these physical and chemical conditions predicted that nitrification consisting of ammonia and nitrite oxidations would provide one of the largest energy yields of chemolithotrophic metabolisms. Second, near-complete prokaryotic 16S rRNA gene clone analysis was conducted for representative microbial mat communities at the upper, middle and downstream sites. The results indicated a dynamic shift in the 16S rRNA gene phylotype composition through physical and chemical variations of the stream water. The predominant prokaryotic components varied from phylotypes related to hydrogeno (H2)- and thio (S)-trophic Aquificales, thermophilic methanotrophs and putative ammonia-oxidizing Archaea (AOA) located upstream (72 °C) to the phylotypes affiliated with putative AOA and nitrite-oxidizing bacteria (NOB) located at the middle and downstream sites (65 and 57 °C, respectively). In addition, the potential in situ metabolic activities of different forms of nitrogen metabolism were estimated through laboratory experiments using bulk microbial mat communities. Finally, the compositional and isotopic variation in nitrogen compounds was investigated in the stream water flowing over the microbial mats and in the interstitial water inside the mats. Although the stream water was characterized by a gradual decrease in the total ammonia concentration (ΣNH3: the sum of ammonia and ammonium concentrations) and a gradual increase in the total concentration of nitrite and nitrate (NO2- + NO3-), the total inorganic nitrogen concentration (TIN: the sum of ΣNH3, NO2- and NO3- concentrations

  4. The relative influence of nutrients and habitat on stream metabolism in agricultural streams

    Science.gov (United States)

    Frankforter, J.D.; Weyers, H.S.; Bales, J.D.; Moran, P.W.; Calhoun, D.L.

    2010-01-01

    Stream metabolism was measured in 33 streams across a gradient of nutrient concentrations in four agricultural areas of the USA to determine the relative influence of nutrient concentrations and habitat on primary production (GPP) and respiration (CR-24). In conjunction with the stream metabolism estimates, water quality and algal biomass samples were collected, as was an assessment of habitat in the sampling reach. When data for all study areas were combined, there were no statistically significant relations between gross primary production or community respiration and any of the independent variables. However, significant regression models were developed for three study areas for GPP (r 2 = 0.79-0.91) and CR-24 (r 2 = 0.76-0.77). Various forms of nutrients (total phosphorus and area-weighted total nitrogen loading) were significant for predicting GPP in two study areas, with habitat variables important in seven significant models. Important physical variables included light availability, precipitation, basin area, and in-stream habitat cover. Both benthic and seston chlorophyll were not found to be important explanatory variables in any of the models; however, benthic ash-free dry weight was important in two models for GPP. ?? 2009 The Author(s).

  5. Resource synergy in stream periphyton communities

    Energy Technology Data Exchange (ETDEWEB)

    Hill, Walter [University of Illinois, Urbana-Champaign; Fanta, S.E. [University of Illinois; Roberts, Brian J [ORNL; Francoeur, Steven N. [Eastern Michigan University, Ypsilanti, MI

    2011-03-01

    1. Light and nutrients play pivotal roles in determining the growth of autotrophs, yet the potential for synergistic interactions between the two resources in algal communities is poorly understood, especially in stream ecosystems. In this study, light and phosphorus were manipulated in large experimental streams to examine resource colimitation and synergy in stream periphyton. 2. Whole-stream metabolism was simultaneously limited by light and phosphorus. Increasing the supply of either light or phosphorus resulted in significant increases in primary production and the transformation of the streams from heterotrophy to autotrophy. 3. Resource-driven changes in periphyton community structure occurred in concert with changes in production. Algal assemblages in highly shaded streams were composed primarily of small diatoms such as Achnanthidium minutissima, whereas larger diatoms such as Melosira varians predominated at higher irradiances. Phosphorus enrichment had relatively little effect on assemblage structure, but it did substantially diminish the abundance of Meridion circulare, a diatom whose mucilaginous colonies were conspicuously abundant in phosphorus-poor, high-light streams. Bacterial biomass declined relative to algal biomass with increases in primary productivity, regardless of whether the increases were caused by light or phosphorus. 4. Synergistic effects on primary production appeared to occur because the availability of one resource facilitated the utilization of the other. Light increased the abundance of large diatoms, which are known to convert high concentrations of nutrients into primary production more effectively than smaller taxa. Phosphorus enrichment led to the replacement of Meridion circulare by non-mucilaginous taxa in phosphorus-enriched streams, and we hypothesize that this change enabled more efficient use of light in photosynthesis. Higher ratios of chlorophyll a : biomass in phosphorus-enriched streams may have also led to more

  6. Discharge modulates stream metabolism dependence on fine particulate organic carbon in a Mediterranean WWTP-influenced stream

    Science.gov (United States)

    Drummond, J. D.; Bernal, S.; Meredith, W.; Schumer, R.; Martí Roca, E.

    2017-12-01

    Waste water treatment plant (WWTP) effluents constitute point source inputs of fine sediment, nutrients, carbon, and microbes to stream ecosystems. A range of responses to these inputs may be observed in recipient streams, including increases in respiration rates, which augment CO2 emissions to the atmosphere. Yet, little is known about which fractions of organic carbon (OC) contribute the most to stream metabolism in WWTP-influenced streams. Fine particulate OC (POC) represents ca. 40% of the total mass of OC in river networks, and is generally more labile than dissolved OC. Therefore, POC inputs from WWTPs could contribute disproportionately to higher rates of heterotrophic metabolism by stream microbial communities. The aim of this study was to investigate the influence of POC inputs from a WWTP effluent on the metabolism of a Mediterranean stream over a wide range of hydrologic conditions. We hypothesized that POC inputs would have a positive effect on respiration rates, and that the response to POC availability would be larger during low flows when the dilution capacity of the recipient stream is negligible. We focused on the easily resuspended fine sediment near the sediment-water interface (top 3 cm), as this region is a known hot spot for biogeochemical processes. For one year, samples of resuspended sediment were collected bimonthly at 7 sites from 0 to 800 m downstream of the WWTP point source. We measured total POC, organic matter (OM) content (%), and the associated metabolic activity of the resuspended sediment using the resazurin-resorufin smart tracer system as a proxy for aerobic ecosystem respiration. Resuspended sediment showed no difference in total POC over the year, while the OM content increased with decreasing discharge. This result together with the decreasing trend of total POC observed downstream of the point source during autumn after a long dry period, suggests that the WWTP effluent was the main contributor to stream POC. Furthermore

  7. Stream hydraulics and temperature determine the metabolism of geothermal Icelandic streams

    Directory of Open Access Journals (Sweden)

    Demars B. O.L.

    2011-07-01

    Full Text Available Stream ecosystem metabolism plays a critical role in planetary biogeochemical cycling. Stream benthic habitat complexity and the available surface area for microbes relative to the free-flowing water volume are thought to be important determinants of ecosystem metabolism. Unfortunately, the engineered deepening and straightening of streams for drainage purposes could compromise stream natural services. Stream channel complexity may be quantitatively expressed with hydraulic parameters such as water transient storage, storage residence time, and water spiralling length. The temperature dependence of whole stream ecosystem respiration (ER, gross primary productivity (GPP and net ecosystem production (NEP = GPP − ER has recently been evaluated with a “natural experiment” in Icelandic geothermal streams along a 5–25 °C temperature gradient. There remained, however, a substantial amount of unexplained variability in the statistical models, which may be explained by hydraulic parameters found to be unrelated to temperature. We also specifically tested the additional and predicted synergistic effects of water transient storage and temperature on ER, using novel, more accurate, methods. Both ER and GPP were highly related to water transient storage (or water spiralling length but not to the storage residence time. While there was an additional effect of water transient storage and temperature on ER (r2 = 0.57; P = 0.015, GPP was more related to water transient storage than temperature. The predicted synergistic effect could not be confirmed, most likely due to data limitation. Our interpretation, based on causal statistical modelling, is that the metabolic balance of streams (NEP was primarily determined by the temperature dependence of respiration. Further field and experimental work is required to test the predicted synergistic effect on ER. Meanwhile, since higher metabolic activities allow for higher pollutant degradation or uptake

  8. Coupled Spatio-Temporal Patterns of Solute Transport, Metabolism and Nutrient Uptake in Streams

    Science.gov (United States)

    Kurz, M. J.; Schmidt, C.

    2017-12-01

    Slower flow velocities and longer residence times within stream transient storage (TS) zones facilitate interaction between solutes and microbial communities, potentially increasing local rates of metabolic activity. Multiple factors, including channel morphology and substrate, variable hydrology, and seasonal changes in biological and physical parameters, result in changes in the solute transport dynamics and reactivity of TS zones over time and space. These changes would be expected to, in turn, influence rates of whole-stream ecosystem functions such as metabolism and nutrient uptake. However, the linkages between solute transport and ecosystem functioning within TS zones, and the contribution of TS zones to whole-stream functioning, are not always so straight forward. This may be due, in part, to methodological challenges. In this study we investigated the influence of stream channel hydro-morphology and substrate type on reach (103 m) and sub-reach (102 m) scale TS and ecosystem functioning. Patterns in solute transport, metabolism and nitrate uptake were tracked from April through October in two contrasting upland streams using several methods. The two streams, located in the Harz Mountains, Germany, are characterized by differing size (0.02 vs. 0.3 m3/s), dominant stream channel substrate (bedrock vs. alluvium) and sub-reach morphology (predominance of pools, riffles and glides). Solute transport parameters and respiration rates at the reach and sub-reach scale were estimated monthly from coupled pulse injections of the reactive tracer resazurin (Raz) and conservative tracers uranine and salt. Raz, a weakly fluorescent dye, irreversibly transforms to resorufin (Rru) under mildly reducing conditions, providing a proxy for aerobic respiration. Daily rates of primary productivity, respiration and nitrate retention at the reach scale were estimated using the diel cycles in dissolved oxygen and nitrate concentrations measured by in-situ sensors. Preliminary

  9. The Effects of Agricultural Land-use on Stream Fish and Invertebrate Communities and Food-web Structure.

    Science.gov (United States)

    North, C. A.; Fischer, R. U.

    2005-05-01

    Incorporating knowledge of the surrounding landscape can further the understanding of stream processes. This is particularly true in areas like the Midwest where human alteration of the landscape, such as conversion of natural cover types into cultivated row crops, is widespread. When assessing stream health, the composition and structure of biological communities themselves often are the best indicators of water quality. Previous work in Hurricane Creek (Coles and Cumberland Counties, IL) demonstrated significant differences in water chemistry and community metabolism between sites subject to differing intensities of farming in the upstream watershed. Our objective was to examine differences in fish and invertebrate communities at four sites along the stream representing varying degrees of agricultural land-use. Fish were sampled using electroseining techniques and invertebrates were collected using the 20-jab method in each of four seasons. Sites were compared using fish and invertebrate community metrics, including indices of biotic integrity (IBI, MBI). Stable isotope analyses were also performed to quantify differences in food-web structure in streams draining watersheds characterized by different degrees of agricultural land-use. This study improves understanding of how landscape alteration impacts stream biota and will facilitate more informed decisions concerning stream rehabilitation.

  10. A continuous-flow system for measuring in vitro oxygen and nitrogen metabolism in separated stream communities

    DEFF Research Database (Denmark)

    Prahl, C.; Jeppesen, E.; Sand-Jensen, Kaj

    1991-01-01

    on the stream bank, consists of several macrophyte and sediment chambers equipped with a double-flow system that ensures an internal water velocity close to that in the stream and which, by continuously renewing the water, mimics diel fluctuation in stream temperature and water chemistry. Water temperature...... production and dark respiration occurred at similar rates (6-7g O2 m-2 day-1), net balance being about zero. Inorganic nitrogen was consumed both by the sediment and to a greater extent by the macrophytes, the diel average consumption being 1g N m-2 day-1. 3. The sum of the activity in the macrophyte...... and sediment chambers corresponded to the overall activity of the stream section as determined by upstream/downstream mass balance. This indicates that the results obtained with the continuous-flow chambers realistically describe the oxygen and the nitrogen metabolism of the stream....

  11. Linkage between the temporal and spatial variability of dissolved organic matter and whole-stream metabolism

    Directory of Open Access Journals (Sweden)

    S. Halbedel

    2013-08-01

    Full Text Available Dissolved organic matter (DOM is an important resource for microbes, thus affecting whole-stream metabolism. However, the factors influencing its chemical composition and thereby also its bio-availability are complex and not thoroughly understood. It was hypothesized that whole-stream metabolism is linked to DOM composition and that the coupling of both is influenced by seasonality and different land-use types. We tested this hypothesis in a comparative study on two pristine forestry streams and two non-forestry streams. The investigated streams were located in the Harz Mountains (central Europe, Germany. The metabolic rate was measured with a classical two-station oxygen change technique and the variability of DOM with fluorescence spectroscopy. All streams were clearly net heterotrophic, whereby non-forestry streams showed a higher primary production, which was correlated to irradiance and phosphorus concentration. We detected three CDOM components (C1, C2, C3 using parallel factor (PARAFAC analysis. We compared the excitation and emission maxima of these components with the literature and correlated the PARAFAC components with each other and with fluorescence indices. The correlations suggest that two PARAFAC components are derived from allochthonous sources (C1, C3 and one is derived autochthonously (C2. The chromophoric DOM matrix was dominated by signals of humic-like substances with a highly complex structure, followed by humic-like, fulfic acids, low-molecular-weight substances, and with minor amounts of amino acids and proteins. The ratios of these PARAFAC components (C1 : C2, C1 : C3, C3 : C2 differed with respect to stream types (forestry versus non-forestry. We demonstrated a significant correlation between gross primary production (GPP and signals of autochthonously derived, low-molecular-weight humic-like substances. A positive correlation between P / R (i.e. GPP/daily community respiration and the fluorescence index FI suggests

  12. Effects of flow intermittency and pharmaceutical exposure on the structure and metabolism of stream biofilms.

    Science.gov (United States)

    Corcoll, Natàlia; Casellas, Maria; Huerta, Belinda; Guasch, Helena; Acuña, Vicenç; Rodríguez-Mozaz, Sara; Serra-Compte, Albert; Barceló, Damià; Sabater, Sergi

    2015-01-15

    Increasing concentrations of pharmaceutical compounds occur in many rivers, but their environmental risk remains poorly studied in stream biofilms. Flow intermittency shapes the structure and functions of ecosystems, and may enhance their sensitivity to toxicants. This study evaluates the effects of a long-term exposure of biofilm communities to a mixture of pharmaceutical compounds at environmental concentrations on biofilm bioaccumulation capacity, the structure and metabolic processes of algae and bacteria communities, and how their potential effects were enhanced or not by the occurrence of flow intermittency. To assess the interaction between those two stressors, an experiment with artificial streams was performed. Stream biofilms were exposed to a mixture of pharmaceuticals, as well as to a short period of flow intermittency. Results indicate that biofilms were negatively affected by pharmaceuticals. The algal biomass and taxa richness decreased and unicellular green algae relatively increased. The structure of the bacterial (based on denaturing gradient gel electrophoresis of amplified 16S rRNA genes) changed and showed a reduction of the operational taxonomic units (OTUs) richness. Exposed biofilms showed higher rates of metabolic processes, such as primary production and community respiration, attributed to pharmaceuticals stimulated an increase of green algae and heterotrophs, respectively. Flow intermittency modulated the effects of chemicals on natural communities. The algal community became more sensitive to short-term exposure of pharmaceuticals (lower EC50 value) when exposed to water intermittency, indicating cumulative effects between the two assessed stressors. In contrast to algae, the bacterial community became less sensitive to short-term exposure of pharmaceuticals (higher EC50) when exposed to water intermittency, indicating co-tolerance phenomena. According to the observed effects, the environmental risk of pharmaceuticals in nature is high

  13. Watershed Urbanization Linked to Differences in Stream Bacterial Community Composition

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    Jacob D. Hosen

    2017-08-01

    Full Text Available Urbanization strongly influences headwater stream chemistry and hydrology, but little is known about how these conditions impact bacterial community composition. We predicted that urbanization would impact bacterial community composition, but that stream water column bacterial communities would be most strongly linked to urbanization at a watershed-scale, as measured by impervious cover, while sediment bacterial communities would correlate with environmental conditions at the scale of stream reaches. To test this hypothesis, we determined bacterial community composition in the water column and sediment of headwater streams located across a gradient of watershed impervious cover using high-throughput 16S rRNA gene amplicon sequencing. Alpha diversity metrics did not show a strong response to catchment urbanization, but beta diversity was significantly related to watershed impervious cover with significant differences also found between water column and sediment samples. Samples grouped primarily according to habitat—water column vs. sediment—with a significant response to watershed impervious cover nested within each habitat type. Compositional shifts for communities in urbanized streams indicated an increase in taxa associated with human activity including bacteria from the genus Polynucleobacter, which is widespread, but has been associated with eutrophic conditions in larger water bodies. Another indicator of communities in urbanized streams was an OTU from the genus Gallionella, which is linked to corrosion of water distribution systems. To identify changes in bacterial community interactions, bacterial co-occurrence networks were generated from urban and forested samples. The urbanized co-occurrence network was much smaller and had fewer co-occurrence events per taxon than forested equivalents, indicating a loss of keystone taxa with urbanization. Our results suggest that urbanization has significant impacts on the community composition

  14. Impacts of fish farm pollution on ecosystem structure and function of tropical headwater streams

    International Nuclear Information System (INIS)

    Rosa, Rodrigo dos Santos; Aguiar, Anna Carolina Fornero; Boëchat, Iola Gonçalves; Gücker, Björn

    2013-01-01

    We investigated the impacts of effluent discharge from small flow-through fish farms on stream water characteristics, the benthic invertebrate community, whole-system nitrate uptake, and ecosystem metabolism of three tropical headwater streams in southeastern Brazil. Effluents were moderately, i.e. up to 20-fold enriched in particulate organic matter (POM) and inorganic nutrients in comparison to stream water at reference sites. Due to high dilution with stream water, effluent discharge resulted in up to 2.0-fold increases in stream water POM and up to 1.8-fold increases in inorganic nutrients only. Moderate impacts on the benthic invertebrate community were detected at one stream only. There was no consistent pattern of effluent impact on whole-stream nitrate uptake. Ecosystem metabolism, however, was clearly affected by effluent discharge. Stream reaches impacted by effluents exhibited significantly increased community respiration and primary productivity, stressing the importance of ecologically sound best management practices for small fish farms in the tropics. -- Highlights: ► Fish farm effluent discharge had moderate effects on stream water quality. ► Impacts on the benthic invertebrate community occurred at one stream. ► Whole-stream nitrate uptake showed no consistent impact pattern. ► Effluents caused considerable increases in stream ecosystem metabolism. ► Compliance with best management practices is important for small fish farms. -- Moderate water pollution by small fish farms caused considerable eutrophication responses in tropical headwater streams

  15. Inter-regional comparison of land-use effects on stream metabolism

    Science.gov (United States)

    Melody J. Bernot; Daniel J. Sobota; Robert O. Hall; Patrick J. Mulholland; Walter K. Dodds; Jackson R. Webster; Jennifer L. Tank; Linda R. Ashkenas; Lee W. Cooper; Clifford N. Dahm; Stanley V. Gregory; Nancy B. Grimm; Stephen K. Hamilton; Sherri L. Johnson; William H. McDowell; Judith L. Meyer; Bruce Peterson; Geoffrey C. Poole; H. Maurice Valett; Clay Arango; Jake J. Beaulieu; Amy J. Burgin; Chelsea Crenshaw; Ashley M. Helton; Laura Johnson; Jeff Merriam; B.R. Niederlehner; Jonathan M. O' Brien; Jody D. Potter; Richard W. Sheibley; Suzanne M. Thomas; Kym. Wilson

    2010-01-01

    Rates of whole-system metabolism (production and respiration) are fundamental indicators of ecosystem structure and function. Although first-order, proximal controls are well understood, assessments of the interactions between proximal controls and distal controls, such as land use and geographic region, are lacking. Thus, the influence of land use on stream metabolism...

  16. Recovery of stream communities from experimental selenium exposure

    Energy Technology Data Exchange (ETDEWEB)

    Swift, M.C.; Kuklinskal, B.; Ferkull, K. [Univ. of Minnesota, Monticello, MN (United States); Allen, K.N.; Hermanutz, R.O.; Roush, T.H.; Hedtke, S.F. [Environmental Protection Agency, Duluth, MN (United States). Environmental Research Lab.

    1994-12-31

    The effects of selenium on stream communities and their recovery from those effects were studied at MERS from 1987--1991. Selenium was dosed into two replicate streams each at concentrations of 30, 10, 2.5 and 0 (control) {mu}g L{sup {minus}1} for 18, 30, and 12 months, respectively. Recovery was monitored for three (30) or two (1 0, 2.5) years following cessation of selenium dosing. Selenium rapidly accumulated in the sediment, plants, macroinvertebrates and fish during dosing. Selenium concentrations in sediment, macroinvertebrates, and plants were as high as 2X--4X, 2X--4X, and 1X--1OX the dosed concentration in the 30, 10, and 2.5 treatments, respectively. Selenium decreased relatively rapidly following cessation of dosing. By two years after dosing ceased, selenium concentrations in plants and macroinvertebrates were little different from the controls; selenium in sediment from the 30 and 10 streams was still higher than in the control streams two years after dosing ceased. The macroinvertebrate community changed little during the dosing and recovery period. Commonly used indices of community structure showed no effect of selenium dosing. The isopod Asellus and oligochaetes in the family Tubificidae decreased rapidly following the onset of selenium dosing; their recovery following cessation of dosing was slow.

  17. Estimating autotrophic respiration in streams using daily metabolism data

    Science.gov (United States)

    Knowing the fraction of gross primary production (GPP) that is immediately respired by autotrophs and their closely associated heterotrophs (ARf) is necessary to understand the trophic base and carbon spiraling in streams. We show a means to estimate ARf from daily metabolism da...

  18. Longitudinal structure in temperate stream fish communities: evaluating conceptual models with temporal data

    Science.gov (United States)

    Roberts, James H.; Hitt, Nathaniel P.

    2010-01-01

    Five conceptual models of longitudinal fish community organization in streams were examined: (1) niche diversity model (NDM), (2) stream continuum model (SCM), (3) immigrant accessibility model (IAM), (4) environmental stability model (ESM), and (5) adventitious stream model (ASM). We used differences among models in their predictions about temporal species turnover, along with five spatiotemporal fish community data sets, to evaluate model applicability. Models were similar in predicting a positive species richness–stream size relationship and longitudinal species nestedness, but differed in predicting either similar temporal species turnover throughout the stream continuum (NDM, SCM), higher turnover upstream (IAM, ESM), or higher turnover downstream (ASM). We calculated measures of spatial and temporal variation from spatiotemporal fish data in five wadeable streams in central and eastern North America spanning 34–68 years (French Creek [New York], Piasa Creek [Illinois], Spruce Run [Virginia], Little Stony Creek [Virginia], and Sinking Creek [Virginia]). All streams exhibited substantial species turnover (i.e., at least 27% turnover in stream-scale species pools), in contrast to the predictions of the SCM. Furthermore, community change was greater in downstream than upstream reaches in four of five streams. This result is most consistent with the ASM and suggests that downstream communities are strongly influenced by migrants to and from species pools outside the focal stream. In Sinking Creek, which is isolated from external species pools, temporal species turnover (via increased richness) was higher upstream than downstream, which is a pattern most consistent with the IAM or ESM. These results corroborate the hypothesis that temperate stream habitats and fish communities are temporally dynamic and that fish migration and environmental disturbances play fundamental roles in stream fish community organization.

  19. Effects of Timber Harvesting with Best Management Practices on Ecosystem Metabolism of a Low Gradient Stream on the United States Gulf Coastal Plain

    Directory of Open Access Journals (Sweden)

    Abram DaSilva

    2013-06-01

    Full Text Available Stream metabolism can be used as a measure of freshwater ecosystem health because of its responsiveness to natural and anthropogenic changes. In this study, we used stream metabolic rates to test for the effects of a timber harvest with Louisiana’s current best management practices (BMPs. The study was conducted from 2006 to 2010 in a loblolly pine (Pinus taeda stand in north-central Louisiana, USA, 45 ha of which was clear cut harvested in the summer of 2007. Dissolved oxygen (DO, water temperature, and stream depth were recorded at a site upstream (serving as a reference and a site downstream of the harvested area. Using diurnal DO change and an open-system, single-station method at each site, we quantified rates of net ecosystem productivity (NEP, gross primary productivity (GPP, community respiration (CR, and the GPP/CR ratio. The system was predominately heterotrophic, with a GPP/CR ratio of less than one for 82% of the time at the upstream site. No calculated metabolic rate was significantly changed by the timber harvest (two-way ANOVA with interaction; p < 0.001. Overall, the results suggest that timber harvests of similar intensity with Louisiana’s current BMPs may not significantly impact stream biological conditions.

  20. Overcoming equifinality: Leveraging long time series for stream metabolism estimation

    Science.gov (United States)

    Appling, Alison; Hall, Robert O.; Yackulic, Charles B.; Arroita, Maite

    2018-01-01

    The foundational ecosystem processes of gross primary production (GPP) and ecosystem respiration (ER) cannot be measured directly but can be modeled in aquatic ecosystems from subdaily patterns of oxygen (O2) concentrations. Because rivers and streams constantly exchange O2 with the atmosphere, models must either use empirical estimates of the gas exchange rate coefficient (K600) or solve for all three parameters (GPP, ER, and K600) simultaneously. Empirical measurements of K600 require substantial field work and can still be inaccurate. Three-parameter models have suffered from equifinality, where good fits to O2 data are achieved by many different parameter values, some unrealistic. We developed a new three-parameter, multiday model that ensures similar values for K600 among days with similar physical conditions (e.g., discharge). Our new model overcomes the equifinality problem by (1) flexibly relating K600 to discharge while permitting moderate daily deviations and (2) avoiding the oft-violated assumption that residuals in O2 predictions are uncorrelated. We implemented this hierarchical state-space model and several competitor models in an open-source R package, streamMetabolizer. We then tested the models against both simulated and field data. Our new model reduces error by as much as 70% in daily estimates of K600, GPP, and ER. Further, accuracy benefits of multiday data sets require as few as 3 days of data. This approach facilitates more accurate metabolism estimates for more streams and days, enabling researchers to better quantify carbon fluxes, compare streams by their metabolic regimes, and investigate controls on aquatic activity.

  1. Detrital microbial community development and phosphorus dynamics in a stream ecosystem

    International Nuclear Information System (INIS)

    Perkins, R.E.; Elwood, J.W.; Sayler, G.S.

    1986-06-01

    Detrital microbial community development and phosphorus dynamics in a lotic system were investigated in non-recirculating laboratory streams contains leaf detritus. Temporal patterns of microbial colonization, as determined by scanning electron microscopy, indicate leaf species dependency and that bacteria were the first colonizers followed by fungi. An extensive glycocalyx layer developed. Phosphorus incorporation rates of both the whole community and intracellular components were determined by time-course measurements of 33 PO 4 or 32 PO 4 . Phosphorus turnover rates were determined by a sequential double-labeling procedure using 33 PO 4 and 32 PO 4 , in which the microbiota were labeled with 33 P until in isotopic equilibrium, then 32 P was added. The turnover rate was determined by time-course measurements of the ratio 32 P to 33 P. Snail grazing resulted in an increase in phosphorus metabolism per unit microbial biomass; however, per unit area of leaf surface no increase was observed. Grazing also caused a two-fold reduction in microbial biomass. The results indicate that microbiota associated with decomposing leaves slowly recycle phosphorus, are slowly growing, and have a low metabolic activity. The spiraling length is shortened by microbiota on a short-term basis; however, it may increase on a long-term basis due to hydrological transport of detritus downstream

  2. Functional Process Zones Characterizing Aquatic Insect Communities in Streams of the Brazilian Cerrado.

    Science.gov (United States)

    Godoy, B S; Simião-Ferreira, J; Lodi, S; Oliveira, L G

    2016-04-01

    Stream ecology studies see to understand ecological dynamics in lotic systems. The characterization of streams into Functional Process Zones (FPZ) has been currently debated in stream ecology because aquatic communities respond to functional processes of river segments. Therefore, we tested if different functional process zones have different number of genera and trophic structure using the aquatic insect community of Neotropical streams. We also assessed whether using physical and chemical variables may complement the approach of using FPZ to model communities of aquatic insects in Cerrado streams. This study was conducted in 101 streams or rivers from the central region of the state of Goiás, Brazil. We grouped the streams into six FPZ associated to size of the river system, presence of riparian forest, and riverbed heterogeneity. We used Bayesian models to compare number of genera and relative frequency of the feeding groups between FPZs. Streams classified in different FPZs had a different number of genera, and the largest and best preserved rivers had an average of four additional genera. Trophic structure exhibited low variability among FPZs, with little difference both in the number of genera and in abundance. Using functional process zones in Cerrado streams yielded good results for Ephemeroptera, Plecoptera, and Trichoptera communities. Thus, species distribution and community structure in the river basin account for functional processes and not necessarily for the position of the community along a longitudinal dimension of the lotic system.

  3. Urbanization reduces and homogenizes trait diversity in stream macroinvertebrate communities.

    Science.gov (United States)

    Barnum, Thomas R; Weller, Donald E; Williams, Meghan

    2017-12-01

    More than one-half of the world's population lives in urban areas, so quantifying the effects of urbanization on ecological communities is important for understanding whether anthropogenic stressors homogenize communities across environmental and climatic gradients. We examined the relationship of impervious surface coverage (a marker of urbanization) and the structure of stream macroinvertebrate communities across the state of Maryland and within each of Maryland's three ecoregions: Coastal Plain, Piedmont, and Appalachian, which differ in stream geomorphology and community composition. We considered three levels of trait organization: individual traits, unique combinations of traits, and community metrics (functional richness, functional evenness, and functional divergence) and three levels of impervious surface coverage (low [10%]). The prevalence of an individual trait differed very little between low impervious surface and high impervious surface sites. The arrangement of trait combinations in community trait space for each ecoregion differed when impervious surface coverage was low, but the arrangement became more similar among ecoregions as impervious surface coverage increased. Furthermore, trait combinations that occurred only at low or medium impervious surface coverage were clustered in a subset of the community trait space, indicating that impervious surface affected the presence of only a subset of trait combinations. Functional richness declined with increasing impervious surface, providing evidence for environmental filtering. Community metrics that include abundance were also sensitive to increasing impervious surface coverage: functional divergence decreased while functional evenness increased. These changes demonstrate that increasing impervious surface coverage homogenizes the trait diversity of macroinvertebrate communities in streams, despite differences in initial community composition and stream geomorphology among ecoregions. Community

  4. Watershed Land Use and Seasonal Variation Constrain the Influence of Riparian Canopy Cover on Stream Ecosystem Metabolism

    Science.gov (United States)

    While watershed and local scale controls on stream metabolism have been independently investigated, little is known about how controls exerted at these different scales interact to determine stream metabolic rates, or how these interactions vary across seasons. To address this ...

  5. Effects of remediation on the bacterial community of an acid mine drainage impacted stream.

    Science.gov (United States)

    Ghosh, Suchismita; Moitra, Moumita; Woolverton, Christopher J; Leff, Laura G

    2012-11-01

    Acid mine drainage (AMD) represents a global threat to water resources, and as such, remediation of AMD-impacted streams is a common practice. During this study, we examined bacterial community structure and environmental conditions in a low-order AMD-impacted stream before, during, and after remediation. Bacterial community structure was examined via polymerase chain reaction amplification of 16S rRNA genes followed by denaturing gradient gel electrophoresis. Also, bacterial abundance and physicochemical data (including metal concentrations) were collected and relationships to bacterial community structure were determined using BIO-ENV analysis. Remediation of the study stream altered environmental conditions, including pH and concentrations of some metals, and consequently, the bacterial community changed. However, remediation did not necessarily restore the stream to conditions found in the unimpacted reference stream; for example, bacterial abundances and concentrations of some elements, such as sulfur, magnesium, and manganese, were different in the remediated stream than in the reference stream. BIO-ENV analysis revealed that changes in pH and iron concentration, associated with remediation, primarily explained temporal alterations in bacterial community structure. Although the sites sampled in the remediated stream were in relatively close proximity to each other, spatial variation in community composition suggests that differences in local environmental conditions may have large impacts on the microbial assemblage.

  6. Summer periphyton community in two streams of the Pampa Plain, Argentina

    Directory of Open Access Journals (Sweden)

    Esquius Karina Soledad

    2011-11-01

    Full Text Available During summer 2001, periphytic algae associated to the giant bulrush Schoenoplectus californicus (Cyperaceae were studied in Los Padres and La Tapera streams (Pampa Plain, Argentina. One hundred and seven taxa were determined, being 76 of them common to both sampling sites. Diversity, total number of taxa and abundance of periphytic algae were greater in stems from the effl uent (La Tapera Stream. Diatoms were the most important group in both streams, according to their richness and abundance. Periphyton from the infl uent (Los Padres Stream was characterized by the dominance of the diatom Navicula cryptocephala and the codominance of another three algae. In contrast in La Tapera Stream, not any species could be recognized as dominant. Periphyton community architecture was more complex in the effl uent, with a high development of fi ve physiognomic groups. In conclusion, algal community attached to S. californicus differs in terms of diversity, abundance and community complexity, possibly due to the diffe rences registered in certain abiotic parameters, mainly in water transparency and velocity.

  7. Detrital microbial community development and phosphorus dynamics in a stream ecosystem

    Energy Technology Data Exchange (ETDEWEB)

    Perkins, R.E.; Elwood, J.W.; Sayler, G.S.

    1986-06-01

    Detrital microbial community development and phosphorus dynamics in a lotic system were investigated in non-recirculating laboratory streams contains leaf detritus. Temporal patterns of microbial colonization, as determined by scanning electron microscopy, indicate leaf species dependency and that bacteria were the first colonizers followed by fungi. An extensive glycocalyx layer developed. Phosphorus incorporation rates of both the whole community and intracellular components were determined by time-course measurements of /sup 33/PO/sub 4/ or /sup 32/PO/sub 4/. Phosphorus turnover rates were determined by a sequential double-labeling procedure using /sup 33/PO/sub 4/ and /sup 32/PO/sub 4/, in which the microbiota were labeled with /sup 33/P until in isotopic equilibrium, then /sup 32/P was added. The turnover rate was determined by time-course measurements of the ratio /sup 32/P to /sup 33/P. Snail grazing resulted in an increase in phosphorus metabolism per unit microbial biomass; however, per unit area of leaf surface no increase was observed. Grazing also caused a two-fold reduction in microbial biomass. The results indicate that microbiota associated with decomposing leaves slowly recycle phosphorus, are slowly growing, and have a low metabolic activity. The spiraling length is shortened by microbiota on a short-term basis; however, it may increase on a long-term basis due to hydrological transport of detritus downstream.

  8. Marine-derived nutrients, bioturbation, and ecosystem metabolism: reconsidering the role of salmon in streams.

    Science.gov (United States)

    Holtgrieve, Gordon W; Schindler, Daniel E

    2011-02-01

    In coastal areas of the North Pacific Ocean, annual returns of spawning salmon provide a substantial influx of nutrients and organic matter to streams and are generally believed to enhance the productivity of recipient ecosystems. Loss of this subsidy from areas with diminished salmon runs has been hypothesized to limit ecosystem productivity in juvenile salmon rearing habitats (lakes and streams), thereby reinforcing population declines. Using five to seven years of data from an Alaskan stream supporting moderate salmon densities, we show that salmon predictably increased stream water nutrient concentrations, which were on average 190% (nitrogen) and 390% (phosphorus) pre-salmon values, and that primary producers incorporated some of these nutrients into tissues. However, benthic algal biomass declined by an order of magnitude despite increased nutrients. We also measured changes in stream ecosystem metabolic properties, including gross primary productivity (GPP) and ecosystem respiration (ER), from three salmon streams by analyzing diel measurements of oxygen concentrations and stable isotopic ratios (delta O-O2) within a Bayesian statistical model of oxygen dynamics. Our results do not support a shift toward higher primary productivity with the return of salmon, as is expected from a nutrient fertilization mechanism. Rather, net ecosystem metabolism switched from approximately net autotrophic (GPP > or = ER) to a strongly net heterotrophic state (GPP disturbance enhanced in situ heterotrophic respiration. Salmon also changed the physical properties of the stream, increasing air-water gas exchange by nearly 10-fold during peak spawning. We suggest that management efforts to restore salmon ecosystems should consider effects on ecosystem metabolic properties and how salmon disturbance affects the incorporation of marine-derived nutrients into food webs.

  9. Influence of Wastewater Discharge on the Metabolic Potential of the Microbial Community in River Sediments.

    Science.gov (United States)

    Li, Dong; Sharp, Jonathan O; Drewes, Jörg E

    2016-01-01

    To reveal the variation of microbial community functions during water filtration process in river sediments, which has been utilized widely in natural water treatment systems, this study investigates the influence of municipal wastewater discharge to streams on the phylotype and metabolic potential of the microbiome in upstream and particularly various depths of downstream river sediments. Cluster analyses based on both microbial phylogenetic and functional data collectively revealed that shallow upstream sediments grouped with those from deeper subsurface downstream regions. These sediment samples were distinct from those found in shallow downstream sediments. Functional genes associated with carbohydrate, xenobiotic, and certain amino acid metabolisms were overrepresented in upstream and deep downstream samples. In contrast, the more immediate contact with wastewater discharge in shallow downstream samples resulted in an increase in the relative abundance of genes associated with nitrogen, sulfur, purine and pyrimidine metabolisms, as well as restriction-modification systems. More diverse bacterial phyla were associated with upstream and deep downstream sediments, mainly including Actinobacteria, Planctomycetes, and Firmicutes. In contrast, in shallow downstream sediments, genera affiliated with Betaproteobacteria and Gammaproteobacteria were enriched with putative functions that included ammonia and sulfur oxidation, polyphosphate accumulation, and methylotrophic bacteria. Collectively, these results highlight the enhanced capabilities of microbial communities residing in deeper stream sediments for the transformation of water contaminants and thus provide a foundation for better design of natural water treatment systems to further improve the removal of contaminants.

  10. Influence of Wastewater Discharge on the Metabolic Potential of the Microbial Community in River Sediments

    KAUST Repository

    Li, Dong

    2015-09-24

    To reveal the variation of microbial community functions during water filtration process in river sediments, which has been utilized widely in natural water treatment systems, this study investigates the influence of municipal wastewater discharge to streams on the phylotype and metabolic potential of the microbiome in upstream and particularly various depths of downstream river sediments. Cluster analyses based on both microbial phylogenetic and functional data collectively revealed that shallow upstream sediments grouped with those from deeper subsurface downstream regions. These sediment samples were distinct from those found in shallow downstream sediments. Functional genes associated with carbohydrate, xenobiotic, and certain amino acid metabolisms were overrepresented in upstream and deep downstream samples. In contrast, the more immediate contact with wastewater discharge in shallow downstream samples resulted in an increase in the relative abundance of genes associated with nitrogen, sulfur, purine and pyrimidine metabolisms, as well as restriction–modification systems. More diverse bacterial phyla were associated with upstream and deep downstream sediments, mainly including Actinobacteria, Planctomycetes, and Firmicutes. In contrast, in shallow downstream sediments, genera affiliated with Betaproteobacteria and Gammaproteobacteria were enriched with putative functions that included ammonia and sulfur oxidation, polyphosphate accumulation, and methylotrophic bacteria. Collectively, these results highlight the enhanced capabilities of microbial communities residing in deeper stream sediments for the transformation of water contaminants and thus provide a foundation for better design of natural water treatment systems to further improve the removal of contaminants. © 2015, Springer Science+Business Media New York.

  11. Evaluating macroinvertebrate community shifts in the confluence of freestone and limestone streams

    Directory of Open Access Journals (Sweden)

    Jennifer K. Hellmann

    2014-07-01

    Full Text Available Aquatic macroinvertebrates are critical to ecosystem functioning through their regulation of many essential top-down and bottom-up ecosystem processes such as energy translocation, nutrient flow, and detrital decomposition. However, specific preferences by macroinvertebrates for certain ranges of abiotic and biotic characteristics mean that changes in these factors often create large differences in benthic community structure. Investigations into drivers of community structure have found distinct patterns of variation between ecosystems, but drivers of macroscale variation may differ from drivers of microscale variation. Such microscale variation in macroinvertebrate community structure as a function of abiotic conditions may be found in the confluence of two geologically distinct freshwater streams. Variation in the origin, underlying bedrock, and watershed of a stream results in drastically different physical and chemical characteristics and correspondingly distinct macroinvertebrate community structures. In areas where water from geologically distinct streams flows together, a mixing zone emerges with unique chemical and physical characteristics. There is little information on how invertebrate communities are structured within this mixing zone. To investigate this, we examined how the structure of the macroinvertebrate community changed downstream of the confluence. Up to thirty metres downstream, we found distinct stream sections that mirrored physical and chemical conditions found in limestone and freestone streams, and a mixing zone with emergent properties. These physical and chemical changes between sites were accompanied by shifts in macroinvertebrate community composition. Diversity indices indicated significantly higher diversity in freestone sites than in limestone sites or the mixing zone and there was a unique composition of genera in the mixing zone that were distinct from both limestone and freestone sites. Factors driving

  12. Altitudinal patterns of diversity and functional traits of metabolically active microorganisms in stream biofilms

    Science.gov (United States)

    Wilhelm, Linda; Besemer, Katharina; Fragner, Lena; Peter, Hannes; Weckwerth, Wolfram; Battin, Tom J

    2015-01-01

    Resources structure ecological communities and potentially link biodiversity to energy flow. It is commonly believed that functional traits (generalists versus specialists) involved in the exploitation of resources depend on resource availability and environmental fluctuations. The longitudinal nature of stream ecosystems provides changing resources to stream biota with yet unknown effects on microbial functional traits and community structure. We investigated the impact of autochthonous (algal extract) and allochthonous (spruce extract) resources, as they change along alpine streams from above to below the treeline, on microbial diversity, community composition and functions of benthic biofilms. Combining bromodeoxyuridine labelling and 454 pyrosequencing, we showed that diversity was lower upstream than downstream of the treeline and that community composition changed along the altitudinal gradient. We also found that, especially for allochthonous resources, specialisation by biofilm bacteria increased along that same gradient. Our results suggest that in streams below the treeline biofilm diversity, specialisation and functioning are associated with increasing niche differentiation as potentially modulated by divers allochthonous and autochthonous constituents contributing to resources. These findings expand our current understanding on biofilm structure and function in alpine streams. PMID:25978543

  13. Fragmentation alters stream fish community structure in dendritic ecological networks.

    Science.gov (United States)

    Perkin, Joshuah S; Gido, Keith B

    2012-12-01

    Effects of fragmentation on the ecology of organisms occupying dendritic ecological networks (DENs) have recently been described through both conceptual and mathematical models, but few hypotheses have been tested in complex, real-world ecosystems. Stream fishes provide a model system for assessing effects of fragmentation on the structure of communities occurring within DENs, including how fragmentation alters metacommunity dynamics and biodiversity. A recently developed habitat-availability measure, the "dendritic connectivity index" (DCI), allows for assigning quantitative measures of connectivity in DENs regardless of network extent or complexity, and might be used to predict fish community response to fragmentation. We characterized stream fish community structure in 12 DENs in the Great Plains, USA, during periods of dynamic (summer) and muted (fall) discharge regimes to test the DCI as a predictive model of fish community response to fragmentation imposed by road crossings. Results indicated that fish communities in stream segments isolated by road crossings had reduced species richness (alpha diversity) relative to communities that maintained connectivity with the surrounding DEN during summer and fall. Furthermore, isolated communities had greater dissimilarity (beta diversity) to downstream sites notisolated by road crossings during summer and fall. Finally, dissimilarity among communities within DENs decreased as a function of increased habitat connectivity (measured using the DCI) for summer and fall, suggesting that communities within highly connected DENs tend to be more homogeneous. Our results indicate that the DCI is sensitive to community effects of fragmentation in riverscapes and might be used by managers to predict ecological responses to changes in habitat connectivity. Moreover, our findings illustrate that relating structural connectivity of riverscapes to functional connectivity among communities might aid in maintaining metacommunity

  14. Wastewater treatment plant effluent introduces recoverable shifts in microbial community composition in urban streams

    Science.gov (United States)

    Ledford, S. H.; Price, J. R.; Ryan, M. O.; Toran, L.; Sales, C. M.

    2017-12-01

    New technologies are allowing for intense scrutiny of the impact of land use on microbial communities in stream networks. We used a combination of analytical chemistry, real-time polymerase chain reaction (qPCR) and targeted amplicon sequencing for a preliminary study on the impact of wastewater treatment plant effluent discharge on urban streams. Samples were collected on two dates above and below treatment plants on the Wissahickon Creek, and its tributary, Sandy Run, in Montgomery County, PA, USA. As expected, effluent was observed to be a significant source of nutrients and human and non-specific fecal associated taxa. There was an observed increase in the alpha diversity at locations immediately below effluent outflows, which contributed many taxa involved in wastewater treatment processes and nutrient cycling to the stream's microbial community. Unexpectedly, modeling of microbial community shifts along the stream was not controlled by concentrations of measured nutrients. Furthermore, partial recovery, in the form of decreasing abundances of bacteria and nutrients associated with wastewater treatment plant processes, nutrient cycling bacteria, and taxa associated with fecal and sewage sources, was observed between effluent sources. Antecedent moisture conditions impacted overall microbial community diversity, with higher diversity occurring after rainfall. These findings hint at resilience in stream microbial communities to recover from wastewater treatment plant effluent and are vital to understanding the impacts of urbanization on microbial stream communities.

  15. Urban infrastructure influences dissolved organic matter quality and bacterial metabolism in an urban stream network

    Science.gov (United States)

    Urban streams are degraded by a suite of factors, including burial beneath urban infrastructure (i.e., roads, parking lots) that eliminates light and reduces direct organic matter inputs to streams, with likely consequences for organic matter metabolism by microbes and carbon lim...

  16. Influence of Disturbance on Habitats and Biological Communities in Lowland Streams

    DEFF Research Database (Denmark)

    Pedersen, Morten Lauge; Friberg, N.

    2009-01-01

    ). The results indicate that disturbance cascades through the stream ecosystem, primarily meditated by changes in macrophyte communities that are essential providers of habitat in unshaded lowland streams in which other structural elements, as coarse inorganic substrates and woody debris, are scarce...

  17. Response of fish communities to intense drought in Brazilian savanna streams

    Directory of Open Access Journals (Sweden)

    Dianne Michelle Alves da Silva

    2017-08-01

    Full Text Available The physical structures of streams are subjected to intense changes throughout the seasons. Intense drought in dry periods has been frequent and potentially harmful to aquatic species. In this study, we tested whether the changes in the habitat structure of the streams during the dry period determine the organization of fish communities. Five streams in the Upper Tocantins River were studied in the dry and rainy seasons. The species were characterized by 13 functional traits based on morphological measurements. The descriptors of functional diversity were: mean pairwise functional distance of species in the community (MPD and mean functionally nearest species distance (MNTD. We also calculated the standardized effect size for MPD and MNTD, an indicator of functional redundancy, and compared the observed patterns with those expected by chance. Streams differed between seasons with respect to environmental variables. Functional diversity in the rainy season did not differ from the pattern expected by chance for both metrics. While functional diversity in the dry season has not differed from the pattern expected by chance for SESMPD, a greater functional redundancy for SESMNTD was found in this season. These results indicate that environmental changes in the streams during the dry season are important constraints for fish occurrence, preventing the occurrence of functionally original species. Therefore, a prospective scenario of dry-period intensification could result in functionally redundant communities, with functional homogenization of the regional species pool.

  18. Integrating the pulse of the riverscape and landscape: modelling stream metabolism using continuous dissolved oxygen measurements

    Science.gov (United States)

    Soulsby, C.; Birkel, C.; Malcolm, I.; Tetzlaff, D.

    2013-12-01

    Stream metabolism is a fundamental pulse of the watershed which reflects both the in-stream environment and its connectivity with the wider landscape. We used high quality, continuous (15 minute), long-term (>3 years) measurement of stream dissolved oxygen (DO) concentrations to estimate photosynthetic productivity (P) and system respiration (R) in forest and moorland reaches of an upland stream with peaty soils. We calibrated a simple five parameter numerical oxygen mass balance model driven by radiation, stream and air temperature, stream depth and re-aeration capacity. This used continuous 24-hour periods for the whole time series to identify behavioural simulations where DO simulations were re-produced sufficiently well to be considered reasonable representations of ecosystem functioning. Results were evaluated using a seasonal Regional Sensitivity Analysis and a co-linearity index for parameter sensitivity. This showed that >95 % of the behavioural models for the moorland and forest sites were identifiable and able to infer in-stream processes from the DO time series for almost half of all measured days at both sites. Days when the model failed to simulate DO levels successfully provided invaluable insight into time periods when other factors are likely to disrupt in-stream metabolic processes; these include (a) flood events when scour reduces the biomass of benthic primary producers, (b) periods of high water colour in higher summer/autumn flows and (c) low flow periods when hyporheic respiration is evident. Monthly P/R ratios <1 indicate a heterotrophic system with both sites exhibiting similar temporal patterns; with a maximum in February and a second peak during summer months. However, the estimated net ecosystem productivity (NPP) suggests that the moorland reach without riparian tree cover is likely to be a much larger source of carbon to the atmosphere (122 mmol C m-2 d-1) compared to the forested reach (64 mmol C m-2 d-1). The study indicates the value

  19. Scaling measurements of metabolism in stream ecosystems: challenges and approaches to estimating reaeration

    Science.gov (United States)

    Bowden, W. B.; Parker, S.; Song, C.

    2016-12-01

    Stream ecologists have used various formulations of an oxygen budget approach as a surrogate to measure "whole-stream metabolism" (WSM) of carbon in rivers and streams. Improvements in sensor technologies that provide reliable, high-frequency measurements of dissolved oxygen concentrations in adverse field conditions has made it much easier to acquire the basic data needed to estimate WSM in remote locations over long periods (weeks to months). However, accurate estimates of WSM require reliable measurements or estimates of the reaeration coefficient (k). Small errors in estimates of k can lead to large errors in estimates of gross ecosystem production and ecosystem respiration and so the magnitude of the biological flux of CO2 to or from streams. This is an especially challenging problem in unproductive, oligotrophic streams. Unfortunately, current methods to measure reaeration directly (gas evasion) are expensive, labor-intensive, and time-consuming. As a consequence, there is a substantial mismatch between the time steps at which we can measure reaeration versus most of the other variables required to calculate WSM. As a part of the NSF Arctic Long-Term Ecological Research Project we have refined methods to measure WSM in Arctic streams and found a good relationship between measured k values and those calculated by the Energy Dissipation Model (EDM). Other researchers have also noted that this equation works well for both low- and high-order streams. The EDM is dependent on stream slope (relatively constant) and velocity (which is related to discharge or stage). These variables are easy to measure and can be used to estimate k a high frequency (minutes) over large areas (river networks). As a key part of the NSF MacroSystems Biology SCALER project we calculated WSM for multiple reaches in nested stream networks in six biomes across the United States and Australia. We calculated k by EDM and fitted k via a Bayesian model for WSM. The relationships between

  20. Testing a community water supply well located near a stream for susceptibility to stream contamination and low-flows.

    Science.gov (United States)

    Stewart-Maddox, N. S.; Tysor, E. H.; Swanson, J.; Degon, A.; Howard, J.; Tsinnajinnie, L.; Frisbee, M. D.; Wilson, J. L.; Newman, B. D.

    2014-12-01

    A community well is the primary water supply to the town of El Rito. This small rural town in is located in a semi-arid, mountainous portion of northern New Mexico where water is scarce. The well is 72 meters from a nearby intermittent stream. Initial tritium sampling suggests a groundwater connection between the stream and well. The community is concerned with the sustainability and future quality of the well water. If this well is as tightly connected to the stream as the tritium data suggests, then the well is potentially at risk due to upstream contamination and the impacts of extended drought. To examine this, we observed the well over a two-week period performing pump and recovery tests, electrical resistivity surveys, and physical observations of the nearby stream. We also collected general chemistry, stable isotope and radon samples from the well and stream. Despite the large well diameter, our pump test data exhibited behavior similar to a Theis curve, but the rate of drawdown decreased below the Theis curve late in the test. This decrease suggests that the aquifer is being recharged, possibly through delayed yield, upwelling of groundwater, or from the stream. The delayed yield hypothesis is supported by our electrical resistivity surveys, which shows very little change in the saturated zone over the course of the pump test, and by low values of pump-test estimated aquifer storativity. Observations of the nearby stream showed no change in stream-water level throughout the pump test. Together this data suggests that the interaction between the stream and the well is low, but recharge could be occurring through other mechanisms such as delayed yield. Additional pump tests of longer duration are required to determine the exact nature of the aquifer and its communication with the well.

  1. PiSCES: Pi(scine) stream community estimation software: A tool for nationwide fish assemblage predictions

    Science.gov (United States)

    Background/Question/Methods What species of fish might someone find in a local stream? How might that community change as a result of changes to characteristics of the stream and its watershed? PiSCES is a browser-based toolkit developed to predict a fish community for any NHD-Pl...

  2. Do Riparian Buffers Protect Stream Invertebrate Communities in South American Atlantic Forest Agricultural Areas?

    Science.gov (United States)

    Hunt, L.; Marrochi, N.; Bonetto, C.; Liess, M.; Buss, D. F.; Vieira da Silva, C.; Chiu, M.-C.; Resh, V. H.

    2017-12-01

    We investigated the influence and relative importance of insecticides and other agricultural stressors in determining variability in invertebrate communities in small streams in intensive soy-production regions of Brazil and Paraguay. In Paraguay we sampled 17 sites on tributaries of the Pirapó River in the state of Itapúa and in Brazil we sampled 18 sites on tributaries of the San Francisco River in the state of Paraná. The riparian buffer zones generally contained native Atlantic forest remnants and/or introduced tree species at various stages of growth. In Brazil the stream buffer width was negatively correlated with sediment insecticide concentrations and buffer width was found to have moderate importance in mitigating effects on some sensitive taxa such as mayflies. However, in both regions insecticides had low relative importance in explaining variability in invertebrate communities, while various habitat parameters were more important. In Brazil, the percent coverage of soft depositional sediment in streams was the most important agriculture-related explanatory variable, and the overall stream-habitat score was the most important variable in Paraguay streams. Paraguay and Brazil both have laws requiring forested riparian buffers. The ample forested riparian buffer zones typical of streams in these regions are likely to have mitigated the effects of pesticides on stream invertebrate communities. This study provides evidence that riparian buffer regulations in the Atlantic Forest region are protecting stream ecosystems from pesticides and other agricultural stressors. Further studies are needed to determine the minimum buffer widths necessary to achieve optimal protection.

  3. Microbial community diversity and composition varies with habitat characteristics and biofilm function in macrophyte-rich streams

    DEFF Research Database (Denmark)

    Levi, Peter S.; Starnawski, Piotr; Poulsen, Britta

    2017-01-01

    Biofilms in streams play an integral role in ecosystem processes and function yet few studies have investigated the broad diversity of these complex prokaryotic and eukaryotic microbial communities. Physical habitat characteristics can affect the composition and abundance of microorganisms...... in these biofilms by creating microhabitats. Here we describe the prokaryotic and eukaryotic microbial diversity of biofilms in sand and macrophyte habitats (i.e. epipsammon and epiphyton, respectively) in five macrophyte-rich streams in Jutland, Denmark. The macrophyte species varied in growth morphology, C......:N stoichiometry, and preferred stream habitat, providing a range in environmental conditions for the epiphyton. Among all habitats and streams, the prokaryotic communities were dominated by common phyla, including Alphaproteobacteria, Bacteriodetes, and Gammaproteobacteria, while the eukaryotic communities were...

  4. Denitrification in agriculturally impacted streams: seasonal changes in structure and function of the bacterial community.

    Directory of Open Access Journals (Sweden)

    Erin Manis

    Full Text Available Denitrifiers remove fixed nitrogen from aquatic environments and hydrologic conditions are one potential driver of denitrification rate and denitrifier community composition. In this study, two agriculturally impacted streams in the Sugar Creek watershed in Indiana, USA with different hydrologic regimes were examined; one stream is seasonally ephemeral because of its source (tile drainage, whereas the other stream has permanent flow. Additionally, a simulated flooding experiment was performed on the riparian benches of the ephemeral stream during a dry period. Denitrification activity was assayed using the chloramphenicol amended acetylene block method and bacterial communities were examined based on quantitative PCR and terminal restriction length polymorphisms of the nitrous oxide reductase (nosZ and 16S rRNA genes. In the stream channel, hydrology had a substantial impact on denitrification rates, likely by significantly lowering water potential in sediments. Clear patterns in denitrification rates were observed among pre-drying, dry, and post-drying dates; however, a less clear scenario was apparent when analyzing bacterial community structure suggesting that denitrifier community structure and denitrification rate were not strongly coupled. This implies that the nature of the response to short-term hydrologic changes was physiological rather than increases in abundance of denitrifiers or changes in composition of the denitrifier community. Flooding of riparian bench soils had a short-term, transient effect on denitrification rate. Our results imply that brief flooding of riparian zones is unlikely to contribute substantially to removal of nitrate (NO3- and that seasonal drying of stream channels has a negative impact on NO3- removal, particularly because of the time lag required for denitrification to rebound. This time lag is presumably attributable to the time required for the denitrifiers to respond physiologically rather than a change

  5. Benthic macroinvertebrate community of a fourth order stream in ...

    African Journals Online (AJOL)

    cinthia

    Full Length Research Paper. Benthic macroinvertebrate community of a fourth order stream in Kashmir Himalaya, India. Shazia Habib1* and A.R. Yousuf2. 1Department of Environmental Science, University of Kashmir, Srinagar, India. 2National Green Tribunal, Government of India, India. Received 31 December, 2013; ...

  6. Macroinvertebrate community structure and function along gradients of physical stream quality and pesticide contamination in Danish streams

    DEFF Research Database (Denmark)

    Rasmussen, Jes

    to stream are surface runoff and tile drainage giving rise to short pulses of acute contamination strongly coinciding with high levels of precipitation. Field studies indicate that macroinvertebrate community structure can be impacted by pesticides during spraying seasons in May and June, but also...... was calculated for 1 km2 catchments (produced from topographical maps) on Funen, Denmark. The physical condition (substrate, meandering etc.) of 1st and 2nd order streams (based on existing data from the National Monitoring Programme and personal exploring) draining these catchments was, additionally, assessed...

  7. Macroinvertebrate community structure and function along gradients of physical stream quality and pesticide contamination in Danish streams

    DEFF Research Database (Denmark)

    Rasmussen, Jes

    to stream are surface runoff and tile drainage giving rise to short pulses of acute contamination strongly coinciding with high levels of precipitation. Field studies indicate that macroinvertebrate community structure can be impacted by pesticides during spraying seasons in May and June, but also...

  8. GENOME-BASED MODELING AND DESIGN OF METABOLIC INTERACTIONS IN MICROBIAL COMMUNITIES

    Directory of Open Access Journals (Sweden)

    Radhakrishnan Mahadevan

    2012-10-01

    With the advent of genome sequencing, omics technologies, bioinformatics and genome-scale modeling, researchers now have unprecedented capabilities to analyze and engineer the metabolism of microbial communities. The goal of this review is to summarize recent applications of genome-scale metabolic modeling to microbial communities. A brief introduction to lumped community models is used to motivate the need for genome-level descriptions of individual species and their metabolic interactions. The review of genome-scale models begins with static modeling approaches, which are appropriate for communities where the extracellular environment can be assumed to be time invariant or slowly varying. Dynamic extensions of the static modeling approach are described, and then applications of genome-scale models for design of synthetic microbial communities are reviewed. The review concludes with a summary of metagenomic tools for analyzing community metabolism and an outlook for future research.

  9. A community-based exercise intervention transitions metabolically abnormal obese adults to a metabolically healthy obese phenotype

    Science.gov (United States)

    Dalleck, Lance C; Van Guilder, Gary P; Richardson, Tara B; Bredle, Donald L; Janot, Jeffrey M

    2014-01-01

    Background Lower habitual physical activity and poor cardiorespiratory fitness are common features of the metabolically abnormal obese (MAO) phenotype that contribute to increased cardiovascular disease risk. The aims of the present study were to determine 1) whether community-based exercise training transitions MAO adults to metabolically healthy, and 2) whether the odds of transition to metabolically healthy were larger for obese individuals who performed higher volumes of exercise and/or experienced greater increases in fitness. Methods and results Metabolic syndrome components were measured in 332 adults (190 women, 142 men) before and after a supervised 14-week community-based exercise program designed to reduce cardiometabolic risk factors. Obese (body mass index ≥30 kg · m2) adults with two to four metabolic syndrome components were classified as MAO, whereas those with no or one component were classified as metabolically healthy but obese (MHO). After community exercise, 27/68 (40%) MAO individuals (Pmetabolically healthy, increasing the total number of MHO persons by 73% (from 37 to 64). Compared with the lowest quartiles of relative energy expenditure and change in fitness, participants in the highest quartiles were 11.6 (95% confidence interval: 2.1–65.4; Pexercise transitions MAO adults to metabolically healthy. MAO adults who engaged in higher volumes of exercise and experienced the greatest increase in fitness were significantly more likely to become metabolically healthy. Community exercise may be an effective model for primary prevention of cardiovascular disease. PMID:25120373

  10. Metabolic pathways for the whole community.

    Science.gov (United States)

    Hanson, Niels W; Konwar, Kishori M; Hawley, Alyse K; Altman, Tomer; Karp, Peter D; Hallam, Steven J

    2014-07-22

    A convergence of high-throughput sequencing and computational power is transforming biology into information science. Despite these technological advances, converting bits and bytes of sequence information into meaningful insights remains a challenging enterprise. Biological systems operate on multiple hierarchical levels from genomes to biomes. Holistic understanding of biological systems requires agile software tools that permit comparative analyses across multiple information levels (DNA, RNA, protein, and metabolites) to identify emergent properties, diagnose system states, or predict responses to environmental change. Here we adopt the MetaPathways annotation and analysis pipeline and Pathway Tools to construct environmental pathway/genome databases (ePGDBs) that describe microbial community metabolism using MetaCyc, a highly curated database of metabolic pathways and components covering all domains of life. We evaluate Pathway Tools' performance on three datasets with different complexity and coding potential, including simulated metagenomes, a symbiotic system, and the Hawaii Ocean Time-series. We define accuracy and sensitivity relationships between read length, coverage and pathway recovery and evaluate the impact of taxonomic pruning on ePGDB construction and interpretation. Resulting ePGDBs provide interactive metabolic maps, predict emergent metabolic pathways associated with biosynthesis and energy production and differentiate between genomic potential and phenotypic expression across defined environmental gradients. This multi-tiered analysis provides the user community with specific operating guidelines, performance metrics and prediction hazards for more reliable ePGDB construction and interpretation. Moreover, it demonstrates the power of Pathway Tools in predicting metabolic interactions in natural and engineered ecosystems.

  11. Genome-based Modeling and Design of Metabolic Interactions in Microbial Communities.

    Science.gov (United States)

    Mahadevan, Radhakrishnan; Henson, Michael A

    2012-01-01

    Biotechnology research is traditionally focused on individual microbial strains that are perceived to have the necessary metabolic functions, or the capability to have these functions introduced, to achieve a particular task. For many important applications, the development of such omnipotent microbes is an extremely challenging if not impossible task. By contrast, nature employs a radically different strategy based on synergistic combinations of different microbial species that collectively achieve the desired task. These natural communities have evolved to exploit the native metabolic capabilities of each species and are highly adaptive to changes in their environments. However, microbial communities have proven difficult to study due to a lack of suitable experimental and computational tools. With the advent of genome sequencing, omics technologies, bioinformatics and genome-scale modeling, researchers now have unprecedented capabilities to analyze and engineer the metabolism of microbial communities. The goal of this review is to summarize recent applications of genome-scale metabolic modeling to microbial communities. A brief introduction to lumped community models is used to motivate the need for genome-level descriptions of individual species and their metabolic interactions. The review of genome-scale models begins with static modeling approaches, which are appropriate for communities where the extracellular environment can be assumed to be time invariant or slowly varying. Dynamic extensions of the static modeling approach are described, and then applications of genome-scale models for design of synthetic microbial communities are reviewed. The review concludes with a summary of metagenomic tools for analyzing community metabolism and an outlook for future research.

  12. Cryptic biodiversity in streams - a comparison of macroinvertebrate communities based on morphological and DNA barcode identifications

    Science.gov (United States)

    Aquatic ecologists and entomologists have long known that species-level identifications were difficult, if not impossible, for many larval macroinvertebrates collected in streams. This study describes macroinvertebrate (primarily insect) communities from five coastal streams dist...

  13. Progressive recovery of a tropical deforested stream community after a flash flood

    Directory of Open Access Journals (Sweden)

    Lucas Cerqueira Marques

    2013-06-01

    Full Text Available AIM: In this study, we evaluated and compared community attributes from a tropical deforested stream, located in a pasture area, in a period before (PRED I and three times after (POSD I, II, and III a flash flood, in order to investigate the existence of temporal modifications in community structure that suggests return to conditions previous to the flash flood. METHODS: Biota samples included algae, macrophytes, macroinvertebrates, and fish assemblages. Changes in stream physical structure we also evaluated. Similarity of the aquatic biota between pre and post-disturbance periods was examined by exploratory ordination, known as Non-Metric Multidimensional Scaling associated with Cluster Analysis, using quantitative and presence/absence Bray-Curtis similarity coefficients. Presence and absence data were used for multivariate correlation analysis (Relate Analysis in order to investigate taxonomic composition similarity of biota between pre and post-disturbance periods. RESULTS: Our results evidenced channel simplification and an expressive decrease in richness and abundance of all taxa right after the flood, followed by subsequent increases of these parameters in the next three samples, indicating trends towards stream community recovery. Bray-Curtis similarity coefficients evidenced a greater community structure disparity among the period right after the flood and the subsequent ones. Multivariate correlation analysis evidenced a greater correlation between macroinvertebrates and algae/macrophytes, demonstrating the narrow relation between their recolonization dynamics. CONCLUSIONS: Despite overall community structure tended to return to previous conditions, recolonization after the flood was much slower than that reported in literature. Finally, the remarkably high flood impact along with the slow recolonization could be a result of the historical presence of anthropic impacts in the region, such as siltation, riparian forest complete depletion

  14. A trait-based framework for stream algal communities.

    Science.gov (United States)

    Lange, Katharina; Townsend, Colin Richard; Matthaei, Christoph David

    2016-01-01

    The use of trait-based approaches to detect effects of land use and climate change on terrestrial plant and aquatic phytoplankton communities is increasing, but such a framework is still needed for benthic stream algae. Here we present a conceptual framework of morphological, physiological, behavioural and life-history traits relating to resource acquisition and resistance to disturbance. We tested this approach by assessing the relationships between multiple anthropogenic stressors and algal traits at 43 stream sites. Our "natural experiment" was conducted along gradients of agricultural land-use intensity (0-95% of the catchment in high-producing pasture) and hydrological alteration (0-92% streamflow reduction resulting from water abstraction for irrigation) as well as related physicochemical variables (total nitrogen concentration and deposited fine sediment). Strategic choice of study sites meant that agricultural intensity and hydrological alteration were uncorrelated. We studied the relationships of seven traits (with 23 trait categories) to our environmental predictor variables using general linear models and an information-theoretic model-selection approach. Life form, nitrogen fixation and spore formation were key traits that showed the strongest relationships with environmental stressors. Overall, FI (farming intensity) exerted stronger effects on algal communities than hydrological alteration. The large-bodied, non-attached, filamentous algae that dominated under high farming intensities have limited dispersal abilities but may cope with unfavourable conditions through the formation of spores. Antagonistic interactions between FI and flow reduction were observed for some trait variables, whereas no interactions occurred for nitrogen concentration and fine sediment. Our conceptual framework was well supported by tests of ten specific hypotheses predicting effects of resource supply and disturbance on algal traits. Our study also shows that investigating a

  15. Disentangling the influences of habitat structure and limnological predictors on stream fish communities of a coastal basin, southeastern Brazil

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    Fabio Cop Ferreira

    Full Text Available In stream environments habitat structure and limnological factors interact regulating patterns of energy and material transfer and affecting fish communities. In the coastal basins of Southeastern Brazil, limnological and structural characteristics differ between clear and blackwaters streams. The former have a diversity of substrate types, higher water velocities, and lower water conductivity, while the latter have sandy substrate, tea-colored and acidic waters, and low water velocities. In this study, we verified the relative importance of habitat structure and limnological variables in predicting patterns of variation in stream fish communities. Eight first to third order streams were sampled in the coastal plain of Itanhaém River basin. We captured 34 fish species and verified that community structure was influenced by physical habitat and limnology, being the former more important. A fraction of the variation could not be totally decomposed, and it was assigned to the joint influence of limnology and habitat structure. Some species that were restricted to blackwater streams, may have physiological and behavioral adaptations to deal with the lower pH levels. When we examined only the clearwater streams, all the explained variation in fish community composition was assigned to structural factors, which express specific preferences for different types of habitats.

  16. The world's richest tadpole communities show functional redundancy and low functional diversity: ecological data on Madagascar's stream-dwelling amphibian larvae

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    Randrianiaina Roger-Daniel

    2010-05-01

    Full Text Available Abstract Background Functional diversity illustrates the range of ecological functions in a community. It allows revealing the appearance of functional redundancy in communities and processes of community assembly. Functional redundancy illustrates the overlap in ecological functions of community members which may be an indicator of community resilience. We evaluated patterns of species richness, functional diversity and functional redundancy on tadpole communities in rainforest streams in Madagascar. This habitat harbours the world's most species-rich stream tadpole communities which are due to their occurrence in primary habitat of particular interest for functional diversity studies. Results Species richness of tadpole communities is largely determined by characteristics of the larval habitat (stream structure, not by adult habitat (forest structure. Species richness is positively correlated with a size-velocity gradient of the streams, i.e. communities follow a classical species-area relationship. While widely observed for other taxa, this is an unusual pattern for anuran larvae which usually is expected to be hump-shaped. Along the species richness gradient, we quantified functional diversity of all communities considering the similarity and dissimilarity of species in 18 traits related to habitat use and foraging. Especially species-rich communities were characterised by an overlap of species function, i.e. by functional redundancy. By comparing the functional diversity of the observed communities with functional diversity of random assemblages, we found no differences at low species richness level, whereas observed species-rich communities have lower functional diversity than respective random assemblages. Conclusions We found functional redundancy being a feature of communities also in primary habitat, what has not been shown before using such a continuous measure. The observed species richness dependent pattern of low functional

  17. Effects of watershed and in-stream liming on macroinvertebrate communities in acidified tributaries to an Adirondack lake

    Science.gov (United States)

    George, Scott D.; Baldigo, Barry P.; Lawrence, Gregory B.; Fuller, Randall L.

    2018-01-01

    Liming techniques are being explored as a means to accelerate the recovery of aquatic biota from decades of acid deposition in many regions. The preservation or restoration of native sportfish populations has typically been the impetus for liming programs, and as such, less attention has been given to its effects on other biological assemblages such as macroinvertebrates. Furthermore, the differing effects of various lime application strategies such as in-stream and watershed applications are not well understood. In 2012, a program was initiated using in-stream and aerial (whole-watershed) liming to improve water quality and Brook Trout (Salvelinus fontinalis) recruitment in three acidified tributaries of a high-elevation Adirondack lake in New York State. Concurrently, macroinvertebrates were sampled annually between 2013 and 2016 at 3 treated sites and 3 untreated reference sites to assess the effects of each liming technique on this community. Despite improvements in water chemistry in all three limed streams, our results generally suggest that neither liming technique succeeded in improving the condition of macroinvertebrate communities. The watershed application caused an immediate and unsustained decrease in the density of macroinvertebrates and increase in the proportion of sensitive taxa. These changes were driven primarily by a one-year 71 percent reduction of the acid-tolerant Leuctra stoneflies and likely represent an initial chemistry shock from the lime application rather than a recovery response. The in-stream applications appeared to reduce the density of macroinvertebrates, particularly in one stream where undissolved lime covered the natural substrate. The close proximity of our study sites to the in-stream application points (50 and 1230 m) may partly explain these negative effects. Our results are consistent with prior studies of in-stream liming which indicate that this technique often fails to restore macroinvertebrate communities to a pre

  18. Seasonal Changes in Microbial Community Structure in Freshwater Stream Sediment in a North Carolina River Basin

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    John P. Bucci

    2014-01-01

    Full Text Available This study examined seasonal differences in microbial community structure in the sediment of three streams in North Carolina’s Neuse River Basin. Microbes that reside in sediment are at the base of the food chain and have a profound influence on the health of freshwater stream environments. Terminal-Restriction Fragment Length Polymorphism (T-RFLP, molecular fingerprint analysis of 16S rRNA genes was used to examine the diversity of bacterial species in stream sediment. Sediment was sampled in both wet and dry seasons from an agricultural (Bear, mixed urban (Crabtree and forested (Marks Creek, and the microbiota examined. Gamma, Alpha and Beta proteobacteria were prevalent species of microbial taxa represented among all sites. Actinobacteria was the next most prevalent species observed, with greater occurrence in dry compared to the wet season. Discernable clustering was observed of Marks and Bear Creek samples collected during the wetter period (September–April, which corresponded with a period of higher precipitation and cooler surface water temperatures. Although not statistically significant, microbial community structure appeared different between season (ANOSIM, R = 0.60; p < 0.10. Principal components analysis confirmed this pattern and showed that the bacterial groups were separated by wet and dry seasonal periods. These results suggest seasonal differences among the microbial community structure in sediment of freshwater streams and that these communities may respond to changes in precipitation during wetter periods.

  19. Stream macroinvertebrate communities across a gradient of natural gas development in the Fayetteville Shale.

    Science.gov (United States)

    Johnson, Erica; Austin, Bradley J; Inlander, Ethan; Gallipeau, Cory; Evans-White, Michelle A; Entrekin, Sally

    2015-10-15

    Oil and gas extraction in shale plays expanded rapidly in the U.S. and is projected to expand globally in the coming decades. Arkansas has doubled the number of gas wells in the state since 2005 mostly by extracting gas from the Fayetteville Shale with activity concentrated in mixed pasture-deciduous forests. Concentrated well pads in close proximity to streams could have adverse effects on stream water quality and biota if sedimentation associated with developing infrastructure or contamination from fracturing fluid and waste occurs. Cumulative effects of gas activity and local habitat conditions on macroinvertebrate communities were investigated across a gradient of gas well activity (0.2-3.6 wells per km(2)) in ten stream catchments in spring 2010 and 2011. In 2010, macroinvertebrate density was positively related to well pad inverse flowpath distance from streams (r=0.84, pgas activity close to streams. However, stream water turbidity (r=0.69, p=0.02) and chlorophyll a (r=0.89, pgas well activities. In 2011, a year with record spring flooding, a different pattern emerged where mayfly density (p=0.74, p=0.01) and mayfly, stonefly, and caddisfly richness (r=0.78, p=0.008) increased in streams with greater well density and less silt cover. Hydrology and well pad placement in a catchment may interact to result in different relationships between biota and catchment activity between the two sample years. Our data show evidence of different macroinvertebrate communities expressed in catchments with different levels of gas activity that reinforce the need for more quantitative analyses of cumulative freshwater-effects from oil and gas development. Copyright © 2015 Elsevier B.V. All rights reserved.

  20. Downstream changes in spring-fed stream invertebrate communities: the effect of increased temperature range?

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    Russell G. DEATH

    2011-09-01

    Full Text Available Reduced thermal amplitude has been highlighted as a limiting factor for aquatic invertebrate diversity in springs. Moving downstream water temperature range increases and invertebrate richness is expected to change accordingly. In the present study temperature patterns were investigated in seven spring-fed streams, between April 2001 and November 2002, and compared to five run-off-fed streams to assess the degree of crenic temperature constancy. Temperature and physico-chemical characteristics of the water, and food resource levels were measured, and the invertebrate fauna collected at 4 distances (0, 100, 500 m and 1 km from seven springs in the North and South Islands of New Zealand. Temperature variability was greater for run-off-fed streams than for springs, and increased in the spring-fed streams with distance from the source. Periphyton and physico-chemical characteristics of the water did not change markedly over the 1 km studied, with the exception of water velocity and organic matter biomass, which increased and decreased, respectively. The rate of increase in temperature amplitude differed greatly for the studied springs, probably being affected by flow, altitude, and the number and type of tributaries (i.e., spring- or run-off-fed joining the spring-fed stream channel. Longitudinal changes in the number and evenness of invertebrate taxa were positively correlated to thermal amplitude (rs = 0.8. Moving downstream, invertebrate communities progressively incorporated taxa with higher mobility and taxa more common in nearby run-off-fed streams. Chironomids and non-insect taxa were denser at the sources. Chironomid larvae also numerically dominated communities 100 and 500 m downstream from the sources, together with Pycnocentria spp. and Zelolessica spp., while taxa such as Hydora sp. and Hydraenidae beetles, the mayflies Deleatidium spp. and Coloburiscus humeralis, and the Trichoptera Pycnocentrodes spp., all had greater abundances 1 km

  1. Environment and Spatial Influences on Aquatic Insect Communities in Cerrado Streams: the Relative Importance of Conductivity, Altitude, and Conservation Areas.

    Science.gov (United States)

    Godoy, B S; Queiroz, L L; Lodi, S; Oliveira, L G

    2017-04-01

    The aquatic insect community is an important element for stream functionality and diversity, but the effects of altitude and conservation areas on the aquatic insect community have been poorly explored in neotropical ecozone. The lack of studies about the relative importance of space and environment on community structure is another obstacle within aquatic insect ecology, which precludes the inclusion of these studies in more current frameworks, like the metacommunity dynamics. We evaluated the relationship between the aquatic insect community structure at 19 streams in the Brazilian Cerrado and spatial and environmental variables, namely geographical distance among sites, stream altitude, chemical variables, and environmental protection areas. We partitioned the variance explained by spatial and environmental components using a partial redundancy analysis. The environment exhibited a strong spatial structure for abundance and number of genera, increasing these community parameters with elevated water conductivity. Only community composition had a large unexplained portion of variance, with a small portion constrained by environmental (altitude and conductivity) and spatial factors. A relevant point in the result was the streams with high conductivity were located outside of the conservation areas. These results suggest that the relationship between number of genera and abundance with environmental conditions is always associated with spatial configuration of streams. Our study shows that altitude is an important determinant of community structure, as it exerts indirect influences, and electrical conductivity directly determines community composition, and that some national parks may be inefficient in maintaining the diversity of aquatic insects in the Cerrado region.

  2. Macroinvertebrate community responses to a dewatering disturbance gradient in a restored stream

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    J. D. Muehlbauer

    2011-06-01

    Full Text Available Dewatering disturbances are common in aquatic systems and represent a relatively untapped field of disturbance ecology, yet studying dewatering events along gradients in non-dichotomous (i.e. wet/dry terms is often difficult. Because many stream restorations can essentially be perceived as planned hydrologic manipulations, such systems can make ideal test-cases for understanding processes of hydrological disturbance. In this study we used an experimental drawdown in a 440 ha stream/wetland restoration site to assess aquatic macroinvertebrate community responses to dewatering and subsequent rewetting. The geomorphic nature of the site and the design of the restoration allowed dewatering to occur predictably along a gradient and decoupled the hydrologic response from any geomorphic (i.e. habitat heterogeneity effects. In the absence of such heterogeneous habitat refugia, reach-scale wetted perimeter and depth conditions exerted a strong control on community structure. The community exhibited an incremental response to dewatering severity over the course of this disturbance, which was made manifest not as a change in community means but as an increase in community variability, or dispersion, at each site. The dewatering also affected inter-species abundance and distributional patterns, as dewatering and rewetting promoted alternate species groups with divergent habitat tolerances. Finally, our results indicate that rapid rewetting – analogous to a hurricane breaking a summer drought – may represent a recovery process rather than an additional disturbance and that such processes, even in newly restored systems, may be rapid.

  3. Ecological health in the Nation's streams

    Science.gov (United States)

    Carlisle, Daren M.; Woodside, Michael D.

    2013-01-01

    Aquatic biological communities, which are collections of organisms, are a direct measure of stream health because they indicate the ability of a stream to support life. This fact sheet highlights selected findings of a national assessment of stream health by the National Water-Quality Assessment (NAWQA) Program of the U.S. Geological Survey (USGS). The assessment was unique in that it integrated the condition of three biological communities—algae, macroinvertebrates, and fish—as well as measures of streamflow modification, pesticides, nutrients, and other factors. At least one biological community was altered at 83 percent of assessed streams, and the occurrence of altered communities was highest in urban streams. Streamflows were modified at 86 percent of assessed streams, and increasing severity of streamflow modification was associated with increased occurrence of altered biological communities. Agricultural and urban land use in watersheds may contribute pesticides and nutrients to stream waters, and increasing concentrations of these chemicals were associated with increased occurrence of altered biological communities.

  4. Amphidromy links a newly documented fish community of continental Australian streams, to oceanic islands of the west Pacific.

    Directory of Open Access Journals (Sweden)

    Paul A Thuesen

    Full Text Available BACKGROUND: Indo-Pacific high island streams experience extreme hydrological variation, and are characterised by freshwater fish species with an amphidromous life history. Amphidromy is a likely adaptation for colonisation of island streams following stochastic events that lead to local extirpation. In the Wet Tropics of north-eastern Australia, steep coastal mountain streams share similar physical characteristics to island systems. These streams are poorly surveyed, but may provide suitable habitat for amphidromous species. However, due to their ephemeral nature, common non-diadromous freshwater species of continental Australia are unlikely to persist. Consequently, we hypothesise that coastal Wet Tropics streams are faunally more similar, to distant Pacific island communities, than to nearby faunas of large continental rivers. METHODS/PRINCIPAL FINDINGS: Surveys of coastal Wet Tropics streams recorded 26 species, 10 of which are first records for Australia, with three species undescribed. This fish community is unique in an Australian context in that it contains mostly amphidromous species, including sicydiine gobies of the genera Sicyopterus, Sicyopus, Smilosicyopus and Stiphodon. Species presence/absence data of coastal Wet Tropics streams were compared to both Wet Tropics river networks and Pacific island faunas. ANOSIM indicated the fish fauna of north-eastern Australian coastal streams were more similar to distant Pacific islands (R = 0.76, than to nearby continental rivers (R = 0.98. MAIN CONCLUSIONS/SIGNIFICANCE: Coastal Wet Tropics streams are faunally more similar to distant Pacific islands (79% of species shared, than to nearby continental fauna due to two factors. First, coastal Wet Tropics streams lack many non-diadromous freshwater fish which are common in nearby large rivers. Second, many amphidromous species found in coastal Wet Tropics streams and Indo-Pacific islands remain absent from large rivers of the Wet Tropics

  5. Re-Meandering of Lowland Streams

    DEFF Research Database (Denmark)

    Pedersen, Morten Lauge; Kristensen, Klaus Kevin; Friberg, Nikolai

    2014-01-01

    We evaluated the restoration of physical habitats and its influence on macroinvertebrate community structure in 18 Danish lowland streams comprising six restored streams, six streams with little physical alteration and six channelized streams. We hypothesized that physical habitats...... and macroinvertebrate communities of restored streams would resemble those of natural streams, while those of the channelized streams would differ from both restored and near-natural streams. Physical habitats were surveyed for substrate composition, depth, width and current velocity. Macroinvertebrates were sampled...... along 100 m reaches in each stream, in edge habitats and in riffle/run habitats located in the center of the stream. Restoration significantly altered the physical conditions and affected the interactions between stream habitat heterogeneity and macroinvertebrate diversity. The substrate in the restored...

  6. Reduced Flexibility Associated with Metabolic Syndrome in Community-Dwelling Elders

    Science.gov (United States)

    Chang, Ke-Vin; Hung, Chen-Yu; Li, Chia-Ming; Lin, Yu-Hung; Wang, Tyng-Guey; Tsai, Keh-Sung; Han, Der-Sheng

    2015-01-01

    Background The ageing process may lead to reductions in physical fitness, a known risk factor in the development of metabolic syndrome. The purpose of the current study was to evaluate cross-sectional and combined associations of metabolic syndrome with body composition and physical fitness in a community based geriatric population. Methods A total of 628 community-dwelling elders attending a geriatric health examination were enrolled in the study. The diagnosis of metabolic syndrome was based on the modified National Cholesterol Education Program Adult Treatment Panel III (NCEP ATP III) criterion with Asian cutoff of waist girth was adopted in this study. Body composition was obtained using bioimpedance analysis, and physical fitness was evaluated through the measurement of muscle strength (handgrip force), lower extremity muscle endurance (sit-to-stand test), flexibility (sit-and-reach test), and cardiorespiratory endurance (2-minute step test). Multivariable logistic regression and correlation analysis were performed to determine the association of metabolic syndrome with body composition and functionality variables. Results Metabolic syndrome was associated with increased skeletal muscle index (SMI) (odds ratio (OR), 1.61, 95% confidence interval (CI), 1.25–2.07) and decreased flexibility (OR, 0.97, 95% CI, 0.95–0.99) compared with those without metabolic syndrome. When body mass index was accounted for in the analysis, the association of SMI with metabolic syndrome was reduced. Waist circumference was positively correlated with SMI but negatively correlated with flexibility, whereas high density lipoprotein was positively correlated with flexibility but negatively correlated with SMI. Conclusion Reduced flexibility was positively associated with metabolic syndrome independent of age, gender, body composition, and functionality measurements in a community based geriatric population. Significant associations between metabolic syndrome with muscle strength

  7. Reduced flexibility associated with metabolic syndrome in community-dwelling elders.

    Directory of Open Access Journals (Sweden)

    Ke-Vin Chang

    Full Text Available The ageing process may lead to reductions in physical fitness, a known risk factor in the development of metabolic syndrome. The purpose of the current study was to evaluate cross-sectional and combined associations of metabolic syndrome with body composition and physical fitness in a community based geriatric population.A total of 628 community-dwelling elders attending a geriatric health examination were enrolled in the study. The diagnosis of metabolic syndrome was based on the modified National Cholesterol Education Program Adult Treatment Panel III (NCEP ATP III criterion with Asian cutoff of waist girth was adopted in this study. Body composition was obtained using bioimpedance analysis, and physical fitness was evaluated through the measurement of muscle strength (handgrip force, lower extremity muscle endurance (sit-to-stand test, flexibility (sit-and-reach test, and cardiorespiratory endurance (2-minute step test. Multivariable logistic regression and correlation analysis were performed to determine the association of metabolic syndrome with body composition and functionality variables.Metabolic syndrome was associated with increased skeletal muscle index (SMI (odds ratio (OR, 1.61, 95% confidence interval (CI, 1.25-2.07 and decreased flexibility (OR, 0.97, 95% CI, 0.95-0.99 compared with those without metabolic syndrome. When body mass index was accounted for in the analysis, the association of SMI with metabolic syndrome was reduced. Waist circumference was positively correlated with SMI but negatively correlated with flexibility, whereas high density lipoprotein was positively correlated with flexibility but negatively correlated with SMI.Reduced flexibility was positively associated with metabolic syndrome independent of age, gender, body composition, and functionality measurements in a community based geriatric population. Significant associations between metabolic syndrome with muscle strength and cardiorespiratory fitness in the

  8. Macroinvertebrate Community Response to the Elimination of Concentrated Feedlot Runoff to a Headwater Stream

    Science.gov (United States)

    Snitgen, J. L.; Moren, M. M.

    2005-05-01

    During rainfall and snow melt events, a first order, cold-water stream was receiving varying amounts of liquefied manure from a concentrated feed lot. Stream restoration efforts included the implementation of best management practices to prevent further discharge of the water/manure mixture to the stream. Physical, chemical and biological data were collected pre-construction and two years post-construction of the containment system at a fixed location downstream of the feedlot. Hilsenhoff Biotic Index scores improved significantly, from 6.79 or "Fairly Poor" before the installation of the manure containment system, to 5.28 or "Good" after the installation of the manure containment system. Taxa richness improved from 25 to 34 and the EPT score improved from 0 to 4. Key words: macroinvertebrate, community response, manure, feedlot runoff, stream restoration

  9. COMMUNITY SCALE STREAM TAXA SENSITIVITIES TO DIFFERENT COMPOSITIONS OF EXCESS TOTAL DISSOLVED SOLIDS

    Science.gov (United States)

    Model stream chronic dosing studies (42 d) were conducted with three total dissolved solids (TDS) recipes. The recipes differed in composition of major ions. Community scale emergence was compared with single-species responses conducted simultaneously using the whole effluent tox...

  10. Metabolic and demographic feedbacks shape the emergent spatial structure and function of microbial communities.

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    Sylvie Estrela

    Full Text Available Microbes are predominantly found in surface-attached and spatially structured polymicrobial communities. Within these communities, microbial cells excrete a wide range of metabolites, setting the stage for interspecific metabolic interactions. The links, however, between metabolic and ecological interactions (functional relationships, and species spatial organization (structural relationships are still poorly understood. Here, we use an individual-based modelling framework to simulate the growth of a two-species surface-attached community where food (resource is traded for detoxification (service and investigate how metabolic constraints of individual species shape the emergent structural and functional relationships of the community. We show that strong metabolic interdependence drives the emergence of mutualism, robust interspecific mixing, and increased community productivity. Specifically, we observed a striking and highly stable emergent lineage branching pattern, generating a persistent lineage mixing that was absent when the metabolic exchange was removed. These emergent community properties are driven by demographic feedbacks, such that aid from neighbouring cells directly enhances focal cell growth, which in turn feeds back to neighbour fecundity. In contrast, weak metabolic interdependence drives conflict (exploitation or competition, and in turn greater interspecific segregation. Together, these results support the idea that species structural and functional relationships represent the net balance of metabolic interdependencies.

  11. Community structure, life histories and secondary production of stoneflies in two small mountain streams with different degree of forest cover

    Directory of Open Access Journals (Sweden)

    Pavel Beracko

    2015-10-01

    Full Text Available Our study examines community structure and nymphal biology (life cycles and secondary production of stoneflies in two adjacent mountain streams with different degree of forest cover in the Prosiečanka River Basin (Chočské Vrchy Mts., West Carpathians. One of the streams has non-forested catchment, converted to meadows and pastures, while the other one has catchment with 60% covered by spruce forest. Differences in forest cover and in thermal regime of the streams were reflected by the difference of stonefly communities at their structural and functional level. Species Nemoura cinerea and Leuctra aurita created stonefly assemblage in non-forested stream, whereas Nemoura cinerea also occurred in naturally forested stream together with species Leuctra armata, Leuctra nigra, Leuctra prima, Siphonoperla neglecta and Arcynopteryx dichroa. All examined species had maximally annual life cycle and in eudominant species Nemoura cinerea one month shift was found in nymphal hatching and adult emergence between streams. Total secondary production of stoneflies in undisturbed stream (126.46 mg DW m-2 y-1 was more than two times higher than the production in non-forested stream (47.39 mg DW m-2 y-1. 

  12. Responses of primary production, leaf litter decomposition and associated communities to stream eutrophication

    International Nuclear Information System (INIS)

    Dunck, Bárbara; Lima-Fernandes, Eva; Cássio, Fernanda; Cunha, Ana; Rodrigues, Liliana; Pascoal, Cláudia

    2015-01-01

    We assessed the eutrophication effects on leaf litter decomposition and primary production, and on periphytic algae, fungi and invertebrates. According to the subsidy-stress model, we expected that when algae and decomposers were nutrient limited, their activity and diversity would increase at moderate levels of nutrient enrichment, but decrease at high levels of nutrients, because eutrophication would lead to the presence of other stressors and overwhelm the subsidy effect. Chestnut leaves (Castanea sativa Mill) were enclosed in mesh bags and immersed in five streams of the Ave River basin (northwest Portugal) to assess leaf decomposition and colonization by invertebrates and fungi. In parallel, polyethylene slides were attached to the mesh bags to allow colonization by algae and to assess primary production. Communities of periphytic algae and decomposers discriminated the streams according to the trophic state. Primary production decomposition and biodiversity were lower in streams at both ends of the trophic gradient. - Highlights: • Algae and decomposers discriminated the streams according to the eutrophication level. • Primary production and litter decomposition are stimulated by moderate eutrophication. • Biodiversity and process rates were reduced in highly eutrophic streams. • Subsidy-stress model explained biodiversity and process rates under eutrophication. - Rates of leaf litter decomposition, primary production and richness of periphytic algae, fungi and invertebrates were lower in streams at both ends of the trophic gradient

  13. Community health orientation of Indian Journal of Endocrinology and Metabolism: A bibliometric analysis of Indian Journal of Endocrinology and Metabolism

    Science.gov (United States)

    Kaushal, Kanica; Kalra, Sanjay

    2015-01-01

    Background: Endocrine and metabolic diseases especially diabetes have become focus areas for public health professionals. Indian Journal of Endocrinology and Metabolism (IJEM), a publication of Endocrine Society of India, is a peer-reviewed online journal, which covers technical and clinical studies related to health, ethical and social issues in field of diabetes, endocrinology and metabolism. This bibliometric analysis assesses the journal from a community health perspective. Materials and Methods: Every article published in IJEM over a period of 4 years (2011–2014) was accessed to review coverage of community health in the field of endocrinology. Results: Seven editorials, 30 review articles, 41 original articles, 12 brief communications, 20 letter to editors, 4 articles on guidelines and 2 in the section “endocrinology and gender” directly or indirectly dealt with community health aspects of endocrinology. Together these amounted to 17% of all articles published through these 4 years. There were 14 articles on general, 60 pertaining to pancreas and diabetes, 10 on thyroid, 7 on pituitary/adrenal/gonads, 21 on obesity and metabolism and 4 on parathyroid and bone; all community medicine related. Conclusion: Community health is an integral part of the modern endocrinology diabetology and metabolism practice and it received adequate journal space during the last 4 years. The coverage is broad based involving all the major endocrine disorders. PMID:25932398

  14. Community health orientation of Indian Journal of Endocrinology and Metabolism: A bibliometric analysis of Indian Journal of Endocrinology and Metabolism

    Directory of Open Access Journals (Sweden)

    Kanica Kaushal

    2015-01-01

    Full Text Available Background: Endocrine and metabolic diseases especially diabetes have become focus areas for public health professionals. Indian Journal of Endocrinology and Metabolism (IJEM, a publication of Endocrine Society of India, is a peer-reviewed online journal, which covers technical and clinical studies related to health, ethical and social issues in field of diabetes, endocrinology and metabolism. This bibliometric analysis assesses the journal from a community health perspective. Materials and Methods: Every article published in IJEM over a period of 4 years (2011-2014 was accessed to review coverage of community health in the field of endocrinology. Results: Seven editorials, 30 review articles, 41 original articles, 12 brief communications, 20 letter to editors, 4 articles on guidelines and 2 in the section "endocrinology and gender" directly or indirectly dealt with community health aspects of endocrinology. Together these amounted to 17% of all articles published through these 4 years. There were 14 articles on general, 60 pertaining to pancreas and diabetes, 10 on thyroid, 7 on pituitary/adrenal/gonads, 21 on obesity and metabolism and 4 on parathyroid and bone; all community medicine related. Conclusion: Community health is an integral part of the modern endocrinology diabetology and metabolism practice and it received adequate journal space during the last 4 years. The coverage is broad based involving all the major endocrine disorders.

  15. Do biofilm communities respond to the chemical signatures of fracking? A test involving streams in North-central Arkansas.

    Science.gov (United States)

    Johnson, Wilson H; Douglas, Marlis R; Lewis, Jeffrey A; Stuecker, Tara N; Carbonero, Franck G; Austin, Bradley J; Evans-White, Michelle A; Entrekin, Sally A; Douglas, Michael E

    2017-02-03

    Unconventional natural gas (UNG) extraction (fracking) is ongoing in 29 North American shale basins (20 states), with ~6000 wells found within the Fayetteville shale (north-central Arkansas). If the chemical signature of fracking is detectable in streams, it can be employed to bookmark potential impacts. We evaluated benthic biofilm community composition as a proxy for stream chemistry so as to segregate anthropogenic signatures in eight Arkansas River catchments. In doing so, we tested the hypothesis that fracking characteristics in study streams are statistically distinguishable from those produced by agriculture or urbanization. Four tributary catchments had UNG-wells significantly more dense and near to our sampling sites and were grouped as 'potentially-impacted catchment zones' (PICZ). Four others were characterized by significantly larger forested area with greater slope and elevation but reduced pasture, and were classified as 'minimally-impacted' (MICZ). Overall, 46 bacterial phyla/141 classes were identified, with 24 phyla (52%) and 54 classes (38%) across all samples. PICZ-sites were ecologically more variable than MICZ-sites, with significantly greater nutrient levels (total nitrogen, total phosphorous), and elevated Cyanobacteria as bioindicators that tracked these conditions. PICZ-sites also exhibited elevated conductance (a correlate of increased ion concentration) and depressed salt-intolerant Spartobacteria, suggesting the presence of brine as a fracking effect. Biofilm communities at PICZ-sites were significantly less variable than those at MICZ-sites. Study streams differed by Group according to morphology, land use, and water chemistry but not in biofilm community structure. Those at PICZ-sites covaried according to anthropogenic impact, and were qualitatively similar to communities found at sites disturbed by fracking. The hypothesis that fracking signatures in study streams are distinguishable from those produced by other anthropogenic effects

  16. Stressor-Response Models Relating Nutrient Enrichment to Algal Communities in Pacific Northwest Streams and Rivers

    Science.gov (United States)

    Sobota, D. J.; Hubler, S.; Paul, M. J.; Labiosa, R.

    2015-12-01

    Excessive algal growth in streams and rivers from nutrient enrichment can cause costly human health and environmental problems. As part of the US Environmental Protection Agency's Nutrient Scientific Technical Exchange Partnership and Support (N-STEPS) program, we have been developing stressor-response (S-R) models relating nutrients to attached algal (periphyton) communities to help prioritize monitoring for water quality impairments in Oregon (Pacific Northwest, USA) streams and rivers. Existing data from the state and neighboring states were compiled and standardized from the Oregon Department of Environmental Quality, US Environmental Protection Agency, and the US Geological Survey. To develop S-R models, algal community and biomass metrics were compared with nitrogen (N) and phosphorus (P) concentration data, including total, dissolved, and inorganic forms of these nutrients. In total, 928 paired algal-nutrient samples were compiled from the 8 Level-III Ecoregions occurring in Oregon. Relationships between algal biomass metrics and nutrient concentrations were weak, with only ash-free dry mass and standing stock of chlorophyll a showing slight positive relationships across gradients of total N and soluble reactive P concentrations, respectively. In contrast, metrics describing algal community composition, including percent diatoms and abundance of nutrient-sensitive species, showed very strong nonlinear relationships with total N or P concentrations. This suggests that data describing algal community composition can help identify specific nutrient stressors across environmentally-diverse streams and rivers in the Pacific Northwest. Future analyses will examine if nutrient-algal S-R models vary across different hydrological, physiographical, and ecological settings in the region.

  17. Relationships among exceedences of metals criteria, the results of ambient bioassays, and community metrics in mining-impacted streams.

    Science.gov (United States)

    Griffith, Michael B; Lazorchak, James M; Herlihy, Alan T

    2004-07-01

    If bioassessments are to help diagnose the specific environmental stressors affecting streams, a better understanding is needed of the relationships between community metrics and ambient criteria or ambient bioassays. However, this relationship is not simple, because metrics assess responses at the community level of biological organization, while ambient criteria and ambient bioassays assess or are based on responses at the individual level. For metals, the relationship is further complicated by the influence of other chemical variables, such as hardness, on their bioavailability and toxicity. In 1993 and 1994, U.S. Environmental Protection Agency (U.S. EPA) conducted a Regional Environmental Monitoring and Assessment Program (REMAP) survey on wadeable streams in Colorado's (USA) Southern Rockies Ecoregion. In this ecoregion, mining over the past century has resulted in metals contamination of streams. The surveys collected data on fish and macroinvertebrate assemblages, physical habitat, and sediment and water chemistry and toxicity. These data provide a framework for assessing diagnostic community metrics for specific environmental stressors. We characterized streams as metals-affected based on exceedence of hardness-adjusted criteria for cadmium, copper, lead, and zinc in water; on water toxicity tests (48-h Pimephales promelas and Ceriodaphnia dubia survival); on exceedence of sediment threshold effect levels (TELs); or on sediment toxicity tests (7-d Hyalella azteca survival and growth). Macroinvertebrate and fish metrics were compared among affected and unaffected sites to identify metrics sensitive to metals. Several macroinvertebrate metrics, particularly richness metrics, were less in affected streams, while other metrics were not. This is a function of the sensitivity of the individual metrics to metals effects. Fish metrics were less sensitive to metals because of the low diversity of fish in these streams.

  18. Ocean acidification alters early successional coral reef communities and their rates of community metabolism.

    Directory of Open Access Journals (Sweden)

    Sam H C Noonan

    Full Text Available Ocean acidification is expected to alter community composition on coral reefs, but its effects on reef community metabolism are poorly understood. Here we document how early successional benthic coral reef communities change in situ along gradients of carbon dioxide (CO2, and the consequences of these changes on rates of community photosynthesis, respiration, and light and dark calcification. Ninety standardised benthic communities were grown on PVC tiles deployed at two shallow-water volcanic CO2 seeps and two adjacent control sites in Papua New Guinea. Along the CO2 gradient, both the upward facing phototrophic and the downward facing cryptic communities changed in their composition. Under ambient CO2, both communities were dominated by calcifying algae, but with increasing CO2 they were gradually replaced by non-calcifying algae (predominantly green filamentous algae, cyanobacteria and macroalgae, which increased from ~30% to ~80% cover. Responses were weaker in the invertebrate communities, however ascidians and tube-forming polychaetes declined with increasing CO2. Differences in the carbonate chemistry explained a far greater amount of change in communities than differences between the two reefs and successional changes from five to 13 months, suggesting community successions are established early and are under strong chemical control. As pH declined from 8.0 to 7.8, rates of gross photosynthesis and dark respiration of the 13-month old reef communities (upper and cryptic surfaces combined significantly increased by 10% and 20%, respectively, in response to altered community composition. As a consequence, net production remained constant. Light and dark calcification rates both gradually declined by 20%, and low or negative daily net calcification rates were observed at an aragonite saturation state of <2.3. The study demonstrates that ocean acidification as predicted for the end of this century will strongly alter reef communities, and

  19. Shifting stream planform state decreases stream productivity yet increases riparian animal production

    Science.gov (United States)

    Venarsky, Michael P.; Walters, David M.; Hall, Robert O.; Livers, Bridget; Wohl, Ellen

    2018-01-01

    In the Colorado Front Range (USA), disturbance history dictates stream planform. Undisturbed, old-growth streams have multiple channels and large amounts of wood and depositional habitat. Disturbed streams (wildfires and logging production, emerging aquatic insect flux, and riparian spider biomass. Organic matter and macroinvertebrate production did not differ among sites per unit area (m−2), but values were 2 ×–21 × higher in undisturbed reaches per unit of stream valley (m−1 valley) because total stream area was higher in undisturbed reaches. Insect emergence was similar among streams at the per unit area and per unit of stream valley. However, rescaling insect emergence to per meter of stream bank showed that the emerging insect biomass reaching the stream bank was lower in undisturbed sites because multi-channel reaches had 3 × more stream bank than single-channel reaches. Riparian spider biomass followed the same pattern as emerging aquatic insects, and we attribute this to bottom-up limitation caused by the multi-channeled undisturbed sites diluting prey quantity (emerging insects) reaching the stream bank (riparian spider habitat). These results show that historic landscape disturbances continue to influence stream and riparian communities in the Colorado Front Range. However, these legacy effects are only weakly influencing habitat-specific function and instead are primarily influencing stream–riparian community productivity by dictating both stream planform (total stream area, total stream bank length) and the proportional distribution of specific habitat types (pools vs riffles).

  20. Endogenous and exogenous control of ecosystem function: N cycling in headwater streams

    Energy Technology Data Exchange (ETDEWEB)

    Mulholland, Patrick J [ORNL; Valett, H. Maurice [Virginia Polytechnic Institute and State University (Virginia Tech); Thomas, Steve [University of Nebraska; Webster, Jackson [Virginia Polytechnic Institute and State University (Virginia Tech); Dahm, Cliff [University of New Mexico, Albuquerque; Fellows, Christine [Griffith University, Nathan, Queensland, Australia; Crenshaw, Chelsea [University of New Mexico, Albuquerque; Peterson, Chris G. [Loyola University

    2008-01-01

    Allochthonous inputs act as resource subsidies to many ecosystems, where they exert strong influences on metabolism and material cycling. At the same time, metabolic theory proposes endogenous thermal control independent of resource supply. To address the relative importance of exogenous and endogenous influences, we quantified spatial and temporal variation in ecosystem metabolism and nitrogen (N) uptake using seasonal releases of {sup 15}N as nitrate in six streams differing in riparian-stream interaction and metabolic character. Nitrate removal was quantified using a nutrient spiraling approach based on measurements of downstream decline in {sup 15}N flux. Respiration (R) and gross primary production (GPP) were measured with whole-stream diel oxygen budgets. Uptake and metabolism metrics were addressed as z scores relative to site means to assess temporal variation. In open-canopied streams, areal uptake (U; {micro}g N {center_dot} m{sup -2} {center_dot} s{sup -1}) was closely related to GPP, metabolic rates increased with temperature, and R was accurately predicted by metabolic scaling relationships. In forested streams, N spiraling was not related to GPP; instead, uptake velocity (v{sub f}; mm/s) was closely related to R. In contrast to open-canopied streams, N uptake and metabolic activity were negatively correlated to temperature and poorly described by scaling laws. We contend that streams differ along a gradient of exogenous and endogenous control that relates to the relative influences of resource subsidies and in-stream energetics as determinants of seasonal patterns of metabolism and N cycling. Our research suggests that temporal variation in the propagation of ecological influence between adjacent systems generates phases when ecosystems are alternatively characterized as endogenously and exogenously controlled.

  1. Endogenous and exogenous control of ecosystem function: N cycling in headwater streams.

    Science.gov (United States)

    Valett, H M; Thomas, S A; Mulholland, P J; Webster, J R; Dahm, C N; Fellows, C S; Crenshaw, C L; Peterson, C G

    2008-12-01

    Allochthonous inputs act as resource subsidies to many ecosystems, where they exert strong influences on metabolism and material cycling. At the same time, metabolic theory proposes endogenous thermal control independent of resource supply. To address the relative importance of exogenous and endogenous influences, we quantified spatial and temporal variation in ecosystem metabolism and nitrogen (N) uptake using seasonal releases of 15N as nitrate in six streams differing in riparian-stream interaction and metabolic character. Nitrate removal was quantified using a nutrient spiraling approach based on measurements of downstream decline in 15N flux. Respiration (R) and gross primary production (GPP) were measured with whole-stream diel oxygen budgets. Uptake and metabolism metrics were addressed as z scores relative to site means to assess temporal variation. In open-canopied streams, areal uptake (U; microg N x m(-2) x s(-1)) was closely related to GPP, metabolic rates increased with temperature, and R was accurately predicted by metabolic scaling relationships. In forested streams, N spiraling was not related to GPP; instead, uptake velocity (v(f); mm/s) was closely related to R. In contrast to open-canopied streams, N uptake and metabolic activity were negatively correlated to temperature and poorly described by scaling laws. We contend that streams differ along a gradient of exogenous and endogenous control that relates to the relative influences of resource subsidies and in-stream energetics as determinants of seasonal patterns of metabolism and N cycling. Our research suggests that temporal variation in the propagation of ecological influence between adjacent systems generates phases when ecosystems are alternatively characterized as endogenously and exogenously controlled.

  2. Re-Meandering of Lowland Streams

    DEFF Research Database (Denmark)

    Pedersen, Morten Lauge; Kristensen, Klaus Kevin; Friberg, Nikolai

    2014-01-01

    We evaluated the restoration of physical habitats and its influence on macroinvertebrate community structure in 18 Danish lowland streams comprising six restored streams, six streams with little physical alteration and six channelized streams. We hypothesized that physical habitats and macroinver...

  3. Visualization of Metabolic Interaction Networks in Microbial Communities Using VisANT 5.0.

    Directory of Open Access Journals (Sweden)

    Brian R Granger

    2016-04-01

    Full Text Available The complexity of metabolic networks in microbial communities poses an unresolved visualization and interpretation challenge. We address this challenge in the newly expanded version of a software tool for the analysis of biological networks, VisANT 5.0. We focus in particular on facilitating the visual exploration of metabolic interaction between microbes in a community, e.g. as predicted by COMETS (Computation of Microbial Ecosystems in Time and Space, a dynamic stoichiometric modeling framework. Using VisANT's unique metagraph implementation, we show how one can use VisANT 5.0 to explore different time-dependent ecosystem-level metabolic networks. In particular, we analyze the metabolic interaction network between two bacteria previously shown to display an obligate cross-feeding interdependency. In addition, we illustrate how a putative minimal gut microbiome community could be represented in our framework, making it possible to highlight interactions across multiple coexisting species. We envisage that the "symbiotic layout" of VisANT can be employed as a general tool for the analysis of metabolism in complex microbial communities as well as heterogeneous human tissues. VisANT is freely available at: http://visant.bu.edu and COMETS at http://comets.bu.edu.

  4. Visualization of Metabolic Interaction Networks in Microbial Communities Using VisANT 5.0.

    Science.gov (United States)

    Granger, Brian R; Chang, Yi-Chien; Wang, Yan; DeLisi, Charles; Segrè, Daniel; Hu, Zhenjun

    2016-04-01

    The complexity of metabolic networks in microbial communities poses an unresolved visualization and interpretation challenge. We address this challenge in the newly expanded version of a software tool for the analysis of biological networks, VisANT 5.0. We focus in particular on facilitating the visual exploration of metabolic interaction between microbes in a community, e.g. as predicted by COMETS (Computation of Microbial Ecosystems in Time and Space), a dynamic stoichiometric modeling framework. Using VisANT's unique metagraph implementation, we show how one can use VisANT 5.0 to explore different time-dependent ecosystem-level metabolic networks. In particular, we analyze the metabolic interaction network between two bacteria previously shown to display an obligate cross-feeding interdependency. In addition, we illustrate how a putative minimal gut microbiome community could be represented in our framework, making it possible to highlight interactions across multiple coexisting species. We envisage that the "symbiotic layout" of VisANT can be employed as a general tool for the analysis of metabolism in complex microbial communities as well as heterogeneous human tissues. VisANT is freely available at: http://visant.bu.edu and COMETS at http://comets.bu.edu.

  5. Shifting stream planform state decreases stream productivity yet increases riparian animal production

    Science.gov (United States)

    Venarsky, Michael P.; Walters, David M.; Hall, Robert O.; Livers, Bridget; Wohl, Ellen

    2018-01-01

    In the Colorado Front Range (USA), disturbance history dictates stream planform. Undisturbed, old-growth streams have multiple channels and large amounts of wood and depositional habitat. Disturbed streams (wildfires and logging tested how these opposing stream states influenced organic matter, benthic macroinvertebrate secondary production, emerging aquatic insect flux, and riparian spider biomass. Organic matter and macroinvertebrate production did not differ among sites per unit area (m−2), but values were 2 ×–21 × higher in undisturbed reaches per unit of stream valley (m−1 valley) because total stream area was higher in undisturbed reaches. Insect emergence was similar among streams at the per unit area and per unit of stream valley. However, rescaling insect emergence to per meter of stream bank showed that the emerging insect biomass reaching the stream bank was lower in undisturbed sites because multi-channel reaches had 3 × more stream bank than single-channel reaches. Riparian spider biomass followed the same pattern as emerging aquatic insects, and we attribute this to bottom-up limitation caused by the multi-channeled undisturbed sites diluting prey quantity (emerging insects) reaching the stream bank (riparian spider habitat). These results show that historic landscape disturbances continue to influence stream and riparian communities in the Colorado Front Range. However, these legacy effects are only weakly influencing habitat-specific function and instead are primarily influencing stream–riparian community productivity by dictating both stream planform (total stream area, total stream bank length) and the proportional distribution of specific habitat types (pools vs riffles).

  6. Effects of low concentrations of glyphosate-based herbicide factor 540® on an agricultural stream freshwater phytoplankton community.

    Science.gov (United States)

    Smedbol, Élise; Gomes, Marcelo Pedrosa; Paquet, Serge; Labrecque, Michel; Lepage, Laurent; Lucotte, Marc; Juneau, Philippe

    2018-02-01

    Residual glyphosate from glyphosate based herbicides (GBH) are ubiquitously detected in streams draining agricultural fields, and may affect phytoplankton communities present in these ecosystems. Here, the effects of the exposure (96 h) of a phytoplankton community collected in an agricultural stream to various glyphosate concentrations (1, 5, 10, 50, 100, 500 and 1000 μg l -1 ) of Factor 540 ® GBH were investigated. The lowest GBH concentration of 1 μg l -1 reduced chlorophyll a and carotenoid contents. Low glyphosate concentrations, such as 5 and 10 μg l -1 , promoted changes in the community's structure and reduced the diversity of the main algal species. At glyphosate concentrations ranging from 50 to 1000 μg l -1 , the phytoplankton community's composition was modified and new main species appeared. The highest glyphosate concentrations (500 and 1000 μg l -1 ) affected the shikimate content, the lipid peroxidation and the activity of antioxidant enzymes (superoxide dismutase, catalase and ascorbate peroxidase). These results indicate that GBH can modify structural and functional properties of freshwater phytoplankton communities living in streams located in agricultural areas at glyphosate concentrations much inferior to the 800 μg l -1 threshold set by the Canadian guidelines for the protection of aquatic life. Crown Copyright © 2017. Published by Elsevier Ltd. All rights reserved.

  7. Metal concentrations in stream biofilm and sediments and their potential to explain biofilm microbial community structure

    International Nuclear Information System (INIS)

    Ancion, Pierre-Yves; Lear, Gavin; Dopheide, Andrew; Lewis, Gillian D.

    2013-01-01

    Concentrations of metals associated with sediments have traditionally been analysed to assess the extent of heavy metal contamination in freshwater environments. Stream biofilms present an alternative medium for this assessment which may be more relevant to the risk incurred by stream ecosystems as they are intensively grazed by aquatic organisms at a higher trophic level. Therefore, we investigated zinc, copper and lead concentrations in biofilms and sediments of 23 stream sites variously impacted by urbanisation. Simultaneously, biofilm bacterial and ciliate protozoan community structure was analysed by Automated Ribosomal Intergenic Spacer Analysis and Terminal Restriction Fragment Length Polymorphism, respectively. Statistical analysis revealed that biofilm associated metals explained a greater proportion of the variations observed in bacterial and ciliate communities than did sediment associated-metals. This study suggests that the analysis of metal concentrations in biofilms provide a good assessment of detrimental effects of metal contaminants on aquatic biota. - Highlights: ► Zn, Cu and Pb concentrations in biofilm and sediments from 23 streams were assessed. ► Bacteria and ciliate protozoa were simultaneously used as biological indicators. ► Zn and Cu were generally enriched in biofilm compared to sediments. ► Metals in biofilm provide a useful assessment of freshwater ecosystem contamination. ► Results highlight the likely ecological importance of biofilm associated metals. - Metal concentrations in stream biofilms provide a good assessment of the effects of trace metal contaminants on freshwater ecosystems.

  8. Comparative metagenome of a stream impacted by the urbanization phenomenon

    Directory of Open Access Journals (Sweden)

    Julliane Dutra Medeiros

    Full Text Available Abstract Rivers and streams are important reservoirs of freshwater for human consumption. These ecosystems are threatened by increasing urbanization, because raw sewage discharged into them alters their nutrient content and may affect the composition of their microbial community. In the present study, we investigate the taxonomic and functional profile of the microbial community in an urban lotic environment. Samples of running water were collected at two points in the São Pedro stream: an upstream preserved and non-urbanized area, and a polluted urbanized area with discharged sewage. The metagenomic DNA was sequenced by pyrosequencing. Differences were observed in the community composition at the two sites. The non-urbanized area was overrepresented by genera of ubiquitous microbes that act in the maintenance of environments. In contrast, the urbanized metagenome was rich in genera pathogenic to humans. The functional profile indicated that the microbes act on the metabolism of methane, nitrogen and sulfur, especially in the urbanized area. It was also found that virulence/defense (antibiotic resistance and metal resistance and stress response-related genes were disseminated in the urbanized environment. The structure of the microbial community was altered by uncontrolled anthropic interference, highlighting the selective pressure imposed by high loads of urban sewage discharged into freshwater environments.

  9. Investigating Stream Metabolism and Nutrient Dynamics in Contrasting Ecosystems: The Role of Hydrologic Compartments

    Science.gov (United States)

    Gonzalez-Pinzon, R.; Riveros-Iregui, D. A.; Covino, T. P.

    2015-12-01

    The interactions between mobile and less mobile hydrologic compartments affect the quality and quantity of water in streams and aquifers, and the cycling of dissolved carbon and nutrients. As new laboratory and field techniques become available, new questions and challenges emerge, including: What do we measure, where, and for how long to fully characterize a system? and, What is the ideal cost-maintenance-benefit relationship that we should strive for to maximize knowledge gained in different field settings? We recently performed a series of field experiments to measure aquatic metabolism and nutrient dynamics in two highly contrasting hydrologic systems, i.e., 1) a wetland-stream alpine, tropical system in Colombia (South America) and 2) a dryland river continuum (1st - 5th stream orders) in New Mexico. In this presentation we discuss how multiple lines of evidence can support the analysis of key aquatic processes and how co-interpretation provides a more complete picture of stream complexity. For this analysis, we deployed YSI EXO2 and 6920 sondes, Turner Designs C-sense and C6 sensors, and Onset HOBO water quality data loggers. Parameters measured by these instruments include conductivity, temperature, dissolved oxygen, pH, turbidity, pCO2, chlorophyll-a, phycocyanin, fluorescein, CDOM, brighteners and water depth. We also injected conservative tracers (i.e., NaCl and NaBr) and the bioreactive tracer resazurin in both experimental sites, and NO3 in the dryland river continuum. NO3 was measured in-situ with Satlantic Submersible Ultraviolet Nitrate Analyzers (SUNA) sensors and in the laboratory using Ion Chromatograph techniques using stream grab samples. Our results highlight the role of both residence times and chemical fluxes in regulating the effective processing of carbon and nutrients. Our results also demonstrate that stream stimuli from controlled experiments are ideal for maximizing the information content derived from short (hours to days) and mid

  10. Occurrence of polycyclic aromatic hydrocarbons below coal-tar-sealed parking lots and effects on stream benthic macroinvertebrate communities

    Energy Technology Data Exchange (ETDEWEB)

    Scoggins, M.; McClintock, N.L.; Gosselink, L.; Bryer, P. [City Austin, Austin, TX (United States)

    2007-12-15

    Parking-lot pavement sealants recently have been recognized as a major source of polycyclic aromatic hydrocarbons (PAHs) in urban stream sediments in Austin, Texas. Laboratory and field studies have shown that PAHs in sediments can be toxic to aquatic organisms and can degrade aquatic communities. After identifying increases in concentrations of PAHs in sediments below seal-coated parking lots, we investigated whether the increases had significant effects on stream biota in 5 Austin streams. We sampled sediment chemistry and biological communities above and below the point at which stormwater runoff from the parking lots discharged into the streams, thus providing 5 upstream reference sites and 5 downstream treatment sites. Differences between upstream and downstream concentrations of total PAH ranged from 3.9 to 32 mg/kg. Analysis of the species occurrence data from pool and riffle habitats indicated a significant decrease in community health at the downstream sites, including decreases in richness, intolerant taxa, Diptera taxa, and density. In pool sediments, Chironomidae density was negatively correlated with PAH concentrations, whereas Oligochaeta density responded positively to PAH concentrations. In general, pool taxa responded more strongly than riffle taxa to PAHs, but riffle taxa responded more broadly than pool taxa. Increases in PAH sediment-toxicity units between upstream and downstream sites explained decreases in taxon richness and density in pools between upstream and downstream sites.

  11. Community assembly of adult odonates in tropical streams: an ecophysiological hypothesis.

    Directory of Open Access Journals (Sweden)

    Paulo De Marco Júnior

    Full Text Available Community assembly theory is founded on the premise that the relative importance of local environmental processes and dispersal shapes the compositional structure of metacommunities. The species sorting model predicts that assemblages are dominated by the environmental filtering of species that are readily able to disperse to suitable sites. We propose an ecophysiological hypothesis (EH for the mechanism underlying the organization of species-sorting odonate metacommunities based on the interplay of thermoregulation, body size and the degree of sunlight availability in small-to-medium tropical streams. Due to thermoregulatory restrictions, the EH predicts (i that larger species are disfavored in small streams and (ii that streams exhibit a nested compositional pattern characterized by species' size distribution. To test the EH, we evaluate the longitudinal distribution of adult Odonata at 19 sites in 1st- to 6th-order streams in the Tropical Cerrado of Brazil. With increasing channel width, the total abundance and species richness of Anisoptera increased, while the abundance of Zygoptera decreased. The first axis of an ordination analysis of the species abundance data was directly related to channel width. Mean and maximum thorax size are positively correlated to channel width, but no relationship was found for the minimum thorax size, suggesting that there is no lower size constraint on the occurrence of these species. Additionally, a nested compositional pattern related to body size was observed. Our results support the EH and its use as an ecological assembly rule based on abiotic factors. Forest cover functions as a filter to determine which species successfully colonize a given site within a metacommunity. As a consequence, the EH also indicates higher treats for small-bodied zygopterans in relation to the loss of riparian forests in tropical streams.

  12. Effectiveness of community-based exercise intervention programme in obese adults with metabolic syndrome.

    Science.gov (United States)

    Chang, Shu-Hung; Chen, Miao-Chuan; Chien, Nai-Hui; Lin, Hsih-Fong

    2016-09-01

    The objective of this study was to change the anthropometric, clinical, biochemical indicators and the rate of metabolic syndrome among obese adults in community. Obesity is an indicator of metabolic syndrome and cardiometabolic diseases. Obesity increases national health care expenditure in Taiwan. The high prevalence of obesity is not only a public health issue but also an economic problem. Changes in lifestyle can help to prevent metabolic syndrome for individuals with obesity. A randomised controlled trial was applied. In this randomised controlled trial by location, 136 metabolically abnormal obese individuals were included. The related indicators with metabolic syndrome were measured at baseline and after six months. The experimental group participated in a six-month community-based programme including provided exercise environments, exercise skills and volunteers' reminding. The control group was only provided environment and skills. One hundred and thirty-one participants completed this trail. In comparison with the baseline, the intervention group showed a significant increase in high-density lipoprotein cholesterol (2·34 mg/dl), and decrease in body weight (1·09 kg), waist circumference (3·63 cm), systolic blood pressure (10·52 mmHg), diastolic blood pressure (5·21 mmHg), fasting blood glucose (5·84 mg/dl) and body mass index (0·74 kg/m(2) ). In the control group, significant decrease in body mass index and waist circumference were discovered. Compared to the changes between the two groups, the results showed there were significant differences in waist circumference, systolic blood pressure, diastolic blood pressure and high-density lipoprotein cholesterol. The community-based intervention could help to improve high-density lipoprotein cholesterol, reduce body weight, body mass index, waist circumference, blood pressure and fasting blood glucose in metabolically abnormal obese. This community-based programme helped metabolically abnormal

  13. A mesocosm approach for detecting stream invertebrate community responses to treated wastewater effluent

    International Nuclear Information System (INIS)

    Grantham, Theodore E.; Cañedo-Argüelles, Miguel; Perrée, Isabelle; Rieradevall, Maria; Prat, Narcís

    2012-01-01

    The discharge of wastewater from sewage treatment plants is one of the most common forms of pollution to river ecosystems, yet the effects on aquatic invertebrate assemblages have not been investigated in a controlled experimental setting. Here, we use a mesocosm approach to evaluate community responses to exposure to different concentrations of treated wastewater effluents over a two week period. Multivariate analysis using Principal Response Curves indicated a clear, dose-effect response to the treatments, with significant changes in macroinvertebrate assemblages after one week when exposed to 30% effluent, and after two weeks in the 15% and 30% effluent treatments. Treatments were associated with an increase in nutrient concentrations (ammonium, sulfate, and phosphate) and reduction of dissolved oxygen. These findings indicate that exposure to wastewater effluent cause significant changes in abundance and composition of macroinvertebrate taxa and that effluent concentration as low as 5% can have detectable ecological effects. - Highlights: ► Stream invertebrate communities are altered by exposure to wastewater effluent. ► Principal Response Curves indicate a dose-effect response to effluent treatment. ► Biotic quality indices decline with increasing effluent concentration and exposure time. ► Effluent concentrations as low as 5% have detectable ecological effects. - Exposure to treated effluent in a stream mesocosm caused a dose-dependent response in the aquatic invertebrate community and led to declines in biological quality indices.

  14. Diel changes in stream periphyton extracellular enzyme activity throughout community development on inert and organic substrates

    Science.gov (United States)

    Rier, S. T.; Francoeur, S. N.; Kuehn, K. A.

    2005-05-01

    We tested the hypothesis that algal photosynthesis in stream periphyton communities would influence the activities of extracellular enzymes produced by associated heterotrophic bacteria and fungi to acquire organic compounds and inorganic nutrients. We approached this question by looking for diurnal variation in activities of four extracellular enzymes in periphyton communities that were grown on either inert (glass fiber filters) or organic (leaves) substrata that there were incubated in stream-side channels that were either open to full sun or shaded. Substrata were subsampled for β-glucosidase, alkaline phosphotase, leucine-aminopeptidase, and phenol oxidase activities at 3-5 hr. intervals over two consecutive diurnal cycles that were repeated at an early and later stage of periphyton community development. Activities of all enzymes displayed diurnal periodicity but the strength of the diurnal effects depended largely on the substrate type and stage of community development. The most consistent diurnal change was observed with phenol oxidase activity with significantly greater (p<0.05) activities being observed in during the day for both stages of community development and for both substrate types. It is likely that oxygen produced by algal photosynthesis is driving the activity of this oxidative enzyme and that algae might indirectly influence the decomposition of phenolic compounds.

  15. STREAM2016: Streaming Requirements, Experience, Applications and Middleware Workshop

    Energy Technology Data Exchange (ETDEWEB)

    Fox, Geoffrey [Indiana Univ., Bloomington, IN (United States); Jha, Shantenu [Rutgers Univ., New Brunswick, NJ (United States); Ramakrishnan, Lavanya [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)

    2016-10-01

    The Department of Energy (DOE) Office of Science (SC) facilities including accelerators, light sources and neutron sources and sensors that study, the environment, and the atmosphere, are producing streaming data that needs to be analyzed for next-generation scientific discoveries. There has been an explosion of new research and technologies for stream analytics arising from the academic and private sectors. However, there has been no corresponding effort in either documenting the critical research opportunities or building a community that can create and foster productive collaborations. The two-part workshop series, STREAM: Streaming Requirements, Experience, Applications and Middleware Workshop (STREAM2015 and STREAM2016), were conducted to bring the community together and identify gaps and future efforts needed by both NSF and DOE. This report describes the discussions, outcomes and conclusions from STREAM2016: Streaming Requirements, Experience, Applications and Middleware Workshop, the second of these workshops held on March 22-23, 2016 in Tysons, VA. STREAM2016 focused on the Department of Energy (DOE) applications, computational and experimental facilities, as well software systems. Thus, the role of “streaming and steering” as a critical mode of connecting the experimental and computing facilities was pervasive through the workshop. Given the overlap in interests and challenges with industry, the workshop had significant presence from several innovative companies and major contributors. The requirements that drive the proposed research directions, identified in this report, show an important opportunity for building competitive research and development program around streaming data. These findings and recommendations are consistent with vision outlined in NRC Frontiers of Data and National Strategic Computing Initiative (NCSI) [1, 2]. The discussions from the workshop are captured as topic areas covered in this report's sections. The report

  16. Bedside Evaluation of Cerebral Energy Metabolism in Severe Community-Acquired Bacterial Meningitis

    DEFF Research Database (Denmark)

    Rom Poulsen, Frantz; Schulz, Mette; Jacobsen, Anne

    2015-01-01

    BACKGROUND: Mortality and morbidity have remained high in bacterial meningitis. Impairment of cerebral energy metabolism probably contributes to unfavorable outcome. Intracerebral microdialysis is routinely used to monitor cerebral energy metabolism, and recent experimental studies indicate...... that this technique may separate ischemia and non-ischemic mitochondrial dysfunction. The present study is a retrospective interpretation of biochemical data obtained in a series of patients with severe community-acquired meningitis. METHODS: Cerebral energy metabolism was monitored in 15 patients with severe...... community-acquired meningitis utilizing intracerebral microdialysis and bedside biochemical analysis. According to previous studies, cerebral ischemia was defined as lactate/pyruvate (LP) ratio >30 with intracerebral pyruvate level

  17. Hierarchical spatial structure of stream fish colonization and extinction

    Science.gov (United States)

    Hitt, N.P.; Roberts, J.H.

    2012-01-01

    Spatial variation in extinction and colonization is expected to influence community composition over time. In stream fish communities, local species richness (alpha diversity) and species turnover (beta diversity) are thought to be regulated by high extinction rates in headwater streams and high colonization rates in downstream areas. We evaluated the spatiotemporal structure of fish communities in streams originally surveyed by Burton and Odum 1945 (Ecology 26: 182-194) in Virginia, USA and explored the effects of species traits on extinction and colonization dynamics. We documented dramatic changes in fish community structure at both the site and stream scales. Of the 34 fish species observed, 20 (59%) were present in both time periods, but 11 (32%) colonized the study area and three (9%) were extirpated over time. Within streams, alpha diversity increased in two of three streams but beta diversity decreased dramatically in all streams due to fish community homogenization caused by colonization of common species and extirpation of rare species. Among streams, however, fish communities differentiated over time. Regression trees indicated that reproductive life-history traits such as spawning mound construction, associations with mound-building species, and high fecundity were important predictors of species persistence or colonization. Conversely, native fishes not associated with mound-building exhibited the highest rates of extirpation from streams. Our results demonstrate that stream fish colonization and extinction dynamics exhibit hierarchical spatial structure and suggest that mound-building fishes serve as keystone species for colonization of headwater streams.

  18. Role of community pharmacists in the prevention and management of the metabolic syndrome in Kuwait.

    Science.gov (United States)

    Katoue, Maram G; Awad, Abdelmoneim I; Kombian, Samuel B

    2013-02-01

    The metabolic syndrome is a cluster of cardiovascular risk factors and its prevalence is alarmingly high in Kuwait, affecting nearly one third of the adult population. There is lack of information about the role of community pharmacists in the care of patients with the metabolic syndrome. To assess the awareness and opinions of community pharmacists about the metabolic syndrome and identify the services they provide for identification, management and monitoring of patients with the metabolic syndrome. Community pharmacies in Kuwait. A descriptive, cross-sectional study was performed on a randomly selected sample of 225 community pharmacists. Data were collected via face-to-face structured interview of the pharmacists using a pre-tested questionnaire. Pharmacists' knowledge and views on the metabolic syndrome, monitoring services provided, self-reported practices and perceived effectiveness of the various management interventions for the metabolic syndrome. The response rate was 97.8 %. Nine pharmacists claimed to know about the metabolic syndrome, but only one pharmacist could identify the condition correctly. After being given a definition of the metabolic syndrome, 67.7 % of respondents strongly agreed that its prevalence was rising in Kuwait. Nearly two thirds of respondents reported providing height and weight measurement service while 82.7 and 59.5 % of pharmacies provided blood pressure and blood glucose measurements, respectively. Waist circumference and lipid profile measurements were the least provided services (1.8 %). Respondents claimed to be involved in counseling patients on lifestyle modifications including increased exercise (98.1 %) and weight reduction through diet (96.9 %). Most pharmacists were involved in encouraging patients' adherence with prescribed treatments (98.6 %) and perceived these as the most effective intervention for the management of the metabolic syndrome (95.0 %). Respondents were less involved in monitoring patients' response

  19. Cryptic biodiversity in streams: a comparison of macroinvertebrate communities based on morphological and DNA barcode identifications

    Science.gov (United States)

    Species-level identifications are difficult or impossible for many larval aquatic macroinvertebrates. We described the taxonomic composition of macroinvertebrate communities from 5 coastal streams in 3 neighboring catchments in southern California. We compared taxonomic identific...

  20. Structural Responses of a Stream Community to a Channel Relocation Using a Natural Channel Design Approach

    Science.gov (United States)

    Jack, J.; Word, D.; Daniel, W.; Pritchard, S.; Parola, A.; Vesely, B.

    2005-05-01

    Streams have been heavily impacted by historical and contemporary management practices. Restorations are seen as a way to enhance stream ecosystem integrity, but there are few restoration sites where pre- and post-restoration data are available to assess "success." In 2003, a channelized reach of Wilson Creek (Kentucky, USA) was relocated using a natural channel design approach. We compared the structural and functional responses of the stream pre- and post restoration/relocation at sites within Wilson and two reference streams. Despite the construction disturbance, water chemistry parameters such as nitrate and turbidity were nearly identical at sampling stations above and below the relocation for 2003-2004. Macroinvertebrate colonization of the relocation sites was rapid, with communities dominated by Cheumatopsyche, Perlesta and Baetis. Assessments of CPOM transport indicated that the new stream channel is more retentive of leaf and woody debris material than the pre-restoration Wilson sites or unrestored reference stream sites. The restoration of suitable habitat and the presence of "source populations" for colonization may compensate for even large-scale (but short-term) construction disturbance. More research is needed to assess the balance between the disturbance impacts of restoration installation and the long term benefits of stream ecological improvement.

  1. Metaproteomics: extracting and mining proteome information to characterize metabolic activities in microbial communities.

    Science.gov (United States)

    Abraham, Paul E; Giannone, Richard J; Xiong, Weili; Hettich, Robert L

    2014-06-17

    Contemporary microbial ecology studies usually employ one or more "omics" approaches to investigate the structure and function of microbial communities. Among these, metaproteomics aims to characterize the metabolic activities of the microbial membership, providing a direct link between the genetic potential and functional metabolism. The successful deployment of metaproteomics research depends on the integration of high-quality experimental and bioinformatic techniques for uncovering the metabolic activities of a microbial community in a way that is complementary to other "meta-omic" approaches. The essential, quality-defining informatics steps in metaproteomics investigations are: (1) construction of the metagenome, (2) functional annotation of predicted protein-coding genes, (3) protein database searching, (4) protein inference, and (5) extraction of metabolic information. In this article, we provide an overview of current bioinformatic approaches and software implementations in metaproteome studies in order to highlight the key considerations needed for successful implementation of this powerful community-biology tool. Copyright © 2014 John Wiley & Sons, Inc.

  2. Local environment rather than past climate determines community composition of mountain stream macroinvertebrates across Europe.

    Science.gov (United States)

    Múrria, Cesc; Bonada, Núria; Vellend, Mark; Zamora-Muñoz, Carmen; Alba-Tercedor, Javier; Sainz-Cantero, Carmen Elisa; Garrido, Josefina; Acosta, Raul; El Alami, Majida; Barquín, Jose; Derka, Tomáš; Álvarez-Cabria, Mario; Sáinz-Bariain, Marta; Filipe, Ana F; Vogler, Alfried P

    2017-11-01

    Community assembly is determined by a combination of historical events and contemporary processes that are difficult to disentangle, but eco-evolutionary mechanisms may be uncovered by the joint analysis of species and genetic diversity across multiple sites. Mountain streams across Europe harbour highly diverse macroinvertebrate communities whose composition and turnover (replacement of taxa) among sites and regions remain poorly known. We studied whole-community biodiversity within and among six mountain regions along a latitudinal transect from Morocco to Scandinavia at three levels of taxonomic hierarchy: genus, species and haplotypes. Using DNA barcoding of four insect families (>3100 individuals, 118 species) across 62 streams, we found that measures of local and regional diversity and intraregional turnover generally declined slightly towards northern latitudes. However, at all hierarchical levels we found complete (haplotype) or high (species, genus) turnover among regions (and even among sites within regions), which counters the expectations of Pleistocene postglacial northward expansion from southern refugia. Species distributions were mostly correlated with environmental conditions, suggesting a strong role of lineage- or species-specific traits in determining local and latitudinal community composition, lineage diversification and phylogenetic community structure (e.g., loss of Coleoptera, but not Ephemeroptera, at northern sites). High intraspecific genetic structure within regions, even in northernmost sites, reflects species-specific dispersal and demographic histories and indicates postglacial migration from geographically scattered refugia, rather than from only southern areas. Overall, patterns were not strongly concordant across hierarchical levels, but consistent with the overriding influence of environmental factors determining community composition at the species and genus levels. © 2017 John Wiley & Sons Ltd.

  3. Effect of mesohabitats on responses of invertebrate community structure in streams under different land uses.

    Science.gov (United States)

    da Silva, Marcos Vinícius Dias; Rosa, Beatriz F J V; Alves, Roberto G

    2015-11-01

    Riparian vegetation is one of the most important abiotic components determining the water flow pattern in lotic ecosystems, influencing the composition, richness, and diversity of invertebrates. We have identified whether differences in the structure of the assemblages of invertebrates between riffles and pools may influence the responses of fauna to the effects of land use. In addition, we investigated which fauna metrics are responsible for the differentiation between riffles and pools in streams subject to different land uses. During the dry season of 2012, the main substrates of riffles and pools were sampled (Surber collector) from nine streams within forest, pasture, and urban areas. Principal component analysis (PCA) and Permanova showed differences in the set of environmental variables between streams and mesohabitats. The first PCA axis distinguished the forest and pasture streams from the urban area streams and was related to variables indicative of nutrient enrichment and land use, while the second axis was formed by velocity flow and by the quantities of ultrafine and coarse sand, which distinguished the riffles and pools of the streams. The faunal composition distinguished the streams in pasture and forest areas from the urban streams. Riffles and pools were not concordant in the representation of the invertebrate fauna, indicating the importance of sampling both mesohabitats in the types of streams investigated. The richness, taxonomic composition, and relative abundance of families of Ephemeroptera, Plecoptera, and Trichoptera showed robust responses in riffles to the effects of environmental changes, while in pools, only the richness showed a significant response. It was possibly concluded that riffles were more sensitive in detecting the effects of land use. The information from this study help to understand how the community of invertebrates and the types of habitats in streams may be affected by anthropogenic impacts.

  4. Relationship between bifenthrin sediment toxic units and benthic community metrics in urban California streams.

    Science.gov (United States)

    Hall, Lenwood W; Anderson, Ronald D

    2013-08-01

    The objective of this study was to use ecologically relevant field measurements for determining the relationship between bifenthrin sediment toxic units (TUs) (environmental concentrations/Hyalella acute LC50 value) and 15 benthic metrics in four urban California streams sampled from 2006 to 2011. Data from the following four California streams were used in the analysis: Kirker Creek (2006, 2007), Pleasant Grove Creek (2006, 2007, and 2008), Arcade Creek (2009, 2010, and 2011), and Salinas streams (2009, 2010, and 2011). The results from univariate analysis of benthic metrics versus bifenthrin TU calculations for the four California streams with multiple-year datasets combined by stream showed that there were either nonsignificant relationships or lack of metric data for 93 % of cases. For 7 % of the data (4 cases) where significant relationships were reported between benthic metrics and bifenthrin TUs, these relationships were ecologically meaningful. Three of these significant direct relationships were an expression of tolerant benthic taxa (either % tolerant taxa or tolerance values, which are similar metrics), which would be expected to increase in a stressed environment. These direct significant tolerance relationships were reported for Kirker Creek, Pleasant Grove Creek, and Arcade Creek. The fourth significant relationship was an inverse relationship between taxa richness and bifenthrin TUs for the 3-year Pleasant Grove Creek dataset. In summary, only a small percent of the benthic metric × bifenthrin TU relationships were significant for the four California streams. Therefore, the general summary conclusion from this analysis is that there is no strong case for showing consistent meaningful relationships between various benthic metrics used to characterize the status of benthic communities and bifenthrin TUs for these four California streams.

  5. Coupling nutrient uptake and energy flow in headwater streams

    Energy Technology Data Exchange (ETDEWEB)

    Mulholland, Patrick J [ORNL; Fellows, Christine [Griffith University, Nathan, Queensland, Australia; Valett, H. Maurice [Virginia Polytechnic Institute and State University (Virginia Tech); Dahm, Cliff [University of New Mexico, Albuquerque; Thomas, Steve [University of Nebraska

    2006-08-01

    Nutrient cycling and energy flow in ecosystems are tightly linked through the metabolic processes of organisms. Greater uptake of inorganic nutrients is expected to be associated with higher rates of metabolism [gross primary production (GPP) and respiration (R)], due to assimilatory demand of both autotrophs and heterotrophs. However, relationships between uptake and metabolism should vary with the relative contribution of autochthonous and allochthonous sources of organic matter. To investigate the relationship between metabolism and nutrient uptake, we used whole-stream and benthic chamber methods to measure rates of nitrate-nitrogen (NO{sub 3}-N) uptake and metabolism in four headwater streams chosen to span a range of light availability and therefore differing rates of GPP and contributions of autochthonous carbon. We coupled whole-stream metabolism with measures of NO{sub 3}-N uptake conducted repeatedly over the same stream reach during both day and night, as well as incubating benthic sediments under both light and dark conditions. NO{sub 3}-N uptake was generally greater in daylight compared to dark conditions, and although day-night differences in whole-stream uptake were not significant, light-dark differences in benthic chambers were significant at three of the four sites. Estimates of N demand indicated that assimilation by photoautotrophs could account for the majority of NO{sub 3}-N uptake at the two sites with relatively open canopies. Contrary to expectations, photoautotrophs contributed substantially to NO{sub 3}-N uptake even at the two closed-canopy sites, which had low values of GPP/R and relied heavily on allochthonous carbon to fuel R.

  6. Reach-scale land use drives the stress responses of a resident stream fish.

    Science.gov (United States)

    Blevins, Zachary W; Wahl, David H; Suski, Cory D

    2014-01-01

    Abstract To date, relatively few studies have tried to determine the practicality of using physiological information to help answer complex ecological questions and assist in conservation actions aimed at improving conditions for fish populations. In this study, the physiological stress responses of fish were evaluated in-stream between agricultural and forested stream reaches to determine whether differences in these responses can be used as tools to evaluate conservation actions. Creek chub Semotilus atromaculatus sampled directly from forested and agricultural stream segments did not show differences in a suite of physiological indicators. When given a thermal challenge in the laboratory, creek chub sampled from cooler forested stream reaches had higher cortisol levels and higher metabolic stress responses to thermal challenge than creek chub collected from warmer and more thermally variable agricultural reaches within the same stream. Despite fish from agricultural and forested stream segments having different primary and secondary stress responses, fish were able to maintain homeostasis of other physiological indicators to thermal challenge. These results demonstrate that local habitat conditions within discrete stream reaches may impact the stress responses of resident fish and provide insight into changes in community structure and the ability of tolerant fish species to persist in agricultural areas.

  7. Variation partitioning of diatom species data matrices: Understanding the influence of multiple factors on benthic diatom communities in tropical streams

    Energy Technology Data Exchange (ETDEWEB)

    Bere, Taurai, E-mail: tbere2015@gmail.com; Mangadze, Tinotenda; Mwedzi, Tongai

    2016-10-01

    Elucidating the confounding influence of multiple environmental factors on benthic diatom communities is important in developing water quality predictive models for better guidance of stream management efforts. The objective of this study was to explore the relative impact of metal pollution and hydromorphological alterations in, addition to nutrient enrichment and organic pollution, on diatom taxonomic composition with the view to improve stream diatom-based water quality inference models. Samples were collected twice at 20 sampling stations in the tropical Manyame Catchment, Zimbabwe. Diatom, macroinvertebrate communities and environmental factors were sampled and analysed. The variations in diatom community composition explained by different categories of environmental factors were analysed using canonical correspondence analysis using variance partitioning (partial CCA). The following variations were explained by the different predictor matrices: nutrient levels and organic pollution - 10.4%, metal pollution - 8.3% and hydromorphological factors - 7.9%. Thus, factors other than nutrient levels and organic pollution explain additional significant variation in these diatom communities. Development of diatom-based stream water quality inference models that incorporate metal pollution and hydromorphological alterations, where these are key issues, is thus deemed necessary. - Highlights: • Confounding influences of multiple environmental factors on diatom communities are elucidated. • Variation explained: nutrients + organic pollution - 10.4%, metals - 8.3% and hydromorphological factors - 7.9%. • Calibration of existing or development of new indices may be necessary.

  8. Variation partitioning of diatom species data matrices: Understanding the influence of multiple factors on benthic diatom communities in tropical streams

    International Nuclear Information System (INIS)

    Bere, Taurai; Mangadze, Tinotenda; Mwedzi, Tongai

    2016-01-01

    Elucidating the confounding influence of multiple environmental factors on benthic diatom communities is important in developing water quality predictive models for better guidance of stream management efforts. The objective of this study was to explore the relative impact of metal pollution and hydromorphological alterations in, addition to nutrient enrichment and organic pollution, on diatom taxonomic composition with the view to improve stream diatom-based water quality inference models. Samples were collected twice at 20 sampling stations in the tropical Manyame Catchment, Zimbabwe. Diatom, macroinvertebrate communities and environmental factors were sampled and analysed. The variations in diatom community composition explained by different categories of environmental factors were analysed using canonical correspondence analysis using variance partitioning (partial CCA). The following variations were explained by the different predictor matrices: nutrient levels and organic pollution - 10.4%, metal pollution - 8.3% and hydromorphological factors - 7.9%. Thus, factors other than nutrient levels and organic pollution explain additional significant variation in these diatom communities. Development of diatom-based stream water quality inference models that incorporate metal pollution and hydromorphological alterations, where these are key issues, is thus deemed necessary. - Highlights: • Confounding influences of multiple environmental factors on diatom communities are elucidated. • Variation explained: nutrients + organic pollution - 10.4%, metals - 8.3% and hydromorphological factors - 7.9%. • Calibration of existing or development of new indices may be necessary.

  9. Influence of shredder feeding and nutrients on fungal activity and community structure in headwater streams

    Science.gov (United States)

    Namil Chung; Keller. Suberkropp

    2008-01-01

    In stream detrital food webs, interactions occur between aquatic hyphomycetes associated with decomposing leaves and shredders consuming those leaves. However, few studies have examined how the feeding activity of shredders affects aquatic hyphomycetes. We examined the effect of shredder feeding on aquatic hyphomycete communities associated with submerged leaves in two...

  10. Whole-stream metabolism of a perennial spring-fed aufeis field in Alaska, with coincident surface and subsurface flow

    Science.gov (United States)

    Hendrickson, P. J.; Gooseff, M. N.; Huryn, A. D.

    2017-12-01

    Aufeis (icings or naleds) are seasonal arctic and sub-arctic features that accumulate through repeated overflow and freeze events of river or spring discharge. Aufeis fields, defined as the substrate on which aufeis form and the overlaying ice, have been studied to mitigate impacts on engineering structures; however, ecological characteristics and functions of aufeis fields are poorly understood. The perennial springs that supply warm water to aufeis fields create unique fluvial habitats, and are thought to act as winter and summer oases for biota. To investigate ecosystem function, we measured whole-stream metabolism at the Kuparuk River Aufeis (North Slope, AK), a large ( 5 km2) field composed of cobble substrate and predominately subsurface flow dynamics. The single-station open channel diel oxygen method was utilized at several dissolved oxygen (DO) stations located within and downstream of the aufeis field. DO loggers were installed in August 2016, and data downloaded summer 2017. Daily ecosystem respiration (ER), gross primary production (GPP) and reaeration rates were modeled using BASE, a package freely available in the open-source software R. Preliminary results support net heterotrophy during a two-week period of DO measurements in the fall season when minimum ice extent is observed. GPP, ER, and net metabolism are greater at the upstream reach near the spring source (P/R = 0.53), and decrease as flow moves downstream. As flow exits the aufeis field, surface and subsurface flow are incorporated into the metabolism model, and indicate the stream system becomes dependent on autochthonous production (P/R = 0.91). Current work is directed towards spring and summer discharge and metabolic parameter estimation, which is associated with maximum ice extent and rapid melting of the aufeis feature.

  11. Inferring community properties of benthic macroinvertebrates in streams using Shannon index and exergy

    Science.gov (United States)

    Nguyen, Tuyen Van; Cho, Woon-Seok; Kim, Hungsoo; Jung, Il Hyo; Kim, YongKuk; Chon, Tae-Soo

    2014-03-01

    Definition of ecological integrity based on community analysis has long been a critical issue in risk assessment for sustainable ecosystem management. In this work, two indices (i.e., Shannon index and exergy) were selected for the analysis of community properties of benthic macroinvertebrate community in streams in Korea. For this purpose, the means and variances of both indices were analyzed. The results found an extra scope of structural and functional properties in communities in response to environmental variabilities and anthropogenic disturbances. The combination of these two parameters (four indices) was feasible in identification of disturbance agents (e.g., industrial pollution or organic pollution) and specifying states of communities. The four-aforementioned parameters (means and variances of Shannon index and exergy) were further used as input data in a self-organizing map for the characterization of water quality. Our results suggested that Shannon index and exergy in combination could be utilized as a suitable reference system and would be an efficient tool for assessment of the health of aquatic ecosystems exposed to environmental disturbances.

  12. Changes in vegetative communities and water table dynamics following timber harvesting in small headwater streams

    Science.gov (United States)

    B. Choi; J.C. Dewey; J. A. Hatten; A.W. Ezell; Z. Fan

    2012-01-01

    In order to better understand the relationship between vegetation communities and water table in the uppermost portions (ephemeral–intermittent streams) of headwater systems, seasonal plot-based field characterizations of vegetation were used in conjunction with monthly water table measurements. Vegetation, soils, and water table data were examined to determine...

  13. Stream invertebrate productivity linked to forest subsidies: 37 stream-years of reference and experimental data

    Science.gov (United States)

    J. Bruce Wallace; Susan L Eggert; Judy L. Meyer; Jackson R. Webster

    2015-01-01

    Riparian habitats provide detrital subsidies of varying quantities and qualities to recipient ecosystems. We used long-term data from three reference streams (covering 24 stream-years) and 13-year whole-stream organic matter manipulations to investigate the influence of terrestrial detrital quantity and quality on benthic invertebrate community structure, abundance,...

  14. Repurposing Waste Streams: Lessons on Integrating Hospital Food Waste into a Community Garden.

    Science.gov (United States)

    Galvan, Adri M; Hanson, Ryan; George, Daniel R

    2018-04-06

    There have been increasing efforts in recent decades to divert institutional food waste into composting programs. As major producers of food waste who must increasingly demonstrate community benefit, hospitals have an incentive to develop such programs. In this article, we explain the emerging opportunity to link hospitals' food services to local community gardens in order to implement robust composting programs. We describe a partnership model at our hospital in central Pennsylvania, share preliminary outcomes establishing feasibility, and offer guidance for future efforts. We also demonstrate that the integration of medical students in such efforts can foster systems thinking in the development of programs to manage hospital waste streams in more ecologically-friendly ways.

  15. Thinking beyond the Bioreactor Box: Incorporating Stream Ecology into Edge-of-Field Nitrate Management.

    Science.gov (United States)

    Goeller, Brandon C; Febria, Catherine M; Harding, Jon S; McIntosh, Angus R

    2016-05-01

    Around the world, artificially drained agricultural lands are significant sources of reactive nitrogen to stream ecosystems, creating substantial stream health problems. One management strategy is the deployment of denitrification enhancement tools. Here, we evaluate the factors affecting the potential of denitrifying bioreactors to improve stream health and ecosystem services. The performance of bioreactors and the structure and functioning of stream biotic communities are linked by environmental parameters like dissolved oxygen and nitrate-nitrogen concentrations, dissolved organic carbon availability, flow and temperature regimes, and fine sediment accumulations. However, evidence of bioreactors' ability to improve waterway health and ecosystem services is lacking. To improve the potential of bioreactors to enhance desirable stream ecosystem functioning, future assessments of field-scale bioreactors should evaluate the influences of bioreactor performance on ecological indicators such as primary production, organic matter processing, stream metabolism, and invertebrate and fish assemblage structure and function. These stream health impact assessments should be conducted at ecologically relevant spatial and temporal scales. Bioreactors have great potential to make significant contributions to improving water quality, stream health, and ecosystem services if they are tailored to site-specific conditions and implemented strategically with land-based and stream-based mitigation tools within watersheds. This will involve combining economic, logistical, and ecological information in their implementation. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

  16. Evaluating the effectiveness of restoring longitudinal connectivity for stream fish communities: towards a more holistic approach.

    Science.gov (United States)

    Tummers, Jeroen S; Hudson, Steve; Lucas, Martyn C

    2016-11-01

    A more holistic approach towards testing longitudinal connectivity restoration is needed in order to establish that intended ecological functions of such restoration are achieved. We illustrate the use of a multi-method scheme to evaluate the effectiveness of 'nature-like' connectivity restoration for stream fish communities in the River Deerness, NE England. Electric-fishing, capture-mark-recapture, PIT telemetry and radio-telemetry were used to measure fish community composition, dispersal, fishway efficiency and upstream migration respectively. For measuring passage and dispersal, our rationale was to evaluate a wide size range of strong swimmers (exemplified by brown trout Salmo trutta) and weak swimmers (exemplified by bullhead Cottus perifretum) in situ in the stream ecosystem. Radio-tracking of adult trout during the spawning migration showed that passage efficiency at each of five connectivity-restored sites was 81.3-100%. Unaltered (experimental control) structures on the migration route had a bottle-neck effect on upstream migration, especially during low flows. However, even during low flows, displaced PIT tagged juvenile trout (total n=153) exhibited a passage efficiency of 70.1-93.1% at two nature-like passes. In mark-recapture experiments juvenile brown trout and bullhead tagged (total n=5303) succeeded in dispersing upstream more often at most structures following obstacle modification, but not at the two control sites, based on a Laplace kernel modelling approach of observed dispersal distance and barrier traverses. Medium-term post-restoration data (2-3years) showed that the fish assemblage remained similar at five of six connectivity-restored sites and two control sites, but at one connectivity-restored headwater site previously inhabited by trout only, three native non-salmonid species colonized. We conclude that stream habitat reconnection should support free movement of a wide range of species and life stages, wherever retention of such

  17. Neotropical Amphibian Declines Affect Stream Ecosystem Properties

    Science.gov (United States)

    Connelly, S.; Pringle, C. M.; Bixby, R. J.; Whiles, M. R.; Lips, K. R.; Brenes, R.; Colon-Gaud, J. C.; Kilham, S.; Hunte-Brown, M.

    2005-05-01

    Global declines of amphibians are well documented, yet effects of these dramatic losses on ecosystem structure and function are poorly understood. As part of a larger collaborative project, we compared two upland Panamanian streams. Both streams are biologically and geologically similar; however, one stream (Fortuna) has recently experienced almost complete extirpation of stream-dwelling frogs, while the other (Cope) still has intact populations. We experimentally excluded tadpoles from localized areas in each stream. We then compared chlorophyll a, algal community composition, ash-free dry mass (AFDM), inorganic matter, and insect assemblages in control and exclusion areas. Additionally, we sampled the natural substrate of both streams monthly for chlorophyll a, algal community composition, AFDM, and inorganic matter. At Cope, chlorophyll a, AFDM, and inorganic matter were greater in areas where tadpoles were excluded than in their presence. Numbers of dominant algal species (e.g., Nupela praecipua and Eunotia siolii) were greater in the exclusion versus control treatments. Monthly sampling of natural substrate indicated higher chlorophyll a and AFDM at Cope compared to Fortuna. Our data suggest that stream-dwelling anuran larvae have significant impacts on algal communities. These results also have implications for predicting the relevance of short-term experimental manipulations to long-term, whole-stream processes.

  18. Compartmentalized metabolic network reconstruction of microbial communities to determine the effect of agricultural intervention on soils

    Science.gov (United States)

    Álvarez-Yela, Astrid Catalina; Gómez-Cano, Fabio; Zambrano, María Mercedes; Husserl, Johana; Danies, Giovanna; Restrepo, Silvia; González-Barrios, Andrés Fernando

    2017-01-01

    Soil microbial communities are responsible for a wide range of ecological processes and have an important economic impact in agriculture. Determining the metabolic processes performed by microbial communities is crucial for understanding and managing ecosystem properties. Metagenomic approaches allow the elucidation of the main metabolic processes that determine the performance of microbial communities under different environmental conditions and perturbations. Here we present the first compartmentalized metabolic reconstruction at a metagenomics scale of a microbial ecosystem. This systematic approach conceives a meta-organism without boundaries between individual organisms and allows the in silico evaluation of the effect of agricultural intervention on soils at a metagenomics level. To characterize the microbial ecosystems, topological properties, taxonomic and metabolic profiles, as well as a Flux Balance Analysis (FBA) were considered. Furthermore, topological and optimization algorithms were implemented to carry out the curation of the models, to ensure the continuity of the fluxes between the metabolic pathways, and to confirm the metabolite exchange between subcellular compartments. The proposed models provide specific information about ecosystems that are generally overlooked in non-compartmentalized or non-curated networks, like the influence of transport reactions in the metabolic processes, especially the important effect on mitochondrial processes, as well as provide more accurate results of the fluxes used to optimize the metabolic processes within the microbial community. PMID:28767679

  19. Compartmentalized metabolic network reconstruction of microbial communities to determine the effect of agricultural intervention on soils.

    Directory of Open Access Journals (Sweden)

    María Camila Alvarez-Silva

    Full Text Available Soil microbial communities are responsible for a wide range of ecological processes and have an important economic impact in agriculture. Determining the metabolic processes performed by microbial communities is crucial for understanding and managing ecosystem properties. Metagenomic approaches allow the elucidation of the main metabolic processes that determine the performance of microbial communities under different environmental conditions and perturbations. Here we present the first compartmentalized metabolic reconstruction at a metagenomics scale of a microbial ecosystem. This systematic approach conceives a meta-organism without boundaries between individual organisms and allows the in silico evaluation of the effect of agricultural intervention on soils at a metagenomics level. To characterize the microbial ecosystems, topological properties, taxonomic and metabolic profiles, as well as a Flux Balance Analysis (FBA were considered. Furthermore, topological and optimization algorithms were implemented to carry out the curation of the models, to ensure the continuity of the fluxes between the metabolic pathways, and to confirm the metabolite exchange between subcellular compartments. The proposed models provide specific information about ecosystems that are generally overlooked in non-compartmentalized or non-curated networks, like the influence of transport reactions in the metabolic processes, especially the important effect on mitochondrial processes, as well as provide more accurate results of the fluxes used to optimize the metabolic processes within the microbial community.

  20. Examining microbial community response to a strong chemical gradient: the effects of surface coal mining on stream bacteria

    Science.gov (United States)

    Bier, R.; Lindberg, T. T.; Wang, S.; Ellis, J. C.; Di Giulio, R. T.; Bernhardt, E. S.

    2012-12-01

    Surface coal mining is the dominant form of land cover change in northern and central Appalachia. In this process, shallow coal seams are exposed by removing overlying rock with explosives. The resulting fragmented carbonate rock and coal residues are disposed of in stream valleys. These valley fills generate alkaline mine drainage (AlkMD), dramatically increasing alkalinity, ionic strength, substrate supply (esp. SO42-), and trace element (Mn, Li, Se, U) concentrations in downstream rivers as well as significant losses of sensitive fish and macroinvertebrate species. In prior work within the Mud River, which drains the largest surface mine complex in Appalachia, we found that concentrations of AlkMD increase proportionally with the extent of upstream mining. Here we ask "How do stream microbial communities change along this strong chemical gradient?" We collected surface water and benthic biofilms from 25 stream reaches throughout the Mud River spanning the full range of surface mining impacts, with 0-96% of the contributing watershed area converted to surface coal mines. Microbial communities were collected from biofilms grown on a common substrate (red maple veneers) that were incubated in each stream reach for four months prior to collection in April, 2011. 16S rRNA genes from microbial communities at each study site were examined using 454 sequencing and compared with a generalized UniFrac distance matrix (674 sequence eveness) that was used in statistical analyses. Water chemistry at the sites was sampled monthly from July 2010 to December 2010 and again in April 2011. In April, surface water concentrations of SO42-, Ca2+, Mg2+, and Se2- increased linearly with the extent of upstream mining (all regressions R2 >0.43; pPERMANOVA; p=0.029). Bacterial diversity (OTU richness defined at 3% sequence difference) peaked at intermediate conductivities (600 μS cm-1). Environmental data that correlated significantly with the ordination axes were a variety of surface

  1. The zoobenthos communities of streams in the Katon-Karagai State National Natural Park (the Bukhtarma river basin, Kazakhstan

    Directory of Open Access Journals (Sweden)

    Anna A. Evseeva

    2016-08-01

    Full Text Available The article presents the results of a study of zoobenthos in streams in the Katon-Karagay national Park, carried out in 2009–2011. Presented are the taxonomic composition, a description of the spatial distribution of the given habitat classification of the studied small streams, and an area analysis of the fauna of amphibiotic insects of the studied area. An assessment of significance and metrics of zoobenthic communities for biological indication of the ecological status of the streams in the Bukhtarma river basin was carried out. Conducted research on anthropogenic load in unaffected rivers or sections of rivers will solve the problems associated with the lack of baseline data on the basin of the Bukhtarma river. Recommendations are given for the biodiversity conservation of stream bottom invertebrates in Protected Areas in the Altai-Sayan Ecoregion within Kazakhstan.

  2. Effects of urban stream burial on nitrogen uptake and ...

    Science.gov (United States)

    Urbanization has resulted in extensive burial and channelization of headwater streams, yet little is known about impacts on stream ecosystem functions critical for reducing downstream nitrogen pollution. To characterize the biogeochemical impact of stream burial, we measured NO3- uptake, using 15N-NO3- isotope tracer releases, and whole stream metabolism, during four seasons in three paired buried and open streams reaches within the Baltimore Ecosystem Study Long-term Ecological Research Network. Stream burial increased NO3- uptake lengths, by a factor of 7.5 (p < 0.01) and decreased nitrate uptake velocity and areal nitrate uptake rate by factors of 8.2 (p = 0.01) and 9.6 (p < 0.001), respectively. Stream burial decreased gross primary productivity by a factor of 9.2 (p < 0.05) and decreased ecosystem respiration by a factor of 4.2 (p = 0.06). From statistical analysis of Excitation Emissions Matrices (EEMs), buried streams were also found to have significantly less labile dissolved organic matter. Furthermore, buried streams had significantly lower transient storage and water temperatures. Overall, differences in NO3- uptake and metabolism were primarily explained by decreased transient storage and light availability in buried streams. We estimate that stream burial increases daily watershed nitrate export by as much as 500% due to decreased in-stream retention and may considerably decrease carbon export via decreased primary production. These results

  3. Microbial community assembly and metabolic function during mammalian corpse decomposition

    Energy Technology Data Exchange (ETDEWEB)

    Metcalf, J. L.; Xu, Z. Z.; Weiss, S.; Lax, S.; Van Treuren, W.; Hyde, E. R.; Song, S. J.; Amir, A.; Larsen, P.; Sangwan, N.; Haarmann, D.; Humphrey, G. C.; Ackermann, G.; Thompson, L. R.; Lauber, C.; Bibat, A.; Nicholas, C.; Gebert, M. J.; Petrosino, J. F.; Reed, S. C.; Gilbert, J. A.; Lynne, A. M.; Bucheli, S. R.; Carter, D. O.; Knight, R.

    2015-12-10

    Vertebrate corpse decomposition provides an important stage in nutrient cycling in most terrestrial habitats, yet microbially mediated processes are poorly understood. Here we combine deep microbial community characterization, community-level metabolic reconstruction, and soil biogeochemical assessment to understand the principles governing microbial community assembly during decomposition of mouse and human corpses on different soil substrates. We find a suite of bacterial and fungal groups that contribute to nitrogen cycling and a reproducible network of decomposers that emerge on predictable time scales. Our results show that this decomposer community is derived primarily from bulk soil, but key decomposers are ubiquitous in low abundance. Soil type was not a dominant factor driving community development, and the process of decomposition is sufficiently reproducible to offer new opportunities for forensic investigations.

  4. Microbial community assembly and metabolic function during mammalian corpse decomposition

    Science.gov (United States)

    Metcalf, Jessica L; Xu, Zhenjiang Zech; Weiss, Sophie; Lax, Simon; Van Treuren, Will; Hyde, Embriette R.; Song, Se Jin; Amir, Amnon; Larsen, Peter; Sangwan, Naseer; Haarmann, Daniel; Humphrey, Greg C; Ackermann, Gail; Thompson, Luke R; Lauber, Christian; Bibat, Alexander; Nicholas, Catherine; Gebert, Matthew J; Petrosino, Joseph F; Reed, Sasha C.; Gilbert, Jack A; Lynne, Aaron M; Bucheli, Sibyl R; Carter, David O; Knight, Rob

    2016-01-01

    Vertebrate corpse decomposition provides an important stage in nutrient cycling in most terrestrial habitats, yet microbially mediated processes are poorly understood. Here we combine deep microbial community characterization, community-level metabolic reconstruction, and soil biogeochemical assessment to understand the principles governing microbial community assembly during decomposition of mouse and human corpses on different soil substrates. We find a suite of bacterial and fungal groups that contribute to nitrogen cycling and a reproducible network of decomposers that emerge on predictable time scales. Our results show that this decomposer community is derived primarily from bulk soil, but key decomposers are ubiquitous in low abundance. Soil type was not a dominant factor driving community development, and the process of decomposition is sufficiently reproducible to offer new opportunities for forensic investigations.

  5. Endogenous and exogenous control of ecosystem function: N cycling in headwater streams

    OpenAIRE

    Valett, H. M.; Thomas, S. A.; Mulholland, P. J.; Webster, J. R.; Dahm, C. N.; Fellows, C. S.; Crenshaw, C. L.; Peterson, C. G.

    2008-01-01

    Allochthonous inputs act as resource subsidies to many ecosystems, where they exert strong influences on metabolism and material cycling. At the same time, metabolic theory proposes endogenous thermal control independent of resource supply. To address the relative importance of exogenous and endogenous influences, we quantified spatial and temporal variation in ecosystem metabolism and nitrogen (N) uptake using seasonal releases of (15)N as nitrate in six streams differing in riparian-stream ...

  6. Impacts of drought and crayfish invasion on stream ecosystem structure and function

    Science.gov (United States)

    Magoulick, Daniel D.

    2014-01-01

    Drought and seasonal drying can be important disturbance events in many small streams, leading to intermittent or isolated habitats. Many small streams contain crayfish populations that are often keystone or dominant species in these systems. I conducted an experiment in stream mesocosms to examine the effects of drought and potential ecological redundancy of a native and invasive crayfish species. I examined the effects of drought (drought or control) and crayfish presence (none, native crayfish Orconectes eupunctus or invasive crayfish Orconectes neglectus) on stream mesocosm structure and function (leaf breakdown, community metabolism, periphyton, sediment and chironomid densities) in a fully factorial design. Each mesocosm contained a deep and shallow section, and drought treatments had surface water present (5-cm depth) in deep sections where tiles and leaf packs were placed. Drought and crayfish presence did not interact for any response variable. Drought significantly reduced leaf breakdown, and crayfish presence significantly increased leaf breakdown. However, the native and invasive crayfish species did not differ significantly in their effects on leaf breakdown. Drought significantly reduced primary production and community respiration overall, whereas crayfish presence did not significantly affect primary production and community respiration. Neither drought nor crayfish presence significantly affected periphyton overall. However, drought significantly reduced autotrophic index (AI), and crayfish presence increased AI. Inorganic sediment and chironomid density were not affected by drought, but both were significantly reduced by crayfish presence. O. eupunctus reduced AI and sediment more than O. neglectus did. Neither drought nor crayfish species significantly affected crayfish growth or survival. Drought can have strong effects on ecosystem function, but weaker effects on benthic structure. Crayfish can have strong effects on ecosystem

  7. Assessing Impacts of Unconventional Natural Gas Extraction on Microbial Communities in Headwater Stream Ecosystems in Northwestern Pennsylvania

    Directory of Open Access Journals (Sweden)

    Ryan eTrexler

    2014-11-01

    Full Text Available Hydraulic fracturing and horizontal drilling have increased dramatically in Pennsylvania Marcellus shale formations, however the potential for major environmental impacts are still incompletely understood. High-throughput sequencing of the 16S rRNA gene was performed to characterize the microbial community structure of water, sediment, bryophyte, and biofilm samples from 26 headwater stream sites in northwestern Pennsylvania with different histories of fracking activity within Marcellus shale play. Further, we describe the relationship between microbial community structure and environmental parameters measured. Approximately 3.2 million 16S rRNA gene sequences were retrieved from a total of 58 samples. Microbial community analyses showed significant reductions in species richness as well as evenness in sites with Marcellus shale activity (MSA+. Beta diversity analyses revealed distinct microbial community structure between sites with and without Marcellus shale activity (MSA-. For example, OTUs within the Acetobacteracea, Methylocystaceae, Acidobacteriaceae, and Phenylobacterium were greater than three log-fold more abundant in MSA+ sites as compared to MSA- sites. Further, several of these OTUs were strongly negatively correlated with pH and positively correlated with the number of wellpads in a watershed. It should be noted that many of the OTUs enriched in MSA+ sites are putative acidophilic and/or methanotrophic populations. This study revealed apparent shifts in the autochthonous microbial communities and highlighted potential members that could be responding to changing stream conditions as a result of nascent industrial activity in these aquatic ecosystems.

  8. Assessing impacts of unconventional natural gas extraction on microbial communities in headwater stream ecosystems in Northwestern Pennsylvania

    Science.gov (United States)

    Trexler, Ryan; Solomon, Caroline; Brislawn, Colin J.; Wright, Justin R.; Rosenberger, Abigail; McClure, Erin E.; Grube, Alyssa M.; Peterson, Mark P.; Keddache, Mehdi; Mason, Olivia U.; Hazen, Terry C.; Grant, Christopher J.; Lamendella, Regina

    2014-01-01

    Hydraulic fracturing and horizontal drilling have increased dramatically in Pennsylvania Marcellus shale formations, however the potential for major environmental impacts are still incompletely understood. High-throughput sequencing of the 16S rRNA gene was performed to characterize the microbial community structure of water, sediment, bryophyte, and biofilm samples from 26 headwater stream sites in northwestern Pennsylvania with different histories of fracking activity within Marcellus shale formations. Further, we describe the relationship between microbial community structure and environmental parameters measured. Approximately 3.2 million 16S rRNA gene sequences were retrieved from a total of 58 samples. Microbial community analyses showed significant reductions in species richness as well as evenness in sites with Marcellus shale activity. Beta diversity analyses revealed distinct microbial community structure between sites with and without Marcellus shale activity. For example, operational taxonomic units (OTUs) within the Acetobacteracea, Methylocystaceae, Acidobacteriaceae, and Phenylobacterium were greater than three log-fold more abundant in MSA+ sites as compared to MSA− sites. Further, several of these OTUs were strongly negatively correlated with pH and positively correlated with the number of wellpads in a watershed. It should be noted that many of the OTUs enriched in MSA+ sites are putative acidophilic and/or methanotrophic populations. This study revealed apparent shifts in the autochthonous microbial communities and highlighted potential members that could be responding to changing stream conditions as a result of nascent industrial activity in these aquatic ecosystems. PMID:25408683

  9. Influence of acid mine drainage on microbial communities in stream and groundwater samples at Guryong Mine, South Korea

    Science.gov (United States)

    Kim, Jaisoo; Koo, So-Yeon; Kim, Ji-Young; Lee, Eun-Hee; Lee, Sang-Don; Ko, Kyung-Seok; Ko, Dong-Chan; Cho, Kyung-Suk

    2009-10-01

    The effects of acid mine drainage (AMD) in a stream and groundwater near an abandoned copper mine were characterized by physicochemical properties, bacterial community structure using denaturing gel gradient electrophoresis (DGGE), and microbial activity/diversity using Ecoplate technique. Based on DGGE fingerprints, the eubacterial community structures grouped into the stream water (GRS1, GRS2 and GRS3) and groundwater samples (GW1 and GW2), apparently based on differences in water temperature and the concentrations of dissolved oxygen, nitrate and sulfate. The most highly AMD-contaminated sample (GRS1) had additional α-Proteobacteria whereas the groundwater samples included additional β-Proteobacteria, suggesting the development of populations resistant to AMD toxicity under aerobic and anaerobic conditions, respectively. Community level physiological activities on the 31 Ecoplate substrates suggested that the activities decreased with increasing concentrations of sulfate and heavy metals derived from AMD. The Shannon index showed that microbial diversity was greatest in GRS2, and lowest in GRS1, and was probably related to the level of AMD.

  10. Diversity and ecological aspects of aquatic insect communities from montane streams in southern Brazil

    Directory of Open Access Journals (Sweden)

    Bruna Marmitt Braun

    2014-06-01

    Full Text Available AIMS: In this study, the diversity of Ephemeroptera, Plecoptera, Trichoptera and Coleoptera communities was surveyed in the Toropi River basin, a watershed localized in a slope region, in southernmost Brazil. The influence of some local abiotic factors on the most common genera was also analyzed. METHODS: Samplings were conducted at 40 sites in 1st-4th order streams, along a short elevation gradient (70-500 m, with a Surber sampler. Water physico-chemical factors, as well as substrate type, were obtained at each site. RESULTS: At all, 5,320 specimens were collected, belonging to 18 families and 52 genera. The caddisflies Austrotinodes and Celaenotrichia, and an undescribed Elmidae, Genus M, are new records for the region. The caddisfly Smicridea was the most frequent genus in the study area. The mayflies Camelobaetidius, Paracloeodes and Americabaetis were influenced by stream order. Smicridea was related to air temperature, while the mayfly Thraulodes was influenced by high levels of electrical conductivity. CONCLUSIONS: The high diversity found in the study area, compared to other Brazilian regions, reflects the environmental heterogeneity in the region. These data show that hydrographic basins in slope areas from extreme Southern Brazil sustain high levels of diversity of aquatic insect communities.

  11. Honey locust (Gleditsia triacanthos l. (Fabaceae)) invasion effect on temperature, light and metabolism of a Pampean Stream

    International Nuclear Information System (INIS)

    Giorgi, Adonis David; Vilches, Carolina; Rodriguez Castro, Maria Carolina; Zunino, Eduardo; Debandi, Juan; Kravetz, Sebastian; Torremorell, Ana

    2014-01-01

    The establishment of invader species in a region generally modifies the ecosystems where they are introduced. In this study we analyze the effect produced by a gleditsia triacanthos (Honey locust) invasion on a Pampean Stream. This organism modifies the temperature and the light reaching the stream. Thermal range shows significant differences between reaches but mean tem between 85 and 95 % down the trees. These modifications reduce the primary gross production of 2.7 to 1.7 g 02. M"2 at spring and of 25 to 20 g 02. M"2 at summer. Respiration in spring and summer is halved at invaded reaches, but net ecosystem metabolism is similar in both reach and seasons. Moreover, the reach invaded by honey locust show scarce macrophytes. We argue that the honey locust reduces the diversity by reduction of macrophytes and their associated organisms but also reduce the primary production causing changes in the food web

  12. The role of remediation, natural alkalinity sources and physical stream parameters in stream recovery.

    Science.gov (United States)

    Kruse, Natalie A; DeRose, Lisa; Korenowsky, Rebekah; Bowman, Jennifer R; Lopez, Dina; Johnson, Kelly; Rankin, Edward

    2013-10-15

    Acid mine drainage (AMD) negatively impacts not only stream chemistry, but also aquatic biology. The ultimate goal of AMD treatment is restoration of the biological community, but that goal is rarely explicit in treatment system design. Hewett Fork in Raccoon Creek Watershed, Ohio, has been impacted by historic coal mining and has been treated with a calcium oxide doser in the headwaters of the watershed since 2004. All of the acidic inputs are isolated to a 1.5 km stretch of stream in the headwaters of the Hewett Fork watershed. The macroinvertebrate and fish communities have begun to recover and it is possible to distinguish three zones downstream of the doser: an impaired zone, a transition zone and a recovered zone. Alkalinity from both the doser and natural sources and physical stream parameters play a role in stream restoration. In Hewett Fork, natural alkaline additions downstream are higher than those from the doser. Both, alkaline additions and stream velocity drive sediment and metal deposition. Metal deposition occurs in several patterns; aluminum tends to deposit in regions of low stream velocity, while iron tends to deposit once sufficient alkalinity is added to the system downstream of mining inputs. The majority of metal deposition occurs upstream of the recovered zone. Both the physical stream parameters and natural alkalinity sources influence biological recovery in treated AMD streams and should be considered in remediation plans. Copyright © 2013 Elsevier Ltd. All rights reserved.

  13. Geological differentiation explains diversity and composition of fish communities in upland streams in the southern Amazon of Colombia

    NARCIS (Netherlands)

    Arbeláez, F.; Duivenvoorden, J.F.; Maldonado-Ocampo, J.A.

    2008-01-01

    Fish biomass, species richness and composition were compared between upland streams draining two contrasting geological units (Pebas and Tsa) in Colombian Amazonia. Because Pebas sediments reportedly show higher levels of base concentrations than Tsa sediments, we expected that the fish communities

  14. Diet and trophic groups of an aquatic insect community in a tropical stream

    Directory of Open Access Journals (Sweden)

    R. L. Motta

    Full Text Available The diet and trophic groups of an assemblage of aquatic insects were studied in a tropical stream. Genera of the orders Ephemeroptera, Odonata, Plecoptera, Lepidoptera, and Hemiptera showed feeding specialization. Others, such as Trichoptera, Coleoptera, and Diptera, showed great diet variation with genera of different trophic groups. Seasonal variation of insect diet, evident only for some genera of the orders Trichoptera, Lepidoptera, Coleoptera, and Diptera, was due to the differences observed in community composition and to generalist habits of these genera. However, the seasonal comparison of trophic groups showed no significant statistical differences. The great importance of organic matter, a non-limited resource, in the diet of Ribeirão do Atalho aquatic insects may be the explanation for the trophic stability in this community organization.

  15. Convergent evolution of modularity in metabolic networks through different community structures

    Directory of Open Access Journals (Sweden)

    Zhou Wanding

    2012-09-01

    Full Text Available Abstract Background It has been reported that the modularity of metabolic networks of bacteria is closely related to the variability of their living habitats. However, given the dependency of the modularity score on the community structure, it remains unknown whether organisms achieve certain modularity via similar or different community structures. Results In this work, we studied the relationship between similarities in modularity scores and similarities in community structures of the metabolic networks of 1021 species. Both similarities are then compared against the genetic distances. We revisited the association between modularity and variability of the microbial living environments and extended the analysis to other aspects of their life style such as temperature and oxygen requirements. We also tested both topological and biological intuition of the community structures identified and investigated the extent of their conservation with respect to the taxomony. Conclusions We find that similar modularities are realized by different community structures. We find that such convergent evolution of modularity is closely associated with the number of (distinct enzymes in the organism’s metabolome, a consequence of different life styles of the species. We find that the order of modularity is the same as the order of the number of the enzymes under the classification based on the temperature preference but not on the oxygen requirement. Besides, inspection of modularity-based communities reveals that these communities are graph-theoretically meaningful yet not reflective of specific biological functions. From an evolutionary perspective, we find that the community structures are conserved only at the level of kingdoms. Our results call for more investigation into the interplay between evolution and modularity: how evolution shapes modularity, and how modularity affects evolution (mainly in terms of fitness and evolvability. Further, our results

  16. Convergent evolution of modularity in metabolic networks through different community structures.

    Science.gov (United States)

    Zhou, Wanding; Nakhleh, Luay

    2012-09-14

    It has been reported that the modularity of metabolic networks of bacteria is closely related to the variability of their living habitats. However, given the dependency of the modularity score on the community structure, it remains unknown whether organisms achieve certain modularity via similar or different community structures. In this work, we studied the relationship between similarities in modularity scores and similarities in community structures of the metabolic networks of 1021 species. Both similarities are then compared against the genetic distances. We revisited the association between modularity and variability of the microbial living environments and extended the analysis to other aspects of their life style such as temperature and oxygen requirements. We also tested both topological and biological intuition of the community structures identified and investigated the extent of their conservation with respect to the taxonomy. We find that similar modularities are realized by different community structures. We find that such convergent evolution of modularity is closely associated with the number of (distinct) enzymes in the organism's metabolome, a consequence of different life styles of the species. We find that the order of modularity is the same as the order of the number of the enzymes under the classification based on the temperature preference but not on the oxygen requirement. Besides, inspection of modularity-based communities reveals that these communities are graph-theoretically meaningful yet not reflective of specific biological functions. From an evolutionary perspective, we find that the community structures are conserved only at the level of kingdoms. Our results call for more investigation into the interplay between evolution and modularity: how evolution shapes modularity, and how modularity affects evolution (mainly in terms of fitness and evolvability). Further, our results call for exploring new measures of modularity and network

  17. Comparing Metabolic Functionalities, Community Structures, and Dynamics of Herbicide-Degrading Communities Cultivated with Different Substrate Concentrations

    DEFF Research Database (Denmark)

    Gözdereliler, Erkin; Boon, Nico; Aamand, Jens

    2013-01-01

    Two 4-chloro-2-methylphenoxyacetic acid (MCPA)-degrading enrichment cultures selected from an aquifer on low (0.1 mg liter−1) or high (25 mg liter−1) MCPA concentrations were compared in terms of metabolic activity, community composition, population growth, and single cell physiology. Different...... community compositions and major shifts in community structure following exposure to different MCPA concentrations were observed using both 16S rRNA gene denaturing gradient gel electrophoresis fingerprinting and pyrosequencing. The communities also differed in their MCPA-mineralizing activities...... activity in cultures selected on low herbicide concentrations. This suggests that LNA bacteria may play a role in degradation of low herbicide concentrations in aquifers impacted by agriculture. This study shows that subpopulations of herbicide-degrading bacteria that are adapted to different pesticide...

  18. The influence of multiple chemical and non-chemical stressors on benthic communities in a mid-west agricultural stream.

    Science.gov (United States)

    Hall, Lenwood W; Killen, Willian D; Anderson, Ronald D; Alden, Raymond W

    2017-08-24

    The objective of this 3-year study was to characterize benthic communities and physical habitat in an agricultural stream in the mid-west area of the United States (Big Bureau Creek, Illinois). Concurrent basic water quality parameters and seven nutrients were measured in the water column. Sediment measurements from depositional areas were conducted for bifenthrin, Total Organic Carbon, grain size, polychlorinated biphenyls (PCBs) and eight metals. All parameters were measured at 12 sites annually during the late summer for a 3-year period (2014, 2015 and 2016). Univariate regressions, stepwise multiple regressions and canonical correlation statistical analyses were used to determine the relationship between various benthic metrics (i.e., taxa richness and abundance) and all the measured parameters for the 3-year database. Benthic communities comprising 108-110 taxa were collected annually, and were generally dominated by sensitive caddisflies and mayflies. These communities were rated as good to exceptional using the Ohio Invertebrate Community Index. Physical habitat for the various sites was rated as good using the Ohio Qualitative Habitat Evaluation Index, thus suggesting that habitat is not a significant stressor that would likely impact resident benthic communities. Based on a comparison of measured in-stream total nitrogen and total phosphorus concentrations and criterion value exceedances, it appears that the in-stream nutrient concentrations could be potentially stressful to resident benthic biota. Metal concentrations were below established NOAA Threshold Effects Levels at all sites. Measured PCB concentrations were below levels of detection at all sites. Toxic units' (TUs) calculations based on using sensitive laboratory strains of Hyalella were less than 0.1 for bifenthrin, thus suggesting that bifenthrin sediment toxicity was unlikely. Thirty significant relationships reported between benthic metrics and the various environmental variables based on the

  19. Detection of Metabolism Function of Microbial Community of Corpses by Biolog-Eco Method.

    Science.gov (United States)

    Jiang, X Y; Wang, J F; Zhu, G H; Ma, M Y; Lai, Y; Zhou, H

    2016-06-01

    To detect the changes of microbial community functional diversity of corpses with different postmortem interval (PMI) and to evaluate forensic application value for estimating PMI. The cultivation of microbial community from the anal swabs of a Sus scrofa and a human corpse placed in field environment from 0 to 240 h after death was performed using the Biolog-Eco Microplate and the variations of the absorbance values were also monitored. Combined with the technology of forensic pathology and flies succession, the metabolic characteristics and changes of microbial community on the decomposed corpse under natural environment were also observed. The diversity of microbial metabolism function was found to be negatively correlated with the number of maggots in the corpses. The freezing processing had the greatest impact on average well color development value at 0 h and the impact almost disappeared after 48 h. The diversity of microbial metabolism of the samples became relatively unstable after 192 h. The principal component analysis showed that 31 carbon sources could be consolidated for 5 principal components (accumulative contribution ratio >90%).The carbon source tsquare-analysis showed that N -acetyl- D -glucosamine and L -serine were the dominant carbon sources for estimating the PMI (0=240 h) of the Sus scrofa and human corpse. The Biolog-Eco method can be used to reveal the metabolic differences of the carbon resources utilization of the microbial community on the corpses during 0-240 h after death, which could provide a new basis for estimating the PMI. Copyright© by the Editorial Department of Journal of Forensic Medicine

  20. Dynamics of Panax ginseng Rhizospheric Soil Microbial Community and Their Metabolic Function

    Directory of Open Access Journals (Sweden)

    Yong Li

    2014-01-01

    Full Text Available The bacterial communities of 1- to 6-year ginseng rhizosphere soils were characterized by culture-independent approaches, random amplified polymorphic DNA (RAPD, and amplified ribosomal DNA restriction analysis (ARDRA. Culture-dependent method (Biolog was used to investigate the metabolic function variance of microbe living in rhizosphere soil. Results showed that significant genetic and metabolic function variance were detected among soils, and, with the increasing of cultivating years, genetic diversity of bacterial communities in ginseng rhizosphere soil tended to be decreased. Also we found that Verrucomicrobia, Acidobacteria, and Proteobacteria were the dominants in rhizosphere soils, but, with the increasing of cultivating years, plant disease prevention or plant growth promoting bacteria, such as Pseudomonas, Burkholderia, and Bacillus, tended to be rare.

  1. Net Community Metabolism and Seawater Carbonate Chemistry Scale Non-intuitively with Coral Cover

    Directory of Open Access Journals (Sweden)

    Heather N. Page

    2017-05-01

    Full Text Available Coral cover and reef health have been declining globally as reefs face local and global stressors including higher temperature and ocean acidification (OA. Ocean warming and acidification will alter rates of benthic reef metabolism (i.e., primary production, respiration, calcification, and CaCO3 dissolution, but our understanding of community and ecosystem level responses is limited in terms of functional, spatial, and temporal scales. Furthermore, dramatic changes in coral cover and benthic metabolism could alter seawater carbonate chemistry on coral reefs, locally alleviating or exacerbating OA. This study examines how benthic metabolic rates scale with changing coral cover (0–100%, and the subsequent influence of these coral communities on seawater carbonate chemistry based on mesocosm experiments in Bermuda and Hawaii. In Bermuda, no significant differences in benthic metabolism or seawater carbonate chemistry were observed for low (40% and high (80% coral cover due to large variability within treatments. In contrast, significant differences were detected between treatments in Hawaii with benthic metabolic rates increasing with increasing coral cover. Observed increases in daily net community calcification and nighttime net respiration scaled proportionally with coral cover. This was not true for daytime net community organic carbon production rates, which increased the most between 0 and 20% coral cover and then less so between 20 and 100%. Consequently, diel variability in seawater carbonate chemistry increased with increasing coral cover, but absolute values of pH, Ωa, and pCO2 were not significantly different during daytime. To place the results of the mesocosm experiments into a broader context, in situ seawater carbon dioxide (CO2 at three reef sites in Bermuda and Hawaii were also evaluated; reefs with higher coral cover experienced a greater range of diel CO2 levels, complementing the mesocosm results. The results from this study

  2. Organism-substrate relationships in lowland streams

    NARCIS (Netherlands)

    Tolkamp, H.H.

    1980-01-01

    A field and laboratory study on the microdistribution of bottom dwelling macroinvertebrates to investigate the role of the stream substrate In the development and preservation of the macroinvertebrate communities in natural, undisturbed lowland streams is described. Field data on bottom substrates

  3. The Midwest Stream Quality Assessment—Influences of human activities on streams

    Science.gov (United States)

    Van Metre, Peter C.; Mahler, Barbara J.; Carlisle, Daren M.; Coles, James F.

    2018-04-16

    Healthy streams and the fish and other organisms that live in them contribute to our quality of life. Extensive modification of the landscape in the Midwestern United States, however, has profoundly affected the condition of streams. Row crops and pavement have replaced grasslands and woodlands, streams have been straightened, and wetlands and fields have been drained. Runoff from agricultural and urban land brings sediment and chemicals to streams. What is the chemical, physical, and biological condition of Midwestern streams? Which physical and chemical stressors are adversely affecting biological communities, what are their origins, and how might we lessen or avoid their adverse effects?In 2013, the U.S. Geological Survey (USGS) conducted the Midwest Stream Quality Assessment to evaluate how human activities affect the biological condition of Midwestern streams. In collaboration with the U.S. Environmental Protection Agency National Rivers and Streams Assessment, the USGS sampled 100 streams, chosen to be representative of the different types of watersheds in the region. Biological condition was evaluated based on the number and diversity of fish, algae, and invertebrates in the streams. Changes to the physical habitat and chemical characteristics of the streams—“stressors”—were assessed, and their relation to landscape factors and biological condition was explored by using mathematical models. The data and models help us to better understand how the human activities on the landscape are affecting streams in the region.

  4. Characterizing Urban Household Waste Generation and Metabolism Considering Community Stratification in a Rapid Urbanizing Area of China.

    Science.gov (United States)

    Xiao, Lishan; Lin, Tao; Chen, Shaohua; Zhang, Guoqin; Ye, Zhilong; Yu, Zhaowu

    2015-01-01

    The relationship between social stratification and municipal solid waste generation remains uncertain under current rapid urbanization. Based on a multi-object spatial sampling technique, we selected 191 households in a rapidly urbanizing area of Xiamen, China. The selected communities were classified into three types: work-unit, transitional, and commercial communities in the context of housing policy reform in China. Field survey data were used to characterize household waste generation patterns considering community stratification. Our results revealed a disparity in waste generation profiles among different households. The three community types differed with respect to family income, living area, religious affiliation, and homeowner occupation. Income, family structure, and lifestyle caused significant differences in waste generation among work-unit, transitional, and commercial communities, respectively. Urban waste generation patterns are expected to evolve due to accelerating urbanization and associated community transition. A multi-scale integrated analysis of societal and ecosystem metabolism approach was applied to waste metabolism linking it to particular socioeconomic conditions that influence material flows and their evolution. Waste metabolism, both pace and density, was highest for family structure driven patterns, followed by lifestyle and income driven. The results will guide community-specific management policies in rapidly urbanizing areas.

  5. [Metabolic syndrome in adults from 20 to 40 years old in a rural Mexican community].

    Science.gov (United States)

    Echavarría-Pinto, Mauro; Hernández-Lomelí, Adrián; Alcocer-Gamba, Marco Antonio; Morales-Flores, Héctor; Vázquez-Mellado, Alberto

    2006-01-01

    Metabolic syndrome is the main health problem in Mexico. Its two principal complications (ischemic cardiopathy and type-2 diabetes) are the two main causes of death in Mexico since 2000. To describe the prevalence of the metabolic syndrome in adults from 20 to 40 years old in a Mexican rural community (Senegal de Palomas, San Juan del Río, Querétaro) using the National Cholesterol Education Program (NCEP III) definition. A descriptive study with a random sample was carried out. We present a univariate analysis with a 95% confidence interval. 73 cases were studied. The prevalence of the metabolic syndrome was 45.2% slightly higher in men (48.4%) than in women (42.8%). The prevalence of hypertension was 27.3%. The prevalence of obesity was 26.1% using the definition of the WHO and this prevalence rises up to 49.4% using the definition of the Mexican Official Norm. 90.5% of women and 93.5% of men had low HDLc. The prevalence of metabolic syndrome in adults from 20 to 40 years old in this Mexican rural community is much higher than the national mean for the same age cohort. The results show the necessity to increase the research of our rural communities in order to identify the possible causes to this problem and to create therapeutic programs for patients with metabolic syndrome.

  6. Characterizing Urban Household Waste Generation and Metabolism Considering Community Stratification in a Rapid Urbanizing Area of China.

    Directory of Open Access Journals (Sweden)

    Lishan Xiao

    Full Text Available The relationship between social stratification and municipal solid waste generation remains uncertain under current rapid urbanization. Based on a multi-object spatial sampling technique, we selected 191 households in a rapidly urbanizing area of Xiamen, China. The selected communities were classified into three types: work-unit, transitional, and commercial communities in the context of housing policy reform in China. Field survey data were used to characterize household waste generation patterns considering community stratification. Our results revealed a disparity in waste generation profiles among different households. The three community types differed with respect to family income, living area, religious affiliation, and homeowner occupation. Income, family structure, and lifestyle caused significant differences in waste generation among work-unit, transitional, and commercial communities, respectively. Urban waste generation patterns are expected to evolve due to accelerating urbanization and associated community transition. A multi-scale integrated analysis of societal and ecosystem metabolism approach was applied to waste metabolism linking it to particular socioeconomic conditions that influence material flows and their evolution. Waste metabolism, both pace and density, was highest for family structure driven patterns, followed by lifestyle and income driven. The results will guide community-specific management policies in rapidly urbanizing areas.

  7. Using fish communities to assess streams in Romania: Initial development of an index of biotic integrity

    Science.gov (United States)

    Angermeier, P.L.; Davideanu, G.

    2004-01-01

    Multimetric biotic indices increasingly are used to complement physicochemical data in assessments of stream quality. We initiated development of multimetric indices, based on fish communities, to assess biotic integrity of streams in two physiographic regions of central Romania. Unlike previous efforts to develop such indices for European streams, our metrics and scoring criteria were selected largely on the basis of empirical relations in the regions of interest. We categorised 54 fish species with respect to ten natural-history attributes, then used this information to compute 32 candidate metrics of five types (taxonomic, tolerance, abundance, reproductive, and feeding) for each of 35 sites. We assessed the utility of candidate metrics for detecting anthropogenic impact based on three criteria: (a) range of values taken, (b) relation to a site-quality index (SQI), which incorporated information on hydrologic alteration, channel alteration, land-use intensity, and water chemistry, and (c) metric redundancy. We chose seven metrics from each region to include in preliminary multimetric indices (PMIs). Both PMIs included taxonomic, tolerance, and feeding metrics, but only two metrics were common to both PMIs. Although we could not validate our PMIs, their strong association with the SQI in each region suggests that such indices would be valuable tools for assessing stream quality and could provide more comprehensive assessments than the traditional approaches based solely on water chemistry.

  8. Introduction to stream: An Extensible Framework for Data Stream Clustering Research with R

    Directory of Open Access Journals (Sweden)

    Michael Hahsler

    2017-02-01

    Full Text Available In recent years, data streams have become an increasingly important area of research for the computer science, database and statistics communities. Data streams are ordered and potentially unbounded sequences of data points created by a typically non-stationary data generating process. Common data mining tasks associated with data streams include clustering, classification and frequent pattern mining. New algorithms for these types of data are proposed regularly and it is important to evaluate them thoroughly under standardized conditions. In this paper we introduce stream, a research tool that includes modeling and simulating data streams as well as an extensible framework for implementing, interfacing and experimenting with algorithms for various data stream mining tasks. The main advantage of stream is that it seamlessly integrates with the large existing infrastructure provided by R. In addition to data handling, plotting and easy scripting capabilities, R also provides many existing algorithms and enables users to interface code written in many programming languages popular among data mining researchers (e.g., C/C++, Java and Python. In this paper we describe the architecture of stream and focus on its use for data stream clustering research. stream was implemented with extensibility in mind and will be extended in the future to cover additional data stream mining tasks like classification and frequent pattern mining.

  9. Stream habitat structure influences macroinvertebrate response to pesticides

    DEFF Research Database (Denmark)

    Rasmussen, Jes; Wiberg-Larsen, Peter; Baattrup-Pedersen, Annette

    2012-01-01

    Agricultural pesticide contamination in surface waters is increasingly threatening to impair the surface water ecosystems. Agricultural streams are furthermore often heavily maintained to optimise the transport of water away from fields. The physical habitat degradation that result from heavy...... stream maintenance probably introduce additional stress that may act in concert with pesticide stress. We surveyed pesticide contamination and macroinvertebrate community structure in 14 streams along a gradient of expected pesticide exposure. A paired-reach approach was applied to differentiate...... the effects of pesticides between sites with degraded and more undisturbed physical properties. The effect of pesticides on macroinvertebrate communities (measured as the relative abundance of SPEcies At Risk) was increased at stream sites with degraded physical habitats primarily due to the absence...

  10. Metabolic Syndrome and 16-year Cognitive Decline in Community-Dwelling Older Adults

    Science.gov (United States)

    McEvoy, Linda K.; Laughlin, Gail A.; Barrett-Connor, Elizabeth; Bergstrom, Jaclyn; Kritz-Silverstein, Donna; Der-Martirosian, Claudia; von Mühlen, Denise

    2012-01-01

    PURPOSE To determine whether metabolic syndrome is associated with accelerated cognitive decline in community-dwelling older adults. METHODS Longitudinal study of 993 adults (mean 66.8 ± 8.7 years) from the Rancho Bernardo Study. Metabolic syndrome components, defined by 2001 NCEP-ATP III criteria, were measured in 1984–87. Cognitive function was first assessed in 1988–92. Cognitive assessments were repeated approximately every four years, for a maximum 16-year follow-up. Mixed-effects models examined longitudinal rate of cognitive decline by metabolic syndrome status, controlling for factors plausibly associated with cognitive function (diabetes, inflammation). RESULTS Metabolic syndrome was more common in men than women (14% vs. 9%, p=0.01). In women, metabolic syndrome was associated with greater executive function and long term memory decline. These associations did not differ by inflammatory biomarker levels. Diabetes did not alter the association of metabolic syndrome with long-term recall but modified the association with executive function: metabolic syndrome was associated with accelerated executive function decline in diabetic women only. Metabolic syndrome was not related to rate of decline on any cognitive measure in men. CONCLUSIONS Metabolic syndrome was a risk factor for accelerated cognitive decline, but only in women. Prevention of metabolic syndrome may aid in maintenance of cognitive function with age. PMID:22285865

  11. Effects of logging on macroinvertebrates in streams with and without buffer strips

    Energy Technology Data Exchange (ETDEWEB)

    Newbold, J D; Erman, D C; Roby, K B

    1980-01-01

    The impact of logging with and without buffer strip protection on stream macroinvertebrates was examined through comparisons of community structure in commercially logged and control watersheds throughout northern California. A nonparametric test of community dissimilarities within matched blocks of two control and one or two treated stations showed significant (P < 0.05) logging effects on unprotected streams when Euclidean distance and mutual information were used as dissimilarity indices, but not when chord distance was used. Shannon diversity in unprotected streams was lower (P < 0.01) than in control (unlogged) streams; densities of total macroinvertebrate fauna and of Chironomidae, Baetis, and Nemoura were higher in unprotected streams than in controls (P <0.05). Streams with narrow buffer strips (<30 m) showed significant effects by the Euclidean distance test, but diversity varied widely and was not significantly different from that in either unprotected or control streams than in controls (P < 0.05). Macroinvertebrate communities in streams with wide buffers (greater than or equal to 30m) could not be distinguished from those of controls by either Euclidean distance or diversity; however, diversity in wide-buffered streams was significantly greater than in streams without buffer strips, indicating effective protection from logging effects.

  12. Urban development results in stressors that degrade stream ecosystems

    Science.gov (United States)

    Bell, Amanda H.; Coles, James F.; McMahon, Gerard; Woodside, Michael D.

    2012-01-01

    In 2003, eighty-three percent of Americans lived in metropolitan areas, and considerable population increases are predicted within the next 50 years. Nowhere are the environmental changes associated with urban development more evident than in urban streams. Contaminants, habitat destruction, and increasing streamflow flashiness resulting from urban development have been associated with the disruption of biological communities, particularly the loss of sensitive aquatic biota. Every stream is connected downstream to other water bodies, and inputs of contaminants and (or) sediments to streams can cause degradation downstream with adverse effects on biological communities and on economically valuable resources, such as fisheries and tourism. Understanding how algal, invertebrate, and fish communities respond to physical and chemical stressors associated with urban development can provide important clues on how multiple stressors may be managed to protect stream health as a watershed becomes increasingly urbanized. This fact sheet highlights selected findings of a comprehensive assessment by the National Water-Quality Assessment Program of the U.S. Geological Survey (USGS) of the effects of urban development on stream ecosystems in nine metropolitan study areas.

  13. Volunteer stream monitoring: Do the data quality and monitoring experience support increased community involvement in freshwater decision making?

    Directory of Open Access Journals (Sweden)

    Richard G. Storey

    2016-12-01

    Full Text Available Recent freshwater policy reforms in New Zealand promote increased community involvement in freshwater decision making and management. Involving community members in scientific monitoring increases both their knowledge and their ability to discuss this knowledge with professionals, potentially increasing their influence in decision-making processes. However, these interactions rarely occur because, in particular, of perceptions that volunteer-collected data are unreliable. We assessed the agreement between volunteer (community group and local government (regional council data at nine stream sites across New Zealand. Over 18 months, community groups and regional council staff monitored, in parallel, a common set of water quality variables, physical habitat, periphyton and benthic macroinvertebrates that are routinely used by regional councils for statutory state of environment reporting. Community groups achieved close agreement (correlations ≥ 0.89, bias < 1% with regional councils for temperature, electrical conductivity, visual water clarity, and Escherichia coli. For dissolved oxygen, nitrate, and pH, correlations were weaker (0.2, 0.53, and 0.4, respectively. Volunteer assessments of physical habitat were as consistent over time as those of councils. For visual assessments of thick periphyton growths (% streambed cover, volunteers achieved a correlation of 0.93 and bias of 0.1% relative to councils. And for a macroinvertebrate biotic index that indicates water and habitat quality, correlation was 0.88, bias was < 5%, and the average difference was 12% of the index score. Volunteers showed increased awareness of local freshwaters, understanding of stream ecosystems, and attentiveness to local and national freshwater issues. Most volunteers had shared their knowledge and interest with others in their community. Most groups had developed relationships with their regional council, and some volunteers became more interested in engaging in

  14. Isolating the impact of sediment toxicity in urban streams

    International Nuclear Information System (INIS)

    Marshall, Stephen; Pettigrove, Vincent; Carew, Melissa; Hoffmann, Ary

    2010-01-01

    Several factors can contribute to the ecological degradation of stream catchments following urbanization, but it is often difficult to separate their relative importance. We isolated the impact of polluted sediment on the condition of an urban stream in Melbourne, Australia, using two complementary approaches. Using a rapid bioassessment approach, indices of stream condition were calculated based on macroinvertebrate field surveys. Urban stream reaches supported impoverished macroinvertebrate communities, and contained potentially toxic concentrations of heavy metals and hydrocarbons. Using a field microcosm approach, a bioassay was carried out to assess sediment pollution effects on native macroinvertebrates. Sediment from urban sites substantially altered the microcosm macroinvertebrate community, most likely due to elevated heavy metal and hydrocarbon concentrations. Macroinvertebrate surveys combined with a bioassay approach based on field microcosms can help isolate the effect of stream pollutants in degraded ecosystems. - Field microcosms isolate the ecological impact of polluted sediment in an urban stream.

  15. Persistent effects of acidification on stream ecosystem structure and function

    Czech Academy of Sciences Publication Activity Database

    Traister, E.; McDowell, W. H.; Krám, Pavel; Fottová, Daniela; Kolaříková, K.

    2013-01-01

    Roč. 32, č. 2 (2013), s. 586-596 ISSN 2161-9565 R&D Projects: GA MŠk(CZ) ED1.1.00/02.0073 Institutional support: RVO:67179843 Keywords : acidification * macroinvertebrates * whole-stream metabolism * streams * isotopic signature * terrestrial detritus * periphyton * GEOMON Subject RIV: EH - Ecology, Behaviour

  16. Stream invertebrate productivity linked to forest subsidies: 37 stream-years of reference and experimental data.

    Science.gov (United States)

    Wallace, J Bruce; Eggert, Susan L; Meyer, Judy L; Webster, Jackson R

    2015-05-01

    Riparian habitats provide detrital subsidies of varying quantities and qualities to recipient ecosystems. We used long-term data from three reference streams (covering 24 stream-years) and 13-year whole-stream organic matter manipulations to investigate the influence of terrestrial detrital quantity and quality on benthic invertebrate community structure, abundance, biomass, and secondary production in rockface (RF) and mixed substrates (MS) of forested headwater streams. Using a mesh canopy covering the entire treatment stream, we examined effects of litter ex'clusion, small- and large-wood removal, and addition of artificial wood (PVC) and leaves of varying quality on organic matter standing crops and invertebrate community structure and function. We assessed differences in functional feeding group distribution between substrate types as influenced by organic matter manipulations and long-term patterns of predator and prey production in manipulated vs. reference years. Particulate organic matter standing crops in MS of the treatment stream declined drastically with each successive year of litter exclusion, approaching zero after three years. Monthly invertebrate biomass and annual secondary production was positively related to benthic organic matter in the MS habitats. Rockface habitats exhibited fewer changes than MS habitats across all organic matter manipulations. With leaf addition, the patterns of functional group distribution among MS and RF habitats returned to patterns seen in reference streams. Secondary production per unit organic matter standing crop was greatest for the leaf addition period, followed by the reference streams, and significantly less for the litter exclusion and wood removal periods. These data indicate that the limited organic matter remaining in the stream following litter exclusion and wood removal was more refractory than that in the reference streams, whereas the added leaf material was more labile and readily converted into

  17. National Institutes of Health: Mixed waste stream analysis

    International Nuclear Information System (INIS)

    Kirner, N.P.; Faison, G.P.; Johnson, D.R.

    1994-08-01

    The Low-Level Radioactive Waste Policy Amendments Act of 1985 requires that the US Department of Energy (DOE) provide technical assistance to host States, compact regions, and unaffiliated States to fulfill their responsibilities under the Act. The National Low-Level Waste Management Program (NLLWMP) operated for DOE by EG ampersand G Idaho, Inc. provides technical assistance in the development of new commercial low-level radioactive waste disposal capacity. The NLLWMP has been requested by the Appalachian Compact to help the biomedical community become better acquainted with its mixed waste streams, to help minimize the mixed waste streams generated by the biomedical community, and to provide applicable treatment technologies to those particular mixed waste streams. Mixed waste is waste that satisfies the definition of low-level radioactive waste (LLW) in the Low-Level Radioactive Waste Policy Act of 1980 (LLRWPA) and contains hazardous waste that either (a) is listed as a hazardous waste in Subpart D of 40 CFR 261, or (b) causes the LLW to exhibit any of the hazardous waste characteristics identified in 40 CFR 261. The purpose of this report is to clearly define and characterize the mixed waste streams generated by the biomedical community so that an identification can be made of the waste streams that can and cannot be minimized and treated by current options. An understanding of the processes and complexities of generation of mixed waste in the biomedical community may encourage more treatment and storage options to become available

  18. Isonychia spp. and macroinvertebrate community responses to stressors in streams utilizing the benthic in situ toxicity identification evaluation (BiTIE) method

    International Nuclear Information System (INIS)

    Custer, Kevin W.; Burton, G. Allen

    2008-01-01

    Exposures of caged organisms in situ have proven to be a useful way to improve exposure realism and link to stressor effects in aquatic assessments of hazard or risk. A novel cage system, the benthic in situ toxicity identification evaluation (BiTIE), was developed for benthic macroinvertebrates (surrogate species, resident populations and communities) to separate low and high flow effects, and major chemical classes of stressors in streams. Three resin types were used to separate the chemical stressors in the streams Honey Creek and Little Beavercreek, Ohio, USA: Dowex TM Optipore TM (non-polar organics), zeolite (ammonia), and polywool (control). Isonychia spp. sensitivity was compared to Chironomus tentans, and no significant differences were found (p > 0.05). Isonychia spp. growth (length) showed a stressor response in the zeolite treatments, and community testing revealed improved metric responses in the Dowex TM treatments. The BiTIE chamber system demonstrated stressor-response relationships using sublethal and multimetric endpoints. - Use of an indigenous aquatic insect and benthic macroinvertebrate communities allows for discerning the stressors in low and high flows with an in situ TIE approach

  19. Ecological distribution of stream macroalgal communities from a drainage basin in the Serra da Canastra National Park, Minas Gerais, Southeastern Brazil

    Directory of Open Access Journals (Sweden)

    Necchi-Júnior O.

    2003-01-01

    Full Text Available Twelve stream segments were sampled four times in 1998-1999 (one sampling per season in the drainage basin of the upper São Francisco River (19º45'-21º25'S, 49º05'-51º30'W, situated in Serra da Canastra National Park, at altitudes ranging from 1,175 to 1,400 m. The macroalgae survey resulted in 30 species, with a predominance of Cyanophyta (12 species = 40% and Chlorophyta (11 species = 36.5% and a lower proportion of Rhodophyta (seven species = 23.5%. Two species, Klebsormidium rivulare (Chlorophyta and Kyliniella latvica (Rhodophyta, were new records for Brazil. Capsosira sp. and Stigonema sp. (Cyanophyta and the "Chantransia" stage of Batrachospermum (Rhodophyta were the most widespread macroalgae, occurring in six sampling sites, whereas 11 species were found at only one site. The proportion of macroalgal morphological types were as follows: mats (33%, free filaments (27%, gelatinous filaments (27%, crusts (7%, tufts (3%, and gelatinous colonies (3%. The flora revealed few species in common (4%-8% with stream macroalgae from other Brazilian regions. The macroalgal communities proved to have species richness values close to the highest values reported in previous studies. The patterns typical for stream macroalgal communities (patchy distribution and dominance of few species were also found in this basin. However, the stream variables most influential in macroalgal distribution in this study (rocky substratum, low pH, high COD, water color, and current velocity were essentially the same that best describe the limnological characteristics of this lotic ecosystem. In addition, this combination of variables differed sharply from results of previous studies in other Brazilian stream ecosystems.

  20. Reach-scale stream restoration in agricultural streams of southern Minnesota alters structural and functional responses of macroinvertebrates

    Science.gov (United States)

    Dolph, Christine L.; Eggert, Susan L.; Magner, Joe; Ferrington, Leonard C.; Vondracek, Bruce C.

    2015-01-01

    Recent studies suggest that stream restoration at the reach scale may not increase stream biodiversity, raising concerns about the utility of this conservation practice. We examined whether reach-scale restoration in disturbed agricultural streams was associated with changes in macroinvertebrate community structure (total macroinvertebrate taxon richness, total macroinvertebrate density, Ephemeroptera, Plecoptera, Trichoptera [EPT] taxon richness, % abundance of EPT taxa) or secondary production (macroinvertebrate biomass over time). We collected macroinvertebrate samples over the course of 1 y from restored and unrestored reaches of 3 streams in southern Minnesota and used generalized least-square (GLS) models to assess whether measures of community structure were related to reach type, stream site, or sampling month. After accounting for effects of stream site and time, we found no significant difference in total taxon richness or % abundance of EPT taxa between restored and unrestored reaches. However, the number of EPT taxa and macroinvertebrate density were significantly higher in restored than in unrestored reaches. We compared secondary production estimates among study reaches based on 95th-percentile confidence intervals generated via bootstrapping. In each study stream, secondary production was significantly (2–3×) higher in the restored than in the unrestored reach. Higher productivity in the restored reaches was largely a result of the disproportionate success of a few dominant, tolerant taxa. Our findings suggest that reach-scale restoration may have ecological effects that are not detected by measures of total taxon richness alone.

  1. The Pacific northwest stream quality assessment

    Science.gov (United States)

    Van Metre, Peter C.; Morace, Jennifer L.; Sheibley, Rich W.

    2015-01-01

    In 2015, the U.S. Geological Survey (USGS) National Water-Quality Assessment (NAWQA) program is assessing stream quality in the Pacific Northwest. The goals of the Pacific Northwest Stream Quality Assessment (Pacific Northwest study) are to assess the quality of streams in the region by characterizing multiple water-quality factors that are stressors to aquatic life and to evaluate the relation between these stressors and biological communities. The effects of urbanization and agriculture on stream quality for the Puget Lowlands and Willamette Valley are the focus of this regional study. Findings will provide the public and policymakers with information regarding which human and environmental factors are the most critical in affecting stream quality and, thus, provide insights about possible approaches to protect or improve the health of streams in the region.

  2. The electric picnic: synergistic requirements for exoelectrogenic microbial communities

    KAUST Repository

    Kiely, Patrick D

    2011-06-01

    Characterization of the various microbial populations present in exoelectrogenic biofilms provides insight into the processes required to convert complex organic matter in wastewater streams into electrical current in bioelectrochemical systems (BESs). Analysis of the community profiles of exoelectrogenic microbial consortia in BESs fed different substrates gives a clearer picture of the different microbial populations present in these exoelectrogenic biofilms. Rapid utilization of fermentation end products by exoelectrogens (typically Geobacter species) relieves feedback inhibition for the fermentative consortia, allowing for rapid metabolism of organics. Identification of specific syntrophic processes and the communities characteristic of these anodic biofilms will be a valuable aid in improving the performance of BESs. © 2011 Elsevier Ltd.

  3. Functional Gene Diversity and Metabolic Potential of the Microbial Community in an Estuary-Shelf Environment

    Directory of Open Access Journals (Sweden)

    Yu Wang

    2017-06-01

    Full Text Available Microbes play crucial roles in various biogeochemical processes in the ocean, including carbon (C, nitrogen (N, and phosphorus (P cycling. Functional gene diversity and the structure of the microbial community determines its metabolic potential and therefore its ecological function in the marine ecosystem. However, little is known about the functional gene composition and metabolic potential of bacterioplankton in estuary areas. The East China Sea (ECS is a dynamic marginal ecosystem in the western Pacific Ocean that is mainly affected by input from the Changjiang River and the Kuroshio Current. Here, using a high-throughput functional gene microarray (GeoChip, we analyzed the functional gene diversity, composition, structure, and metabolic potential of microbial assemblages in different ECS water masses. Four water masses determined by temperature and salinity relationship showed different patterns of functional gene diversity and composition. Generally, functional gene diversity [Shannon–Weaner’s H and reciprocal of Simpson’s 1/(1-D] in the surface water masses was higher than that in the bottom water masses. The different presence and proportion of functional genes involved in C, N, and P cycling among the bacteria of the different water masses showed different metabolic preferences of the microbial populations in the ECS. Genes involved in starch metabolism (amyA and nplT showed higher proportion in microbial communities of the surface water masses than of the bottom water masses. In contrast, a higher proportion of genes involved in chitin degradation was observed in microorganisms of the bottom water masses. Moreover, we found a higher proportion of nitrogen fixation (nifH, transformation of hydroxylamine to nitrite (hao and ammonification (gdh genes in the microbial communities of the bottom water masses compared with those of the surface water masses. The spatial variation of microbial functional genes was significantly correlated

  4. Functional differentiation between fish assemblages from forested and deforested streams

    Directory of Open Access Journals (Sweden)

    Fabrício Barreto Teresa

    Full Text Available We tested the hypothesis that streams in deforested areas shelter different fish communities to nearby forested areas, and that these disparities are due to environmental parameters that limit or benefit different species according to their functional traits. We compared the community composition of three south east Brazilian streams flanked by riparian forest with three nearby streams in deforested areas. The following functional traits were considered: diet, habitat use, water flow preference, size, and hypoxia tolerance. Differentiation between forested and deforested streams corresponded with the different contributions of three functional groups. Species reported in the literature to be hypoxia tolerant, and exhibiting a variable combination of the other traits prevailed in deforested streams, although we did not find substantial differences in oxygen levels between forested and deforested streams. In forested streams, benthic species associated with a high water flow and an insectivorous diet were dominant. Changes in streams induced by deforestation which are associated with habitat availability, food resources, and physicochemical conditions appear to restrict the occurrence of specialized species and instead benefit tolerant generalists.

  5. ENVIRONMENTAL FACTORS INFLUENCING THE VEGETATION IN MIDDLE-SIZED STREAMS IN LATVIA

    Directory of Open Access Journals (Sweden)

    L. GRINBERGA

    2011-04-01

    Full Text Available In this study the species diversity and distribution of macrophytes in 131 surveyed sites of middle-sized streams of Latvia were investigated. The aim of the study was to determine the composition of macrophyte vegetation in Latvian streams in relation to the environmental factors (stream width, water depth, substrate type, shading and flow velocity. On the basis of these factors, five major groups of streams were distinguished representing mutually different typical macrophyte communities – (1 fast flowing streams on gravelly and stony substrate, (2 slow flowing streams on gravelly and stony substrate, (3 fast flowing streams on sandy substrate, (4 slow flowing streams on sandy substrate, and (5 streams with soft, silty substrate. Totally, 47 macrophyte taxa were found in the streams. The most common macrophyte species were Nuphar lutea found in 65% of all sites, followed by Sparganium emersum (64%, S. erectum s.l. (48%, Phalaris arundinacea (50%, Alisma plantago-aquatica (54% and Lemna minor (41%. The highest species richness (22 was found in slow flowing streams with gravelly substrate. Species-poor macrophyte communities were characteristic for fast flowing streams on sandy substrate.

  6. ENVIRONMENTAL FACTORS INFLUENCING THE VEGETATION IN MIDDLE-SIZED STREAMS IN LATVIA

    Directory of Open Access Journals (Sweden)

    L. GRINBERGA

    2011-01-01

    Full Text Available In this study the species diversity and distribution of macrophytes in 131 surveyed sites of middle-sized streams of Latvia were investigated. The aim of the study was to determine the composition of macrophyte vegetation in Latvian streams in relation to the environmental factors (stream width, water depth, substrate type, shading and flow velocity. On the basis of these factors, five major groups of streams were distinguished representing mutually different typical macrophyte communities – (1 fast flowing streams on gravelly and stony substrate, (2 slow flowing streams on gravelly and stony substrate, (3 fast flowing streams on sandy substrate, (4 slow flowing streams on sandy substrate, and (5 streams with soft, silty substrate. Totally, 47 macrophyte taxa were found in the streams. The most common macrophyte species were Nuphar lutea found in 65% of all sites, followed by Sparganium emersum (64%, S. erectum s.l. (48%, Phalaris arundinacea (50%, Alisma plantago-aquatica (54% and Lemna minor (41%. The highest species richness (22 was found in slow flowing streams with gravelly substrate. Species-poor macrophyte communities were characteristic for fast flowing streams on sandy substrate.

  7. Unusual metabolic diversity of hyperalkaliphilic microbial communities associated with subterranean serpentinization at The Cedars.

    Science.gov (United States)

    Suzuki, Shino; Ishii, Shun'ichi; Hoshino, Tatsuhiko; Rietze, Amanda; Tenney, Aaron; Morrill, Penny L; Inagaki, Fumio; Kuenen, J Gijs; Nealson, Kenneth H

    2017-11-01

    Water from The Cedars springs that discharge from serpentinized ultramafic rocks feature highly basic (pH=~12), highly reducing (E h serpentinizing system, was dominated by several bacterial taxa from the phyla OD1 ('Parcubacteria') and Chloroflexi. Members of the GPS1 community had, for the most part, the smallest genomes reported for their respective taxa, and encoded only archaeal (A-type) ATP synthases or no ATP synthases at all. Furthermore, none of the members encoded respiration-related genes and some of the members also did not encode key biosynthesis-related genes. In contrast, BS5, fed by shallow water, appears to have a community driven by hydrogen metabolism and was dominated by a diverse group of Proteobacteria similar to those seen in many terrestrial serpentinization sites. Our findings indicated that the harsh ultrabasic geological setting supported unexpectedly diverse microbial metabolic strategies and that the deep-water-fed springs supported a community that was remarkable in its unusual metagenomic and genomic constitution.

  8. Coupling Spatiotemporal Community Assembly Processes to Changes in Microbial Metabolism

    Energy Technology Data Exchange (ETDEWEB)

    Graham, Emily B.; Crump, Alex R.; Resch, Charles T.; Fansler, Sarah; Arntzen, Evan; Kennedy, David W.; Fredrickson, Jim K.; Stegen, James C.

    2016-12-16

    Community assembly processes govern shifts in species abundances in response to environmental change, yet our understanding of assembly remains largely decoupled from ecosystem function. Here, we test hypotheses regarding assembly and function across space and time using hyporheic microbial communities as a model system. We pair sampling of two habitat types through hydrologic fluctuation with null modeling and multivariate statistics. We demonstrate that dual selective pressures assimilate to generate compositional changes at distinct timescales among habitat types, resulting in contrasting associations of Betaproteobacteria and Thaumarchaeota with selection and with seasonal changes in aerobic metabolism. Our results culminate in a conceptual model in which selection from contrasting environments regulates taxon abundance and ecosystem function through time, with increases in function when oscillating selection opposes stable selective pressures. Our model is applicable within both macrobial and microbial ecology and presents an avenue for assimilating community assembly processes into predictions of ecosystem function.

  9. Rapid Bioassessment Methods for Assessing Stream Macroinvertebrate Community on the Savannah River Site

    International Nuclear Information System (INIS)

    Specht, W.L.

    1999-01-01

    Macroinvertebrate sampling was performed at 16 locations in the Savannah River Site (SRS) streams using Hester-Dendy multiplate samplers and EPA Rapid Bioassessment Protocols (RBP). Some of the sampling locations were unimpacted, while other locations had been subject to various forms of perturbation by SRS activities. In general, the data from the Hester-Dendy multiplate samplers were more sensitive at detecting impacts than were the RBP data. We developed a Biotic Index for the Hester-Dendy data which incorporated eight community structure, function, and balance parameters. when tested using a data set that was unrelated to the data set that was used in developing the Biotic Index, the index was very successful at detecting impact

  10. Rapid Bioassessment Methods for Assessing Stream Macroinvertebrate Community on the Savannah River Site

    Energy Technology Data Exchange (ETDEWEB)

    Specht, W.L.

    1999-11-22

    Macroinvertebrate sampling was performed at 16 locations in the Savannah River Site (SRS) streams using Hester-Dendy multiplate samplers and EPA Rapid Bioassessment Protocols (RBP). Some of the sampling locations were unimpacted, while other locations had been subject to various forms of perturbation by SRS activities. In general, the data from the Hester-Dendy multiplate samplers were more sensitive at detecting impacts than were the RBP data. We developed a Biotic Index for the Hester-Dendy data which incorporated eight community structure, function, and balance parameters. when tested using a data set that was unrelated to the data set that was used in developing the Biotic Index, the index was very successful at detecting impact.

  11. Detrital processing in streams exposed to acidic precipitation in the Central Appalachian Mountains

    International Nuclear Information System (INIS)

    Meegan, S.K.; Perry, S.A.; Perry, W.B.

    1996-01-01

    Continuing high rates of acidic deposition in the eastern United States may lead to long-term effects on stream communities, because sensitive catchments are continuing to lose anions and cations. A two-year study of the effects of pH and associated water chemistry variables on detrital processing in three streams with different bedrock geology in the Monongahela National Forest, West Virginia were investigated. Leaf pack processing rates and macroinvertebrate colonization and microbial biomass (ATP concentration) on the packs in the three stream were compared. It was found that macroinvertebrate and microbial communities differed both among streams that differed in their capacity to buffer the effects of acidic precipitation and among years in the same stream; these differences in biotic communities were not large enough to affect rates of leaf processing between the two years of the study, but they did significantly affect processing rates between acidic and circumneutral streams

  12. Successional colonization of temporary streams: An experimental approach using aquatic insects

    Science.gov (United States)

    Godoy, Bruno Spacek; Queiroz, Luciano Lopes; Lodi, Sara; Nascimento de Jesus, Jhonathan Diego; Oliveira, Leandro Gonçalves

    2016-11-01

    The metacommunity concept studies the processes that structure communities on local and regional scales. This concept is useful to assess spatial variability. However, temporal patterns (e.g., ecological succession and colonization) are neglected in metacommunity studies, since such patterns require temporally extensive, and hard to execute studies. We used experimental habitats in temporary streams located within the Brazilian Cerrado to evaluate the importance of succession for the aquatic insect metacommunity. Five artificial habitats consisting of wrapped crushed rock were set transversally to the water flow in five streams. The habitats were sampled weekly to assess community composition, and replaced after sampling to identify new potential colonizers. We analyzed the accumulation of new colonizers after each week using a logistic model. We selected pairs of experimental habitats and estimated the Bray-Curtis dissimilarity index to assess the community composition trajectory during the experiment. We used the dissimilarity values in ANOVA tests, identifying the importance of time and space for the community. The number of new taxa stabilized in the third week, and we estimated a weekly increase of 1.61 new taxa in the community after stabilization. The overall pattern was a small change on community composition, but one stream had a higher weekly turnover. Our results showed a relevant influence of time in the initial communities of aquatic insects of temporary streams. However, we must observe the temporal pattern in a spatial context, once different streams have different successional history regarding number of taxa and community turnover. We highlight the importance of aerial dispersal and movement to seek oviposition sites as an important factor in determining colonization patterns.

  13. Isonychia spp. and macroinvertebrate community responses to stressors in streams utilizing the benthic in situ toxicity identification evaluation (BiTIE) method

    Energy Technology Data Exchange (ETDEWEB)

    Custer, Kevin W. [Department of Earth and Environmental Sciences, Wright State University, 127 Allyn Hall, 3640 Colonel Glenn Highway, Dayton, OH 45435 (United States)], E-mail: custer.4@wright.edu; Burton, G. Allen [Department of Earth and Environmental Sciences, Wright State University, 127 Allyn Hall, 3640 Colonel Glenn Highway, Dayton, OH 45435 (United States)

    2008-01-15

    Exposures of caged organisms in situ have proven to be a useful way to improve exposure realism and link to stressor effects in aquatic assessments of hazard or risk. A novel cage system, the benthic in situ toxicity identification evaluation (BiTIE), was developed for benthic macroinvertebrates (surrogate species, resident populations and communities) to separate low and high flow effects, and major chemical classes of stressors in streams. Three resin types were used to separate the chemical stressors in the streams Honey Creek and Little Beavercreek, Ohio, USA: Dowex{sup TM} Optipore{sup TM} (non-polar organics), zeolite (ammonia), and polywool (control). Isonychia spp. sensitivity was compared to Chironomus tentans, and no significant differences were found (p > 0.05). Isonychia spp. growth (length) showed a stressor response in the zeolite treatments, and community testing revealed improved metric responses in the Dowex{sup TM} treatments. The BiTIE chamber system demonstrated stressor-response relationships using sublethal and multimetric endpoints. - Use of an indigenous aquatic insect and benthic macroinvertebrate communities allows for discerning the stressors in low and high flows with an in situ TIE approach.

  14. The Northeast Stream Quality Assessment

    Science.gov (United States)

    Van Metre, Peter C.; Riva-Murray, Karen; Coles, James F.

    2016-04-22

    In 2016, the U.S. Geological Survey (USGS) National Water-Quality Assessment (NAWQA) is assessing stream quality in the northeastern United States. The goal of the Northeast Stream Quality Assessment (NESQA) is to assess the quality of streams in the region by characterizing multiple water-quality factors that are stressors to aquatic life and evaluating the relation between these stressors and biological communities. The focus of NESQA in 2016 will be on the effects of urbanization and agriculture on stream quality in all or parts of eight states: Connecticut, Massachusetts, New Hampshire, New Jersey, New York, Pennsylvania, Rhode Island, and Vermont.Findings will provide the public and policymakers with information about the most critical factors affecting stream quality, thus providing insights about possible approaches to protect the health of streams in the region. The NESQA study will be the fourth regional study conducted as part of NAWQA and will be of similar design and scope to the first three, in the Midwest in 2013, the Southeast in 2014, and the Pacific Northwest in 2015 (http://txpub.usgs.gov/RSQA/).

  15. Structural and functional responses of benthic invertebrates to imidacloprid in outdoor stream mesocosms

    International Nuclear Information System (INIS)

    Pestana, J.L.T.; Alexander, A.C.; Culp, J.M.; Baird, D.J.; Cessna, A.J.; Soares, A.M.V.M.

    2009-01-01

    Structural and functional responses of a benthic macroinvertebrate assemblage to pulses of the insecticide imidacloprid were assessed in outdoor stream mesocosms. Imidacloprid pulses reduced invertebrate abundance and community diversity in imidacloprid-dosed streams compared to control streams. These results correlated well with effects of imidacloprid on leaf litter decomposition and feeding rates of Pteronarcys comstocki, a stonefly, in artificial streams. Reductions in oxygen consumption of stoneflies exposed to imidacloprid were also observed in laboratory experiments. Our findings suggest that leaf litter degradation and single species responses can be sensitive ecotoxicological endpoints that can be used as early warning indicators and biomonitoring tools for pesticide contamination. The data generated illustrates the value of mesocosm experiments in environmental assessment and how the consideration of functional and structural endpoints of natural communities together with in situ single species bioassays can improve the evaluation and prediction of pesticide effects on stream ecosystems. - Combining organism-level responses with community-level processes for the evaluation and prediction of pesticide effects on stream ecosystems.

  16. Structural and functional responses of benthic invertebrates to imidacloprid in outdoor stream mesocosms

    Energy Technology Data Exchange (ETDEWEB)

    Pestana, J.L.T., E-mail: jpestana@ua.p [CESAM and Departamento de Biologia, Universidade de Aveiro, Campus Universitario de Santiago, 3810-193 Aveiro (Portugal); Environment Canada at Canadian Rivers Institute, Department of Biology, University of New Brunswick, 10 Bailey Drive, Fredericton, NB (Canada); Alexander, A.C., E-mail: alexa.alexander@unb.c [Environment Canada at Canadian Rivers Institute, Department of Biology, University of New Brunswick, 10 Bailey Drive, Fredericton, NB (Canada); Culp, J.M., E-mail: jculp@unb.c [Environment Canada at Canadian Rivers Institute, Department of Biology, University of New Brunswick, 10 Bailey Drive, Fredericton, NB (Canada); Baird, D.J., E-mail: djbaird@unb.c [Environment Canada at Canadian Rivers Institute, Department of Biology, University of New Brunswick, 10 Bailey Drive, Fredericton, NB (Canada); Cessna, A.J., E-mail: asoares@ua.p [Environment Canada, National Hydrology Research Centre, 11 Innovation Boulevard, Saskatoon, SK (Canada); Soares, A.M.V.M., E-mail: asoares@ua.p [CESAM and Departamento de Biologia, Universidade de Aveiro, Campus Universitario de Santiago, 3810-193 Aveiro (Portugal)

    2009-08-15

    Structural and functional responses of a benthic macroinvertebrate assemblage to pulses of the insecticide imidacloprid were assessed in outdoor stream mesocosms. Imidacloprid pulses reduced invertebrate abundance and community diversity in imidacloprid-dosed streams compared to control streams. These results correlated well with effects of imidacloprid on leaf litter decomposition and feeding rates of Pteronarcys comstocki, a stonefly, in artificial streams. Reductions in oxygen consumption of stoneflies exposed to imidacloprid were also observed in laboratory experiments. Our findings suggest that leaf litter degradation and single species responses can be sensitive ecotoxicological endpoints that can be used as early warning indicators and biomonitoring tools for pesticide contamination. The data generated illustrates the value of mesocosm experiments in environmental assessment and how the consideration of functional and structural endpoints of natural communities together with in situ single species bioassays can improve the evaluation and prediction of pesticide effects on stream ecosystems. - Combining organism-level responses with community-level processes for the evaluation and prediction of pesticide effects on stream ecosystems.

  17. Water quality in Pearl Harbor and feeder streams during 1971 - 2001 collected primarily by oceanography students from Leeward Community College (NODC Accession 0000590)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Water quality data were collected in Pearl Harbor and surrounding feeder streams from 30 December 1971 to 24 August 2001. Data were collected by Leeward Community...

  18. Nutrient cycling and ecosystem metabolism in boreal streams of the Central Siberian Plateau

    Science.gov (United States)

    Diemer, L.; McDowell, W. H.; Prokushkin, A. S.

    2013-12-01

    Arctic boreal streams are undergoing considerable change in carbon and nutrient biogeochemistry due to degrading permafrost and increasing fire activity. Recent studies show that fire increases transport of inorganic solutes from the boreal landscape to arctic streams in some regions; couple this with expected greater labile dissolved organic carbon (DOC) from deepening active layers, enhanced biomass production, and increased annual precipitation and boreal streams may experience greater in-stream primary production and respiration in the coming century. Little is known about the spatial and temporal dynamics of inorganic nutrients in relation to C availability in headwater streams of a major Arctic region, the Central Siberian Plateau. Our preliminary data of Central Siberian headwater streams show NO3 and PO4 concentrations near or below detection limits (e.g. nine samples taken in spring from a small stream near the Russian settlement of Tura averaged 10 μg/L NO3-N and 9.7 μg/L PO4-P), and recent studies in Central Siberia suggest that bioavailable organic matter and inorganic nutrients such as NO3 will likely increase with climate warming. We examined the fate of nutrients in Central Siberian streams using Tracer for Spiraling Curve Characterization (TASCC) additions of NO3, NH4, and PO4 along with conservative tracer, NaCl, in spring at high and low discharges in streams underlain by continuous permafrost in Central Siberia. We also sampled two sites in spring every 2 hours overnight for 24 hours to document any diel patterns in DOC and inorganic nutrients. Our results thus far show that NO3 uptake length may be strongly correlated with DOC concentration (a function of fire activity). Preliminary results also show that despite high discharge and cold temperatures (4-8°C) in mid to late spring, there appears to be biological activity stimulating a diel signal for NO3 with maximum concentration corresponding to low light (11 PM). Investigating the primary

  19. Stream pH as an abiotic gradient influencing distributions of trout in Pennsylvania streams

    Science.gov (United States)

    Kocovsky, P.M.; Carline, R.F.

    2005-01-01

    Elevation and stream slope are abiotic gradients that limit upstream distributions of brook trout Salvelinus fontinalis and brown trout Salmo trutta in streams. We sought to determine whether another abiotic gradient, base-flow pH, may also affect distributions of these two species in eastern North America streams. We used historical data from the Pennsylvania Fish and Boat Commission's fisheries management database to explore the effects of reach elevation, slope, and base-flow pH on distributional limits to brook trout and brown trout in Pennsylvania streams in the Appalachian Plateaus and Ridge and Valley physiographic provinces. Discriminant function analysis (DFA) was used to calculate a canonical axis that separated allopatric brook trout populations from allopatric brown trout populations and allowed us to assess which of the three independent variables were important gradients along which communities graded from allopatric brook trout to allopatric brown trout. Canonical structure coefficients from DFA indicated that in both physiographic provinces, stream base-flow pH and slope were important factors in distributional limits; elevation was also an important factor in the Ridge and Valley Province but not the Appalachian Plateaus Province. Graphs of each variable against the proportion of brook trout in a community also identified apparent zones of allopatry for both species on the basis of pH and stream slope. We hypothesize that pH-mediated interspecific competition that favors brook trout in competition with brown trout at lower pH is the most plausible mechanism for segregation of these two species along pH gradients. Our discovery that trout distributions in Pennsylvania are related to stream base-flow pH has important implications for brook trout conservation in acidified regions. Carefully designed laboratory and field studies will be required to test our hypothesis and elucidate the mechanisms responsible for the partitioning of brook trout and

  20. New methods for modeling stream temperature using high resolution LiDAR, solar radiation analysis and flow accumulated values to predict stream temperature

    Science.gov (United States)

    In-stream temperature directly effects a variety of biotic organisms, communities and processes. Changes in stream temperature can render formally suitable habitat unsuitable for aquatic organisms, particularly native cold water species that are not able to adjust. In order to...

  1. Dissociated repetition deficits in aphasia can reflect flexible interactions between left dorsal and ventral streams and gender-dimorphic architecture of the right dorsal stream.

    Science.gov (United States)

    Berthier, Marcelo L; Froudist Walsh, Seán; Dávila, Guadalupe; Nabrozidis, Alejandro; Juárez Y Ruiz de Mier, Rocío; Gutiérrez, Antonio; De-Torres, Irene; Ruiz-Cruces, Rafael; Alfaro, Francisco; García-Casares, Natalia

    2013-01-01

    Assessment of brain-damaged subjects presenting with dissociated repetition deficits after selective injury to either the left dorsal or ventral auditory pathways can provide further insight on their respective roles in verbal repetition. We evaluated repetition performance and its neural correlates using multimodal imaging (anatomical MRI, DTI, fMRI, and(18)FDG-PET) in a female patient with transcortical motor aphasia (TCMA) and in a male patient with conduction aphasia (CA) who had small contiguous but non-overlapping left perisylvian infarctions. Repetition in the TCMA patient was fully preserved except for a mild impairment in nonwords and digits, whereas the CA patient had impaired repetition of nonwords, digits and word triplet lists. Sentence repetition was impaired, but he repeated novel sentences significantly better than clichés. The TCMA patient had tissue damage and reduced metabolism in the left sensorimotor cortex and insula. DTI showed damage to the left temporo-frontal and parieto-frontal segments of the arcuate fasciculus (AF) and part of the left ventral stream together with well-developed right dorsal and ventral streams, as has been reported in more than one-third of females. The CA patient had tissue damage and reduced metabolic activity in the left temporoparietal cortex with additional metabolic decrements in the left frontal lobe. DTI showed damage to the left temporo-parietal and temporo-frontal segments of the AF, but the ventral stream was spared. The direct segment of the AF in the right hemisphere was also absent with only vestigial remains of the other dorsal subcomponents present, as is often found in males. fMRI during word and nonword repetition revealed bilateral perisylvian activation in the TCMA patient suggesting recruitment of spared segments of the left dorsal stream and right dorsal stream with propagation of signals to temporal lobe structures suggesting a compensatory reallocation of resources via the ventral streams. The

  2. Effects of an Experimental Enrichment of Instream Habitat Heterogeneity on the Stream Bed Morphology and Chironomid Community of a Straightened Section in a Sandy Lowland Stream

    Science.gov (United States)

    Spänhoff, Bernd; Riss, Wolfgang; Jäkel, Paul; Dakkak, Nadja; Meyer, Elisabeth I.

    2006-02-01

    A straightened stream stretch with poor habitat heterogeneity was divided into a “control” section with a low amount of submerged woody debris and an experimentally “wood-enriched” downstream section to study the effect of enhanced habitat diversity on the benthic invertebrate community. The downstream section was enriched by fixing 25 wood packages constructed from 9-10 branches on the stream bottom. Succession processes occurring in the two stream sections were compared by chironomid exuviae drift from July to November 2000 and from April to August 2001. During the first sampling period, more drifting chironomid exuviae (medians of control vs. wood-enriched: 446 vs. 331, no significant difference) and total number of taxa (44 vs. 36, Wilcoxon signed-rank test P = 0.019) were recorded for the control section. Although species compositions of both stream sections were highly similar (Sørensen index: 0.83) the diversity in the wood-enriched section was distinctly lower compared to the control section (Shannon-Weaver index: 1.19 vs. 1.50). During the second sampling period, exuviae numbers remained higher in the control section (median: 326 vs. 166), but total numbers of taxa were nearly equal (51 vs. 49), as well as species diversity (Shannon-Weaver index: 1.67 vs. 1.64). The lower chironomid diversity observed during the first sampling period coincided with a gradual but significant change of the streambed morphology in the wood-enriched section. There, the initially more U-shaped profile (V/U = 0.81 ± 0.37) had turned into a pronounced V shape (V/U = 1.14 ± 0.21), whereas the control section retained its unaltered U shape (V/U = 0.62-0.75). This small-scale study on experimental of woody debris in sandy lowland streams showed that the negative impact of increased hydraulic disturbance of the existing streambed more than outweighed any positive impact resulting from the increase in woody debris.

  3. Is the Stream Always Bluer on the Other Side?

    Science.gov (United States)

    Jenkins, T.; Chase, Z.

    2017-12-01

    Examining water quality, fish species present, habitat quality, and sources of pollution are important to better understanding the health of a stream. In Florida, the Fish and Wildlife Conservation Commission (FWC) works to monitor the health of its streams, and partnerships with . By collecting, analyzing, and comparing fish abundance data from a couple of streams in Escambia County, Florida, we can help FWC determine how to best support and protect stream habitats and fish-species in our Florida community.

  4. Mechanistic links between gut microbial community dynamics, microbial functions and metabolic health

    Science.gov (United States)

    Ha, Connie WY; Lam, Yan Y; Holmes, Andrew J

    2014-01-01

    Gut microbes comprise a high density, biologically active community that lies at the interface of an animal with its nutritional environment. Consequently their activity profoundly influences many aspects of the physiology and metabolism of the host animal. A range of microbial structural components and metabolites directly interact with host intestinal cells and tissues to influence nutrient uptake and epithelial health. Endocrine, neuronal and lymphoid cells in the gut also integrate signals from these microbial factors to influence systemic responses. Dysregulation of these host-microbe interactions is now recognised as a major risk factor in the development of metabolic dysfunction. This is a two-way process and understanding the factors that tip host-microbiome homeostasis over to dysbiosis requires greater appreciation of the host feedbacks that contribute to regulation of microbial community composition. To date, numerous studies have employed taxonomic profiling approaches to explore the links between microbial composition and host outcomes (especially obesity and its comorbidities), but inconsistent host-microbe associations have been reported. Available data indicates multiple factors have contributed to discrepancies between studies. These include the high level of functional redundancy in host-microbiome interactions combined with individual variation in microbiome composition; differences in study design, diet composition and host system between studies; and inherent limitations to the resolution of rRNA-based community profiling. Accounting for these factors allows for recognition of the common microbial and host factors driving community composition and development of dysbiosis on high fat diets. New therapeutic intervention options are now emerging. PMID:25469018

  5. Biofilm scrubbing for restoration—algae community composition and succession in artificial streams

    Directory of Open Access Journals (Sweden)

    Magdalena Mayr

    2016-09-01

    Full Text Available Photoautotrophic biofilms play a pivotal role in self-purification of rivers. We took advantage of the biofilm’s cleaning capacity by applying artificial stream mesocosms, called algae turf scrubberTM (ATS, to reduce the nutrient load of a highly eutrophicated backwater in Vienna (Austria. Since purification strongly depends on benthic algae on the ATS, we focused on the algae community composition and succession. Estimation of coverage, photographic documentation for micromapping, species identification and pigment analyses were carried out. Already one week after exposition, 20–30 different taxa were recorded, suggesting a rapid colonization of the substrate. In total around 200 taxa were identified, mainly belonging to Chlorophyta, Bacillariophyceae and Cyanoprokaryota. Nonmetric multidimensional scaling implied that season and succession strongly influenced species composition on the ATS and a minimum turnover of 0.28 indicates a development towards a more stable community at the end of experiments. We measured maximum biomass production of ~250 g m−2 in June and August and during a period of 5 months nearly 19 kg ha−1 phosphorus could be removed. ATS systems proved to retain nutrients and produce algae biomass in an environmentally friendly and cost effective way and thus support restoration of highly eutrophicated water bodies.

  6. Ecological Study of Periphytic Algal Community of Doodh Ganga and Khansha-Mansha Streams of Yusmarg Forests: A Health Resort of Kashmir Valley, India

    Directory of Open Access Journals (Sweden)

    Rafia Rashid

    2013-06-01

    Full Text Available The present study on Doodh Ganga and Khansha-Mansha streams of Yusmarg forests deals with the general ecological studies on periphytic algal community in terms of species composition and density. During the present investigation the periphytic algal community of Doodh Ganga and Khansha-Mansha streams were represented by 30 taxa which belonged to 4 major classes namely Bacillariophyceae (14, Chlorophyceae (11, Cyanophyceae (4 and Euglenophyceae (1. The most common periphytic species encountered across all the sites included Closterium sp., Zygnema sp., Amphora sp., Cymbella sp., Epithemia sp., Fragilaria sp., Navicula sp., Synedra sp., Tabellaria sp., Lyngbya sp. and Phormidium sp. Among the two streams, Doodh Ganga showed large number of taxa (45 and Khansha-Mansha was having 37 taxa of periphyton. Bacillariophyceae was the dominant group both in diversity and density and included 14 taxa contributing 57% of total periphytic algal population. Cyanophyceae forming the second dominant class was represented by 4 genera comprising 22% of the total periphytic algae .Chlorophyceae ranked third in its dominance pattern with 11 genera forming 20% of all the periphytic algae. Euglenophyceae was represented by only one species of Euglena sp. forming 1% of all the periphytic algae and found only at site 2 (Doodh Ganga downstream.Amongst the study sites the highest (5.69 value of Shannon Weiner Index was found at Doodh Ganga upstream while as lowest (4.38 at Khansha-Mansha downstream. The primary conclusion is that the streams, having crystal clear water, and are free from pollution as Chlorophyceae are better represented in both the streams. Further, as a result of less anthropogenic pressures the quality of water is fairly good.

  7. Effects of land use, stream habitat, and water quality on biological communities of wadeable streams in the Illinois River Basin of Arkansas, 2011 and 2012

    Science.gov (United States)

    Petersen, James C.; Justus, B.G.; Meredith, Bradley J.

    2014-01-01

    The Illinois River Basin includes an area of diverse land use in northwestern Arkansas. Land-use data collected in 2006 indicate that most of the land in the basin is agricultural. The agricultural land is used primarily for production of poultry and cattle. Eighteen sites were selected from the list of candidate sites based on drainage area, land use, presence or absence of an upstream wastewater-treatment plant, water quality, and other information gathered during the reconnaissance. An important consideration in the process was to select sites along gradients of forest to urban land use and forest to agricultural land use. Water-quality samples were collected for analysis of nutrients, and a multiparameter field meter was used to measure water temperature, specific conductance, pH, and dissolved oxygen. Streamflow was measured immediately following the water-quality sampling. Macroalgae coverage was estimated and periphyton, macroinvertebrate, and fish communities were sampled at each site. Stream habitat also was assessed. Many types of land-use, water-quality, and habitat factors affected one or more aspects of the biological communities. Several macroinvertebrate and fish metrics changed in response to changes in percent forest; sites that would be considered most disturbed, based on these metrics, are sites with the highest percentages of urban land use in their associated basins. The presence of large mats of macroalgae was one of the most noticeable biological characteristics in several streams within the Illinois River Basin. The highest macroalgae percent cover values were recorded at four sites downstream from wastewater-treatment plants. Macroalgae percent cover was strongly correlated only with bed substrate size, canopy closure, and specific conductance. Periphyton metrics were most often and most strongly correlated with riparian shading, specific conductance, substrate turbidity, percent agriculture, poultry house density, and unpaved road density

  8. Alignment data streams for the ATLAS inner detector

    CERN Document Server

    Pinto, B; Pereira, P; Elsing, M; Hawkings, R; Schieck, J; García, S; Schaffer, A; Ma, H; Anjos, A

    2008-01-01

    The ATLAS experiment uses a complex trigger strategy to be able to reduce the Event Filter rate output, down to a level that allows the storage and processing of these data. These concepts are described in the ATLAS Computing Model which embraces Grid paradigm. The output coming from the Event Filter consists of four main streams: physical stream, express stream, calibration stream, and diagnostic stream. The calibration stream will be transferred to the Tier-0 facilities that will provide the prompt reconstruction of this stream with a minimum latency of 8 hours, producing calibration constants of sufficient quality to allow a first-pass processing. The Inner Detector community is developing and testing an independent common calibration stream selected at the Event Filter after track reconstruction. It is composed of raw data, in byte-stream format, contained in Readout Buffers (ROBs) with hit information of the selected tracks, and it will be used to derive and update a set of calibration and alignment cons...

  9. Re-meandering of lowland streams: will disobeying the laws of geomorphology have ecological consequences?

    Science.gov (United States)

    Pedersen, Morten Lauge; Kristensen, Klaus Kevin; Friberg, Nikolai

    2014-01-01

    We evaluated the restoration of physical habitats and its influence on macroinvertebrate community structure in 18 Danish lowland streams comprising six restored streams, six streams with little physical alteration and six channelized streams. We hypothesized that physical habitats and macroinvertebrate communities of restored streams would resemble those of natural streams, while those of the channelized streams would differ from both restored and near-natural streams. Physical habitats were surveyed for substrate composition, depth, width and current velocity. Macroinvertebrates were sampled along 100 m reaches in each stream, in edge habitats and in riffle/run habitats located in the center of the stream. Restoration significantly altered the physical conditions and affected the interactions between stream habitat heterogeneity and macroinvertebrate diversity. The substrate in the restored streams was dominated by pebble, whereas the substrate in the channelized and natural streams was dominated by sand. In the natural streams a relationship was identified between slope and pebble/gravel coverage, indicating a coupling of energy and substrate characteristics. Such a relationship did not occur in the channelized or in the restored streams where placement of large amounts of pebble/gravel distorted the natural relationship. The analyses revealed, a direct link between substrate heterogeneity and macroinvertebrate diversity in the natural streams. A similar relationship was not found in either the channelized or the restored streams, which we attribute to a de-coupling of the natural relationship between benthic community diversity and physical habitat diversity. Our study results suggest that restoration schemes should aim at restoring the natural physical structural complexity in the streams and at the same time enhance the possibility of re-generating the natural geomorphological processes sustaining the habitats in streams and rivers. Documentation of

  10. Antilipolytic drug boosts glucose metabolism in prostate cancer

    DEFF Research Database (Denmark)

    Andersen, Kim Francis; Divilov, Vadim; Koziorowski, Jacek

    2013-01-01

    The antilipolytic drug Acipimox reduces free fatty acid (FFA) levels in the blood stream. We examined the effect of reduced FFAs on glucose metabolism in androgen-dependent (CWR22Rv1) and androgen-independent (PC3) prostate cancer (PCa) xenografts.......The antilipolytic drug Acipimox reduces free fatty acid (FFA) levels in the blood stream. We examined the effect of reduced FFAs on glucose metabolism in androgen-dependent (CWR22Rv1) and androgen-independent (PC3) prostate cancer (PCa) xenografts....

  11. Biochemical characterization of a new nicotinamidase from an unclassified bacterium thriving in a geothermal water stream microbial mat community

    OpenAIRE

    Zapata-P?rez, Rub?n; Mart?nez-Mo?ino, Ana-Bel?n; Garc?a-Saura, Antonio-Gin?s; Cabanes, Juana; Takami, Hideto; S?nchez-Ferrer, ?lvaro

    2017-01-01

    Nicotinamidases are amidohydrolases that convert nicotinamide into nicotinic acid, contributing to NAD+ homeostasis in most organisms. In order to increase the number of nicotinamidases described to date, this manuscript characterizes a nicotinamidase obtained from a metagenomic library fosmid clone (JFF054_F02) obtained from a geothermal water stream microbial mat community in a Japanese epithermal mine. The enzyme showed an optimum temperature of 90?C, making it the first hyperthermophilic ...

  12. Field and laboratory investigations on the effects of road salt (NaCl) on stream macroinvertebrate communities

    International Nuclear Information System (INIS)

    Blasius, B.J.; Merritt, R.W.

    2002-01-01

    Short-term exposure to road salt did not significantly affect stream macro-invertebrate communities. - Field and laboratory experiments were conducted to examine the effects of road salt (NaCl) on stream macroinvertebrates. Field studies investigated leaf litter processing rates and functional feeding group composition at locations upstream and downstream from point source salt inputs in two Michigan, USA streams. Laboratory studies determined the effects of increasing NaCl concentrations on aquatic invertebrate drift, behavior, and survival. Field studies revealed that leaves were processed faster at upstream reference sites than at locations downstream from road salt point source inputs. However, it was sediment loading that resulted in partial or complete burial of leaf packs, that affected invertebrate activity and confounded normal leaf pack colonization. There were no significant differences that could be attributed to road salt between upstream and downstream locations in the diversity and composition of invertebrate functional feeding groups. Laboratory drift and acute exposure studies demonstrated that drift of Gammarus (Amphipoda) may be affected by NaCl at concentrations greater than 5000 mg/l for a 24-h period. This amphipod and two species of limnephilid caddisflies exhibited a dose response to salt treatments with 96-h LC 50 values of 7700 and 3526 mg NaCl/l, respectively. Most other invertebrate species and individuals were unaffected by NaCl concentrations up to 10,000 mg/l for 24 and 96 h, respectively

  13. The 24-month metabolic benefits of the healthy living partnerships to prevent diabetes: A community-based translational study.

    Science.gov (United States)

    Pedley, Carolyn F; Case, L Douglas; Blackwell, Caroline S; Katula, Jeffrey A; Vitolins, Mara Z

    2018-05-01

    Large-scale clinical trials and translational studies have demonstrated that weight loss achieved through diet and physical activity reduced the development of diabetes in overweight individuals with prediabetes. These interventions also reduced the occurrence of metabolic syndrome and risk factors linked to other chronic conditions including obesity-driven cancers and cardiovascular disease. The Healthy Living Partnerships to Prevent Diabetes (HELP PD) was a clinical trial in which participants were randomized to receive a community-based lifestyle intervention translated from the Diabetes Prevention Program (DPP) or an enhanced usual care condition. The objective of this study is to compare the 12 and 24 month prevalence of metabolic syndrome in the two treatment arms of HELP PD. The intervention involved a group-based, behavioral weight-loss program led by community health workers monitored by personnel from a local diabetes education program. The enhanced usual care condition included dietary counseling and written materials. HELP PD included 301 overweight or obese participants (BMI 25-39.9kg/m 2 ) with elevated fasting glucose levels (95-125mg/dl). At 12 and 24 months of follow-up there were significant improvements in individual components of the metabolic syndrome: fasting blood glucose, waist circumference, HDL, triglycerides and blood pressure and the occurrence of the metabolic syndrome in the intervention group compared to the usual care group. This study demonstrates that a community diabetes prevention program in participants with prediabetes results in metabolic benefits and a reduction in the occurrence of the metabolic syndrome in the intervention group compared to the enhanced usual care group. Copyright © 2017 Diabetes India. Published by Elsevier Ltd. All rights reserved.

  14. The Metabolic Syndrome and Risk of Sudden Cardiac Death: The Atherosclerosis Risk in Communities Study.

    Science.gov (United States)

    Hess, Paul L; Al-Khalidi, Hussein R; Friedman, Daniel J; Mulder, Hillary; Kucharska-Newton, Anna; Rosamond, Wayne R; Lopes, Renato D; Gersh, Bernard J; Mark, Daniel B; Curtis, Lesley H; Post, Wendy S; Prineas, Ronald J; Sotoodehnia, Nona; Al-Khatib, Sana M

    2017-08-23

    Prior studies have demonstrated a link between the metabolic syndrome and increased risk of cardiovascular mortality. Whether the metabolic syndrome is associated with sudden cardiac death is uncertain. We characterized the relationship between sudden cardiac death and metabolic syndrome status among participants of the ARIC (Atherosclerosis Risk in Communities) Study (1987-2012) free of prevalent coronary heart disease or heart failure. Among 13 168 participants, 357 (2.7%) sudden cardiac deaths occurred during a median follow-up of 23.6 years. Participants with the metabolic syndrome (n=4444) had a higher cumulative incidence of sudden cardiac death than those without it (n=8724) (4.1% versus 2.3%, P metabolic syndrome, the metabolic syndrome was independently associated with sudden cardiac death (hazard ratio, 1.70, 95% confidence interval, 1.37-2.12, P metabolic syndrome criteria components. The risk of sudden cardiac death varied according to the number of metabolic syndrome components (hazard ratio 1.31 per additional component of the metabolic syndrome, 95% confidence interval, 1.19-1.44, P metabolic syndrome was associated with a significantly increased risk of sudden cardiac death irrespective of sex or race. The risk of sudden cardiac death was proportional to the number of metabolic syndrome components. © 2017 The Authors. Published on behalf of the American Heart Association, Inc., by Wiley.

  15. Academic streaming in Europe

    DEFF Research Database (Denmark)

    Falaschi, Alessandro; Mønster, Dan; Doležal, Ivan

    2004-01-01

    The TF-NETCAST task force was active from March 2003 to March 2004, and during this time the mem- bers worked on various aspects of streaming media related to the ultimate goal of setting up common services and infrastructures to enable netcasting of high quality content to the academic community...

  16. Human impacts to mountain streams

    Science.gov (United States)

    Wohl, Ellen

    2006-09-01

    Mountain streams are here defined as channel networks within mountainous regions of the world. This definition encompasses tremendous diversity of physical and biological conditions, as well as history of land use. Human effects on mountain streams may result from activities undertaken within the stream channel that directly alter channel geometry, the dynamics of water and sediment movement, contaminants in the stream, or aquatic and riparian communities. Examples include channelization, construction of grade-control structures or check dams, removal of beavers, and placer mining. Human effects can also result from activities within the watershed that indirectly affect streams by altering the movement of water, sediment, and contaminants into the channel. Deforestation, cropping, grazing, land drainage, and urbanization are among the land uses that indirectly alter stream processes. An overview of the relative intensity of human impacts to mountain streams is provided by a table summarizing human effects on each of the major mountainous regions with respect to five categories: flow regulation, biotic integrity, water pollution, channel alteration, and land use. This table indicates that very few mountains have streams not at least moderately affected by land use. The least affected mountainous regions are those at very high or very low latitudes, although our scientific ignorance of conditions in low-latitude mountains in particular means that streams in these mountains might be more altered than is widely recognized. Four case studies from northern Sweden (arctic region), Colorado Front Range (semiarid temperate region), Swiss Alps (humid temperate region), and Papua New Guinea (humid tropics) are also used to explore in detail the history and effects on rivers of human activities in mountainous regions. The overview and case studies indicate that mountain streams must be managed with particular attention to upstream/downstream connections, hillslope

  17. Periphytic algal community in artificial and natural substratum in a tributary of the Rosana reservoir (Corvo Stream, Paraná State, Brazil - doi: 10.4025/actascibiolsci.v32i4.4627 Periphytic algal community in artificial and natural substratum in a tributary of the Rosana reservoir (Corvo Stream, Paraná State, Brazil - doi: 10.4025/actascibiolsci.v32i4.4627

    Directory of Open Access Journals (Sweden)

    Liliana Rodrigues

    2010-11-01

    Full Text Available Periphytic algal community in artificial and natural substratum in a tributary of the Rosana reservoir (Corvo Stream, Paraná State, Brazil. This study evaluated the heterogeneity in periphytic algal community, under the influence of time colonization on artificial substratum. We also examined which abiotic variables most influenced the community in natural and artificial substratum. Egeria najas Planchon was used as natural substratum, and a plastic plant, as artificial. This experiment was carried out in a lateral arm from Rosana Reservoir, formed by Corvo Stream (Paranapanema river basin, in the period from November 21st to December 12nd, 2003, characterized as a warm and rainy period. Changes in species composition were assessed using the similarity indices. 495 taxa were registered in the phycoperiphytic community, distributed in 133 genera and 11 classes. Zygnemaphyceae, Bacillariophyceae, Chlorophyceae and Cyanophyceae presented higher species number, in both substrata. Staurodesmus, Closterium, Staurastrum and Cosmarium (Desmidiales; Gomphonema and Eunotia (Pennales; Characium, Scenedesmus and Desmodesmus (Chlorococcales; Anabaena and Aphanocapsa (Nostocales and Chroococcales, respectively were the most species-rich genera. The epiphytic community reached the highest species richness in the 15th successional day. Regardless the substratum type, the number of species was probably related to the high concentrations of nutrients (phosphorus and nitrogen.Periphytic algal community in artificial and natural substratum in a tributary of the Rosana reservoir (Corvo Stream, Paraná State, Brazil. This study evaluated the heterogeneity in periphytic algal community, under the influence of time colonization on artificial substratum. We also examined which abiotic variables most influenced the community in natural and artificial substratum. Egeria najas Planchon was used as natural substratum, and a plastic plant, as artificial. This experiment was

  18. Stream Tracker: Crowd sourcing and remote sensing to monitor stream flow intermittence

    Science.gov (United States)

    Puntenney, K.; Kampf, S. K.; Newman, G.; Lefsky, M. A.; Weber, R.; Gerlich, J.

    2017-12-01

    Streams that do not flow continuously in time and space support diverse aquatic life and can be critical contributors to downstream water supply. However, these intermittent streams are rarely monitored and poorly mapped. Stream Tracker is a community powered stream monitoring project that pairs citizen contributed observations of streamflow presence or absence with a network of streamflow sensors and remotely sensed data from satellites to track when and where water is flowing in intermittent stream channels. Citizens can visit sites on roads and trails to track flow and contribute their observations to the project site hosted by CitSci.org. Data can be entered using either a mobile application with offline capabilities or an online data entry portal. The sensor network provides a consistent record of streamflow and flow presence/absence across a range of elevations and drainage areas. Capacitance, resistance, and laser sensors have been deployed to determine the most reliable, low cost sensor that could be mass distributed to track streamflow intermittence over a larger number of sites. Streamflow presence or absence observations from the citizen and sensor networks are then compared to satellite imagery to improve flow detection algorithms using remotely sensed data from Landsat. In the first two months of this project, 1,287 observations have been made at 241 sites by 24 project members across northern and western Colorado.

  19. Metagenomic analysis of an ecological wastewater treatment plant's microbial communities and their potential to metabolize pharmaceuticals.

    Science.gov (United States)

    Balcom, Ian N; Driscoll, Heather; Vincent, James; Leduc, Meagan

    2016-01-01

    Pharmaceuticals and other micropollutants have been detected in drinking water, groundwater, surface water, and soil around the world. Even in locations where wastewater treatment is required, they can be found in drinking water wells, municipal water supplies, and agricultural soils. It is clear conventional wastewater treatment technologies are not meeting the challenge of the mounting pressures on global freshwater supplies. Cost-effective ecological wastewater treatment technologies have been developed in response. To determine whether the removal of micropollutants in ecological wastewater treatment plants (WWTPs) is promoted by the plant-microbe interactions, as has been reported for other recalcitrant xenobiotics, biofilm microbial communities growing on the surfaces of plant roots were profiled by whole metagenome sequencing and compared to the microbial communities residing in the wastewater. In this study, the concentrations of pharmaceuticals and personal care products (PPCPs) were quantified in each treatment tank of the ecological WWTP treating human wastewater at a highway rest stop and visitor center in Vermont. The concentrations of detected PPCPs were substantially greater than values reported for conventional WWTPs likely due to onsite recirculation of wastewater. The greatest reductions in PPCPs concentrations were observed in the anoxic treatment tank where Bacilli dominated the biofilm community. Benzoate degradation was the most abundant xenobiotic metabolic category identified throughout the system. Collectively, the microbial communities residing in the wastewater were taxonomically and metabolically more diverse than the immersed plant root biofilm. However, greater heterogeneity and higher relative abundances of xenobiotic metabolism genes was observed for the root biofilm.

  20. Ecological Realism of U.S. EPA Experimental Stream Facility Studies

    Science.gov (United States)

    The USEPA’s Experimental Stream Facility (ESF) conducts meso-scale ecotoxicology studies that account for both structural and functional responses of whole stream communities to contaminants or other stressors. The 16 mesocosms of ESF are indoors and consist of a tiled run sectio...

  1. Metabolic syndrome in breast cancer survivors with high carbohydrate consumption: The first report in community setting.

    Science.gov (United States)

    Park, Boyoung; Kong, Sun-Young; Lee, Eun Kyung; Lee, Moo Hyun; Lee, Eun Sook

    2017-10-01

    This study was conducted to examine the prevalence of and lifestyle factors associated with the metabolic syndrome in breast cancer survivors and to compare those factors with controls without cancer in a community setting. This study included 584 female breast cancer survivors ≥3 years after the initial diagnosis and 2336 age-matched cancer-free female controls from 39 community health examination centers located in 14 urban areas in Korea. The prevalence of the metabolic syndrome is shown. Factors associated with the metabolic syndrome were analyzed as odds ratios (ORs) in cancer survivors and controls; differences between the two groups in the ORs of associated factors were evaluated by calculating p-heterogeneity values. The prevalence of metabolic syndrome in breast cancer survivors and age-matched controls were 26.8% and 26.9%, respectively. Higher percentage of caloric intake from carbohydrates was associated with increased metabolic syndrome only in the breast cancer survivors (OR for the highest vs. lowest quartile for survivors = 2.48 [95% CI = 1.20-5.14]; OR for controls = 1.11 [95% CI = 0.81-1.51]; P-heterogeneity = 0.046). Sweat-inducing exercise for ≥150 min/week was associated with a lower risk of metabolic syndrome only in controls (controls: OR = 0.72 [95% CI = 0.58-0.89]; survivors: OR = 0.88 [95% CI = 0.57-1.36]). Older age, higher body mass index, and a lower education level (≤12 years) was associated with an increased prevalence of metabolic syndrome in both groups. Our results suggest that, in regions with excess carbohydrate intake, the association of the metabolic syndrome with percentage of caloric intake from carbohydrate might be more prominent than exercise in breast cancer survivors, compared with general population. Copyright © 2016 Elsevier Ltd and European Society for Clinical Nutrition and Metabolism. All rights reserved.

  2. Effect of thiram and of a hydrocarbon mixture on freshwater macroinvertebrate communities in outdoor stream and pond mesocosms: I. Study design, chemicals fate and structural responses.

    Science.gov (United States)

    Bayona, Yannick; Roucaute, Marc; Cailleaud, Kevin; Lagadic, Laurent; Bassères, Anne; Caquet, Thierry

    2015-11-01

    Higher-tier ecological risk assessment (ERA) in mesocosms is commonly performed in lotic or lentic experimental systems. These systems differ in their physico-chemical and hydrological properties, leading to differences in chemical fate, community characteristics and potential recovery. This raises the issue of the relevance and sensitivity of community-level endpoints in different types of mesocosms. In this study, macroinvertebrate abundance and biomass estimates were used to assess the effects of a dithiocarbamate fungicide, thiram (35 and 170 µg l(-1)), and a petroleum middle distillate (PMD; 0.01, 0.4, 2 and 20 mg l(-1)) in outdoor stream and pond mesocosms. Streams were continuously treated during 3 weeks followed by a 2-month long post-treatment period. Ponds were treated weekly for 4 weeks, followed by a 10-month long post-treatment period. Taxonomic structure of macroinvertebrate communities was characterized using the α, β and γ components of taxa richness, Shannon and Gini-Simpson indices. Computations were based either on abundance or biomass data. Results clearly highlighted that the effects of chemicals depended on the exposure regime (for thiram) and type of system (for the PMD). Causes of the differences between streams and ponds in the magnitude and nature of effects include differential sensitivity of taxa dwelling in lentic and lotic systems and the influence of hydrology (e.g., drift from upstream) and mesocosm connectivity on recovery dynamics. This study also showed complementarities in the use of both types of mesocosms to improve the characterization of chemical effects on communities in ERA.

  3. Metatranscriptomic analysis of diverse microbial communities reveals core metabolic pathways and microbiome-specific functionality.

    Science.gov (United States)

    Jiang, Yue; Xiong, Xuejian; Danska, Jayne; Parkinson, John

    2016-01-12

    Metatranscriptomics is emerging as a powerful technology for the functional characterization of complex microbial communities (microbiomes). Use of unbiased RNA-sequencing can reveal both the taxonomic composition and active biochemical functions of a complex microbial community. However, the lack of established reference genomes, computational tools and pipelines make analysis and interpretation of these datasets challenging. Systematic studies that compare data across microbiomes are needed to demonstrate the ability of such pipelines to deliver biologically meaningful insights on microbiome function. Here, we apply a standardized analytical pipeline to perform a comparative analysis of metatranscriptomic data from diverse microbial communities derived from mouse large intestine, cow rumen, kimchi culture, deep-sea thermal vent and permafrost. Sequence similarity searches allowed annotation of 19 to 76% of putative messenger RNA (mRNA) reads, with the highest frequency in the kimchi dataset due to its relatively low complexity and availability of closely related reference genomes. Metatranscriptomic datasets exhibited distinct taxonomic and functional signatures. From a metabolic perspective, we identified a common core of enzymes involved in amino acid, energy and nucleotide metabolism and also identified microbiome-specific pathways such as phosphonate metabolism (deep sea) and glycan degradation pathways (cow rumen). Integrating taxonomic and functional annotations within a novel visualization framework revealed the contribution of different taxa to metabolic pathways, allowing the identification of taxa that contribute unique functions. The application of a single, standard pipeline confirms that the rich taxonomic and functional diversity observed across microbiomes is not simply an artefact of different analysis pipelines but instead reflects distinct environmental influences. At the same time, our findings show how microbiome complexity and availability of

  4. A prospective study of monitoring practices for metabolic disease in antipsychotic-treated community psychiatric patients

    Directory of Open Access Journals (Sweden)

    Watkinson Helen MO

    2007-06-01

    Full Text Available Abstract Background Patients with severe mental illness are at increased risk for metabolic and cardiovascular disease. A number of recent guidelines and consensus statements recommend stringent monitoring of metabolic function in individuals receiving antipsychotic drugs. Methods We conducted a prospective cohort study of 106 community-treated psychiatric patients from across the diagnostic spectrum from the Northeast of England to investigate changes in metabolic status and monitoring practices for metabolic and cardiovascular disease. We undertook detailed anthropometric and metabolic assessment at baseline and follow-up, and examined clinical notes and hospital laboratory records to ascertain monitoring practices. Results A high prevalence of undiagnosed and untreated metabolic disease was present at baseline assessment. Mean follow-up time was 599.3 (SD ± 235.4 days. Body mass index (p 50% of subjects had neither blood glucose nor lipids monitored during the follow-up period. Conclusion This cohort has a high prevalence of metabolic disease and heightened cardiovascular risk. Despite the publication of a number of recommendations regarding physical health screening in this population, monitoring rates are poor, and physical health worsened during the follow-up period.

  5. Effects of agricultural and urban impacts on macroinvertebrates assemblages in streams (Rio Grande do Sul, Brazil

    Directory of Open Access Journals (Sweden)

    Luiz Ubiratan Hepp

    2010-02-01

    Full Text Available This study evaluates the effects of agricultural and urban activities on the structure and composition of benthic communities of streams in the state of Rio Grande do Sul, Brazil. Benthic macroinvertebrates were collected in streams influenced by urbanization and agriculture and in streams with no anthropogenic disturbances (reference streams. Organism density was superior in urban streams when compared with streams in the other two areas. The taxonomic richness and Shannon diversity index were higher in reference streams. The benthic fauna composition was significantly different among land uses. The classification and ordination analyses corroborated the results of variance analyses demonstrating the formation of clusters corresponding to streams with similar land use. Seasonality was also found to influence the benthic community, though in a lesser degree than land use.

  6. Succession of the functional microbial communities and the metabolic functions in maize straw composting process.

    Science.gov (United States)

    Wei, Huawei; Wang, Liuhong; Hassan, Muhammad; Xie, Bing

    2018-05-01

    Illumina MiSeq sequencing and phylogenetic investigation of communities by reconstruction of unobserved states (PICRUSt) were applied to study the dynamic changes and effects of microbial community structures as well as the metabolic function of bacterial community in maize straw composting process. Results showed that humic acid contents in loosely combined humus (HA1) and stably combined humus (HA2) increased after composting and Staphylococcus, Cellulosimicrobium and Ochrobactrum possibly participated in the transformation of the process. The bacterial communities differed in different stages of the composting. Firmicutes, Proteobacteria, Bacteroidetes and Actinobacteria were reported the dominant phyla throughout the process and the relative abundance of the dominant phyla varied significantly (p composting. Copyright © 2018 Elsevier Ltd. All rights reserved.

  7. Indication of pesticide effects and recolonization in streams.

    Science.gov (United States)

    Knillmann, Saskia; Orlinskiy, Polina; Kaske, Oliver; Foit, Kaarina; Liess, Matthias

    2018-07-15

    The agricultural use of pesticides leads to environmentally relevant pesticide concentrations that cause adverse effects on stream ecosystems. These effects on invertebrate community composition can be identified by the bio-indicator SPEAR pesticides . However, refuge areas have been found to partly confound the indicator. On the basis of three monitoring campaigns of 41 sites in Central Germany, we identified 11 refuge taxa. The refuge taxa, mainly characterized by dispersal-based resilience, were observed only nearby uncontaminated stream sections and independent of the level of pesticide pressure. Through incorporation of this information into the revised SPEAR pesticides indicator, the community structure specifically identified the toxic pressure and no longer depended on the presence of refuge areas. With regard to ecosystem functions, leaf litter degradation was predicted by the revised SPEAR pesticides and the median water temperature at a site (R 2  = 0.38, P = 0.003). Furthermore, we designed the bio-indicator SPEAR refuge to quantify the magnitude of general recolonization at a given stream site. We conclude that the taxonomic composition of aquatic invertebrate communities enables a specific indication of anthropogenic stressors and resilience of ecosystems. Copyright © 2018 Elsevier B.V. All rights reserved.

  8. An integrated study to analyze soil microbial community structure and metabolic potential in two forest types.

    Science.gov (United States)

    Zhang, Yuguang; Cong, Jing; Lu, Hui; Yang, Caiyun; Yang, Yunfeng; Zhou, Jizhong; Li, Diqiang

    2014-01-01

    Soil microbial metabolic potential and ecosystem function have received little attention owing to difficulties in methodology. In this study, we selected natural mature forest and natural secondary forest and analyzed the soil microbial community and metabolic potential combing the high-throughput sequencing and GeoChip technologies. Phylogenetic analysis based on 16S rRNA sequencing showed that one known archaeal phylum and 15 known bacterial phyla as well as unclassified phylotypes were presented in these forest soils, and Acidobacteria, Protecobacteria, and Actinobacteria were three of most abundant phyla. The detected microbial functional gene groups were related to different biogeochemical processes, including carbon degradation, carbon fixation, methane metabolism, nitrogen cycling, phosphorus utilization, sulfur cycling, etc. The Shannon index for detected functional gene probes was significantly higher (PThe regression analysis showed that a strong positive (Pthe soil microbial functional gene diversity and phylogenetic diversity. Mantel test showed that soil oxidizable organic carbon, soil total nitrogen and cellulose, glucanase, and amylase activities were significantly linked (Pthe relative abundance of corresponded functional gene groups. Variance partitioning analysis showed that a total of 81.58% of the variation in community structure was explained by soil chemical factors, soil temperature, and plant diversity. Therefore, the positive link of soil microbial structure and composition to functional activity related to ecosystem functioning was existed, and the natural secondary forest soil may occur the high microbial metabolic potential. Although the results can't directly reflect the actual microbial populations and functional activities, this study provides insight into the potential activity of the microbial community and associated feedback responses of the terrestrial ecosystem to environmental changes.

  9. Local geology determines responses of stream producers and fungal decomposers to nutrient enrichment: A field experiment.

    Science.gov (United States)

    Mykrä, Heikki; Sarremejane, Romain; Laamanen, Tiina; Karjalainen, Satu Maaria; Markkola, Annamari; Lehtinen, Sirkku; Lehosmaa, Kaisa; Muotka, Timo

    2018-04-16

    We examined how short-term (19 days) nutrient enrichment influences stream fungal and diatom communities, and rates of leaf decomposition and algal biomass accrual. We conducted a field experiment using slow-releasing nutrient pellets to increase nitrate (NO 3 -N) and phosphate (PO 4 -P) concentrations in a riffle section of six naturally acidic (naturally low pH due to catchment geology) and six circumneutral streams. Nutrient enrichment increased microbial decomposition rate on average by 14%, but the effect was significant only in naturally acidic streams. Nutrient enrichment also decreased richness and increased compositional variability of fungal communities in naturally acidic streams. Algal biomass increased in both stream types, but algal growth was overall very low. Diatom richness increased in response to nutrient addition by, but only in circumneutral streams. Our results suggest that primary producers and decomposers are differentially affected by nutrient enrichment and that their responses to excess nutrients are context dependent, with a potentially stronger response of detrital processes and fungal communities in naturally acidic streams than in less selective environments.

  10. Temperature dependence of plankton community metabolism in the subtropical and tropical oceans

    KAUST Repository

    Garcia-Corral, Lara S.; Holding, Johnna M.; Carrillo-de-Albornoz, Paloma; Steckbauer, Alexandra; Pé rez-Lorenzo, Marí a; Navarro, Nuria; Serret, Pablo; Gasol, Josep M.; Moran, Xose Anxelu G.; Estrada, Marta; Fraile-Nuez, Eugenio; Bení tez-Barrios, Veró nica; Agusti, Susana; Duarte, Carlos M.

    2017-01-01

    Here we assess the temperature dependence of the metabolic rates (gross primary production (GPP), community respiration (CR), and the ratio GPP/CR) of oceanic plankton communities. We compile data from 133 stations of the Malaspina 2010 Expedition, distributed among the subtropical and tropical Atlantic, Pacific, and Indian oceans. We used the in vitro technique to measured metabolic rates during 24 h incubations at three different sampled depths: surface, 20%, and 1% of the photosynthetically active radiation measured at surface. We also measured the % of ultraviolet B radiation (UVB) penetrating at surface waters. GPP and CR rates increased with warming, albeit different responses were observed for each sampled depth. The overall GPP/CR ratio declined with warming. Higher activation energies (E-a) were derived for both processes (GPP(Chla) = 0.97; CRChla = 1.26; CRHPA = 0.95 eV) compared to those previously reported. The Indian Ocean showed the highest E-a (GPP(Chla) = 1.70; CRChla = 1.48; CRHPA = 0.57 eV), while the Atlantic Ocean showed the lowest (GPP(Chla) = 0.86; CRChla = 0.77; CRHPA = -0.13 eV). We believe that the difference between previous assessments and the ones presented here can be explained by the overrepresentation of Atlantic communities in the previous data sets. We found that UVB radiation also affects the temperature dependence of surface GPP, which decreased rather than increased under high levels of UVB. Ocean warming, which causes stratification and oligotrophication of the subtropical and tropical oceans, may lead to reduced surface GPP as a result of increased penetration of UVB radiation.

  11. Temperature dependence of plankton community metabolism in the subtropical and tropical oceans

    KAUST Repository

    Garcia-Corral, Lara S.

    2017-06-22

    Here we assess the temperature dependence of the metabolic rates (gross primary production (GPP), community respiration (CR), and the ratio GPP/CR) of oceanic plankton communities. We compile data from 133 stations of the Malaspina 2010 Expedition, distributed among the subtropical and tropical Atlantic, Pacific, and Indian oceans. We used the in vitro technique to measured metabolic rates during 24 h incubations at three different sampled depths: surface, 20%, and 1% of the photosynthetically active radiation measured at surface. We also measured the % of ultraviolet B radiation (UVB) penetrating at surface waters. GPP and CR rates increased with warming, albeit different responses were observed for each sampled depth. The overall GPP/CR ratio declined with warming. Higher activation energies (E-a) were derived for both processes (GPP(Chla) = 0.97; CRChla = 1.26; CRHPA = 0.95 eV) compared to those previously reported. The Indian Ocean showed the highest E-a (GPP(Chla) = 1.70; CRChla = 1.48; CRHPA = 0.57 eV), while the Atlantic Ocean showed the lowest (GPP(Chla) = 0.86; CRChla = 0.77; CRHPA = -0.13 eV). We believe that the difference between previous assessments and the ones presented here can be explained by the overrepresentation of Atlantic communities in the previous data sets. We found that UVB radiation also affects the temperature dependence of surface GPP, which decreased rather than increased under high levels of UVB. Ocean warming, which causes stratification and oligotrophication of the subtropical and tropical oceans, may lead to reduced surface GPP as a result of increased penetration of UVB radiation.

  12. Effects of Pheretima Guillelmi Cultivation Time on Microbial Community Diversity and Characteristics of Carbon Metabolism in Vegetable Soil

    Directory of Open Access Journals (Sweden)

    ZHENG Xian-qing

    2015-12-01

    Full Text Available In order to study the effect of different biological tillage time (Pheretima guillelmi on soil microbial community metabolic functions in different soil depths, we set a location test in vegetable field at Chongming Island in Shanghai to analyze the changes of soil microbial community and carbon utilization abilities (Average well- color development, AWCD by using biolog eco-plate method. The three-year results showed that: Bio-tillage significantly improved microbial community activity, and with the increase of tillage years, biological tillage could make the average AWCD 3 to 7 times higher. The Simpson index and Shannon index of the biological tillage treatments were significantly higher than that of the control. The cumulative increase of 0~5 cm soil layer was 49 and 6.28 respectively, and the cumulative increase of 5~20 cm soil layer was 31 and 2.55 respectively. Earthworm bio-tillage significantly increased the soil microbial metabolic ability of 6 kinds of carbon sources, and increased the carbohydrate metabolism activity. In this study, earthworm bio-tillage is an effective way to increase the microbial activity of microbial soil.

  13. Comparability of slack water and Lagrangian flow respirometry methods for community metabolic measurements.

    Directory of Open Access Journals (Sweden)

    Emily C Shaw

    Full Text Available Coral reef calcification is predicted to decline as a result of ocean acidification and other anthropogenic stressors. The majority of studies predicting declines based on in situ relationships between environmental parameters and net community calcification rate have been location-specific, preventing accurate predictions for coral reefs globally. In this study, net community calcification and production were measured on a coral reef flat at One Tree Island, Great Barrier Reef, using Lagrangian flow respirometry and slack water methods. Net community calcification, daytime net photosynthesis and nighttime respiration were higher under the flow respirometry method, likely due to increased water flow relative to the slack water method. The two methods also varied in the degrees to which they were influenced by potential measurement uncertainties. The difference in the results from these two commonly used methods implies that some of the location-specific differences in coral reef community metabolism may be due to differences in measurement methods.

  14. The effects of run-of-river hydroelectric power schemes on invertebrate community composition in temperate streams and rivers.

    Science.gov (United States)

    Bilotta, Gary S; Burnside, Niall G; Turley, Matthew D; Gray, Jeremy C; Orr, Harriet G

    2017-01-01

    Run-of-river (ROR) hydroelectric power (HEP) schemes are often presumed to be less ecologically damaging than large-scale storage HEP schemes. However, there is currently limited scientific evidence on their ecological impact. The aim of this article is to investigate the effects of ROR HEP schemes on communities of invertebrates in temperate streams and rivers, using a multi-site Before-After, Control-Impact (BACI) study design. The study makes use of routine environmental surveillance data collected as part of long-term national and international monitoring programmes at 22 systematically-selected ROR HEP schemes and 22 systematically-selected paired control sites. Five widely-used family-level invertebrate metrics (richness, evenness, LIFE, E-PSI, WHPT) were analysed using a linear mixed effects model. The analyses showed that there was a statistically significant effect (p<0.05) of ROR HEP construction and operation on the evenness of the invertebrate community. However, no statistically significant effects were detected on the four other metrics of community composition. The implications of these findings are discussed in this article and recommendations are made for best-practice study design for future invertebrate community impact studies.

  15. Combined effects of local habitat, anthropogenic stress, and dispersal on stream ecosystems: a mesocosm experiment.

    Science.gov (United States)

    Turunen, Jarno; Louhi, Pauliina; Mykrä, Heikki; Aroviita, Jukka; Putkonen, Emmi; Huusko, Ari; Muotka, Timo

    2018-06-06

    The effects of anthropogenic stressors on community structure and ecosystem functioning can be strongly influenced by local habitat structure and dispersal from source communities. Catchment land uses increase the input of fine sediments into stream channels, clogging the interstitial spaces of benthic habitats. Aquatic macrophytes enhance habitat heterogeneity and mediate important ecosystem functions, being thus a key component of habitat structure in many streams. Therefore, the recovery of macrophytes following in-stream habitat modification may be prerequisite for successful stream restoration. Restoration success is also affected by dispersal of organisms from the source community, with potentially strongest responses in relatively isolated headwater sites that receive limited amount of dispersing individuals. We used a factorial design in a set of stream mesocosms to study the independent and combined effects of an anthropogenic stressor (sand sedimentation), local habitat (macrophytes, i.e. moss transplants) and enhanced dispersal (two levels: high vs. low) on organic matter retention, algal accrual rate, leaf decomposition and macroinvertebrate community structure. Overall, all responses were simple additive effects with no interactions between treatments. Sand reduced algal accumulation, total invertebrate density and density of a few individual taxa. Mosses reduced algal accrual rate and algae-grazing invertebrates, but enhanced organic matter retention and detritus- and filter-feeders. Mosses also reduced macroinvertebrate diversity by increasing the dominance by a few taxa. Mosses also reduced leaf-mass loss, possibly because the organic matter retained by mosses provided an additional food source for leaf-shredding invertebrates and thus reduced shredder aggregation into leaf packs. The effect of mosses on macroinvertebrate communities and ecosystem functioning was distinct irrespective of the level of dispersal, suggesting strong environmental

  16. Community-level response of fishes and aquatic macroinvertebrates to stream restoration in a third-order tributary of the Potomac River, USA

    Science.gov (United States)

    Selego, Stephen M.; Rose, Charnee L.; Merovich, George T.; Welsh, Stuart A.; Anderson, James T.

    2012-01-01

    Natural stream channel design principles and riparian restoration practices were applied during spring 2010 to an agriculturally impaired reach of the Cacapon River, a tributary of the Potomac River which flows into the Chesapeake Bay. Aquatic macroinvertebrates and fishes were sampled from the restoration reach, two degraded control, and two natural reference reaches prior to, concurrently with, and following restoration (2009 through 2010). Collector filterers and scrapers replaced collector gatherers as the dominant macroinvertebrate functional feeding groups in the restoration reach. Before restoration, based on indices of biotic integrity (IBI), the restoration reach fish and macroinvertebrate communities closely resembled those sampled from the control reaches, and after restoration more closely resembled those from the reference reaches. Although the macroinvertebrate community responded more favorably than the fish community, both communities recovered quickly from the temporary impairment caused by the disturbance of restoration procedures and suggest rapid improvement in local ecological conditions.

  17. In situ metabolism in halite endolithic microbial communities of the hyperarid Atacama Desert

    Directory of Open Access Journals (Sweden)

    Alfonso F Davila

    2015-10-01

    Full Text Available The Atacama Desert of northern Chile is one of the driest regions on Earth, with areas that exclude plants and where soils have extremely low microbial biomass. However, in the driest parts of the desert there are microorganisms that colonize the interior of halite nodules in fossil continental evaporites, where they are sustained by condensation of atmospheric water triggered by the salt substrate. Using a combination of in situ observations of variable chlorophyll fluorescence and controlled laboratory experiments, we show that this endolithic community is capable of carbon fixation both through oxygenic photosynthesis and potentially ammonia oxidation. We also present evidence that photosynthetic activity is finely tuned to moisture availability and solar insolation and can be sustained for days, and perhaps longer, after a wetting event. This is the first demonstration of in situ active metabolism in the hyperarid core of the Atacama Desert, and it provides the basis for proposing a self-contained, endolithic community that relies exclusively on non-rainfall sources of water. Our results contribute to an increasing body of evidence that even in hyperarid environments active metabolism, adaptation and growth can occur in highly specialized microhabitats.

  18. Physical activity and not sedentary time per se influences on clustered metabolic risk in elderly community-dwelling women.

    Directory of Open Access Journals (Sweden)

    Andreas Nilsson

    Full Text Available Whether amount of time spent in sedentary activities influences on clustered metabolic risk in elderly, and to what extent such an influence is independent of physical activity behavior, remain unclear. Therefore, the aim of the study was to examine cross-sectional associations of objectively assessed physical activity and sedentary behavior on metabolic risk outcomes in a sample of elderly community-dwelling women.Metabolic risk outcomes including waist circumference, systolic and diastolic blood pressures, fasting levels of plasma glucose, HDL-cholesterol and triglycerides were assessed in 120 community-dwelling older women (65-70 yrs. Accelerometers were used to retrieve daily sedentary time, breaks in sedentary time, daily time in light (LPA and moderate-to-vigorous physical activity (MVPA, and total amount of accelerometer counts. Multivariate regression models were used to examine influence of physical activity and sedentary behavior on metabolic risk outcomes including a clustered metabolic risk score.When based on isotemporal substitution modeling, replacement of a 10-min time block of MVPA with a corresponding time block of either LPA or sedentary activities was associated with an increase in clustered metabolic risk score (β = 0.06 to 0.08, p < 0.05, and an increase in waist circumference (β = 1.78 to 2.19 p < 0.01. All associations indicated between sedentary time and metabolic risk outcomes were lost once variation in total accelerometer counts was adjusted for.Detrimental influence of a sedentary lifestyle on metabolic health is likely explained by variations in amounts of physical activity rather than amount of sedentary time per se. Given our findings, increased amounts of physical activity with an emphasis on increased time in MVPA should be recommended in order to promote a favorable metabolic health profile in older women.

  19. Results of Macroinvertebrate Sampling Conducted at 33 SRS Stream Locations, July--August 1993

    Energy Technology Data Exchange (ETDEWEB)

    Specht, W.L.

    1994-12-01

    In order to assess the health of the macroinvertebrate communities of SRS streams, the macroinvertebrate communities at 30 stream locations on SRS were sampled during the summer of 1993, using Hester-Dendy multiplate samplers. In addition, three off-site locations in the Upper Three Runs drainage were sampled in order to assess the potential for impact from off-site activities. In interpreting the data, it is important to recognize that these data were from a single set of collections. Macroinvertebrate communities often undergo considerable temporal variation, and are also greatly influenced by such factors as water depth, water velocity, and available habitat. These stations were selected with the intent of developing an on-going sampling program at a smaller number of stations, with the selection of the stations to be based largely upon the results of this preliminary sampling program. When stations within a given stream showed similar results, fewer stations would be sampled in the future. Similarly, if a stream appeared to be perturbed, additional stations or chemical analyses might be added so that the source of the perturbation could be identified. In general, unperturbed streams will contain more taxa than perturbed streams, and the distribution of taxa among orders or families will differ. Some groups of macroinvertebrates, such as Ephemeroptera (mayflies), Plecoptera (stoneflies) and Trichoptera (caddisflies), which are collectively called EPT taxa, are considered to be relatively sensitive to most kinds of stream perturbation; therefore a reduced number of EPT taxa generally indicates that the stream has been subject to chemical or physical stressors. In coastal plain streams, EPT taxa are generally less dominant than in streams with rocky substrates, while Chironomidae (midges) are more abundant. (Abstract Truncated)

  20. Stream fishes and desirable fish stocks

    DEFF Research Database (Denmark)

    Dieperink, C.; Sand-Jensen, K.

    2006-01-01

    Freshwater fi sh communities have always been valuable resources for society, particularly the species that migrate between freshwater and the sea. Historically, eel, salmon and trout were so abundant that good fi shing luck could turn a capable fi sherman into a wealthy person. Unfortunately......, illustrates this historical decline and also the diffi culty of re-establishing healthy fi sh communities once the original populations have deteriorated or, in the case of salmon, become extinct. Efforts are currently needed to be made to effectively restore and manage fi sh communities in streams....

  1. Physiological community ecology: variation in metabolic activity of ecologically important rocky intertidal invertebrates along environmental gradients.

    Science.gov (United States)

    Dahlhoff, Elizabeth P; Stillman, Jonathon H; Menge, Bruce A

    2002-08-01

    Rocky intertidal invertebrates live in heterogeneous habitats characterized by steep gradients in wave activity, tidal flux, temperature, food quality and food availability. These environmental factors impact metabolic activity via changes in energy input and stress-induced alteration of energetic demands. For keystone species, small environmentally induced shifts in metabolic activity may lead to disproportionately large impacts on community structure via changes in growth or survival of these key species. Here we use biochemical indicators to assess how natural differences in wave exposure, temperature and food availability may affect metabolic activity of mussels, barnacles, whelks and sea stars living at rocky intertidal sites with different physical and oceanographic characteristics. We show that oxygen consumption rate is correlated with the activity of key metabolic enzymes (e.g., citrate synthase and malate dehydrogenase) for some intertidal species, and concentrations of these enzymes in certain tissues are lower for starved individuals than for those that are well fed. We also show that the ratio of RNA to DNA (an index of protein synthetic capacity) is highly variable in nature and correlates with short-term changes in food availability. We also observed striking patterns in enzyme activity and RNA/DNA in nature, which are related to differences in rocky intertidal community structure. Differences among species and habitats are most pronounced in summer and are linked to high nearshore productivity at sites favored by suspension feeders and to exposure to stressful low-tide air temperatures in areas of low wave splash. These studies illustrate the great promise of using biochemical indicators to test ecological models, which predict changes in community structure along environmental gradients. Our results also suggest that biochemical indices must be carefully validated with laboratory studies, so that the indicator selected is likely to respond to the

  2. Transplant experiments uncover Baltic Sea basin-specific responses in bacterioplankton community composition and metabolic activities.

    Science.gov (United States)

    Lindh, Markus V; Figueroa, Daniela; Sjöstedt, Johanna; Baltar, Federico; Lundin, Daniel; Andersson, Agneta; Legrand, Catherine; Pinhassi, Jarone

    2015-01-01

    Anthropogenically induced changes in precipitation are projected to generate increased river runoff to semi-enclosed seas, increasing loads of terrestrial dissolved organic matter and decreasing salinity. To determine how bacterial community structure and functioning adjust to such changes, we designed microcosm transplant experiments with Baltic Proper (salinity 7.2) and Bothnian Sea (salinity 3.6) water. Baltic Proper bacteria generally reached higher abundances than Bothnian Sea bacteria in both Baltic Proper and Bothnian Sea water, indicating higher adaptability. Moreover, Baltic Proper bacteria growing in Bothnian Sea water consistently showed highest bacterial production and beta-glucosidase activity. These metabolic responses were accompanied by basin-specific changes in bacterial community structure. For example, Baltic Proper Pseudomonas and Limnobacter populations increased markedly in relative abundance in Bothnian Sea water, indicating a replacement effect. In contrast, Roseobacter and Rheinheimera populations were stable or increased in abundance when challenged by either of the waters, indicating an adjustment effect. Transplants to Bothnian Sea water triggered the initial emergence of particular Burkholderiaceae populations, and transplants to Baltic Proper water triggered Alteromonadaceae populations. Notably, in the subsequent re-transplant experiment, a priming effect resulted in further increases to dominance of these populations. Correlated changes in community composition and metabolic activity were observed only in the transplant experiment and only at relatively high phylogenetic resolution. This suggested an importance of successional progression for interpreting relationships between bacterial community composition and functioning. We infer that priming effects on bacterial community structure by natural episodic events or climate change induced forcing could translate into long-term changes in bacterial ecosystem process rates.

  3. Bacterial communities associated with Shinkaia crosnieri from the Iheya North, Okinawa Trough: Microbial diversity and metabolic potentials

    Science.gov (United States)

    Zhang, Jian; Zeng, Zhi-gang; Chen, Shuai; Sun, Li

    2018-04-01

    Shinkaia crosnieri is a galatheid crab endemic to the deep-sea hydrothermal systems in the Okinawa Trough. In this study, we systematically analyzed and compared the diversity and metabolic potentials of the microbial communities in different tissues (setae, gill, and intestine) of S. crosnieri by high-throughput sequencing technology and quantitative real-time polymerase chain reaction. Sequence analysis based on the V3-V4 regions of the 16S rRNA gene obtained 408,079 taxon tags, which covered 15 phyla, 22 classes, 32 orders, 42 families, and 25 genera. Overall, the microbial communities in all tissues were dominated by Epsilonproteobacteria and Gammaproteobacteria, of which Epsilonproteobacteria was the largest class and accounted for 85.24% of the taxon tags. In addition, 20 classes of bacteria were discovered for the first time to be associated with S. crosnieri and no archaea were detected. Comparative analysis showed that (i) bacteria from different tissues fell into different groups by β-diversity analysis, (ii) bacterial communities in intestine were similar to that in gill and much more diverse than that in setae, and the sulfur-oxidizing genus Sulfurovum was markedly enriched in intestine and gill. Furthermore, bacteria potentially involved in methane, nitrogen, and metal metabolisms were detected in all samples. The key genes of aprA/dsrA and pmoA involved in sulfate reducing and methane oxidization, respectively, were detected in the gill and gut communities for the first time, and pmoA was significantly more abundant in gill and setae than in intestine. These results provide the first comparative and relatively complete picture of the diversity and metabolic potentials of the bacteria in different tissues of S. crosnieri. These results also indicate that the composition of the microbial communities in hydrothermal fauna changes with time, suggesting the importance of environmental influence.

  4. Preliminary Study of Aquatic Hyphomycetes from Venezuelan streams

    OpenAIRE

    SMITS, Gunta; FERNÁNDEZ, Rafael; CRESSA, Claudia

    2007-01-01

    Fifty species of aquatic hyphomycetes from seven streams, six of which are located in Venezuelan National Parks are reported. Community similarity of hyphomycetes was low since only four species were common to all sites: Campylospora chaetocladia Ranzoni, Clavatospora tentacula Sv.Nilsson, Triscelophorus acuminatus Nawawi and Triscelophorus monosporus Ingold. The streams had unique species whose number varies between one and three. In Río Los Castillos the species were: Anguillospora longissi...

  5. Assessing Ecosystem Integrity And Macroinvertebrates Community Structure Towards Conservation Of Small Streams In Tanzania

    Directory of Open Access Journals (Sweden)

    Fredrick Ojija

    2017-02-01

    Full Text Available This study attempts to use biological indices such as Biological Monitoring Working Party BMWP Average Score Per Taxa ASPT and Hilsenhoff Family Biotic Index FBI in order to determine the ecosystem health and water quality of Nzovwe stream in Mbeya Tanzania. Macroinvertebrates were sampled from Nzovwe stream using semi-quantitative techniques from March to June 2016. About 500 meters of Nzovwe stream was divided into 5 sampling sites each site was 100 meters apart. The macroinvertebrates were collected from all the possible microhabitats of each site using a 250m mesh size D- frame kick net. Macroinvertebrate specimens were preserved in the 70 ethyl alcohol in the polyethylene bottles. The samples were identified to the family level using standard identification keys. The BMWP score and ASPT score indicated good and moderate stream water quality respectively. The FBI showed the stream had possibility of some organic pollution. The Shannon-Wiener diversity index shows the sampling sites were moderately polluted or possibly impaired. Macroinvertebrates in pollution class II were abundant suggesting moderate pollution. Moreover the Midge Insects Diptera and Snail indicated the stream water quality or ecosystem health is between unimpaired and possibly impaired. Based on these results the study concludes that the stream ecosystem is moderately polluted and therefore the study recommends a regular stream monitoring.

  6. Bridging the gap between theoretical ecology and real ecosystems: modeling invertebrate community composition in streams.

    Science.gov (United States)

    Schuwirth, Nele; Reichert, Peter

    2013-02-01

    For the first time, we combine concepts of theoretical food web modeling, the metabolic theory of ecology, and ecological stoichiometry with the use of functional trait databases to predict the coexistence of invertebrate taxa in streams. We developed a mechanistic model that describes growth, death, and respiration of different taxa dependent on various environmental influence factors to estimate survival or extinction. Parameter and input uncertainty is propagated to model results. Such a model is needed to test our current quantitative understanding of ecosystem structure and function and to predict effects of anthropogenic impacts and restoration efforts. The model was tested using macroinvertebrate monitoring data from a catchment of the Swiss Plateau. Even without fitting model parameters, the model is able to represent key patterns of the coexistence structure of invertebrates at sites varying in external conditions (litter input, shading, water quality). This confirms the suitability of the model concept. More comprehensive testing and resulting model adaptations will further increase the predictive accuracy of the model.

  7. Genome-driven evolutionary game theory helps understand the rise of metabolic interdependencies in microbial communities.

    Science.gov (United States)

    Zomorrodi, Ali R; Segrè, Daniel

    2017-11-16

    Metabolite exchanges in microbial communities give rise to ecological interactions that govern ecosystem diversity and stability. It is unclear, however, how the rise of these interactions varies across metabolites and organisms. Here we address this question by integrating genome-scale models of metabolism with evolutionary game theory. Specifically, we use microbial fitness values estimated by metabolic models to infer evolutionarily stable interactions in multi-species microbial "games". We first validate our approach using a well-characterized yeast cheater-cooperator system. We next perform over 80,000 in silico experiments to infer how metabolic interdependencies mediated by amino acid leakage in Escherichia coli vary across 189 amino acid pairs. While most pairs display shared patterns of inter-species interactions, multiple deviations are caused by pleiotropy and epistasis in metabolism. Furthermore, simulated invasion experiments reveal possible paths to obligate cross-feeding. Our study provides genomically driven insight into the rise of ecological interactions, with implications for microbiome research and synthetic ecology.

  8. Spray drift of pesticides and stream macroinvertebrates: Experimental evidence of impacts and effectiveness of mitigation measures

    Energy Technology Data Exchange (ETDEWEB)

    Maltby, Lorraine [Department of Animal and Plant Sciences, University of Sheffield, Western Bank, Sheffield S10 2TN (United Kingdom)], E-mail: l.maltby@sheffield.ac.uk; Hills, Louise [Department of Animal and Plant Sciences, University of Sheffield, Western Bank, Sheffield S10 2TN (United Kingdom)

    2008-12-15

    Impoverished stream communities in agricultural landscapes have been associated with pesticide contamination, but conclusive evidence of causality is rare. We address this deficiency by adopting an experimental approach to investigate the effects of the insecticides cypermethrin and chlorpyrifos on benthic macroinvertebrates. Three treatments were established and a combination of biomarker, bioassay and biomonitoring approaches was employed to investigate, individual, population and community-level effects. Animals deployed during pesticide application had altered enzyme activity, depressed feeding rate and reduced survival, but these effects were only observed where pesticide was sprayed to the stream edge. There were no clear pesticide-related effects on macroinvertebrate community structure or on the population densities of individual species. Hence, short-term pesticide exposure did cause individual-level effects in stream macroinvertebrates, but these were not translated to effects at the population or community-level and were effectively mitigated by the adoption of a no-spray buffer zone. - Pulsed pesticide exposures via spray drift adversely affected stream invertebrates but did not cause population or community-level effects and were mitigated by no-spray buffer zones.

  9. Effect of a dam on epilithic algal communities of a mountain stream: before-after dam construction comparison

    Directory of Open Access Journals (Sweden)

    Luciana Cibils Martina

    2013-02-01

    Full Text Available In this study we evaluated the effect of a dam on epilithic algal communities by analyzing community response after dam construction and by comparing community composition, structure and biomass upstream and downstream of the dam. Samples of epilithic algae and environmental data were collected at each site during high and low water periods before and after dam construction in Achiras Stream (Córdoba, Argentina. Ordinations showed modifications in algal assemblages after dam construction and downstream of the dam. Ordinations also suggested a loss of seasonality at the downstream site since the assemblages were similar between hydrological periods after dam construction. Indicator species, obtained by the Indicator Value method, showed that, after dam construction, there could have been an increase in nutrient concentration and a release of plankton from the impoundment. Abundance, richness and diversity were altered after dam construction as assessed by ANOVAs derived from a modified BACI Design. Proportion of early-successional species was higher at the upstream site while late-successional species were dominant at the downstream site, as predicted. Lower fluctuations in discharge downstream of the dam may have helped succession advance, whereas at the upstream site, mainly during the high water period, floods could have caused sloughing of life forms from the outer layers of the biofilm, resetting the algal community to early successional stages. It may be concluded that the dam affected algal community and favored succession advance mainly by reducing current velocity and flow fluctuations.

  10. Combined effects of hydrologic alteration and cyprinid fish in mediating biogeochemical processes in a Mediterranean stream.

    Science.gov (United States)

    Rubio-Gracia, Francesc; Almeida, David; Bonet, Berta; Casals, Frederic; Espinosa, Carmen; Flecker, Alexander S; García-Berthou, Emili; Martí, Eugènia; Tuulaikhuu, Baigal-Amar; Vila-Gispert, Anna; Zamora, Lluis; Guasch, Helena

    2017-12-01

    Flow regimes are important drivers of both stream community and biogeochemical processes. However, the interplay between community and biogeochemical responses under different flow regimes in streams is less understood. In this study, we investigated the structural and functional responses of periphyton and macroinvertebrates to different densities of the Mediterranean barbel (Barbus meridionalis, Cyprinidae) in two stream reaches differing in flow regime. The study was conducted in Llémena Stream, a small calcareous Mediterranean stream with high nutrient levels. We selected a reach with permanent flow (permanent reach) and another subjected to flow regulation (regulated reach) with periods of flow intermittency. At each reach, we used in situ cages to generate 3 levels of fish density. Cages with 10 barbels were used to simulate high fish density (>7indm -2 ); cages with open sides were used as controls (i.e. exposed to actual fish densities of each stream reach) thus having low fish density; and those with no fish were used to simulate the disappearance of fish that occurs with stream drying. Differences in fish density did not cause significant changes in periphyton biomass and macroinvertebrate density. However, phosphate uptake by periphyton was enhanced in treatments lacking fish in the regulated reach with intermittent flow but not in the permanent reach, suggesting that hydrologic alteration hampers the ability of biotic communities to compensate for the absence of fish. This study indicates that fish density can mediate the effects of anthropogenic alterations such as flow intermittence derived from hydrologic regulation on stream benthic communities and associated biogeochemical processes, at least in eutrophic streams. Copyright © 2017. Published by Elsevier B.V.

  11. Stream Response to an Extreme Defoliation Event

    Science.gov (United States)

    Gold, A.; Loffredo, J.; Addy, K.; Bernhardt, E. S.; Berdanier, A. B.; Schroth, A. W.; Inamdar, S. P.; Bowden, W. B.

    2017-12-01

    Extreme climatic events are known to profoundly impact stream flow and stream fluxes. These events can also exert controls on insect outbreaks, which may create marked changes in stream characteristics. The invasive Gypsy Moth (Lymantria dispar dispar) experiences episodic infestations based on extreme climatic conditions within the northeastern U.S. In most years, gypsy moth populations are kept in check by diseases. In 2016 - after successive years of unusually warm, dry spring and summer weather -gypsy moth caterpillars defoliated over half of Rhode Island's 160,000 forested ha. No defoliation of this magnitude had occurred for more than 30 years. We examined one RI headwater stream's response to the defoliation event in 2016 compared with comparable data in 2014 and 2015. Stream temperature and flow was gauged continuously by USGS and dissolved oxygen (DO) was measured with a YSI EXO2 sonde every 30 minutes during a series of deployments in the spring, summer and fall from 2014-2016. We used the single station, open channel method to estimate stream metabolism metrics. We also assessed local climate and stream temperature data from 2009-2016. We observed changes in stream responses during the defoliation event that suggest changes in ET, solar radiation and heat flux. Although the summer of 2016 had more drought stress (PDSI) than previous years, stream flow occurred throughout the summer, in contrast to several years with lower drought stress when stream flow ceased. Air temperature in 2016 was similar to prior years, but stream temperature was substantially higher than the prior seven years, likely due to the loss of canopy shading. DO declined dramatically in 2016 compared to prior years - more than the rising stream temperatures would indicate. Gross Primary Productivity was significantly higher during the year of the defoliation, indicating more total fixation of inorganic carbon from photo-autotrophs. In 2016, Ecosystem Respiration was also higher and Net

  12. Prokaryotic communities and operating metabolisms in the surface and the permafrost of Deception Island (Antarctica)

    NARCIS (Netherlands)

    Blanco, Yolanda; Prieto-Ballesteros, Olga; Gómez, Manuel J.; Moreno-Paz, Mercedes; García-Villadangos, Miriam; Rodríguez-Manfredi, José Antonio; Cruz-Gil, Patricia; Sánchez-Román, Mónica; Rivas, Luis A.; Parro, Victor

    In this study we examined the microbial community composition and operating metabolisms on the surface and in the permafrost of Deception Island, (Antarctica) with an on site antibody microarray biosensor. Samples (down to a depth of 4.2m) were analysed with LDChip300 (Life Detector Chip), an

  13. Community-Level Response of Fishes and Aquatic Macroinvertebrates to Stream Restoration in a Third-Order Tributary of the Potomac River, USA

    Directory of Open Access Journals (Sweden)

    Stephen M. Selego

    2012-01-01

    Full Text Available Natural stream channel design principles and riparian restoration practices were applied during spring 2010 to an agriculturally impaired reach of the Cacapon River, a tributary of the Potomac River which flows into the Chesapeake Bay. Aquatic macroinvertebrates and fishes were sampled from the restoration reach, two degraded control, and two natural reference reaches prior to, concurrently with, and following restoration (2009 through 2010. Collector filterers and scrapers replaced collector gatherers as the dominant macroinvertebrate functional feeding groups in the restoration reach. Before restoration, based on indices of biotic integrity (IBI, the restoration reach fish and macroinvertebrate communities closely resembled those sampled from the control reaches, and after restoration more closely resembled those from the reference reaches. Although the macroinvertebrate community responded more favorably than the fish community, both communities recovered quickly from the temporary impairment caused by the disturbance of restoration procedures and suggest rapid improvement in local ecological conditions.

  14. Stream Macroinvertebrate Occurrence along Gradients in Organic Pollution and Eutrophication

    DEFF Research Database (Denmark)

    Friberg, Nikolai; Skriver, Jens; Larsen, Søren Erik

    2010-01-01

    We analysed a large number of concurrent samples of macroinvertebrate communities and chemical indicators of eutrophication and organic pollution [total-P, total-N, NH4-N, biological oxygen demand (BOD5)] from 594 Danish stream sites. Samples were taken over an 11-year time span as part of the Da......We analysed a large number of concurrent samples of macroinvertebrate communities and chemical indicators of eutrophication and organic pollution [total-P, total-N, NH4-N, biological oxygen demand (BOD5)] from 594 Danish stream sites. Samples were taken over an 11-year time span as part...

  15. Transplant experiments uncover Baltic Sea basin-specific responses in bacterioplankton community composition and metabolic activities

    Directory of Open Access Journals (Sweden)

    Markus V Lindh

    2015-04-01

    Full Text Available Anthropogenically induced changes in precipitation are projected to generate increased river runoff to semi-enclosed seas, intensifying loads of terrestrial dissolved organic matter and decreasing salinity. To determine how bacterial community structure and functioning adjust to such changes, we designed microcosm transplant experiments with Baltic Proper (salinity 7.2 and Bothnian Sea (salinity 3.6 water. Baltic Proper bacteria generally reached higher abundance than Bothnian Sea bacteria in both Baltic Proper and Bothnian Sea water, indicating a higher adaptability. Moreover, Baltic Proper bacteria growing in Bothnian Sea water consistently showed highest bacterial production and beta-glucosidase activity. These metabolic responses were accompanied by basin-specific changes in bacterial community structure. For example, Baltic Proper Pseudomonas and Limnobacter populations increased markedly in relative abundance in Bothnian Sea water, indicating replacement. In contrast, Roseobacter and Rheinheimera populations were stable or increased in abundance when challenged by either of the waters, indicating adjustment. Transplants to Bothnian Sea water triggered the initial emergence of particular Burkholderiaceae populations, and transplants to Baltic Proper water triggered Alteromonadaceae populations. Notably, in the subsequent re-transplant experiment, the original triggering, or priming effect, resulted in further increases to dominance of these populations. Correlated changes in community composition and metabolic activity were observed only in the transplant experiment, and only at relatively high phylogenetic resolution. This suggested an importance of successional progression for interpreting relationships between bacterial community composition and functioning. We infer that priming effects on bacterial community structure by natural episodic events or climate change induced forcing could translate into long-term changes in bacterial

  16. Metabolic and microbial community dynamics during the hydrolytic and acidogenic fermentation in a leach-bed process

    Energy Technology Data Exchange (ETDEWEB)

    Straeuber, Heike; Kleinsteuber, Sabine [UFZ - Helmholtz Centre for Environmental Research, Leipzig (Germany). Dept. of Bioenergy; UFZ - Helmholtz Centre for Environmental Research, Leipzig (Germany). Dept. of Environmental Microbiology; Schroeder, Martina [UFZ - Helmholtz Centre for Environmental Research, Leipzig (Germany). Dept. of Bioenergy

    2012-12-15

    Biogas production from lignocellulosic feedstock not competing with food production can contribute to a sustainable bioenergy system. The hydrolysis is the rate-limiting step in the anaerobic digestion of solid substrates such as straw. Hence, a detailed understanding of the metabolic processes during the steps of hydrolysis and acidogenesis is required to improve process control strategies. The fermentation products formed during the acidogenic fermentation of maize silage as a model substrate in a leach-bed process were determined by gas and liquid chromatography. The bacterial community dynamics was monitored by terminal restriction fragment length polymorphism analysis. The community profiles were correlated with the process data using multivariate statistics. The batch process comprised three metabolic phases characterized by different fermentation products. The bacterial community dynamics correlated with the production of the respective metabolites. In phase 1, lactic and acetic acid fermentations dominated. Accordingly, bacteria of the genera Lactobacillus and Acetobacter were detected. In phase 2, the metabolic pathways shifted to butyric acid fermentation, accompanied by the production of hydrogen and carbon dioxide and a dominance of the genus Clostridium. In phase 3, phylotypes affiliated with Ruminococcaceae and Lachnospiraceae prevailed, accompanied by the formation of caproic and acetic acids, and a high gas production rate. A clostridial butyric type of fermentation was predominant in the acidogenic fermentation of maize silage, whereas propionic-type fermentation was marginal. As the metabolite composition resulting from acidogenesis affects the subsequent methanogenic performance, process control should focus on hydrolysis/acidogenesis when solid substrates are digested. (orig.)

  17. Monitoring of streams: macrozoobenthos and accumulation of heavy metals and radionuclides in bottom sediments

    International Nuclear Information System (INIS)

    Arbaciauskas, K.; Mackeviciene, G.; Striupkuviene, N.; Motiejunas, S; Kreslauskaite, R.

    1998-01-01

    To evaluate the environmental quality of streams in integrated monitoring sites (IMS) and agrostations (AS), the macrozoobenthos communities and accumulation of heavy metals and radionuclides in bottom sediments were studied during 1993-1996. Samples of macrozoobenthos were collected in stream biotopes which were recommended for monitoring. Community biodiversity was assessed by Shannon-Wiener and Simpson indices, and water quality of streams was estimated by Trent and Mean Chandler biotic indices. Heavy metal (Pb, Cd, Cu, Cr, Ni, Mn) concentrations and radionuclide ( 137 Cs, 134 Cs, 40 K, 90 Sr) activity were determined in sediments. Macrozoobenthos communities indicated that the studied streams were clean waters. The heavy metal concentrations in surficial sediments showed annual and seasonal changes and differences between monitoring sites. The Cu concentration in the soft turfy stream sediments at the Aukstaitija IMS was twice as high as that in sediments of other monitoring streams with hard sandy-gravel bottoms. During 1994-1996, the Ni concentration decreased, while levels of Cu, Cd and Cr were relatively stable. The Pb concentrations decreased in all IMS, while those in AS increased. The concentration of 137 Cs was relatively stable in agrostation streams. Compared to levels in 1993, an increase of 137 Cs activity was observed in sediments at the Dzuklija IMS during 1995-1996. 90 Sr activity fluctuated in the monitoring sites from 1.6 to 3.7 Bq/kg dry weight. (author)

  18. Climate change and alpine stream biology

    DEFF Research Database (Denmark)

    Hotaling, Scott; Finn, Debra S.; Joseph Giersch, J.

    2017-01-01

    micro- to macroscopic organisms and genes to communities. Herein, we describe the current state of alpine stream biology from an organism-focused perspective. We begin by reviewing seven standard and emerging approaches that combine to form the current state of the discipline. We follow with a call...

  19. Rumen microbial communities influence metabolic phenotypes in lambs

    Directory of Open Access Journals (Sweden)

    Diego P. Morgavi

    2015-10-01

    Full Text Available The rumen microbiota is an essential part of ruminants forging their nutrition and health. Despite its importance, it is not fully understood how various groups of rumen microbes affect host-microbe relationships and functions. The aim of the study was to simultaneously explore the rumen microbiota and the metabolic phenotype of lambs for identifying host-microbe associations and potential biomarkers of digestive functions. Twin lambs, separated in two groups after birth were exposed to practices (isolation and gavage with rumen fluid with protozoa or protozoa-depleted that differentially restricted the acquisition of microbes. Rumen microbiota, fermentation parameters, digestibility and growth were monitored for up to 31 weeks of age. Microbiota assembled in isolation from other ruminants lacked protozoa and had low bacterial and archaeal diversity whereas digestibility was not affected. Exposure to adult sheep microbiota increased bacterial and archaeal diversity independently of protozoa presence. For archaea, Methanomassiliicoccales displaced Methanosphaera. Notwithstanding, protozoa induced differences in functional traits such as digestibility and significantly shaped bacterial community structure, notably Ruminococcaceae and Lachnospiraceae lower up to 6 folds, Prevotellaceae lower by ~40%, and Clostridiaceae and Veillonellaceae higher up to 10 folds compared to microbiota without protozoa. An orthogonal partial least squares-discriminant analysis of urinary metabolome matched differences in microbiota structure. Discriminant metabolites were mainly involved in amino acids and protein metabolic pathways while a negative interaction was observed between methylotrophic methanogens Methanomassiliicoccales and trimethylamine N-oxide. These results stress the influence of gut microbes on animal phenotype and show the potential of metabolomics for monitoring rumen microbial functions.

  20. Alignment data streams for the ATLAS inner detector

    International Nuclear Information System (INIS)

    Pinto, B; Amorim, A; Pereira, P; Elsing, M; Hawkings, R; Schieck, J; Garcia, S; Schaffer, A; Ma, H; Anjos, A

    2008-01-01

    The ATLAS experiment uses a complex trigger strategy to be able to reduce the Event Filter rate output, down to a level that allows the storage and processing of these data. These concepts are described in the ATLAS Computing Model which embraces Grid paradigm. The output coming from the Event Filter consists of four main streams: physical stream, express stream, calibration stream, and diagnostic stream. The calibration stream will be transferred to the Tier-0 facilities that will provide the prompt reconstruction of this stream with a minimum latency of 8 hours, producing calibration constants of sufficient quality to allow a first-pass processing. The Inner Detector community is developing and testing an independent common calibration stream selected at the Event Filter after track reconstruction. It is composed of raw data, in byte-stream format, contained in Readout Buffers (ROBs) with hit information of the selected tracks, and it will be used to derive and update a set of calibration and alignment constants. This option was selected because it makes use of the Byte Stream Converter infrastructure and possibly gives better bandwidth usage and storage optimization. Processing is done using specialized algorithms running in the Athena framework in dedicated Tier-0 resources, and the alignment constants will be stored and distributed using the COOL conditions database infrastructure. This work is addressing in particular the alignment requirements, the needs for track and hit selection, and the performance issues

  1. Primary prevention of metabolic syndrome in the community using an evidence-based exercise program.

    Science.gov (United States)

    Dalleck, Lance C; Van Guilder, Gary P; Quinn, Esther M; Bredle, Don L

    2013-10-01

    The purpose of the present study was to examine the effectiveness of a community-based exercise program to lower metabolic syndrome (MetS) risk factors. MetS components were retrospectively analyzed in 332 adults (190 women, 142 men) before and after a 14-week supervised community exercise program between January 2007 and May 2012 at the University of Wisconsin-Eau Claire. Except for total cholesterol, all health outcome variables, including the 5 MetS components, improved following community exercise. Individuals having MetS decreased from 22.3% before participation to 13.5% at end (pexercise program is an effective method to reduce cardiovascular risk in adults by substantially decreasing the prevalence of MetS and its components. Greater volumes of exercise may increase the likelihood of MetS risk factor elimination. Copyright © 2013 Elsevier Inc. All rights reserved.

  2. Establishment and metabolic analysis of a model microbial community for understanding trophic and electron accepting interactions of subsurface anaerobic environments

    Directory of Open Access Journals (Sweden)

    Yang Zamin K

    2010-05-01

    Full Text Available Abstract Background Communities of microorganisms control the rates of key biogeochemical cycles, and are important for biotechnology, bioremediation, and industrial microbiological processes. For this reason, we constructed a model microbial community comprised of three species dependent on trophic interactions. The three species microbial community was comprised of Clostridium cellulolyticum, Desulfovibrio vulgaris Hildenborough, and Geobacter sulfurreducens and was grown under continuous culture conditions. Cellobiose served as the carbon and energy source for C. cellulolyticum, whereas D. vulgaris and G. sulfurreducens derived carbon and energy from the metabolic products of cellobiose fermentation and were provided with sulfate and fumarate respectively as electron acceptors. Results qPCR monitoring of the culture revealed C. cellulolyticum to be dominant as expected and confirmed the presence of D. vulgaris and G. sulfurreducens. Proposed metabolic modeling of carbon and electron flow of the three-species community indicated that the growth of C. cellulolyticum and D. vulgaris were electron donor limited whereas G. sulfurreducens was electron acceptor limited. Conclusions The results demonstrate that C. cellulolyticum, D. vulgaris, and G. sulfurreducens can be grown in coculture in a continuous culture system in which D. vulgaris and G. sulfurreducens are dependent upon the metabolic byproducts of C. cellulolyticum for nutrients. This represents a step towards developing a tractable model ecosystem comprised of members representing the functional groups of a trophic network.

  3. Streams with Strahler Stream Order

    Data.gov (United States)

    Minnesota Department of Natural Resources — Stream segments with Strahler stream order values assigned. As of 01/08/08 the linework is from the DNR24K stream coverages and will not match the updated...

  4. Relative performance of three stream bed stability indices as indicators of stream health.

    Science.gov (United States)

    Kusnierz, Paul C; Holbrook, Christopher M

    2017-10-16

    Bed stability is an important stream habitat attribute because it affects geomorphology and biotic communities. Natural resource managers desire indices of bed stability that can be used under a wide range of geomorphic conditions, are biologically meaningful, and are easily incorporated into sampling protocols. To eliminate potential bias due to presence of instream wood and increase precision of stability values, we modified a stream bed instability index (ISI) to include measurements of bankfull depth (d bf ) and median particle diameter (D 50 ) only in riffles and increased the pebble count to decrease variability (i.e., increase precision) in D 50 . The new riffle-based instability index (RISI) was compared to two established indices: ISI and the riffle stability index (RSI). RISI and ISI were strongly associated with each other but neither was closely associated with RSI. RISI and ISI were closely associated with both a diatom- and two macrovertebrate-based stream health indices, but RSI was only weakly associated with the macroinvertebrate indices. Unexpectedly, precision of D 50 did not differ between RISI and ISI. Results suggest that RISI is a viable alternative to both ISI and RSI for evaluating bed stability in multiple stream types. With few data requirements and a simple protocol, RISI may also better conform to riffle-based sampling methods used by some water quality practitioners.

  5. Stream Classification Tool User Manual: For Use in Applications in Hydropower-Related Evironmental Mitigation

    Energy Technology Data Exchange (ETDEWEB)

    McManamay, Ryan A. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Troia, Matthew J. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); DeRolph, Christopher R. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Samu, Nicole M. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)

    2016-01-01

    Stream classifications are an inventory of different types of streams. Classifications help us explore similarities and differences among different types of streams, make inferences regarding stream ecosystem behavior, and communicate the complexities of ecosystems. We developed a nested, layered, and spatially contiguous stream classification to characterize the biophysical settings of stream reaches within the Eastern United States (~ 900,000 reaches). The classification is composed of five natural characteristics (hydrology, temperature, size, confinement, and substrate) along with several disturbance regime layers, and each was selected because of their relevance to hydropower mitigation. We developed the classification at the stream reach level using the National Hydrography Dataset Plus Version 1 (1:100k scale). The stream classification is useful to environmental mitigation for hydropower dams in multiple ways. First, it creates efficiency in the regulatory process by creating an objective and data-rich means to address meaningful mitigation actions. Secondly, the SCT addresses data gaps as it quickly provides an inventory of hydrology, temperature, morphology, and ecological communities for the immediate project area, but also surrounding streams. This includes identifying potential reference streams as those that are proximate to the hydropower facility and fall within the same class. These streams can potentially be used to identify ideal environmental conditions or identify desired ecological communities. In doing so, the stream provides some context for how streams may function, respond to dam regulation, and an overview of specific mitigation needs. Herein, we describe the methodology in developing each stream classification layer and provide a tutorial to guide applications of the classification (and associated data) in regulatory settings, such as hydropower (re)licensing.

  6. Quality of streams in Johnson County, Kansas, 2002--10

    Science.gov (United States)

    Rasmussen, Teresa J.; Stone, Mandy S.; Poulton, Barry C.; Graham, Jennifer L.

    2012-01-01

    Stream quality in Johnson County, northeastern Kansas, was assessed on the basis of land use, hydrology, stream-water and streambed-sediment chemistry, riparian and in-stream habitat, and periphyton and macroinvertebrate community data collected from 22 sites during 2002 through 2010. Stream conditions at the end of the study period are evaluated and compared to previous years, stream biological communities and physical and chemical conditions are characterized, streams are described relative to Kansas Department of Health and Environment impairment categories and water-quality standards, and environmental factors that most strongly correlate with biological stream quality are evaluated. The information is useful for improving water-quality management programs, documenting changing conditions with time, and evaluating compliance with water-quality standards, total maximum daily loads (TMDLs), National Pollutant Discharge Elimination System (NPDES) permit conditions, and other established guidelines and goals. Constituent concentrations in water during base flow varied across the study area and 2010 conditions were not markedly different from those measured in 2003, 2004, and 2007. Generally the highest specific conductance and concentrations of dissolved solids and major ions in water occurred at urban sites except the upstream Cedar Creek site, which is rural and has a large area of commercial and industrial land less than 1 mile upstream on both sides of the creek. The highest base-flow nutrient concentrations in water occurred downstream from wastewater treatment facilities. Water chemistry data represent base-flow conditions only, and do not show the variability in concentrations that occurs during stormwater runoff. Constituent concentrations in streambed sediment also varied across the study area and some notable changes occurred from previously collected data. High organic carbon and nutrient concentrations at the rural Big Bull Creek site in 2003 decreased

  7. Distinctive channel geometry and riparian vegetation: A geomorphic classification for arid ephemeral streams

    Science.gov (United States)

    Sutfin, N.; Shaw, J. R.; Wohl, E. E.; Cooper, D.

    2012-12-01

    Interactions between hydrology, channel form, and riparian vegetation along arid ephemeral streams are not thoroughly understood and current stream classifications do not adequately represent variability in channel geometry and associated riparian communities. Relatively infrequent hydrologic disturbances in dryland environments are responsible for creation and maintenance of channel form that supports riparian communities. To investigate the influence of channel characteristics on riparian vegetation in the arid southwestern United States, we develop a geomorphic classification for arid ephemeral streams based on the degree of confinement and the composition of confining material that provide constraints on available moisture. Our conceptual model includes five stream types: 1) bedrock channels entirely confined by exposed bedrock and devoid of persistent alluvium; 2) bedrock with alluvium channels at least partially confined by bedrock but containing enough alluvium to create bedforms that persist through time; 3) incised alluvium channels bound only by unconsolidated alluvial material into which they are incised; 4) braided washes that exhibit multi-thread, braided characteristics regardless of the composition of confining material; and 5) piedmont headwater 0-2nd order streams (Strahler) confined only by unconsolidated alluvium and which initiate as secondary channels on piedmont surfaces. Eighty-six study reaches representing the five stream types were surveyed on the U.S. Army Yuma Proving Ground in the Sonoran Desert of southwestern Arizona. Non-parametric multivariate analysis of variance (PERMANOVA) indicates significant differences between the five stream types with regards to channel geometry (i.e., stream gradient, width-to-depth ratio, the ratio between valley width and channel width (Wv/Wc), shear stress, and unit stream power) and riparian vegetation (i.e., presence and canopy coverage by species, canopy stratum, and life form). Discriminant analysis

  8. Impact of storm events on the structure of a stream microbiome

    Science.gov (United States)

    The microbial structural and/or functional state in a stream community is assumed to be in relative stasis until a perturbation (e.g., runoff event with entrained pollutants) affects the community structure and its functional state. Quantifying these changes and resolving the spe...

  9. Anthropogenic and natural sources of acidity and metals and their influence on the structure of stream food webs.

    Science.gov (United States)

    Hogsden, Kristy L; Harding, Jon S

    2012-03-01

    We compared food web structure in 20 streams with either anthropogenic or natural sources of acidity and metals or circumneutral water chemistry in New Zealand. Community and diet analysis indicated that mining streams receiving anthropogenic inputs of acidic and metal-rich drainage had much simpler food webs (fewer species, shorter food chains, less links) than those in naturally acidic, naturally high metal, and circumneutral streams. Food webs of naturally high metal streams were structurally similar to those in mining streams, lacking fish predators and having few species. Whereas, webs in naturally acidic streams differed very little from those in circumneutral streams due to strong similarities in community composition and diets of secondary and top consumers. The combined negative effects of acidity and metals on stream food webs are clear. However, elevated metal concentrations, regardless of source, appear to play a more important role than acidity in driving food web structure. Copyright © 2011 Elsevier Ltd. All rights reserved.

  10. Shifts in coastal sediment oxygenation cause pronounced changes in microbial community composition and associated metabolism.

    Science.gov (United States)

    Broman, Elias; Sjöstedt, Johanna; Pinhassi, Jarone; Dopson, Mark

    2017-08-09

    A key characteristic of eutrophication in coastal seas is the expansion of hypoxic bottom waters, often referred to as 'dead zones'. One proposed remediation strategy for coastal dead zones in the Baltic Sea is to mix the water column using pump stations, circulating oxygenated water to the sea bottom. Although microbial metabolism in the sediment surface is recognized as key in regulating bulk chemical fluxes, it remains unknown how the microbial community and its metabolic processes are influenced by shifts in oxygen availability. Here, coastal Baltic Sea sediments sampled from oxic and anoxic sites, plus an intermediate area subjected to episodic oxygenation, were experimentally exposed to oxygen shifts. Chemical, 16S rRNA gene, metagenomic, and metatranscriptomic analyses were conducted to investigate changes in chemistry fluxes, microbial community structure, and metabolic functions in the sediment surface. Compared to anoxic controls, oxygenation of anoxic sediment resulted in a proliferation of bacterial populations in the facultative anaerobic genus Sulfurovum that are capable of oxidizing toxic sulfide. Furthermore, the oxygenated sediment had higher amounts of RNA transcripts annotated as sqr, fccB, and dsrA involved in sulfide oxidation. In addition, the importance of cryptic sulfur cycling was highlighted by the oxidative genes listed above as well as dsvA, ttrB, dmsA, and ddhAB that encode reductive processes being identified in anoxic and intermediate sediments turned oxic. In particular, the intermediate site sediments responded differently upon oxygenation compared to the anoxic and oxic site sediments. This included a microbial community composition with more habitat generalists, lower amounts of RNA transcripts attributed to methane oxidation, and a reduced rate of organic matter degradation. These novel data emphasize that genetic expression analyses has the power to identify key molecular mechanisms that regulate microbial community responses

  11. Evaluation of Macroinvertebrate Communities and Habitat for Selected Stream Reaches at Los Alamos National Laboratory

    Energy Technology Data Exchange (ETDEWEB)

    L.J. Henne; K.J. Buckley

    2005-08-12

    This is the second aquatic biological monitoring report generated by Los Alamos National Laboratory's (LANL's) Water Quality and Hydrology Group. The study has been conducted to generate impact-based assessments of habitat and water quality for LANL waterways. The monitoring program was designed to allow for the detection of spatial and temporal trends in water and habitat quality through ongoing, biannual monitoring of habitat characteristics and benthic aquatic macroinvertebrate communities at six key sites in Los Alamos, Sandia, Water, Pajarito, and Starmer's Gulch Canyons. Data were collected on aquatic habitat characteristics, channel substrate, and macroinvertebrate communities during 2001 and 2002. Aquatic habitat scores were stable between 2001 and 2002 at all locations except Starmer's Gulch and Pajarito Canyon, which had lower scores in 2002 due to low flow conditions. Channel substrate changes were most evident at the upper Los Alamos and Pajarito study reaches. The macroinvertebrate Stream Condition Index (SCI) indicated moderate to severe impairment at upper Los Alamos Canyon, slight to moderate impairment at upper Sandia Canyon, and little or no impairment at lower Sandia Canyon, Starmer's Gulch, and Pajarito Canyon. Habitat, substrate, and macroinvertebrate data from the site in upper Los Alamos Canyon indicated severe impacts from the Cerro Grande Fire of 2000. Impairment in the macroinvertebrate community at upper Sandia Canyon was probably due to effluent-dominated flow at that site. The minimal impairment SCI scores for the lower Sandia site indicated that water quality improved with distance downstream from the outfall at upper Sandia Canyon.

  12. Bioassessment in nonperennial streams: Hydrologic stability influences assessment validity

    Science.gov (United States)

    Mazor, R. D.; Stein, E. D.; Schiff, K.; Ode, P.; Rehn, A.

    2011-12-01

    Nonperennial streams pose a challenge for bioassessment, as assessment tools developed in perennial streams may not work in these systems. For example, indices of biotic integrity (IBIs) developed in perennial streams may give improper indications of impairment in nonperennial streams, or may be unstable. We sampled benthic macroinvertebrates from 12 nonperennial streams in southern California. In addition, we deployed loggers to obtain continuous measures of flow. 3 sites were revisited over 2 years. For each site, we calculated several metrics, IBIs, and O/E scores to determine if assessments were consistent and valid throughout the summer. Hydrology varied widely among the streams, with several streams drying between sampling events. IBIs suggested good ecological health at the beginning of the study, but declined sharply at some sites. Multivariate ordination suggested that, despite differences among sites, changes in community structure were similar, with shifts from Ephemeroptera, Plecoptera, and Trichoptera to Coleoptera and more tolerant organisms. Site revisits revealed a surprising level of variability, as 2 of the 3 revisited sites had perennial or near-perennial flow in the second year of sampling. IBI scores were more consistent in streams with stable hydrographs than in those with strongly intermittent hydrographs. These results suggest that nonperennial streams can be monitored successfully, but they may require short index periods and distinct metrics from those used in perennial streams. In addition, better approaches to mapping nonperennial streams are required.

  13. Effects of Didymosphenia geminata massive growth on stream communities: Smaller organisms and simplified food web structure.

    Science.gov (United States)

    Ladrera, Rubén; Gomà, Joan; Prat, Narcís

    2018-01-01

    . geminata creates a community dominated by small organisms that is clearly different from the existing communities in the same stream where there is an absence of massive growths.

  14. Spatial simulation of smallmouth bass in streams

    International Nuclear Information System (INIS)

    Jager, H.I.; Schmoyer, D.D.; Sale, M.J.; Van Winkle, W.; DeAngelis, D.L.; Sabo, M.J.

    1993-01-01

    The hydropower industry and its regulators are hampered by the inability to predict the relationship between alternative flow regimes and fish population response. We have developed a spatially explicit, individual-based model of populations of small-mouth bass in streams as part of the Compensatory Mechanisms in Fish Populations Program (see Sale and Otto 1991). In the model, the profitability of alternative stream locations varies in response to habitat depth and velocity through changes in the frequency of prey encounters and the metabolic costs experienced by fish. We conducted an evaluation of our hydraulic simulation at the scale of individual stream cells. The potential error in predictions for individual cell velocities suggests that larger-scale model predictions for the representative reach are most appropriate. At this scale, the model appears to produce realistic patterns in the growth and dispersal of young-of-year small-mouth bass. This verification step allows us to proceed with greater confidence in evaluating the original question of how small-mouth bass populations respond to alternative flow regimes

  15. Simulating the effect of climate change on stream temperature in the Trout Lake Watershed, Wisconsin

    Energy Technology Data Exchange (ETDEWEB)

    Selbig, William R., E-mail: wrselbig@usgs.gov

    2015-07-15

    The potential for increases in stream temperature across many spatial and temporal scales as a result of climate change can pose a difficult challenge for environmental managers, especially when addressing thermal requirements for sensitive aquatic species. This study evaluates simulated changes to the thermal regime of three northern Wisconsin streams in response to a projected changing climate using a modeling framework and considers implications of thermal stresses to the fish community. The Stream Network Temperature Model (SNTEMP) was used in combination with a coupled groundwater and surface water flow model to assess forecasts in climate from six global circulation models and three emission scenarios. Model results suggest that annual average stream temperature will steadily increase approximately 1.1 to 3.2 °C (varying by stream) by the year 2100 with differences in magnitude between emission scenarios. Daily mean stream temperature during the months of July and August, a period when cold-water fish communities are most sensitive, showed excursions from optimal temperatures with increased frequency compared to current conditions. Projections of daily mean stream temperature, in some cases, were no longer in the range necessary to sustain a cold water fishery. - Highlights: • A stream temperature model was calibrated for three streams in northern Wisconsin. • The effect of climate change on stream temperature was simulated in each stream. • Annual average stream temperature was projected to rise from 1 to 3 °C by 2100. • Forecasts of stream temperature exceeded optimal ranges for brook trout.

  16. Indoor Heating Drives Water Bacterial Growth and Community Metabolic Profile Changes in Building Tap Pipes during the Winter Season.

    Science.gov (United States)

    Zhang, Hai-Han; Chen, Sheng-Nan; Huang, Ting-Lin; Shang, Pan-Lu; Yang, Xiao; Ma, Wei-Xing

    2015-10-27

    The growth of the bacterial community harbored in indoor drinking water taps is regulated by external environmental factors, such as indoor temperature. However, the effect of indoor heating on bacterial regrowth associated with indoor drinking water taps is poorly understood. In the present work, flow cytometry and community-level sole-carbon-source utilization techniques were combined to explore the effects of indoor heating on water bacterial cell concentrations and community carbon metabolic profiles in building tap pipes during the winter season. The results showed that the temperature of water stagnated overnight ("before") in the indoor water pipes was 15-17 °C, and the water temperature decreased to 4-6 °C after flushing for 10 min ("flushed"). The highest bacterial cell number was observed in water stagnated overnight, and was 5-11 times higher than that of flushed water. Meanwhile, a significantly higher bacterial community metabolic activity (AWCD590nm) was also found in overnight stagnation water samples. The significant "flushed" and "taps" values indicated that the AWCD590nm, and bacterial cell number varied among the taps within the flushed group (p heating periods.

  17. Response of stream invertebrates to short-term salinization: A mesocosm approach

    International Nuclear Information System (INIS)

    Cañedo-Argüelles, Miguel; Grantham, Theodore E.; Perrée, Isabelle; Rieradevall, Maria; Céspedes-Sánchez, Raquel; Prat, Narcís

    2012-01-01

    Salinization is a major and growing threat to freshwater ecosystems, yet its effects on aquatic invertebrates have been poorly described at a community-level. Here we use a controlled experimental setting to evaluate short-term stream community responses to salinization, under conditions designed to replicate the duration (72 h) and intensity (up to 5 mS cm −1 ) of salinity pulses common to Mediterranean rivers subjected to mining pollution during runoff events. There was a significant overall effect, but differences between individual treatments and the control were only significant for the highest salinity treatment. The community response to salinization was characterized by a decline in total invertebrate density, taxon richness and diversity, an increase in invertebrate drift and loss of the most sensitive taxa. The findings indicate that short-term salinity increases have a significant impact on the stream invertebrate community, but concentrations of 5 mS cm −1 are needed to produce a significant ecological response. - Highlights: ► Short-term salinization has a significant impact on the aquatic invertebrates. ► A significant short-term ecological response is registered at 5 mS cm −1 . ► Salinization causes a decline in invertebrate density, richness and diversity. ► Biotic quality indices decline with increasing salinity and exposure time. - Short-term salinization in a stream mesocosm caused a significant response in the aquatic invertebrate community and led to declines in biological quality indices.

  18. A stream temperature model for the Peace-Athabasca River basin

    Science.gov (United States)

    Morales-Marin, L. A.; Rokaya, P.; Wheater, H. S.; Lindenschmidt, K. E.

    2017-12-01

    Water temperature plays a fundamental role in water ecosystem functioning. Because it regulates flow energy and metabolic rates in organism productivity over a broad spectrum of space and time scales, water temperature constitutes an important indicator of aquatic ecosystems health. In cold region basins, stream water temperature modelling is also fundamental to predict ice freeze-up and break-up events in order to improve flood management. Multiple model approaches such as linear and multivariable regression methods, neural network and thermal energy budged models have been developed and implemented to simulate stream water temperature. Most of these models have been applied to specific stream reaches and trained using observed data, but very little has been done to simulate water temperature in large catchment river networks. We present the coupling of RBM model, a semi-Lagrangian water temperature model for advection-dominated river system, and MESH, a semi-distributed hydrological model, to simulate stream water temperature in river catchments. The coupled models are implemented in the Peace-Athabasca River basin in order to analyze the variation in stream temperature regimes under changing hydrological and meteorological conditions. Uncertainty of stream temperature simulations is also assessed in order to determine the degree of reliability of the estimates.

  19. A catchment scale evaluation of multiple stressor effects in headwater streams.

    Science.gov (United States)

    Rasmussen, Jes J; McKnight, Ursula S; Loinaz, Maria C; Thomsen, Nanna I; Olsson, Mikael E; Bjerg, Poul L; Binning, Philip J; Kronvang, Brian

    2013-01-01

    Mitigation activities to improve water quality and quantity in streams as well as stream management and restoration efforts are conducted in the European Union aiming to improve the chemical, physical and ecological status of streams. Headwater streams are often characterised by impairment of hydromorphological, chemical, and ecological conditions due to multiple anthropogenic impacts. However, they are generally disregarded as water bodies for mitigation activities in the European Water Framework Directive despite their importance for supporting a higher ecological quality in higher order streams. We studied 11 headwater streams in the Hove catchment in the Copenhagen region. All sites had substantial physical habitat and water quality impairments due to anthropogenic influence (intensive agriculture, urban settlements, contaminated sites and low base-flow due to water abstraction activities in the catchment). We aimed to identify the dominating anthropogenic stressors at the catchment scale causing ecological impairment of benthic macroinvertebrate communities and provide a rank-order of importance that could help in prioritising mitigation activities. We identified numerous chemical and hydromorphological impacts of which several were probably causing major ecological impairments, but we were unable to provide a robust rank-ordering of importance suggesting that targeted mitigation efforts on single anthropogenic stressors in the catchment are unlikely to have substantial effects on the ecological quality in these streams. The SPEcies At Risk (SPEAR) index explained most of the variability in the macroinvertebrate community structure, and notably, SPEAR index scores were often very low (<10% SPEAR abundance). An extensive re-sampling of a subset of the streams provided evidence that especially insecticides were probably essential contributors to the overall ecological impairment of these streams. Our results suggest that headwater streams should be considered in

  20. Environmental quality of the Fosso della Casaccia. stream (Rome, Italy). Evaluation of the ecological impact of wastewaters from the ENEA Research Centre Casaccia

    International Nuclear Information System (INIS)

    Formichetti, P.; Mancini, L.; Morgana, J.G.; Izzo, G.

    2008-01-01

    The study concerned the evaluation of ENEA Research Centre wastewaters effect on the nearby stream Fosso della Casaccia. These pollutants consist of black waters and low radioactivity substances. The effects on stream's ecosystem were evaluated using macro invertebrate community structure, diatom community structure, chemical and microbiological analysis of sediments and water, stream.s ecological functionality level, toxicological indicators. The results showed a general strong pollution degree of the ecosystem that could also reach a higher level due to the low flow of the stream (and consequent low self-depuration effect of the stream itself). Maintenance interventions, if not adequately planned, can also negatively influence the stream ecosystem [it

  1. Metabolic Model-Based Integration of Microbiome Taxonomic and Metabolomic Profiles Elucidates Mechanistic Links between Ecological and Metabolic Variation

    Energy Technology Data Exchange (ETDEWEB)

    Noecker, Cecilia; Eng, Alexander; Srinivasan, Sujatha; Theriot, Casey M.; Young, Vincent B.; Jansson, Janet K.; Fredricks, David N.; Borenstein, Elhanan; Sanchez, Laura M.

    2015-12-22

    ABSTRACT

    Multiple molecular assays now enable high-throughput profiling of the ecology, metabolic capacity, and activity of the human microbiome. However, to date, analyses of such multi-omic data typically focus on statistical associations, often ignoring extensive prior knowledge of the mechanisms linking these various facets of the microbiome. Here, we introduce a comprehensive framework to systematically link variation in metabolomic data with community composition by utilizing taxonomic, genomic, and metabolic information. Specifically, we integrate available and inferred genomic data, metabolic network modeling, and a method for predicting community-wide metabolite turnover to estimate the biosynthetic and degradation potential of a given community. Our framework then compares variation in predicted metabolic potential with variation in measured metabolites’ abundances to evaluate whether community composition can explain observed shifts in the community metabolome, and to identify key taxa and genes contributing to the shifts. Focusing on two independent vaginal microbiome data sets, each pairing 16S community profiling with large-scale metabolomics, we demonstrate that our framework successfully recapitulates observed variation in 37% of metabolites. Well-predicted metabolite variation tends to result from disease-associated metabolism. We further identify several disease-enriched species that contribute significantly to these predictions. Interestingly, our analysis also detects metabolites for which the predicted variation negatively correlates with the measured variation, suggesting environmental control points of community metabolism. Applying this framework to gut microbiome data sets reveals similar trends, including prediction of bile acid metabolite shifts. This framework is an important first step toward a system-level multi-omic integration and an improved mechanistic understanding of the microbiome activity and dynamics in

  2. An investigation of total bacterial communities, culturable antibiotic-resistant bacterial communities and integrons in the river water environments of Taipei city.

    Science.gov (United States)

    Yang, Chu-Wen; Chang, Yi-Tang; Chao, Wei-Liang; Shiung, Iau-Iun; Lin, Han-Sheng; Chen, Hsuan; Ho, Szu-Han; Lu, Min-Jheng; Lee, Pin-Hsuan; Fan, Shao-Ning

    2014-07-30

    The intensive use of antibiotics may accelerate the development of antibiotic-resistant bacteria (ARB). The global geographical distribution of environmental ARB has been indicated by many studies. However, the ARB in the water environments of Taiwan has not been extensively investigated. The objective of this study was to investigate the communities of ARB in Huanghsi Stream, which presents a natural acidic (pH 4) water environment. Waishuanghsi Stream provides a neutral (pH 7) water environment and was thus also monitored to allow comparison. The plate counts of culturable bacteria in eight antibiotics indicate that the numbers of culturable carbenicillin- and vancomycin-resistant bacteria in both Huanghsi and Waishuanghsi Streams are greater than the numbers of culturable bacteria resistant to the other antibiotics tested. Using a 16S rDNA sequencing approach, both the antibiotic-resistant bacterial communities (culture-based) and the total bacterial communities (metagenome-based) in Waishuanghsi Stream exhibit a higher diversity than those in Huanghsi Stream were observed. Of the three classes of integron, only class I integrons were identified in Waishuanghsi Stream. Our results suggest that an acidic (pH 4) water environment may not only affect the community composition of antibiotic-resistant bacteria but also the horizontal gene transfer mediated by integrons. Copyright © 2013 Elsevier B.V. All rights reserved.

  3. Notes on the Vegetation of the Fast-flowing Streams in Peninsular Thailand, the Tropical Mainland of South East Asia

    Directory of Open Access Journals (Sweden)

    Milica Stankovic

    2013-12-01

    Full Text Available The species composition and structure of the plant communities along and in the fast-flowing streams on different bedrock types of the tropical mainland South-East Asia were investigated. The study was carried out in Peninsular Thailand, on the Nakhon Si Thammarat mountain range. A total number of 14 plots were placed within the five selected streams where vascular plants species had been collected, starting from November 2010 until July 2012. The estimation of the species was calculated by computer program EstimateS, and in order to distinguish plant communities, a cluster analysis was performed. A total number of 109 species of vascular plants has been recorded, with 59 species in the granite and 60 in the calcareous bedrock streams. There were four types of plant communities that had were categorized; of which three types occurred in the granitic bedrock streams and the other could be seen exclusively in the calcareous bedrock. It is convinced that the types of the bedrock as well as the topographic features of the streams might have major impact on the characterization of the plant communities.

  4. Design and methods of the Southeast Stream Quality Assessment (SESQA), 2014

    Science.gov (United States)

    Journey, Celeste A.; Van Metre, Peter C.; Bell, Amanda H.; Button, Daniel T.; Garrett, Jessica D.; Nakagaki, Naomi; Qi, Sharon L.; Bradley, Paul M.

    2015-07-15

    During 2014, the U.S. Geological Survey (USGS) National Water-Quality Assessment Program (NAWQA) assessed stream quality across the Piedmont and southern Appalachian Mountain regions of the southeastern United States. This Southeast Stream Quality Assessment (SESQA) simultaneously characterized watershed and stream-reach water-quality stressors along with instream biological conditions, in order to better understand regional stressor-effects relations. The goal of SESQA is to provide communities and policymakers with information about those human and environmental factors that have the greatest impact on stream quality across the region. The SESQA design focused on hydrologic alteration and urbanization because of their importance as ecological stressors of particular concern to Southeast region resource managers.

  5. SPATIO-TEMPORAL VARIATIONS IN MACROINVERTEBRATE ASSEMBLAGES OF NEW CALEDONIAN STREAMS.

    Directory of Open Access Journals (Sweden)

    MARY N. J.

    2002-01-01

    Full Text Available Forty-one sites located on 14 New Caledonian streams were surveyed four times between October 1996 and October 1997 in order to examine the spatial and temporal changes in the structure of the benthic macroinvertebrate communities. About 250 000 invertebrates representing 167 taxa were collected in the streams. Seventy-five percent of identified taxa and 67% of individuals were insects. Major spatial and temporal changes in the composition of the fauna were detected by multivariate analyses (ordination and classification. Overall, the number of individuals was significantly higher in the dry season (October than in the wetter seasons (January and June. However, a low temporal variability was detected in the structure of benthic communities during the sampling period. A cluster analysis based on taxonomic composition separated five groups of sites in relation with rock type, land use, and geographic characteristics. Several metrics (total invertebrate density, taxon richness, relative abundance of major invertebrate groups, diversity indices were used to characterize each group of sites. Forested streams, where the highest specific diversity occurred, represented the most speciose habitat for benthic fauna. A less rich and abundant fauna occurred in streams draining ultramafic rocks probably because of their low content in food resources and organic matter.

  6. Investigating Research Streams of Conjoint Analysis: A Bibliometric Study

    Directory of Open Access Journals (Sweden)

    Thorsten Teichert

    2010-05-01

    Full Text Available Conjoint analysis (CA is one of the most important methods for preference elicitation. In this paper we investigate the intellectual structure within the conjoint analytical research community. Analyses based on single papers provide a method-based overview of streams of conjoint research. By using novel bibliometric techniques in this field we complement findings of existing reviews. We use co-citation and factor analysis of the most cited articles in SSCI to identify the most important articles and research streams. Seven research streams are revealed which are visualized by means of multidimensional scaling. Tables and graphics reveal the disciplinary affiliations of contributors to CA, the special structure within the classes as well as links between them.

  7. Complex mixtures of dissolved pesticides show potential aquatic toxicity in a synoptic study of Midwestern U.S. streams

    Science.gov (United States)

    Nowell, Lisa H.; Moran, Patrick W.; Schmidt, Travis S.; Norman, Julia E.; Nakagaki, Naomi; Shoda, Megan E.; Mahler, Barbara J.; Van Metre, Peter C.; Stone, Wesley W.; Sandstrom, Mark W.; Hladik, Michelle L.

    2018-01-01

    Aquatic organisms in streams are exposed to pesticide mixtures that vary in composition over time in response to changes in flow conditions, pesticide inputs to the stream, and pesticide fate and degradation within the stream. To characterize mixtures of dissolved-phase pesticides and degradates in Midwestern streams, a synoptic study was conducted at 100 streams during May–August 2013. In weekly water samples, 94 pesticides and 89 degradates were detected, with a median of 25 compounds detected per sample and 54 detected per site. In a screening-level assessment using aquatic-life benchmarks and the Pesticide Toxicity Index (PTI), potential effects on fish were unlikely in most streams. For invertebrates, potential chronic toxicity was predicted in 53% of streams, punctuated in 12% of streams by acutely toxic exposures. For aquatic plants, acute but likely reversible effects on biomass were predicted in 75% of streams, with potential longer-term effects on plant communities in 9% of streams. Relatively few pesticides in water—atrazine, acetochlor, metolachlor, imidacloprid, fipronil, organophosphate insecticides, and carbendazim—were predicted to be major contributors to potential toxicity. Agricultural streams had the highest potential for effects on plants, especially in May–June, corresponding to high spring-flush herbicide concentrations. Urban streams had higher detection frequencies and concentrations of insecticides and most fungicides than in agricultural streams, and higher potential for invertebrate toxicity, which peaked during July–August. Toxicity-screening predictions for invertebrates were supported by quantile regressions showing significant associations for the Benthic Invertebrate-PTI and imidacloprid concentrations with invertebrate community metrics for MSQA streams, and by mesocosm toxicity testing with imidacloprid showing effects on invertebrate communities at environmentally relevant concentrations. This study documents the most

  8. Learning From Short Text Streams With Topic Drifts.

    Science.gov (United States)

    Li, Peipei; He, Lu; Wang, Haiyan; Hu, Xuegang; Zhang, Yuhong; Li, Lei; Wu, Xindong

    2017-09-18

    Short text streams such as search snippets and micro blogs have been popular on the Web with the emergence of social media. Unlike traditional normal text streams, these data present the characteristics of short length, weak signal, high volume, high velocity, topic drift, etc. Short text stream classification is hence a very challenging and significant task. However, this challenge has received little attention from the research community. Therefore, a new feature extension approach is proposed for short text stream classification with the help of a large-scale semantic network obtained from a Web corpus. It is built on an incremental ensemble classification model for efficiency. First, more semantic contexts based on the senses of terms in short texts are introduced to make up of the data sparsity using the open semantic network, in which all terms are disambiguated by their semantics to reduce the noise impact. Second, a concept cluster-based topic drifting detection method is proposed to effectively track hidden topic drifts. Finally, extensive studies demonstrate that as compared to several well-known concept drifting detection methods in data stream, our approach can detect topic drifts effectively, and it enables handling short text streams effectively while maintaining the efficiency as compared to several state-of-the-art short text classification approaches.

  9. Modeled hydrologic metrics show links between hydrology and the functional composition of stream assemblages.

    Science.gov (United States)

    Patrick, Christopher J; Yuan, Lester L

    2017-07-01

    Flow alteration is widespread in streams, but current understanding of the effects of differences in flow characteristics on stream biological communities is incomplete. We tested hypotheses about the effect of variation in hydrology on stream communities by using generalized additive models to relate watershed information to the values of different flow metrics at gauged sites. Flow models accounted for 54-80% of the spatial variation in flow metric values among gauged sites. We then used these models to predict flow metrics in 842 ungauged stream sites in the mid-Atlantic United States that were sampled for fish, macroinvertebrates, and environmental covariates. Fish and macroinvertebrate assemblages were characterized in terms of a suite of metrics that quantified aspects of community composition, diversity, and functional traits that were expected to be associated with differences in flow characteristics. We related modeled flow metrics to biological metrics in a series of stressor-response models. Our analyses identified both drying and base flow instability as explaining 30-50% of the observed variability in fish and invertebrate community composition. Variations in community composition were related to variations in the prevalence of dispersal traits in invertebrates and trophic guilds in fish. The results demonstrate that we can use statistical models to predict hydrologic conditions at bioassessment sites, which, in turn, we can use to estimate relationships between flow conditions and biological characteristics. This analysis provides an approach to quantify the effects of spatial variation in flow metrics using readily available biomonitoring data. © 2017 by the Ecological Society of America.

  10. Association between television viewing and the risk of metabolic syndrome in a community-based population

    Directory of Open Access Journals (Sweden)

    Liu Chiu-Shong

    2008-06-01

    Full Text Available Abstract Background As a result of metabolic syndrome becoming an important issue during recent decades, many studies have explored the risk factors contributing to its development. However, less attention has been paid to the risk associated with sedentary behavior, especially television viewing. This study examined the association between television viewing time and the risk of having metabolic syndrome in a population of Taiwanese subjects. Methods This community-based cross-sectional study included 2,353 subjects (1,144 men and 1,209 women aged 40 and over from October, 2004 to September, 2005. Information about the time spent watching TV was obtained using a self-administered questionnaire. The definition of metabolic syndrome was according to the Third Report of the National Cholesterol Education Program's Adult Treatment Panel modified for Asians. Results Compared to subjects who viewed TV 20 hr/week had a 1.50-fold (95% confidence intervals (CI: 1.10, 2.03 risk for men and a 1.93-fold (95% CI: 1.37, 2.71 risk for women of having metabolic syndrome, after adjusting for physical activity and other covariates. Stratifying by the three categories of total activity levels, TV viewing time > 20 hr/week was found to still hold a significant risk for having metabolic syndrome in the lowest of the three categories of total activity level for men and in all three categories of total activity level for women. Conclusion The findings suggest that TV viewing is an independent risk factor associated with metabolic syndrome in Taiwanese people.

  11. Sulfur metabolizing microbes dominate microbial communities in Andesite-hosted shallow-sea hydrothermal systems.

    Directory of Open Access Journals (Sweden)

    Yao Zhang

    Full Text Available To determine microbial community composition, community spatial structure and possible key microbial processes in the shallow-sea hydrothermal vent systems off NE Taiwan's coast, we examined the bacterial and archaeal communities of four samples collected from the water column extending over a redoxocline gradient of a yellow and four from a white hydrothermal vent. Ribosomal tag pyrosequencing based on DNA and RNA showed statistically significant differences between the bacterial and archaeal communities of the different hydrothermal plumes. The bacterial and archaeal communities from the white hydrothermal plume were dominated by sulfur-reducing Nautilia and Thermococcus, whereas the yellow hydrothermal plume and the surface water were dominated by sulfide-oxidizing Thiomicrospira and Euryarchaeota Marine Group II, respectively. Canonical correspondence analyses indicate that methane (CH(4 concentration was the only statistically significant variable that explains all community cluster patterns. However, the results of pyrosequencing showed an essential absence of methanogens and methanotrophs at the two vent fields, suggesting that CH(4 was less tied to microbial processes in this shallow-sea hydrothermal system. We speculated that mixing between hydrothermal fluids and the sea or meteoric water leads to distinctly different CH(4 concentrations and redox niches between the yellow and white vents, consequently influencing the distribution patterns of the free-living Bacteria and Archaea. We concluded that sulfur-reducing and sulfide-oxidizing chemolithoautotrophs accounted for most of the primary biomass synthesis and that microbial sulfur metabolism fueled microbial energy flow and element cycling in the shallow hydrothermal systems off the coast of NE Taiwan.

  12. Sulfur metabolizing microbes dominate microbial communities in Andesite-hosted shallow-sea hydrothermal systems.

    Science.gov (United States)

    Zhang, Yao; Zhao, Zihao; Chen, Chen-Tung Arthur; Tang, Kai; Su, Jianqiang; Jiao, Nianzhi

    2012-01-01

    To determine microbial community composition, community spatial structure and possible key microbial processes in the shallow-sea hydrothermal vent systems off NE Taiwan's coast, we examined the bacterial and archaeal communities of four samples collected from the water column extending over a redoxocline gradient of a yellow and four from a white hydrothermal vent. Ribosomal tag pyrosequencing based on DNA and RNA showed statistically significant differences between the bacterial and archaeal communities of the different hydrothermal plumes. The bacterial and archaeal communities from the white hydrothermal plume were dominated by sulfur-reducing Nautilia and Thermococcus, whereas the yellow hydrothermal plume and the surface water were dominated by sulfide-oxidizing Thiomicrospira and Euryarchaeota Marine Group II, respectively. Canonical correspondence analyses indicate that methane (CH(4)) concentration was the only statistically significant variable that explains all community cluster patterns. However, the results of pyrosequencing showed an essential absence of methanogens and methanotrophs at the two vent fields, suggesting that CH(4) was less tied to microbial processes in this shallow-sea hydrothermal system. We speculated that mixing between hydrothermal fluids and the sea or meteoric water leads to distinctly different CH(4) concentrations and redox niches between the yellow and white vents, consequently influencing the distribution patterns of the free-living Bacteria and Archaea. We concluded that sulfur-reducing and sulfide-oxidizing chemolithoautotrophs accounted for most of the primary biomass synthesis and that microbial sulfur metabolism fueled microbial energy flow and element cycling in the shallow hydrothermal systems off the coast of NE Taiwan.

  13. Global pressures, specific responses: effects of nutrient enrichment in streams from different biomes

    International Nuclear Information System (INIS)

    Artigas, Joan; García-Berthou, Emili; Gómez, Nora; Romaní, Anna M; Sabater, Sergi; Bauer, Delia E; Cochero, Joaquín; Cortelezzi, Agustina; Rodrigues-Capítulo, Alberto; Castro, Maria I; Donato, John C; Colautti, Darío C; Elosegi, Arturo; Feijoó, Claudia; Giorgi, Adonis; Leggieri, Leonardo; Muñoz, Isabel

    2013-01-01

    We assessed the effects of nutrient enrichment on three stream ecosystems running through distinct biomes (Mediterranean, Pampean and Andean). We increased the concentrations of N and P in the stream water 1.6–4-fold following a before–after control–impact paired series (BACIPS) design in each stream, and evaluated changes in the biomass of bacteria, primary producers, invertebrates and fish in the enriched (E) versus control (C) reaches after nutrient addition through a predictive-BACIPS approach. The treatment produced variable biomass responses (2–77% of explained variance) among biological communities and streams. The greatest biomass response was observed for algae in the Andean stream (77% of the variance), although fish also showed important biomass responses (about 9–48%). The strongest biomass response to enrichment (77% in all biological compartments) was found in the Andean stream. The magnitude and seasonality of biomass responses to enrichment were highly site specific, often depending on the basal nutrient concentration and on windows of ecological opportunity (periods when environmental constraints other than nutrients do not limit biomass growth). The Pampean stream, with high basal nutrient concentrations, showed a weak response to enrichment (except for invertebrates), whereas the greater responses of Andean stream communities were presumably favored by wider windows of ecological opportunity in comparison to those from the Mediterranean stream. Despite variation among sites, enrichment globally stimulated the algal-based food webs (algae and invertebrate grazers) but not the detritus-based food webs (bacteria and invertebrate shredders). This study shows that nutrient enrichment tends to globally enhance the biomass of stream biological assemblages, but that its magnitude and extent within the food web are complex and are strongly determined by environmental factors and ecosystem structure. (letter)

  14. Lower Red River Meadow Stream Restoration Project

    International Nuclear Information System (INIS)

    1996-05-01

    As part of a continuing effort to restore anadromous fish populations in the South Fork Clearwater River basin of Idaho, Bonneville Power Administration (BPA) proposes to fund the Lower Red River Meadow Restoration Project (Project). The Project is a cooperative effort with the Idaho Soil and Water Conservation District, Nez Perce National Forest, Idaho Department of Fish and Game (IDFG), and the Nez Perce Tribe of Idaho. The proposed action would allow the sponsors to perform stream bank stabilization, aquatic and riparian habitat improvement activities on IDFG's Red River Management Area and to secure long-term conservation contracts or agreements for conducting streambank and habitat improvement activities with participating private landowners located in the Idaho County, Idaho, study area. This preliminary Environmental Assessment (EA) examines the potential environmental effects of stabilizing the stream channel, restoring juvenile fish rearing habitat and reestablishing a riparian shrub community along the stream

  15. Methane-metabolizing microbial communities in sediments of the Haima cold seep area, northwest slope of the South China Sea.

    Science.gov (United States)

    Niu, Mingyang; Fan, Xibei; Zhuang, Guangchao; Liang, Qianyong; Wang, Fengping

    2017-09-01

    Cold seeps are widespread chemosynthetic ecosystems in the deep-sea environment, and cold seep microbial communities of the South China Sea are poorly constrained. Here we report on the archaeal communities, particularly those involved in methane metabolization, in sediments of a newly discovered cold seep (named 'Haima') on the northwest slope of the South China Sea. Archaeal diversity, abundance and distribution were investigated in two piston cores collected from a seep area (QDN-14B) and a non-seep control site (QDN-31B). Geochemical investigation of the QDN-14B core identified an estimated sulfate-methane transition zone (Estimated SMTZ) at 300-400 cm below sea floor (cmbsf), where a high abundance of anaerobic methane-oxidizing archaea (ANME) occurred, as revealed by analysis of the 16S rRNA gene and the gene (mcrA) encoding the α-subunit of the key enzyme methyl-coenzyme M reductase. ANME-2a/b was predominant in the upper and middle layers of the estimated SMTZ, whereas ANME-1b outcompeted ANME-2 in the sulfate-depleted bottom layers of the estimated SMTZ and the methanogenic zone. Fine-scale phylogenetic analysis further divided the ANME-1b group into three subgroups with different distribution patterns: ANME-1bI, ANME-1bII and ANME-1bIII. Multivariate analyses indicated that dissolved inorganic carbon and sulfate may be important factors controlling the composition of the methane-metabolizing community. Our study on ANME niche separation and interactions with other archaeal groups improves our understanding of the metabolic diversity and flexibility of ANME, and the findings further suggest that ANME subgroups may have evolved diversified/specified metabolic capabilities other than syntrophic anaerobic oxidation of methane coupled with sulfate reduction in marine sediments. © FEMS 2017. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

  16. Seasonality, water quality trends and biological responses in four streams in the Cairngorm Mountains, Scotland

    Directory of Open Access Journals (Sweden)

    C. Soulsby

    2001-01-01

    Full Text Available The chemical composition and invertebrate communities found in four streams in the Cairngorms, Scotland, were monitored between 1985-1997. Stream waters were mildly acidic (mean pH ca. 6.5, with low alkalinity (mean acid neutralising capacity varying from 35-117 meq l-1 and low ionic strength. Subtle differences in the chemistry of each stream were reflected in their invertebrate faunas. Strong seasonality in water chemistry occurred, with the most acid, low alkalinity waters observed during the winter and early spring. This was particularly marked during snowmelt between January and April. In contrast, summer flows were usually groundwater dominated and characterised by higher alkalinity and higher concentrations of most other weathering-derived solutes. Seasonality was also clear in the invertebrate data, with Canonical Correspondence Analysis (CCA separating seasonal samples along axes related to water temperature and discharge characteristics. Inter-annual hydrological and chemical differences were marked, particularly with respect to the winter period. Invertebrate communities found in each of the streams also varied from year to year, with spring communities significantly more variable (PHydrochemical trends over the study period were analysed using a seasonal Kendall test, LOcally WEighted Scatterplot Smoothing (LOWESS and graphical techniques. These indicated that a reduction in sulphate concentrations in stream water is occurring, consistent with declining levels of atmospheric deposition. This may be matched by increases in pH and declining calcium concentrations, though available evidence is inconclusive. Other parameters, such as chloride, total organic carbon and zinc, reveal somewhat random patterns, probably reflecting irregular variations in climatic factors and/or atmospheric deposition. Previous studies have shown that the stream invertebrate communities have remained stable over this period (i.e. no significant linear trends

  17. Anthropogenic and natural sources of acidity and metals and their influence on the structure of stream food webs

    International Nuclear Information System (INIS)

    Hogsden, Kristy L.; Harding, Jon S.

    2012-01-01

    We compared food web structure in 20 streams with either anthropogenic or natural sources of acidity and metals or circumneutral water chemistry in New Zealand. Community and diet analysis indicated that mining streams receiving anthropogenic inputs of acidic and metal-rich drainage had much simpler food webs (fewer species, shorter food chains, less links) than those in naturally acidic, naturally high metal, and circumneutral streams. Food webs of naturally high metal streams were structurally similar to those in mining streams, lacking fish predators and having few species. Whereas, webs in naturally acidic streams differed very little from those in circumneutral streams due to strong similarities in community composition and diets of secondary and top consumers. The combined negative effects of acidity and metals on stream food webs are clear. However, elevated metal concentrations, regardless of source, appear to play a more important role than acidity in driving food web structure. - Highlights: ► Food webs in acid mine drainage impacted streams are small and extremely simplified. ► Conductivity explained differences in food web properties between streams. ► Number of links and web size accounted for much dissimilarity between food webs. ► Food web structure was comparable in naturally acidic and circumneutral streams. - Food web structure differs in streams with anthropogenic and natural sources of acidity and metals.

  18. Towards Cache-Enabled, Order-Aware, Ontology-Based Stream Reasoning Framework

    Energy Technology Data Exchange (ETDEWEB)

    Yan, Rui; Praggastis, Brenda L.; Smith, William P.; McGuinness, Deborah L.

    2016-08-16

    While streaming data have become increasingly more popular in business and research communities, semantic models and processing software for streaming data have not kept pace. Traditional semantic solutions have not addressed transient data streams. Semantic web languages (e.g., RDF, OWL) have typically addressed static data settings and linked data approaches have predominantly addressed static or growing data repositories. Streaming data settings have some fundamental differences; in particular, data are consumed on the fly and data may expire. Stream reasoning, a combination of stream processing and semantic reasoning, has emerged with the vision of providing "smart" processing of streaming data. C-SPARQL is a prominent stream reasoning system that handles semantic (RDF) data streams. Many stream reasoning systems including C-SPARQL use a sliding window and use data arrival time to evict data. For data streams that include expiration times, a simple arrival time scheme is inadequate if the window size does not match the expiration period. In this paper, we propose a cache-enabled, order-aware, ontology-based stream reasoning framework. This framework consumes RDF streams with expiration timestamps assigned by the streaming source. Our framework utilizes both arrival and expiration timestamps in its cache eviction policies. In addition, we introduce the notion of "semantic importance" which aims to address the relevance of data to the expected reasoning, thus enabling the eviction algorithms to be more context- and reasoning-aware when choosing what data to maintain for question answering. We evaluate this framework by implementing three different prototypes and utilizing five metrics. The trade-offs of deploying the proposed framework are also discussed.

  19. Diatom diversity in chronically versus episodically acidified adirondack streams

    Science.gov (United States)

    Passy, S.I.; Ciugulea, I.; Lawrence, G.B.

    2006-01-01

    The relationship between algal species richness and diversity, and pH is controversial. Furthermore, it is still unknown how episodic stream acidification following atmospheric deposition affects species richness and diversity. Here we analyzed water chemistry and diatom epiphyton dynamics and showed their contrasting behavior in chronically vs. episodically acidic streams in the Adirondack region. Species richness and diversity were significantly higher in the chronically acidic brown water stream, where organic acidity was significantly higher and the ratio of inorganic to organic monomeric aluminum significantly lower. Conversely, in the episodically acidic clear water stream, the inorganic acidity and pH were significantly higher and the diatom communities were very species-poor. This suggests that episodic acidification in the Adirondacks may be more stressful for stream biota than chronic acidity. Strong negative linear relationships between species diversity, Eunotia exigua, and dissolved organic carbon against pH were revealed after the influence of non-linear temporal trends was partialled out using a novel way of temporal modeling. ?? 2006 WILEY-VCH Verlag GmbH & Co. KGaA.

  20. Comparison of Metabolic and Hormonal Profiles of Women With and Without Premenstrual Syndrome: A Community Based Cross-Sectional Study.

    Science.gov (United States)

    Hashemi, Somayeh; Ramezani Tehrani, Fahimeh; Mohammadi, Nader; Rostami Dovom, Marzieh; Torkestani, Farahnaz; Simbar, Masumeh; Azizi, Fereidoun

    2016-04-01

    Premenstrual syndrome (PMS) is reported by up to 85% of women of reproductive age. Although several studies have focused on the hormone and lipid profiles of females with PMS, the results are controversial. This study was designed to investigate the association of hormonal and metabolic factors with PMS among Iranian women of reproductive age. This study was a community based cross-sectional study. Anthropometric measurements, biochemical parameters, and metabolic disorders were compared between 354 women with PMS and 302 healthy controls selected from among 1126 women of reproductive age who participated in the Iranian PCOS prevalence study. P values high density lipoprotein (HDL) and 17-hydroxyprogesterone (17-OHP) levels were significantly less than they were in women without the syndrome (P rise in the probability of having metabolic syndrome (P = 0.033). There was a significant association between PMS scores and the prevalence of metabolic syndrome. Further studies are needed to confirm and validate the relationships between lipid profile abnormalities and metabolic disorders with PMS.

  1. Permafrost thaw and intense thermokarst activity decreases abundance of stream benthic macroinvertebrates.

    Science.gov (United States)

    Chin, Krista S; Lento, Jennifer; Culp, Joseph M; Lacelle, Denis; Kokelj, Steven V

    2016-08-01

    Intensification of permafrost thaw has increased the frequency and magnitude of large permafrost slope disturbances (mega slumps) in glaciated terrain of northwestern Canada. Individual thermokarst disturbances up to 40 ha in area have made large volumes of previously frozen sediments available for leaching and transport to adjacent streams, significantly increasing sediment and solute loads in these systems. To test the effects of this climate-sensitive disturbance regime on the ecology of Arctic streams, we explored the relationship between physical and chemical variables and benthic macroinvertebrate communities in disturbed and undisturbed stream reaches in the Peel Plateau, Northwest Territories, Canada. Highly disturbed and undisturbed stream reaches differed with respect to taxonomic composition and invertebrate abundance. Minimally disturbed reaches were not differentiated by these variables but rather were distributed along a disturbance gradient between highly disturbed and undisturbed sites. In particular, there was evidence of a strong negative relationship between macroinvertebrate abundance and total suspended solids, and a positive relationship between abundance and the distance from the disturbance. Increases in both sediments and nutrients appear to be the proximate cause of community differences in highly disturbed streams. Declines in macroinvertebrate abundance in response to slump activity have implications for the food webs of these systems, potentially leading to negative impacts on higher trophic levels, such as fish. Furthermore, the disturbance impacts on stream health can be expected to intensify as climate change increases the frequency and magnitude of thermokarst. © 2016 John Wiley & Sons Ltd.

  2. Microbial Communities and Their Predicted Metabolic Functions in Growth Laminae of a Unique Large Conical Mat from Lake Untersee, East Antarctica

    Directory of Open Access Journals (Sweden)

    Hyunmin Koo

    2017-08-01

    Full Text Available In this study, we report the distribution of microbial taxa and their predicted metabolic functions observed in the top (U1, middle (U2, and inner (U3 decadal growth laminae of a unique large conical microbial mat from perennially ice-covered Lake Untersee of East Antarctica, using NextGen sequencing of the 16S rRNA gene and bioinformatics tools. The results showed that the U1 lamina was dominated by cyanobacteria, specifically Phormidium sp., Leptolyngbya sp., and Pseudanabaena sp. The U2 and U3 laminae had high abundances of Actinobacteria, Verrucomicrobia, Proteobacteria, and Bacteroidetes. Closely related taxa within each abundant bacterial taxon found in each lamina were further differentiated at the highest taxonomic resolution using the oligotyping method. PICRUSt analysis, which determines predicted KEGG functional categories from the gene contents and abundances among microbial communities, revealed a high number of sequences belonging to carbon fixation, energy metabolism, cyanophycin, chlorophyll, and photosynthesis proteins in the U1 lamina. The functional predictions of the microbial communities in U2 and U3 represented signal transduction, membrane transport, zinc transport and amino acid-, carbohydrate-, and arsenic- metabolisms. The Nearest Sequenced Taxon Index (NSTI values processed through PICRUSt were 0.10, 0.13, and 0.11 for U1, U2, and U3 laminae, respectively. These values indicated a close correspondence with the reference microbial genome database, implying high confidence in the predicted metabolic functions of the microbial communities in each lamina. The distribution of microbial taxa observed in each lamina and their predicted metabolic functions provides additional insight into the complex microbial ecosystem at Lake Untersee, and lays the foundation for studies that will enhance our understanding of the mechanisms responsible for the formation of these unique mat structures and their evolutionary significance.

  3. Assessment of water chemistry, habitat, and benthic macroinvertebrates at selected stream-quality monitoring sites in Chester County, Pennsylvania, 1998-2000

    Science.gov (United States)

    Reif, Andrew G.

    2004-01-01

    Biological, chemical, and habitat data have been collected from a network of sites in Chester County, Pa., from 1970 to 2003 to assess stream quality. Forty sites in 6 major stream basins were sampled between 1998 and 2000. Biological data were used to determine levels of impairment in the benthic-macroinvertebrate community in Chester County streams and relate the impairment, in conjunction with chemical and habitat data, to overall stream quality. Biological data consisted of benthic-macroinvertebrate samples that were collected annually in the fall. Water-chemistry samples were collected and instream habitat was assessed in support of the biological sampling.Most sites in the network were designated as nonimpacted or slightly impacted by human activities or extreme climatic conditions on the basis of biological-metric analysis of benthic-macroinvertebrate data. Impacted sites were affected by factors, such as nutrient enrichment, erosion and sedimentation, point discharges, and droughts and floods. Streams in the Schuylkill River, Delaware River, and East Branch Brandywine Creek Basins in Chester County generally had low nutrient concentrations, except in areas affected by wastewater-treatment discharges, and stream habitat that was affected by erosion. Streams in the West Branch Brandywine, Christina, Big Elk, and Octoraro Creek Basins in Chester County generally had elevated nutrient concentrations and streambottom habitat that was affected by sediment deposition.Macroinvertebrate communities identified in samples from French Creek, Pigeon Creek (Schuylkill River Basin), and East Branch Brandywine Creek at Glenmoore consistently indicate good stream conditions and were the best conditions measured in the network. Macroinvertebrate communities identified in samples from Trout Creek (site 61), West Branch Red Clay Creek (site 55) (Christina River Basin), and Valley Creek near Atglen (site 34) (Octoraro Creek Basin) indicated fair to poor stream conditions and

  4. Mineralogical controls on surface colonization by sulfur-metabolizing microbial communities

    Science.gov (United States)

    Jones, A. A.; Bennett, P.

    2012-12-01

    When characterizing microbial diversity and the microbial ecosystem of the shallow subsurface the mineral matrix is generally assumed to be homogenous and unreactive. We report here experimental evidence that microorganisms colonize rock surfaces according to the rock's chemistry and the organism's metabolic requirements and tolerances. We investigated this phenomenon using laboratory biofilm reactors with both a pure culture of sulfur-oxidizing Thiothrix unzii and a mixed environmental sulfur-metabolizing community from Lower Kane, Cave, WY, USA. Reactors contained rock and mineral chips (calcite, albite, microcline, quartz, chert, Madison Limestone (ML), Madison Dolostone (MD), and basalt) amended with one of the two inoculants. Biomass of attached microorganisms on each mineral surface was quantified. The 16S rRNA of attached microbial communities were compared using Roche FLX and Titanium 454 next generation pyrosequencing. A primary controlling factor on taxonomy of attached microorganisms in both pure and mixed culture experiments was mineral buffering capacity. In mixed culture experiments acid-buffering carbonates were preferentially colonized by neutrophilic sulfur-oxidizing microorganisms (~18% to ~27% of microorganisms), while acidophilic sulfur-oxidizing microorganisms colonized non-buffering quartz exclusively (~46% of microorganisms). The nutrient content of the rock was a controlling factor on biomass accumulation, with neutrophilic organisms selecting between carbonate surfaces of equivalent buffer capacities according to the availability of phosphate. Dry biomass on ML was 17.8 ± 2.3 mg/cm2 and MD was 20.6 ± 6.8 mg/cm2; while nutrient poor calcite accumulated 2.4 ± 0.3 mg/cm2. Biomass accumulation was minimal on non-buffering nutrient-limited surfaces. These factors are countered by the competitive exclusion of some populations. A pure culture of T. unzii preferentially colonizes carbonates while a very closely related Thiothrix spp is excluded

  5. Metabolic profiles of prokaryotic and eukaryotic communities in deep-sea sponge Neamphius huxleyi indicated by metagenomics

    Science.gov (United States)

    Li, Zhi-Yong; Wang, Yue-Zhu; He, Li-Ming; Zheng, Hua-Jun

    2014-01-01

    The whole metabolism of a sponge holobiont and the respective contributions of prokaryotic and eukaryotic symbionts and their associations with the sponge host remain largely unclear. Meanwhile, compared with shallow water sponges, deep-sea sponges are rarely understood. Here we report the metagenomic exploration of deep-sea sponge Neamphius huxleyi at the whole community level. Metagenomic data showed phylogenetically diverse prokaryotes and eukaryotes in Neamphius huxleyi. MEGAN and gene enrichment analyses indicated different metabolic potentials of prokaryotic symbionts from eukaryotic symbionts, especially in nitrogen and carbon metabolisms, and their molecular interactions with the sponge host. These results supported the hypothesis that prokaryotic and eukaryotic symbionts have different ecological roles and relationships with sponge host. Moreover, vigorous denitrification, and CO2 fixation by chemoautotrophic prokaryotes were suggested for this deep-sea sponge. The study provided novel insights into the respective potentials of prokaryotic and eukaryotic symbionts and their associations with deep-sea sponge Neamphius huxleyi. PMID:24463735

  6. Metabolic profiles of prokaryotic and eukaryotic communities in deep-sea sponge Lamellomorpha sp. indicated by metagenomics

    Science.gov (United States)

    Li, Zhi-Yong; Wang, Yue-Zhu; He, Li-Ming; Zheng, Hua-Jun

    2014-01-01

    The whole metabolism of a sponge holobiont and the respective contributions of prokaryotic and eukaryotic symbionts and their associations with the sponge host remain largely unclear. Meanwhile, compared with shallow water sponges, deep-sea sponges are rarely understood. Here we report the metagenomic exploration of deep-sea sponge Lamellomorpha sp. at the whole community level. Metagenomic data showed phylogenetically diverse prokaryotes and eukaryotes in Lamellomorpha sp.. MEGAN and gene enrichment analyses indicated different metabolic potentials of prokaryotic symbionts from eukaryotic symbionts, especially in nitrogen and carbon metabolisms, and their molecular interactions with the sponge host. These results supported the hypothesis that prokaryotic and eukaryotic symbionts have different ecological roles and relationships with sponge host. Moreover, vigorous denitrification, and CO2 fixation by chemoautotrophic prokaryotes were suggested for this deep-sea sponge. The study provided novel insights into the respective potentials of prokaryotic and eukaryotic symbionts and their associations with deep-sea sponge Lamellomorpha sp..

  7. Importance of neutral processes varies in time and space: Evidence from dryland stream ecosystems.

    Directory of Open Access Journals (Sweden)

    Xiaoli Dong

    Full Text Available Many ecosystems experience strong temporal variability in environmental conditions; yet, a clear picture of how niche and neutral processes operate to determine community assembly in temporally variable systems remains elusive. In this study, we constructed neutral metacommunity models to assess the relative importance of neutral processes in a spatially and temporally variable ecosystem. We analyzed macroinvertebrate community data spanning multiple seasons and years from 20 sites in a Sonoran Desert river network in Arizona. The model goodness-of-fit was used to infer the importance of neutral processes. Averaging over eight stream flow conditions across three years, we found that neutral processes were more important in perennial streams than in non-perennial streams (intermittent and ephemeral streams. Averaging across perennial and non-perennial streams, we found that neutral processes were more important during very high flow and in low flow periods; whereas, at very low flows, the relative importance of neutral processes varied greatly. These findings were robust to the choice of model parameter values. Our study suggested that the net effect of disturbance on the relative importance of niche and neutral processes in community assembly varies non-monotonically with the severity of disturbance. In contrast to the prevailing view that disturbance promotes niche processes, we found that neutral processes could become more important when the severity of disturbance is beyond a certain threshold such that all organisms are adversely affected regardless of their biological traits and strategies.

  8. Methanotrophy in surface sediments of streams

    Science.gov (United States)

    Bagnoud, Alexandre; Pramateftaki, Paraskevi; Peter, Hannes; Battin, Tom

    2017-04-01

    Because streams are often found to be supersaturated in methane (CH4), they are considered as atmospheric sources of this greenhouse gas. However, little is known about the processes driving CH4 cycling in these environments, i.e. production, consumption and fluxes. CH4 is thought to be produced in deeper anoxic sediments, before it migrates up to reach the oxic stream water, where it can be oxidized by methanotrophs. In order to gain insights into this process, we investigated 14 different streams across Switzerland. We characterized the chemistry of surface and sediment waters by measuring dissolved chemical profiles. We also sampled surface sediments and determined methanotrophic rates with laboratory incubations and Michaelis-Menten modeling. Interestingly, rates were strongly correlated with the CH4 concentrations in stream waters, rather than in sediment waters. This indicates that methantrophic populations feed on CH4 from the surface streamwater, even though CH4 concentrations are higher in the sediment waters. Methanotrophy rates were also correlated with Crenothrix counts (based on 16S rRNA sequencing), a strict methanotroph, while this latter was correlated with pmoA counts (based on quantitative PCR), a gene involved in methanotrophy. These results show that Crenothrix genera are the most active methanotrophs in surface sediments of streams, and can represent more than 2% of microbial communities. Remarkably, the dominating Crenothrix species was detected in all 14 samples. This work allows the assessment of in situ methanotrophic rates, of the environmental parameters driving this process, and of the microbial populations carrying it out, and thus brings useful insights about carbon cycling in streams.

  9. Metabolic routes along digestive system of licorice: multicomponent sequential metabolism method in rat.

    Science.gov (United States)

    Zhang, Lei; Zhao, Haiyu; Liu, Yang; Dong, Honghuan; Lv, Beiran; Fang, Min; Zhao, Huihui

    2016-06-01

    This study was conducted to establish the multicomponent sequential metabolism (MSM) method based on comparative analysis along the digestive system following oral administration of licorice (Glycyrrhiza uralensis Fisch., leguminosae), a traditional Chinese medicine widely used for harmonizing other ingredients in a formulae. The licorice water extract (LWE) dissolved in Krebs-Ringer buffer solution (1 g/mL) was used to carry out the experiments and the comparative analysis was performed using HPLC and LC-MS/MS methods. In vitro incubation, in situ closed-loop and in vivo blood sampling were used to measure the LWE metabolic profile along the digestive system. The incubation experiment showed that the LWE was basically stable in digestive juice. A comparative analysis presented the metabolic profile of each prototype and its corresponding metabolites then. Liver was the major metabolic organ for LWE, and the metabolism by the intestinal flora and gut wall was also an important part of the process. The MSM method was practical and could be a potential method to describe the metabolic routes of multiple components before absorption into the systemic blood stream. Copyright © 2015 John Wiley & Sons, Ltd. Copyright © 2015 John Wiley & Sons, Ltd.

  10. Sustained effects of volcanic ash on biofilm stoichiometry, enzyme activity and community composition in North- Patagonia streams.

    Science.gov (United States)

    Carrillo, Uara; Díaz-Villanueva, Verónica; Modenutti, Beatriz

    2018-04-15

    Volcanic eruptions are extreme perturbations that affect ecosystems. These events can also produce persistent effects in the environment for several years after the eruption, with increased concentrations of suspended particles and the introduction of elements in the water column. On 4th June 2011, the Puyehue-Cordón Caulle Volcanic Complex (40.59°S-72.11°W, 2200m.a.s.l.) erupted explosively in southern Chile. The area affected by the volcano was devastated; a thick layer of volcanic ash (up to 30cm) was deposited in areas 50 km east of the volcano towards Argentina. The aim of the present study was to evaluate the effect of volcanic ash deposits on stream ecosystems four years after the eruption, comparing biofilm stoichiometry, alkaline phosphatase activity, and primary producer's assemblage in streams which were severely affected by the volcano with unaffected streams. We confirmed in the laboratory that ash deposited in the catchment of affected streams still leach phosphorus (P) into the water four years after eruption. Results indicate that affected streams still receive volcanic particles and that these particles release P, thus stream water exhibits high P concentration. Biofilm P content was higher and the C:P ratio lower in affected streams compared to unaffected streams. As a consequence of less P in unaffected streams, the alkaline phosphatase activity was higher compared to affected streams. Cyanobacteria increased their abundances (99.9% of total algal biovolume) in the affected streams suggesting that the increase in P may positively affect this group. On the contrary, unaffected streams contained a diatom dominant biofilm. In this way, local heterogeneity was created between sub-catchments located within 30 km of each other. These types of events should be seen as opportunities to gather valuable ecological information about how severe disturbances, like volcanic eruptions, shape landscapes and lotic systems for several years after the event

  11. Community Music Knowledge Exchange Research in Scottish Higher Education

    Science.gov (United States)

    Moran, Nikki; Loening, Gica

    2011-01-01

    This article examines the usefulness of Knowledge Exchange (KE) funding streams for higher education community music research projects, with a case study of one particular project that took place between February and April 2010. The project was funded via a KE stream, linking University researchers with a well-established community music charity…

  12. Responses of stream microbes to multiple anthropogenic stressors in a mesocosm study.

    Science.gov (United States)

    Nuy, Julia K; Lange, Anja; Beermann, Arne J; Jensen, Manfred; Elbrecht, Vasco; Röhl, Oliver; Peršoh, Derek; Begerow, Dominik; Leese, Florian; Boenigk, Jens

    2018-08-15

    Stream ecosystems are affected by multiple anthropogenic stressors worldwide. Even though effects of many single stressors are comparatively well studied, the effects of multiple stressors are difficult to predict. In particular bacteria and protists, which are responsible for the majority of ecosystem respiration and element flows, are infrequently studied with respect to multiple stressors responses. We conducted a stream mesocosm experiment to characterize the responses of single and multiple stressors on microbiota. Two functionally important stream habitats, leaf litter and benthic phototrophic rock biofilms, were exposed to three stressors in a full factorial design: fine sediment deposition, increased chloride concentration (salinization) and reduced flow velocity. We analyzed the microbial composition in the two habitat types of the mesocosms using an amplicon sequencing approach. Community analysis on different taxonomic levels as well as principle component analyses (PCoAs) based on realtive abundances of operational taxonomic units (OTUs) showed treatment specific shifts in the eukaryotic biofilm community. Analysis of variance (ANOVA) revealed that Bacillariophyta responded positively salinity and sediment increase, while the relative read abundance of chlorophyte taxa decreased. The combined effects of multiple stressors were mainly antagonistic. Therefore, the community composition in multiply stressed environments resembled the composition of the unstressed control community in terms of OTU occurrence and relative abundances. Copyright © 2018 The Authors. Published by Elsevier B.V. All rights reserved.

  13. Detecting the impact of bank and channel modification on invertebrate communities in Mediterranean temporary streams (Sardinia, SW Italy).

    Science.gov (United States)

    Buffagni, Andrea; Tenchini, Roberta; Cazzola, Marcello; Erba, Stefania; Balestrini, Raffaella; Belfiore, Carlo; Pagnotta, Romano

    2016-09-15

    We hypothesized that reach-scale, bank and channel modification would impact benthic communities in temporary rivers of Sardinia, when pollution and water abstraction are not relevant. A range of variables were considered, which include both artificial structures/alterations and natural features observed in a stream reach. Multivariate regression trees (MRT) were used to assess the effects of the explanatory variables on invertebrate assemblages and five groups, characterized by different habitat modification and/or features, were recognized. Four node variables determined the splits in the MRT analysis: channel reinforcement, tree-related bank and channel habitats, channel modification and bank modification. Continuity of trees in the river corridor diverged among MRT groups and significant differences among groups include presence of alders, extent of channel shading and substrate diversity. Also, the percentage of in-stream organic substrates, in particular CPOM/Xylal, showed highly significant differences among groups. For practical applications, thresholds for the extent of channel reinforcement (40%) and modification (10%) and for bank alteration (≈30%) were provided, that can be used to guide the implementation of restoration measures. In moderately altered river reaches, a significant extent of tree-related habitats (≈5%) can noticeably mitigate the effects of morphological alteration on aquatic invertebrates. The outcomes highlight the importance of riparian zone management as an opportune, achievable prospect in the restoration of Mediterranean temporary streams. The impact of bank and channel modification on ecological status (sensu WFD) was investigated and the tested benthic metrics, especially those based on abundance data, showed legible differences among MRT groups. Finally, bank and channel modification appears to be a potential threat for the conservation of a few Sardo-Corsican endemic species. The introduction of management criteria that

  14. Using high-frequency nitrogen and carbon measurements to decouple temporal dynamics of catchment and in-stream transport and reaction processes in a headwater stream

    Science.gov (United States)

    Blaen, P.; Riml, J.; Khamis, K.; Krause, S.

    2017-12-01

    Within river catchments across the world, headwater streams represent important sites of nutrient transformation and uptake due to their high rates of microbial community processing and relative abundance in the landscape. However, separating the combined influence of in-stream transport and reaction processes from the overall catchment response can be difficult due to spatio-temporal variability in nutrient and organic matter inputs, flow regimes, and reaction rates. Recent developments in optical sensor technologies enable high-frequency, in situ nutrient measurements, and thus provide opportunities for greater insights into in-stream processes. Here, we use in-stream observations of hourly nitrate (NO3-N), dissolved organic carbon (DOC) and dissolved oxygen (DO) measurements from paired in situ sensors that bound a 1 km headwater stream reach in a mixed-use catchment in central England. We employ a spectral approach to decompose (1) variances in solute loading from the surrounding landscape, and (2) variances in reach-scale in-stream nutrient transport and reaction processes. In addition, we estimate continuous rates of reach-scale NO3-N and DOC assimilation/dissimilation, ecosystem respiration and primary production. Comparison of these results over a range of hydrological conditions (baseflow, variable storm events) and timescales (event-based, diel, seasonal) facilitates new insights into the physical and biogeochemical processes that drive in-stream nutrient dynamics in headwater streams.

  15. A Critical Examination of the Use of Trained Health Coaches to Decrease the Metabolic Syndrome for Participants of a Community-Based Diabetes Prevention and Management Program.

    Science.gov (United States)

    Lucke-Wold, Brandon; Shawley, Samantha; Ingels, John Spencer; Stewart, Jonathan; Misra, Ranjita

    2016-01-01

    The epidemic of obesity and diabetes in the United States poses major challenge to the prevention and management of chronic diseases. Furthermore, when this is viewed in other components of the metabolic syndrome (i.e., the burden of high cholesterol and hypertension), the prevalence of the metabolic syndrome continues to rise in the USA continued challenge is how to deal with this epidemic from a medical and public health standpoint. Community Based Participatory Research (CBPR) is a unique approach and offers a novel perspective for answering this challenge. A critical set of goals for CBPR is to address health disparities and social inequalities while getting community members engaged in all aspects of the research process. Utilizing the West Virginia Diabetes Prevention and Management Program and trained Health Coaches as a model, we discuss topics of consideration related to CBPR, involving trained health coaches, optimizing early adoption of healthy lifestyle behaviors, and enhancing participation. Through careful project planning and design, questions regarding disparities increasing susceptibility and preventive efforts within the community can be addressed successfully. These topics are part of a broader integration of theories such as participatory research, community engagement, and outcomes measurement. The understanding of the pathophysiology and epidemiology of the metabolic syndrome can help frame an appropriate strategy for establishing long-term community-wide changes that promote health. In order to continue to improve investigations for preventing the metabolic syndrome, it will be necessary to have aggressive efforts at the individual and population level for developing culturally sensitive programs that start early and are sustainable in practical environments such as the workplace. In this comprehensive review, we will discuss practical considerations related to project design, implementation, and how to measure effectiveness in regards to

  16. Macrophyte Communities of Andean Rivers: Composition and Relation with Environmental Factors

    Directory of Open Access Journals (Sweden)

    Alida Marcela Gómez Rodríguez

    2017-01-01

    Full Text Available Small streams of tropical Andes have been poorly studied. Therefore, there is little information about the structure, dynamics and function of their macrophyte communities. In this research, aquatic plant communities of 18 Andean streams of La Vieja (Quindío and Otún (Risaralda river basins were studied; those are some of the basins most affected by anthropic activities in the country. Streams were selected according to their association with the main land’s uses of the region in both basins. The aim of the study was to evaluate the effect of land use on the structure of macrophyte communities. Streams running exclusively through each land use were selected. Sampling was done in two different climatic seasons of year 2006. Vegetation found (54 species belonging to 25 families was dominated by species with high capability of adaptation to changing and disturbed environments. Richness and abundance of macrophytes were lower than those reported in other tropical aquatic systems. Variables associated with land use, such as temperature, conductivity and type of substrate of the streams mainly explained the structure of the macrophyte communities: streams running on meat-cattle areas -with higher temperatures, conductivity and dominance of sandy-slimy substrates- had higher macrophyte species richness and abundance than streams of protected-forest areas, with higher coverage by riparian vegetation, lower temperatures and conductivity and rocky substrates.

  17. The effect of inundation frequency on ground beetle communities in a channelized mountain stream

    Science.gov (United States)

    Skalski, T.; Kedzior, R.; Radecki-Pawlik, A.

    2012-04-01

    size distribution of ground beetles is significantly right skewed on more frequently flooded areas whereas on more stable localities it becomes left skewed. Our results also demonstrated that the presence of ERS does not changes the structure of ground beetle communities if the frequency of inundation of river banks is reduced. This study indicated that not only habitat parameters but also biotic interactions between competing species from a regional pool are important for the conservation of riverine communities. Vulnerable beetles characteristic of riverine habitats are small and usually weak competitors. A reduced frequency of bank inundation creates possibilities for the colonization of ERS by species from surrounding habitats and elimination of the species well adapted to the dynamic flow conditions typifying unmodified stream sections.

  18. Effects of stream topology on ecological community results from neutral models

    Science.gov (United States)

    While neutral theory and models have stimulated considerable literature, less well investigated is the effect of topology on neutral metacommunity model simulations. We implemented a neutral metacommunity model using two different stream network topologies, a widely branched netw...

  19. Metaproteome analysis to determine the metabolically active part of a thermophilic microbial community producing biogas from agricultural biomass.

    Science.gov (United States)

    Hanreich, Angelika; Heyer, Robert; Benndorf, Dirk; Rapp, Erdmann; Pioch, Markus; Reichl, Udo; Klocke, Michael

    2012-07-01

    Complex consortia of microorganisms are responsible for biogas production. A lot of information about the taxonomic structure and enzymatic potential of such communities has been collected by a variety of gene-based approaches, yet little is known about which of all the assumable metabolic pathways are active throughout the process of biogas formation. To tackle this problem, we established a protocol for the metaproteomic analysis of samples taken from biogas reactors fed with agricultural biomass. In contrast to previous studies where an anaerobic digester was fed with synthetic wastewater, the complex matrix in this study required the extraction of proteins with liquid phenol and the application of paper bridge loading for 2-dimensional gel electrophoresis. Proteins were subjected to nanoHPLC (high-performance liquid chromatography) coupled to tandem mass spectrometry for characterization. Several housekeeping proteins as well as methanogenesis-related enzymes were identified by a MASCOT search and de novo sequencing, which proved the feasibility of our approach. The establishment of such an approach is the basis for further metaproteomic studies of biogas-producing communities. In particular, the apparent status of metabolic activities within the communities can be monitored. The knowledge collected from such experiments could lead to further improvements of biogas production.

  20. Elevated CO2 shifts the functional structure and metabolic potentials of soil microbial communities in a C4 agroecosystem.

    Science.gov (United States)

    Xiong, Jinbo; He, Zhili; Shi, Shengjing; Kent, Angela; Deng, Ye; Wu, Liyou; Van Nostrand, Joy D; Zhou, Jizhong

    2015-03-20

    Atmospheric CO2 concentration is continuously increasing, and previous studies have shown that elevated CO2 (eCO2) significantly impacts C3 plants and their soil microbial communities. However, little is known about effects of eCO2 on the compositional and functional structure, and metabolic potential of soil microbial communities under C4 plants. Here we showed that a C4 maize agroecosystem exposed to eCO2 for eight years shifted the functional and phylogenetic structure of soil microbial communities at both soil depths (0-5 cm and 5-15 cm) using EcoPlate and functional gene array (GeoChip 3.0) analyses. The abundances of key genes involved in carbon (C), nitrogen (N) and phosphorus (P) cycling were significantly stimulated under eCO2 at both soil depths, although some differences in carbon utilization patterns were observed between the two soil depths. Consistently, CO2 was found to be the dominant factor explaining 11.9% of the structural variation of functional genes, while depth and the interaction of depth and CO2 explained 5.2% and 3.8%, respectively. This study implies that eCO2 has profound effects on the functional structure and metabolic potential/activity of soil microbial communities associated with C4 plants, possibly leading to changes in ecosystem functioning and feedbacks to global change in C4 agroecosystems.

  1. Metabolic Engineering X Conference

    Energy Technology Data Exchange (ETDEWEB)

    Flach, Evan [American Institute of Chemical Engineers

    2015-05-07

    The International Metabolic Engineering Society (IMES) and the Society for Biological Engineering (SBE), both technological communities of the American Institute of Chemical Engineers (AIChE), hosted the Metabolic Engineering X Conference (ME-X) on June 15-19, 2014 at the Westin Bayshore in Vancouver, British Columbia. It attracted 395 metabolic engineers from academia, industry and government from around the globe.

  2. Macroinvertebrates associated with bryophyta in a first-order Atlantic Forest stream

    Directory of Open Access Journals (Sweden)

    Beatriz F. J. V. Rosa

    2011-06-01

    Full Text Available This study describes the composition and structure of the benthic community associated with bryophytes in a first-order stream, located in a biological reserve of the Atlantic Forest, during two seasons. During three months of the dry season of 2007 and three months of the rainy season of 2008, samples of bryophytes attached to stones were collected randomly, along a 100 m stream reach. The structure of the community was analyzed through the mean density of individuals, Shannon's diversity index, Pielou's evenness, family richness, dominance index, and the percentage of Ephemeroptera, Plecoptera and Trichoptera (% EPT. Chironomidae larvae were dominant in the two periods of study, followed by Ceratopogonidae in the rainy season, and Naididae in the dry season. The orders EPT contributed 14 families. The results showed that bryophytes constitute suitable habitat which is able to shelter an abundant and diversified benthic fauna in a small extension of the stream. This habitat provides refuge during spates, and thus minimizes downstream transport of the macroinvertebrate fauna.

  3. Stream biofilm responses to flow intermittency: from cells to ecosystems

    Directory of Open Access Journals (Sweden)

    Sergi eSabater

    2016-03-01

    Full Text Available Temporary streams are characterized by the alternation of dry and wet hydrological phases, creating both a harsh environment for the biota as well as a high diversity of opportunities for adaptation. These systems are eminently microbial-based during several of these hydrological phases, and those growing on all solid substrata (biofilms accordingly change their physical structure and community composition. Biofilms experience large decreases on cell densities and biomass, both of bacteria and algae, during dryness. Algal and bacterial communities show remarkable decreases in their diversity, at least locally (at the habitat scale. Biofilms also respond with significant physiological plasticity to each of the hydrological changes. The decreasing humidity of the substrata through the drying process, and the changing quantity and quality of organic matter and nutrients available in the stream during that process, causes unequal responses on the biofilm bacteria and algae. Biofilm algae are affected faster than bacteria by the hydric stress, and as a result the ecosystem respiration resists longer than gross primary production to the increasing duration of flow intermittency. This response implies enhancing ecosystem heterotrophy, a pattern that can be exacerbated in temporary streams suffering of longer dry periods under global change.

  4. Nutrient Uptake and Metabolism Along a Large Scale Tropical Physical-Chemical Gradient

    Science.gov (United States)

    Tromboni, F.; Neres-Lima, V.; Saltarelli, W. A.; Miwa, A. C. P.; Cunha, D. G. F.

    2016-12-01

    Nutrient spiraling is a whole-system approach for estimating nutrient uptake that can be used to assess aquatic ecosystems' responses to environmental change and anthropogenic impacts. Historically research on nutrient dynamic uptake in streams has focused on single nutrient dynamics and only rarely the stoichiometric uptake has been considered and linked to carbon metabolism driven by autotrophic and heterotrophic production. We investigated the relationship between uptake of phosphate (PO43-), nitrate (NO3-) ammonium (NH4+) and total dissolve nitrogen (DIN)/ PO43-; and gross primary production (GPP), respiration (R), and net ecosystem productivity (NEP) in six relatively pristine streams with differences regarding canopy cover and physical characteristics, located in a large scale gradient from tropical Atlantic Forest to an Atlantic forest/Cerrado (Brazilian Savanna) transition. We carried out whole stream instantaneous additions of PO43-, NO3- and NH4+ added to each stream in combination, using the TASCC (Tracer Additions for Spiraling Curve Characterization) method. Metabolism measurements were performed in the same streams right after uptake was measured, using one-station open channel method and re-aeration estimations for those sites. We found different background concentrations in the streams located in the Atlantic forest compared with the transition area with Cerrado. In general PO43- and NO3- uptake increased with the decreasing of canopy cover, while a positive relation with background concentration better explained NH4+uptake. DIN/PO43- uptake increased with increasing R and NEP. Little work on functional characteristics of pristine streams has been conducted in this region and this work provides an initial characterization on nitrogen and phosphorus dynamics as well as their stoichiometric uptake in streams.

  5. Metabolic profiles of prokaryotic and eukaryotic communities in deep-sea sponge Neamphius huxleyi [corrected]. indicated by metagenomics.

    Science.gov (United States)

    Li, Zhi-Yong; Wang, Yue-Zhu; He, Li-Ming; Zheng, Hua-Jun

    2014-01-27

    The whole metabolism of a sponge holobiont and the respective contributions of prokaryotic and eukaryotic symbionts and their associations with the sponge host remain largely unclear. Meanwhile, compared with shallow water sponges, deep-sea sponges are rarely understood. Here we report the metagenomic exploration of deep-sea sponge Neamphius huxleyi [corrected] . at the whole community level. Metagenomic data showed phylogenetically diverse prokaryotes and eukaryotes in Neamphius huxleyi [corrected]. MEGAN and gene enrichment analyses indicated different metabolic potentials of prokaryotic symbionts from eukaryotic symbionts, especially in nitrogen and carbon metabolisms, and their molecular interactions with the sponge host. These results supported the hypothesis that prokaryotic and eukaryotic symbionts have different ecological roles and relationships with sponge host. Moreover, vigorous denitrification, and CO2 fixation by chemoautotrophic prokaryotes were suggested for this deep-sea sponge. The study provided novel insights into the respective potentials of prokaryotic and eukaryotic symbionts and their associations with deep-sea sponge Neamphius huxleyi [corrected].

  6. A study of the effects of implementing agricultural best management practices and in-stream restoration on suspended sediment, stream habitat, and benthic macroinvertebrates at three stream sites in Surry County, North Carolina, 2004-2007-Lessons learned

    Science.gov (United States)

    Smith, Douglas G.; Ferrell, G.M.; Harned, Douglas A.; Cuffney, Thomas F.

    2011-01-01

    Creek site indicated a statistically significant (phabitat characteristics were similar at the Bull Creek and Hogan Creek reaches. However, the Pauls Creek reach was distinguished from the other two sites by a lack of pools, greater bankfull widths, greater streamflow and velocity, and larger basin size. Historical changes in the stream channel in the vicinity of the Pauls Creek streamgage are evident in aerial photographs dating from 1936 to 2005 and could have contributed to stream-channel instability. The duration of this study likely was inadequate for detecting changes in stream habitat characteristics. Benthic macroinvertebrate assemblages differed by site and changed during the course of the study. Bull Creek, the best management practices site, stood out as the site having the poorest overall conditions and the greatest improvement in benthic macroinvertebrate communities during the study period. Richness and diversity metrics indicated that benthic macroinvertebrate community conditions at the Hogan Creek and Pauls Creek sites declined during the study, although the status was excellent based on the North Carolina Index of Biotic Integrity. Experiences encountered during this study exemplify the difficulties of attempting to assess the short-term effects of stream-improvement efforts on a watershed scale and, in particular, the difficulty of finding similar basins for a comparative study. Data interpretation was complicated by dry climatic conditions and unanticipated land disturbances that occurred during the study in each of the three study basins. For example, agricultural best management practices were implemented in the drainage basin of the control site prior to and during the study. An impoundment on Bull Creek upstream from the streamgaging station probably influenced water-quality conditions and streamflow. Road construction in the vicinity of the Pauls Creek site potentially masked changes related to stream-improvement efforts. In addition, stream

  7. The Stream-Catchment (StreamCat) and Lake-Catchment ...

    Science.gov (United States)

    Background/Question/MethodsLake and stream conditions respond to both natural and human-related landscape features. Characterizing these features within contributing areas (i.e., delineated watersheds) of streams and lakes could improve our understanding of how biological conditions vary spatially and improve the use, management, and restoration of these aquatic resources. However, the specialized geospatial techniques required to define and characterize stream and lake watersheds has limited their widespread use in both scientific and management efforts at large spatial scales. We developed the StreamCat and LakeCat Datasets to model, predict, and map the probable biological conditions of streams and lakes across the conterminous US (CONUS). Both StreamCat and LakeCat contain watershed-level characterizations of several hundred natural (e.g., soils, geology, climate, and land cover) and anthropogenic (e.g., urbanization, agriculture, mining, and forest management) landscape features for ca. 2.6 million stream segments and 376,000 lakes across the CONUS, respectively. These datasets can be paired with field samples to provide independent variables for modeling and other analyses. We paired 1,380 stream and 1,073 lake samples from the USEPAs National Aquatic Resource Surveys with StreamCat and LakeCat and used random forest (RF) to model and then map an invertebrate condition index and chlorophyll a concentration, respectively. Results/ConclusionsThe invertebrate

  8. Biodegradation and attenuation of steroidal hormones and alkylphenols by stream biofilms and sediments

    Science.gov (United States)

    Writer, Jeffrey; Barber, Larry B.; Ryan, Joseph N.; Bradley, Paul M.

    2011-01-01

    Biodegradation of select endocrine-disrupting compounds (17β-estradiol, estrone, 17α-ethynylestradiol, 4-nonylphenol, 4-nonylphenolmonoexthoylate, and 4-nonylphenoldiethoxylate) was evaluated in stream biofilm, sediment, and water matrices collected from locations upstream and downstream from a wastewater treatment plant effluent discharge. Both biologically mediated transformation to intermediate metabolites and biologically mediated mineralization were evaluated in separate time interval experiments. Initial time intervals (0–7 d) evaluated biodegradation by the microbial community dominant at the time of sampling. Later time intervals (70 and 185 d) evaluated the biodegradation potential as the microbial community adapted to the absence of outside energy sources. The sediment matrix was more effective than the biofilm and water matrices at biodegrading 4-nonylphenol and 17β-estradiol. Biodegradation by the sediment matrix of 17α-ethynylestradiol occurred at later time intervals (70 and 185 d) and was not observed in the biofilm or water matrices. Stream biofilms play an important role in the attenuation of endocrine-disrupting compounds in surface waters due to both biodegradation and sorption processes. Because sorption to stream biofilms and bed sediments occurs on a faster temporal scale (185 d), these compounds can accumulate in stream biofilms and sediments.

  9. Longitudinal and seasonal changes in functional organization of macroinvertebrate communities in four Oregon streams.

    OpenAIRE

    Hawkins, C. P.; Sedell, J. R.

    1981-01-01

    Relative numerical dominance and densities of invertebrate functional feeding groups are compared with longitudinal and seasonal changes in food resources in a Cascade Range stream system in Oregon. We also compare our data with hypothetical predictions of the River Continuum model. We found that both relative abundances and densities of functional groups fit qualitative characterization of stream reaches and the River Continuum model: Shredders dominated upper shaded reaches; scrapers were m...

  10. The Effects of Run-of-River Hydroelectric Power Schemes on Fish Community Composition in Temperate Streams and Rivers.

    Science.gov (United States)

    Bilotta, Gary S; Burnside, Niall G; Gray, Jeremy C; Orr, Harriet G

    2016-01-01

    The potential environmental impacts of large-scale storage hydroelectric power (HEP) schemes have been well-documented in the literature. In Europe, awareness of these potential impacts and limited opportunities for politically-acceptable medium- to large-scale schemes, have caused attention to focus on smaller-scale HEP schemes, particularly run-of-river (ROR) schemes, to contribute to meeting renewable energy targets. Run-of-river HEP schemes are often presumed to be less environmentally damaging than large-scale storage HEP schemes. However, there is currently a lack of peer-reviewed studies on their physical and ecological impact. The aim of this article was to investigate the effects of ROR HEP schemes on communities of fish in temperate streams and rivers, using a Before-After, Control-Impact (BACI) study design. The study makes use of routine environmental surveillance data collected as part of long-term national and international monitoring programmes at 23 systematically-selected ROR HEP schemes and 23 systematically-selected paired control sites. Six area-normalised metrics of fish community composition were analysed using a linear mixed effects model (number of species, number of fish, number of Atlantic salmon-Salmo salar, number of >1 year old Atlantic salmon, number of brown trout-Salmo trutta, and number of >1 year old brown trout). The analyses showed that there was a statistically significant effect (pcomposition. The implications of these findings are discussed in this article and recommendations are made for best-practice study design for future fish community impact studies.

  11. Streaming Pool: reuse, combine and create reactive streams with pleasure

    CERN Multimedia

    CERN. Geneva

    2017-01-01

    When connecting together heterogeneous and complex systems, it is not easy to exchange data between components. Streams of data are successfully used in industry in order to overcome this problem, especially in the case of "live" data. Streams are a specialization of the Observer design pattern and they provide asynchronous and non-blocking data flow. The ongoing effort of the ReactiveX initiative is one example that demonstrates how demanding this technology is even for big companies. Bridging the discrepancies of different technologies with common interfaces is already done by the Reactive Streams initiative and, in the JVM world, via reactive-streams-jvm interfaces. Streaming Pool is a framework for providing and discovering reactive streams. Through the mechanism of dependency injection provided by the Spring Framework, Streaming Pool provides a so called Discovery Service. This object can discover and chain streams of data that are technologically agnostic, through the use of Stream IDs. The stream to ...

  12. Carbon cycling and exports over diel and flood-recovery timescales in a subtropical rainforest headwater stream

    Energy Technology Data Exchange (ETDEWEB)

    Looman, Arún, E-mail: arun.looman@scu.edu.au [National Marine Science Centre, Southern Cross University, Coffs Harbour, New South Wales (Australia); School of Environment, Science, and Engineering, Southern Cross University, Lismore, New South Wales (Australia); Santos, Isaac R.; Tait, Douglas R.; Webb, Jackie R. [National Marine Science Centre, Southern Cross University, Coffs Harbour, New South Wales (Australia); School of Environment, Science, and Engineering, Southern Cross University, Lismore, New South Wales (Australia); Sullivan, Caroline A.; Maher, Damien T. [School of Environment, Science, and Engineering, Southern Cross University, Lismore, New South Wales (Australia)

    2016-04-15

    Catchment headwaters comprise the majority of all stream length globally, however, carbon (C) dynamics in these systems remains poorly understood. We combined continuous measurements of pCO{sub 2} and radon ({sup 222}Rn, a natural groundwater tracer) with discrete sampling for particulate organic, dissolved organic and inorganic carbon (POC, DOC, and DIC) to assess the short-term carbon dynamics of a pristine subtropical headwater stream in Australia, over contrasting hydrologic regimes of drought, flash-flooding and recovery. Observations over 23 days revealed a shift from carbon losses dominated by CO{sub 2} outgassing under conditions of low flow (66.4 ± 0.4% of carbon export) to downstream exports of carbon during the flood (87.8 ± 9.7% of carbon export). DOC was the dominant form of downstream exports throughout the study (DOC:DIC:POC = 0.82:0.05:0.13). The broadest diel variability among variables occurred during the drought phase, with diel variability up to 662 μatm d{sup −1} (or 27 μM [CO{sub 2}*] d{sup −1}), 17 μM d{sup −1} and 268 Bq m{sup −3} d{sup −1} for pCO{sub 2}, dissolved oxygen and {sup 222}Rn, respectively. Diel dynamics indicated multiple interrelated drivers of stream water chemistry including groundwater seepage and in-stream metabolism. The catchment exported terrestrial carbon throughout the field campaign, with a mean net stream flux of 4.7 ± 7.8 mmol C m{sup −2} (catchment area) d{sup −1} which is equivalent to 1.4 ± 2.3% of the estimated local terrestrial net primary production. Our observations highlight the importance of accounting for hydrological extremes when assessing the carbon budgets and ecosystem metabolism of headwater streams, and provide a first estimate of aquatic carbon exports from a pristine Australian subtropical rainforest. - Highlights: • First carbon export estimates of a pristine Australian subtropical headwater catchment. • Metabolism and hydrology were drivers of aquatic carbon flux.

  13. Carbon cycling and exports over diel and flood-recovery timescales in a subtropical rainforest headwater stream

    International Nuclear Information System (INIS)

    Looman, Arún; Santos, Isaac R.; Tait, Douglas R.; Webb, Jackie R.; Sullivan, Caroline A.; Maher, Damien T.

    2016-01-01

    Catchment headwaters comprise the majority of all stream length globally, however, carbon (C) dynamics in these systems remains poorly understood. We combined continuous measurements of pCO_2 and radon ("2"2"2Rn, a natural groundwater tracer) with discrete sampling for particulate organic, dissolved organic and inorganic carbon (POC, DOC, and DIC) to assess the short-term carbon dynamics of a pristine subtropical headwater stream in Australia, over contrasting hydrologic regimes of drought, flash-flooding and recovery. Observations over 23 days revealed a shift from carbon losses dominated by CO_2 outgassing under conditions of low flow (66.4 ± 0.4% of carbon export) to downstream exports of carbon during the flood (87.8 ± 9.7% of carbon export). DOC was the dominant form of downstream exports throughout the study (DOC:DIC:POC = 0.82:0.05:0.13). The broadest diel variability among variables occurred during the drought phase, with diel variability up to 662 μatm d"−"1 (or 27 μM [CO_2*] d"−"1), 17 μM d"−"1 and 268 Bq m"−"3 d"−"1 for pCO_2, dissolved oxygen and "2"2"2Rn, respectively. Diel dynamics indicated multiple interrelated drivers of stream water chemistry including groundwater seepage and in-stream metabolism. The catchment exported terrestrial carbon throughout the field campaign, with a mean net stream flux of 4.7 ± 7.8 mmol C m"−"2 (catchment area) d"−"1 which is equivalent to 1.4 ± 2.3% of the estimated local terrestrial net primary production. Our observations highlight the importance of accounting for hydrological extremes when assessing the carbon budgets and ecosystem metabolism of headwater streams, and provide a first estimate of aquatic carbon exports from a pristine Australian subtropical rainforest. - Highlights: • First carbon export estimates of a pristine Australian subtropical headwater catchment. • Metabolism and hydrology were drivers of aquatic carbon flux. • Catchment exports ranged between 1.1 and 18.6 mmol C m

  14. Interaction between stream temperature, streamflow, and groundwater exchanges in alpine streams

    Science.gov (United States)

    Constantz, James E.

    1998-01-01

    Four alpine streams were monitored to continuously collect stream temperature and streamflow for periods ranging from a week to a year. In a small stream in the Colorado Rockies, diurnal variations in both stream temperature and streamflow were significantly greater in losing reaches than in gaining reaches, with minimum streamflow losses occurring early in the day and maximum losses occurring early in the evening. Using measured stream temperature changes, diurnal streambed infiltration rates were predicted to increase as much as 35% during the day (based on a heat and water transport groundwater model), while the measured increase in streamflow loss was 40%. For two large streams in the Sierra Nevada Mountains, annual stream temperature variations ranged from 0° to 25°C. In summer months, diurnal stream temperature variations were 30–40% of annual stream temperature variations, owing to reduced streamflows and increased atmospheric heating. Previous reports document that one Sierra stream site generally gains groundwater during low flows, while the second Sierra stream site may lose water during low flows. For August the diurnal streamflow variation was 11% at the gaining stream site and 30% at the losing stream site. On the basis of measured diurnal stream temperature variations, streambed infiltration rates were predicted to vary diurnally as much as 20% at the losing stream site. Analysis of results suggests that evapotranspiration losses determined diurnal streamflow variations in the gaining reaches, while in the losing reaches, evapotranspiration losses were compounded by diurnal variations in streambed infiltration. Diurnal variations in stream temperature were reduced in the gaining reaches as a result of discharging groundwater of relatively constant temperature. For the Sierra sites, comparison of results with those from a small tributary demonstrated that stream temperature patterns were useful in delineating discharges of bank storage following

  15. Impact of wildfire on stream nutrient chemistry and ecosystem metabolism in boreal forest catchments of interior Alaska

    Science.gov (United States)

    Emma F. Betts; Jeremy B. Jones

    2009-01-01

    With climatic warming, wildfire occurrence is increasing in the boreal forest of interior Alaska. Loss of catchment vegetation during fire can impact streams directly through altered solute and debris inputs and changed light and temperature regimes. Over longer time scales, fire can accelerate permafrost degradation, altering catchment hydrology and stream nutrient...

  16. Metal toxicity affects predatory stream invertebrates less than other functional feeding groups

    International Nuclear Information System (INIS)

    Liess, Matthias; Gerner, Nadine V.; Kefford, Ben J.

    2017-01-01

    Ecosystem effects of heavy metals need to be identified for a retrospective risk assessment, and potential impacts need to be predicted for a prospective risk assessment. In this study, we established a strong correlation between the toxic pressure of dissolved metals and invertebrate species. We compiled available data from a wide geographical range of Australian streams that were contaminated with heavy metals [mainly copper (Cu) and zinc (Zn)] and the corresponding invertebrate communities. Heavy metal toxicity is positively related to the proportion of predators within the invertebrate community, represented by the predator ratio , with an effect threshold range of 2.6 μg/L - 26 μg/L for Cu and 62 μg/L - 617 μg/L for Zn. These effect concentrations are in the ranges of the concentrations identified in model ecosystems and other field investigations and are just above the existing guideline limits. Heavy metals also affects the taxa richness negatively. Other community measures, such as the evenness, number of EPT (Ephemeroptera, Plecoptera, and Trichoptera) taxa, SPEcies At Risk (SPEAR) pesticides or SPEAR salinity were relatively poorly correlated with heavy metal toxicity in the streams. Therefore, we suggest applying the predator ratio within the community as a starting point for an indicator of the dissolved metal toxicity, the SPEAR metals . - Highlights: • Data on dissolved metals and invertebrates were compiled for a wide geographical range. • Heavy metal toxicity was strongly related to the predator ratio. • Ecologically relevant thresholds identified for Cu and Zn were above the guideline limits. - Increasing metal toxicity for Cu and Zn in streams could be related to an increasing predator ratio within the invertebrate community.

  17. Evaluation of stream crossing methods prior to gas pipeline construction

    International Nuclear Information System (INIS)

    Murphy, M.H.; Rogers, J.S.; Ricca, A.

    1995-01-01

    Stream surveys are conducted along proposed gas pipeline routes prior to construction to assess potential impacts to stream ecosystems and to recommend preferred crossing methods. Recently, there has been a high level of scrutiny from the Public Service Commission (PSC) to conduct these stream crossings with minimal effects to the aquatic community. PSC's main concern is the effect of sediment on aquatic biota. Smaller, low flowing or intermittent streams are generally crossed using a wet crossing technique. This technique involves digging a trench for the pipeline while the stream is flowing. Sediment control measures are used to reduce sediment loads downstream. Wider, faster flowing, or protected streams are typically crossed with a dry crossing technique. A dry crossing involves placing a barrier upstream of the crossing and diverting the water around the crossing location. The pipeline trench is then dug in the dry area. O'Brien and Gere and NYSEG have jointly designed a modified wet crossing for crossing streams that exceed maximum flows for a dry crossing, and are too wide for a typical wet crossing. This method diverts water around the crossing using a pumping system, instead of constructing a dam. The trench is similar to a wet crossing, with sediment control devices in place upstream and downstream. If streams are crossed during low flow periods, the pumping system will be able to reduce the majority of water flow and volume form the crossing area, thereby reducing ecological impacts. Evaluation of effects of this crossing type on the stream biota are currently proposed and may proceed when construction begins

  18. Aquatic insect community structure under the influence of small dams in a stream of the Mogi-Guaçu river basin, state of São Paulo.

    Science.gov (United States)

    Saulino, H H L; Corbi, J J; Trivinho-Strixino, S

    2014-02-01

    The fragmentation of lotic systems caused by construction of dams has modified many aquatic communities. The objective of this study was to analyse changes in the aquatic insect community structure by discontinuity of habitat created by dams along the Ribeirão das Anhumas, a sub-basin of the Mogi-Guaçu River (state of São Paulo, Brazil). Entomofauna collection was carried out in 10 segments upstream and downstream of five dams along the longitudinal profile of the stream, with a quick sampling method using a D net (mesh 250 mm) with 2 minutes of sampling effort. The insects were sorted and identified to the lowest possible taxonomic level and analysed by the Shannon diversity index, β diversity, richness estimated by rarefaction curves and relative participation of functional feeding groups. The results showed a slight reduction in diversity in the downstream segments, as well as along the longitudinal profile of the stream. However, there were no significant differences in abundance and richness between the upstream and downstream segments, indicating that the dams did not influence these variables. Differences were observed in the functional feeding groups along the longitudinal profile. Predator and gatherer insects were dominant in all segments analysed. The feeding group of shredders was more abundant in the segment DSIII with the participation of Marilia Müller (Odontoceridae - Trichoptera), although we observed a decrease of shredders and scrapers with the decrease of the canopy cover reducing values of β diversity in the continuum of Ribeirão das Anhumas. This result demonstrated the importance of the conservation of the riparian vegetation in order to maintain the integrity of the stream.

  19. Larval aquatic insect responses to cadmium and zinc in experimental streams.

    Science.gov (United States)

    Mebane, Christopher A; Schmidt, Travis S; Balistrieri, Laurie S

    2017-03-01

    To evaluate the risks of metal mixture effects to natural stream communities under ecologically relevant conditions, the authors conducted 30-d tests with benthic macroinvertebrates exposed to cadmium (Cd) and zinc (Zn) in experimental streams. The simultaneous exposures were with Cd and Zn singly and with Cd+Zn mixtures at environmentally relevant ratios. The tests produced concentration-response patterns that for individual taxa were interpreted in the same manner as classic single-species toxicity tests and for community metrics such as taxa richness and mayfly (Ephemeroptera) abundance were interpreted in the same manner as with stream survey data. Effect concentrations from the experimental stream exposures were usually 2 to 3 orders of magnitude lower than those from classic single-species tests. Relative to a response addition model, which assumes that the joint toxicity of the mixtures can be predicted from the product of their responses to individual toxicants, the Cd+Zn mixtures generally showed slightly less than additive toxicity. The authors applied a modeling approach called Tox to explore the mixture toxicity results and to relate the experimental stream results to field data. The approach predicts the accumulation of toxicants (hydrogen, Cd, and Zn) on organisms using a 2-pK a bidentate model that defines interactions between dissolved cations and biological receptors (biotic ligands) and relates that accumulation through a logistic equation to biological response. The Tox modeling was able to predict Cd+Zn mixture responses from the single-metal exposures as well as responses from field data. The similarity of response patterns between the 30-d experimental stream tests and field data supports the environmental relevance of testing aquatic insects in experimental streams. Environ Toxicol Chem 2017;36:749-762. Published 2016 Wiley Periodicals Inc. on behalf of SETAC. This article is a US government work and, as such, is in the public domain in the

  20. Recovery of community genomes to assess subsurface metabolic potential: exploiting the capacity of next generation sequencing-based metagenomics

    Science.gov (United States)

    Wrighton, K. C.; Thomas, B.; Miller, C. S.; Sharon, I.; Wilkins, M. J.; VerBerkmoes, N. C.; Handley, K. M.; Lipton, M. S.; Hettich, R. L.; Williams, K. H.; Long, P. E.; Banfield, J. F.

    2011-12-01

    With the goal of developing a deterministic understanding of the microbiological and geochemical processes controlling subsurface environments, groundwater bacterial communities were collected from the Rifle Integrated Field Research Challenge (IFRC) site. Biomass from three temporal acetate-stimulated groundwater samples were collected during a period of dominant Fe(III)-reduction, in a region of the aquifer that had previously received acetate amendment the year prior. Phylogenetic analysis revealed a diverse Bacterial community, notably devoid of Archaea with 249 taxa from 9 Bacterial phyla including the dominance of uncultured candidate divisions, BD1-5, OD1, and OP11. We have reconstructed 86 partial to near-complete genomes and have performed a detailed characterization of the underlying metabolic potential of the ecosystem. We assessed the natural variation and redundancy in multi-heme c-type cytochromes, sulfite reductases, and central carbon metabolic pathways. Deep genomic sampling indicated the community contained various metabolic pathways: sulfur oxidation coupled to microaerophilic conditions, nitrate reduction with both acetate and inorganic compounds as donors, carbon and nitrogen fixation, antibiotic warfare, and heavy-metal detoxification. Proteomic investigations using predicted proteins from metagenomics corroborated that acetate oxidation is coupled to reduction of oxygen, sulfur, nitrogen, and iron across the samples. Of particular interest was the detection of acetate oxidizing and sulfate reducing proteins from a Desulfotalea-like bacterium in all three time points, suggesting that aqueous sulfide produced by active sulfate-reducing bacteria could contribute to abiotic iron reduction during the dominant iron reduction phase. Additionally, proteogenomic analysis verified that a large portion of the community, including members of the uncultivated BD1-5, are obligate fermenters, characterized by the presence of hydrogen-evolving hydrogenases

  1. Risk assessment of salinity and turbidity in Victoria (Australia) to stream insects' community structure does not always protect functional traits.

    Science.gov (United States)

    Kefford, Ben J; Schäfer, Ralf B; Metzeling, Leon

    2012-01-15

    Ecological risk assessments mostly consider measures of community composition (structure) across large spatial scales. These assessments, using species sensitivity distributions (SSDs) or the relative species retention (RSR), may not be protective of ecosystem functions and services at smaller spatial scales. Here we examine how changes in biological traits, as proxy for ecosystem functions/services, at a fine spatial scale relate to larger scale assessment of structure. We use functional traits of stream insect species in south-east Australia in two habitats (riffle and edge/pool). We find that the protection of community structure in terms of 95% of species over multiple sites against adverse effects of salinity (as electrical conductivity) and turbidity will mostly, but not always, protect traits at smaller scales. Considering different combinations of trait modalities, contaminants and habitat, a mean of 17.5% (range 0%-36.8) of cases would result in under-protection of trait modalities despite protecting species composition (in terms of Jaccard's Index). This under-protection of trait modalities is only because of the different spatial scales that community structure and the traits were considered. We recommend that where the protection of biological traits, ecosystem functions or ecosystem services from stressors is a management goal, protective targets should not be solely set using measures of community structure such as SSDs or RSR. To protect both structural and functional attributes separate risk assessments should be done. Copyright © 2011 Elsevier B.V. All rights reserved.

  2. Large-scale environmental controls on microbial biofilms in high-alpine streams

    Directory of Open Access Journals (Sweden)

    T. J. Battin

    2004-01-01

    Full Text Available Glaciers are highly responsive to global warming and important agents of landscape heterogeneity. While it is well established that glacial ablation and snowmelt regulate stream discharge, linkage among streams and streamwater geochemistry, the controls of these factors on stream microbial biofilms remain insufficiently understood. We investigated glacial (metakryal, hypokryal, groundwater-fed (krenal and snow-fed (rhithral streams - all of them representative for alpine stream networks - and present evidence that these hydrologic and hydrogeochemical factors differentially affect sediment microbial biofilms. Average microbial biomass and bacterial carbon production were low in the glacial streams, whereas bacterial cell size, biomass, and carbon production were higher in the tributaries, most notably in the krenal stream. Whole-cell in situ fluorescence hybridization revealed reduced detection rates of the Eubacteria and higher abundance of α-Proteobacteria in the glacial stream, a pattern that most probably reflects the trophic status of this ecosystem. Our data suggest low flow during the onset of snowmelt and autumn as a short period (hot moment of favorable environmental conditions with pulsed inputs of allochthonous nitrate and dissolved organic carbon, and with disproportionately high microbial growth. Tributaries are relatively more constant and favorable environments than kryal streams, and serve as possible sources of microbes and organic matter to the main glacial channel during periods (e.g., snowmelt of elevated hydrologic linkage among streams. Ice and snow dynamics - and their impact on the amount and composition of dissolved organic matter - have a crucial impact on stream biofilms, and we thus need to consider microbes and critical hydrological episodes in future models of alpine stream communities.

  3. Relation between Streaming Potential and Streaming Electrification Generated by Streaming of Water through a Sandwich-type Cell

    OpenAIRE

    Maruyama, Kazunori; Nikaido, Mitsuru; Hara, Yoshinori; Tanizaki, Yoshie

    2012-01-01

    Both streaming potential and accumulated charge of water flowed out were measured simultaneously using a sandwich-type cell. The voltages generated in divided sections along flow direction satisfied additivity. The sign of streaming potential agreed with that of streaming electrification. The relation between streaming potential and streaming electrification was explained from a viewpoint of electrical double layer in glass-water interface.

  4. Small mammal populations in a restored stream corridor

    International Nuclear Information System (INIS)

    Wike, L.D.

    2000-01-01

    An opportunity to study the response of a small mammal community to restoration of a riparian wetland was provided by the Pen Branch project at the Savannah River Site (SRS). Live trapping of small mammals was conducted on six transects at Pen Branch in 1996 and 1998 and at three transects at Meyer's Branch, an unimpacted stream at SRS, in 1997 and 1998. Distributions of rates of capture of the four most common species were both spatially and temporally uneven. Kruskal-Wallis one-way analysis of variance found no significant differences in the relationship of capture rates between species and between treatment and both the within-stream control and Meyers Branch. Habitat use and movement within stream corridors appears to be dependent primarily on species, with age and sex perhaps contributing to preference and distance moved. The lack of differences in capture rates related to transect or treatment may be due to the close proximity of sample transects relative to the movement potential of the species sampled

  5. Macrophyte Communities of Andean Rivers: Composition and Relation with Environmental Factors

    OpenAIRE

    Alida Marcela Gómez Rodríguez; Luz Teresa Valderrama Valderrama; Carlos A. Rivera-Rondón

    2017-01-01

    Small streams of tropical Andes have been poorly studied. Therefore, there is little information about the structure, dynamics and function of their macrophyte communities. In this research, aquatic plant communities of 18 Andean streams of La Vieja (Quindío) and Otún (Risaralda) river basins were studied; those are some of the basins most affected by anthropic activities in the country. Streams were selected according to their association with the main land’s uses of the region in both basin...

  6. Different cesium-137 transfers to forest and stream ecosystems

    International Nuclear Information System (INIS)

    Sakai, Masaru; Gomi, Takashi; Negishi, Junjiro N.; Iwamoto, Aimu; Okada, Kengo

    2016-01-01

    Understanding the mechanisms of "1"3"7Cs movement across different ecosystems is crucial for projecting the environmental impact and management of nuclear contamination events. Here, we report differential movement of "1"3"7Cs in adjacent forest and stream ecosystems. The food webs of the forest and stream ecosystems in our study were similar, in that they were both dominated by detrital-based food webs and the basal energy source was terrestrial litter. However, the concentration of "1"3"7Cs in stream litter was significantly lower than in forest litter, the result of "1"3"7Cs leaching from litter in stream water. The difference in "1"3"7Cs concentrations between the two types of litter was reflected in the "1"3"7Cs concentrations in the animal community. While the importance of "1"3"7Cs fallout and the associated transfer to food webs has been well studied, research has been primarily limited to cases in a single ecosystem. Our results indicate that there are differences in the flow of "1"3"7Cs through terrestrial and aquatic ecosystems, and that "1"3"7Cs concentrations are reduced in both basal food resources and higher trophic animals in aquatic systems, where primary production is subsidized by a neighboring terrestrial ecosystem. - Highlights: • Detrital-based food web structure was observed in both forest and stream ecosystems. • The "1"3"7Cs concentration in litter was 4 times lower in stream than in forest. • The difference of "1"3"7Cs concentration in litter reflected in animal contamination. • "1"3"7Cs leaching from litter decreases contamination level of stream food web. - Leaching from litter in stream decreases "1"3"7Cs concentration in litter, and the contamination level of food web in stream ecosystem is lower than that in adjacent forest ecosystem.

  7. Metabolic Requirements of Escherichia coli in Intracellular Bacterial Communities during Urinary Tract Infection Pathogenesis

    Directory of Open Access Journals (Sweden)

    Matt S. Conover

    2016-04-01

    Full Text Available Uropathogenic Escherichia coli (UPEC is the primary etiological agent of over 85% of community-acquired urinary tract infections (UTIs. Mouse models of infection have shown that UPEC can invade bladder epithelial cells in a type 1 pilus-dependent mechanism, avoid a TLR4-mediated exocytic process, and escape into the host cell cytoplasm. The internalized UPEC can clonally replicate into biofilm-like intracellular bacterial communities (IBCs of thousands of bacteria while avoiding many host clearance mechanisms. Importantly, IBCs have been documented in urine from women and children suffering acute UTI. To understand this protected bacterial niche, we elucidated the transcriptional profile of bacteria within IBCs using microarrays. We delineated the upregulation within the IBC of genes involved in iron acquisition, metabolism, and transport. Interestingly, lacZ was highly upregulated, suggesting that bacteria were sensing and/or utilizing a galactoside for metabolism in the IBC. A ΔlacZ strain displayed significantly smaller IBCs than the wild-type strain and was attenuated during competitive infection with a wild-type strain. Similarly, a galK mutant resulted in smaller IBCs and attenuated infection. Further, analysis of the highly upregulated gene yeaR revealed that this gene contributes to oxidative stress resistance and type 1 pilus production. These results suggest that bacteria within the IBC are under oxidative stress and, consistent with previous reports, utilize nonglucose carbon metabolites. Better understanding of the bacterial mechanisms used for IBC development and establishment of infection may give insights into development of novel anti-virulence strategies.

  8. StreamMap: Smooth Dynamic Visualization of High-Density Streaming Points.

    Science.gov (United States)

    Li, Chenhui; Baciu, George; Han, Yu

    2018-03-01

    Interactive visualization of streaming points for real-time scatterplots and linear blending of correlation patterns is increasingly becoming the dominant mode of visual analytics for both big data and streaming data from active sensors and broadcasting media. To better visualize and interact with inter-stream patterns, it is generally necessary to smooth out gaps or distortions in the streaming data. Previous approaches either animate the points directly or present a sampled static heat-map. We propose a new approach, called StreamMap, to smoothly blend high-density streaming points and create a visual flow that emphasizes the density pattern distributions. In essence, we present three new contributions for the visualization of high-density streaming points. The first contribution is a density-based method called super kernel density estimation that aggregates streaming points using an adaptive kernel to solve the overlapping problem. The second contribution is a robust density morphing algorithm that generates several smooth intermediate frames for a given pair of frames. The third contribution is a trend representation design that can help convey the flow directions of the streaming points. The experimental results on three datasets demonstrate the effectiveness of StreamMap when dynamic visualization and visual analysis of trend patterns on streaming points are required.

  9. Analyzing indicators of stream health for Minnesota streams

    Science.gov (United States)

    Singh, U.; Kocian, M.; Wilson, B.; Bolton, A.; Nieber, J.; Vondracek, B.; Perry, J.; Magner, J.

    2005-01-01

    Recent research has emphasized the importance of using physical, chemical, and biological indicators of stream health for diagnosing impaired watersheds and their receiving water bodies. A multidisciplinary team at the University of Minnesota is carrying out research to develop a stream classification system for Total Maximum Daily Load (TMDL) assessment. Funding for this research is provided by the United States Environmental Protection Agency and the Minnesota Pollution Control Agency. One objective of the research study involves investigating the relationships between indicators of stream health and localized stream characteristics. Measured data from Minnesota streams collected by various government and non-government agencies and research institutions have been obtained for the research study. Innovative Geographic Information Systems tools developed by the Environmental Science Research Institute and the University of Texas are being utilized to combine and organize the data. Simple linear relationships between index of biological integrity (IBI) and channel slope, two-year stream flow, and drainage area are presented for the Redwood River and the Snake River Basins. Results suggest that more rigorous techniques are needed to successfully capture trends in IBI scores. Additional analyses will be done using multiple regression, principal component analysis, and clustering techniques. Uncovering key independent variables and understanding how they fit together to influence stream health are critical in the development of a stream classification for TMDL assessment.

  10. Characterization of the microbial community composition and the distribution of Fe-metabolizing bacteria in a creek contaminated by acid mine drainage.

    Science.gov (United States)

    Sun, Weimin; Xiao, Enzong; Krumins, Valdis; Dong, Yiran; Xiao, Tangfu; Ning, Zengping; Chen, Haiyan; Xiao, Qingxiang

    2016-10-01

    A small watershed heavily contaminated by long-term acid mine drainage (AMD) from an upstream abandoned coal mine was selected to study the microbial community developed in such extreme system. The watershed consists of AMD-contaminated creek, adjacent contaminated soils, and a small cascade aeration unit constructed downstream, which provide an excellent contaminated site to study the microbial response in diverse extreme AMD-polluted environments. The results showed that the innate microbial communities were dominated by acidophilic bacteria, especially acidophilic Fe-metabolizing bacteria, suggesting that Fe and pH are the primary environmental factors in governing the indigenous microbial communities. The distribution of Fe-metabolizing bacteria showed distinct site-specific patterns. A pronounced shift from diverse communities in the upstream to Proteobacteria-dominated communities in the downstream was observed in the ecosystem. This location-specific trend was more apparent at genus level. In the upstream samples (sampling sites just below the coal mining adit), a number of Fe(II)-oxidizing bacteria such as Alicyclobacillus spp., Metallibacterium spp., and Acidithrix spp. were dominant, while Halomonas spp. were the major Fe(II)-oxidizing bacteria observed in downstream samples. Additionally, Acidiphilium, an Fe(III)-reducing bacterium, was enriched in the upstream samples, while Shewanella spp. were the dominant Fe(III)-reducing bacteria in downstream samples. Further investigation using linear discriminant analysis (LDA) effect size (LEfSe), principal coordinate analysis (PCoA), and unweighted pair group method with arithmetic mean (UPGMA) clustering confirmed the difference of microbial communities between upstream and downstream samples. Canonical correspondence analysis (CCA) and Spearman's rank correlation indicate that total organic carbon (TOC) content is the primary environmental parameter in structuring the indigenous microbial communities

  11. New methods for modeling stream temperature using high resolution LiDAR, solar radiation analysis and flow accumulated values

    Science.gov (United States)

    In-stream temperature directly effects a variety of biotic organisms, communities and processes. Changes in stream temperature can render formally suitable habitat unsuitable for aquatic organisms, particularly native cold water species that are not able to adjust. In order to an...

  12. Community size and metabolic rates of psychrophilic sulfate-reducing bacteria in Arctic marine sediments

    DEFF Research Database (Denmark)

    Knoblauch, C.; Jørgensen, BB; Harder, J.

    1999-01-01

    The numbers of sulfate reducers in two Arctic sediments within situ temperatures of 2.6 and -1.7 degrees C were determined. Most-probable-number counts were higher at 10 degrees C than at 20 degrees C, indicating the predominance of a psychrophilic community. Mean specific sulfate reduction rates...... of 19 isolated psychrophiles were compared to corresponding rates of 9 marine, mesophilic sulfate-reducing bacteria. The results indicate that, as a physiological adaptation to the permanently cold Arctic environment, psychrophilic sulfate reducers have considerably higher specific metabolic rates than...... their mesophilic counterparts at similarly low temperatures....

  13. Soil-covered strategy for ecological restoration alters the bacterial community structure and predictive energy metabolic functions in mine tailings profiles.

    Science.gov (United States)

    Li, Yang; Sun, Qingye; Zhan, Jing; Yang, Yang; Wang, Dan

    2017-03-01

    Native soil amendment has been widely used to stabilize mine tailings and speed up the development of soil biogeochemical functions before revegetation; however, it remains poorly understood about the response of microbial communities to ecological restoration of mine tailings with soil-covered strategy. In this study, microbial communities along a 60-cm profile were investigated in mine tailings during ecological restoration of two revegetation strategies (directly revegetation and native soil covered) with different plant species. The mine tailings were covered by native soils as thick as 40 cm for more than 10 years, and the total nitrogen, total organic carbon, water content, and heavy metal (Fe, Cu, and Zn) contents in the 0-40 cm intervals of profiles were changed. In addition, increased microbial diversity and changed microbial community structure were also found in the 10-40 cm intervals of profiles in soil-covered area. Soil-covered strategy rather than plant species and soil depth was the main factor influencing the bacterial community, which explained the largest portion (29.96%) of the observed variation. Compared directly to revegetation, soil-covered strategy exhibited the higher relative abundance of Acidobacteria and Deltaproteobacteria and the lower relative abundance of Bacteroidetes, Gemmatimonadetes, Betaproteobacteria, and Gammaproteobacteria. PICRUSt analysis further demonstrated that soil-covered caused energy metabolic functional changes in carbon, nitrogen, and sulfur metabolism. Given all these, the soil-covered strategy may be used to fast-track the establishment of native microbial communities and is conducive to the rehabilitation of biogeochemical processes for establishing native plant species.

  14. Measurement of the Ecological Integrity of Cerrado Streams Using Biological Metrics and the Index of Habitat Integrity

    Directory of Open Access Journals (Sweden)

    Deusiano Florêncio dos Reis

    2017-01-01

    Full Text Available Generally, aquatic communities reflect the effects of anthropogenic changes such as deforestation or organic pollution. The Cerrado stands among the most threatened ecosystems by human activities in Brazil. In order to evaluate the ecological integrity of the streams in a preserved watershed in the Northern Cerrado biome corresponding to a mosaic of ecosystems in transition to the Amazonia biome in Brazil, biological metrics related to diversity, structure, and sensitivity of aquatic macroinvertebrates were calculated. Sampling included collections along stretches of 200 m of nine streams and measurements of abiotic variables (temperature, electrical conductivity, pH, total dissolved solids, dissolved oxygen, and discharge and the Index of Habitat Integrity (HII. The values of the abiotic variables and the HII indicated that most of the streams have good ecological integrity, due to high oxygen levels and low concentrations of dissolved solids and electric conductivity. Two streams showed altered HII scores mainly related to small dams for recreational and domestic use, use of Cerrado natural pasture for cattle raising, and spot deforestation in bathing areas. However, this finding is not reflected in the biological metrics that were used. Considering all nine streams, only two showed satisfactory ecological quality (measured by Biological Monitoring Working Party (BMWP, total richness, and EPT (Ephemeroptera, Plecoptera, and Trichoptera richness, only one of which had a low HII score. These results indicate that punctual measures of abiotic parameters do not reveal the long-term impacts of anthropic activities in these streams, including related fire management of pasture that annually alters the vegetation matrix and may act as a disturbance for the macroinvertebrate communities. Due to this, biomonitoring of low order streams in Cerrado ecosystems of the Northern Central Brazil by different biotic metrics and also physical attributes of the

  15. Survival of Acetate in Biodegraded Stream Water DOM: New Insights Based on NMR Spectroscopy

    Science.gov (United States)

    Whitty, S.; Waggoner, D. C.; Bowen, J. C.; Cory, R. M.; Kaplan, L.; Hatcher, P.

    2017-12-01

    DOM is a complex chemical mixture of high- (HMW) and low-molecular-weight (LMW) organic molecules that serve as the primary energy sources for heterotrophic bacteria in freshwater environments. However, there are still large uncertainties on the composition of DOM that is labile and thus rapidly metabolized. The current thinking is that labile DOM is primarily composed of monosaccharides, amino acids, and other LMW organic acids such as formic, acetic, or propionic among others, although some humic substances also are biologically labile. To test the contribution of LMW organic acids to the labile fraction of DOM, freshwater samples were collected from five streams within the Rio Tempisquito watershed in Costa Rica and subjected to differing degrees of biodegradation using a series of plug-flow bioreactors with residence times ranging from 0.5-150 min. Varying the residence times of bioreactors allows for separation and identification of labile from less labile to more recalcitrant DOM. The stream water fed into the bioreactors had DOC concentrations that ranged from 0.7-1.2 ppm C and the GF/F-filtered stream water as well as the bioreactor effluents were analyzed directly without pre-treatment using proton nuclear magnetic resonance spectroscopy (1H NMR). Small molecules dominated the 1H NMR spectra with the greatest changes, as a function of bioreactor residence time, in the carbohydrate, terminal methyl, and long-chain methylene structures. In contrast, acetate remained relatively constant after 150 min of bioreactor residence time, thus raising the question of why this inherently labile volatile fatty acid was not consumed by stream microbes colonizing bioreactors that otherwise metabolized approximately 35% of the total dissolved organic carbon present in the stream water. We suggest that acetate may resist biodegradation because it is complexed strongly with inorganic cations.

  16. Effect of land use on the composition, diversity and abundance of insects drifting in neotropical streams

    Directory of Open Access Journals (Sweden)

    B. C. G. Gimenez

    Full Text Available Abstract Streams may exhibit differences in community structure of invertebrate drift, which may be a reflex of variation in environmental factors, able to change in conditions of anthropogenic interventions. The aim of this study was to analyze the composition, diversity and abundance of insects drifting in two neotropical streams under different land use and to identify the environmental factors involved in determining such patterns. 54 taxa of aquatic insects were identified in urban and rural streams. The results indicated significant differences in species composition due to the replacement of specialist species by generalist species in the urban stream. Higher diversity of taxa was recorded in the rural stream, with high levels of dissolved oxygen and high water flow, which favored the occurrence of sensitive groups to environmental disturbances, such as Ephemeroptera, Plecoptera, Trichoptera and Coleoptera taxa, that living mainly in clean and well oxygenated waters. On the other hand, a higher density of insects drifting, especially Chironomidae, was observed in the urban stream, where high values of pH, electrical conductivity and nitrogen were observed. These larvae are able to explore a wide range of environmental conditions, owing to their great capacity for physiological adaptation. Despite observing the expected patterns, there were no significant differences between streams for the diversity and abundance of species. Thus, the species composition can be considered as the best predictor of impacts on the drifting insect community.

  17. Deforestation and benthic indicators: how much vegetation cover is needed to sustain healthy Andean streams?

    Science.gov (United States)

    Iñiguez-Armijos, Carlos; Leiva, Adrián; Frede, Hans-Georg; Hampel, Henrietta; Breuer, Lutz

    2014-01-01

    Deforestation in the tropical Andes is affecting ecological conditions of streams, and determination of how much forest should be retained is a pressing task for conservation, restoration and management strategies. We calculated and analyzed eight benthic metrics (structural, compositional and water quality indices) and a physical-chemical composite index with gradients of vegetation cover to assess the effects of deforestation on macroinvertebrate communities and water quality of 23 streams in southern Ecuadorian Andes. Using a geographical information system (GIS), we quantified vegetation cover at three spatial scales: the entire catchment, the riparian buffer of 30 m width extending the entire stream length, and the local scale defined for a stream reach of 100 m in length and similar buffer width. Macroinvertebrate and water quality metrics had the strongest relationships with vegetation cover at catchment and riparian scales, while vegetation cover did not show any association with the macroinvertebrate metrics at local scale. At catchment scale, the water quality metrics indicate that ecological condition of Andean streams is good when vegetation cover is over 70%. Further, macroinvertebrate community assemblages were more diverse and related in catchments largely covered by native vegetation (>70%). Our results suggest that retaining an important quantity of native vegetation cover within the catchments and a linkage between headwater and riparian forests help to maintain and improve stream biodiversity and water quality in Andean streams affected by deforestation. This research proposes that a strong regulation focused to the management of riparian buffers can be successful when decision making is addressed to conservation/restoration of Andean catchments.

  18. Impact of Unconventional Shale Gas Waste Water Disposal on Surficial Streams

    Science.gov (United States)

    Cozzarelli, I.; Akob, D.; Mumford, A. C.

    2014-12-01

    The development of unconventional natural gas resources has been rapidly increasing in recent years, however, the environmental impacts and risks are not yet well understood. A single well can generate up to 5 million L of produced water (PW) consisting of a blend of the injected fluid and brine from a shale formation. With thousands of wells completed in the past decade, the scope of the challenge posed in the management of this wastewater becomes apparent. The USGS Toxic Substances Hydrology Program is studying both intentional and unintentional releases of PW and waste solids. One method for the disposal of PW is underground injection; we are assessing the potential risks of this method through an intensive, interdisciplinary study at an injection disposal facility in the Wolf Creek watershed in WV. Disposal of PW via injection begun in 2002, with over 5.5 mil. L of PW injected to date. The facility consists of the injection well, a tank farm, and two former holding ponds (remediated in early 2014) and is bordered by two small tributaries of Wolf Creek. Water and sediments were acquired from these streams in June 2014, including sites upstream, within, and downstream from the facility. We are analyzing aqueous and solid phase geochemistry, mineralogy, hydrocarbon content, microbial community composition, and potential toxicity. Field measurements indicated that conductivity downstream (416 μS/cm) was elevated in comparison to upstream (74 μS/cm) waters. Preliminary data indicated elevated Cl- (115 mg/L) and Br- (0.88 mg/L) concentrations downstream, compared to 0.88 mg/L Cl- and impacting nearby streams. In addition, total Fe concentrations downstream were 8.1 mg/L, far in excess of the 0.13 mg/L found upstream from the facility, suggesting the potential for microbial Fe cycling. We are conducting a broad suite of experiments to assess the potential for microbial metabolism of the organic components of PW, and to determine the effects of this metabolism on the

  19. Bacillus licheniformis affects the microbial community and metabolic profile in the spontaneous fermentation of Daqu starter for Chinese liquor making.

    Science.gov (United States)

    Wang, Peng; Wu, Qun; Jiang, Xuejian; Wang, Zhiqiang; Tang, Jingli; Xu, Yan

    2017-06-05

    Chinese liquor is produced from spontaneous fermentation starter (Daqu) that provides the microbes, enzymes and flavors for liquor fermentation. To improve the flavor character of Daqu, we inoculated Bacillus licheniformis and studied the effect of this strain on the community structure and metabolic profile in Daqu fermentation. The microbial relative abundance changed after the inoculation, including the increase in Bacillus, Clavispora and Aspergillus, and the decrease in Pichia, Saccharomycopsis and some other genera. This variation was also confirmed by pure culture and coculture experiments. Seventy-three metabolites were identified during Daqu fermentation process. After inoculation, the average content of aromatic compounds were significantly enriched from 0.37mg/kg to 0.90mg/kg, and the average content of pyrazines significantly increased from 0.35mg/kg to 5.71mg/kg. The increase in pyrazines was positively associated with the metabolism of the inoculated Bacillus and the native genus Clavispora, because they produced much more pyrazines in their cocultures. Whereas the increase in aromatic compounds might be related to the change of in situ metabolic activity of several native genera, in particular, Aspergillus produced more aromatic compounds in cocultures with B. licheniformis. It indicated that the inoculation of B. licheniformis altered the flavor character of Daqu by both its own metabolic activity and the variation of in situ metabolic activity. Moreover, B. licheniformis inoculation influenced the enzyme activity of Daqu, including the significant increase in amylase activity (from 1.3gstarch/g/h to 1.7gstarch/g/h), and the significant decrease in glucoamylase activity (from 627.6mgglucose/g/h to 445.6mgglucose/g/h) and esterase activity (from 28.1mgethylcaproate/g/100h to 17.2mgethylcaproate/g/100h). These effects of inoculation were important factors for regulating the metabolism of microbial communities, hence for improving the flavor profile

  20. Quality of Streams in Johnson County, Kansas, and Relations to Environmental Variables, 2003-07

    Science.gov (United States)

    Rasmussen, Teresa J.; Poulton, Barry C.; Graham, Jennifer L.

    2009-01-01

    The quality of streams and relations to environmental variables in Johnson County, northeastern Kansas, were evaluated using water, streambed sediment, land use, streamflow, habitat, algal periphyton (benthic algae), and benthic macroinvertebrate data. Water, streambed sediment, and macroinvertebrate samples were collected in March 2007 during base flow at 20 stream sites that represent 11 different watersheds in the county. In addition, algal periphyton samples were collected twice (spring and summer 2007) at one-half of the sites. Environmental data including water and streambed-sediment chemistry data (primarily nutrients, fecal-indicator bacteria, and organic wastewater compounds), land use, streamflow, and habitat data were used in statistical analyses to evaluate relations between biological conditions and variables that may affect them. This report includes an evaluation of water and streambed-sediment chemistry, assessment of habitat conditions, comparison of biological community attributes (such as composition, diversity, and abundance) among sampling sites, placement of sampling sites into impairment categories, evaluation of biological data relative to environmental variables, and evaluation of changes in biological communities and effects of urbanization. This evaluation is useful for understanding factors that affect stream quality, for improving water-quality management programs, and for documenting changing conditions over time. The information will become increasingly important for protecting streams in the future as urbanization continues. Results of this study indicate that the biological quality at nearly all biological sampling sites in Johnson County has some level of impairment. Periphyton taxa generally were indicative of somewhat degraded conditions with small to moderate amounts of organic enrichment. Camp Branch in the Blue River watershed was the only site that met State criteria for full support of aquatic life in 2007. Since 2003

  1. Recolonization by warmwater fishes and crayfishes after severe drought in upper coastal plain hill streams

    Science.gov (United States)

    Susan B. Adams; Melvin L. Warren

    2005-01-01

    Extreme hydrologic disturbance, such as a supraseasonal drought, can dramatically influence aquatic communities. Documentation of the responses of aquatic communities after such disturbances provides insight into the timing, order, and mechanisms of recolonization. Postdisturbance recolonization of streams depends on many factors, including the region and...

  2. The influence of Glyceria maxima and nitrate input on the composition and nitrate metabolism of the dissimilatory nitrate-reducing bacterial community

    NARCIS (Netherlands)

    Nijburg, J.W.; Laanbroek, H.J.

    1997-01-01

    The influence of nitrate addition and the presence of Glyceria maxima (reed sweetgrass) on the composition and nitrate metabolism of the dissimilatory nitrate-reducing bacterial community was investigated. Anoxic freshwater sediment was incubated in pots with or without G. maxima and with or

  3. Influence of fertilizer draw solution properties on the process performance and microbial community structure in a side-stream anaerobic fertilizer-drawn forward osmosis - ultrafiltration bioreactor.

    Science.gov (United States)

    Kim, Youngjin; Li, Sheng; Chekli, Laura; Phuntsho, Sherub; Ghaffour, Noreddine; Leiknes, TorOve; Shon, Ho Kyong

    2017-09-01

    In this study, a side-stream anaerobic fertilizer-drawn forward osmosis (FDFO) and ultrafiltration (UF) membrane bioreactor (MBR) hybrid system was proposed and operated for 55days. The FDFO performance was first investigated in terms of flux decline with various fertilizers draw solution. Flux decline was very severe with all fertilizers due to the absence of aeration and the sticky property of sludge. Flux recovery by physical cleaning varied significantly amongst tested fertilizers which seriously affected biofouling in FDFO via reverse salt flux (RSF). Besides, RSF had a significant impact on nutrient accumulation in the bioreactor. These results indicated that nutrient accumulation negatively influenced the anaerobic activity. To elucidate these phenomena, bacterial and archaeal community structures were analyzed by pyrosequencing. Results showed that bacterial community structure was affected by fertilizer properties with less impact on archaeal community structure, which resulted in a reduction in biogas production and an increase in nitrogen content. Copyright © 2017 Elsevier Ltd. All rights reserved.

  4. Seasonal species composition of invertebrates in several Oregon streams.

    Science.gov (United States)

    Pamela E. Porter; William R. Meehan

    1987-01-01

    The invertebrate communities ofeight Oregon streams were sampled seasonally from 1974 to 1976. Benthic, drift, and two types of aerial-trap samples were collected. Occurrence and percentage composition are summarized by sample type, season, and geographic area (coastal, Cascade, central, and eastern Oregon). Within 276 families, 426 taxa were identified; the 20...

  5. Quantification of metabolically active transient storage (MATS) in two reaches with contrasting transient storage and ecosystem respiration

    Science.gov (United States)

    Alba Argerich; Roy Haggerty; Eugènia Martí; Francesc Sabater; Jay. Zarnetske

    2011-01-01

    Water transient storage zones are hotspots for metabolic activity in streams although the contribution of different types of transient storage zones to the whole�]reach metabolic activity is difficult to quantify. In this study we present a method to measure the fraction of the transient storage that is metabolically active (MATS) in two consecutive reaches...

  6. Habitat associations of fish and aquatic turtles in an East Texas Stream

    Directory of Open Access Journals (Sweden)

    Riedle J.D.

    2016-01-01

    Full Text Available The community structure of stream communities are treated as bioassays of stream ecosystems and changes to species patterns within those communities reflect response to multiple stressors including natural fluctuations in environmental variables. Research has focused on the structure of fish assemblages and there is increasing interest in environmental factors structuring turtle communities. Both fishes and turtles can be sampled using common methods, but are rarely studied together. Our objective was to compare distribution of fish and turtle species based on measured environmental variables in East Texas, USA. Species distributions were influenced by flow, substrate, and emergent vegetation. Results from Monte Carlo permutation tests suggest that downed woody debris and water temperature also had a strong influence on species distributions. Co-correspondence analysis showed considerable overlap of species scores in the absence of environmental variables. The five macrohabitats sampled exhibited varying degrees of connectivity and thus species mixing, which is driven by annual fluctuations in precipitation. Results from this study suggest that turtles and fishes can be considered simultaneously and exhibit similar patterns of species distribution across the landscape, at least at local scales.

  7. Nitrate removal in stream ecosystems measured by 15N addition experiments: Total uptake

    Science.gov (United States)

    Hall, R.O.; Tank, J.L.; Sobota, D.J.; Mulholland, P.J.; O'Brien, J. M.; Dodds, W.K.; Webster, J.R.; Valett, H.M.; Poole, G.C.; Peterson, B.J.; Meyer, J.L.; McDowell, W.H.; Johnson, S.L.; Hamilton, S.K.; Grimm, N. B.; Gregory, S.V.; Dahm, Clifford N.; Cooper, L.W.; Ashkenas, L.R.; Thomas, S.M.; Sheibley, R.W.; Potter, J.D.; Niederlehner, B.R.; Johnson, L.T.; Helton, A.M.; Crenshaw, C.M.; Burgin, A.J.; Bernot, M.J.; Beaulieu, J.J.; Arangob, C.P.

    2009-01-01

    We measured uptake length of 15NO-3 in 72 streams in eight regions across the United States and Puerto Rico to develop quantitative predictive models on controls of NO-3 uptake length. As part of the Lotic Intersite Nitrogen eXperiment II project, we chose nine streams in each region corresponding to natural (reference), suburban-urban, and agricultural land uses. Study streams spanned a range of human land use to maximize variation in NO-3 concentration, geomorphology, and metabolism. We tested a causal model predicting controls on NO-3 uptake length using structural equation modeling. The model included concomitant measurements of ecosystem metabolism, hydraulic parameters, and nitrogen concentration. We compared this structural equation model to multiple regression models which included additional biotic, catchment, and riparian variables. The structural equation model explained 79% of the variation in log uptake length (S Wtot). Uptake length increased with specific discharge (Q/w) and increasing NO-3 concentrations, showing a loss in removal efficiency in streams with high NO-3 concentration. Uptake lengths shortened with increasing gross primary production, suggesting autotrophic assimilation dominated NO-3 removal. The fraction of catchment area as agriculture and suburban-urban land use weakly predicted NO-3 uptake in bivariate regression, and did improve prediction in a set of multiple regression models. Adding land use to the structural equation model showed that land use indirectly affected NO-3 uptake lengths via directly increasing both gross primary production and NO-3 concentration. Gross primary production shortened SWtot, while increasing NO-3 lengthened SWtot resulting in no net effect of land use on NO- 3 removal. ?? 2009.

  8. Structural and metabolic responses of microbial community to sewage-borne chlorpyrifos in constructed wetlands.

    Science.gov (United States)

    Zhang, Dan; Wang, Chuan; Zhang, Liping; Xu, Dong; Liu, Biyun; Zhou, Qiaohong; Wu, Zhenbin

    2016-06-01

    Long-term use of chlorpyrifos poses a potential threat to the environment that cannot be ignored, yet little is known about the succession of substrate microbial communities in constructed wetlands (CWs) under chlorpyrifos stress. Six pilot-scale CW systems receiving artificial wastewater containing 1mg/L chlorpyrifos were established to investigate the effects of chlorpyrifos and wetland vegetation on the microbial metabolism pattern of carbon sources and community structure, using BIOLOG and denaturing gradient gel electrophoresis (DGGE) approaches. Based on our samples, BIOLOG showed that Shannon diversity (H') and richness (S) values distinctly increased after 30days when chlorpyrifos was added. At the same time, differences between the vegetated and the non-vegetated systems disappeared. DGGE profiles indicated that H' and S had no significant differences among four different treatments. The effect of chlorpyrifos on the microbial community was mainly reflected at the physiological level. Principal component analysis (PCA) of both BIOLOG and DGGE showed that added chlorpyrifos made a difference on test results. Meanwhile, there was no difference between the vegetation and no-vegetation treatments after addition of chlorpyrifos at the physiological level. Moreover, the vegetation had no significant effect on the microbial community at the genetic level. Comparisons were made between bacteria in this experiment and other known chlorpyrifos-degrading bacteria. The potential chlorpyrifos-degrading ability of bacteria in situ may be considerable. Copyright © 2016. Published by Elsevier B.V.

  9. Trait-based approaches in the analysis of stream fish communities

    Science.gov (United States)

    Frimpong, Emmanuel; Angermeier, Paul

    2010-01-01

    Species traits are used to study the functional organization of fish communities for a range of reasons, from simply reducing data dimensionality to providing mechanistic explanations for observed variation in communities. Ecological and life history traits have been used to understand the basic ecology of fishes and predict (1) species and community responses to habitat and climate alteration, and (2) species extinction, species invasion, and community homogenization. Many approaches in this arena have been developed during the past three decades, but they often have not been integrated with related ecological concepts or subdisciplines, which has led to confusion in terminology. We review 102 studies of species traits and then summarize patterns in traits being used and questions being addressed with trait-based approaches. Overall, studies of fish–habitat relationships that apply habitat templates and hierarchical filters dominate our sample; the most frequently used traits are related to feeding. We define and show the relationships among key terms such as fundamental and realized niches; functional traits, performance, and fitness; tactic, trait-state, syndromes, and strategies; and guilds and functional groups. We propose accelerating research to (1) quantify trait plasticity, (2) identify traits useful for testing ecological hypotheses, (3) model habitat and biotic interactions in communities while explicitly accounting for phylogenetic relationships, (4) explore how traits control community assembly, and (5) document the importance of traits in fish– community responses to anthropogenic change and in delivering ecosystem services. Further synthesis of these topics is still needed to develop concepts, models, and principles that can unify the disparate approaches taken in trait-based analysis of fish communities, link fish community ecology to general community ecology, and inform sustainable management of ecosystems.

  10. Evaluation of long term effects of thermal effluents on stream biota

    International Nuclear Information System (INIS)

    Sublette, J.E.

    1980-10-01

    In order to evaluate the effects of energy related developments in aquatic ecosystems, a normal water data base must be established. One approach used is the selection of indicator communities on species with fairly well known environmental tolerances and requirements. The Chironomidae (Order Diptera) dominate the macrobenthic assemblages of many streams. The group offers great potential for water quality assessment. The studies in this report determine the species composition of Chironomidae at stream sites in New Mexico, across the relationship of species composition to water quality parameters, and map karyotypes for the chironomus decorus group

  11. Colonization Habitat Controls Biomass, Composition, and Metabolic Activity of Attached Microbial Communities in the Columbia River Hyporheic Corridor

    Energy Technology Data Exchange (ETDEWEB)

    Stern, Noah; Ginder-Vogel, Matthew; Stegen, James C.; Arntzen, Evan; Kennedy, David W.; Larget, Bret R.; Roden, Eric E.; Kostka, Joel E.

    2017-06-09

    Hydrologic exchange plays a critical role in biogeochemical cycling within the hyporheic zone (the interface between river water and groundwater) of riverine ecosystems. Such exchange may set limits on the rates of microbial metabolism and impose deterministic selection on microbial communities that adapt to dynamically changing dissolved organic carbon (DOC) sources. This study examined the response of attached microbial communities (in situcolonized sand packs) from groundwater, hyporheic, and riverbed habitats within the Columbia River hyporheic corridor to “cross-feeding” with either groundwater, river water, or DOC-free artificial fluids. Our working hypothesis was that deterministic selection duringin situcolonization would dictate the response to cross-feeding, with communities displaying maximal biomass and respiration when supplied with their native fluid source. In contrast to expectations, the major observation was that the riverbed colonized sand had much higher biomass and respiratory activity, as well as a distinct community structure, compared with those of the hyporheic and groundwater colonized sands. 16S rRNA gene amplicon sequencing revealed a much higher proportion of certain heterotrophic taxa as well as significant numbers of eukaryotic algal chloroplasts in the riverbed colonized sand. Significant quantities of DOC were released from riverbed sediment and colonized sand, and separate experiments showed that the released DOC stimulated respiration in the groundwater and piezometer colonized sand. These results suggest that the accumulation and degradation of labile particulate organic carbon (POC) within the riverbed are likely to release DOC, which may enter the hyporheic corridor during hydrologic exchange, thereby stimulating microbial activity and imposing deterministic selective pressure on the microbial community composition.

    IMPORTANCEThe influence of river water

  12. Bifenthrin causes trophic cascades and alters insect emergence in mesocosms: implication for small streams

    Science.gov (United States)

    Rogers, Holly; Schmidt, Travis S.; Dabney, Brittanie L.; Hladik, Michelle; Mahler, Barbara J.; Van Metre, Peter C.

    2016-01-01

    Direct and indirect ecological effects of the widely used insecticide bifenthrin on stream ecosystems are largely unknown. To investigate such effects, a manipulative experiment was conducted in stream mesocosms that were colonized by aquatic insect communities and exposed to bifenthrin-contaminated sediment; implications for natural streams were interpreted through comparison of mesocosm results to a survey of 100 Midwestern streams, USA. In the mesocosm experiment, direct effects of bifenthrin exposure included reduced larval macroinvertebrate abundance, richness, and biomass at concentrations (EC50s ranged 197.6 – 233.5 ng bifenthrin/ g organic carbon) previously thought safe for aquatic life. Indirect effects included a trophic cascade in which periphyton abundance increased after macroinvertebrate scrapers decreased. Adult emergence dynamics and corresponding terrestrial subsidies were altered at all bifenthrin concentrations tested. Extrapolating these results to the Midwestern stream assessment suggests pervasive ecological effects, with altered emergence dynamics likely in 40% of streams and a trophic cascade in 7% of streams. This study provides new evidence that a common pyrethroid might alter aquatic and terrestrial ecosystem function at the regional scale.

  13. Watershed to Local Scale Characteristics and Function of Intermittent and Ephemeral Streams on Military Lands

    Science.gov (United States)

    2015-07-31

    stream types in riparian plant community composition ( PerMANOVA ) and compositional variance (PermDISP...111 Table 5-3. Pairwise comparisons for differences in riparian plant community composition ( PerMANOVA ) among...multidimensional scaling ordination PerManova = permutational multivariate analysis of variance PC-Ord = computer program for multivariate statistics

  14. Composition and structure of the Chironomidae (Insecta: Diptera) community associated with bryophytes in a first-order stream in the Atlantic forest, Brazil.

    Science.gov (United States)

    Rosa, B F J V; Dias-Silva, M V D; Alves, R G

    2013-02-01

    This study describes the structure of the Chironomidae community associated with bryophytes in a first-order stream located in a biological reserve of the Atlantic Forest, during two seasons. Samples of bryophytes adhered to rocks along a 100-m stretch of the stream were removed with a metal blade, and 200-mL pots were filled with the samples. The numerical density (individuals per gram of dry weight), Shannon's diversity index, Pielou's evenness index, the dominance index (DI), and estimated richness were calculated for each collection period (dry and rainy). Linear regression analysis was employed to test the existence of a correlation between rainfall and the individual's density and richness. The high numerical density and richness of Chironomidae taxa observed are probably related to the peculiar conditions of the bryophyte habitat. The retention of larvae during periods of higher rainfall contributed to the high density and richness of Chironomidae larvae. The rarefaction analysis showed higher richness in the rainy season related to the greater retention of food particles. The data from this study show that bryophytes provide stable habitats for the colonization by and refuge of Chironomidae larvae, mainly under conductions of faster water flow and higher precipitation.

  15. The influence of Glyceria maxima and nitrate input on the composition and nitrate metabolism of the dissimilatory nitrate-reducing bacterial community

    NARCIS (Netherlands)

    Nijburg, J.W.; Laanbroek, H.J.

    1997-01-01

    The influence of nitrate addition and the presence of Glyceria maxima (reed sweetgrass) on the composition and nitrate metabolism of the dissimilatory nitrate-reducing bacterial community was investigated. Anoxic freshwater sediment was incubated in pots with or without G. maxima and with or without

  16. ADAPTIVE STREAMING OVER HTTP (DASH UNTUK APLIKASI VIDEO STREAMING

    Directory of Open Access Journals (Sweden)

    I Made Oka Widyantara

    2015-12-01

    Full Text Available This paper aims to analyze Internet-based streaming video service in the communication media with variable bit rates. The proposed scheme on Dynamic Adaptive Streaming over HTTP (DASH using the internet network that adapts to the protocol Hyper Text Transfer Protocol (HTTP. DASH technology allows a video in the video segmentation into several packages that will distreamingkan. DASH initial stage is to compress the video source to lower the bit rate video codec uses H.26. Video compressed further in the segmentation using MP4Box generates streaming packets with the specified duration. These packages are assembled into packets in a streaming media format Presentation Description (MPD or known as MPEG-DASH. Streaming video format MPEG-DASH run on a platform with the player bitdash teritegrasi bitcoin. With this scheme, the video will have several variants of the bit rates that gave rise to the concept of scalability of streaming video services on the client side. The main target of the mechanism is smooth the MPEG-DASH streaming video display on the client. The simulation results show that the scheme based scalable video streaming MPEG-DASH able to improve the quality of image display on the client side, where the procedure bufering videos can be made constant and fine for the duration of video views

  17. Fish movement in an Atlantic Forest stream

    Directory of Open Access Journals (Sweden)

    Rosana Mazzoni

    2018-03-01

    Full Text Available ABSTRACT Given the importance of fish movement to the dynamics and maintenance of stream dwelling fish communities from the Atlantic Forest, we analysed patterns of fish movement in a coastal stream from Southeastern Brazil, using mark-recapture technique. Displacement distance of each species were presented and discussed considering seasonal (rainy and dry and body size patterns. We marked 10 species along the stream and recaptured 440 (34.6% of the 1,270 marked fishes. The species with significant number of upstream moving individuals were Astyanax janeiroensis, Characidium interruptum, Astyanax hastatus, Parotocinclus maculicauda and Awaous tajasica. Only Pimelodella lateristriga presented significant differences between resident and moving individuals. Characidium interruptum and A. tajasica demonstrated greater downstream and upstream movement, respectively, moving up to 2,100 m. Even after controlling for species identity we found no significant correlation between fish length and individual displacement distance. Fishes moved longer distances during the rainy season, in accordance to the breeding season. Patterns of fish movement were in agreement to life-history traits of many of the studied species and can be reflecting specific behaviour and morphologies.

  18. Mayflies, stoneflies, and caddisflies of streams and marshes of Indiana Dunes National Lakeshore, USA

    Science.gov (United States)

    DeWalt, R. Edward; South, Eric J.; Robertson, Desiree R.; Marburger, Joy E.; Smith, Wendy W.; Brinson, Victoria

    2016-01-01

    Abstract United States National Parks have protected natural communities for one hundred years. Indiana Dunes National Lakeshore (INDU) is a park unit along the southern boundary of Lake Michigan in Indiana, USA. An inventory of 19 sites, consisting of a seep, 12 streams, four marshes, a bog, and a fen were examined for mayflies (Ephemeroptera), stoneflies (Plecoptera), and caddisflies (Trichoptera) (EPT taxa). Volunteers and authors collect 35 ultraviolet light traps during summer 2013 and supplementary benthic and adult sampling added species not attracted by lights or that were only present in colder months. Seventy-eight EPT species were recovered: 12 mayflies, two stoneflies, and 64 caddisflies. The EPT richness found at INDU was a low proportion of the number of species known from Indiana: caddisflies contributed only 32.7% of known state fauna, mayflies and stoneflies contributed 8.4% and 2.3%, respectively. Site EPT richness ranged from one for a seep to 34 for an 8 m-wide stream. Richness in streams generally increased with stream size. Seven new state records and rare species are reported. The number of EPT species at INDU is slightly larger than that found at Isle Royale National Park in 2013, and the community composition and evenness between orders were different. PMID:26877693

  19. Metabolic and phylogenetic analysis of microbial communities during phytoremediation of soil contaminated with weathered hydrocarbons and heavy metals.

    Science.gov (United States)

    Palmroth, Marja R T; Koskinen, Perttu E P; Kaksonen, Anna H; Münster, Uwe; Pichtel, John; Puhakka, Jaakko A

    2007-12-01

    In the current study, the microbial ecology of weathered hydrocarbon and heavy metal contaminated soil undergoing phytoremediation was studied. The relationship of functional diversity, measured as carbon source utilisation in Biolog plates and extracellular enzymatic activities, and genetic diversity of bacteria was evaluated. Denaturing gradient gel electrophoresis was used for community analyses at the species level. Bulk soil and rhizosphere soil from pine and poplar plantations were analysed separately to determine if the plant rhizosphere impacted hydrocarbon degradation. Prevailing microbial communities in the field site were both genetically and metabolically diverse. Furthermore, both tree rhizosphere and fertilisation affected the compositions of these communities and increased activities of extracellular aminopeptidases. In addition, the abundance of alkane hydroxylase and naphthalene dioxygenase genes in the communities was low, but the prevalence of these genes was increased by the addition of bioavailable hydrocarbons. Tree rhizosphere communities had greater hydrocarbon degradation potential than those of bulk soil. Hydrocarbon utilising communities were dominated generally by the species Ralstonia eutropha and bacteria belonging to the genus Burkholderia. Despite the presence of viable hydrocarbon-degrading microbiota, decomposition of hydrocarbons from weathered hydrocarbon contaminated soil over four years, regardless of the presence of vegetation, was low in unfertilised soil. Compost addition enhanced the removal of hydrocarbons.

  20. Factors that Influence Learning Satisfaction Delivered by Video Streaming Technology

    Science.gov (United States)

    Keenan, Daniel Stephen

    2010-01-01

    In 2005, over 100,000 e-Learning courses were offered in over half of all U.S. postsecondary education institutions with nearly 90% of all community colleges and four year institutions offering online education. Streaming video is commonplace across the internet offering seamless video and sound anywhere connectivity is available effectively…

  1. Akamai Streaming

    OpenAIRE

    ECT Team, Purdue

    2007-01-01

    Akamai offers world-class streaming media services that enable Internet content providers and enterprises to succeed in today's Web-centric marketplace. They deliver live event Webcasts (complete with video production, encoding, and signal acquisition services), streaming media on demand, 24/7 Webcasts and a variety of streaming application services based upon their EdgeAdvantage.

  2. Invertebrates Associated with Coarse Woody Debris in Streams, Upland Forests, and Wetlands: A Review

    Science.gov (United States)

    A. Braccia; D.P. Batzer

    1999-01-01

    We reviewed literature on the inbvertebrate groups associated with coarse woody debris in forests, streams, and wetlands, and contrasted patterns of invertebrate community development and wood decomposition among ecosystems.

  3. Influence of fertilizer draw solution properties on the process performance and microbial community structure in a side-stream anaerobic fertilizer-drawn forward osmosis – ultrafiltration bioreactor

    KAUST Repository

    Kim, Youngjin

    2017-02-27

    In this study, a side-stream anaerobic fertilizer-drawn forward osmosis (FDFO) and ultrafiltration (UF) membrane bioreactor (MBR) hybrid system was proposed and operated for 55 days. The FDFO performance was first investigated in terms of flux decline with various fertilizers draw solution. Flux decline was very severe with all fertilizers due to the absence of aeration and the sticky property of sludge. Flux recovery by physical cleaning varied significantly amongst tested fertilizers which seriously affected biofouling in FDFO via reverse salt flux (RSF). Besides, RSF had a significant impact on nutrient accumulation in the bioreactor. These results indicated that nutrient accumulation negatively influenced the anaerobic activity. To elucidate these phenomena, bacterial and archaeal community structures were analyzed by pyrosequencing. Results showed that bacterial community structure was affected by fertilizer properties with less impact on archaeal community structure, which resulted in a reduction in biogas production and an increase in nitrogen content.

  4. Ecological attributes of the benthic community and indices of water quality in urban, rural and preserved environments

    Directory of Open Access Journals (Sweden)

    Claudia Eiko Yoshida

    Full Text Available INTRODUCTION: Reference streams are pristine streams, untouched or unaltered by man, it being possible to use their environmental characteristics as quality threshold values. Besides the organic impacts measured via water quality biological monitoring programs, it has become necessary to evaluate the relationship between alterations in the landscape of streams and surrounding areas and changes in the structure of the macroinvertebrate community; AIM: The objective of the present study was to correlate the changes in the landscape with the ecological attributes of the community and indices of water quality, and to recommend reference condition values for the integrity of streams in the region of Jundiai (SP; METHODS: The benthic fauna were sampled in three urban streams, three rural streams and three preserved streams during July 2010, using a Surber-type sampler. The characteristics of the landscape were evaluated by means of Diversity of Habitat; the community, analyzed for several biodiversity indices, and; the water quality assessed using the indices River-BCI, BMWP-CETEC (CETEC - Science and Technology Center, ASPT and SOMI (SOMI - Serra dos Órgãos Multimetric Index (Serra dos Órgãos is a mountain range national park in the state of Rio de Janeiro; RESULTS: The structure and the composition of the communities varied according to the stream and this was reflected in the values of the biological and environmental quality indices. The best conditions were found in preserved streams, intermediate streams and rural streams while the worst conditions were found in the urban streams. The significant Pearson correlations (r > 0.73 and P < 0.05 between the diversity of habitat index and the ecological and water quality index attributes in the streams of Jundiai demonstrated that diversity of habitat may be a good predictor of the environmental characteristics evaluated.

  5. Continental-scale effects of nutrient pollution on stream ecosystem functioning.

    Science.gov (United States)

    Woodward, Guy; Gessner, Mark O; Giller, Paul S; Gulis, Vladislav; Hladyz, Sally; Lecerf, Antoine; Malmqvist, Björn; McKie, Brendan G; Tiegs, Scott D; Cariss, Helen; Dobson, Mike; Elosegi, Arturo; Ferreira, Verónica; Graça, Manuel A S; Fleituch, Tadeusz; Lacoursière, Jean O; Nistorescu, Marius; Pozo, Jesús; Risnoveanu, Geta; Schindler, Markus; Vadineanu, Angheluta; Vought, Lena B-M; Chauvet, Eric

    2012-06-15

    Excessive nutrient loading is a major threat to aquatic ecosystems worldwide that leads to profound changes in aquatic biodiversity and biogeochemical processes. Systematic quantitative assessment of functional ecosystem measures for river networks is, however, lacking, especially at continental scales. Here, we narrow this gap by means of a pan-European field experiment on a fundamental ecosystem process--leaf-litter breakdown--in 100 streams across a greater than 1000-fold nutrient gradient. Dramatically slowed breakdown at both extremes of the gradient indicated strong nutrient limitation in unaffected systems, potential for strong stimulation in moderately altered systems, and inhibition in highly polluted streams. This large-scale response pattern emphasizes the need to complement established structural approaches (such as water chemistry, hydrogeomorphology, and biological diversity metrics) with functional measures (such as litter-breakdown rate, whole-system metabolism, and nutrient spiraling) for assessing ecosystem health.

  6. Temporal variability in discharge and benthic macroinvertebrate assemblages in a tropical glacier-fed stream

    DEFF Research Database (Denmark)

    Jacobsen, Dean; Andino, Patricio; Calvez, Roger

    2014-01-01

    discharge parameters 3, 6, 9, 21, and 45 d before sampling. The effect of flow (slopes of regressions of faunal metrics vs flow) did not differ among sites, but the amount of variation explained by flow was significant only at the 2 downstream sites. Little synchrony was found in variability among sites......-fed stream, a prerequisite for subsequent predictions of consequences of tropical glacier melting on diversity, composition, and stability of stream communities....

  7. Tracing biofouling to the structure of the microbial community and its metabolic products: a study of the three-stage MBR process.

    Science.gov (United States)

    Gao, Dawen; Fu, Yuan; Ren, Nanqi

    2013-11-01

    The biofouling characteristics of a sequential anoxic/aerobic-membrane bioreactor (A/O MBR) were analyzed during the three-stage process (fast-slow-fast transmembrane pressure (TMP) increasing). The results indicated: during the stage 1 (before day 1), the microbial communities in the activated sludge (AS), cake sludge (CS) and biofilm (BF) were similar to each other, and the adsorption of microbes and the metabolic products was the main factor that led to TMP increase; during the stage 2 (between day 1 and day 7), the cake layer begun to form and the TMP continued to rise gradually at a reduced rate compared to stage 1, at this point a characteristic microbial community colonized the CS with microorganisms such as Saprospiraceae and Comamonadaceae thriving on the membrane surface (BF) probably due to greater nutrient availability, and the predominance of these species in the microbial population led to the accumulation of biofouling metabolic products in the CS, which resulted in membrane fouling and the associated rise in TMP; during the final stage (after day 7), the biofilm had matured, and the activity of anaerobes stimulated cake compaction. The statistical analysis showed a correlation between the TMP changing rate and the carbonhydrates of soluble microbial products (SMPc) content in the CS. When the SMPc concentration rose slowly there was a low level of biofouling. However, when the SMPc accumulating rate was greater, it resulted in the more severe biofouling associated with the TMP jump. Furthermore, the correlation coefficient for the TMP increase and protein concentrations of extracellular polymeric substances (EPSp) in the CS was highly significant. The cluster analysis suggested that the AS microbial community remained stable during the three TMP change stages, while the CS and BF community were changed accompanied with the TMP change. The interaction between the microbial communities and the metabolic products lead to the significant correlation

  8. Fish, lower Ivinhema River basin streams, state of Mato Grosso do Sul, Brazil.

    Directory of Open Access Journals (Sweden)

    Súarez, Y. R.

    2008-01-01

    Full Text Available The Ivinhema River basin is one of the main tributaries of the western portion of Paraná River. However,few data are available on the fish communities of its streams. Monthly samples were made in seven streams of the lowerportion of the basin, in the state of Mato Grosso do Sul, using a rectangular sieve 1.2 x 0.8 m, with 2 mm mesh size.Forty-six fish species were found in these streams. The richness estimated according to the bootstrap procedure was 50species. At least two of the captured species were not previously recorded for the upper Paraná basin, indicating theneed of new sampling effort in this region.

  9. Bacterial community composition and extracellular enzyme activity in temperate streambed sediment during drying and rewetting.

    Directory of Open Access Journals (Sweden)

    Elisabeth Pohlon

    Full Text Available Droughts are among the most important disturbance events for stream ecosystems; they not only affect stream hydrology but also the stream biota. Although desiccation of streams is common in Mediterranean regions, phases of dryness in headwaters have been observed more often and for longer periods in extended temperate regions, including Central Europe, reflecting global climate change and enhanced water withdrawal. The effects of desiccation and rewetting on the bacterial community composition and extracellular enzyme activity, a key process in the carbon flow of streams and rivers, were investigated in a typical Central European stream, the Breitenbach (Hesse, Germany. Wet streambed sediment is an important habitat in streams. It was sampled and exposed in the laboratory to different drying scenarios (fast, intermediate, slow for 13 weeks, followed by rewetting of the sediment from the fast drying scenario via a sediment core perfusion technique for 2 weeks. Bacterial community structure was analyzed using CARD-FISH and TGGE, and extracellular enzyme activity was assessed using fluorogenic model substrates. During desiccation the bacterial community composition shifted toward composition in soil, exhibiting increasing proportions of Actinobacteria and Alphaproteobacteria and decreasing proportions of Bacteroidetes and Betaproteobacteria. Simultaneously the activities of extracellular enzymes decreased, most pronounced with aminopeptidases and less pronounced with enzymes involved in the degradation of polymeric carbohydrates. After rewetting, the general ecosystem functioning, with respect to extracellular enzyme activity, recovered after 10 to 14 days. However, the bacterial community composition had not yet achieved its original composition as in unaffected sediments within this time. Thus, whether the bacterial community eventually recovers completely after these events remains unknown. Perhaps this community undergoes permanent changes

  10. Analysis of hydraulic characteristics for stream diversion in small stream

    Energy Technology Data Exchange (ETDEWEB)

    Ahn, Sang-Jin; Jun, Kye-Won [Chungbuk National University, Cheongju(Korea)

    2001-10-31

    This study is the analysis of hydraulic characteristics for stream diversion reach by numerical model test. Through it we can provide the basis data in flood, and in grasping stream flow characteristics. Analysis of hydraulic characteristics in Seoknam stream were implemented by using computer model HEC-RAS(one-dimensional model) and RMA2(two-dimensional finite element model). As a result we became to know that RMA2 to simulate left, main channel, right in stream is more effective method in analysing flow in channel bends, steep slope, complex bed form effect stream flow characteristics, than HEC-RAS. (author). 13 refs., 3 tabs., 5 figs.

  11. Pathways of carbon and energy metabolism of the epibiotic community associated with the deep-sea hydrothermal vent shrimp Rimicaris exoculata.

    Science.gov (United States)

    Hügler, Michael; Petersen, Jillian M; Dubilier, Nicole; Imhoff, Johannes F; Sievert, Stefan M

    2011-01-07

    The shrimp Rimicaris exoculata dominates the faunal biomass at many deep-sea hydrothermal vent sites at the Mid-Atlantic Ridge. In its enlarged gill chamber it harbors a specialized epibiotic bacterial community for which a nutritional role has been proposed. We analyzed specimens from the Snake Pit hydrothermal vent field on the Mid-Atlantic Ridge by complementing a 16S rRNA gene survey with the analysis of genes involved in carbon, sulfur and hydrogen metabolism. In addition to Epsilon- and Gammaproteobacteria, the epibiotic community unexpectedly also consists of Deltaproteobacteria of a single phylotype, closely related to the genus Desulfocapsa. The association of these phylogenetic groups with the shrimp was confirmed by fluorescence in situ hybridization. Based on functional gene analyses, we hypothesize that the Gamma- and Epsilonproteobacteria are capable of autotrophic growth by oxidizing reduced sulfur compounds, and that the Deltaproteobacteria are also involved in sulfur metabolism. In addition, the detection of proteobacterial hydrogenases indicates the potential for hydrogen oxidation in these communities. Interestingly, the frequency of these phylotypes in 16S rRNA gene clone libraries from the mouthparts differ from that of the inner lining of the gill chamber, indicating potential functional compartmentalization. Our data show the specific association of autotrophic bacteria with Rimicaris exoculata from the Snake Pit hydrothermal vent field, and suggest that autotrophic carbon fixation is contributing to the productivity of the epibiotic community with the reductive tricarboxylic acid cycle as one important carbon fixation pathway. This has not been considered in previous studies of carbon fixation and stable carbon isotope composition of the shrimp and its epibionts. Furthermore, the co-occurrence of sulfur-oxidizing and sulfur-reducing epibionts raises the possibility that both may be involved in the syntrophic exchange of sulfur compounds

  12. The metaphors we stream by: Making sense of music streaming

    OpenAIRE

    Hagen, Anja Nylund

    2016-01-01

    In Norway music-streaming services have become mainstream in everyday music listening. This paper examines how 12 heavy streaming users make sense of their experiences with Spotify and WiMP Music (now Tidal). The analysis relies on a mixed-method qualitative study, combining music-diary self-reports, online observation of streaming accounts, Facebook and last.fm scrobble-logs, and in-depth interviews. By drawing on existing metaphors of Internet experiences we demonstrate that music-streaming...

  13. Metabolic biomarkers in community obese children: effect of obstructive sleep apnea and its treatment.

    Science.gov (United States)

    Alonso-Álvarez, María Luz; Terán-Santos, Joaquin; Gonzalez Martinez, Mónica; Cordero-Guevara, José Aurelio; Jurado-Luque, María José; Corral-Peñafiel, Jaime; Duran-Cantolla, Joaquin; Ordax Carbajo, Estrella; MasaJimenez, Fernando; Kheirandish-Gozal, Leila; Gozal, David

    2017-09-01

    Obesity and obstructive sleep apnea in children have been associated with metabolic morbidities. The present study aimed to evaluate the presence of metabolic alterations among obese children recruited from the community, with and without obstructive sleep apnea syndrome (OSAS), and the impact of treatment of OSAS on metabolic profiles. A cross-sectional, prospective, multicenter study of Spanish children aged 3-14 years with a body mass index (BMI) ≥95th percentile for age and sex were randomly selected in the first phase. Four groups emerged for follow-up: (1) no treatment; (2) dietary intervention; (3) surgical treatment of OSA; and (4) continuous positive airway pressure (CPAP) treatment of OSA. Fasting blood tests were performed at baseline (T0) and approximately one year after the intervention (T1). A total of 113 obese children with a mean age of 11.3 ± 2.9 years completed T0 and T1 assessments. Their mean BMI z-score at T1 was 1.34 ± 0.59, and mean Respiratory Disturbance Index was 8.6 ± 13.0 at T0 and 3.3 ± 4.0/hour total sleep time at T1. Only glucose fasting levels differed among metabolic parameters in obese children with OSAS and without OSAS at baseline (T0) (p = 0.018). There were statistically significant differences between surgically treated OSAS (p = 0.002), and CPAP-treated OSAS (p = 0.024) versus the non-OSAS group in the glucose levels between baseline (T0) and follow-up (T1) after controlling for age and change in BMI. Significant univariate associations between BMI and C-reactive protein, insulin, and homeostasis model assessment of insulin resistance emerged at both T0 and T1. Concurrent obesity and OSAS could promote metabolic and inflammatory alterations, and the latter appeared to be sensitive to OSAS treatment outcomes. ClinicalTrials.gov Identifier: NCT01322763. Copyright © 2017 Elsevier B.V. All rights reserved.

  14. Chapter B. Physical, Chemical, and Biological Responses of Streams to Increasing Watershed Urbanization in the Piedmont Ecoregion of Georgia and Alabama, 2003

    Science.gov (United States)

    Gregory, M. Brian; Calhoun, Daniel L.

    2007-01-01

    As part of the U.S. Geological Survey National Water-Quality Assessment Program?s effort to assess the physical, chemical, and biological responses of streams to urbanization, 30 wadable streams were sampled near Atlanta, Ga., during 2002?2003. Watersheds were selected to minimize natural factors such as geology, altitude, and climate while representing a range of urban development. A multimetric urban intensity index was calculated using watershed land use, land cover, infrastructure, and socioeconomic variables that are highly correlated with population density. The index was used to select sites along a gradient from low to high urban intensity. Response variables measured include stream hydrology and water temperature, instream habitat, field properties (pH, conductivity, dissolved oxygen, turbidity), nutrients, pesticides, suspended sediment, sulfate, chloride, Escherichia coli (E. coli) concentrations, and characterization of algal, invertebrate and fish communities. In addition, semipermeablemembrane devices (SPMDs)?passive samplers that concentrate hydrophobic organic contaminants such as polycyclicaromatic hydrocarbons (PAHs)?were used to evaluate water-quality conditions during the 4 weeks prior to biological sampling. Changes in physical, chemical, and biological conditions were evaluated using both nonparametric correlation analysis and nonmetric multidimensional scaling (MDS) ordinations and associated comparisons of dataset similarity matrices. Many of the commonly reported effects of watershed urbanization on streams were observed in this study, such as altered hydrology and increases in some chemical constituent levels. Analysis of water-chemistry data showed that specific conductance, chloride, sulfate, and pesticides increased as urbanization increased. Nutrient concentrations were not directly correlated to increases in development, but were inversely correlated to percent forest in the watershed. Analyses of SPMD-derived data showed that

  15. Evaluation of stream ecological integrity using litter decomposition and benthic invertebrates

    Energy Technology Data Exchange (ETDEWEB)

    Castela, Jose [Departamento de Zoologia and IMAR-CIC, Universidade de Coimbra, Largo Marques de Pombal, 3004-517 Coimbra (Portugal)], E-mail: jcccastela@gmail.com; Ferreira, Veronica [Departamento de Zoologia and IMAR-CIC, Universidade de Coimbra, Largo Marques de Pombal, 3004-517 Coimbra (Portugal)], E-mail: veronica@ci.uc.pt; Graca, Manuel A.S. [Departamento de Zoologia and IMAR-CIC, Universidade de Coimbra, Largo Marques de Pombal, 3004-517 Coimbra (Portugal)], E-mail: mgraca@ci.uc.pt

    2008-05-15

    Biomonitoring programs to access the ecological integrity of freshwaters tend to rely exclusively on structural parameters. Here we evaluated stream ecological integrity using (a) benthic macroinvertebrate derived metrics and a biotic index as measures of structural integrity and (b) oak litter decomposition and associated fungal sporulation rates as measures of functional integrity. The study was done at four sites (S1, S2, S3 and S4) along a downstream increasing phosphorus and habitat degradation gradient in a small stream. The biotic index, invertebrate metrics, invertebrate and fungal communities' structure and sporulation rates discriminated upstream and downstream sites. Decomposition rates classified sites S4 and S2 as having a compromised ecosystem functioning. Although both functional and structural approaches gave the same results for the most impacted site (S4), they were complementary for moderately impacted sites (S2 and S3), and we therefore support the need for incorporating functional measures in evaluations of stream ecological integrity. - This study supports the need for incorporating functional measures in evaluations of stream ecological integrity.

  16. Evaluation of stream ecological integrity using litter decomposition and benthic invertebrates

    International Nuclear Information System (INIS)

    Castela, Jose; Ferreira, Veronica; Graca, Manuel A.S.

    2008-01-01

    Biomonitoring programs to access the ecological integrity of freshwaters tend to rely exclusively on structural parameters. Here we evaluated stream ecological integrity using (a) benthic macroinvertebrate derived metrics and a biotic index as measures of structural integrity and (b) oak litter decomposition and associated fungal sporulation rates as measures of functional integrity. The study was done at four sites (S1, S2, S3 and S4) along a downstream increasing phosphorus and habitat degradation gradient in a small stream. The biotic index, invertebrate metrics, invertebrate and fungal communities' structure and sporulation rates discriminated upstream and downstream sites. Decomposition rates classified sites S4 and S2 as having a compromised ecosystem functioning. Although both functional and structural approaches gave the same results for the most impacted site (S4), they were complementary for moderately impacted sites (S2 and S3), and we therefore support the need for incorporating functional measures in evaluations of stream ecological integrity. - This study supports the need for incorporating functional measures in evaluations of stream ecological integrity

  17. Secondary production of benthic insects in three cold-desert streams

    Energy Technology Data Exchange (ETDEWEB)

    Gaines, W.L.

    1987-07-01

    Aquatic insect production was studied in three cold-desert streams in eastern Washington (Douglas Creek, Snively Springs, and Rattlesnake Springs). The size-frequency method was applied to individual taxa to estimate total insect production. production was also assessed for functional groups and trophic levels in each stream. Optioservus sp. (riffle beetles) and Baetis sp. (mayflies) accounted for 72% of the total insect numbers and 50% of the total biomass in Douglas Creek. Baetis sp. accounted for 42% of the total insect numbers and 25% of the total biomass in Snively Springs. Simulium sp. (blackflies) and Baetis sp. comprised 74% of the total insect numbers and 55% of the total biomass in Rattlesnake Springs. Grazer-scrapers (49%) and collectors (48%) were the most abundant functional groups in Douglas Creek. Collectors were the most abundant functional group in Snively Springs and Rattlesnake Springs. Herbivores and detritivores were the most abundant trophic level in Snively Springs and Rattlesnake Springs. Dipterans (midges and blackflies) were the most productive taxa within the study streams, accounting for 40% to 70% of the total community production. Production by collectors and detritivores was the highest of all functional groups and trophic levels in all study streams.

  18. Effects of resource chemistry on the composition and function of stream hyporheic biofilms.

    Science.gov (United States)

    Hall, E.K.; Besemer, K.; Kohl, L.; Preiler, C.; Reidel, K.; Schneider, T.; Wanek, W.; Battin, T.J.

    2012-01-01

    Fluvial ecosystems process large quantities of dissolved organic matter as it moves from the headwater streams to the sea. In particular, hyporheic sediments are centers of high biogeochemical reactivity due to their elevated residence time and high microbial biomass and activity. However, the interaction between organic matter and microbial dynamics in the hyporheic zone remains poorly understood. We evaluated how variance in resource chemistry affected the microbial community and its associated activity in experimentally grown hyporheic biofilms. To do this we fed beech leaf leachates that differed in chemical composition to a series of bioreactors filled with sediment from a sub-alpine stream. Differences in resource chemistry resulted in differences in diversity and phylogenetic origin of microbial proteins, enzyme activity, and microbial biomass stoichiometry. Specifically, increased lignin, phenolics, and manganese in a single leachate resulted in increased phenoloxidase and peroxidase activity, elevated microbial biomass carbon:nitrogen ratio, and a greater proportion of proteins of Betaproteobacteria origin. We used this model system to attempt to link microbial form (community composition and metaproteome) with function (enzyme activity) in order to better understand the mechanisms that link resource heterogeneity to ecosystem function in stream ecosystems.

  19. Effects of resource chemistry on the composition and function of hyporheic stream biofilms

    Directory of Open Access Journals (Sweden)

    Edward eHall

    2012-02-01

    Full Text Available Stream ecosystems process large quantities of dissolved organic matter as it moves from the headwaters to the sea. Interstitial sediments in the hyporheic zone are centers of high biogeochemical reactivity due to their high levels of microbial biomass and activity. However, the interaction between organic matter and microbial dynamics of these systems remains poorly understood. We evaluated how variance in resource chemistry affected the microbial community and its associated activity in experimentally grown interstitial biofilms. Specifically, we fed beech leaf leachates that differed in chemical composition to a series of bioreactors filled with sediment from a sub-alpine stream. Differences in resource chemistry resulted in differences in diversity and phylogenetic origin of microbial proteins, enzyme activity, and microbial biomass stoichiometry. Specifically, increased lignin, phenolics and manganese in a single leachate resulted in increased phenoloxidase and peroxidase activity, elevated microbial biomass carbon:nitrogen ratio, and a greater proportion of proteins of beta-proteobacter origin. We use this model system to link microbial form, (community composition and proteome, with function, (enzyme activity, in an attempt to develop a better understanding of the mechanisms that link resource heterogeneity to ecosystem function in stream ecosystems.

  20. Microbial Biofilm Community Variation in Flowing Habitats: Potential Utility as Bioindicators of Postmortem Submersion Intervals

    Directory of Open Access Journals (Sweden)

    Jennifer M. Lang

    2016-01-01

    Full Text Available Biofilms are a ubiquitous formation of microbial communities found on surfaces in aqueous environments. These structures have been investigated as biomonitoring indicators for stream heath, and here were used for the potential use in forensic sciences. Biofilm successional development has been proposed as a method to determine the postmortem submersion interval (PMSI of remains because there are no standard methods for estimating the PMSI and biofilms are ubiquitous in aquatic habitats. We sought to compare the development of epinecrotic (biofilms on Sus scrofa domesticus carcasses and epilithic (biofilms on unglazed ceramic tiles communities in two small streams using bacterial automated ribosomal intergenic spacer analysis. Epinecrotic communities were significantly different from epilithic communities even though environmental factors associated with each stream location also had a significant influence on biofilm structure. All communities at both locations exhibited significant succession suggesting that changing communities throughout time is a general characteristic of stream biofilm communities. The implications resulting from this work are that epinecrotic communities have distinctive shifts at the first and second weeks, and therefore the potential to be used in forensic applications by associating successional changes with submersion time to estimate a PMSI. The influence of environmental factors, however, indicates the lack of a successional pattern with the same organisms and a focus on functional diversity may be more applicable in a forensic context.

  1. Effects of urban development on stream ecosystems in nine metropolitan study areas across the United States

    Science.gov (United States)

    Coles, James F.; McMahon, Gerard; Bell, Amanda H.; Brown, Larry R.; Fitzpatrick, Faith A.; Scudder Eikenberry, Barbara C.; Woodside, Michael D.; Cuffney, Thomas F.; Bryant, Wade L.; Cappiella, Karen; Fraley-McNeal, Lisa; Stack, William P.

    2012-01-01

    Urban development is an important agent of environmental change in the United States. The urban footprint on the American landscape has expanded during a century and a half of almost continuous development. Eighty percent of Americans now live in metropolitan areas, and the advantages and challenges of living in these developed areas—convenience, congestion, employment, pollution—are part of the day-to-day realities of most Americans. Nowhere are the environmental changes associated with urban development more evident than in urban streams. Contaminants, habitat destruction, and increasing streamflow flashiness resulting from urban development have been associated with the disruption of biological communities, particularly the loss of sensitive aquatic species. Every stream is connected downstream to larger water bodies, including rivers, reservoirs, and ultimately coastal waters. Inputs of chemical contaminants or sediments at any point along the stream can cause degradation downstream with adverse effects on biological communities and on economically valuable resources, such as fisheries and tourism.

  2. Mercury cycling in stream ecosystems. 3. Trophic dynamics and methylmercury bioaccumulation

    Science.gov (United States)

    Chasar, L.C.; Scudder, B.C.; Stewart, A.R.; Bell, A.H.; Aiken, G.R.

    2009-01-01

    Trophic dynamics (community composition and feeding relationships) have been identified as important drivers of methylmercury (MeHg) bioaccumulation in lakes, reservoirs, and marine ecosystems. The relative importance of trophic dynamics and geochemical controls on MeHg bioaccumulation in streams, however, remains poorly characterized. MeHg bioaccumulation was evaluated in eight stream ecosystems across the United States (Oregon, Wisconsin, and Florida) spanning large ranges in climate, landscape characteristics, atmospheric Hg deposition, and stream chemistry. Across all geographic regions and all streams, concentrations of total Hg (THg) in top predator fish and forage fish, and MeHg in invertebrates, were strongly positively correlated to concentrations of filtered THg (FTHg), filtered MeHg (FMeHg), and dissolved organic carbon (DOC); to DOC complexity (as measured by specific ultraviolet absorbance); and to percent wetland in the stream basins. Correlations were strongest for nonurban streams. Although regressions of log[Hg] versus ??15N indicate that Hg in biota increased significantly with increasing trophic position within seven of eight individual streams, Hg concentrations in top predator fish (including cutthroat, rainbow, and brown trout; green sunfish; and largemouth bass) were not strongly influenced by differences in relative trophic position. Slopes of log[Hg] versus ??15N, an indicator of the efficiency of trophic enrichment, ranged from 0.14 to 0.27 for all streams. These data suggest that, across the large ranges in FTHg (0.14-14.2 ng L-1), FMeHg (0.023-1.03 ng L-1), and DOC (0.50-61.0 mg L-1) found in this study, Hg contamination in top predator fish in streams likely is dominated by the amount of MeHg available for uptake at the base of the food web rather than by differences in the trophic position of top predator fish. ?? 2009 American Chemical Society.

  3. The role of species functional traits for distribuitional patterns in lowland stream vegetation

    DEFF Research Database (Denmark)

    Cavalli, Giulia; Baattrup-Pedersen, Annette; Riis, Tenna

    Freshwater ecosystems provide goods and service to human society and invasion is a major threat to them. Plant invasion affect community dynamics, threatens biodiversity and promote biological homogenization. In this study we explore functional traits in three groups of species e.g. invasive...... species, disturbance-tolerant species and rare species in lowland streams. In order to investigate the role of functional traits for species distributional patterns we investigate relationships between a range of species features and species abundance in app. 1,200 stream sites in Denmark covering...

  4. Distribution, Community Composition, and Potential Metabolic Activity of Bacterioplankton in an Urbanized Mediterranean Sea Coastal Zone.

    Science.gov (United States)

    Richa, Kumari; Balestra, Cecilia; Piredda, Roberta; Benes, Vladimir; Borra, Marco; Passarelli, Augusto; Margiotta, Francesca; Saggiomo, Maria; Biffali, Elio; Sanges, Remo; Scanlan, David J; Casotti, Raffaella

    2017-09-01

    Bacterioplankton are fundamental components of marine ecosystems and influence the entire biosphere by contributing to the global biogeochemical cycles of key elements. Yet, there is a significant gap in knowledge about their diversity and specific activities, as well as environmental factors that shape their community composition and function. Here, the distribution and diversity of surface bacterioplankton along the coastline of the Gulf of Naples (GON; Italy) were investigated using flow cytometry coupled with high-throughput sequencing of the 16S rRNA gene. Heterotrophic bacteria numerically dominated the bacterioplankton and comprised mainly Alphaproteobacteria , Gammaproteobacteria , and Bacteroidetes Distinct communities occupied river-influenced, coastal, and offshore sites, as indicated by Bray-Curtis dissimilarity, distance metric (UniFrac), linear discriminant analysis effect size (LEfSe), and multivariate analyses. The heterogeneity in diversity and community composition was mainly due to salinity and changes in environmental conditions across sites, as defined by nutrient and chlorophyll a concentrations. Bacterioplankton communities were composed of a few dominant taxa and a large proportion (92%) of rare taxa (here defined as operational taxonomic units [OTUs] accounting for coastal zones is of critical importance, considering that these areas are highly productive and anthropogenically impacted. Their richness and evenness, as well as their potential activity, are very important to assess ecosystem health and functioning. Here, we investigated bacterial distribution, community composition, and potential metabolic activity in the GON, which is an ideal test site due to its heterogeneous environment characterized by a complex hydrodynamics and terrestrial inputs of varied quantities and quality. Our study demonstrates that bacterioplankton communities in this region are highly diverse and strongly regulated by a combination of different environmental

  5. Chronic condition as a mediator between metabolic syndrome and cognition among community-dwelling older adults: The moderating role of sex.

    Science.gov (United States)

    Foong, Hui Foh; Hamid, Tengku Aizan; Ibrahim, Rahimah; Haron, Sharifah Azizah; Shahar, Suzana

    2017-11-01

    Metabolic syndrome and chronic conditions are significant predictors of cognition; however, few studies have examined how they work together in predicting cognition in old age. Therefore, the present study examines whether a chronic condition mediates the association between metabolic syndrome and cognition. In addition, it discusses the moderating role of sex in the relationships between metabolic syndrome, chronic conditions and cognition. Secondary analysis was carried out of data from the Malaysian national survey that involved 2322 community residents aged 60 years or older in Peninsular Malaysia. Cognition was measured by the digit symbol substitution test. Metabolic syndrome was assessed by five biomarkers: triglyceride, fasting blood sugar, systolic blood pressure, cholesterol ratio and body mass index. Chronic conditions were assessed by self-reported medical history. The structural equation modeling technique was used to analyze the mediation and moderation tests. The number of chronic conditions partially mediated the association between metabolic syndrome and cognition. Men and women did not differ in the relationship between metabolic syndrome and cognition; however, the number of chronic conditions was found to be negatively associated with cognition in older women, but not in men. Metabolic syndrome might increase the likelihood of older adults to suffer from more chronic conditions; these responses might reduce their cognition. To prevent cognitive decline in old age, specific intervention to minimize the number of chronic conditions by reducing their vascular risk factors is warranted, especially among older women. Geriatr Gerontol Int 2017; 17: 1914-1920. © 2017 Japan Geriatrics Society.

  6. American Samoa Watershed and Coastal Community Data Layers, Utulei, Fagaalu, Fatumafuti 2014

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The Data Layers include the following.Flooding: Regions that flood during heavy rainfall.Intermittent Streams: Areas flow as streams during heavy rainfall.Community...

  7. Influence of riparian canopy on macroinvertebrate composition and food habits of juvenile salmonids in several Oregon streams.

    Science.gov (United States)

    William R. Meehan

    1996-01-01

    The community composition of macroinvertebrates and the feeding habits of juvenile salmonids were studied in eight Oregon streams. Benthic, drift, sticky trap, and water trap samples were taken over a 3-year period, along with stomach samples of the fish. Samples were taken in stream reaches with and without riparian canopy. Both main effects—fish diet versus...

  8. [Effects of heavy metals pollution on soil microbial communities metabolism and soil enzyme activities in coal mining area of Tongchuan, Shaanxi Province of Northwest China].

    Science.gov (United States)

    Guo, Xing-Liang; Gu, Jie; Chen, Zhi-Xue; Gao, Hua; Qin, Qing-Jun; Sun, Wei; Zhang, Wei-Juan

    2012-03-01

    This paper studied the metabolism of soil microbes, functions of soil microbial communities, and activities of soil enzymes in a coal mining area of Tongchuan. In the coal mining area, the concentrations of soil Cu, Zn, Cd, and Pb were significantly higher than those in the non-mining area, of which, Cd contributed most to the heavy metals pollution. By adopting Biolog method combining with principal component analysis (PCA) and cluster analysis, it was found that the metabolic characteristics of different soil microbial communities varied significantly with increasing soil heavy metals pollution, and the variation was mainly manifested in the metabolic patterns of carbon sources such as saccharides and amino acids. In slightly and moderately polluted soils, the utilization of carbon sources by soil microbial communities was activated; while in heavily polluted soils, the carbon sources utilization was inhibited. The activities of soil urease, protease, alkaline phosphatase, and catalase all tended to decline with intensifying soil heavy metals pollution. The soil urease, protease, alkaline phosphatase, and catalase activities in the coal mining area were 50.5%-65.1%, 19.1%-57.1%, 87.2%-97.5%, and 77.3%-86.0% higher than those in the non-mining area, respectively. The activities of soil sucrase and cellulase were activated in slightly and moderately polluted soils, but inhibited in heavily polluted soils.

  9. Electrofishing capture probability of smallmouth bass in streams

    Science.gov (United States)

    Dauwalter, D.C.; Fisher, W.L.

    2007-01-01

    Abundance estimation is an integral part of understanding the ecology and advancing the management of fish populations and communities. Mark-recapture and removal methods are commonly used to estimate the abundance of stream fishes. Alternatively, abundance can be estimated by dividing the number of individuals sampled by the probability of capture. We conducted a mark-recapture study and used multiple repeated-measures logistic regression to determine the influence of fish size, sampling procedures, and stream habitat variables on the cumulative capture probability for smallmouth bass Micropterus dolomieu in two eastern Oklahoma streams. The predicted capture probability was used to adjust the number of individuals sampled to obtain abundance estimates. The observed capture probabilities were higher for larger fish and decreased with successive electrofishing passes for larger fish only. Model selection suggested that the number of electrofishing passes, fish length, and mean thalweg depth affected capture probabilities the most; there was little evidence for any effect of electrofishing power density and woody debris density on capture probability. Leave-one-out cross validation showed that the cumulative capture probability model predicts smallmouth abundance accurately. ?? Copyright by the American Fisheries Society 2007.

  10. Decomposition of terrestrial resource subsidies in headwater streams: Does consumer diversity matter?

    Science.gov (United States)

    David Stoker; Amber J. Falkner; Kelly M. Murray; Ashley K. Lang; Thomas R. Barnum; Jeffrey Hepinstall-Cymerman; Michael J. Conroy; Robert J. Cooper; Catherine M. Pringle

    2017-01-01

    Resource subsidies and biodiversity are essential for maintaining community structure and ecosystem functioning, but the relative importance of consumer diversity and resource characteristics to decomposition remains unclear. Forested headwater streams are detritus-based systems, dependent on leaf litter inputs from adjacent riparian ecosystems, and...

  11. Emergent biosynthetic capacity in simple microbial communities.

    Directory of Open Access Journals (Sweden)

    Hsuan-Chao Chiu

    2014-07-01

    Full Text Available Microbes have an astonishing capacity to transform their environments. Yet, the metabolic capacity of a single species is limited and the vast majority of microorganisms form complex communities and join forces to exhibit capabilities far exceeding those achieved by any single species. Such enhanced metabolic capacities represent a promising route to many medical, environmental, and industrial applications and call for the development of a predictive, systems-level understanding of synergistic microbial capacity. Here we present a comprehensive computational framework, integrating high-quality metabolic models of multiple species, temporal dynamics, and flux variability analysis, to study the metabolic capacity and dynamics of simple two-species microbial ecosystems. We specifically focus on detecting emergent biosynthetic capacity--instances in which a community growing on some medium produces and secretes metabolites that are not secreted by any member species when growing in isolation on that same medium. Using this framework to model a large collection of two-species communities on multiple media, we demonstrate that emergent biosynthetic capacity is highly prevalent. We identify commonly observed emergent metabolites and metabolic reprogramming patterns, characterizing typical mechanisms of emergent capacity. We further find that emergent secretion tends to occur in two waves, the first as soon as the two organisms are introduced, and the second when the medium is depleted and nutrients become limited. Finally, aiming to identify global community determinants of emergent capacity, we find a marked association between the level of emergent biosynthetic capacity and the functional/phylogenetic distance between community members. Specifically, we demonstrate a "Goldilocks" principle, where high levels of emergent capacity are observed when the species comprising the community are functionally neither too close, nor too distant. Taken together

  12. StreamCat

    Data.gov (United States)

    U.S. Environmental Protection Agency — The StreamCat Dataset provides summaries of natural and anthropogenic landscape features for ~2.65 million streams, and their associated catchments, within the...

  13. Stream Crossings

    Data.gov (United States)

    Vermont Center for Geographic Information — Physical measurements and attributes of stream crossing structures and adjacent stream reaches which are used to provide a relative rating of aquatic organism...

  14. Metabolic syndrome correlates poorly with cognitive performance in stroke-free community-dwelling older adults: a population-based, cross-sectional study in rural Ecuador.

    Science.gov (United States)

    Del Brutto, Oscar H; Mera, Robertino M; Zambrano, Mauricio

    2016-04-01

    Studies investigating a possible correlation between metabolic syndrome and cognitive decline have been inconsistent. To determine whether metabolic syndrome or each of its components correlate with cognitive performance in community-dwelling older adults in rural Ecuador. Stroke-free Atahualpa residents aged ≥60 years were identified during a door-to-door survey. Metabolic syndrome was defined according to the International Diabetes Federation criteria. Cognition was evaluated by the use of the Montreal Cognitive Assessment (MoCA). Multivariate logistic regression models estimated the association between metabolic syndrome and each of its components with cognitive performance. A total of 212 persons (mean age: 69.2 ± 7.2 years, 64 % women) were enrolled. Of these, 120 (57 %) had metabolic syndrome. Mean scores in the MoCA were 18.2 ± 4.6 for persons with and 19 ± 4.7 for those without metabolic syndrome. In fully adjusted logistic models, MoCA scores were not associated with metabolic syndrome (p = 0.101). After testing individual components of metabolic syndrome with the MoCA score, we found that only hypertriglyceridemia was independently associated with the MoCA score (p = 0.009). This population-based study showed a poor correlation of metabolic syndrome with cognitive performance after adjusting for relevant confounders. Of the individual components of metabolic syndrome, only hypertriglyceridemia correlated with worse cognitive performance.

  15. Economic evaluation of neutral streams and of river construction methods

    International Nuclear Information System (INIS)

    Donat, M.

    1998-12-01

    There are no current markets for the management and restoration of natural streams. However, economic elements tend to play an increasingly important role when it comes to decisions about river management activities. Although preference structures of market consumers can be analyzed using prices, there are several short-comings in using this technique for goods with no or an insufficient market. This is especially true for 'natural streams'. The non-existence of market prices for goods or their parts does not mean that they do not have a value or that there is no preference structure for them. After an introductory discussion of ethical and value issues, specific methods for evaluating and analyzing the willingness-to-pay for natural streams and theirs restoration are developed further. Using direct interview techniques, locals in three different watersheds in Upper Austria are ask for their preferences and social pricing of natural streams and river management options. The areas the interviews were conducted in, represent a watershed dominated by intensive agricultural and residential uses, another watershed typical for a rural community and a third representing a watershed of a relatively pristine river of the Northern Alpine limestone range mainly used by forestry and tourism. Demographic data, eco-morphological stream characteristics and preferences of the interviewed about elements of a natural stream, user and non-user values were linked and analyzed. The results of a personal interviewing technique conducted in these watersheds showed to be capable to capture the preference structure in small watersheds and may offer some help for decision-making concerning river management issues. (author)

  16. Phosphorus dynamics in a woodland stream ecosystem: a study of nutrient spiralling

    International Nuclear Information System (INIS)

    Newbold, J.D.; Elwood, J.W.; O'Neill, R.V.; Sheldon, A.L.

    1983-01-01

    To describe spiralling in Walker Branch, a first-order woodland stream in Tennessee, we released 32 PO 4 to the stream water and measured its uptake from the water and then followed its dynamics in coarse particulate organic matter (CPOM), fine particulate organic matter (FPOM), aufwuchs, grazers, shredders, collectors, net-spinning filter feeders, and predators over a 6-week period. Rates of transfer among compartments and rates of downstream transport were estimated by fitting a partial differential equation model of the ecosystem to the data. With the resulting coefficients, the model was run to steady state to estimate standing stocks and fluxes of exchangeable phosphorus. Phosphorus moved downstream at an average velocity of 10.4 m/d, cycling once every 18.4 d. The average downstream distance associated with one cycle was therefore 190 m (10.4 m/d x 18.4 d). Spiralling length, at steady state, is approximately the ratio of the total downstream flux of phosphorus per unit width of stream (720 mg.d -1 .m -1 ) to the rate of P uptake from the water (3.90 mg.m -2 .d -1 ). CPOM accounted for 60% of the uptake, FPOM for 35%, and aufwuchs for 5%. Turnover times of P in particulates ranged from 5.6 to 6.7 d, except for FPOM, which showed a slower turnover time of 99 d. Of the P uptake from water by particulates, 2.8% was transferred to consumers, while the remainder returned directly to the water. About 30% of the consumer uptake, in turn, was transferred to predators. The small consumer turnover length reflected low consumer uptake of P from particulates and slow downstream drift velocity (0.013 m/d). In spite of the low rate of phosphorus uptake, the combined consumer-and-predator community accounted for 25% of the standing stock of exchangeable P in the stream. The retentiveness of this community is attributable both to the low drift rate and to a long turnover time (152 d) for P within the community

  17. Prioritized Contact Transport Stream

    Science.gov (United States)

    Hunt, Walter Lee, Jr. (Inventor)

    2015-01-01

    A detection process, contact recognition process, classification process, and identification process are applied to raw sensor data to produce an identified contact record set containing one or more identified contact records. A prioritization process is applied to the identified contact record set to assign a contact priority to each contact record in the identified contact record set. Data are removed from the contact records in the identified contact record set based on the contact priorities assigned to those contact records. A first contact stream is produced from the resulting contact records. The first contact stream is streamed in a contact transport stream. The contact transport stream may include and stream additional contact streams. The contact transport stream may be varied dynamically over time based on parameters such as available bandwidth, contact priority, presence/absence of contacts, system state, and configuration parameters.

  18. StreamExplorer: A Multi-Stage System for Visually Exploring Events in Social Streams.

    Science.gov (United States)

    Wu, Yingcai; Chen, Zhutian; Sun, Guodao; Xie, Xiao; Cao, Nan; Liu, Shixia; Cui, Weiwei

    2017-10-18

    Analyzing social streams is important for many applications, such as crisis management. However, the considerable diversity, increasing volume, and high dynamics of social streams of large events continue to be significant challenges that must be overcome to ensure effective exploration. We propose a novel framework by which to handle complex social streams on a budget PC. This framework features two components: 1) an online method to detect important time periods (i.e., subevents), and 2) a tailored GPU-assisted Self-Organizing Map (SOM) method, which clusters the tweets of subevents stably and efficiently. Based on the framework, we present StreamExplorer to facilitate the visual analysis, tracking, and comparison of a social stream at three levels. At a macroscopic level, StreamExplorer uses a new glyph-based timeline visualization, which presents a quick multi-faceted overview of the ebb and flow of a social stream. At a mesoscopic level, a map visualization is employed to visually summarize the social stream from either a topical or geographical aspect. At a microscopic level, users can employ interactive lenses to visually examine and explore the social stream from different perspectives. Two case studies and a task-based evaluation are used to demonstrate the effectiveness and usefulness of StreamExplorer.Analyzing social streams is important for many applications, such as crisis management. However, the considerable diversity, increasing volume, and high dynamics of social streams of large events continue to be significant challenges that must be overcome to ensure effective exploration. We propose a novel framework by which to handle complex social streams on a budget PC. This framework features two components: 1) an online method to detect important time periods (i.e., subevents), and 2) a tailored GPU-assisted Self-Organizing Map (SOM) method, which clusters the tweets of subevents stably and efficiently. Based on the framework, we present Stream

  19. Bottle data collected for chemical analysis along the coastal waters of Hawai'i as part of the Windward Community College Heeia Stream and Kaneohe Bay Water Quality Assessment Project from May 22, 2004 to March 19, 2005 (NODC Accession 0002449)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Measurements of water quality parameters were taken by Windward Community College faculty and students at eight sites in the Heeia Stream and adjacent Kaneohe Bay...

  20. Downstream cumulative effects of land use on freshwater communities

    Science.gov (United States)

    Kuglerová, L.; Kielstra, B. W.; Moore, D.; Richardson, J. S.

    2015-12-01

    Many streams and rivers are subject to disturbance from intense land use such as urbanization and agriculture, and this is especially obvious for small headwaters. Streams are spatially organized into networks where headwaters represent the tributaries and provide water, nutrients, and organic material to the main stems. Therefore perturbations within the headwaters might be cumulatively carried on downstream. Although we know that the disturbance of headwaters in urban and agricultural landscapes poses threats to downstream river reaches, the magnitude and severity of these changes for ecological communities is less known. We studied stream networks along a gradient of disturbance connected to land use intensity, from urbanized watersheds to watersheds placed in agricultural settings in the Greater Toronto Area. Further, we compared the patterns and processes found in the modified watershed to a control watershed, situated in a forested, less impacted landscape. Preliminary results suggest that hydrological modifications (flash floods), habitat loss (drainage and sewer systems), and water quality issues of small streams in urbanized and agricultural watersheds represent major disturbances and threats for aquatic and riparian biota on local as well as larger spatial scales. For example, communities of riparian plants are dominated by species typical of the land use on adjacent uplands as well as the dominant land use on the upstream contributing area, instead of riparian obligates commonly found in forested watersheds. Further, riparian communities in disturbed environments are dominated by invasive species. The changes in riparian communities are vital for various functions of riparian vegetation. Bank erosion control is suppressed, leading to severe channel transformations and sediment loadings in urbanized watersheds. Food sources for instream biota and thermal regimes are also changed, which further triggers alterations of in-stream biological communities

  1. Stream microbial diversity responds to environmental changes: Review and synthesis of existing research

    Directory of Open Access Journals (Sweden)

    Lydia eZeglin

    2015-05-01

    Full Text Available The importance of microbial activity to ecosystem function in aquatic ecosystems is well established, but microbial diversity has been less frequently addressed. This review and synthesis of the hundreds of published studies on stream microbial diversity shows that factors known to drive ecosystem processes, such as nutrient availability, hydrology, metal contamination, contrasting land-use and temperature, also cause heterogeneity in bacterial diversity. Temporal heterogeneity in stream bacterial diversity was frequently observed, reflecting the dynamic nature of both stream ecosystems and microbial community composition. However, within-stream spatial differences in stream bacterial diversity were more commonly observed, driven specifically by different organic matter compartments. Bacterial phyla showed similar patterns in relative abundance with regard to compartment type across different streams. For example, surface water contained the highest relative abundance of Actinobacteria, while epilithon contained the highest relative abundance of Cyanobacteria and Bacteroidetes. This suggests that contrasting physical and/or nutritional habitats characterized by different stream organic matter compartment types may select for certain bacterial lineages. When comparing the prevalence of physicochemical effects on stream bacterial diversity, effects of changing metal concentrations were most, while effects of differences in nutrient concentrations were least frequently observed. This may indicate that although changing nutrient concentrations do tend to affect microbial diversity, other environmental factors are more likely to alter stream microbial diversity and function. The common observation of connections between ecosystem process drivers and microbial diversity suggests that microbial taxonomic turnover could mediate ecosystem-scale responses to changing environmental conditions, including both microbial habitat distribution and

  2. Developing a novel approach to analyse the regimes of temporary streams and their controls on aquatic biota

    Science.gov (United States)

    Gallart, F.; Prat, N.; García-Roger, E. M.; Latron, J.; Rieradevall, M.; Llorens, P.; Barberá, G. G.; Brito, D.; de Girolamo, A. M.; Lo Porto, A.; Neves, R.; Nikolaidis, N. P.; Perrin, J. L.; Querner, E. P.; Quiñonero, J. M.; Tournoud, M. G.; Tzoraki, O.; Froebrich, J.

    2011-10-01

    Temporary streams are those water courses that undergo the recurrent cessation of flow or the complete drying of their channel. The biological communities in temporary stream reaches are strongly dependent on the temporal changes of the aquatic habitats determined by the hydrological conditions. The use of the aquatic fauna structural and functional characteristics to assess the ecological quality of a temporary stream reach can not therefore be made without taking into account the controls imposed by the hydrological regime. This paper develops some methods for analysing temporary streams' aquatic regimes, based on the definition of six aquatic states that summarize the sets of mesohabitats occurring on a given reach at a particular moment, depending on the hydrological conditions: flood, riffles, connected, pools, dry and arid. We used the water discharge records from gauging stations or simulations using rainfall-runoff models to infer the temporal patterns of occurrence of these states using the developed aquatic states frequency graph. The visual analysis of this graph is complemented by the development of two metrics based on the permanence of flow and the seasonal predictability of zero flow periods. Finally, a classification of the aquatic regimes of temporary streams in terms of their influence over the development of aquatic life is put forward, defining Permanent, Temporary-pools, Temporary-dry and Episodic regime types. All these methods were tested with data from eight temporary streams around the Mediterranean from MIRAGE project and its application was a precondition to assess the ecological quality of these streams using the current methods prescribed in the European Water Framework Directive for macroinvertebrate communities.

  3. Trophic structure of macroinvertebrates in tropical pasture streams

    Directory of Open Access Journals (Sweden)

    Bruna Neves da Silveira-Manzotti

    Full Text Available Abstract: Aim The aim of this study was to describe the diet of stream macroinvertebrates and to determine their trophic groups. Methods Invertebrates were sampled with D nets in three pasture streams. They were identified to genus level and submitted to gut content analysis, except for fluid feeders such as hemipterans, to which diet data was obtained from the literature. Trophic groups were determined based on a similarity analysis using the Bray-Curtis similarity coefficient. Results Five trophic groups were defined: fine-detritivores (feed mostly on fine particulate organic matter - FPOM, coarse-detritivores/herbivores (feed mostly on coarse particulate organic matter - CPOM - and plant material, omnivores, specialist-predators (prey upon aquatic insects only, and generalist-predators. Ephemeroptera, Diptera (except Tanypodinae, Coleoptera, and Trichoptera (except Smicridea were detritivores. The caddis Macronema (Trichoptera fed exclusively on plant detritus and Tanypodinae and Smicridea were classified as omnivores. The odonate families Calopterygidae and Gomphidae were classified as specialist-predators, while Macrobrachium (Decapoda, Belostoma, and Limnocoris (Hemiptera were generalist-predators. Conclusions The great quantity and frequency of occurrence of FPOM consumed by most taxa highlight the importance of this food resource for macroinvertebrate communities from tropical streams. Furthermore, observed variations on trophic group assignment for some taxa indicate the generalist and opportunistic nature of these aquatic invertebrates. Such findings reinforce the importance of conducting gut content analysis on macroinvertebrates to understand their role in the structure and functioning of tropical streams.

  4. Pilot-Streaming: Design Considerations for a Stream Processing Framework for High-Performance Computing

    OpenAIRE

    Andre Luckow; Peter Kasson; Shantenu Jha

    2016-01-01

    This White Paper (submitted to STREAM 2016) identifies an approach to integrate streaming data with HPC resources. The paper outlines the design of Pilot-Streaming, which extends the concept of Pilot-abstraction to streaming real-time data.

  5. Linking stream flow and groundwater to avian habitat in a desert riparian system.

    Science.gov (United States)

    Merritt, David M; Bateman, Heather L

    2012-10-01

    Increasing human populations have resulted in aggressive water development in arid regions. This development typically results in altered stream flow regimes, reduced annual flow volumes, changes in fluvial disturbance regimes, changes in groundwater levels, and subsequent shifts in ecological patterns and processes. Balancing human demands for water with environmental requirements to maintain functioning ecosystems requires quantitative linkages between water in streams and ecosystem attributes. Streams in the Sonoran Desert provide important habitat for vertebrate species, including resident and migratory birds. Habitat structure, food, and nest-building materials, which are concentrated in riparian areas, are provided directly or indirectly by vegetation. We measured riparian vegetation, groundwater and surface water, habitat structure, and bird occurrence along Cherry Creek, a perennial tributary of the Salt River in central Arizona, USA. The purpose of this work was to develop an integrated model of groundwater-vegetation-habitat structure and bird occurrence by: (1) characterizing structural and provisioning attributes of riparian vegetation through developing a bird habitat index (BHI), (2) validating the utility of our BHI through relating it to measured bird community composition, (3) determining the riparian plant species that best explain the variability in BHI, (4) developing predictive models that link important riparian species to fluvial disturbance and groundwater availability along an arid-land stream, and (5) simulating the effects of changes in flow regime and groundwater levels and determining their consequences for riparian bird communities. Riparian forest and shrubland vegetation cover types were correctly classified in 83% of observations as a function of fluvial disturbance and depth to water table. Groundwater decline and decreased magnitude of fluvial disturbance caused significant shifts in riparian cover types from riparian forest to

  6. Mechanisms of pollution induced community tolerance in a soil microbial community exposed to Cu

    International Nuclear Information System (INIS)

    Wakelin, Steven; Gerard, Emily; Black, Amanda; Hamonts, Kelly; Condron, Leo; Yuan, Tong; Nostrand, Joy van; Zhou, Jizhong; O'Callaghan, Maureen

    2014-01-01

    Pollution induced community tolerance (PICT) to Cu 2+ , and co-tolerance to nanoparticulate Cu, ionic silver (Ag + ), and vancomycin were measured in field soils treated with Cu 2+ 15 years previously. EC 50 values were determined using substrate induced respiration and correlations made against soil physicochemical properties, microbial community structure, physiological status (qCO 2 ; metabolic quotient), and abundances of genes associated with metal and antibiotic resistance. Previous level of exposure to copper was directly (P  2+ , and also of nanoparticle Cu. However, Cu-exposed communities had no co-tolerance to Ag + and had increased susceptibly to vancomycin. Increased tolerance to both Cu correlated (P  + or vancomycin. • Tolerance not due to shifts in community composition or resistance genes. - Pollution induced community tolerance to Cu was linked with increased metabolic quotient but not changes in community composition or abundance of metal resistance genes in a field soil

  7. The Dark Side of the Mushroom Spring Microbial Mat: Life in the Shadow of Chlorophototrophs. II. Metabolic Functions of Abundant Community Members Predicted from Metagenomic Analyses.

    Science.gov (United States)

    Thiel, Vera; Hügler, Michael; Ward, David M; Bryant, Donald A

    2017-01-01

    Microbial mat communities in the effluent channels of Octopus and Mushroom Springs within the Lower Geyser Basin of Yellowstone National Park have been extensively characterized. Previous studies have focused on the chlorophototrophic organisms of the phyla Cyanobacteria and Chloroflexi . However, the diversity and metabolic functions of the other portion of the community in the microoxic/anoxic region of the mat are poorly understood. We recently described the diverse but extremely uneven microbial assemblage in the undermat of Mushroom Spring based on 16S rRNA amplicon sequences, which was dominated by Roseiflexus members, filamentous anoxygenic chlorophototrophs. In this study, we analyzed the orange-colored undermat portion of the community of Mushroom Spring mats in a genome-centric approach and discuss the metabolic potentials of the major members. Metagenome binning recovered partial genomes of all abundant community members, ranging in completeness from ~28 to 96%, and allowed affiliation of function with taxonomic identity even for representatives of novel and Candidate phyla. Less complete metagenomic bins correlated with high microdiversity. The undermat portion of the community was found to be a mixture of phototrophic and chemotrophic organisms, which use bicarbonate as well as organic carbon sources derived from different cell components and fermentation products. The presence of rhodopsin genes in many taxa strengthens the hypothesis that light energy is of major importance. Evidence for the usage of all four bacterial carbon fixation pathways was found in the metagenome. Nitrogen fixation appears to be limited to Synechococcus spp. in the upper mat layer and Thermodesulfovibrio sp. in the undermat, and nitrate/nitrite metabolism was limited. A closed sulfur cycle is indicated by biological sulfate reduction combined with the presence of genes for sulfide oxidation mainly in phototrophs. Finally, a variety of undermat microorganisms have genes for

  8. The Dark Side of the Mushroom Spring Microbial Mat: Life in the Shadow of Chlorophototrophs. II. Metabolic Functions of Abundant Community Members Predicted from Metagenomic Analyses

    Directory of Open Access Journals (Sweden)

    Vera Thiel

    2017-06-01

    Full Text Available Microbial mat communities in the effluent channels of Octopus and Mushroom Springs within the Lower Geyser Basin of Yellowstone National Park have been extensively characterized. Previous studies have focused on the chlorophototrophic organisms of the phyla Cyanobacteria and Chloroflexi. However, the diversity and metabolic functions of the other portion of the community in the microoxic/anoxic region of the mat are poorly understood. We recently described the diverse but extremely uneven microbial assemblage in the undermat of Mushroom Spring based on 16S rRNA amplicon sequences, which was dominated by Roseiflexus members, filamentous anoxygenic chlorophototrophs. In this study, we analyzed the orange-colored undermat portion of the community of Mushroom Spring mats in a genome-centric approach and discuss the metabolic potentials of the major members. Metagenome binning recovered partial genomes of all abundant community members, ranging in completeness from ~28 to 96%, and allowed affiliation of function with taxonomic identity even for representatives of novel and Candidate phyla. Less complete metagenomic bins correlated with high microdiversity. The undermat portion of the community was found to be a mixture of phototrophic and chemotrophic organisms, which use bicarbonate as well as organic carbon sources derived from different cell components and fermentation products. The presence of rhodopsin genes in many taxa strengthens the hypothesis that light energy is of major importance. Evidence for the usage of all four bacterial carbon fixation pathways was found in the metagenome. Nitrogen fixation appears to be limited to Synechococcus spp. in the upper mat layer and Thermodesulfovibrio sp. in the undermat, and nitrate/nitrite metabolism was limited. A closed sulfur cycle is indicated by biological sulfate reduction combined with the presence of genes for sulfide oxidation mainly in phototrophs. Finally, a variety of undermat

  9. A biological tool to assess flow connectivity in reference temporary streams from the Mediterranean Basin

    Energy Technology Data Exchange (ETDEWEB)

    Cid, N., E-mail: ncid@ub.edu [Grup de Recerca “Freshwater Ecology and Management (FEM)”, Departament d' Ecologia, Universitat de Barcelona, Catalonia (Spain); Verkaik, I. [Grup de Recerca “Freshwater Ecology and Management (FEM)”, Departament d' Ecologia, Universitat de Barcelona, Catalonia (Spain); García-Roger, E.M. [Grup de Recerca “Freshwater Ecology and Management (FEM)”, Departament d' Ecologia, Universitat de Barcelona, Catalonia (Spain); Institut Cavanilles de Biodiversitat i Biologia Evolutiva, Universitat de València (Spain); Rieradevall, M.; Bonada, N. [Grup de Recerca “Freshwater Ecology and Management (FEM)”, Departament d' Ecologia, Universitat de Barcelona, Catalonia (Spain); Sánchez-Montoya, M.M. [Department of Ecology and Hydrology, Regional Campus of International Excellence “Campus Mare Nostrum”—University of Murcia (Spain); Leibniz-Institute of Freshwater Ecology and Inland Fisheries (IGB), Berlin (Germany); Gómez, R.; Suárez, M.L.; Vidal-Abarca, M.R. [Department of Ecology and Hydrology, Regional Campus of International Excellence “Campus Mare Nostrum”—University of Murcia (Spain); Demartini, D.; Buffagni, A.; Erba, S. [Instituto di Ricerca Sulle Acque (CNR-IRSA) (Italy); Karaouzas, I.; Skoulikidis, N. [Hellenic Center for Marine Research (HCMR) (Greece); Prat, N. [Grup de Recerca “Freshwater Ecology and Management (FEM)”, Departament d' Ecologia, Universitat de Barcelona, Catalonia (Spain)

    2016-01-01

    Many streams in the Mediterranean Basin have temporary flow regimes. While timing for seasonal drought is predictable, they undergo strong inter-annual variability in flow intensity. This high hydrological variability and associated ecological responses challenge the ecological status assessment of temporary streams, particularly when setting reference conditions. This study examined the effects of flow connectivity in aquatic macroinvertebrates from seven reference temporary streams across the Mediterranean Basin where hydrological variability and flow conditions are well studied. We tested for the effect of flow cessation on two streamflow indices and on community composition, and, by performing random forest and classification tree analyses we identified important biological predictors for classifying the aquatic state either as flowing or disconnected pools. Flow cessation was critical for one of the streamflow indices studied and for community composition. Macroinvertebrate families found to be important for classifying the aquatic state were Hydrophilidae, Simuliidae, Hydropsychidae, Planorbiidae, Heptageniidae and Gerridae. For biological traits, trait categories associated to feeding habits, food, locomotion and substrate relation were the most important and provided more accurate predictions compared to taxonomy. A combination of selected metrics and associated thresholds based on the most important biological predictors (i.e. Bio-AS Tool) were proposed in order to assess the aquatic state in reference temporary streams, especially in the absence of hydrological data. Although further development is needed, the tool can be of particular interest for monitoring, restoration, and conservation purposes, representing an important step towards an adequate management of temporary rivers not only in the Mediterranean Basin but also in other regions vulnerable to the effects of climate change. - Highlights: • The effect of flow connectivity on macroinvertebrate

  10. Relationships between indicators of acid-base chemistry and fish assemblages in streams of the Great Smoky Mountains National Park

    Science.gov (United States)

    Baldigo, Barry P.; Kulp, Matt A.; Schwartz, John S.

    2018-01-01

    The acidity of many streams in the Great Smoky Mountains National Park (GRSM) has increased significantly since pre-industrial (∼1850) times due to the effects of highly acidic atmospheric deposition in poorly buffered watersheds. Extensive stream-monitoring programs since 1993 have shown that fish and macroinvertebrate assemblages have been adversely affected in many streams across the GRSM. Matching chemistry and fishery information collected from 389 surveys performed at 52 stream sites over a 22-year period were assessed using logistic regression analysis to help inform the U.S. Environmental Protection Agency’s assessment of the environmental impacts of emissions of oxides of nitrogen (NOx) and sulfur (SOx). Numerous logistic equations and associated curves were derived that defined the relations between acid neutralizing capacity (ANC) or pH and different levels of community richness, density, and biomass; and density and biomass of brook trout, rainbow trout, and small prey (minnow) populations in streams of the GRSM. The equations and curves describe the status of fish assemblages in the GRSM under contemporary emission levels and deposition loads of nitrogen (N) and sulfur (S) and provide a means to estimate how newly proposed (and various alternative) target deposition loads, which strongly influence stream ANC, might affect key ecological indicators. Several examples using ANC, community richness, and brook trout density are presented to illustrate the steps needed to predict how future changes in stream chemistry (resulting from different target deposition loads of N and S) will affect the probabilities of observing specific levels of selected biological indicators in GRSM streams. The implications of this study to the regulation of NOx and SOx emissions, water quality, and fisheries management in streams of the GRSM are discussed, but also qualified by the fact that specific examples provided need to be further explored before recommendations

  11. Microbial communities from different subsystems in biological heap leaching system play different roles in iron and sulfur metabolisms.

    Science.gov (United States)

    Xiao, Yunhua; Liu, Xueduan; Ma, Liyuan; Liang, Yili; Niu, Jiaojiao; Gu, Yabing; Zhang, Xian; Hao, Xiaodong; Dong, Weiling; She, Siyuan; Yin, Huaqun

    2016-08-01

    The microbial communities are important for minerals decomposition in biological heap leaching system. However, the differentiation and relationship of composition and function of microbial communities between leaching heap (LH) and leaching solution (LS) are still unclear. In this study, 16S rRNA gene sequencing was used to assess the microbial communities from the two subsystems in ZiJinShan copper mine (Fujian province, China). Results of PCoA and dissimilarity test showed that microbial communities in LH samples were significantly different from those in LS samples. The dominant genera of LH was Acidithiobacillus (57.2 ∼ 87.9 %), while Leptospirillum (48.6 ∼ 73.7 %) was predominant in LS. Environmental parameters (especially pH) were the major factors to influence the composition and structure of microbial community by analysis of Mantel tests. Results of functional test showed that microbial communities in LH utilized sodium thiosulfate more quickly and utilized ferrous sulfate more slowly than those in LS, which further indicated that the most sulfur-oxidizing processes of bioleaching took place in LH and the most iron-oxidizing processes were in LS. Further study found that microbial communities in LH had stronger pyrite leaching ability, and iron extraction efficiency was significantly positively correlated with Acidithiobacillus (dominated in LH), which suggested that higher abundance ratio of sulfur-oxidizing microbes might in favor of minerals decomposition. Finally, a conceptual model was designed through the above results to better exhibit the sulfur and iron metabolism in bioleaching systems.

  12. Benthic invertebrate fauna, small streams

    Science.gov (United States)

    J. Bruce Wallace; S.L. Eggert

    2009-01-01

    Small streams (first- through third-order streams) make up >98% of the total number of stream segments and >86% of stream length in many drainage networks. Small streams occur over a wide array of climates, geology, and biomes, which influence temperature, hydrologic regimes, water chemistry, light, substrate, stream permanence, a basin's terrestrial plant...

  13. Effect of residential development on stream phosphorus dynamics in headwater suburbanizing watersheds of southern Ontario, Canada.

    Science.gov (United States)

    Duval, Tim P

    2018-10-01

    Suburban landscapes are known to have degraded water quality relative to natural settings, including increased total phosphorus (TP) levels; however, the effect of subdivision construction activities on stream TP dynamics are less understood. This study measured TP and its constituents particulate, dissolved organic, and dissolved inorganic phosphorus (PP, DOP, and DIP, respectively) in two headwater streams of contrasting urbanization activity to examine whether the land-use conversion process itself contributed to TP concentrations and export. The nested watershed undergoing significant active residential community construction contained large areas of cleared former agricultural field and associated sediment mounds with elevated soil TP (~1000 mg kg -1 ), and twice as many stormwater management (SWM) ponds than the watershed with completed suburban communities. Daily stream sampling for six months revealed limited differences in TP between urbanized and urbanizing watersheds regardless of season or stream flow condition; however, the forms of TP varied significantly. The proportion of TP as DOP was consistently higher in the urbanizing stream relative to the urban stream, which was in line with significant decreases in DOP concentration as proportion of cleared former agricultural land decreased and density of SWM ponds increased. The DOP, and to a lesser extent DIP and PP, dynamics resulted in a 2.5× greater areal export of TP from a small watershed actively being suburbanized during the study period compared to the larger watershed with greater land urbanized 3-5 years ago. The results of this study suggest stream TP concentrations are relatively unresponsive to active versus established suburban cover, but the forms of TP can be quite different, and the period of home construction can increase phosphorus (P) delivery to and export through nearby streams. This information can aid land managers and urban planners update best management practices to

  14. Inventory of miscellaneous streams

    International Nuclear Information System (INIS)

    Lueck, K.J.

    1995-09-01

    On December 23, 1991, the US Department of Energy, Richland Operations Office (RL) and the Washington State Department of Ecology (Ecology) agreed to adhere to the provisions of the Department of Ecology Consent Order. The Consent Order lists the regulatory milestones for liquid effluent streams at the Hanford Site to comply with the permitting requirements of Washington Administrative Code. The RL provided the US Congress a Plan and Schedule to discontinue disposal of contaminated liquid effluent into the soil column on the Hanford Site. The plan and schedule document contained a strategy for the implementation of alternative treatment and disposal systems. This strategy included prioritizing the streams into two phases. The Phase 1 streams were considered to be higher priority than the Phase 2 streams. The actions recommended for the Phase 1 and 2 streams in the two reports were incorporated in the Hanford Federal Facility Agreement and Consent Order. Miscellaneous Streams are those liquid effluents streams identified within the Consent Order that are discharged to the ground but are not categorized as Phase 1 or Phase 2 Streams. This document consists of an inventory of the liquid effluent streams being discharged into the Hanford soil column

  15. Bright lights, big city: influences of ecological light pollution on reciprocal stream-riparian invertebrate fluxes.

    Science.gov (United States)

    Meyer, Lars A; Sullivan, S Mazeika P

    2013-09-01

    Cities produce considerable ecological light pollution (ELP), yet the effects of artificial night lighting on biological communities and ecosystem function have not been fully explored. From June 2010 to June 2011, we surveyed aquatic emergent insects, riparian arthropods entering the water, and riparian spiders of the family Tetragnathidae at nine stream reaches representing common ambient ELP levels of Columbus, Ohio, USA, streams (low, 0.1-0.5 lux; moderate, 0.6-2.0 lux; high, 2.1-4.0 lux). In August 2011, we experimentally increased light levels at the low- and moderate-treatment reaches to 10-12 lux to represent urban streams exposed to extremely high levels of ELP. Although season exerted the dominant influence on invertebrate fluxes over the course of the year, when analyzed by season, we found that light strongly influenced multiple invertebrate responses. The experimental light addition resulted in a 44% decrease in tetragnathid spider density (P = 0.035), decreases of 16% in family richness (P = 0.040) and 76% in mean body size (P = 0.022) of aquatic emergent insects, and a 309% increase in mean body size of terrestrial arthropods (P = 0.015). Our results provide evidence that artificial light sources can alter community structure and ecosystem function in streams via changes in reciprocal aquatic-terrestrial fluxes of invertebrates.

  16. Time-Based Data Streams: Fundamental Concepts for a Data Resource for Streams

    Energy Technology Data Exchange (ETDEWEB)

    Beth A. Plale

    2009-10-10

    Real time data, which we call data streams, are readings from instruments, environmental, bodily or building sensors that are generated at regular intervals and often, due to their volume, need to be processed in real time. Often a single pass is all that can be made on the data, and a decision to discard or keep the instance is made on the spot. Too, the stream is for all practical purposes indefinite, so decisions must be made on incomplete knowledge. This notion of data streams has a different set of issues from a file, for instance, that is byte streamed to a reader. The file is finite, so the byte stream is becomes a processing convenience more than a fundamentally different kind of data. Through the duration of the project we examined three aspects of streaming data: the first, techniques to handle streaming data in a distributed system organized as a collection of web services, the second, the notion of the dashboard and real time controllable analysis constructs in the context of the Fermi Tevatron Beam Position Monitor, and third and finally, we examined provenance collection of stream processing such as might occur as raw observational data flows from the source and undergoes correction, cleaning, and quality control. The impact of this work is severalfold. We were one of the first to advocate that streams had little value unless aggregated, and that notion is now gaining general acceptance. We were one of the first groups to grapple with the notion of provenance of stream data also.

  17. Asteroid/meteorite streams

    Science.gov (United States)

    Drummond, J.

    The independent discovery of the same three streams (named alpha, beta, and gamma) among 139 Earth approaching asteroids and among 89 meteorite producing fireballs presents the possibility of matching specific meteorites to specific asteroids, or at least to asteroids in the same stream and, therefore, presumably of the same composition. Although perhaps of limited practical value, the three meteorites with known orbits are all ordinary chondrites. To identify, in general, the taxonomic type of the parent asteroid, however, would be of great scientific interest since these most abundant meteorite types cannot be unambiguously spectrally matched to an asteroid type. The H5 Pribram meteorite and asteroid 4486 (unclassified) are not part of a stream, but travel in fairly similar orbits. The LL5 Innisfree meteorite is orbitally similar to asteroid 1989DA (unclassified), and both are members of a fourth stream (delta) defined by five meteorite-dropping fireballs and this one asteroid. The H5 Lost City meteorite is orbitally similar to 1980AA (S type), which is a member of stream gamma defined by four asteroids and four fireballs. Another asteroid in this stream is classified as an S type, another is QU, and the fourth is unclassified. This stream suggests that ordinary chondrites should be associated with S (and/or Q) asteroids. Two of the known four V type asteroids belong to another stream, beta, defined by five asteroids and four meteorite-dropping (but unrecovered) fireballs, making it the most probable source of the eucrites. The final stream, alpha, defined by five asteroids and three fireballs is of unknown composition since no meteorites have been recovered and only one asteroid has an ambiguous classification of QRS. If this stream, or any other as yet undiscovered ones, were found to be composed of a more practical material (e.g., water or metalrich), then recovery of the associated meteorites would provide an opportunity for in-hand analysis of a potential

  18. Impact of Roadway Stormwater Runoff on Microbial Contamination in the Receiving Stream.

    Science.gov (United States)

    Wyckoff, Kristen N; Chen, Si; Steinman, Andrew J; He, Qiang

    2017-09-01

    Stormwater runoff from roadways has increasingly become a regulatory concern for water pollution control. Recent work has suggested roadway stormwater runoff as a potential source of microbial pollutants. The objective of this study was to determine the impact of roadway runoff on the microbiological quality of receiving streams. Microbiological quality of roadway stormwater runoff and the receiving stream was monitored during storm events with both cultivation-dependent fecal bacteria enumeration and cultivation-independent high-throughput sequencing techniques. Enumeration of total coliforms as a measure of fecal microbial pollution found consistently lower total coliform counts in roadway runoff than those in the stream water, suggesting that roadway runoff was not a major contributor of microbial pollutants to the receiving stream. Further characterization of the microbial community in the stormwater samples by 16S ribosomal RNA gene-based high-throughput amplicon sequencing revealed significant differences in the microbial composition of stormwater runoff from the roadways and the receiving stream. The differences in microbial composition between the roadway runoff and stream water demonstrate that roadway runoff did not appear to have a major influence on the stream in terms of microbiological quality. Thus, results from both fecal bacteria enumeration and high-throughput amplicon sequencing techniques were consistent that roadway stormwater runoff was not the primary contributor of microbial loading to the stream. Further studies of additional watersheds with distinct characteristics are needed to validate these findings. Understanding gained in this study could support the development of more effective strategies for stormwater management in sensitive watersheds. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

  19. Effects of Concrete Channels on Stream Biogeochemistry, Maryland Coastal Plain

    Science.gov (United States)

    Prestegaard, K. L.; Gilbert, L.; Phemister, K.

    2005-05-01

    In the 1950's and 60's, extensive networks of cement-lined channels were built in suburban watersheds near Washington, D.C. to convey storm water to downstream locations. These cement-lined stream channels limit interactions between surface and groundwater and they provide sources of alkalinity in Maryland Coastal Plain watersheds that normally have low alkalinity. This project was designed to 1) compare base flow water chemistry in headwater reaches of urban and non-urban streams, and 2) to evaluate downstream changes in water chemistry in channelized urban streams in comparison with non-urban reference streams. During a drought year, headwater streams in both urban and non-urban sites had significant concentrations of Fe(II) that were discharged from groundwater sources and rapidly oxidized by iron-oxidizing bacteria. During a wet year, the concentrations of Fe(II) were higher in headwater urban streams than in the non-urban streams. This suggests that impervious surfaces in headwater urban watersheds prevent the recharge of oxygen-rich waters during storm events, which maintains iron-rich groundwater discharge to the stream. Downstream changes in water chemistry are prominent in cement-lined urban channels because they are associated with distinctive microbial communities. The headwater zones of channelized streams are dominated by iron-ozidizing bacteria, that are replaced downstream by manganese-oxidizing zones, and replaced further downstream by biofilms dominated by photosynthesizing cyanobacteria. The reaches dominated by cyanobacteria exhibit diurnal changes in pH due to uptake of CO2 for photosynthesis. Diurnal changes range from 7.5 to 8.8 in the summer months to 7.0 to 7.5 in the cooler months, indicating both the impact of photosynthesis and the additional source of alkalinity provided by concrete. The dissolved oxygen, pH, and other characteristics of tributaries dominated by cyanobacteria are similar to the water chemistry characteristics observed in

  20. Genome resolved analysis of a premature infant gut microbial community reveals a Varibaculum cambriense genome and a shift towards fermentation-based metabolism during the third week of life.

    Science.gov (United States)

    Brown, Christopher T; Sharon, Itai; Thomas, Brian C; Castelle, Cindy J; Morowitz, Michael J; Banfield, Jillian F

    2013-12-17

    The premature infant gut has low individual but high inter-individual microbial diversity compared with adults. Based on prior 16S rRNA gene surveys, many species from this environment are expected to be similar to those previously detected in the human microbiota. However, the level of genomic novelty and metabolic variation of strains found in the infant gut remains relatively unexplored. To study the stability and function of early microbial colonizers of the premature infant gut, nine stool samples were taken during the third week of life of a premature male infant delivered via Caesarean section. Metagenomic sequences were assembled and binned into near-complete and partial genomes, enabling strain-level genomic analysis of the microbial community.We reconstructed eleven near-complete and six partial bacterial genomes representative of the key members of the microbial community. Twelve of these genomes share >90% putative ortholog amino acid identity with reference genomes. Manual curation of the assembly of one particularly novel genome resulted in the first essentially complete genome sequence (in three pieces, the order of which could not be determined due to a repeat) for Varibaculum cambriense (strain Dora), a medically relevant species that has been implicated in abscess formation.During the period studied, the microbial community undergoes a compositional shift, in which obligate anaerobes (fermenters) overtake Escherichia coli as the most abundant species. Other species remain stable, probably due to their ability to either respire anaerobically or grow by fermentation, and their capacity to tolerate fluctuating levels of oxygen. Metabolic predictions for V. cambriense suggest that, like other members of the microbial community, this organism is able to process various sugar substrates and make use of multiple different electron acceptors during anaerobic respiration. Genome comparisons within the family Actinomycetaceae reveal important differences

  1. Use of functional traits to assess changes in stream fish assemblages across a habitat gradient

    Directory of Open Access Journals (Sweden)

    Mariela Domiciano Ribeiro

    Full Text Available Abstract Functional traits are important for understanding the links between species occurrence and environmental conditions. Identifying these links makes it possible to predict changes in species composition within communities under specific environmental conditions. We used functional traits related to habitat use and trophic ecology in order to assess the changes in fish community composition between streams with varying habitat structure. The relationship between the species traits and habitat characteristics was analyzed using an RLQ ordination analysis. Although species were widely distributed in habitats with different structures, physical conditions did favor some species based on their functional characteristics. Eight functional traits were found to be associated with stream habitat structure, allowing us to identify traits that may predict the susceptibility of fish species to physical habitat degradation.

  2. Reproductive effects assessment of fish in streams on the Oak Ridge Reservation

    International Nuclear Information System (INIS)

    McCracken, M.K.; Ivey, L.J.; Niemela, S.L.; Greeley, M.S. Jr.

    1995-01-01

    The Department of Energy has three large facilities located on the Oak Ridge Reservation Site, the Y-12 Plant, and the Oak Ridge National Laboratory. Several Biological Monitoring and Abatement Programs (BMAP) monitor and assess the effects of these facilities on the aquatic and terrestrial resources of the reservation. One BMAP task concerns the potential role of contaminant-related reproductive dysfunction in shaping the composition of fish communities in creeks draining the facilities. This task addresses specific questions concerning (1) the reproductive competence of adult fish in the streams, and (2) the capacity of fish embryos and fry to survive and develop sequent reproductive cohorts. Evidence for current or potential reproductive impacts in several of the streams include abnormal fecundity at some sites, increased incidences of oocyte atresia, and a marked toxicity of surface water samples from several stream reaches to fish embryos in periodic embryo-larval tests. Recovery of certain of the monitored streams in response to ongoing remedial actions is documented by positive changes over time in many these indicators of reproductive dysfunction. These results suggest that the monitoring of reproductive indicators can be a sensitive tool for assessing the effects of both industrial discharges and remedial activities on the fish resources of receiving streams

  3. Metabolic studies of Hg-203 on chlamydomonas reinhardi

    International Nuclear Information System (INIS)

    Macka, W.; Stehlik, G.; Wihlidal, H.; Washuettl, J.; Bancher, E.

    1977-09-01

    Vegetative cultures of the green algae Chlamydomonas reinhardi WT + in the log-phase reduce mercury(II)-nitrate to elemental mercury which is removed from the cell suspension by the stream of gas bubbling through it. Monomethyl and dimethyl mercury as intermediate metabolic compounds are to be excluded, because none of them could be found in the algae, the nutrient medium or the gas phase. (author)

  4. Reconstructing riverine mesohabitat unit composition using fish community data and an autecology matrix.

    Science.gov (United States)

    Suen, J P; Su, W C

    2010-09-01

    This research proposes a simplified method for estimating the mesohabitat composition that would favour members of a given set of aquatic species. The simulated composition of four types of mesohabitat units (deep pool, shallow pool, deep riffle and shallow riffle) could guide the design of in-stream structures in creating pool-riffle systems with ecological reference. Fish community data and an autecology matrix are used to support the development of a stream mesohabitat simulation based on regression models for reaches in mid to upper-order streams. The fish community-mesohabitat model results constitute a reference condition that can be used to guide stream restoration and ecological engineering decisions aimed at maintaining the natural ecological integrity and diversity of rivers. © 2010 The Authors. Journal compilation © 2010 The Fisheries Society of the British Isles.

  5. Saccharomyces cerevisiae single-copy plasmids for auxotrophy compensation, multiple marker selection, and for designing metabolically cooperating communities [version 1; referees: 2 approved

    Directory of Open Access Journals (Sweden)

    Michael Mülleder

    2016-09-01

    Full Text Available Auxotrophic markers are useful tools in cloning and genome editing, enable a large spectrum of genetic techniques, as well as facilitate the study of metabolite exchange interactions in microbial communities. If unused background auxotrophies are left uncomplemented however, yeast cells need to be grown in nutrient supplemented or rich growth media compositions, which precludes the analysis of biosynthetic metabolism, and which leads to a profound impact on physiology and gene expression. Here we present a series of 23 centromeric plasmids designed to restore prototrophy in typical Saccharomyces cerevisiae laboratory strains. The 23 single-copy plasmids complement for deficiencies in HIS3, LEU2, URA3, MET17 or LYS2 genes and in their combinations, to match the auxotrophic background of the popular functional-genomic yeast libraries that are based on the S288c strain. The plasmids are further suitable for designing self-establishing metabolically cooperating (SeMeCo communities, and possess a uniform multiple cloning site to exploit multiple parallel selection markers in protein expression experiments.

  6. Aeroacoustics of Three-Stream Jets

    Science.gov (United States)

    Henderson, Brenda S.

    2012-01-01

    Results from acoustic measurements of noise radiated from a heated, three-stream, co-annular exhaust system operated at subsonic conditions are presented. The experiments were conducted for a range of core, bypass, and tertiary stream temperatures and pressures. The nozzle system had a fan-to-core area ratio of 2.92 and a tertiary-to-core area ratio of 0.96. The impact of introducing a third stream on the radiated noise for third-stream velocities below that of the bypass stream was to reduce high frequency noise levels at broadside and peak jet-noise angles. Mid-frequency noise radiation at aft observation angles was impacted by the conditions of the third stream. The core velocity had the greatest impact on peak noise levels and the bypass-to-core mass flow ratio had a slight impact on levels in the peak jet-noise direction. The third-stream jet conditions had no impact on peak noise levels. Introduction of a third jet stream in the presence of a simulated forward-flight stream limits the impact of the third stream on radiated noise. For equivalent ideal thrust conditions, two-stream and three-stream jets can produce similar acoustic spectra although high-frequency noise levels tend to be lower for the three-stream jet.

  7. Are the streams of the Sinos River basin of good water quality? Aquatic macroinvertebrates may answer the question

    Directory of Open Access Journals (Sweden)

    L. Bieger

    Full Text Available Macroinvertebrate communities are one of the most used groups in assessments of water quality, since they respond directly to the level of contamination of aquatic ecosystems. The main objective of this study was the assessment of the water quality of the Sinos River basin (Rio Grande do Sul state, Brazil through biotic indices based on the macroinvertebrate community ("Family Biotic Index - FBI", and "Biological Monitoring Working Party Score System - BMWP". Three lower order streams (2nd order were selected in each one of three main regions of the basin. In each stream, the samplings were performed in three reaches (upper, middle, and lower, totalling 27 reaches. Two samplings were carried in each reach over one year (winter and summer. A total of 6,847 macroinvertebrates distributed among 54 families were sampled. The streams from the upper region were of better water quality than the lower region. The water quality did not change between the upper, middle and lower reaches of the streams. However, the upper reaches of the streams were of better water quality in all the regions of the basin. The water quality of the streams did not vary between the summer and the winter. This result demonstrated that water quality may be analysed in both studied seasons (summer and winter using biotic indices. The analysis of the results allows us to conclude that the biotic indices used reflected the changes related to the water quality along the longitudinal gradient of the basin. Thus, aquatic macroinvertebrates were important bioindicators of the water and environmental quality of the streams of the Sinos River basin.

  8. Recovery of Three Arctic Stream Reaches From Experimental Nutrient Enrichment.

    Science.gov (United States)

    Green, A. C.; Benstead, J. P.; Deegan, L. A.; Peterson, B. J.; Bowden, W. B.; Huryn, A. D.; Slavik, K.; Hershey, A. E.

    2005-05-01

    We examined multi-year patterns in community recovery from experimental low-concentration nutrient (N+P and P only) enrichment in three reaches of two Arctic tundra streams (Kuparuk River and Oksrukuyik Creek) on the North Slope of Alaska (USA). Rates of recovery varied among community components and depended on duration of enrichment (2 to 13 consecutive growing seasons). Biomass and C:P ratio of epilithic algae returned to reference levels rapidly (within 2 years), regardless of enrichment duration. Bryophyte cover, which increased greatly after long-term enrichment (>8 years), recovered to reference levels only after 7 years, when a storm scoured most remnant moss in the recovering reach. Persistence of bryophytes slowed recovery rates of insect taxa that had either been positively (e.g., Ephemerella, most chironomid taxa) or negatively (e.g., Orthocladius rivulorum) affected by this shift in dominant primary producer and its consequence for benthic habitat. Growth of Arctic grayling (adults and young-of-year), the top predator, returned to reference rates within two years. Recovery of these Arctic stream ecosystems from nutrient enrichment was consequently controlled largely by interactions between duration of enrichment and physical disturbance, mediated through physical habitat shifts caused by bryophytes.

  9. Academic Self-Concepts in Ability Streams: Considering Domain Specificity and Same-Stream Peers

    Science.gov (United States)

    Liem, Gregory Arief D.; McInerney, Dennis M.; Yeung, Alexander S.

    2015-01-01

    The study examined the relations between academic achievement and self-concepts in a sample of 1,067 seventh-grade students from 3 core ability streams in Singapore secondary education. Although between-stream differences in achievement were large, between-stream differences in academic self-concepts were negligible. Within each stream, levels of…

  10. Solar wind stream interfaces

    International Nuclear Information System (INIS)

    Gosling, J.T.; Asbridge, J.R.; Bame, S.J.; Feldman, W.C.

    1978-01-01

    Measurements aboard Imp 6, 7, and 8 reveal that approximately one third of all high-speed solar wind streams observed at 1 AU contain a sharp boundary (of thickness less than approx.4 x 10 4 km) near their leading edge, called a stream interface, which separates plasma of distinctly different properties and origins. Identified as discontinuities across which the density drops abruptly, the proton temperature increases abruptly, and the speed rises, stream interfaces are remarkably similar in character from one stream to the next. A superposed epoch analysis of plasma data has been performed for 23 discontinuous stream interfaces observed during the interval March 1971 through August 1974. Among the results of this analysis are the following: (1) a stream interface separates what was originally thick (i.e., dense) slow gas from what was originally thin (i.e., rare) fast gas; (2) the interface is the site of a discontinuous shear in the solar wind flow in a frame of reference corotating with the sun; (3) stream interfaces occur at speeds less than 450 km s - 1 and close to or at the maximum of the pressure ridge at the leading edges of high-speed streams; (4) a discontinuous rise by approx.40% in electron temperature occurs at the interface; and (5) discontinuous changes (usually rises) in alpha particle abundance and flow speed relative to the protons occur at the interface. Stream interfaces do not generally recur on successive solar rotations, even though the streams in which they are embedded often do. At distances beyond several astronomical units, stream interfaces should be bounded by forward-reverse shock pairs; three of four reverse shocks observed at 1 AU during 1971--1974 were preceded within approx.1 day by stream interfaces. Our observations suggest that many streams close to the sun are bounded on all sides by large radial velocity shears separating rapidly expanding plasma from more slowly expanding plasma

  11. Stream habitat or water quality - what influences stronger fish and macrozoobenthos biodiversity?

    Czech Academy of Sciences Publication Activity Database

    Adámek, Z.; Jurajda, Pavel

    2001-01-01

    Roč. 1, č. 3 (2001), s. 305-311 ISSN 1642-3593. [Ecohydrology as a tool for restoration of physically degraded fish habitats. Warsaw, 11.06.2001-13.06.2001] Institutional research plan: CEZ:AV0Z6093917 Keywords : stream ecology * water quality * fish communities Subject RIV: EH - Ecology, Behaviour

  12. Influence of eastern hemlock (Tsuga canadensis L.) on fish community structure and function in headwater streams of the Delaware River basin

    Science.gov (United States)

    Ross, R.M.; Bennett, R.M.; Snyder, C.D.; Young, J.A.; Smith, D.R.; Lemarie, D.P.

    2003-01-01

    Hemlock (Tsuga canadensis) forest of the eastern U.S. are in decline due to invasion by the exotic insect hemlock woolly adelgid (Adelges tsugae). Aquatic biodiversity in hemlock ecosystems has not been documented; thus the true impact of the infestation cannot be assessed. We compared ichthyofaunal assemblages and trophic structure of streams draining hemlock and hardwood forests by sampling first- and second-order streams draining 14 paired hemlock and hardwood stands during base flows in July 1997 at the Delaware Water Gap National Recreation Area of Pennsylvania and New Jersey. Over 1400 fish of 15 species and 7 families were collected, but hemlock and hardwood streams individually harbored only one to four species. Brook trout (Salvelinus fontinalis) and brown trout (Salmo trutta) were two to three times as prevalent in hemlock than hardwood streams. Insectivorous fishes occurred in significantly higher proportion in streams of hardwood (0.90) than hemlock (0.46) stands, while piscivores occurred more often in hemlock (0.85) than hardwood (0.54) stands. Functional (trophic) diversity of fishes in hemlock and second-order streams was numerically greater than that of hardwood and first-order streams. Species composition also differed by stream order and terrain type. Biodiversity is threatened at several levels within hemlock ecosystems at risk to the hemlock woolly adelgid in eastern U.S. forests.

  13. Initial response of small ground-dwelling mammals to forest alternative buffers along headwater streams in the Washington Coast Range, USA

    Science.gov (United States)

    Randall J. Wilk; Martin G. Raphael; Christopher S. Nations; Jeffrey D. Ricklefs

    2010-01-01

    We assessed the short-term effects of alternative designs of forested buffer treatments along headwater streams on small ground-dwelling mammals in managed forests in western Washington, USA. Over three summers (one pretreatment and two posttreatment), we trapped 19 mammalian species along 23 streams in the northern Coast Range. We compared faunal communities in...

  14. Stream systems.

    Science.gov (United States)

    Jack E. Williams; Gordon H. Reeves

    2006-01-01

    Restored, high-quality streams provide innumerable benefits to society. In the Pacific Northwest, high-quality stream habitat often is associated with an abundance of salmonid fishes such as chinook salmon (Oncorhynchus tshawytscha), coho salmon (O. kisutch), and steelhead (O. mykiss). Many other native...

  15. Functional trait composition of aquatic plants can serve to disentangle multiple interacting stressors in lowland streams

    Energy Technology Data Exchange (ETDEWEB)

    Baattrup-Pedersen, Annette, E-mail: abp@bios.au.dk [Department of Bioscience, Aarhus University, Vejlsøvej 25, P.O. Box 314, DK-8600 Silkeborg (Denmark); Göthe, Emma [Department of Bioscience, Aarhus University, Vejlsøvej 25, P.O. Box 314, DK-8600 Silkeborg (Denmark); Riis, Tenna [Department of Bioscience, Aarhus University, Ole Worms Allé 1, Building 1135, Room 217, DK-8000 Aarhus C (Denmark); O' Hare, Matthew T. [Centre for Ecology and Hydrology, Bush Estate, Penicuik EH26 0QB (United Kingdom)

    2016-02-01

    Historically, close attention has been paid to negative impacts associated with nutrient loads to streams and rivers, but today hydromorphological alterations are considered increasingly implicated when lowland streams do not achieve good ecological status. Here, we explore if trait-abundance patterns of aquatic plants change along gradients in hydromorphological degradation and eutrophication in lowland stream sites located in Denmark. Specifically, we hypothesised that: i) changes in trait-abundance patterns occur along gradients in hydromorphological degradation and ii) trait-abundance patterns can serve to disentangle effects of eutrophication and hydromorphological degradation in lowland streams reflecting that the mechanisms behind changes differ. We used monitoring data from a total of 147 stream reaches with combined data on aquatic plant species abundance, catchment land use, hydromorphological alterations (i.e. planform, cross section, weed cutting) and water chemistry parameters. Traits related to life form, dispersal, reproduction and survival together with ecological preference values for nutrients and light (Ellenberg N and L) were allocated to 41 species representing 79% of the total species pool. We found clear evidence that habitat degradation (hydromorphological alterations and eutrophication) mediated selective changes in the trait-abundance patterns of the plant community. Specific traits could distinguish hydromorphological degradation (free-floating, surface; anchored floating leaves; anchored heterophylly) from eutrophication (free-floating, submerged; leaf area). We provide a conceptual framework for interpretation of how eutrophication and hydromorphological degradation interact and how this is reflected in trait-abundance patterns in aquatic plant communities in lowland streams. Our findings support the merit of trait-based approaches in biomonitoring as they shed light on mechanisms controlling structural changes under environmental

  16. Functional trait composition of aquatic plants can serve to disentangle multiple interacting stressors in lowland streams

    International Nuclear Information System (INIS)

    Baattrup-Pedersen, Annette; Göthe, Emma; Riis, Tenna; O'Hare, Matthew T.

    2016-01-01

    Historically, close attention has been paid to negative impacts associated with nutrient loads to streams and rivers, but today hydromorphological alterations are considered increasingly implicated when lowland streams do not achieve good ecological status. Here, we explore if trait-abundance patterns of aquatic plants change along gradients in hydromorphological degradation and eutrophication in lowland stream sites located in Denmark. Specifically, we hypothesised that: i) changes in trait-abundance patterns occur along gradients in hydromorphological degradation and ii) trait-abundance patterns can serve to disentangle effects of eutrophication and hydromorphological degradation in lowland streams reflecting that the mechanisms behind changes differ. We used monitoring data from a total of 147 stream reaches with combined data on aquatic plant species abundance, catchment land use, hydromorphological alterations (i.e. planform, cross section, weed cutting) and water chemistry parameters. Traits related to life form, dispersal, reproduction and survival together with ecological preference values for nutrients and light (Ellenberg N and L) were allocated to 41 species representing 79% of the total species pool. We found clear evidence that habitat degradation (hydromorphological alterations and eutrophication) mediated selective changes in the trait-abundance patterns of the plant community. Specific traits could distinguish hydromorphological degradation (free-floating, surface; anchored floating leaves; anchored heterophylly) from eutrophication (free-floating, submerged; leaf area). We provide a conceptual framework for interpretation of how eutrophication and hydromorphological degradation interact and how this is reflected in trait-abundance patterns in aquatic plant communities in lowland streams. Our findings support the merit of trait-based approaches in biomonitoring as they shed light on mechanisms controlling structural changes under environmental

  17. Variable responses of fish assemblages, habitat, and stability to natural-channel-design restoration in Catskill Mountain streams

    Science.gov (United States)

    Baldigo, Barry P.; Ernst, Anne G.; Warren, Dana R.; Miller, Sarah J.

    2010-01-01

    Natural-channel-design (NCD) restorations were recently implemented within large segments of five first- and second-order streams in the Catskill Mountains of New York in an attempt to increase channel stability, reduce bed and bank erosion, and sustain water quality. In conjunction with these efforts, 54 fish and habitat surveys were done from 1999 to 2007 at six restored reaches and five stable control reaches to evaluate the effects of NCD restoration on fish assemblages, habitat, and bank stability. A before–after–control–impact study design and two-factor analysis of variance were used to quantify the net changes in habitat and fish population and community indices at treatment reaches relative to those at unaltered control reaches. The density and biomass of fish communities were often dominated by one or two small prey species and no or few predator species before restoration and by one or more trout (Salmonidae) species after restoration. Significant increases in community richness (30%), diversity (40%), species or biomass equitability (32%), and total biomass (up to 52%) in at least four of the six restored reaches demonstrate that NCD restorations can improve the health and sustainability of fish communities in geomorphically unstable Catskill Mountain streams over the short to marginally long term. Bank stability, stream habitat, and trout habitat suitability indices (HSIs) generally improved significantly at the restored reaches, but key habitat features and trout HSIs did not change or decreased at two of them. Fish communities and trout populations at these two reaches were not positively affected by NCD restorations. Though NCD restorations often had a positive effect on habitat and fish communities, our results show that the initial habitat conditions limit the relative improvements than can be achieved, habitat quality and stability do not necessarily respond in unison, and biotic and abiotic responses cannot always be generalized.

  18. Headwater biodiversity among different levels of stream habitat hierarchy

    DEFF Research Database (Denmark)

    Göthe, Emma; Friberg, Nikolai; Kahlert, Maria

    2014-01-01

    of a- and b-diversity to y-diversity between two levels of stream habitat hierarchy (catchment and region level). The relationship between species community structure and local environmental factors was also assessed. Our results show that both a- and b-diversity made a significant contribution to y......-diversity. b-diversity remained relatively constant between the two levels of habitat hierarchy even though local environmental control of the biota decreased from the catchment to the region level. To capture most of headwater y-diversity, management should therefore target sites that are locally diverse......, but at the same time select sites so that b-diversity is maximized. As environmental control of the biota peaked at the catchment level, the conservation of headwater stream diversity is likely to be most effective when management targets environmental conditions across multiple local sites within relatively...

  19. A Streams-Based Framework for Defining Location-Based Queries

    DEFF Research Database (Denmark)

    Jensen, Christian Søndergaard; Xuegang, Huang

    2007-01-01

    n infrastructure is emerging that supports the delivery of on-line, location-enabled services to mobile users. Such services involve novel database queries, and the database research community is quite active in proposing techniques for the efficient processing of such queries. In parallel to this......, the management of data streams has become an active area of research. While most research in mobile services concerns performance issues, this paper aims to establish a formal framework for defining the semantics of queries encountered in mobile services, most notably the so-called continuous queries...... that are particularly relevant in this context. Rather than inventing an entirely new framework, the paper proposes a framework that builds on concepts from data streams and temporal databases. Definitions of example queries demonstrates how the framework enables clear formulation of query semantics and the comparison...

  20. PROXY-BASED PATCHING STREAM TRANSMISSION STRATEGY IN MOBILE STREAMING MEDIA SYSTEM

    Institute of Scientific and Technical Information of China (English)

    Liao Jianxin; Lei Zhengxiong; Ma Xutao; Zhu Xiaomin

    2006-01-01

    A mobile transmission strategy, PMPatching (Proxy-based Mobile Patching) transmission strategy is proposed, it applies to the proxy-based mobile streaming media system in Wideband Code Division Multiple Access (WCDMA) network. Performance of the whole system can be improved by using patching stream to transmit anterior part of the suffix that had been played back, and by batching all the demands for the suffix arrived in prefix period and patching stream transmission threshold period. Experimental results show that this strategy can efficiently reduce average network transmission cost and number of channels consumed in central streaming media server.

  1. Response of herbaceous plant community diversity and composition to overstorey harvest within riparian management zones in Northern Hardwoods

    Science.gov (United States)

    Eric K. Zenner; Michelle A. Martin; Brian J. Palik; Jerilynn E. Peck; Charles R. Blinn

    2013-01-01

    Partial timber harvest within riparian management zones (RMZs) may permit active management of riparian forests while protecting stream ecosystems, but impacts on herbaceous communities are poorly understood. We compared herbaceous plant community abundance, diversity and composition in RMZs along small streams in northern Minnesota, USA, among four treatments before...

  2. Making metabolism accessible and meaningful: is the definition of a central metabolic dogma within reach?

    Science.gov (United States)

    LaRossa, Robert A

    2015-04-01

    Intermediary metabolism, a dominant research area before the emergence of molecular biology, is attracting renewed interest for fundamental and applied reasons as documented here. Nonetheless, the field may appear to be a thicket precluding entry to all but the most determined. Here we present a metabolic overview that makes this important and fascinating area accessible to a broad range of the molecular biological and biotechnological communities that are being attracted to biological problems crying out for metabolic solutions. This is accomplished by identifying seven key concepts, a so-called metabolic central dogma, that provide a core understanding analogous to the "Central Dogma of Molecular Biology" which focused upon maintenance and flow of genetic information.

  3. USE OF DIATOMS TO ASSES WATER QUALITY OF ANTHROPOGENICALLY MODIFIED MATYSÓWKA STREAM

    Directory of Open Access Journals (Sweden)

    Teresa Noga

    2013-04-01

    Full Text Available Matysówka stream is small, under 6 km long watercourse, which is a right-bank tributary of Strug River. In 2009–2011studies on the subject of diversity of diatom communities using diatom indices IPS, GDI and TDI for water quality assessment were conducted. On the stream 271 diatom taxa were identified, among which: Achnanthidium minutissimum var. minutissimum, Navicula cryptotenella, N. gregaria, N. lanceolata, N. tripunctata, Nitzschia linearis, N. pusilla, N. recta, Planothidium frequentissimum, Rhoicosphenia abbreviata were the most frequent. Middle and lower section of Matysówka stream was characterized by increased concentrations of phosphates, nitrites, ammonium, total phosphorus and nitrogen, BOD5. On the basis of diatom indices IPS and GDI waters were characterized as III–IV quality classes, while the TDI index revealed the worst water quality classes (IV–V.

  4. Effects of coal mining, forestry, and road construction on southern Appalachian stream invertebrates and habitats.

    Science.gov (United States)

    Gangloff, Michael M; Perkins, Michael; Blum, Peter W; Walker, Craig

    2015-03-01

    Coal has been extracted via surface and sub-surface mining for decades throughout the Appalachian Mountains. New interest in ridge-top mining has raised concerns about possible waterway impacts. We examined effects of forestry, mining, and road construction-based disturbance on physico-chemistry and macroinvertebrate communities in east-central Tennessee headwater streams. Although 11 of 30 sites failed Tennessee's biocriteria scoring system, invertebrate richness was moderately high and we did not find significant differences in any water chemistry or habitat parameters between sites with passing and failing scores. However, conductivity and dissolved solid concentrations appeared elevated in the majority of study streams. Principal components (PCs) analysis indicated that six PCs accounted for ~77 % of among-site habitat variability. One PC associated with dissolved oxygen and specific conductance explained the second highest proportion of among-site variability after catchment area. Specific conductance was not correlated with catchment area but was strongly correlated with mining activity. Composition and success of multivariate models using habitat PCs to predict macroinvertebrate metrics was highly variable. PC scores associated with water chemistry and substrate composition were most frequently included in significant models. These results suggest that impacts of historical and current coal mining remain a source of water quality and macroinvertebrate community impairment in this region, but effects are subtle. Our results suggest that surface mining may have chronic and system-wide effects on habitat conditions and invertebrate communities in Cumberland Plateau streams.

  5. Evaluation of the streaming-matrix method for discrete-ordinates duct-streaming calculations

    International Nuclear Information System (INIS)

    Clark, B.A.; Urban, W.T.; Dudziak, D.J.

    1983-01-01

    A new deterministic streaming technique called the Streaming Matrix Hybrid Method (SMHM) is applied to two realistic duct-shielding problems. The results are compared to standard discrete-ordinates and Monte Carlo calculations. The SMHM shows promise as an alternative deterministic streaming method to standard discrete-ordinates

  6. Towards A Streams-Based Framework for Defining Location-Based Queries

    DEFF Research Database (Denmark)

    Huang, Xuegang; Jensen, Christian S.

    2004-01-01

    An infrastructure is emerging that supports the delivery of on-line, location-enabled services to mobile users. Such services involve novel database queries, and the database research community is quite active in proposing techniques for the effi- cient processing of such queries. In parallel...... to this, the management of data streams has become an active area of research. While most research in mobile services concerns performance issues, this paper aims to establish a formal framework for defining the semantics of queries encountered in mobile services, most notably the so-called continuous...... queries that are particularly relevant in this context. Rather than inventing an entirely new framework, the paper proposes a framework that builds on concepts from data streams and temporal databases. Definitions of example queries demonstrates how the framework enables clear formulation of query...

  7. Consequences of variation in stream-landscape connections for stream nitrate retention and export

    Science.gov (United States)

    Handler, A. M.; Helton, A. M.; Grimm, N. B.

    2017-12-01

    Hydrologic and material connections among streams, the surrounding terrestrial landscape, and groundwater systems fluctuate between extremes in dryland watersheds, yet the consequences of this variation for stream nutrient retention and export remain uncertain. We explored how seasonal variation in hydrologic connection among streams, landscapes, and groundwater affect nitrate and ammonium concentrations across a dryland stream network and how this variation mediates in-stream nitrate uptake and watershed export. We conducted spatial surveys of stream nitrate and ammonium concentration across the 1200 km2 Oak Creek watershed in central Arizona (USA). In addition, we conducted pulse releases of a solution containing biologically reactive sodium nitrate, with sodium chloride as a conservative hydrologic tracer, to estimate nitrate uptake rates in the mainstem (Q>1000 L/s) and two tributaries. Nitrate and ammonium concentrations generally increased from headwaters to mouth in the mainstem. Locally elevated concentrations occurred in spring-fed tributaries draining fish hatcheries and larger irrigation ditches, but did not have a substantial effect on the mainstem nitrogen load. Ambient nitrate concentration (as N) ranged from below the analytical detection limit of 0.005 mg/L to 0.43 mg/L across all uptake experiments. Uptake length—average stream distance traveled for a nutrient atom from the point of release to its uptake—at ambient concentration ranged from 250 to 704 m and increased significantly with higher discharge, both across streams and within the same stream on different experiment dates. Vertical uptake velocity and aerial uptake rate ranged from 6.6-10.6 mm min-1 and 0.03 to 1.4 mg N m-2 min-1, respectively. Preliminary analyses indicate potentially elevated nitrogen loading to the lower portion of the watershed during seasonal precipitation events, but overall, the capacity for nitrate uptake is high in the mainstem and tributaries. Ongoing work

  8. Predation Risk versus Pesticide Exposure: Consequences of Fear and Loathing in the Life of Stream Shredders

    Science.gov (United States)

    Pestana, J. T.; Baird, D. J.; Soares, A. M.

    2005-05-01

    Stream invertebrates are exposed to complex stressor regimes including both biotic and abiotic factors. Species living in streams in agricultural landscapes are often subjected to episodic or continuous exposures to low levels of agrochemicals, which may approach or exceed specific substance guidelines. Sublethal effects of pesticides may result in direct effects on organisms (e.g. reduced physiological performance), which may in turn contribute to indirect effects relating to survival (e.g. increased predation risk). Here, we investigate the possibility that predator-release kairomones can act additively with low-level pesticide exposure to reduce physiological performance and survival of stream invertebrates in previously unforeseen ways. Feeding, metabolic and behavioural responses of two shredder insects, the North American stonefly Pteronarcys comstockii and the European caddisfly Sericostoma vittatum were measured under exposure to the insecticide imidacloprid at different levels of indirect predation stress using predator-release kairomones from Brown Trout (Salmo trutta). Pteronarcys feeding was measured in terms of mass of naturally conditioned alder leaf discs consumed over a 6-day and 10 -day period in animals held in cages in stream mesocosms. Pteronarcys feeding was impaired at 1 ppb in the 6-day trial and at 0,5 ppb in the 10-day trial relatively to unexposed controls. Metabolic rate was measured in the lab in terms of oxygen consumption of Pteronarcys. Animals exposed to 0.5 and 1 ppb imidacloprid showed elevated respiratory rates compared to controls. Laboratory experiments with Sericostoma, currently in progress, are examining the separate and combined effects of imidacloprid and predator kairomone on similar endpoints. These preliminary results are discussed in relation to the development of the Mechanistic Unifying Stressor Effects (MUSE) model which can be used to predict combined ecological effects of multiple stressors at the population level.

  9. Metabolic diversity of the heterotrophic microorganisms and potential link to pollution of the Rouge River

    International Nuclear Information System (INIS)

    Tiquia, S.M.

    2010-01-01

    The heterotrophic microbial communities of the Rouge River were tracked using Biolog Ecoplates to understand the metabolic diversity at different temporal and spatial scales, and potential link to river pollution. Site less impacted by anthrophogenic sources (site 1), showed markedly lower metabolic diversity. The only substrates that were utilized in the water samples were carbohydrates. Sites more impacted by anthrophogenic sources (sites 8 and 9) showed higher metabolic diversity. Higher functional diversity was linked to the physico-chemical and biological properties of the water samples (i.e. higher concentrations of DO, DOC, chlorophyll, and bacterial density). Biolog analysis was found to be useful in differentiating metabolic diversity between microbial communities; in determining factors that most influence the separation of communities; and in identifying which substrates were most utilized by the communities. It can also be used as an effective ecological indicator of changes in river function attributable to urbanization and pollution. - BIOLOG differentiated metabolic diversity between microbial communities and can be used as ecological indicator of river function attributable to urbanization and pollution.

  10. Metabolic diversity of the heterotrophic microorganisms and potential link to pollution of the Rouge River

    Energy Technology Data Exchange (ETDEWEB)

    Tiquia, S.M., E-mail: smtiquia@umd.umich.ed [Department of Natural Sciences, University of Michigan, 115F Science Building, Dearborn, MI 48128 (United States)

    2010-05-15

    The heterotrophic microbial communities of the Rouge River were tracked using Biolog Ecoplates to understand the metabolic diversity at different temporal and spatial scales, and potential link to river pollution. Site less impacted by anthrophogenic sources (site 1), showed markedly lower metabolic diversity. The only substrates that were utilized in the water samples were carbohydrates. Sites more impacted by anthrophogenic sources (sites 8 and 9) showed higher metabolic diversity. Higher functional diversity was linked to the physico-chemical and biological properties of the water samples (i.e. higher concentrations of DO, DOC, chlorophyll, and bacterial density). Biolog analysis was found to be useful in differentiating metabolic diversity between microbial communities; in determining factors that most influence the separation of communities; and in identifying which substrates were most utilized by the communities. It can also be used as an effective ecological indicator of changes in river function attributable to urbanization and pollution. - BIOLOG differentiated metabolic diversity between microbial communities and can be used as ecological indicator of river function attributable to urbanization and pollution.

  11. Streaming tearing mode

    Science.gov (United States)

    Shigeta, M.; Sato, T.; Dasgupta, B.

    1985-01-01

    The magnetohydrodynamic stability of streaming tearing mode is investigated numerically. A bulk plasma flow parallel to the antiparallel magnetic field lines and localized in the neutral sheet excites a streaming tearing mode more strongly than the usual tearing mode, particularly for the wavelength of the order of the neutral sheet width (or smaller), which is stable for the usual tearing mode. Interestingly, examination of the eigenfunctions of the velocity perturbation and the magnetic field perturbation indicates that the streaming tearing mode carries more energy in terms of the kinetic energy rather than the magnetic energy. This suggests that the streaming tearing mode instability can be a more feasible mechanism of plasma acceleration than the usual tearing mode instability.

  12. The distribution of copper in stream sediments in an anomalous stream near Steinkopf, Namaqualand

    International Nuclear Information System (INIS)

    De Bruin, D.

    1987-01-01

    Anomalous copper concentrations detected by the regional stream-sediment programme of the Geological Survey was investigated in a stream near Steinkopf, Namaqualand. A follow-up disclosed the presence of malachite mineralization. However, additional stream-sediment samples collected from the 'anomalous' stream revealed an erratic distribution of copper and also that the malachite mineralization had no direct effect on the copper distribution in the stream sediments. Low partial-extraction yields, together with X-ray diffraction analyses, indicated that dispersion is mainly mechanical and that the copper occurs as cations in the lattice of the biotite fraction of the stream sediments. (author). 8 refs., 5 figs., 1 tab

  13. The distribution of copper in stream sediments in an anomalous stream near Steinkopf, Namaqualand

    Energy Technology Data Exchange (ETDEWEB)

    De Bruin, D

    1987-01-01

    Anomalous copper concentrations detected by the regional stream-sediment programme of the Geological Survey was investigated in a stream near Steinkopf, Namaqualand. A follow-up disclosed the presence of malachite mineralization. However, additional stream-sediment samples collected from the 'anomalous' stream revealed an erratic distribution of copper and also that the malachite mineralization had no direct effect on the copper distribution in the stream sediments. Low partial-extraction yields, together with X-ray diffraction analyses, indicated that dispersion is mainly mechanical and that the copper occurs as cations in the lattice of the biotite fraction of the stream sediments. (author). 8 refs., 5 figs., 1 tab.

  14. Macroinvertebrate community change associated with the severity of streamflow alteration

    Science.gov (United States)

    Carlisle, Daren M.; Eng, Kenny; Nelson, S.M.

    2014-01-01

    Natural streamflows play a critical role in stream ecosystems, yet quantitative relations between streamflow alteration and stream health have been elusive. One reason for this difficulty is that neither streamflow alteration nor ecological responses are measured relative to their natural expectations. We assessed macroinvertebrate community condition in 25 mountain streams representing a large gradient of streamflow alteration, which we quantified as the departure of observed flows from natural expectations. Observed flows were obtained from US Geological Survey streamgaging stations and discharge records from dams and diversion structures. During low-flow conditions in September, samples of macroinvertebrate communities were collected at each site, in addition to measures of physical habitat, water chemistry and organic matter. In general, streamflows were artificially high during summer and artificially low throughout the rest of the year. Biological condition, as measured by richness of sensitive taxa (Ephemeroptera, Plecoptera and Trichoptera) and taxonomic completeness (O/E), was strongly and negatively related to the severity of depleted flows in winter. Analyses of macroinvertebrate traits suggest that taxa losses may have been caused by thermal modification associated with streamflow alteration. Our study yielded quantitative relations between the severity of streamflow alteration and the degree of biological impairment and suggests that water management that reduces streamflows during winter months is likely to have negative effects on downstream benthic communities in Utah mountain streams

  15. Design and methods of the Pacific Northwest Stream Quality Assessment (PNSQA), 2015

    Science.gov (United States)

    Sheibley, Rich W.; Morace, Jennifer L.; Journey, Celeste A.; Van Metre, Peter C.; Bell, Amanda H.; Nakagaki, Naomi; Button, Daniel T.; Qi, Sharon L.

    2017-08-25

    In 2015, the U.S. Geological Survey (USGS) National Water-Quality Assessment (NAWQA) project conducted the Pacific Northwest Stream Quality Assessment (PNSQA) to investigate stream quality across the western part of the Pacific Northwest. The goal of the PNSQA was to assess the health of streams in the region by characterizing multiple water-quality factors that are stressors to in-stream aquatic life and by evaluating the relation between these stressors and the condition of biological communities. The effects of urbanization and agriculture on stream quality for the Puget Lowland and Willamette Valley Level III Ecoregions were the focus of this regional study. Findings will help inform the public and policymakers about human and environmental factors that are the most critical in affecting stream quality and, thus, provide insights into possible strategies to protect or improve the health of streams in the region.Land-use data were used in the study to identify and select sites within the region that ranged in levels of urban and agricultural development. A total of 88 sites were selected across the region—69 were on streams that explicitly spanned a range of urban land use in their watersheds, 8 were on streams in agricultural watersheds, and 11 were reference sites with little or no development in their watersheds. Depending on the type of land use, sites were sampled for contaminants, nutrients, and sediment for either a 4- or 10-week period during April, May, and June 2015. This water-quality “index period” was immediately followed with an ecological survey of all sites that included stream habitat, benthic algae, benthic macroinvertebrates, and fish. Additionally, streambed sediment was collected during the ecological survey for analysis of sediment chemistry and toxicity testing.This report provides a detailed description of the specific study components and methods of the PNSQA, including (1) surveys of stream habitat and aquatic biota, (2) discrete

  16. Mining top-k frequent closed itemsets in data streams using sliding window

    International Nuclear Information System (INIS)

    Rehman, Z.; Shahbaz, M.

    2013-01-01

    Frequent itemset mining has become a popular research area in data mining community since the last few years. T here are two main technical hitches while finding frequent itemsets. First, to provide an appropriate minimum support value to start and user need to tune this minimum support value by running the algorithm again and again. Secondly, generated frequent itemsets are mostly numerous and as a result a number of association rules generated are also very large in numbers. Applications dealing with streaming environment need to process the data received at high rate, therefore, finding frequent itemsets in data streams becomes complex. In this paper, we present an algorithm to mine top-k frequent closed itemsets using sliding window approach from streaming data. We developed a single-pass algorithm to find frequent closed itemsets of length between user's defined minimum and maximum- length. To improve the performance of algorithm and to avoid rescanning of data, we have transformed data into bitmap based tree data structure. (author)

  17. A morphological comparison of narrow, low-gradient streams traversing wetland environments to alluvial streams.

    Science.gov (United States)

    Jurmu, Michael C

    2002-12-01

    Twelve morphological features from research on alluvial streams are compared in four narrow, low-gradient wetland streams located in different geographic regions (Connecticut, Indiana, and Wisconsin, USA). All four reaches differed in morphological characteristics in five of the features compared (consistent bend width, bend cross-sectional shape, riffle width compared to pool width, greatest width directly downstream of riffles, and thalweg location), while three reaches differed in two comparisons (mean radius of curvature to width ratio and axial wavelength to width ratio). The remaining five features compared had at least one reach where different characteristics existed. This indicates the possibility of varying morphology for streams traversing wetland areas further supporting the concept that the unique qualities of wetland environments might also influence the controls on fluvial dynamics and the development of streams. If certain morphological features found in streams traversing wetland areas differ from current fluvial principles, then these varying features should be incorporated into future wetland stream design and creation projects. The results warrant further research on other streams traversing wetlands to determine if streams in these environments contain unique morphology and further investigation of the impact of low-energy fluvial processes on morphological development. Possible explanations for the morphology deviations in the study streams and some suggestions for stream design in wetland areas based upon the results and field observations are also presented.

  18. Reprint of Design of synthetic microbial communities for biotechnological production processes.

    Science.gov (United States)

    Jagmann, Nina; Philipp, Bodo

    2014-12-20

    In their natural habitats microorganisms live in multi-species communities, in which the community members exhibit complex metabolic interactions. In contrast, biotechnological production processes catalyzed by microorganisms are usually carried out with single strains in pure cultures. A number of production processes, however, may be more efficiently catalyzed by the concerted action of microbial communities. This review will give an overview of organismic interactions between microbial cells and of biotechnological applications of microbial communities. It focuses on synthetic microbial communities that consist of microorganisms that have been genetically engineered. Design principles for such synthetic communities will be exemplified based on plausible scenarios for biotechnological production processes. These design principles comprise interspecific metabolic interactions via cross-feeding, regulation by interspecific signaling processes via metabolites and autoinducing signal molecules, and spatial structuring of synthetic microbial communities. In particular, the implementation of metabolic interdependencies, of positive feedback regulation and of inducible cell aggregation and biofilm formation will be outlined. Synthetic microbial communities constitute a viable extension of the biotechnological application of metabolically engineered single strains and enlarge the scope of microbial production processes. Copyright © 2014 Elsevier B.V. All rights reserved.

  19. Use of argon to measure gas exchange in turbulent mountain streams

    Science.gov (United States)

    Hall, Robert O., Jr.; Madinger, Hilary L.

    2018-05-01

    Gas exchange is a parameter needed in stream metabolism and trace gas emissions models. One way to estimate gas exchange is via measuring the decline of added tracer gases such as sulfur hexafluoride (SF6). Estimates of oxygen (O2) gas exchange derived from SF6 additions require scaling via Schmidt number (Sc) ratio, but this scaling is uncertain under conditions of high gas exchange via bubbles because scaling depends on gas solubility as well as Sc. Because argon (Ar) and O2 have nearly identical Schmidt numbers and solubility, Ar may be a useful tracer gas for estimating stream O2 exchange. Here we compared rates of gas exchange measured via Ar and SF6 for turbulent mountain streams in Wyoming, USA. We measured Ar as the ratio of Ar : N2 using a membrane inlet mass spectrometer (MIMS). Normalizing to N2 confers higher precision than simply measuring [Ar] alone. We consistently enriched streams with Ar from 1 to 18 % of ambient Ar concentration and could estimate gas exchange rate using an exponential decline model. The mean ratio of gas exchange of Ar relative to SF6 was 1.8 (credible interval 1.1 to 2.5) compared to the theoretical estimate 1.35, showing that using SF6 would have underestimated exchange of Ar. Steep streams (slopes 11-12 %) had high rates of gas exchange velocity normalized to Sc = 600 (k600, 57-210 m d-1), and slope strongly predicted variation in k600 among all streams. We suggest that Ar is a useful tracer because it is easily measured, requires no scaling assumptions to estimate rates of O2 exchange, and is not an intense greenhouse gas as is SF6. We caution that scaling from rates of either Ar or SF6 gas exchange to CO2 is uncertain due to solubility effects in conditions of bubble-mediated gas transfer.

  20. The development of a system to assess the ecological quality of streams based on macroinvertebrates - design of the sampling programme within the AQEM project

    NARCIS (Netherlands)

    Hering, D.; Buffagni, A.; Moog, O.; Sandin, L.; Sommerhäuser, M.; Strubauer, I.; Feld, C.; Johnson, R.; Pinto, P.; Skoulikidis, N.; Verdonschot, P.F.M.; Zahrádková, S.

    2003-01-01

    The EU Water Framework Directive (WFD) requires river assessment systems based on benthic invertebrates. The AQEM project is developing, at a European scale, such a methodology, based on a comparison of communities of reference streams and degraded streams. The project is focussing on three main

  1. Stream mesocosm response sensitivities to simulated ion stress in produced waters from resource extraction activities

    Science.gov (United States)

    To increase the ecological relevance of laboratory exposures intent on determining species sensitivity to ion stress from resource extraction activities we have conducted several stream mesocosm dosing studies that pair single-species and community-level responses in-situ and all...

  2. Estrutura da comunidade de macroinvertebrados bentônicos de um riacho de serra em Itatinga, São Paulo, Brasil Structure of a benthic macroinvertebrates community in a mountain stream in Itatinga, São Paulo, Brazil

    Directory of Open Access Journals (Sweden)

    Ludmilla O. Ribeiro

    2005-09-01

    Full Text Available A comunidade de macroinvertebrados bentônicos de um riacho de terceira ordem foi analisada em duas estações do ano, chuvosa e seca. Substratos artificiais foram amostrados semanalmente, ao longo de 56 dias para a coleta de macroinvertebrados, nas duas estações do ano. A composição da comunidade foi caracterizada por uma baixa diversidade, ou seja, presença de muitas espécies raras e poucas espécies abundantes nas duas estações do ano. Uma alta dominância de Chironomidae (Diptera nas duas estações, seguida de Baetidae (Ephemeroptera e Ancylidae (Mollusca, respectivamente nas estações chuvosa e seca, foi característico. Os resultados obtidos reforçam a grande importância de Chironomidae na comunidade bentônica de riachos e salientam a influência da sazonalidade sobre a estruturação destes organismos.The benthic macroinvertebrates community of a third order stream was studied during the wet and dry seasons. The community was analyzed using artificial substrates sampled weekly during 56 days in each season. The community composition was characterized by low species diversity, with high number of rare species and few abundant species for both seasons. A high dominance of Chinonomidae (Diptera for both seasons, followed by Baetidae (Ephemeroptera and Ancylidae (Mollusca, respectively for the wet and dry seasons, was found. The results reinforced the high importance of Chironomidae and the seasonal effect determining the stream benthic community structure.

  3. InSTREAM: the individual-based stream trout research and environmental assessment model

    Science.gov (United States)

    Steven F. Railsback; Bret C. Harvey; Stephen K. Jackson; Roland H. Lamberson

    2009-01-01

    This report documents Version 4.2 of InSTREAM, including its formulation, software, and application to research and management problems. InSTREAM is a simulation model designed to understand how stream and river salmonid populations respond to habitat alteration, including altered flow, temperature, and turbidity regimes and changes in channel morphology. The model...

  4. Diatom Responses to Watershed Development and Potential Moderating Effects of Near-Stream Forest and Wetland Cover

    Science.gov (United States)

    Watershed development alters hydrology and delivers anthropogenic stressors to streams via pathways affected by impervious cover. We characterized relationships of diatom communities and metrics with upstream watershed % impervious cover (IC) and with riparian % forest and wetlan...

  5. Stream periphyton responses to mesocosm treatments of ...

    Science.gov (United States)

    A stream mesocosm experiment was designed to compare biotic responses among streams exposed to an equal excess specific conductivity target of 850 µS/cm relative to a control that was set for 200 µS/cm and three treatments comprised of different major ion contents. Each treatment and the control was replicated 4 times at the mesocosm scale (16 mesocosms total). The treatments were based on dosing the background mesocosm water, a continuous flow-through mixture of natural river water and reverse osmosis treated water, with stock salt solutions prepared from 1) a mixture of sodium chloride and calcium chloride (Na/Cl chloride), 2) sodium bicarbonate, and 3) magnesium sulfate. The realized average specific conductance over the first 28d of continuous dosing was 827, 829, and 847 µS/cm, for the chloride, bicarbonate, and sulfate based treatments, respectively, and did not differ significantly. The controls averaged 183 µS/cm. Here we focus on comparing stream periphyton communities across treatments based on measurements obtained from a Pulse-Amplitude Modulated (PAM) fluorometer. The fluorometer is used in situ and with built in algorithms distributes the total aerial algal biomass (µg/cm2) of the periphyton among cyanobacteria, diatoms, and green algae. A measurement is recorded in a matter of seconds and, therefore, many different locations can be measured with in each mesocosm at a high return frequency. Eight locations within each of the 1 m2 (0.3 m W x 3

  6. Shade and flow effects on ammonia retention in macrophyte-rich streams: implications for water quality

    International Nuclear Information System (INIS)

    Wilcock, Robert J.; Scarsbrook, Mike R.; Cooke, James G.; Costley, Kerry J.; Nagels, John W.

    2004-01-01

    Controlled releases of NH 4 -N and conservative tracers (Br - and Cl - ) to five reaches of four streams with contrasting macrophyte communities have shown differing retentions, largely as a result of the way plants interact with stream flow and velocity. First-order constants (k) were 1.0-4.8 d -1 and retention of NH 4 -N was 6-71% of amounts added to each reach. Distance travelled before a 50% reduction in concentration was achieved were 40-450 m in three streams under low-flow conditions, and 2400-3800 m at higher flows. Retention (%) of NH 4 -N can be approximated by a simple function of travel time and k, highlighting the importance of the relationship between macrophytes and stream velocity on nutrient processing. This finding has significant management implications, particularly with respect to restoration of riparian shade. Small streams with predominantly marginal emergent plants are likely to have improved retention of NH 4 -N as a result of shading or other means of reducing plant biomass. Streams dominated by submerged macrophytes will have impaired NH 4 -N retention if plant biomass is reduced because of reduced contact times between NH 4 -N molecules and reactive sites. In these conditions water resource managers should utilise riparian shading in concert with unshaded vegetated reaches to achieve a balance between enhanced in-stream habitat and nutrient processing capacity

  7. The impact of episodic coal mine drainage pollution on benthic macroinvertebrates in streams in the Anthracite region of Pennsylvania

    International Nuclear Information System (INIS)

    MacCausland, A.; McTammany, M.E.

    2007-01-01

    Episodic coal mine drainage, caused by fluctuations in mine discharges relative to stream flow, has devastating effects on aquatic macroinvertebrate communities. Seven stream reaches in the Anthracite region of Pennsylvania were identified as chronically, episodically or not impaired by mine drainage, and sampled seasonally for 1 year to determine the effect of episodic mine drainage on macroinvertebrates. Specific conductance fluctuated seasonally in episodic sites; it was lower in winter when discharge increased and higher in summer when discharges decreased and mine drainage made up a larger proportion of stream flow. Although we hypothesized that episodic streams would have higher macroinvertebrate richness than chronic streams, comparisons showed no differences in richness between treatments. Episodic pollution may result from undersized or poorly maintained passive treatment systems; therefore, intensive macroinvertebrate monitoring may be needed to identify streams being affected by episodic mine drainage because macroinvertebrate richness may be sensitive to water quality fluctuations. - Episodic coal mine pollution decreases benthic macroinvertebrate richness and density

  8. Potential impacts of global warming on the diversity and distribution of stream insects in South Korea.

    Science.gov (United States)

    Li, Fengqing; Kwon, Yong-Su; Bae, Mi-Jung; Chung, Namil; Kwon, Tae-Sung; Park, Young-Seuk

    2014-04-01

    Globally, the East Asian monsoon region is one of the richest environments in terms of biodiversity. The region is undergoing rapid human development, yet its river ecosystems have not been well studied. Global warming represents a major challenge to the survival of species in this region and makes it necessary to assess and reduce the potential consequences of warming on species of conservation concern. We projected the effects of global warming on stream insect (Ephemeroptera, Odonata, Plecoptera, and Trichoptera [EOPT]) diversity and predicted the changes of geographical ranges for 121 species throughout South Korea. Plecoptera was the most sensitive (decrease of 71.4% in number of species from the 2000s through the 2080s) order, whereas Odonata benefited (increase of 66.7% in number of species from the 2000s through the 2080s) from the effects of global warming. The impact of global warming on stream insects was predicted to be minimal prior to the 2060s; however, by the 2080s, species extirpation of up to 20% in the highland areas and 2% in the lowland areas were predicted. The projected responses of stream insects under global warming indicated that species occupying specific habitats could undergo major reductions in habitat. Nevertheless, habitat of 33% of EOPT (including two-thirds of Odonata and one-third of Ephemeroptera, Plecoptera, and Trichoptera) was predicted to increase due to global warming. The community compositions predicted by generalized additive models varied over this century, and a large difference in community structure in the highland areas was predicted between the 2000s and the 2080s. However, stream insect communities, especially Odonata, Plecoptera, and Trichoptera, were predicted to become more homogenous under global warming. © 2013 Society for Conservation Biology.

  9. Experimental investigation of acoustic streaming in a cylindrical wave guide up to high streaming Reynolds numbers.

    Science.gov (United States)

    Reyt, Ida; Bailliet, Hélène; Valière, Jean-Christophe

    2014-01-01

    Measurements of streaming velocity are performed by means of Laser Doppler Velocimetry and Particle Image Velociimetry in an experimental apparatus consisting of a cylindrical waveguide having one loudspeaker at each end for high intensity sound levels. The case of high nonlinear Reynolds number ReNL is particularly investigated. The variation of axial streaming velocity with respect to the axial and to the transverse coordinates are compared to available Rayleigh streaming theory. As expected, the measured streaming velocity agrees well with the Rayleigh streaming theory for small ReNL but deviates significantly from such predictions for high ReNL. When the nonlinear Reynolds number is increased, the outer centerline axial streaming velocity gets distorted towards the acoustic velocity nodes until counter-rotating additional vortices are generated near the acoustic velocity antinodes. This kind of behavior is followed by outer streaming cells only and measurements in the near wall region show that inner streaming vortices are less affected by this substantial evolution of fast streaming pattern. Measurements of the transient evolution of streaming velocity provide an additional insight into the evolution of fast streaming.

  10. Assessment of Streamside Management Zones for Conserving Benthic Macroinvertebrate Communities Following Timber Harvest in Eastern Kentucky Headwater Catchments

    Directory of Open Access Journals (Sweden)

    Joshua K. Adkins

    2016-06-01

    Full Text Available Headwater streams generally comprise the majority of stream area in a watershed and can have a strong influence on downstream food webs. Our objective was to determine the effect of altering streamside management zone (SMZ configurations on headwater aquatic insect communities. Timber harvests were implemented within six watersheds in eastern Kentucky. The SMZ configurations varied in width, canopy retention and best management practice (BMP utilization at the watershed scale. Benthic macroinvertebrate samples collected one year before and four years after harvest indicated few differences among treatments, although post-treatment abundance was elevated in some of the treatment streams relative to the unharvested controls. Jaccard index values were similar across SMZ treatments after logging, indicating strong community overlap. These findings suggest that stream invertebrate communities did respond to the timber harvest, though not negatively. Results also suggest that SMZ criteria for aquatic habitats in steeply sloping topography, including at least 50 percent canopy retention and widths of at least 16.8 m, appear to be adequate for protecting benthic macroinvertebrate communities from logging impacts.

  11. Vulnerable transportation and utility assets near actively migrating streams in Indiana

    Science.gov (United States)

    Sperl, Benjamin J.

    2017-11-02

    An investigation was completed by the U.S. Geological Survey in cooperation with the Indiana Office of Community and Rural Affairs that found 1,132 transportation and utility assets in Indiana are vulnerable to fluvial erosion hazards due to close proximity to actively migrating streams. Locations of transportation assets (bridges, roadways, and railroad lines) and selected utility assets (high-capacity overhead power-transmission lines, underground pipelines, water treatment facilities, and in-channel dams) were determined using aerial imagery hosted by the Google Earth platform. Identified assets were aggregated by stream reach, county, and class. Accompanying the report is a polyline shapefile of the stream reaches documented by Robinson. The shapefile, derived from line work in the National Hydrography Dataset and attributed with channel migration rates, is released with complete Federal Geographic Data Committee metadata. The data presented in this report are intended to help stakeholders and others identify high-risk areas where transportation and utility assets may be threatened by fluvial erosion hazards thus warranting consideration for mitigation strategies.

  12. Feet Wet, Hands Dirty: Engaging Students in Science Teaching and Learning with Stream Investigations

    Science.gov (United States)

    Haines, Sarah

    2016-01-01

    Stream investigation and restoration projects offer unique experiential opportunities to engage students in outdoor learning experiences that are relevant to the communities in which they live. These experiences promote an understanding of watershed issues and establish positive attitudes and behaviors that benefit local watersheds and help to…

  13. Recovery of a mining-damaged stream ecosystem

    Science.gov (United States)

    Mebane, Christopher A.; Eakins, Robert J.; Fraser, Brian G.; Adams, William J.

    2015-01-01

    This paper presents a 30+ year record of changes in benthic macroinvertebrate communities and fish populations associated with improving water quality in mining-influenced streams. Panther Creek, a tributary to the Salmon River in central Idaho, USA suffered intensive damage from mining and milling operations at the Blackbird Mine that released copper (Cu), arsenic (As), and cobalt (Co) into tributaries. From the 1960s through the 1980s, no fish and few aquatic invertebrates could be found in 40 km of mine-affected reaches of Panther Creek downstream of the metals contaminated tributaries, Blackbird and Big Deer Creeks.

  14. Development of Ecogeomorphological (EGM Stream Design and Assessment Tools for the Piedmont of Alabama, USA

    Directory of Open Access Journals (Sweden)

    Brian Helms

    2016-04-01

    Full Text Available Regional data needed for effective stream restoration include hydraulic geometry relationships (i.e., regional curves and reference channel morphology parameters. Increasingly ecological conditions are being considered when designing, implementing, and assessing restoration efforts. We provide morphology relationships and associated ecological endpoint curves for reference streams in the Alabama piedmont. Twenty-one reference stream reaches were identified in the Tallapoosa drainage of Alabama, ranging from 0.2 to 242 km2 drainage area. Geomorphic surveys were conducted in each stream to measure riffle cross-sections and longitudinal profiles and related to drainage area to develop regional curves. Fish, crayfish, and benthic macroinvertebrates were collected from each surveyed reach and related to drainage area and geomorphic data to provide associated biological community endpoints. Bankfull channel cross-section area, width, mean depth, and estimated discharge were strongly correlated to watershed drainage area, similar to efforts in other areas of the Piedmont ecoregion. Multiple measures of fish assemblages and crayfish size were strongly predicted by drainage area and geomorphic dimensions. Macroinvertebrates showed no taxonomic and limited functional relationships with drainage area and geomorphic dimension. These tools, which integrate geomorphological and ecological conditions, can result in improved stream evaluations and designs increasing the effectiveness of stream restoration projects.

  15. A Statistical Method to Predict Flow Permanence in Dryland Streams from Time Series of Stream Temperature

    Directory of Open Access Journals (Sweden)

    Ivan Arismendi

    2017-12-01

    Full Text Available Intermittent and ephemeral streams represent more than half of the length of the global river network. Dryland freshwater ecosystems are especially vulnerable to changes in human-related water uses as well as shifts in terrestrial climates. Yet, the description and quantification of patterns of flow permanence in these systems is challenging mostly due to difficulties in instrumentation. Here, we took advantage of existing stream temperature datasets in dryland streams in the northwest Great Basin desert, USA, to extract critical information on climate-sensitive patterns of flow permanence. We used a signal detection technique, Hidden Markov Models (HMMs, to extract information from daily time series of stream temperature to diagnose patterns of stream drying. Specifically, we applied HMMs to time series of daily standard deviation (SD of stream temperature (i.e., dry stream channels typically display highly variable daily temperature records compared to wet stream channels between April and August (2015–2016. We used information from paired stream and air temperature data loggers as well as co-located stream temperature data loggers with electrical resistors as confirmatory sources of the timing of stream drying. We expanded our approach to an entire stream network to illustrate the utility of the method to detect patterns of flow permanence over a broader spatial extent. We successfully identified and separated signals characteristic of wet and dry stream conditions and their shifts over time. Most of our study sites within the entire stream network exhibited a single state over the entire season (80%, but a portion of them showed one or more shifts among states (17%. We provide recommendations to use this approach based on a series of simple steps. Our findings illustrate a successful method that can be used to rigorously quantify flow permanence regimes in streams using existing records of stream temperature.

  16. A statistical method to predict flow permanence in dryland streams from time series of stream temperature

    Science.gov (United States)

    Arismendi, Ivan; Dunham, Jason B.; Heck, Michael; Schultz, Luke; Hockman-Wert, David

    2017-01-01

    Intermittent and ephemeral streams represent more than half of the length of the global river network. Dryland freshwater ecosystems are especially vulnerable to changes in human-related water uses as well as shifts in terrestrial climates. Yet, the description and quantification of patterns of flow permanence in these systems is challenging mostly due to difficulties in instrumentation. Here, we took advantage of existing stream temperature datasets in dryland streams in the northwest Great Basin desert, USA, to extract critical information on climate-sensitive patterns of flow permanence. We used a signal detection technique, Hidden Markov Models (HMMs), to extract information from daily time series of stream temperature to diagnose patterns of stream drying. Specifically, we applied HMMs to time series of daily standard deviation (SD) of stream temperature (i.e., dry stream channels typically display highly variable daily temperature records compared to wet stream channels) between April and August (2015–2016). We used information from paired stream and air temperature data loggers as well as co-located stream temperature data loggers with electrical resistors as confirmatory sources of the timing of stream drying. We expanded our approach to an entire stream network to illustrate the utility of the method to detect patterns of flow permanence over a broader spatial extent. We successfully identified and separated signals characteristic of wet and dry stream conditions and their shifts over time. Most of our study sites within the entire stream network exhibited a single state over the entire season (80%), but a portion of them showed one or more shifts among states (17%). We provide recommendations to use this approach based on a series of simple steps. Our findings illustrate a successful method that can be used to rigorously quantify flow permanence regimes in streams using existing records of stream temperature.

  17. Potential Impacts of Climate Change on Stream Water Temperatures Across the United States

    Science.gov (United States)

    Ehsani, N.; Knouft, J.; Ficklin, D. L.

    2017-12-01

    Analyses of long-term observation data have revealed significant changes in several components of climate and the hydrological cycle over the contiguous United States during the twentieth and early twenty-first century. Mean surface air temperatures have significantly increased in most areas of the country. In addition, water temperatures are increasing in many watersheds across the United States. While there are numerous studies assessing the impact of climate change on air temperatures at regional and global scales, fewer studies have investigated the impacts of climate change on stream water temperatures. Projecting increases in water temperature are particularly important to the conservation of freshwater ecosystems. To achieve better insights into attributes regulating population and community dynamics of aquatic biota at large spatial and temporal scales, we need to establish relationships between environmental heterogeneity and critical biological processes of stream ecosystems at these scales. Increases in stream temperatures caused by the doubling of atmospheric carbon dioxide may result in a significant loss of fish habitat in the United States. Utilization of physically based hydrological-water temperature models is computationally demanding and can be onerous to many researchers who specialize in other disciplines. Using statistical techniques to analyze observational data from 1760 USGS stream temperature gages, our goal is to develop a simple yet accurate method to quantify the impacts of climate warming on stream water temperatures in a way that is practical for aquatic biologists, water and environmental management purposes, and conservation practitioners and policy-makers. Using an ensemble of five global climate models (GCMs), we estimate the potential impacts of climate change on stream temperatures within the contiguous United States based on recent trends. Stream temperatures are projected to increase across the US, but the magnitude of the

  18. StreamQRE: Modular Specification and Efficient Evaluation of Quantitative Queries over Streaming Data.

    Science.gov (United States)

    Mamouras, Konstantinos; Raghothaman, Mukund; Alur, Rajeev; Ives, Zachary G; Khanna, Sanjeev

    2017-06-01

    Real-time decision making in emerging IoT applications typically relies on computing quantitative summaries of large data streams in an efficient and incremental manner. To simplify the task of programming the desired logic, we propose StreamQRE, which provides natural and high-level constructs for processing streaming data. Our language has a novel integration of linguistic constructs from two distinct programming paradigms: streaming extensions of relational query languages and quantitative extensions of regular expressions. The former allows the programmer to employ relational constructs to partition the input data by keys and to integrate data streams from different sources, while the latter can be used to exploit the logical hierarchy in the input stream for modular specifications. We first present the core language with a small set of combinators, formal semantics, and a decidable type system. We then show how to express a number of common patterns with illustrative examples. Our compilation algorithm translates the high-level query into a streaming algorithm with precise complexity bounds on per-item processing time and total memory footprint. We also show how to integrate approximation algorithms into our framework. We report on an implementation in Java, and evaluate it with respect to existing high-performance engines for processing streaming data. Our experimental evaluation shows that (1) StreamQRE allows more natural and succinct specification of queries compared to existing frameworks, (2) the throughput of our implementation is higher than comparable systems (for example, two-to-four times greater than RxJava), and (3) the approximation algorithms supported by our implementation can lead to substantial memory savings.

  19. Productivity of Stream Definitions

    NARCIS (Netherlands)

    Endrullis, Jörg; Grabmayer, Clemens; Hendriks, Dimitri; Isihara, Ariya; Klop, Jan

    2007-01-01

    We give an algorithm for deciding productivity of a large and natural class of recursive stream definitions. A stream definition is called ‘productive’ if it can be evaluated continuously in such a way that a uniquely determined stream is obtained as the limit. Whereas productivity is undecidable

  20. Productivity of stream definitions

    NARCIS (Netherlands)

    Endrullis, J.; Grabmayer, C.A.; Hendriks, D.; Isihara, A.; Klop, J.W.

    2008-01-01

    We give an algorithm for deciding productivity of a large and natural class of recursive stream definitions. A stream definition is called ‘productive’ if it can be evaluated continually in such a way that a uniquely determined stream in constructor normal form is obtained as the limit. Whereas

  1. Streams and their future inhabitants

    DEFF Research Database (Denmark)

    Sand-Jensen, K.; Friberg, Nikolai

    2006-01-01

    In this fi nal chapter we look ahead and address four questions: How do we improve stream management? What are the likely developments in the biological quality of streams? In which areas is knowledge on stream ecology insuffi cient? What can streams offer children of today and adults of tomorrow?...

  2. How low can you go? Impacts of a low-flow disturbance on aquatic insect communities.

    Science.gov (United States)

    Walters, Annika W; Post, David M

    2011-01-01

    The natural hydrology of streams and rivers is being extensively modified by human activities. Water diversion, dam construction, and climate change have the potential to increase the frequency and intensity of low-flow events. Flow is a dominant force structuring stream aquatic insect communities, but the impacts of water diversion are poorly understood. Here we report results of an experimental stream flow diversion designed to test how aquatic insect communities respond to a low-flow disturbance. We diverted 40% to 80% of the water in three replicate streams for three summers, leading to summer flow exceedance probabilities of up to 99.9%. Shifts in habitat availability appeared to be a major driver of aquatic insect community responses. Responses also varied by habitat type: total insect density decreased in riffle habitats, but there was no change in pool habitats. Overall, the total biomass of aquatic insects decreased sharply with lowered flow. Collector-filterers, collector-gatherers, and scrapers were especially susceptible, while predatory insects were more resistant. Despite extremely low flow levels, there was no shift in aquatic insect family richness. The experimental water withdrawal did not increase water temperature or decrease water quality, and some wetted habitat was always maintained, which likely prevented more severe impacts on aquatic insect communities.

  3. Salamander occupancy in headwater stream networks

    Science.gov (United States)

    Grant, E.H.C.; Green, L.E.; Lowe, W.H.

    2009-01-01

    1. Stream ecosystems exhibit a highly consistent dendritic geometry in which linear habitat units intersect to create a hierarchical network of connected branches. 2. Ecological and life history traits of species living in streams, such as the potential for overland movement, may interact with this architecture to shape patterns of occupancy and response to disturbance. Specifically, large-scale habitat alteration that fragments stream networks and reduces connectivity may reduce the probability a stream is occupied by sensitive species, such as stream salamanders. 3. We collected habitat occupancy data on four species of stream salamanders in first-order (i.e. headwater) streams in undeveloped and urbanised regions of the eastern U.S.A. We then used an information-theoretic approach to test alternative models of salamander occupancy based on a priori predictions of the effects of network configuration, region and salamander life history. 4. Across all four species, we found that streams connected to other first-order streams had higher occupancy than those flowing directly into larger streams and rivers. For three of the four species, occupancy was lower in the urbanised region than in the undeveloped region. 5. These results demonstrate that the spatial configuration of stream networks within protected areas affects the occurrences of stream salamander species. We strongly encourage preservation of network connections between first-order streams in conservation planning and management decisions that may affect stream species.

  4. Stream biofilm responses to flow intermittency: from cells to ecosystems

    OpenAIRE

    Sergi eSabater; Sergi eSabater; Xisca eTimoner; Carles eBorrego; Carles eBorrego; Vicenç eAcuña

    2016-01-01

    Temporary streams are characterized by the alternation of dry and wet hydrological phases, creating both a harsh environment for the biota as well as a high diversity of opportunities for adaptation. These systems are eminently microbial-based during several of these hydrological phases, and those growing on all solid substrata (biofilms) accordingly change their physical structure and community composition. Biofilms experience large decreases on cell densities and biomass, both of bacteria a...

  5. Stream Biofilm Responses to Flow Intermittency: From Cells to Ecosystems

    OpenAIRE

    Sabater, Sergi; Timoner, Xisca; Borrego, Carles; Acuña, Vicenç

    2016-01-01

    Temporary streams are characterized by the alternation of dry and wet hydrological phases, creating both a harsh environment for the biota as well as a high diversity of opportunities for adaptation. These systems are mainly microbial-based during several of these hydrological phases, and those growing on all solid substrata (biofilms) accordingly change their physical structure and community composition. Biofilms experience large decreases in cell densities and biomass, both of bacteria and ...

  6. Rumen microbial communities influence metabolic phenotypes in lambs

    DEFF Research Database (Denmark)

    Morgavi, Diego P.; Rahahao-Paris, Estelle; Popova, Milka

    2015-01-01

    and the metabolic phenotype of lambs for identifying host-microbe associations and potential biomarkers of digestive functions. Twin lambs, separated in two groups after birth were exposed to practices (isolation and gavage with rumen fluid with protozoa or protozoa-depleted) that differentially restricted...

  7. Non-indigenous bamboo along headwater streams of the Luquillo Mountains, Puerto Rico: leaf fall, aquatic leaf decay and patterns of invasion

    Science.gov (United States)

    PAUL J. O' CONNOR; ALAN P. COVICH; F. N. SCATENA; LLOYD L. LOOPE

    2000-01-01

    The introduction of bamboo to montane rain forests of the Luquillo Mountains, Puerto Rico in the 1930s and 1940s has led to present-day bamboo monocultures in numerous riparian areas. When a non-native species invades a riparian ecosystem, in-stream detritivores can be affected. Bamboo dynamics expected to in¯uence stream communities in the Luquillo Experimental Forest...

  8. Hydrologic connectivity and the contribution of stream headwaters to ecological integrity at regional scales

    Science.gov (United States)

    Freeman, Mary C.; Pringle, C.M.; Jackson, C.R.

    2007-01-01

    Cumulatively, headwater streams contribute to maintaining hydrologic connectivity and ecosystem integrity at regional scales. Hydrologic connectivity is the water-mediated transport of matter, energy and organisms within or between elements of the hydrologic cycle. Headwater streams compose over two-thirds of total stream length in a typical river drainage and directly connect the upland and riparian landscape to the rest of the stream ecosystem. Altering headwater streams, e.g., by channelization, diversion through pipes, impoundment and burial, modifies fluxes between uplands and downstream river segments and eliminates distinctive habitats. The large-scale ecological effects of altering headwaters are amplified by land uses that alter runoff and nutrient loads to streams, and by widespread dam construction on larger rivers (which frequently leaves free-flowing upstream portions of river systems essential to sustaining aquatic biodiversity). We discuss three examples of large-scale consequences of cumulative headwater alteration. Downstream eutrophication and coastal hypoxia result, in part, from agricultural practices that alter headwaters and wetlands while increasing nutrient runoff. Extensive headwater alteration is also expected to lower secondary productivity of river systems by reducing stream-system length and trophic subsidies to downstream river segments, affecting aquatic communities and terrestrial wildlife that utilize aquatic resources. Reduced viability of freshwater biota may occur with cumulative headwater alteration, including for species that occupy a range of stream sizes but for which headwater streams diversify the network of interconnected populations or enhance survival for particular life stages. Developing a more predictive understanding of ecological patterns that may emerge on regional scales as a result of headwater alterations will require studies focused on components and pathways that connect headwaters to river, coastal and

  9. The Relationship Between Grazing, Er osion and Adult Aquatic Insects in Streams in Mongolia.

    Directory of Open Access Journals (Sweden)

    Barbara Hayford

    2010-06-01

    Full Text Available Overgrazing along stream channels in Mongolia may impact streams by increasing stream channel erosion and in-stream sediments, water temperature, pH, and conductivity. Grazing and erosion impacts may impair stream insects. The Mongolian Aquatic Insect Survey sampled 250 streams during summer seasons in 2003-2006 and 2008. On-site identifi cations of aquatic insect families mostly based on collections of adults were recorded for each site, leading us to ask whether the family-level data were useful in biological assessment related to impacts and impairment from grazing and erosion. A double dendrogram based on hierarchical cluster analysis was used to fi nd patterns in sites and aquatic insect communities. Sites did not group by sampling period, but some sites did group by stream size and elevation. However, elevation was not a signifi cant predictor of variation in aquatic insect metrics. Analysis of variance was used to determine whether insect metrics and water quality variables varied signifi cantly between categories of erosion in the stream channel. Plecoptera and Diptera richness decreased with increased erosion and Percent Diptera Richness was the only aquatic insect metric to vary signifi cantly between categories of erosion along the stream channel. Water temperature, conductivity, and pH also signifi cantly increased with increased erosion. Multiple regression analysis was used to determine whether aquatic insect metrics could be predicted by variation in landscape, water quality and stream reach variables. Trichoptera, Ephemeroptera, and Coleoptera richness increased with increased erosion, conductivity, and pH, but not signifi cantly. Percent Diptera Richness formed the only signifi cant model in the multiple regression analysis, with conductivity the only signifi cant predictor of variation in Percent Diptera Richness. Family-level data generated in the fi eld indicated that sampling for Trichoptera and Ephemeroptera diversity would

  10. Biogeochemistry and community ecology in a spring-fed urban river following a major earthquake

    International Nuclear Information System (INIS)

    Wells, Naomi S.; Clough, Tim J.; Condron, Leo M.; Baisden, W. Troy; Harding, Jon S.; Dong, Y.; Lewis, G.D.; Lear, Gavin

    2013-01-01

    In February 2011 a M W 6.3 earthquake in Christchurch, New Zealand inundated urban waterways with sediment from liquefaction and triggered sewage spills. The impacts of, and recovery from, this natural disaster on the stream biogeochemistry and biology were assessed over six months along a longitudinal impact gradient in an urban river. The impact of liquefaction was masked by earthquake triggered sewage spills (∼20,000 m 3 day −1 entering the river for one month). Within 10 days of the earthquake dissolved oxygen in the lowest reaches was −1 , in-stream denitrification accelerated (attenuating 40–80% of sewage nitrogen), microbial biofilm communities changed, and several benthic invertebrate taxa disappeared. Following sewage system repairs, the river recovered in a reverse cascade, and within six months there were no differences in water chemistry, nutrient cycling, or benthic communities between severely and minimally impacted reaches. This study highlights the importance of assessing environmental impact following urban natural disasters. -- Highlights: •Earthquakes triggered sewage spills and liquefaction into an urban river. •Combined chemical, isotopic, and biological measurements to quantify stream recovery. •Sustained sewage discharge into the river drove eutrophication in lower reaches. •River function recovered in a reverse cascade, from chemical to macroinvertebrate. -- Linking stream community ecology with biogeochemical function, we provide an in-depth quantification of urban stream recovery following a catastrophic earthquake

  11. Fluvial geomorphology and aquatic-to-terrestrial Hg export are weakly coupled in small urban streams of Columbus, Ohio

    Science.gov (United States)

    Sullivan, S. Mažeika P.; Boaz, Lindsey E.; Hossler, Katie

    2016-04-01

    Although mercury (Hg) contamination is common in stream ecosystems, mechanisms governing bioavailability and bioaccumulation in fluvial systems remain poorly resolved as compared to lentic systems. In particular, streams in urbanized catchments are subject to fluvial geomorphic alterations that may contribute to Hg distribution, bioaccumulation, and export across the aquatic-to-terrestrial boundary. In 12 streams of urban Columbus, Ohio, we investigated the influence of fluvial geomorphic characteristics related to channel geometry, streamflow, and sediment size and distribution on (1) Hg concentrations in sediment and body burdens in benthic larval and adult emergent aquatic insects and (2) aquatic-to-terrestrial contaminant transfer to common riparian spiders of the families Pisauridae and Tetragnathidae via changes in aquatic insect Hg body burdens as well as in aquatic insect density and community composition. Hydrogeomorphic characteristics were weakly related to Hg body burdens in emergent insects (channel geometry) and tetragnathid spiders (streamflow), but not to Hg concentrations in sediment or benthic insects. Streamflow characteristics were also related to emergent insect density, while wider channels were associated with benthic insect community shifts toward smaller-bodied and more tolerant taxa (e.g., Chironomidae). Thus, our results provide initial evidence that fluvial geomorphology may influence aquatic-to-terrestrial contaminant Hg transfer through the collective effects on emergent insect body burdens as well as on aquatic insect community composition and abundance.

  12. Nitrogen saturation in stream ecosystems.

    Science.gov (United States)

    Earl, Stevan R; Valett, H Maurice; Webster, Jackson R

    2006-12-01

    The concept of nitrogen (N) saturation has organized the assessment of N loading in terrestrial ecosystems. Here we extend the concept to lotic ecosystems by coupling Michaelis-Menten kinetics and nutrient spiraling. We propose a series of saturation response types, which may be used to characterize the proximity of streams to N saturation. We conducted a series of short-term N releases using a tracer (15NO3-N) to measure uptake. Experiments were conducted in streams spanning a gradient of background N concentration. Uptake increased in four of six streams as NO3-N was incrementally elevated, indicating that these streams were not saturated. Uptake generally corresponded to Michaelis-Menten kinetics but deviated from the model in two streams where some other growth-critical factor may have been limiting. Proximity to saturation was correlated to background N concentration but was better predicted by the ratio of dissolved inorganic N (DIN) to soluble reactive phosphorus (SRP), suggesting phosphorus limitation in several high-N streams. Uptake velocity, a reflection of uptake efficiency, declined nonlinearly with increasing N amendment in all streams. At the same time, uptake velocity was highest in the low-N streams. Our conceptual model of N transport, uptake, and uptake efficiency suggests that, while streams may be active sites of N uptake on the landscape, N saturation contributes to nonlinear changes in stream N dynamics that correspond to decreased uptake efficiency.

  13. Mechanisms of pollution induced community tolerance in a soil microbial community exposed to Cu.

    Science.gov (United States)

    Wakelin, Steven; Gerard, Emily; Black, Amanda; Hamonts, Kelly; Condron, Leo; Yuan, Tong; van Nostrand, Joy; Zhou, Jizhong; O'Callaghan, Maureen

    2014-07-01

    Pollution induced community tolerance (PICT) to Cu(2+), and co-tolerance to nanoparticulate Cu, ionic silver (Ag(+)), and vancomycin were measured in field soils treated with Cu(2+) 15 years previously. EC50 values were determined using substrate induced respiration and correlations made against soil physicochemical properties, microbial community structure, physiological status (qCO2; metabolic quotient), and abundances of genes associated with metal and antibiotic resistance. Previous level of exposure to copper was directly (P < 0.05) associated with tolerance to addition of new Cu(2+), and also of nanoparticle Cu. However, Cu-exposed communities had no co-tolerance to Ag(+) and had increased susceptibly to vancomycin. Increased tolerance to both Cu correlated (P < 0.05) with increased metabolic quotient, potentially indicating that the community directed more energy towards cellular maintenance rather than biomass production. Neither bacterial or fungal community composition nor changes in the abundance of genes involved with metal resistance were related to PICT or co-tolerance mechanisms. Copyright © 2014 Elsevier Ltd. All rights reserved.

  14. Fish complementarity is associated to forests in Amazonian streams

    Directory of Open Access Journals (Sweden)

    Carolina Rodrigues Bordignon

    Full Text Available The functional structure of communities is commonly measured by the variability in functional traits, which may demonstrate complementarity or redundancy patterns. In this study, we tested the influence of environmental variables on the functional structure of fish assemblages in Amazonian streams within a deforestation gradient. We calculated six ecomorphological traits related to habitat use from each fish species, and used them to calculate the net relatedness index (NRI and the nearest taxon index (NTI. The set of species that used the habitat differently (complementary or overdispersed assemblages occurred in sites with a greater proportion of forests. The set of species that used the habitat in a similar way (redundant or clustered assemblages occurred in sites with a greater proportion of grasses in the stream banks. Therefore, the deforestation of entire watersheds, which has occurred in many Amazonian regions, may be a central factor for the functional homogenization of fish fauna.

  15. Change does not happen overnight: a case study on stream macroinvertebrates

    Directory of Open Access Journals (Sweden)

    Guareschi S.

    2016-01-01

    Full Text Available The influence of day/night conditions on individual animal/plant species has been widely studied, but diel cycle studies of the entire stream macroinvertebrate community are extremely rare. This study explored potential dissimilarities between daytime and nighttime macroinvertebrate assemblages by extensive fieldwork conducted in the Lemme stream, a natural water course of NW Italy. Here numerous structural and functional metrics (richness, abundance, biomass, indicator taxa, composition, biomonitoring values and feeding groups were evaluated at the family level. Small-scale environmental variables were investigated to understand possible differences between macroinvertebrate assemblages in the daytime/nighttime. After collecting and identifying 21 459 organisms of 50 taxa, Chironomidae (Diptera was the most abundant under both day and night conditions. Our findings stressed that similar results and biological information on daytime/nighttime data were obtained. No marked differences could be related to various factors: heterotrophic condition of small-order streams, presence of aquatic predators under night and day conditions, absence of taxa with a specific phototaxis. Of all the environmental variables, velocity was always the most important in both situations, with some differences detected in the importance of the second variable (riverbed substrate diameter. This research, and future studies on different conditions and geographic areas, will contribute knowledge on stream macroinvertebrate diel activity, and provide useful information about efficient sampling strategies.

  16. Metabolic network modeling of microbial interactions in natural and engineered environmental systems

    Directory of Open Access Journals (Sweden)

    Octavio ePerez-Garcia

    2016-05-01

    Full Text Available We review approaches to characterize metabolic interactions within microbial communities using Stoichiometric Metabolic Network (SMN models for applications in environmental and industrial biotechnology. SMN models are computational tools used to evaluate the metabolic engineering potential of various organisms. They have successfully been applied to design and optimize the microbial production of antibiotics, alcohols and amino acids by single strains. To date however, such models have been rarely applied to analyze and control the metabolism of more complex microbial communities. This is largely attributed to the diversity of microbial community functions, metabolisms and interactions. Here, we firstly review different types of microbial interaction and describe their relevance for natural and engineered environmental processes. Next, we provide a general description of the essential methods of the SMN modeling workflow including the steps of network reconstruction, simulation through Flux Balance Analysis (FBA, experimental data gathering, and model calibration. Then we broadly describe and compare four approaches to model microbial interactions using metabolic networks, i.e. i lumped networks, ii compartment per guild networks, iii bi-level optimization simulations and iv dynamic-SMN methods. These approaches can be used to integrate and analyze diverse microbial physiology, ecology and molecular community data. All of them (except the lumped approach are suitable for incorporating species abundance data but so far they have been used only to model simple communities of two to eight different species. Interactions based on substrate exchange and competition can be directly modeled using the above approaches. However, interactions based on metabolic feedbacks, such as product inhibition and synthropy require extensions to current models, incorporating gene regulation and compounding accumulation mechanisms. SMN models of microbial

  17. Helping the Amazon's Caboclos riverine communities cope with ...

    International Development Research Centre (IDRC) Digital Library (Canada)

    2013-11-15

    Nov 15, 2013 ... Tides expand the Amazon's delta's lacework of rivers and streams twice a day, ... last longer, causing more environmental damage and threatening their communities. ... Managing flood risk through collaborative governance.

  18. Omega-3 Fatty Acid Supplementation for 12 Weeks Increases Resting and Exercise Metabolic Rate in Healthy Community-Dwelling Older Females.

    Directory of Open Access Journals (Sweden)

    Samantha L Logan

    Full Text Available Critical among the changes that occur with aging are decreases in muscle mass and metabolic rate and an increase in fat mass. These changes may predispose older adults to chronic disease and functional impairment; ultimately resulting in a decrease in the quality of life. Research has suggested that long chain omega-3 fatty acids, found predominantly in fatty fish, may assist in reducing these changes. The objective of this study was to evaluate the effect of fish oil (FO supplementation in a cohort of healthy, community-dwelling older females on 1 metabolic rate and substrate oxidation at rest and during exercise; 2 resting blood pressure and resting and exercise heart rates; 3 body composition; 4 strength and physical function, and; 5 blood measures of insulin, glucose, c-reactive protein, and triglycerides. Twenty-four females (66 ± 1 yr were recruited and randomly assigned to receive either 3g/d of EPA and DHA or a placebo (PL, olive oil for 12 wk. Exercise measurements were taken before and after 12 wk of supplementation and resting metabolic measures were made before and at 6 and 12 wk of supplementation. The results demonstrated that FO supplementation significantly increased resting metabolic rate by 14%, energy expenditure during exercise by 10%, and the rate of fat oxidation during rest by 19% and during exercise by 27%. In addition, FO consumption lowered triglyceride levels by 29% and increased lean mass by 4% and functional capacity by 7%, while no changes occurred in the PL group. In conclusion, FO may be a strategy to improve age-related physical and metabolic changes in healthy older females. Trial registration: ClinicalTrials.gov NCT01734538.

  19. Independent associations between a metabolic syndrome severity score and future diabetes by sex and race: the Atherosclerosis Risk In Communities Study and Jackson Heart Study.

    Science.gov (United States)

    Gurka, Matthew J; Golden, Sherita H; Musani, Solomon K; Sims, Mario; Vishnu, Abhishek; Guo, Yi; Cardel, Michelle; Pearson, Thomas A; DeBoer, Mark D

    2017-07-01

    The study aimed to assess for an association between the degree of severity of the metabolic syndrome and risk of type 2 diabetes beyond that conferred by the individual components of the metabolic syndrome. We assessed HRs for an Adult Treatment Panel III (ATP-III) metabolic syndrome score (ATP-III MetS) and a sex- and race-specific continuous metabolic syndrome severity z score related to incident diabetes over a median of 7.8 years of follow-up among participants of two observational cohorts, the Atherosclerosis Risk in Communities study (n = 10,957) and the Jackson Heart Study (n = 2137). The ATP-III MetS had an HR for incident diabetes of 4.36 (95% CI 3.83, 4.97), which was attenuated in models that included the individual metabolic syndrome components. By contrast, participants in the fourth quartile of metabolic syndrome severity (compared with the first quartile) had an HR of 17.4 (95% CI 12.6, 24.1) for future diabetes; in models that also included the individual metabolic syndrome components, this remained significant, with an HR of 3.69 (95% CI 2.42, 5.64). There was a race × metabolic syndrome interaction in these models such that HR was greater for black participants (5.30) than white participants (2.24). When the change in metabolic syndrome severity score was included in the hazard models, this conferred a further association, with changes in metabolic syndrome severity score of ≥0.5 having a HR of 2.66 compared with changes in metabolic syndrome severity score of ≤0. Use of a continuous sex- and race-specific metabolic syndrome severity z score provided an additional prediction of risk of diabetes beyond that of the individual metabolic syndrome components, suggesting an added risk conferred by the processes underlying the metabolic syndrome. Increases in this score over time were associated with further risk, supporting the potential clinical utility of following metabolic syndrome severity over time.

  20. Relation between environmental variables and the fish community structure in streams of das Mortes and Xingu river basins – MT, Brazil

    Directory of Open Access Journals (Sweden)

    Priscylla Rodrigues Matos

    2013-09-01

    Full Text Available Environmental variables may determine and structure the composition of fish fauna. Studies comparing differences between physical and chemical variables of water between close river basins are few. This paper aimed to check which limnological variables are related to the distribution of fish species in two river basins. For this, 20 streams were sampled, divided between das Mortes and Xingu river basins. At each point one measured a total of 8 environmental variables. Fishes were collected through trawl. Total richness was 57 species, 29 of them from Xingu river basin, 35 from das Mortes river basin, and 7 species common to both river basins. The analyses showed that the streams in these two basins have distinct limnological and faunal features. The streams in Xingu river basin had lower pH values which may have been influenced by the high rates of organic decomposition. The streams of das Mortes river showed higher values of suspended matter and chlorophyll, probably due to higher degradation of streams and lower vegetation cover levels.