WorldWideScience

Sample records for sprangletop leptochloa panicoides

  1. The invasion of leptochloa chinensis (L.) nees in the MUDA area

    International Nuclear Information System (INIS)

    Hamdan Pane; Mashhor Mansor; Ho Nai Kin

    2002-01-01

    In 1981, red sprangletop (Leptochloa chinensis (L.) Nees] was first observed at site 2 (Sungai Udang) in the southern part of the Muda area. In the first cropping season of 1984, the populations of L. chinensis expanded to three sampling sites. Consequently, the populations gradually spread to other parts of the Muda area. In 1986, the infestations were recorded at sampling site 6 (Kubang Pangas) which is about 50 km from the original infestation sites. In 1988, most of the southern parts of Muda area were colonized by this weed. In 1990, the populations reached the northern part of Muda area. The whole Muda area was finally covered with L. chinensis by 1992. From 1981 until 1994, the increase of area infested per unit time was estimated at about 4% of the area based on the previous year's record. The intensive survey conducted in 1994 from the 20 sampling sites showed that in addition to L. chinensis, twelve dominant weed species were also recorded. However, by far the single most dominant weed species was L. chinensis. Based on the spatial quantitative vegetative analysis, L. chinensis populations were predominantly recorded in 75% of the sampling sites. The L. chinensis populations were also observed to thrive well on slightly acidic rice fields with pH values ranging from 4.0 to 6.8. (Author)

  2. Forma de crecimiento en Leptochloa Chloridiformis (Poaceae

    Directory of Open Access Journals (Sweden)

    Mariel G. Perreta

    2000-01-01

    Full Text Available Perreta, M. G., Tivano, J. C. & Vegetti, A. C. 2000. Forma de crecimiento en Leptochloachloridiformis (Poaceae. Darwiniana 38(3-4: 219-226.El objetivo de este trabajo fue analizar la forma de crecimiento de Leptochloa chloridiformis (Hack.Parodi. En esta especie perenne la ramificación ocurre principalmente a través de yemas axilarespresentes en la zona de innovación. Este sistema de ramificación genera una planta cespitosa, en la cual lasconexiones entre unidades estructurales son rizomas cortos. Dependiendo de su posición estas conexio-nes muestran diferentes tendencias en relación a la desarticulación estructural. En algunas plantas seobservó ramificación en la zona de entrenudos largos posiblemente debido a cambios ambientalesrelacionados con las distintas estaciones

  3. Acid hydrolysis of kallar grass (leptochloa fusca) for the production

    International Nuclear Information System (INIS)

    Chughtai, F.A.; Shah, M.H.

    1993-01-01

    Acid hydrolysis of kallar grass (leptochloa fusca) was carried of with various concentrations of sulphuric acid, ortho phosphoric acid and hydrochloric acid to produce furfural. The study revealed that activity of various hydrolysing acids to produce furfural from kallar grass was of the following order H/sub 2/SO/sub 4/ > H/sub 3/PO/sub 4/ > HCl. Optimum yield (4.78%) of the produce was obtained when the material was digested with 19% H/sub 2/SO/sub 4/ for a period of 20 minutes. (author)

  4. Macroevolution of panicoid inflorescences: a history of contingency and order of trait acquisition

    Science.gov (United States)

    Reinheimer, R.; Vegetti, A. C.; Rua, G. H.

    2013-01-01

    Background and Aims Inflorescence forms of panicoid grasses (Panicoideae s.s.) are remarkably diverse and they look very labile to human eyes; however, when performing a close inspection one can identify just a small subset of inflorescence types among a huge morphospace of possibilities. Consequently, some evolutionary constraints have restricted, to some extent, the diversification of their inflorescence. Developmental and genetic mechanisms, the photosynthetic type and plant longevity have been postulated as candidate constraints for angiosperms and panicoids in particular; however, it is not clear how these factors operate and which of these have played a key role during the grass inflorescence evolution. To gain insight into this matter the macroevolutionary aspects of panicoid inflorescences are investigated. Methods The inflorescence aspect (lax versus condensed), homogenization, truncation of the terminal spikelet, plant longevity and photosynthetic type were the traits selected for this study. Maximum likelihood and Bayesian Markov chain Monte Carlo methods were used to test different models of evolution and to evaluate the existence of evolutionary correlation among the traits. Both, models and evolutionary correlation were tested and analysed in a phylogenetic context by plotting the characters on a series of trees. For those cases in which the correlation was confirmed, test of contingency and order of trait acquisition were preformed to explore further the patterns of such co-evolution. Key Results The data reject the independent model of inflorescence trait evolution and confirmed the existence of evolutionary contingency. The results support the general trend of homogenization being a prerequisite for the loss of the terminal spikelet of the main axis. There was no evidence for temporal order in the gain of homogenization and condensation; consequently, the homogenization and condensation could occur simultaneously. The correlation between

  5. Development and Genetic Control of Plant Architecture and Biomass in the Panicoid Grass, Setaria.

    Directory of Open Access Journals (Sweden)

    Margarita Mauro-Herrera

    Full Text Available The architecture of a plant affects its ability to compete for light and to respond to environmental stresses, thus affecting overall fitness and productivity. Two components of architecture, branching and height, were studied in 182 F7 recombinant inbred lines (RILs at the vegetative, flowering and mature developmental stages in the panicoid C4 model grass system, Setaria. The RIL population was derived from a cross between domesticated S. italica (foxtail millet and its wild relative S. viridis (green foxtail. In both field and greenhouse trials the wild parent was taller initially, started branching earlier, and flowered earlier, while the domesticated parent was shorter initially, but flowered later, producing a robust tall plant architecture with more nodes and leaves on the main culm and few or no branches. Biomass was highly correlated with height of the plant and number of nodes on the main culm, and generally showed a negative relationship with branch number. However, several of the RILs with the highest biomass in both trials were significantly more branched than the domesticated parent of the cross. Quantitative trait loci (QTL analyses indicate that both height and branching are controlled by multiple genetic regions, often with QTL for both traits colocalizing in the same genomic regions. Genomic positions of several QTL colocalize with QTL in syntenic regions in other species and contain genes known to control branching and height in sorghum, maize, and switchgrass. Included in these is the ortholog of the rice SD-1 semi-dwarfing gene, which underlies one of the major Setaria height QTL. Understanding the relationships between height and branching patterns in Setaria, and their genetic control, is an important step to gaining a comprehensive knowledge of the development and genetic regulation of panicoid grass architecture.

  6. Development and Genetic Control of Plant Architecture and Biomass in the Panicoid Grass, Setaria.

    Science.gov (United States)

    Mauro-Herrera, Margarita; Doust, Andrew N

    2016-01-01

    The architecture of a plant affects its ability to compete for light and to respond to environmental stresses, thus affecting overall fitness and productivity. Two components of architecture, branching and height, were studied in 182 F7 recombinant inbred lines (RILs) at the vegetative, flowering and mature developmental stages in the panicoid C4 model grass system, Setaria. The RIL population was derived from a cross between domesticated S. italica (foxtail millet) and its wild relative S. viridis (green foxtail). In both field and greenhouse trials the wild parent was taller initially, started branching earlier, and flowered earlier, while the domesticated parent was shorter initially, but flowered later, producing a robust tall plant architecture with more nodes and leaves on the main culm and few or no branches. Biomass was highly correlated with height of the plant and number of nodes on the main culm, and generally showed a negative relationship with branch number. However, several of the RILs with the highest biomass in both trials were significantly more branched than the domesticated parent of the cross. Quantitative trait loci (QTL) analyses indicate that both height and branching are controlled by multiple genetic regions, often with QTL for both traits colocalizing in the same genomic regions. Genomic positions of several QTL colocalize with QTL in syntenic regions in other species and contain genes known to control branching and height in sorghum, maize, and switchgrass. Included in these is the ortholog of the rice SD-1 semi-dwarfing gene, which underlies one of the major Setaria height QTL. Understanding the relationships between height and branching patterns in Setaria, and their genetic control, is an important step to gaining a comprehensive knowledge of the development and genetic regulation of panicoid grass architecture.

  7. Phylogenomics and taxonomy of Lecomtelleae (Poaceae), an isolated panicoid lineage from Madagascar.

    Science.gov (United States)

    Besnard, Guillaume; Christin, Pascal-Antoine; Malé, Pierre-Jean G; Coissac, Eric; Ralimanana, Hélène; Vorontsova, Maria S

    2013-10-01

    An accurate characterization of biodiversity requires analyses of DNA sequences in addition to classical morphological descriptions. New methods based on high-throughput sequencing may allow investigation of specimens with a large set of genetic markers to infer their evolutionary history. In the grass family, the phylogenetic position of the monotypic genus Lecomtella, a rare bamboo-like endemic from Madagascar, has never been appropriately evaluated. Until now its taxonomic treatment has remained controversial, indicating the need for re-evaluation based on a combination of molecular and morphological data. The phylogenetic position of Lecomtella in Poaceae was evaluated based on sequences from the nuclear and plastid genomes generated by next-generation sequencing (NGS). In addition, a detailed morphological description of L. madagascariensis was produced, and its distribution and habit were investigated in order to assess its conservation status. The complete plastid sequence, a ribosomal DNA unit and fragments of low-copy nuclear genes (phyB and ppc) were obtained. All phylogenetic analyses place Lecomtella as an isolated member of the core panicoids, which last shared a common ancestor with other species >20 million years ago. Although Lecomtella exhibits morphological characters typical of Panicoideae, an unusual combination of traits supports its treatment as a separate group. The study showed that NGS can be used to generate abundant phylogenetic information rapidly, opening new avenues for grass phylogenetics. These data clearly showed that Lecomtella forms an isolated lineage, which, in combination with its morphological peculiarities, justifies its treatment as a separate tribe: Lecomtelleae. New descriptions of the tribe, genus and species are presented with a typification, a distribution map and an IUCN conservation assessment.

  8. Nutritional Value And Yield of Kallar Grass (Leptochloa Fusca Linn) Hay and Its Effect on Reproductive Performance of Awassi Ewes Using Progesterone Radioimmunoassay

    International Nuclear Information System (INIS)

    Al-Masri, M R..; Zarkawi, M.; Khalifa, K.

    2007-01-01

    Nutritional value of Kallar grass (Leptochloa fusca Linn) hay (whole plant), a salt-tolerant plant, was estimated by determinning its composition (ash, crude protein CP, crude fibre CF, ether extract EE, neutral-detergent fiber NDF, acid-detergent fiber ADF, acid-detergent lignin ADL); and the in vitro organic matter digestibility (IVOMD), metabolizable energy (ME), net energy of lactation (NEL) and gross energy (GE). Moreover, dry matter, energy and protein yields per hectar were also estimated. The effects of feeding Kallar grass hay to pregnant Awassi ewes on reproductive performance, serum progesterone changes using radioimmunoassay, and on birth and weaning weights of lambs born were also determined. Experimental ewes received daily 300 g of Kallar grass hay in addition to lentil straw and concentrates to cover their nutritional requirements. The results indicated that the nutritive components of Kallar grass were (g kg -1 dry matter): ash 96, CP 93, CF 290, EE 21, NDF 755, ADF 416 and ADL 94. IVOMD was 49.3%, and energy values (MJ kg -1 dry matter) were: GE 26.88, ME 6.41 and NEL 3.02. Dry matter and crude protein yields of Kallar grass hay were 7875 and 732 kg ha -1 , respectively, and the energy produced (MJ ha -1 ) was: GE 211680, ME 50479 and NEL 23783. Kallar grass had no effects on the reproductive performance of pregnant Awassi ewes duration, of pregnancy (150.1 ± 2.2 days), progesterone patterns, birth (4.7±1.0 kg) or on weaning weights (22.7 ± ≤ 5.5 kg) of lambs.

  9. Unraveling 14-3-3 proteins in C4 panicoids with emphasis on model plant Setaria italica reveals phosphorylation-dependent subcellular localization of RS splicing factor.

    Directory of Open Access Journals (Sweden)

    Karunesh Kumar

    Full Text Available 14-3-3 proteins are a large multigenic family of regulatory proteins ubiquitously found in eukaryotes. In plants, 14-3-3 proteins are reported to play significant role in both development and response to stress stimuli. Therefore, considering their importance, genome-wide analyses have been performed in many plants including Arabidopsis, rice and soybean. But, till date, no comprehensive investigation has been conducted in any C4 panicoid crops. In view of this, the present study was performed to identify 8, 5 and 26 potential 14-3-3 gene family members in foxtail millet (Si14-3-3, sorghum (Sb14-3-3 and maize (Zm14-3-3, respectively. In silico characterization revealed large variations in their gene structures; segmental and tandem duplications have played a major role in expansion of these genes in foxtail millet and maize. Gene ontology annotation showed the participation of 14-3-3 proteins in diverse biological processes and molecular functions, and in silico expression profiling indicated their higher expression in all the investigated tissues. Comparative mapping was performed to derive the orthologous relationships between 14-3-3 genes of foxtail millet and other Poaceae members, which showed a higher, as well as similar percentage of orthology among these crops. Expression profiling of Si14-3-3 genes during different time-points of abiotic stress and hormonal treatments showed a differential expression pattern of these genes, and sub-cellular localization studies revealed the site of action of Si14-3-3 proteins within the cells. Further downstream characterization indicated the interaction of Si14-3-3 with a nucleocytoplasmic shuttling phosphoprotein (SiRSZ21A in a phosphorylation-dependent manner, and this demonstrates that Si14-3-3 might regulate the splicing events by binding with phosphorylated SiRSZ21A. Taken together, the present study is a comprehensive analysis of 14-3-3 gene family members in foxtail millet, sorghum and maize

  10. Unraveling 14-3-3 proteins in C4 panicoids with emphasis on model plant Setaria italica reveals phosphorylation-dependent subcellular localization of RS splicing factor.

    Science.gov (United States)

    Kumar, Karunesh; Muthamilarasan, Mehanathan; Bonthala, Venkata Suresh; Roy, Riti; Prasad, Manoj

    2015-01-01

    14-3-3 proteins are a large multigenic family of regulatory proteins ubiquitously found in eukaryotes. In plants, 14-3-3 proteins are reported to play significant role in both development and response to stress stimuli. Therefore, considering their importance, genome-wide analyses have been performed in many plants including Arabidopsis, rice and soybean. But, till date, no comprehensive investigation has been conducted in any C4 panicoid crops. In view of this, the present study was performed to identify 8, 5 and 26 potential 14-3-3 gene family members in foxtail millet (Si14-3-3), sorghum (Sb14-3-3) and maize (Zm14-3-3), respectively. In silico characterization revealed large variations in their gene structures; segmental and tandem duplications have played a major role in expansion of these genes in foxtail millet and maize. Gene ontology annotation showed the participation of 14-3-3 proteins in diverse biological processes and molecular functions, and in silico expression profiling indicated their higher expression in all the investigated tissues. Comparative mapping was performed to derive the orthologous relationships between 14-3-3 genes of foxtail millet and other Poaceae members, which showed a higher, as well as similar percentage of orthology among these crops. Expression profiling of Si14-3-3 genes during different time-points of abiotic stress and hormonal treatments showed a differential expression pattern of these genes, and sub-cellular localization studies revealed the site of action of Si14-3-3 proteins within the cells. Further downstream characterization indicated the interaction of Si14-3-3 with a nucleocytoplasmic shuttling phosphoprotein (SiRSZ21A) in a phosphorylation-dependent manner, and this demonstrates that Si14-3-3 might regulate the splicing events by binding with phosphorylated SiRSZ21A. Taken together, the present study is a comprehensive analysis of 14-3-3 gene family members in foxtail millet, sorghum and maize, which provides

  11. Establishment of Native Grasses with Biosolids on Abandoned Croplands in Chihuahua, Mexico

    Directory of Open Access Journals (Sweden)

    Pedro Jurado-Guerra

    2013-01-01

    Full Text Available The objective of the work was to evaluate establishment and forage production of native grasses with application of biosolids, a byproduct of waste-water treatment, at an abandoned field, in Ejido Nuevo Delicias, Chihuahua, Mexico. Four biosolids rates from 0 (control to 30 dry Mg ha−1 and two methods of application, surface applied (BioSur and soil incorporated (BioInc, were evaluated. Seedbed preparation included plowing and harrowing before rainfall. Field plots of 5 × 5 m were manually sown with a mix of blue grama (Bouteloua gracilis (50% and green sprangletop (Leptochloa dubia (50% in early August 2005. Experimental design was a randomized block with a split plot arrangement. Grass density, height, and forage production were estimated for three years. Data were analyzed with mixed linear models and repeated measures. Green sprangletop density increased under all biosolids rates regardless of method of application, while blue grama density slightly decreased. Biosolids were more beneficial for green sprangletop height than for blue grama height. Blue grama forage production slightly increased, while green sprangletop forage production increased the most at 10 Mg ha−1 biosolids rate under BioSur method. It was concluded that BioSur application at 10 and 20 Mg ha−1 rates had positive effects on the establishment and forage production of native grasses, especially green sprangletop.

  12. Identification of resistant biotypes of Leptochloa chinensis in rice ...

    African Journals Online (AJOL)

    user

    2011-04-11

    Apr 11, 2011 ... essential crop after oil palm and rubber in Malaysia. (MOA, 2003). ... cost especially labor (Tabbal et al., 2002; Tomita et al.,. 2003; Savary et al., 2005) ... Methods, rate and time of application is very important to control weeds in ... house and pot (15 by 20 cm) was filled with 500 g air-dried and sterilized clay ...

  13. Grass and forb species for revegetation of mixed soil-lignite overburden in East Central Texas

    Energy Technology Data Exchange (ETDEWEB)

    Skousen, J.G.; Call, C.A. (West Virginia University, Morgantown, WV (USA). Division of Plant and Soil Sciences)

    Ten grasses and seven forbs were seeded into mixed soil-lignite overburden in the Post Oak Savannah region of Texas and monitored for establishment and growth over a 3-year period without fertilization. Buffelgrass (Cenchrus ciliaris), green sprangletop (Leptochloa dubia), switchgrass (Panicum virgatum), and kleingrass (P. coloratum) developed monotypic stands with sufficent density, aerial cover, and aboveground biomass to stabilize the mixed soil-lignite overburden surface by the end of the first growing season. Plant mortality eliminated buffelgrass and green sprangletop stands by the end of the third growing season. Indiangrass (Sorghastrum nutans) developed a satisfactory stand by the end of the third growing season, while Oldworld bluestem (Bothriochloa X Dicanthium), yellow bluestem (Bothriochloa ischaemum), and sideoats grama (Bouteloua curtipendula) established at a slower rate. Cover and biomass measurements from an adjacent, unfertilized stand of Coastal bermudagrass (Cynodon dactylon) were compared with those of seeded grasses throughout the study. Partidge pea (Cassia fasciculata) established rapidly and had the greatest cover and biomass of all seeded forbs by the end of the first growing season. Sericea lespedeza (Lespedeza cuneata), Illinois bundleflower (Desmanthus illinoensis), and western indigo (Indigofera miniata) developed adequate stands for surface stabilization by the end of the third growing season, while faseanil indigo (Indigofera suffruticosa), virgata lespedeza (Lespedeza virgata), and awnless bushsunflower (Simsia calva) showed slower establishment. 27 refs., 3 tabs.

  14. Setaria viridis and Setaria italica, model genetic systems for the Panicoid grasses.

    Science.gov (United States)

    Li, Pinghua; Brutnell, Thomas P

    2011-05-01

    Setaria italica and its wild ancestor Setaria viridis are diploid C(4) grasses with small genomes of ∼515 Mb. Both species have attributes that make them attractive as model systems. Setaria italica is a grain crop widely grown in Northern China and India that is closely related to the major food and feed crops maize and sorghum. A large collection of S. italica accessions are available and thus opportunities exist for association mapping and allele mining for novel variants that will have direct application in agriculture. Setaria viridis is the weedy relative of S. italica with many attributes suitable for genetic analyses including a small stature, rapid life cycle, and prolific seed production. Setaria sp. are morphologically similar to most of the Panicoideae grasses, including major biofuel feedstocks, switchgrass (Panicum virgatum) and Miscanthus (Miscanthus giganteus). They are broadly distributed geographically and occupy diverse ecological niches. The cross-compatibility of S. italica and S. viridis also suggests that gene flow is likely between wild and domesticated accessions. In addition to serving as excellent models for C(4) photosynthesis, these grasses provide novel opportunities to study abiotic stress tolerance and as models for bioenergy feedstocks.

  15. 7 CFR 360.200 - Designation of noxious weeds.

    Science.gov (United States)

    2010-01-01

    ... mantegazzianum Sommier & Levier (giant hogweed) Homeria spp. Imperata brasiliensis Trinius (Brazilian satintail) Imperata cylindrica (Linnaeus) Raeuschel (cogongrass) Ischaemum rugosum Salisbury (murainograss) Leptochloa...

  16. Monograph of Diplachne (Poaceae, Chloridoideae, Cynodonteae).

    Science.gov (United States)

    Snow, Neil; Peterson, Paul M; Romaschenko, Konstantin; Simon, Bryan K

    2018-01-01

    Diplachne P. Beauv. comprises two species with C 4 (NAD-ME) photosynthesis. Diplachne fusca has a nearly pantropical-pantemperate distribution with four subspecies: D. fusca subsp. fusca is Paleotropical with native distributions in Africa, southern Asia and Australia; the widespread Australian endemic D. f. subsp. muelleri; and D. f. subsp. fascicularis and D. f. subsp. uninervia occurring in the New World. Diplachne gigantea is known from a few widely scattered, older collections in east-central and southern Africa, and although Data Deficient clearly is of conservation concern. A discussion of previous taxonomic treatments is provided, including molecular data supporting Diplachne in its newer, restricted sense. Many populations of Diplachne fusca are highly tolerant of saline substrates and most prefer seasonally moist to saturated soils, often in disturbed areas. Some populations of Diplachne fusca in southern Asia combine nitrogen-fixation, high salinity tolerance and palatibilty to livestock, which should be pursued with further research for purposes of soil reclamation. Diplachne fusca subsp. uninervia is the most invasive of the subspecies and is becoming weedy in some non-native areas, including in the Old World. This monograph provides detailed descriptions of all taxa, a key to the species and subspecies, geographic distributions and information on the anatomy of leaves, stems, lemmatal micromorphology and discussions of the chromosome numbers. Lectotypes are designated for: Atropis carinata Grisb.; Diplachne acuminata Nash; Diplachne capensis (Nees) Nees var. concinna Nees; Diplachne capensis (Nees) Nees var. obscura Nees, Diplachne capensis (Nees) Nees var. prolifera subvar. minor Nees, Diplachne halei Nash, Diplachne maritima E.P. Bicknel, Diplachne muelleri Benth., Diplachne reverchonii Vasey, Diplachne tectoneticola Backer, Leptochloa imbricata Thurb., Leptochloa neuroglossa Peter, Leptochloa uninervia var. typica fo. abbreviata Parodi, Triodia

  17. Foxtail millet: a model crop for genetic and genomic studies in bioenergy grasses.

    Science.gov (United States)

    Lata, Charu; Gupta, Sarika; Prasad, Manoj

    2013-09-01

    Foxtail millet is one of the oldest domesticated diploid C4 Panicoid crops having a comparatively small genome size of approximately 515 Mb, short life cycle, and inbreeding nature. Its two species, Setaria italica (domesticated) and Setaria viridis (wild progenitor), have characteristics that classify them as excellent model systems to examine several aspects of architectural, evolutionary, and physiological importance in Panicoid grasses especially the biofuel crops such as switchgrass and napiergrass. Foxtail millet is a staple crop used extensively for food and fodder in parts of Asia and Africa. In its long history of cultivation, it has been adapted to arid and semi-arid areas of Asia, North Africa, South and North America. Foxtail millet has one of the largest collections of cultivated as well as wild-type germplasm rich with phenotypic variations and hence provides prospects for association mapping and allele-mining of elite and novel variants to be incorporated in crop improvement programs. Most of the foxtail millet accessions can be primarily abiotic stress tolerant particularly to drought and salinity, and therefore exploiting these agronomic traits can enhance its efficacy in marker-aided breeding as well as in genetic engineering for abiotic stress tolerance. In addition, the release of draft genome sequence of foxtail millet would be useful to the researchers worldwide in not only discerning the molecular basis of biomass production in biofuel crops and the methods to improve it, but also for the introgression of beneficial agronomically important characteristics in foxtail millet as well as in related Panicoid bioenergy grasses.

  18. NUTRITIONAL EVALUATION OF VARIOUS FEEDSTUFFS FOR LIVESTOCK PRODUCTION USING IN VITRO GAS METHOD

    Directory of Open Access Journals (Sweden)

    S. A. KHANUM, T. YAQOOB1, S. SADAF1, M. HUSSAIN, M. A. JABBAR1, H. N. HUSSAIN, R. KAUSAR AND S. REHMAN1

    2007-07-01

    Full Text Available A study was undertaken to evaluate the nutritional quality of some conventional and non-conventional feed resources by using in vitro gas method. Samples of various feedstuffs were analyzed chemically, as well as by in vitro gas method. The feedstuffs having different digestibilities showed significant (P<0.05 differences in the rate and amount of gas production, metabolizable energy (ME and digestibility of organic matter. Predicted metabolizable energy values were very low in feedstuffs having high fiber and low protein contents. These feedstuffs included various grasses, crop residues and wheal straw. Lowest ME value of 4.7 MJ/kg of dry matter (DM was found in wheat straw. Many of the roughages (Sorghum vulgare, Kochia indica, Leptochloa fusca studied were found to be deficient in fermentable carbohydrates, resulting in low organic matter digestibility. Concentrate feed stuffs like cotton seed meal, sunflower meal, cotton seed cakes, rice polish, rapeseed meal and Zea mays (maize grains had higher ME values (9.27 – 12.44 MJ/kg DM. The difference of ME of various feedstuffs reflects different contents of fermentable carbohydrates and available nitrogen in cereals and protein supplements. Among the non-conventional feedstuffs, Acacia ampliceps, Acacia nilotica, Sesbania aculeata, Leptochloa fusca and Prosopis juliflora were found potential fodders. Extensive use of in vitro gas method proved its potential as a tool to evaluate various ruminant feeds for energy component.

  19. Optimization of Phenotyping Assays for the Model Monocot Setaria viridis.

    Science.gov (United States)

    Acharya, Biswa R; Roy Choudhury, Swarup; Estelle, Aiden B; Vijayakumar, Anitha; Zhu, Chuanmei; Hovis, Laryssa; Pandey, Sona

    2017-01-01

    Setaria viridis (green foxtail) is an important model plant for the study of C4 photosynthesis in panicoid grasses, and is fast emerging as a system of choice for the study of plant development, domestication, abiotic stress responses and evolution. Basic research findings in Setaria are expected to advance research not only in this species and its close relative S. italica (foxtail millet), but also in other panicoid grasses, many of which are important food or bioenergy crops. Here we report on the standardization of multiple growth and development assays for S. viridis under controlled conditions, and in response to several phytohormones and abiotic stresses. We optimized these assays at three different stages of the plant's life: seed germination and post-germination growth using agar plate-based assays, early seedling growth and development using germination pouch-based assays, and adult plant growth and development under environmentally controlled growth chambers and greenhouses. These assays will be useful for the community to perform large scale phenotyping analyses, mutant screens, comparative physiological analysis, and functional characterization of novel genes of Setaria or other related agricultural crops. Precise description of various growth conditions, effective treatment conditions and description of the resultant phenotypes will help expand the use of S. viridis as an effective model system.

  20. Optimization of Phenotyping Assays for the Model Monocot Setaria viridis

    Directory of Open Access Journals (Sweden)

    Biswa R. Acharya

    2017-12-01

    Full Text Available Setaria viridis (green foxtail is an important model plant for the study of C4 photosynthesis in panicoid grasses, and is fast emerging as a system of choice for the study of plant development, domestication, abiotic stress responses and evolution. Basic research findings in Setaria are expected to advance research not only in this species and its close relative S. italica (foxtail millet, but also in other panicoid grasses, many of which are important food or bioenergy crops. Here we report on the standardization of multiple growth and development assays for S. viridis under controlled conditions, and in response to several phytohormones and abiotic stresses. We optimized these assays at three different stages of the plant’s life: seed germination and post-germination growth using agar plate-based assays, early seedling growth and development using germination pouch-based assays, and adult plant growth and development under environmentally controlled growth chambers and greenhouses. These assays will be useful for the community to perform large scale phenotyping analyses, mutant screens, comparative physiological analysis, and functional characterization of novel genes of Setaria or other related agricultural crops. Precise description of various growth conditions, effective treatment conditions and description of the resultant phenotypes will help expand the use of S. viridis as an effective model system.

  1. Successful phytoremediation of crude-oil contaminated soil at an oil exploration and production company by plants-bacterial synergism.

    Science.gov (United States)

    Fatima, Kaneez; Imran, Asma; Amin, Imran; Khan, Qaiser M; Afzal, Muhammad

    2018-06-07

    Phytoremediation is a promising approach for the cleanup of soil contaminated with petroleum hydrocarbons. This study aimed to develop plant-bacterial synergism for the successful remediation of crude oil-contaminated soil. A consortia of three endophytic bacteria was augmented to two grasses, Leptochloa fusca and Brachiaria mutica, grown in oil-contaminated soil (46.8 g oil kg -1 soil) in the vicinity of an oil exploration and production company. Endophytes augmentation improved plant growth, crude oil degradation, and soil health. Maximum oil degradation (80%) was achieved with B. mutica plants augmented with the endophytes and it was significantly (P oil reduction indicates that catabolic gene expression is important for hydrocarbon mineralization. This investigation showed that the use of endophytes with appropriate plant is an effective strategy for the cleanup of oil-contaminated soil under field conditions.

  2. Distribución e identificación de especies hospedantes de Heterodera glycines Ichinohe raza 3 en el Valle del Cauca

    Directory of Open Access Journals (Sweden)

    Varón de Agudelo Francia

    1988-06-01

    Full Text Available Se dividió la parte plana del Valle del Cauca en tres zonas (norte, centro y sur, habiéndose visitado 33 fincas. En la zona norte las malezas con mayor porcentaje de frecuencia y distribución en los cultivos de soya fueron Digitaria horizontalis, Echinochloa colonum y Leptochloa filiformis; en la zona centro Ipomoea hirta, Amaranthus dubius y Echinochloa colonum y en la zona sur predominaron Ipomoea hirta, Portulaca oleracea Cyperus rotundus. Los análisis de muestras de suelo y raíces indicaron que H. glycines se encuentra distribuido en todo el Valle del Cauca, presentando la zona sur (Candelaria, Palmira y Puerto Tejada las mayores poblaciones. Entre las especies evaluadas (malezas, cultivos, leguminosas forrajeras y silvestres, solamente Glycine max y Phaseolus vulgaris se consideraron como susceptibles a H. glycines raza 3. y P. angularis y P. multiflora permitieron muy poca infección y multiplicación del nemátodo.A nematode recognition of Heterodera glycines was focused on crops of soybean. Valle del Cauca was divided in three zones (northen, central and southern and 33 farms were visited. The results of the analysis on samples of soils and roots showe that Heterodera glycines is scattered throughout Valle del Cauca, being the southern zone (Palmira, Candelaria and Puerto Tejada the one having the highest standards in nematode population. Weeds showing a greater frequency percentage were : Digitaria horizontalis, Echinochloa colonum and Leptochloa filiformis, in the northen zone; Ipomoea hirta, Amaranthus dubius and Echinochloa colonum, in the central zone, and Ipomoea hirta, Portulaca oleracea and Cyperus rotundus, in the southern zone , From among the whole species evaluated (weeds, crops, leguminous a n d fodder plants, Glycine max and Phaseolus vulgaris were considered to be susceptible to H. Glycines race 3. Phaseolus angularis y P. multiflora let low population levels.

  3. Aspectos estructurales y tipos de vegetación de la isla Mocagua, río Amazonas

    Directory of Open Access Journals (Sweden)

    Prieto Adriana

    1995-06-01

    Full Text Available An analysis of some parameters of vegetation structure (coberture -%-, density and specific diversity is presented for plant formations in the Mocagua island (Colombian Amazonia. The structure of the vegetation types ranging from simple river beach zone, aquatic and floodplain environments, to complex arrangement in forest formations. The average number of individuals with DAP > 10 cm (58/0.1 ha is lower than other similar regions. In addition, we describe the types of vegetation founded according with floristic affinities, wich is related to the water content in the sustrata.Tha natural vegetation comprise from aquatic communities of Oxyearyum eubense - Pontederia rotundifolia, to continental ones of Rheedia madruno- Palieourea eroeea, Triehilia pallida - Sommera sabiceoides, phases of Montriehardia arboreseens and Ceeropia latíloba, Paspalum repens and Ceeropia latíloba, and Leptochloa seabra and Torulinium maeroeephalum.Se presentan los resultados de los análisis sobre parámetros estructurales de la vegetación (cobertura-%-, densidad y diversidad específica de las formaciones vegetales de la isla Mocagua (Amazonas, Colombia. La estructura de los tipos de vegetación diferenciados cubre desde los arreglos simples como la de las zonas de playa, ambientes lacustres e inundables, hasta arreglos complejos con diferentes estratos en formaciones boscosas. El número de individuos con DAP > 10 cm (prom.=58/0.1 ha en comparación con los valores en otras zonas es bajo. Los tipos de vegetación descritos obedecen en su distribución esencialmente al contenido de agua en el sustrato; la vegetación natural comprende desde comunidades acuáticas de Oxycaryum cubense - Pontederia rotundifolia, hasta las continentales de Rheedia. madruno - Palieourea eroeea, Triehilia pallida - Sommera sabieeoides y las fases de Montriehardia arboreseens y Ceeropia latiloba, Paspalum repens y Cecropia latiloba, y la de Leptochloa scabra y Torulinium maerocephalum.

  4. Leaf anatomy of the South African Danthonieae (Poaceae. XV. The genus Elytrophorus

    Directory of Open Access Journals (Sweden)

    R. P. Ellis

    1986-10-01

    Full Text Available The leaf anatomy of  Elytrophorus globularis Hack, and  E. spicatus (Willd. A. Camus is described and illustrated from freshly fixed material from SWA/Namibia and Botswana. It is shown that these two species are anatomically indistinguishable. It is suggested that they are conspecific. and that  E. spicatus possibly represents juvenile plants with immature inflorescences. The anatomical evidence strongly refutes a chloridoid relationship for Elytrophorus but appears to support arundinoid affinities for the genus. Striking anatomical and ecological similarities exist between  Elytrophorus and  Sacciolepis huillensis (Rendle Stapf. No significant leaf anatomical differences separate  Elytrophorus from S.  huillensis and some of the other C3 panicoid taxa and. consequently,  Elytro­phorus may represent a link between the Arundinoideae and the Panicoideae.

  5. Validating Internal Control Genes for the Accurate Normalization of qPCR Expression Analysis of the Novel Model Plant Setaria viridis.

    Directory of Open Access Journals (Sweden)

    Julia Lambret-Frotté

    Full Text Available Employing reference genes to normalize the data generated with quantitative PCR (qPCR can increase the accuracy and reliability of this method. Previous results have shown that no single housekeeping gene can be universally applied to all experiments. Thus, the identification of a suitable reference gene represents a critical step of any qPCR analysis. Setaria viridis has recently been proposed as a model system for the study of Panicoid grasses, a crop family of major agronomic importance. Therefore, this paper aims to identify suitable S. viridis reference genes that can enhance the analysis of gene expression in this novel model plant. The first aim of this study was the identification of a suitable RNA extraction method that could retrieve a high quality and yield of RNA. After this, two distinct algorithms were used to assess the gene expression of fifteen different candidate genes in eighteen different samples, which were divided into two major datasets, the developmental and the leaf gradient. The best-ranked pair of reference genes from the developmental dataset included genes that encoded a phosphoglucomutase and a folylpolyglutamate synthase; genes that encoded a cullin and the same phosphoglucomutase as above were the most stable genes in the leaf gradient dataset. Additionally, the expression pattern of two target genes, a SvAP3/PI MADS-box transcription factor and the carbon-fixation enzyme PEPC, were assessed to illustrate the reliability of the chosen reference genes. This study has shown that novel reference genes may perform better than traditional housekeeping genes, a phenomenon which has been previously reported. These results illustrate the importance of carefully validating reference gene candidates for each experimental set before employing them as universal standards. Additionally, the robustness of the expression of the target genes may increase the utility of S. viridis as a model for Panicoid grasses.

  6. Increased saccharification of kallar grass using ultrafiltrated enzyme from sporrotrichum thermophile

    International Nuclear Information System (INIS)

    Latif, F.; Rajoka, M.I.; Malik, K.A.

    1991-01-01

    The local wild type strain of sporotrichum thermophile when grown on untreated lingo cellulose was found to produce a greater level of B-glucosidase component along with other cellulase/xylanase components than most of the reported wild type potent strains. Culture filtrate obtained, when grown on 4% leptochloa fusca (kallar grass) was used as such and after concentration by ultrafiltration technique for saccharification purpose. Concentrated enzymes titre was increased to 1.2 and 4.0 U/ml for Fp-ase and B-glucosidase, respectively. There were losses in the enzyme titre obtained through ultrafiltration possibly due to adsorption on to the ultrafiltration membrane. Enzyme preparations used, saccharifide 5% kallar grass to 70, 55, 75 and 60% (theoretical basis) from cellulases of S. thermophile concentrate, dilute, T. reesei alone and in supplementation with B-glucosidase from A. niger, respectively. Analysis by HPLC revealed slightly higher glucose yield from S. thermophile enzyme preparations, whereas higher level of xylose was attained from T. reesei preparations. Rest of the sugars pooled as Oligo-sugars were found in almost similar concentrations. (author)

  7. Heterogeneity of Soil and Vegetation in the Urban Habitats of New Industrial Cities in the Desert Landscape of Egypt

    Directory of Open Access Journals (Sweden)

    Monier Abd EL-GHANI

    2015-03-01

    Full Text Available The relationship between vegetation and soil supporting the habitats in 4 new industrial cities were assessed. Five main habitats were distinguished from inner city toward outskirts: lawns, home gardens, public gardens, waste lands and desert outskirts. After application of Twinspan, 26 vegetation groups were identified in the 5 recognized habitats, demonstrating that some groups are chatracteristic of a certain city, e.g. Asphodelus aestivus - Deverra tortuosa - Thymelaea hirsuta group was confined to the desert habitat of Burg El-Arab city; Thymelaea hirsuta - Linaria albifrons and Atriplex halimus - Atriplex lindleyi subsp. inflata - Suaeda vermiculata - Typha domingensis groups were found in the waste lands of Burg El-Arab city; Conyza bonariensis - Cynodon dactylon - Sonchus oleraceus group in the home garden habitat of 10th Ranadan city; Cynodon dactylon group in the lawns of Burg El-Arab city; Bassia indica - Plantago major group in the public gardens of Burg El-Arab city; Oxalis corniculata - Plantago lagopus group in the public gardens of 10th Ramadan city; Sonchus oleraceus - Cynodon dactylon and Dactyloctenium aegyptium - Leptochloa fusca - Phragmites australis groups in the public gardens of 6th October city. Silt, clay, organic matter, carbonates and carbon contents showed significant diffrences among the 5 habitats.

  8. Ketertarikan Anaxipha longipennis Serville (Orthoptera: Gryllidae terhadap Beberapa Jenis Gulma di Sawah sebagai Tempat Bertelur

    Directory of Open Access Journals (Sweden)

    Sri Karindah

    2015-09-01

    Full Text Available Anaxipha longipennis Serville (Orthoptera: Gryllidae is one of the generalist predator in rice habitat that has a potential as a biological control agents of rice leaf folder eggs and small insects such as rice hoppers. Females insert their eggs in plant tissue. The female’s oviposition site is important for the subsequent distribution of the cricket. Oviposition preference on 17 weeds species from rice habitat were tested in a free choice experiment in the laboratory. There was strong evidence to conclude that the cricket preferred certain plant for laying eggs. In free choice experiment nine species of weeds were preferred by A. longipennis for laying their eggs instead of rice. The preferred species were ranked as follows: rice, Monochoria vaginalis, Cyperus rotundus, C. iria, Echinochloa colonum, E. crusgalli, Eleusine indica, Fimbristylis miliacea, Imperata cylindrica, and Limnocharis flava. Whereas Ageratum conyzoides, Alternanthera sessilis, Commelina diffusa, Leersia hexandra, Leptochloa chinensis, Ludwigia adscendens, Panicum repens, and Sonchus arvensis were not preferred in free-choice test.

  9. Bacterial rhizosphere and endosphere populations associated with grasses and trees to be used for phytoremediation of crude oil contaminated soil.

    Science.gov (United States)

    Fatima, Kaneez; Afzal, Muhammad; Imran, Asma; Khan, Qaiser M

    2015-03-01

    Different grasses and trees were tested for their growth in a crude oil contaminated soil. Three grasses, Lolium perenne, Leptochloa fusca, Brachiaria mutica, and two trees, Lecucaena leucocephala and Acacia ampliceps, were selected to investigate the diversity of hydrocarbon-degrading rhizospheric and endophytic bacteria. We found a higher number of hydrocarbon degrading bacteria associated with grasses than trees and that the endophytic bacteria were taxonomically different from rhizosphere associated bacteria showing their spatial distribution with reference to plant compartment as well as genotype. The rhizospheric soil yielded 22 (59.45 %), root interior yielded 9 (24.32 %) and shoot interior yielded 6 (16.21 %) hydrocarbon-degrading bacteria. These bacteria possessed genes encoding alkane hydroxylase and showed multiple plant growth-promoting activities. Bacillus (48.64 %) and Acinetobacter (18.91 %) were dominant genera found in this study. At 2 % crude oil concentration, all bacterial isolates exhibited 25 %-78 % oil degradation and Acinetobacter sp. strain BRSI56 degraded maximum. Our study suggests that for practical application, support of potential bacteria combined with the grasses is more effective approach than trees to remediate oil contaminated soils.

  10. Bacterial endophytes enhance phytostabilization in soils contaminated with uranium and lead.

    Science.gov (United States)

    Ahsan, Muhammad Tayyab; Najam-Ul-Haq, Muhammad; Idrees, Muhammad; Ullah, Inayat; Afzal, Muhammad

    2017-10-03

    The combined use of plants and bacteria is a promising approach for the remediation of polluted soil. In the current study, the potential of bacterial endophytes in partnership with Leptochloa fusca (L.) Kunth was evaluated for the remediation of uranium (U)- and lead (Pb)-contaminated soil. L. fusca was vegetated in contaminated soil and inoculated with three different endophytic bacterial strains, Pantoea stewartii ASI11, Enterobacter sp. HU38, and Microbacterium arborescens HU33, individually as well as in combination. The results showed that the L. fusca can grow in the contaminated soil. Bacterial inoculation improved plant growth and phytoremediation capacity: this manifested in the form of a 22-51% increase in root length, 25-62% increase in shoot height, 10-21% increase in chlorophyll content, and 17-59% more plant biomass in U- and Pb-contaminated soils as compared to plants without bacterial inoculation. Although L. fusca plants showed potential to accumulate U and Pb in their root and shoot on their own, bacterial consortia further enhanced metal uptake capacity by 53-88% for U and 58-97% for Pb. Our results indicate that the combination of L. fusca and endophytic bacterial consortia can effectively be used for the phytostabilization of both U- and Pb-contaminated soils.

  11. Mapping of quantitative trait locus (QTLs that contribute to germination and early seedling drought tolerance in the interspecific cross Setaria italica×Setaria viridis.

    Directory of Open Access Journals (Sweden)

    Lufeng Qie

    Full Text Available Drought tolerance is an important breeding target for enhancing the yields of grain crop species in arid and semi-arid regions of the world. Two species of Setaria, domesticated foxtail millet (S. italica and its wild ancestor green foxtail (S. viridis are becoming widely adopted as models for functional genomics studies in the Panicoid grasses. In this study, the genomic regions controlling germination and early seedling drought tolerance in Setaria were identified using 190 F7 lines derived from a cross between Yugu1, a S. italica cultivar developed in China, and a wild S. viridis genotype collected from Uzbekistan. Quantitative trait loci were identified which contribute to a number of traits including promptness index, radical root length, coleoptile length and lateral root number at germinating stage and seedling survival rate was characterized by the ability of desiccated seedlings to revive after rehydration. A genetic map with 128 SSR markers which spans 1293.9 cM with an average of 14 markers per linkage group of the 9 linkage groups was constructed. A total of eighteen QTLs were detected which included nine that explained over 10% of the phenotypic variance for a given trait. Both the wild green foxtail genotype and the foxtail millet cultivar contributed the favorite alleles for traits detected in this trial, indicating that wild Setaria viridis populations may serve as a reservoir for novel stress tolerance alleles which could be employed in foxtail millet breeding.

  12. Genetic control and comparative genomic analysis of flowering time in Setaria (Poaceae).

    Science.gov (United States)

    Mauro-Herrera, Margarita; Wang, Xuewen; Barbier, Hugues; Brutnell, Thomas P; Devos, Katrien M; Doust, Andrew N

    2013-02-01

    We report the first study on the genetic control of flowering in Setaria, a panicoid grass closely related to switchgrass, and in the same subfamily as maize and sorghum. A recombinant inbred line mapping population derived from a cross between domesticated Setaria italica (foxtail millet) and its wild relative Setaria viridis (green millet), was grown in eight trials with varying environmental conditions to identify a small number of quantitative trait loci (QTL) that control differences in flowering time. Many of the QTL across trials colocalize, suggesting that the genetic control of flowering in Setaria is robust across a range of photoperiod and other environmental factors. A detailed comparison of QTL for flowering in Setaria, sorghum, and maize indicates that several of the major QTL regions identified in maize and sorghum are syntenic orthologs with Setaria QTL, although the maize large effect QTL on chromosome 10 is not. Several Setaria QTL intervals had multiple LOD peaks and were composed of multiple syntenic blocks, suggesting that observed QTL represent multiple tightly linked loci. Candidate genes from flowering time pathways identified in rice and Arabidopsis were identified in Setaria QTL intervals, including those involved in the CONSTANS photoperiod pathway. However, only three of the approximately seven genes cloned for flowering time in maize colocalized with Setaria QTL. This suggests that variation in flowering time in separate grass lineages is controlled by a combination of conserved and lineage specific genes.

  13. Mapping of quantitative trait locus (QTLs) that contribute to germination and early seedling drought tolerance in the interspecific cross Setaria italica×Setaria viridis.

    Science.gov (United States)

    Qie, Lufeng; Jia, Guanqing; Zhang, Wenying; Schnable, James; Shang, Zhonglin; Li, Wei; Liu, Binhui; Li, Mingzhe; Chai, Yang; Zhi, Hui; Diao, Xianmin

    2014-01-01

    Drought tolerance is an important breeding target for enhancing the yields of grain crop species in arid and semi-arid regions of the world. Two species of Setaria, domesticated foxtail millet (S. italica) and its wild ancestor green foxtail (S. viridis) are becoming widely adopted as models for functional genomics studies in the Panicoid grasses. In this study, the genomic regions controlling germination and early seedling drought tolerance in Setaria were identified using 190 F7 lines derived from a cross between Yugu1, a S. italica cultivar developed in China, and a wild S. viridis genotype collected from Uzbekistan. Quantitative trait loci were identified which contribute to a number of traits including promptness index, radical root length, coleoptile length and lateral root number at germinating stage and seedling survival rate was characterized by the ability of desiccated seedlings to revive after rehydration. A genetic map with 128 SSR markers which spans 1293.9 cM with an average of 14 markers per linkage group of the 9 linkage groups was constructed. A total of eighteen QTLs were detected which included nine that explained over 10% of the phenotypic variance for a given trait. Both the wild green foxtail genotype and the foxtail millet cultivar contributed the favorite alleles for traits detected in this trial, indicating that wild Setaria viridis populations may serve as a reservoir for novel stress tolerance alleles which could be employed in foxtail millet breeding.

  14. FmMDb: a versatile database of foxtail millet markers for millets and bioenergy grasses research.

    Directory of Open Access Journals (Sweden)

    Venkata Suresh B

    Full Text Available The prominent attributes of foxtail millet (Setaria italica L. including its small genome size, short life cycle, inbreeding nature, and phylogenetic proximity to various biofuel crops have made this crop an excellent model system to investigate various aspects of architectural, evolutionary and physiological significances in Panicoid bioenergy grasses. After release of its whole genome sequence, large-scale genomic resources in terms of molecular markers were generated for the improvement of both foxtail millet and its related species. Hence it is now essential to congregate, curate and make available these genomic resources for the benefit of researchers and breeders working towards crop improvement. In view of this, we have constructed the Foxtail millet Marker Database (FmMDb; http://www.nipgr.res.in/foxtail.html, a comprehensive online database for information retrieval, visualization and management of large-scale marker datasets with unrestricted public access. FmMDb is the first database which provides complete marker information to the plant science community attempting to produce elite cultivars of millet and bioenergy grass species, thus addressing global food insecurity.

  15. Genome-wide analysis of heat shock proteins in C4 model, foxtail millet identifies potential candidates for crop improvement under abiotic stress.

    Science.gov (United States)

    Singh, Roshan Kumar; Jaishankar, Jananee; Muthamilarasan, Mehanathan; Shweta, Shweta; Dangi, Anand; Prasad, Manoj

    2016-09-02

    Heat shock proteins (HSPs) perform significant roles in conferring abiotic stress tolerance to crop plants. In view of this, HSPs and their encoding genes were extensively characterized in several plant species; however, understanding their structure, organization, evolution and expression profiling in a naturally stress tolerant crop is necessary to delineate their precise roles in stress-responsive molecular machinery. In this context, the present study has been performed in C4 panicoid model, foxtail millet, which resulted in identification of 20, 9, 27, 20 and 37 genes belonging to SiHSP100, SiHSP90, SiHSP70, SiHSP60 and SisHSP families, respectively. Comprehensive in silico characterization of these genes followed by their expression profiling in response to dehydration, heat, salinity and cold stresses in foxtail millet cultivars contrastingly differing in stress tolerance revealed significant upregulation of several genes in tolerant cultivar. SisHSP-27 showed substantial higher expression in response to heat stress in tolerant cultivar, and its over-expression in yeast system conferred tolerance to several abiotic stresses. Methylation analysis of SiHSP genes suggested that, in susceptible cultivar, higher levels of methylation might be the reason for reduced expression of these genes during stress. Altogether, the study provides novel clues on the role of HSPs in conferring stress tolerance.

  16. Efeitos de dessecantes no controle de plantas daninhas na cultura da soja Effects of burndown herbicides in weed control in soybean crop

    Directory of Open Access Journals (Sweden)

    S.O. Procópio

    2006-01-01

    Full Text Available Este trabalho teve como objetivo avaliar a eficiência do glyphosate e da mistura comercial paraquat + diuron, bem como o efeito do intervalo entre as aplicações desses herbicidas e a semeadura da soja, sobre o controle e a rebrota de Digitaria insularis, Synedrellopsis grisebachii e Leptochloa filiformis. O experimento foi conduzido em área de soja em sistema de plantio direto, utilizando-se o delineamento de blocos casualizados com nove tratamentos e quatro repetições. Foram avaliados os seguintes tratamentos: glyphosate no dia da semeadura e um, dois e cinco dias antes desta; paraquat + diuron 20 dias antes e no dia da semeadura; glyphosate 10 dias antes da semeadura e paraquat + diuron no dia da semeadura; glyphosate 15 dias antes da semeadura e paraquat + diuron no dia da semeadura; glyphosate 20 dias antes da semeadura e paraquat + diuron no dia da semeadura; e testemunha infestada. Verificou-se controle satisfatório e impedimento de rebrota de D. insularis e L. filiformis quando o glyphosate foi aplicado cinco dias antes da semeadura da soja ou quando foi realizada aplicação seqüencial de glyphosate e paraquat + diuron. Aplicações seqüenciais da mistura comercial de paraquat + diuron não foram eficientes no controle e no impedimento da rebrota de D. insularis e L. filiformis. S. grisebachii mostrou-se tolerante ao glyphosate.The objectives of this work were to evaluate the efficiency of glyphosate and preformulated mixture paraquat + diuron as well as the effect of the interval between herbicide applications and soybean sowing on the control and re-growth impairment of the following weeds: Digitaria insularis, Synedrellopsis grisebach and Leptochloa filiformis. The experiment was carried out in a soybean area under no-till system and was arranged in a randomized block design, with 9 treatments and four replications. The following treatments were evaluated: glyphosate applied on sowing day; one day before sowing day; two days

  17. The effect of elevated CO2 and temperature on nutrient uptake by plants grown in basaltic soil

    Science.gov (United States)

    Villasenor Iribe, E.; Dontsova, K.; Juarez, S.; Le Galliard, J. F.; Chollet, S.; Llavata, M.; Massol, F.; Barré, P.; Gelabert, A.; Daval, D.; Troch, P.; Barron-Gafford, G.; Van Haren, J. L. M.; Ferrière, R.

    2017-12-01

    Mineral weathering is an important process in soil formation. The interactions between the hydrologic, geologic and atmospheric cycles often determine the rate at which weathering occurs. Elements and nutrients weathered from the soil by water can be removed from soils in the runoff and seepage, but they can also remain in situ as newly precipitated secondary minerals or in biomass as a result of plant uptake. Here we present data from an experiment that was conducted at the controlled environment facility, Ecotron Ile-de-France (Saint-Pierre-les-Nemours, France) that studied mineral weathering and plant growth in granular basaltic material with high glass content that is being used to simulate soil in large scale Biosphere 2 Landscape Evolution Observatory (LEO) project. The experiment used 3 plant types: velvet mesquite (Prosopis velutina), green spangletop (Leptochloa dubia), and alfalfa (Medicago sativa), which were grown under varying temperature and CO2 conditions. We hypothesized that plants grown under warmer, higher CO2 conditions would have larger nutrient concentrations as more mineral weathering would occur. Results of plant digestions and analysis showed that plant concentrations of lithogenic elements were significantly influenced by the plant type and were different between above- and below-ground parts of the plant. Temperature and CO2 treatment effects were less pronounced, but we observed significant temperature effect on plant uptake. A number of major and trace elements showed increase in concentration with increase in temperature at elevated atmospheric CO2. Effect was observed both in the shoots and in the roots, but more significant differences were observed in the shoots. Results presented here indicate that climate change would have strong effect on plant uptake and mobility of weathered elements during soil formation and give further evidence of interactions between abiotic and biological processes in terrestrial ecosystems.

  18. Periodo de interferencia de arvenses en el cultivo de berenjena (Solanum melongena L.

    Directory of Open Access Journals (Sweden)

    Aramendiz-Tatis Hermes

    2010-04-01

    Full Text Available

    Dada la importancia de la berenjena en la horticultura del Caribe colombiano, el presente trabajo buscó establecer las bases de un manejo sustentable e integrado de malezas en este cultivo, basado en el período de máxima interferencia de aquellas sobre este. El estudio se realizó en la Universidad de Córdoba, ubicada en Montería (8°39’ N; 75°58’ W. El diseño experimental consistió en bloques completamente aleatorizados, con cuatro repeticiones y siete tratamientos relacionados con periodos crecientes de control de arvenses, seguidos por ausencia de control. Los resultados muestran que las arvenses con mayor presencia fueron paja mona (Leptochloa filiformis [Lam.] Beauv., caminadora (Rottboellia cochinchinensis [Lour.] W.D. Clayton, liendre de puerco (Echinochloa colona [L.] Link., coquito (Cyperus rotundus L. y bledo (Amaranthus retroflexus L.. Las arvenses afectaron la altura de la planta, el diámetro del tallo, y el rendimiento y calidad del fruto. Este último parámetro no se ve afectado cuando el cultivar lila se mantiene limpio durante los primeros 40 días. Al considerar el tipo de productor de esta hortaliza en el valle del Sinú, se sugiere utilizar: i para áreas pequeñas, métodos físicos, como el arranque manual o corte con machete u otra herramienta, y prácticas culturales; ii para áreas grandes, la combinación de herbicidas de presiembra con métodos físicos y culturales.

  19. C2H2 type of zinc finger transcription factors in foxtail millet define response to abiotic stresses.

    Science.gov (United States)

    Muthamilarasan, Mehanathan; Bonthala, Venkata Suresh; Mishra, Awdhesh Kumar; Khandelwal, Rohit; Khan, Yusuf; Roy, Riti; Prasad, Manoj

    2014-09-01

    C2H2 type of zinc finger transcription factors (TFs) play crucial roles in plant stress response and hormone signal transduction. Hence considering its importance, genome-wide investigation and characterization of C2H2 zinc finger proteins were performed in Arabidopsis, rice and poplar but no such study was conducted in foxtail millet which is a C4 Panicoid model crop well known for its abiotic stress tolerance. The present study identified 124 C2H2-type zinc finger TFs in foxtail millet (SiC2H2) and physically mapped them onto the genome. The gene duplication analysis revealed that SiC2H2s primarily expanded in the genome through tandem duplication. The phylogenetic tree classified these TFs into five groups (I-V). Further, miRNAs targeting SiC2H2 transcripts in foxtail millet were identified. Heat map demonstrated differential and tissue-specific expression patterns of these SiC2H2 genes. Comparative physical mapping between foxtail millet SiC2H2 genes and its orthologs of sorghum, maize and rice revealed the evolutionary relationships of C2H2 type of zinc finger TFs. The duplication and divergence data provided novel insight into the evolutionary aspects of these TFs in foxtail millet and related grass species. Expression profiling of candidate SiC2H2 genes in response to salinity, dehydration and cold stress showed differential expression pattern of these genes at different time points of stresses.

  20. Global analysis of WRKY transcription factor superfamily in Setaria identifies potential candidates involved in abiotic stress signalling

    Directory of Open Access Journals (Sweden)

    Mehanathan eMuthamilarasan

    2015-10-01

    Full Text Available Transcription factors (TFs are major players in stress signalling and constitute an integral part of signalling networks. Among the major TFs, WRKY proteins play pivotal roles in regulation of transcriptional reprogramming associated with stress responses. In view of this, genome- and transcriptome-wide identification of WRKY TF family was performed in the C4 model plants, Setaria italica (SiWRKY and S. viridis (SvWRKY, respectively. The study identified 105 SiWRKY and 44 SvWRKY proteins that were computationally analysed for their physicochemical properties. Sequence alignment and phylogenetic analysis classified these proteins into three major groups, namely I, II and III with majority of WRKY proteins belonging to group II (53 SiWRKY and 23 SvWRKY, followed by group III (39 SiWRKY and 11 SvWRKY and group I (10 SiWRKY and 6 SvWRKY. Group II proteins were further classified into 5 subgroups (IIa to IIe based on their phylogeny. Domain analysis showed the presence of WRKY motif and zinc finger-like structures in these proteins along with additional domains in a few proteins. All SiWRKY genes were physically mapped on the S. italica genome and their duplication analysis revealed that 10 and 8 gene pairs underwent tandem and segmental duplications, respectively. Comparative mapping of SiWRKY and SvWRKY genes in related C4 panicoid genomes demonstrated the orthologous relationships between these genomes. In silico expression analysis of SiWRKY and SvWRKY genes showed their differential expression patterns in different tissues and stress conditions. Expression profiling of candidate SiWRKY genes in response to stress (dehydration and salinity and hormone treatments (abscisic acid, salicylic acid and methyl jasmonate suggested the putative involvement of SiWRKY066 and SiWRKY082 in stress and hormone signalling. These genes could be potential candidates for further characterization to delineate their functional roles in abiotic stress signalling.

  1. Global analysis of WRKY transcription factor superfamily in Setaria identifies potential candidates involved in abiotic stress signaling.

    Science.gov (United States)

    Muthamilarasan, Mehanathan; Bonthala, Venkata S; Khandelwal, Rohit; Jaishankar, Jananee; Shweta, Shweta; Nawaz, Kashif; Prasad, Manoj

    2015-01-01

    Transcription factors (TFs) are major players in stress signaling and constitute an integral part of signaling networks. Among the major TFs, WRKY proteins play pivotal roles in regulation of transcriptional reprogramming associated with stress responses. In view of this, genome- and transcriptome-wide identification of WRKY TF family was performed in the C4model plants, Setaria italica (SiWRKY) and S. viridis (SvWRKY), respectively. The study identified 105 SiWRKY and 44 SvWRKY proteins that were computationally analyzed for their physicochemical properties. Sequence alignment and phylogenetic analysis classified these proteins into three major groups, namely I, II, and III with majority of WRKY proteins belonging to group II (53 SiWRKY and 23 SvWRKY), followed by group III (39 SiWRKY and 11 SvWRKY) and group I (10 SiWRKY and 6 SvWRKY). Group II proteins were further classified into 5 subgroups (IIa to IIe) based on their phylogeny. Domain analysis showed the presence of WRKY motif and zinc finger-like structures in these proteins along with additional domains in a few proteins. All SiWRKY genes were physically mapped on the S. italica genome and their duplication analysis revealed that 10 and 8 gene pairs underwent tandem and segmental duplications, respectively. Comparative mapping of SiWRKY and SvWRKY genes in related C4 panicoid genomes demonstrated the orthologous relationships between these genomes. In silico expression analysis of SiWRKY and SvWRKY genes showed their differential expression patterns in different tissues and stress conditions. Expression profiling of candidate SiWRKY genes in response to stress (dehydration and salinity) and hormone treatments (abscisic acid, salicylic acid, and methyl jasmonate) suggested the putative involvement of SiWRKY066 and SiWRKY082 in stress and hormone signaling. These genes could be potential candidates for further characterization to delineate their functional roles in abiotic stress signaling.

  2. Global Transcriptome Analysis of Combined Abiotic Stress Signaling Genes Unravels Key Players in Oryza sativa L.: An In silico Approach

    Directory of Open Access Journals (Sweden)

    Pandiyan Muthuramalingam

    2017-05-01

    Full Text Available Combined abiotic stress (CAbS affects the field grown plants simultaneously. The multigenic and quantitative nature of uncontrollable abiotic stresses complicates the process of understanding the stress response by plants. Considering this, we analyzed the CAbS response of C3 model plant, Oryza sativa by meta-analysis. The datasets of commonly expressed genes by drought, salinity, submergence, metal, natural expression, biotic, and abiotic stresses were data mined through publically accessible transcriptomic abiotic stress (AbS responsive datasets. Of which 1,175, 12,821, and 42,877 genes were commonly expressed in meta differential, individual differential, and unchanged expressions respectively. Highly regulated 100 differentially expressed AbS genes were derived through integrative meta-analysis of expression data (INMEX. Of this 30 genes were identified from AbS gene families through expression atlas that were computationally analyzed for their physicochemical properties. All AbS genes were physically mapped against O. sativa genome. Comparative mapping of these genes demonstrated the orthologous relationship with related C4 panicoid genome. In silico expression analysis of these genes showed differential expression patterns in different developmental tissues. Protein–protein interaction of these genes, represented the complexity of AbS. Computational expression profiling of candidate genes in response to multiple stresses suggested the putative involvement of OS05G0350900, OS02G0612700, OS05G0104200, OS03G0596200, OS12G0225900, OS07G0152000, OS08G0119500, OS06G0594700, and Os01g0393100 in CAbS. These potential candidate genes need to be studied further to decipher their functional roles in AbS dynamics.

  3. Global analysis of WRKY transcription factor superfamily in Setaria identifies potential candidates involved in abiotic stress signaling

    Science.gov (United States)

    Muthamilarasan, Mehanathan; Bonthala, Venkata S.; Khandelwal, Rohit; Jaishankar, Jananee; Shweta, Shweta; Nawaz, Kashif; Prasad, Manoj

    2015-01-01

    Transcription factors (TFs) are major players in stress signaling and constitute an integral part of signaling networks. Among the major TFs, WRKY proteins play pivotal roles in regulation of transcriptional reprogramming associated with stress responses. In view of this, genome- and transcriptome-wide identification of WRKY TF family was performed in the C4model plants, Setaria italica (SiWRKY) and S. viridis (SvWRKY), respectively. The study identified 105 SiWRKY and 44 SvWRKY proteins that were computationally analyzed for their physicochemical properties. Sequence alignment and phylogenetic analysis classified these proteins into three major groups, namely I, II, and III with majority of WRKY proteins belonging to group II (53 SiWRKY and 23 SvWRKY), followed by group III (39 SiWRKY and 11 SvWRKY) and group I (10 SiWRKY and 6 SvWRKY). Group II proteins were further classified into 5 subgroups (IIa to IIe) based on their phylogeny. Domain analysis showed the presence of WRKY motif and zinc finger-like structures in these proteins along with additional domains in a few proteins. All SiWRKY genes were physically mapped on the S. italica genome and their duplication analysis revealed that 10 and 8 gene pairs underwent tandem and segmental duplications, respectively. Comparative mapping of SiWRKY and SvWRKY genes in related C4 panicoid genomes demonstrated the orthologous relationships between these genomes. In silico expression analysis of SiWRKY and SvWRKY genes showed their differential expression patterns in different tissues and stress conditions. Expression profiling of candidate SiWRKY genes in response to stress (dehydration and salinity) and hormone treatments (abscisic acid, salicylic acid, and methyl jasmonate) suggested the putative involvement of SiWRKY066 and SiWRKY082 in stress and hormone signaling. These genes could be potential candidates for further characterization to delineate their functional roles in abiotic stress signaling. PMID:26635818

  4. Integrative analysis and expression profiling of secondary cell wall genes in C4 biofuel model Setaria italica reveals targets for lignocellulose bioengineering

    Directory of Open Access Journals (Sweden)

    Mehanathan eMuthamilarasan

    2015-11-01

    Full Text Available Several underutilized grasses have excellent potential for use as bioenergy feedstock due to their lignocellulosic biomass. Genomic tools have enabled identification of lignocellulose biosynthesis genes in several sequenced plants. However, the non-availability of whole genome sequence of bioenergy grasses hinders the study on bioenergy genomics and their genomics-assisted crop improvement. Foxtail millet (Setaria italica L.; Si is a model crop for studying systems biology of bioenergy grasses. In the present study, a systematic approach has been used for identification of gene families involved in cellulose (CesA/Csl, callose (Gsl and monolignol biosynthesis (PAL, C4H, 4CL, HCT, C3H, CCoAOMT, F5H, COMT, CCR, CAD and construction of physical map of foxtail millet. Sequence alignment and phylogenetic analysis of identified proteins showed that monolignol biosynthesis proteins were highly diverse, whereas CesA/Csl and Gsl proteins were homologous to rice and Arabidopsis. Comparative mapping of foxtail millet lignocellulose biosynthesis genes with other C4 panicoid genomes revealed maximum homology with switchgrass, followed by sorghum and maize. Expression profiling of candidate lignocellulose genes in response to different abiotic stresses and hormone treatments showed their differential expression pattern, with significant higher expression of SiGsl12, SiPAL2, SiHCT1, SiF5H2 and SiCAD6 genes. Further, due to the evolutionary conservation of grass genomes, the insights gained from the present study could be extrapolated for identifying genes involved in lignocellulose biosynthesis in other biofuel species for further characterization.

  5. Integrative analysis and expression profiling of secondary cell wall genes in C4 biofuel model Setaria italica reveals targets for lignocellulose bioengineering.

    Science.gov (United States)

    Muthamilarasan, Mehanathan; Khan, Yusuf; Jaishankar, Jananee; Shweta, Shweta; Lata, Charu; Prasad, Manoj

    2015-01-01

    Several underutilized grasses have excellent potential for use as bioenergy feedstock due to their lignocellulosic biomass. Genomic tools have enabled identification of lignocellulose biosynthesis genes in several sequenced plants. However, the non-availability of whole genome sequence of bioenergy grasses hinders the study on bioenergy genomics and their genomics-assisted crop improvement. Foxtail millet (Setaria italica L.; Si) is a model crop for studying systems biology of bioenergy grasses. In the present study, a systematic approach has been used for identification of gene families involved in cellulose (CesA/Csl), callose (Gsl) and monolignol biosynthesis (PAL, C4H, 4CL, HCT, C3H, CCoAOMT, F5H, COMT, CCR, CAD) and construction of physical map of foxtail millet. Sequence alignment and phylogenetic analysis of identified proteins showed that monolignol biosynthesis proteins were highly diverse, whereas CesA/Csl and Gsl proteins were homologous to rice and Arabidopsis. Comparative mapping of foxtail millet lignocellulose biosynthesis genes with other C4 panicoid genomes revealed maximum homology with switchgrass, followed by sorghum and maize. Expression profiling of candidate lignocellulose genes in response to different abiotic stresses and hormone treatments showed their differential expression pattern, with significant higher expression of SiGsl12, SiPAL2, SiHCT1, SiF5H2, and SiCAD6 genes. Further, due to the evolutionary conservation of grass genomes, the insights gained from the present study could be extrapolated for identifying genes involved in lignocellulose biosynthesis in other biofuel species for further characterization.

  6. EFECTO DEL ACEITE MINERAL AGRATEX-HE EN EL CONTROL DE MALEZAS EN CAÑA DE AZÚCAR

    Directory of Open Access Journals (Sweden)

    Valent\\u00EDn Alberto Esqueda-Esquivel

    2008-01-01

    Full Text Available Se condujo un experimento de evaluación del aceite mineral Agratex-HE con el objeto de determinar su efectividad como coadyuvante de la mezcla de los herbicidas ametrina + 2,4-D y su toxicidad a la caña de azúcar, durante el ciclo primavera-verano 2001, en una siembra comercial de caña de azúcar de la variedad Q-96. El experimento se estableció en Tolome, en el estado de Veracruz, México. Se evaluaron siete tratamientos: Agratex- HE a 1,5; 2 y 2,5 l por 100 l de agua, con ametrina + 2,4-D a 1225 + 650 g i.a./ha, Agratex-HE a 7,5 l en 100 l de agua sin herbicida, Agridex a 2,5 l en 100 l de agua con ametrina + 2,4-D a 1.225 + 650 g i.a./ha, ametrina + 2,4-D a 1225 + 650 g i.a./ha sin coadyuvante y un testigo sin coadyuvante y sin herbicida. Se utilizó el diseño estadístico de bloques al azar con cuatro repeticiones. El control de las malezas gramíneas Leptochloa mucronata y Urochloa fasciculata y la toxicidad a la caña de azúcar se evaluaron a los 15, 30 y 45 días después de la aplicación de los tratamientos (DDA. Los resultados indicaron que la adición de Agratex-HE a 2 o 2,5 l por 100 l de agua a la mezcla de ametrina + 2,4-D incrementó el control de L. mucronata y U. fasciculata, y que a la dosis de 2,5 l en 100 l de agua tuvo un efecto igual o mejor que el Agridex a la misma dosis. Ambos tratamientos incrementaron ligeramente la toxicidad ocasionada por los herbicidas a la caña de azúcar, pero ésta desapareció a los 45 DDA.

  7. COMPOSITIONAL PROPERTIES OF THREE FRESHWATER CARP SPECIES GROWN IN BRACKISH WATER

    Directory of Open Access Journals (Sweden)

    Muhammad Ismail Chughtai

    2015-06-01

    Full Text Available Three freshwater fish species viz. Labeo rohita, Cirrhinus mrigala and Gibelion catla, grown in brackish water ponds were analyzed for compositional properties to assess the potential of this habitat to produce nutritionally adequate fish for human consumption. Overall, the unsaturated fatty acids were lower in L. rohita (46.6% than saturated fatty acids; while in C. mrigala and G. catla, the unsaturated fatty acids were 50.4% and 58.2%, respectively. The most abundant saturated fatty acid in examined species was palmitic acid (C16:0, 23.7 to 34.1%; mono-unsaturated fatty acid was oleic acid (C18:1 19.6 to 31.7% and poly-unsaturated fatty acid linoleic acid (C18:2 9.46 to 13.3%. A reasonable amount of essential fatty acids ω-3 (5.80 to 9.26% and ω-6 (9.46 to 13.3% was also found in these species while growing in brackish water on salt tolerant forages like Leptochloa fusca, Brachiaria mutica and Kochia indica as supplemental feed. The ω-3/ω-6 ratio was calculated as 0.46, 0.80 and 0.69 in L. rohita, C. mrigala and G. catla, respectively. The maximum EPA (eicosapentaenoic acid, C20:5 was observed in C. mrigala (2.23%, followed by G. catla (1.62% and L. rohita (0.98%. While the DHA (docosahexanenoic acids, C22:6 was found maximum in G. catla (1.97% and minimum in C. mrigala (0.95%. The results of body composition indicated that L. rohita found maximum protein contents (19.2% with minimum total fats (1.28% while C. mrigala found maximum total fats (2.11% but minimum protein contents (18.3%. Overall results indicated that the Indian carps grown in brackish water have comparable chemical composition and nutritive value with the same species grown in freshwater medium.

  8. Histologia da embriogênese somática induzida em embriões de sementes maduras de Urochloa brizantha apomítica Histology of somatic embryogenesis induced in embryos of mature seeds of the apomictic Urochloa brizantha

    Directory of Open Access Journals (Sweden)

    Sandra Janeth Lenis-Manzano

    2010-05-01

    Full Text Available O objetivo deste trabalho foi descrever o processo de embriogênese somática em Urochloa brizantha cv. Marandu (Syn. Brachiaria brizantha cv. Marandu e fornecer subsídios para o aprimoramento dos métodos de cultura de tecidos e transformação genética. Calos embriogênicos foram obtidos por indução em embriões isolados de sementes maduras, e cultivados in vitro, em meio de cultura que continha ácido 2,4-diclorofenoxiacético, 6-benzilaminopurina e caseína hidrolisada. Plântulas foram regeneradas a partir dos calos embriogênicos, na presença de ácido naftalenoacético e cinetina. Esse processo foi descrito morfologicamente por observações em microscopia de luz de secções seriadas semifinas de tecidos fixados, ao longo do processo de regeneração, em FAA [formaldeído (40%: ácido acético glacial: etanol (50%, a 5:5:90 v/v/v]. Os embriões das sementes de U. brizantha cv. Marandu não têm epiblasto e são classificados como do tipo panicoide. Nas condições estabelecidas de cultura in vitro, calos embriogênicos e embriões somáticos de U. brizantha cv. Marandu, desenvolvem-se a partir de células meristemáticas do escutelo.The objective of this work was to describe the process of somatic embryogenesis in Urochloa brizantha cv. Marandu (Syn. Brachiaria brizantha cv. Marandu and to provide support for the improvement of tissue culture and genetic transformation methods. Embryogenic calli were obtained by induction in embryos isolated from mature seeds, and cultivated in vitro in culture medium containing 2,4-dichlorophenoxyacetic acid, 6-benzylaminopurine and hydrolyzed casein. Plantlets were regenerated from the embryogenic calli in the presence of naphthaleneacetic acid and kinetin. This process was described by morphological observations of serial semithin sections of tissues fixed along the regeneration process in FAA (40% formaldehyde: acetic acid: 50% ethanol, at 5:5:90 v/v/v, using light microscopy. Seed embryos of U

  9. A ˜50 ka record of monsoonal variability in the Darjeeling foothill region, eastern Himalayas

    Science.gov (United States)

    Ghosh, Ruby; Bera, Subir; Sarkar, Anindya; Paruya, Dipak Kumar; Yao, Yi-Feng; Li, Cheng-Sen

    2015-04-01

    Pollen, phytoliths and δ 13C signatures of soil organic matter from two fluvial sedimentary sequences of the Darjeeling foothill region, eastern Himalayas are used to portray palaeoclimatic oscillations and their impact on regional plant communities over the last ˜50 ka. Quantitative palaeoclimate estimation using coexistence approach on pollen data and other proxies indicate significant oscillations in precipitation during the late part of MIS 3 (46.4-25.9 ka), early and middle part of MIS 2 (25.9-15.6 ka), and 5.4 to 3.5 ka. Middle to late MIS 3 (ca 46.4-31 ka.) was characterized by a comparatively low monsoonal activity and slightly higher temperature than that during ca 31 ka onwards. Simultaneous expansion of deciduous trees and chloridoid grasses also imply a drier and warmer phase. Between 31 and 22.3 ka (late MIS 3 to mid-MIS 2), higher precipitation and a slightly cooler temperature led to an increase in evergreen elements over deciduous taxa and wet-loving panicoid grasses over dry-loving chloridoid grasses than earlier. After ca 22.3 ka, shrinking of forest cover, expansion of C4 chloridoid grasses, Asteraceae and Cheno-ams in the vegetation with lowering of temperature and precipitation characterized the onset of the LGM which continued till 18.3 ka. End of the LGM is manifested by a restoration in the forest cover and in the temperature and precipitation regime. Later, during 5.4 to 4.3 ka, a strong monsoonal activity supported a dense moist evergreen forest cover that subsequently declined during 4.3 to 3.5 ka. A further increase in deciduous elements and non-arboreals might be a consequence of reduced precipitation and higher temperature during this phase. A comparison between monsoonal rainfall, MAT and palaeoatmospheric CO2 with floral dynamics since last ˜50 ka indicates that these fluctuations in plant succession were mainly driven by monsoonal variations.

  10. Holistic and component plant phenotyping using temporal image sequence.

    Science.gov (United States)

    Das Choudhury, Sruti; Bashyam, Srinidhi; Qiu, Yumou; Samal, Ashok; Awada, Tala

    2018-01-01

    Image-based plant phenotyping facilitates the extraction of traits noninvasively by analyzing large number of plants in a relatively short period of time. It has the potential to compute advanced phenotypes by considering the whole plant as a single object (holistic phenotypes) or as individual components, i.e., leaves and the stem (component phenotypes), to investigate the biophysical characteristics of the plants. The emergence timing, total number of leaves present at any point of time and the growth of individual leaves during vegetative stage life cycle of the maize plants are significant phenotypic expressions that best contribute to assess the plant vigor. However, image-based automated solution to this novel problem is yet to be explored. A set of new holistic and component phenotypes are introduced in this paper. To compute the component phenotypes, it is essential to detect the individual leaves and the stem. Thus, the paper introduces a novel method to reliably detect the leaves and the stem of the maize plants by analyzing 2-dimensional visible light image sequences captured from the side using a graph based approach. The total number of leaves are counted and the length of each leaf is measured for all images in the sequence to monitor leaf growth. To evaluate the performance of the proposed algorithm, we introduce University of Nebraska-Lincoln Component Plant Phenotyping Dataset (UNL-CPPD) and provide ground truth to facilitate new algorithm development and uniform comparison. The temporal variation of the component phenotypes regulated by genotypes and environment (i.e., greenhouse) are experimentally demonstrated for the maize plants on UNL-CPPD. Statistical models are applied to analyze the greenhouse environment impact and demonstrate the genetic regulation of the temporal variation of the holistic phenotypes on the public dataset called Panicoid Phenomap-1. The central contribution of the paper is a novel computer vision based algorithm for

  11. Eficácia de imazethapyr e chlorimuron-ethyl em aplicações de pré-semeadura da cultura da soja Efficacy of imazethapyr and chlorimuron-ethyl in pre-sowing applications on soybean crop

    Directory of Open Access Journals (Sweden)

    S.O. Procópio

    2006-09-01

    Full Text Available O trabalho teve como objetivo avaliar a ação dos herbicidas imazethapyr e chlorimuron-ethyl em aplicações de pré-semeadura da cultura da soja, visando o controle das plantas daninhas presentes antes da semeadura e a redução na emergência de plantas daninhas durante o ciclo da cultura. O experimento foi conduzido a campo, em área de produção de soja em sistema de plantio direto. O delineamento experimental utilizado foi o de blocos casualizados, com quatro repetições, em esquema fatorial (4 x 4 + 1, sendo quatro tratamentos herbicidas [glyphosate (1,62 kg ha-1; glyphosate (1,62 kg ha-1 + imazethapyr (100 g ha-1; glyphosate (1,62 kg ha-1 + chlorimuron-ethyl (10 g ha-1; glyphosate (1,62 kg ha-1 + chlorimuron-ethyl (20 g ha-1] e quatro intervalos entre a aplicação dos herbicidas e a semeadura da soja (0, 1, 3 e 7 dias, mais uma testemunha não-dessecada. A adição dos herbicidas imazethapyr (100 g ha¹ e chlorimuron-ethyl (10 ou 20 g ha-1 junto ao glyphosate não melhorou o controle e também não diminuiu a rebrota posterior das plantas daninhas Digitaria insularis, Tridax procumbens e Leptochloa filiformis. Três dias antes da semeadura da soja foi o intervalo mínimo para que o controle dessas três espécies de plantas daninhas não fosse prejudicado pela operação de semeadura mecânica. Constatou-se que os tratamentos herbicidas não afetaram o número de plantas emergidas das espécies Sida santaremnensis, Digitaria insularis, Eleusine indica, Chamaesyce hirta, Bidens pilosa e Senna obtusifolia. Apenas para a espécie Althernantela tenella foi verificado que a adição de imazethapyr ou de chlorimuron-ethyl junto ao glyphosate reduziu a emergência dessa planta daninha na área, mostrando eficiência em pré-emergência. Todos os tratamentos herbicidas aplicados em pré-semeadura proporcionaram maior produtividade da cultura da soja em relação à testemunha não-dessecada, mas o incremento dos herbicidas imazethapyr e