WorldWideScience

Sample records for spotted owl subspecies

  1. Managing emerging threats to spotted owls

    Science.gov (United States)

    Ho Yi Wan; Joseph L. Ganey; Christina D. Vojta; Samuel A. Cushman

    2018-01-01

    The 3 spotted owl (Strix occidentalis) subspecies in North America (i.e., northern spotted owl [S. o. caurina], California spotted owl [S. o. occidentalis], Mexican spotted owl [S. o. lucida]) have all experienced population declines over the past century due to habitat loss and fragmentation from logging. Now, the emerging influences of climate change, high-severity...

  2. Blood parasites in Owls with conservation implications for the Spotted Owl (Strix occidentalis)

    Science.gov (United States)

    Ishak, H.D.; Dumbacher, J.P.; Anderson, N.L.; Keane, J.J.; Valkiunas, G.; Haig, S.M.; Tell, L.A.; Sehgal, R.N.M.

    2008-01-01

    The three subspecies of Spotted Owl (Northern, Strix occidentalis courina; California, S. o. occidentalis; and Mexican, S. o. lucida) are all threatened by habitat loss and range expansion of the Barred Owl (S. varia). An unaddressed threat is whether Barred Owls could be a source of novel strains of disease such as avian malaria (Plasmodium spp.) or other blood parasites potentially harmful for Spotted Owls. Although Barred Owls commonly harbor Plasmodium infections, these parasites have not been documented in the Spotted Owl. We screened 111 Spotted Owls, 44 Barred Owls, and 387 owls of nine other species for haemosporidian parasites (Leucocytozoon, Plasmodium, and Haemoproteus spp.). California Spotted Owls had the greatest number of simultaneous multi-species infections (44%). Additionally, sequencing results revealed that the Northern and California Spotted Owl subspecies together had the highest number of Leucocytozoon parasite lineages (n=17) and unique lineages (n=12). This high level of sequence diversity is significant because only one leucocytozoon species (L. danilewskyi) has been accepted as valid among all owls, suggesting that L. danilewskyi is a cryptic species. Furthermore, a Plasmodium parasite was documented in a Northern Spotted Owl for the first time. West Coast Barred Owls had a lower prevalence of infection (15%) when compared to sympatric Spotted Owls (S. o. caurina 52%, S. o. occidentalis 79%) and Barred Owls from the historic range (61%). Consequently, Barred Owls on the West Coast may have a competitive advantage over the potentially immune compromised Spotted Owls. ?? 2008 Ishak et al.

  3. Demographic response of northern spotted owls to barred owl removal

    Science.gov (United States)

    Diller, V. Lowell; Hamm, Keith A; Early, Desiree A; Lamphear, David W; Dugger, Katie M.; Yackulic, Charles B.; Schwarz, Carl J.; Carlson, Peter C.; McDonald, Trent L.

    2016-01-01

    Federally listed as threatened in 1990 primarily because of habitat loss, the northern spotted owl (Strix occidentalis caurina) has continued to decline despite conservation efforts resulting in forested habitat being reserved throughout its range. Recently, there is growing evidence the congeneric invasive barred owl (Strix varia) may be responsible for the continued decline primarily by excluding spotted owls from their preferred habitat. We used a long-term demographic study for spotted owls in coastal northern California as the basis for a pilot barred owl removal experiment. Our demography study used capture–recapture, reproductive output, and territory occupancy data collected from 1990 to 2013 to evaluate trends in vital rates and populations. We used a classic before-after-control-impact (BACI) experimental design to investigate the demographic response of northern spotted owls to the lethal removal of barred owls. According to the best 2-species dynamic occupancy model, there was no evidence of differences in barred or northern spotted owl occupancy prior to the initiation of the treatment (barred owl removal). After treatment, barred owl occupancy was lower in the treated relative to the untreated areas and spotted owl occupancy was higher relative to the untreated areas. Barred owl removal decreased spotted owl territory extinction rates but did not affect territory colonization rates. As a result, spotted owl occupancy increased in the treated area and continued to decline in the untreated areas. Prior to and after barred owl removal, there was no evidence that average fecundity differed on the 2 study areas. However, the greater number of occupied spotted owl sites on the treated areas resulted in greater productivity in the treated areas based on empirical counts of fledged young. Prior to removal, survival was declining at a rate of approximately 0.2% per year for treated and untreated areas. Following treatment, estimated survival was 0.859 for

  4. 78 FR 57171 - Experimental Removal of Barred Owls To Benefit Threatened Northern Spotted Owls; Record of...

    Science.gov (United States)

    2013-09-17

    ... spotted owls in many portions of the northern spotted owl's range (Pearson and Livezey 2003, p. 272... populations. Barred owls displace spotted owls from high-quality habitat (Kelley et al. 2003, p. 51; Pearson... management intervention, it is reasonable to expect that competition from barred owls may cause extirpation...

  5. 78 FR 44588 - Experimental Removal of Barred Owls To Benefit Threatened Northern Spotted Owls; Final...

    Science.gov (United States)

    2013-07-24

    ... spotted owl populations and to test the feasibility and efficiency of barred owl removal as a management... outnumber spotted owls in many portions of the northern spotted owl's range (Pearson and Livezey 2003, p.... 51; Pearson and Livezey 2003, p. 274; Courtney et al., pp. 7-27 through 7-31; Gremel 2005, pp. 9, 11...

  6. The effects of habitat, climate, and Barred Owls on long-term demography of Northern Spotted Owls

    Science.gov (United States)

    Dugger, Catherine; Forsman, Eric D.; Franklin, Alan B.; Davis, Raymond J.; White, Gary C.; Schwarz, Carl J.; Burnham, Kenneth P.; Nichols, James D.; Hines, James E.; Yackulic, Charles B.; Doherty, Paul F.; Bailey, Larissa; Clark, Darren A.; Ackers, Steven H.; Andrews, Lawrence S.; Augustine, Benjamin; Biswell, Brian L.; Blakesley, Jennifer; Carlson, Peter C.; Clement, Matthew J.; Diller, Lowell V.; Glenn, Elizabeth M.; Green, Adam; Gremel, Scott A.; Herter, Dale R.; Higley, J. Mark; Hobson, Jeremy; Horn, Rob B.; Huyvaert, Kathryn P.; McCafferty, Christopher; McDonald, Trent; McDonnell, Kevin; Olson, Gail S.; Reid, Janice A.; Rockweit, Jeremy; Ruiz, Viviana; Saenz, Jessica; Sovern, Stan G.

    2016-01-01

    covariates. In contrast, meta-analysis results suggested that Spotted Owl survival was higher across all study areas when the Pacific Decadal Oscillation (PDO) was in a warming phase and the Southern Oscillation Index (SOI) was negative, with a strongly negative SOI indicative of El Niño events. The best model that included the Barred Owl covariate (BO) was ranked 4th and also included the PDO covariate, but the BO effect was strongly negative. Our results indicated that Northern Spotted Owl populations were declining throughout the range of the subspecies and that annual rates of decline were accelerating in many areas. We observed strong evidence that Barred Owls negatively affected Spotted Owl populations, primarily by decreasing apparent survival and increasing local territory extinction rates. However, the amount of suitable owl habitat, local weather, and regional climatic patterns also were related to survival, occupancy (via colonization rate), recruitment, and, to a lesser extent, fecundity, although there was inconsistency in regard to which covariates were important for particular demographic parameters or across study areas. In the study areas where habitat was an important source of variation for Spotted Owl demographics, vital rates were generally positively associated with a greater amount of suitable owl habitat. However, Barred Owl densities may now be high enough across the range of the Northern Spotted Owl that, despite the continued management and conservation of suitable owl habitat on federal lands, the long-term prognosis for the persistence of Northern Spotted Owls may be in question without additional management intervention. Based on our study, the removal of Barred Owls from the Green Diamond Resources (GDR) study area had rapid, positive effects on Northern Spotted Owl survival and the rate of population change, supporting the hypothesis that, along with habitat conservation and management, Barred Owl removal may be able to slow or reverse

  7. Effects of post-fire logging on California spotted owl occupancy

    Directory of Open Access Journals (Sweden)

    Chad T. Hanson

    2018-01-01

    Full Text Available In fire-adapted forest ecosystems around the world, there has been growing concern about adverse impacts of post-fire logging on native biodiversity and ecological processes. This is also true in conifer forests of California, U.S.A. which are home to a rare and declining owl subspecies, the California spotted owl (Strix occidentalis occidentalis. While there has been recent concern about the California spotted owl occupancy in large fire areas where some territories have substantial high-severity fire effects, the influence of post-fire logging on the California spotted owl occupancy has been investigated very little, leading to some uncertainty about interpretation of conflicting results in different large fires. Research has found these owls preferentially select high-severity fire areas, characterised by high levels of snags and native shrubs, for foraging in forests that were not logged after fire, suggesting that removal of this foraging habitat might impact occupancy. The authors assessed the effect of post-fire logging and high-severity fire, on occupancy of this subspecies in eight large fire areas, within spotted owl sites with two different levels of high-severity fire effects. They found a significant adverse effect of such logging and no effect of high-severity fire alone. These results indicate it is post-fire logging, not large fires themselves, that poses a conservation threat to this imperilled species.

  8. Competitive interactions and resource partitioning between northern spotted owls and barred owls in western Oregon

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    Wiens, J. David; Anthony, Robert G.; Forsman, Eric D.

    2014-01-01

    The federally threatened northern spotted owl (Strix occidentalis caurina) is the focus of intensive conservation efforts that have led to much forested land being reserved as habitat for the owl and associated wildlife species throughout the Pacific Northwest of the United States. Recently, however, a relatively new threat to spotted owls has emerged in the form of an invasive competitor: the congeneric barred owl (S. varia). As barred owls have rapidly expanded their populations into the entire range of the northern spotted owl, mounting evidence indicates that they are displacing, hybridizing with, and even killing spotted owls. The range expansion by barred owls into western North America has made an already complex conservation issue even more contentious, and a lack of information on the ecological relationships between the 2 species has hampered recovery efforts for northern spotted owls. We investigated spatial relationships, habitat use, diets, survival, and reproduction of sympatric spotted owls and barred owls in western Oregon, USA, during 2007–2009. Our overall objective was to determine the potential for and possible consequences of competition for space, habitat, and food between these previously allopatric owl species. Our study included 29 spotted owls and 28 barred owls that were radio-marked in 36 neighboring territories and monitored over a 24-month period. Based on repeated surveys of both species, the number of territories occupied by pairs of barred owls in the 745-km2 study area (82) greatly outnumbered those occupied by pairs of spotted owls (15). Estimates of mean size of home ranges and core-use areas of spotted owls (1,843 ha and 305 ha, respectively) were 2–4 times larger than those of barred owls (581 ha and 188 ha, respectively). Individual spotted and barred owls in adjacent territories often had overlapping home ranges, but interspecific space sharing was largely restricted to broader foraging areas in the home range

  9. Population dynamics of spotted owls in the Sierra Nevada, California

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    Blakesley, J.A.; Seamans, M.E.; Conner, M.M.; Franklin, A.B.; White, Gary C.; Gutierrez, R.J.; Hines, J.E.; Nichols, J.D.; Munton, T.E.; Shaw, D.W.H.; Keane, J.J.; Steger, G.N.; McDonald, T.L.

    2010-01-01

    The California spotted owl (Strix occidentalis occidentalis) is the only spotted owl subspecies not listed as threatened or endangered under the United States Endangered Species Act despite petitions to list it as threatened. We conducted a meta-analysis of population data for 4 populations in the southern Cascades and Sierra Nevada, California, USA, from 1990 to 2005 to assist a listing evaluation by the United States Fish and Wildlife Service. Our study areas (from N to S) were on the Lassen National Forest (LAS), Eldorado National Forest (ELD), Sierra National Forest (SIE), and Sequoia and Kings Canyon National Parks (SKC). These study areas represented a broad spectrum of habitat and management conditions in these mountain ranges. We estimated apparent survival probability, reproductive output, and rate of population change for spotted owls on individual study areas and for all study areas combined (meta-analysis) using model selection or model-averaging based on maximum-likelihood estimation. We followed a formal protocol to conduct this analysis that was similar to other spotted owl meta-analyses. Consistency of field and analytical methods among our studies reduced confounding methodological effects when evaluating results. We used 991 marked spotted owls in the analysis of apparent survival. Apparent survival probability was higher for adult than for subadult owls. There was little difference in apparent survival between male and female owls. Model-averaged mean estimates of apparent survival probability of adult owls varied from 0.811 ?? 0.021 for females at LAS to 0.890 ?? 0.016 for males at SKC. Apparent survival increased over time for owls of all age classes at LAS and SIE, for adults at ELD, and for second-year subadults and adults at SKC. The meta-analysis of apparent survival, which included only adult owls, confirmed an increasing trend in survival over time. Survival rates were higher for owls on SKC than on the other study areas. We analyzed data

  10. Chapter 4: Northern spotted owl habitat and populations: Status and threats

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    Lesmeister, Damon B.; Davis, Ramond J; Singleton, Peter H; Wiens, David

    2018-01-01

    The northern spotted owl (Strix occidentalis caurina) was listed as threatened under the Endangered Species Act in 1990 (USFWS 1990). Providing adequate amounts of suitable forest cover to sustain the subspecies was a major component of the first recovery plan for northern spotted owls (USFWS 1992) and a driver in the basic reserve design and old-forest restoration under the Northwest Forest Plan (NWFP, or Plan) (USDA and USDI 1994). The reserve design included large contiguous blocks of late-successional forest, which was expected to be sufficient to provide habitat for many interacting pairs of northern spotted owls. As such, the selection of reserves generally favored areas with the highest quality old-growth

  11. Demography of Northern Spotted Owls in southwestern Oregon

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    Zabel, Cynthia J.; Salmons, Susan E.; Forsman, Eric D.; DeStefano, Stephen; Raphael, Martin G.; Gutierrez, R.J.

    1996-01-01

    Northern Spotted Owls (Strix occidentalis caurina) are associated with lower elevation, commercially valuable, late-successional coniferous forests in the Pacific Northwest. Meta-analyses of demographic parameters indicate that Northern Spotted Owl populations are declining throughout their range (Anderson and Burnham 1992, Burnham et al. this volume). Recent research has attempted to determine whether management activities have affected the viability of Spotted Owl populations, and results have led to development of conservation plans for the species (Dawson et al. 1987, Thomas et al. 1990, Murphy and Noon 1992, USDI 1992, Thomas et al. 1993b).In the Recovery Plan for the Northern Spotted Owl (USDI 1992b) threats to the species were identified as small population sizes, declining populations, limited amounts of habitat, continued loss and fragmentation of habitat, geographically isolated populations, and predation and competition from other avian species. Weather and fire are natural processes that also may affect reproductive success of Spotted Owls. Weather may be a factor in the high annual variability in fecundity of Spotted Owls, as has been suggested for other predatory bird species (Newton, 1979, 1986). However, these factors have not been addressed in previous studies of Spotted Owls.Our objectives were to estimate survival, fecundity, and annual rates of population change (l) for resident, territorial female Spotted Owls at two study areas in the coastal mountains of southwestern Oregon. We tested if the amount of rainfall was correlated with reproduction of Spotted Owls. While surveying for Spotted Owls, we documented the increased presence of Barred Owls (Strix varia), a potential competitor of Spotted Owls.

  12. Cover of tall trees best predicts California spotted owl habitat

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    Malcolm P. North; Jonathan T. Kane; Van R. Kane; Gregory P. Asner; William Berigan; Derek J. Churchill; Scott Conway; R.J. Gutiérrez; Sean Jeronimo; John Keane; Alexander Koltunov; Tina Mark; Monika Moskal; Thomas Munton; Zachary Peery; Carlos Ramirez; Rahel Sollmann; Angela White; Sheila Whitmore

    2017-01-01

    Restoration of western dry forests in the USA often focuses on reducing fuel loads. In the range of the spotted owl, these treatments may reduce canopy cover and tree density, which could reduce preferred habitat conditions for the owl and other sensitive species. In particular, high canopy cover (≥70%) has been widely reported to be an important feature of spotted owl...

  13. Food habits of Mexican Spotted Owls in Arizona

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    Joseph L. Ganey

    1992-01-01

    The Spotted Owl (Strix occidentalis) is most common in mature and old-growth coniferous forests throughout much of its range (Forsman et al. 1984, Laymon 1988, Ganey and Balda 1989a, Thomas et al. 1990). Proximate factors underlying habitat selection in Spotted Owls are understood poorly. Abundance and availability of food, however, may be a key...

  14. Survival and reproduction of radio-marked adult spotted owls.

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    C.C. Foster; E.D. Forsman; E.C. Meslow; G.S. Miller; J.A. Reid; F.F. Wagner; A.B. Carey; J.B. Lint

    1992-01-01

    We compared survival, reproduction, and body mass of radio-marked and non radio-marked spotted owls (Strix occidentalis) to determine if backpack radios influenced reproduction or survival. In most study areas and years, there were no differences (P > 0.05) in survival of males and females or in survival of radio-marked versus banded owls. There...

  15. Methods and materials, for locating and studying spotted owls.

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    Eric D. Forsman

    1983-01-01

    Nocturnal calling surveys are the most effective and most frequently used technique for locating spotted owls. Roosts and general nest locations may be located during the day by calling in suspected roost or nest areas. Specific nest trees are located by: (1) baiting with a live mouse to induce owls to visit the nest, (2) calling in suspected nest areas to stimulate...

  16. Spotted owl roost and nest site selection in northwestern California

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    J.A. Blakesley; A.B. Franklin; R.J. Gutierrez

    1992-01-01

    We directly observed roost and nest site selection in a population of northern spotted owls (Strix occidentalis caurina) in northwestern California during 1985-89. Because of potential biases caused by use of radio telemetry in previous studies, we examined habitat use relative to habitat availability at a level not previously reported for spotted...

  17. Modeling of site occupancy dynamics for northern spotted owls, with emphasis on the effects of barred owls

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    Olson, Gail S.; Anthony, Robert G.; Forsman, Eric D.; Ackers, Steven H.; Loschl, Peter J.; Reid, Janice A.; Dugger, Katie M.; Glenn, Elizabeth M.; Ripple, William J.

    2005-01-01

    Northern spotted owls (Strix occidentalis caurina) have been studied intensively since their listing as a threatened species by the U.S. Fish and Wildlife Service in 1990. Studies of spotted owl site occupancy have used various binary response measures, but most of these studies have made the assumption that detectability is perfect, or at least high and not variable. Further, previous studies did not consider temporal variation in site occupancy. We used relatively new methods for open population modeling of site occupancy that incorporated imperfect and variable detectability of spotted owls and allowed modeling of temporal variation in site occupancy, extinction, and colonization probabilities. We also examined the effects of barred owl (S. varia) presence on these parameters. We used spotted owl survey data from 1990 to 2002 for 3 study areas in Oregon, USA, and we used program MARK to develop and analyze site occupancy models. We found per visit detection probabilities averaged variable among study years and study areas. Site occupancy probabilities for owl pairs declined greatly on 1 study area and slightly on the other 2 areas. For all owls, including singles and pairs, site occupancy was mostly stable through time. Barred owl presence had a negative effect on spotted owl detection probabilities, and it had either a positive effect on local-extinction probabilities or a negative effect on colonization probabilities. We conclude that further analyses of spotted owls must account for imperfect and variable detectability and barred owl presence to properly interpret results. Further, because barred owl presence is increasing within the range of northern spotted owls, we expect to see further declines in the proportion of sites occupied by spotted owls.

  18. Modeling co-occurrence of northern spotted and barred owls: accounting for detection probability differences

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    Bailey, Larissa L.; Reid, Janice A.; Forsman, Eric D.; Nichols, James D.

    2009-01-01

    Barred owls (Strix varia) have recently expanded their range and now encompass the entire range of the northern spotted owl (Strix occidentalis caurina). This expansion has led to two important issues of concern for management of northern spotted owls: (1) possible competitive interactions between the two species that could contribute to population declines of northern spotted owls, and (2) possible changes in vocalization behavior and detection probabilities of northern spotted owls induced by presence of barred owls. We used a two-species occupancy model to investigate whether there was evidence of competitive exclusion between the two species at study locations in Oregon, USA. We simultaneously estimated detection probabilities for both species and determined if the presence of one species influenced the detection of the other species. Model selection results and associated parameter estimates provided no evidence that barred owls excluded spotted owls from territories. We found strong evidence that detection probabilities differed for the two species, with higher probabilities for northern spotted owls that are the object of current surveys. Non-detection of barred owls is very common in surveys for northern spotted owls, and detection of both owl species was negatively influenced by the presence of the congeneric species. Our results suggest that analyses directed at hypotheses of barred owl effects on demographic or occupancy vital rates of northern spotted owls need to deal adequately with imperfect and variable detection probabilities for both species.

  19. Conflicting perspectives on spotted owls, wildfire, and forest restoration

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    Joseph L. Ganey; Ho Yi Wan; Samuel A. Cushman; Christina D. Vojta

    2017-01-01

    Evidence of increasing fire extent and severity in the western US in recent decades has raised concern over the effects of fire on threatened species such as the spotted owl (Strix occidentalis Xantus de Vesey), which nests in forests with large trees and high canopy cover that are vulnerable to high-severity wildfire. A dichotomy of views exists on the impact of high-...

  20. Diets of California spotted owls in the Sierra National Forest

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    Thomas E. Munton; Kenneth D. Johnson; George N. Steger; Gary P. Eberlein

    2002-01-01

    From May 1987 through October 1992 and from July through August 1998, we studied diets of California spotted owls (Strix occidentalis occidentalis). Regurgitated pellets were collected at roost and nest sites between 1,000 and 7,600 ft elevation in the Sierra National Forest and were examined for remnant bones, feathers, and insect exoskeletons....

  1. Life-history tradeoffs and reproductive cycles in Spotted Owls

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    Stoelting, Ricka E.; Gutierrez, R.J.; Kendall, William L.; Peery, M. Zachariah

    2015-01-01

    The study of tradeoffs among life-history traits has long been key to understanding the evolution of life-history strategies. However, more recently, evolutionary ecologists have realized that reproductive costs have the potential to influence population dynamics. Here, we tested for costs of reproduction in the California Spotted Owl (Strix occidentalis occidentalis), and assessed whether costs of reproduction in year t − 1 on reproduction in year t could be responsible for regionally synchronized biennial cycles in reproductive output. Logistic regression analysis and multistate mark–recapture models with state uncertainty revealed that breeding reduced the likelihood of reproducing in the subsequent year by 16% to 38%, but had no influence on subsequent survival. We also found that costs of reproduction in year t − 1 were correlated with climatic conditions in year t, with evidence of higher costs during the dry phase of the El Niño–Southern Oscillation. Using a simulation-based population model, we showed that strong reproductive costs had the potential to create biennial cycles in population-level reproductive output; however, estimated costs of reproduction appeared to be too small to explain patterns observed in Spotted Owls. In the absence of strong reproductive costs, we hypothesize that observed natural cycles in the reproductive output of Spotted Owls are related to as-yet-unmeasured, regionally concordant fluctuations in environmental conditions or prey resources. Despite theoretical evidence for demographic effects, our analyses illustrate that linking tradeoffs to actual changes in population processes will be challenging because of the potential confounding effects of individual and environmental variation.

  2. Association of weather and nest-site structure with reproductive success in California spotted owls

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    Malcolm North; George Steger; Renee Denton; Gary Eberlein; Tom Munton; Ken Johnson

    2000-01-01

    Although the spotted owl (Strix occidentalis) has been intensively studied, factors influencing its reproduction are not well understood. We examined a 9-year demographic study of 51-86 pairs of the California spotted owl (S. o. occidentalis), weather conditions, and forest structure at nest sites in oak (Quercus sp.) woodland and...

  3. Nest reuse by Northern Spotted Owls on the east slope of the Cascade Range, Washington

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    Stan G. Sovern; Margaret Taylor; Eric D. Forsman

    2011-01-01

    During a long-term demography study of Northern Spotted Owls (Strix occidentalis caurina) in the eastern Cascade Range of Washington State in 1989 to 2008, we documented 276 nests of Northern Spotted Owls at 73 different territories. Of these nests, 90.2% were on platforms, mostly in clumps of deformed limbs caused by dwarf mistletoe (primarily...

  4. Avian trichomonosis in spotted owls (Strix occidentalis: Indication of opportunistic spillover from prey

    Directory of Open Access Journals (Sweden)

    Krysta H. Rogers

    2016-12-01

    Full Text Available Avian trichomonosis, caused by the flagellated protozoan parasite Trichomonas gallinae, has variable pathogenicity among bird species ranging from asymptomatic infections to severe disease periodically manifesting in epidemic mortality. Traditionally, columbids are identified as highly susceptible to infection with occasional spillover into raptors that prey on infected birds. We identified avian trichomonosis in two dead California spotted owls (Strix occidentalis occidentalis and three dead northern spotted owls (S. o. caurina in California during 2011–2015; infection was confirmed in four owls by PCR. Pathologic lesions associated with trichomonosis in the owls included caseonecrotic lesions of the upper palate accompanied by oropharyngitis, cellulitis, myositis, and/or sinusitis. Spotted owls are known to mainly feed on small mammals; therefore, the source of infection as well as the significance of the disease in spotted owls is unclear. These owl trichomonosis cases coincided temporally and spatially with three trichomonosis epidemics in band-tailed pigeons (Patagioenas fasciata monilis. The same parasite, T. gallinae subtype A2, was isolated from the spotted owls and band-tailed pigeons, suggesting the owls became infected when opportunistically feeding on pigeons during mortality events. Avian trichomonosis is an important factor in the decline of the Pacific Coast band-tailed pigeon population with near-annual mortality events during the last 10 years and could have conservation implications for raptor species at risk, particularly those that are facing multiple threats.

  5. Effects of experimental removal of Barred Owls on population demography of Northern Spotted Owls in Washington and Oregon—2017 progress report

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    Wiens, J. David; Dugger, Katie M.; Lesmeister, Damon B.; Dilione, Krista E.; Simon, David C.

    2018-05-21

    Populations of Northern Spotted Owls (Strix occidentalis caurina; hereinafter referred to as Spotted Owl) are declining throughout this subspecies’ geographic range. Evidence indicates that competition with invading populations of Barred Owls (S. varia) has contributed significantly to those declines. A pilot study in California showed that localized removal of Barred Owls coupled with conservation of suitable forest conditions can slow or even reverse population declines of Spotted Owls. It remains unknown, however, whether similar results can be obtained in areas with different forest conditions, greater densities of Barred Owls, and fewer remaining Spotted Owls. During 2015–17, we initiated a before-after-control-impact (BACI) experiment at three study areas in Oregon and Washington to determine if removal of Barred Owls can improve population trends of Spotted Owls. Each study area had at least 20 years of pre-treatment demographic data on Spotted Owls, and represented different forest conditions occupied by the two owl species in the Pacific Northwest. This report describes research accomplishments and preliminary results from the first 2.5 years (March 2015–August 2017) of the planned 5-year experiment.

  6. Using detection dogs to conduct simultaneous surveys of northern spotted (Strix occidentalis caurina and barred owls (Strix varia.

    Directory of Open Access Journals (Sweden)

    Samuel K Wasser

    Full Text Available State and federal actions to conserve northern spotted owl (Strix occidentalis caurina habitat are largely initiated by establishing habitat occupancy. Northern spotted owl occupancy is typically assessed by eliciting their response to simulated conspecific vocalizations. However, proximity of barred owls (Strix varia-a significant threat to northern spotted owls-can suppress northern spotted owl responsiveness to vocalization surveys and hence their probability of detection. We developed a survey method to simultaneously detect both species that does not require vocalization. Detection dogs (Canis familiaris located owl pellets accumulated under roost sites, within search areas selected using habitat association maps. We compared success of detection dog surveys to vocalization surveys slightly modified from the U.S. Fish and Wildlife Service's Draft 2010 Survey Protocol. Seventeen 2 km × 2 km polygons were each surveyed multiple times in an area where northern spotted owls were known to nest prior to 1997 and barred owl density was thought to be low. Mitochondrial DNA was used to confirm species from pellets detected by dogs. Spotted owl and barred owl detection probabilities were significantly higher for dog than vocalization surveys. For spotted owls, this difference increased with number of site visits. Cumulative detection probabilities of northern spotted owls were 29% after session 1, 62% after session 2, and 87% after session 3 for dog surveys, compared to 25% after session 1, increasing to 59% by session 6 for vocalization surveys. Mean detection probability for barred owls was 20.1% for dog surveys and 7.3% for vocal surveys. Results suggest that detection dog surveys can complement vocalization surveys by providing a reliable method for establishing occupancy of both northern spotted and barred owl without requiring owl vocalization. This helps meet objectives of Recovery Actions 24 and 25 of the Revised Recovery Plan for the

  7. Comparative habitat use of sympatric Mexican spotted and great horned owls

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    Joseph L. Ganey; William M. Block; Jeffrey S. Jenness; Randolph A. Wilson

    1997-01-01

    To provide information on comparative habitat use, we studied radiotagged Mexican spotted owls (Strix occidentalis lucida: n = 13) and great horned owls (Bubo virginianus: n = 4) in northern Arizona. Home-range size (95% adaptive kernel estimate) did not differ significantly between species during either the breeding or nonbreeding...

  8. An indirect dispersal pathway for spotted knapweed seeds via deer mice and great-horned owls

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    Dean E. Pearson; Yvette K. Ortega

    2001-01-01

    Spotted Knapweed (Centaurea maculosa) seeds were found in the pellets of Great Horned Owls (Bubo virginianus). That apparently resulted from owls preying upon Deer Mice (Peromyscus maniculatus) which had incidentally consumed knapweed seeds while foraging for the larvae of biological control agents within...

  9. California Spotted Owl (Strix occidentalis occidentalis) habitat use patterns in a burned landscape

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    Eyes, Stephanie; Roberts, Susan L.; Johnson, Matthew D.

    2017-01-01

    Fire is a dynamic ecosystem process of mixed-conifer forests of the Sierra Nevada, but there is limited scientific information addressing wildlife habitat use in burned landscapes. Recent studies have presented contradictory information regarding the effects of stand-replacing wildfires on Spotted Owls (Strix occidentalis) and their habitat. While fire promotes heterogeneous forest landscapes shown to be favored by owls, high severity fire may create large canopy gaps that can fragment the closed-canopy habitat preferred by Spotted Owls. We used radio-telemetry to determine whether foraging California Spotted Owls (S. o. occidentalis) in Yosemite National Park, California, USA, showed selection for particular fire severity patch types within their home ranges. Our results suggested that Spotted Owls exhibited strong habitat selection within their home ranges for locations near the roost and edge habitats, and weak selection for lower fire severity patch types. Although owls selected high contrast edges with greater relative probabilities than low contrast edges, we did not detect a statistical difference between these probabilities. Protecting forests from stand-replacing fires via mechanical thinning or prescribed fire is a priority for management agencies, and our results suggest that fires of low to moderate severity can create habitat conditions within California Spotted Owls' home ranges that are favored for foraging.

  10. Metabolic rate and evaporative water loss of Mexican Spotted and Great Horned Owls

    Science.gov (United States)

    Joseph L. Ganey; Russell P. Balda; Rudy M. King

    1993-01-01

    We measured rates of oxygen consumption and evaporative water loss (EWL) of Mexican Spotted (Strix occidentalis lucida) and Great Horned (Bubo virginianus) owls in Arizona. Basal metabolic rate averaged 0.84 ccO2. g-1. h-1...

  11. Estimating inbreeding rates in Northern Spotted Owls: insights from pedigrees and spatio-demographic models

    Science.gov (United States)

    The federally-threatened Northern Spotted Owl (Strix occidentalis caurina) has a substantial influence on management of federal lands. Despite decades of investigation, important details about its status and habits remain unknown. In particular, determining the frequency of inbre...

  12. The effects of habitat, climate, and Barred Owls on long-term demography of Northern Spotted Owls

    Science.gov (United States)

    Katie M. Dugger; Eric D. Forsman; Alan B. Franklin; Raymond J. Davis; Gary C. White; Carl J. Schwarz; Kenneth P. Burnham; James D. Nichols; James E. Hines; Charles B. Yackulic; Paul F. Doherty; Larissa Bailey; Darren A. Clark; Steven H. Ackers; Lawrence S. Andrews; Benjamin Augustine; Brian L. Biswell; Jennifer Blakesley; Peter C. Carlson; Matthew J. Clement; Lowell V. Diller; Elizabeth M. Glenn; Adam Green; Scott A. Gremel; Dale R. Herter; J. Mark Higley; Jeremy Hobson; Rob B. Horn; Kathryn P. Huyvaert; Christopher McCafferty; Trent McDonald; Kevin McDonnell; Gail S. Olson; Janice A. Reid; Jeremy Rockweit; Viviana Ruiz; Jessica Saenz; Stan G. Sovern

    2016-01-01

    Estimates of species’ vital rates and an understanding of the factors affecting those parameters over time and space can provide crucial information for management and conservation. We used mark–recapture, reproductive output, and territory occupancy data collected during 1985–2013 to evaluate population processes of Northern Spotted Owls (Strix occidentalis...

  13. Home range characteristics of Mexican Spotted Owls in the Rincon Mountains, Arizona

    Science.gov (United States)

    Willey, David W.; van Riper, Charles

    2014-01-01

    We studied a small isolated population of Mexican Spotted Owls (Strix occidentalis lucida) from 1996–1997 in the Rincon Mountains of Saguaro National Park, southeastern Arizona, USA. All mixed-conifer and pine-oak forest patches in the park were surveyed for Spotted Owls, and we located, captured, and radio-tagged 10 adult birds representing five mated pairs. Using radio-telemetry, we examined owl home range characteristics, roost habitat, and monitored reproduction within these five territories. Breeding season (Mar–Sep) home range size for 10 adult owls (95% adaptive kernel isopleths) averaged 267 ha (±207 SD), and varied widely among owls (range 34–652 ha). Mean home range size for owl pairs was 478 ha (±417 ha SD), and ranged from 70–1,160 ha. Owls that produced young used smaller home ranges than owls that had no young. Six habitat variables differed significantly between roost and random sites, including: percent canopy cover, number of trees, number of vegetation layers, average height of trees, average diameter of trees, and tree basal area. Radio-marked owls remained in their territories following small prescribed management fires within those territories, exhibiting no proximate effects to the presence of prescribed fire.

  14. Effects of experimental removal of barred owls on population demography of northern spotted owls in Washington and Oregon—2015 progress report

    Science.gov (United States)

    Wiens, J. David; Dugger, Katie M.; Lewicki, Krista E.; Simon, David C.

    2016-03-14

    Evidence indicates that competition with newly established barred owls (Strix varia) is causing rapid declines in populations of northern spotted owls (Strix occidentalis caurina), and that the longterm persistence of spotted owls may be in question without additional management intervention. A pilot study in California showed that lethal removal of barred owls in combination with habitat conservation may be able to slow or even reverse population declines of spotted owls at local scales, but it remains unknown whether similar results can be obtained in larger areas with different forest conditions and where barred owls are more abundant. In 2015, we implemented a before-after-controlimpact (BACI) experimental design on two study areas in Oregon and Washington with at least 20 years of pre-treatment demographic data on spotted owls to determine if removal of barred owls can improve population trends of spatially associated spotted owls. Here we provide an overview of our research accomplishments and preliminary results in Oregon and Washington in 2015.

  15. Science verses political reality in delisting criteria for a threatened species: The Mexican spotted owl experience

    Science.gov (United States)

    Gary C. White; William M. Block; Joseph L. Ganey; William H. Moir; James P. Ward; Alan B. Franklin; Steven L. Spangle; Sarah E. Rinkevich; J. Robert Vahle; Frank P. Howe; James L. Dick

    1999-01-01

    The Mexican spotted owl (Strix occidentalis lucida) was listed as a threatened species under the Endangered Species Act (ESA) in April 1993 (USDI 1993). Concomitant with the listing of the owl, a recovery team was appointed to develop a plan to recover the owl, allowing for its removal from the list of threatened and endangered species. The recovery plan - "the...

  16. Spotted owl ecology: theory and methodology—a reply to Rosenberg et al.

    Science.gov (United States)

    A.B. Carey

    1995-01-01

    In their remarks on the study of Spotted Owls (Strix occidentalis) by Carey et al. (1992). Rosenberg et al. (1994) questioned the appropriateness of certain analyses and methods, and specific interpretation of the results. Herein, I respond to the comments of Rosenberg et al. (1994), which are summarized in italics.Sample sizes were nor...

  17. Late-successional forests and northern spotted owls: how effective is the Northwest Forest Plan?

    Science.gov (United States)

    Miles Hemstrom; Martin G. Raphael

    2000-01-01

    This paper describes the late-successional and old-growth forest and the northern spotted owl effectiveness monitoring plans for the Northwest Forest Plan. The effectiveness monitoring plan for late-successional and old-growth forests will track changes in forest spatial distribution, and within-stand structure and composition, and it will predict future trends.

  18. Mapping sources, sinks, and connectivity using a simulation model of Northern Spotted Owls

    Science.gov (United States)

    This is a study of source-sink dynamics at a landscape scale. In conducting the study, we make use of a mature simulation model for the northern spotted owl (Strix occidentalis caurina) that was developed as part of the US Fish and Wildlife Service’s most recent recovery plannin...

  19. 77 FR 50526 - Proposed Safe Harbor Agreement for the Northern Spotted Owl, Skamania, Klickitat, and Yakima...

    Science.gov (United States)

    2012-08-21

    ... possibly that spotted owls are not responding to traditional survey methods. As of 2011, only one site... the following methods. You may request hard copies or a CD-ROM of the documents. Email: [email protected] marginal habitat,'' if the conditions associated with that habitat are verified by surveys using...

  20. Abundance and population characteristics of Northern Spotted Owls (Strix occidentalis caurina) in Olympic National Park, Washington

    Science.gov (United States)

    D. Erran Seaman

    1997-01-01

    We monitored the threatened Northern Spotted Owl (Strix occidentalis caurina) in Olympic National Park from 1992 through 1996. We used a stratified random sampling scheme to survey 35 plots totaling 236 km?, approximately 10 percent of the forested area of the park.

  1. Models for mapping potential habitat at landscape scales: an example using northern spotted owls.

    Science.gov (United States)

    William C. McComb; Michael T. McGrath; Thomas A. Spies; David. Vesely

    2002-01-01

    We are assessing the potential for current and alternative policies in the Oregon Coast Range to affect habitat capability for a suite of forest resources. We provide an example of a spatially explicit habitat capability model for northern spotted owls (Strix occidentalis caurina)to illustrate the approach we are taking to assess potential changes...

  2. Management of the spotted owl: a case history in conservation biology

    Science.gov (United States)

    B.R. Noon; K.S. McKelvey

    1996-01-01

    Official conservation efforts for the northern spotted owl began in the United States in 1975 when it was declared “threatened” in the state of Oregon; efforts continued in a sporadic and unsystematic way through the 1980s. In 1989 the Interagency Scientific Committee (ISC) was established by Congress and charged with the development of a scientifically defensible...

  3. Developing and managing sustainable forest ecosystems for spotted owls in the Sierra Nevada

    Science.gov (United States)

    J. Verner; K.S. McKelvey

    1994-01-01

    Studies of the California spotted owl have revealed significant selection for habitats with large, old trees; relatively high basal areas of snags; and relatively high biomass in large, downed logs. Based on planning documents for national forests in the Sierra Nevada, we projected declining amounts of older-forest attributes. Region 5 has adopted measures to retain...

  4. Modeling demographic performance of northern spotted owls relative to forest habitat in Oregon

    Science.gov (United States)

    Olson, Gail S.; Glenn, Elizabeth M.; Anthony, Robert G.; Forsman, Eric D.; Reid, Janice A.; Loschl, Peter J.; Ripple, William J.

    2004-01-01

    Northern spotted owls (Strix occidentalis caurina) are known to be associated with late-successional forests in the Pacific Northwest of the United States, but the effects of habitat on their demographic performance are relatively unknown. We developed statistical models relating owl survival and productivity to forest cover types within the Roseburg Study Area in the Oregon Coast Range of Oregon, USA. We further combined these demographic parameters using a Leslie-type matrix to obtain an estimate of habitat fitness potential for each owl territory (n = 94). We used mark–recapture methods to develop models for survival and linear mixed models for productivity. We measured forest composition and landscape patterns at 3 landscape scales centered on nest and activity sites within owl territories using an aerial photo-based map and a Geographic Information System (GIS). We also considered additional covariates such as age, sex, and presence of barred owls (Strix varia), and seasonal climate variables (temperature and precipitation) in our models. We used Akaike's Information Criterion (AIC) to rank and compare models. Survival had a quadratic relationship with the amount of late- and mid-seral forests within 1,500 m of nesting centers. Survival also was influenced by the amount of precipitation during the nesting season. Only 16% of the variability in survival was accounted for by our best model, but 85% of this was due to the habitat variable. Reproductive rates fluctuated biennially and were positively related to the amount of edge between late- and mid-seral forests and other habitat classes. Reproductive rates also were influenced by parent age, amount of precipitation during nesting season, and presence of barred owls. Our best model accounted for 84% of the variability in productivity, but only 3% of that was due to the habitat variable. Estimates of habitat fitness potential (which may range from 0 to infinity) for the 94 territories ranged from 0.74 to 1

  5. Potential influences of climate and nest structure on spotted owl reproductive success: a biophysical approach.

    Directory of Open Access Journals (Sweden)

    Jeremy T Rockweit

    Full Text Available Many bird species do not make their own nests; therefore, selection of existing sites that provide adequate microclimates is critical. This is particularly true for owls in north temperate climates that often nest early in the year when inclement weather is common. Spotted owls use three main types of nest structures, each of which are structurally distinct and may provide varying levels of protection to the eggs or young. We tested the hypothesis that spotted owl nest configuration influences nest microclimate using both experimental and observational data. We used a wind tunnel to estimate the convective heat transfer coefficient (h(c of eggs in 25 potential nest configurations that mimicked 2 nest types (top-cavity and platform nests, at 3 different wind speeds. We then used the estimates of h(c in a biophysical heat transfer model to estimate how long it would take unattended eggs to cool from incubation temperature (~36 °C to physiological zero temperature (PZT; ~26 °C under natural environmental conditions. Our results indicated that the structural configuration of nests influences the cooling time of the eggs inside those nests, and hence, influences the nest microclimate. Estimates of time to PZT ranged from 10.6 minutes to 33.3 minutes. Nest configurations that were most similar to platform nests always had the fastest egg cooling times, suggesting that platform nests were the least protective of those nests we tested. Our field data coupled with our experimental results suggested that nest choice is important for the reproductive success of owls during years of inclement weather or in regions characterized by inclement weather during the nesting season.

  6. Demography of the California spotted owl in the Sierra National Forest and Sequoia/Kings Canyon National Parks

    Science.gov (United States)

    George N. Steger; Thomas E. Munton; Kenneth D. Johnson; Gary P. Eberlein

    2002-01-01

    Nine years (1990–1998) of demographic data on California spotted owls (Strix occidentalis occidentalis) in two study areas on the western slopes of the Sierra Nevada—one in the Sierra National Forest (SNF), the other in Sequoia/Kings Canyon National Parks (SNP)—are summarized. Numbers of territorial owls fluctuated from 85 to 50 in SNF and 80 to 58...

  7. Influence of primary prey on home-range size and habitat-use patterns of northern spotted owls (Strix occidentalis caurina)

    Science.gov (United States)

    Cynthia J. Zabel; Kevin S. McKelvey; James P. Ward

    1995-01-01

    Correlations between the home-range size of northern spotted owls (Strix occidentalis caurina) and proportion of their range in old-growth forest have been reported, but there are few data on the relationship between their home-range size and prey. The primary prey of spotted owls are wood rats and northern flying squirrels (Glaucomys sabrinus). Wood...

  8. Multistate Models Reveal Long-Term Trends of Northern Spotted Owls in the Absence of a Novel Competitor.

    Directory of Open Access Journals (Sweden)

    Andrew J Kroll

    Full Text Available Quantifying spatial and temporal variability in population trends is a critical aspect of successful management of imperiled species. We evaluated territory occupancy dynamics of northern spotted owls (Strix occidentalis caurina, California, USA, 1990-2014. The study area possessed two unique aspects. First, timber management has occurred for over 100 years, resulting in dramatically different forest successional and structural conditions compared to other areas. Second, the barred owl (Strix varia, an exotic congener known to exert significant negative effects on spotted owls, has not colonized the study area. We used a Bayesian dynamic multistate model to evaluate if territory occupancy of reproductive spotted owls has declined as in other study areas. The state-space approach for dynamic multistate modeling imputes the number of territories for each nesting state and allows for the estimation of longer-term trends in occupied or reproductive territories from longitudinal studies. The multistate approach accounts for different detection probabilities by nesting state (to account for either inherent differences in detection or for the use of different survey methods for different occupancy states and reduces bias in state assignment. Estimated linear trends in the number of reproductive territories suggested an average loss of approximately one half territory per year (-0.55, 90% CRI: -0.76, -0.33, in one management block and a loss of 0.15 per year (-0.15, 90% CRI: -0.24, -0.07, in another management block during the 25 year observation period. Estimated trends in the third management block were also negative, but substantial uncertainty existed in the estimate (-0.09, 90% CRI: -0.35, 0.17. Our results indicate that the number of territories occupied by northern spotted owl pairs remained relatively constant over a 25 year period (-0.07, 90% CRI: -0.20, 0.05; -0.01, 90% CRI: -0.19, 0.16; -0.16, 90% CRI: -0.40, 0.06. However, we cannot exclude

  9. Multistate Models Reveal Long-Term Trends of Northern Spotted Owls in the Absence of a Novel Competitor.

    Science.gov (United States)

    Kroll, Andrew J; Jones, Jay E; Stringer, Angela B; Meekins, Douglas J

    2016-01-01

    Quantifying spatial and temporal variability in population trends is a critical aspect of successful management of imperiled species. We evaluated territory occupancy dynamics of northern spotted owls (Strix occidentalis caurina), California, USA, 1990-2014. The study area possessed two unique aspects. First, timber management has occurred for over 100 years, resulting in dramatically different forest successional and structural conditions compared to other areas. Second, the barred owl (Strix varia), an exotic congener known to exert significant negative effects on spotted owls, has not colonized the study area. We used a Bayesian dynamic multistate model to evaluate if territory occupancy of reproductive spotted owls has declined as in other study areas. The state-space approach for dynamic multistate modeling imputes the number of territories for each nesting state and allows for the estimation of longer-term trends in occupied or reproductive territories from longitudinal studies. The multistate approach accounts for different detection probabilities by nesting state (to account for either inherent differences in detection or for the use of different survey methods for different occupancy states) and reduces bias in state assignment. Estimated linear trends in the number of reproductive territories suggested an average loss of approximately one half territory per year (-0.55, 90% CRI: -0.76, -0.33), in one management block and a loss of 0.15 per year (-0.15, 90% CRI: -0.24, -0.07), in another management block during the 25 year observation period. Estimated trends in the third management block were also negative, but substantial uncertainty existed in the estimate (-0.09, 90% CRI: -0.35, 0.17). Our results indicate that the number of territories occupied by northern spotted owl pairs remained relatively constant over a 25 year period (-0.07, 90% CRI: -0.20, 0.05; -0.01, 90% CRI: -0.19, 0.16; -0.16, 90% CRI: -0.40, 0.06). However, we cannot exclude small

  10. A quantitative evaluation of the conservation umbrella of spotted owl management areas in the Sierra Nevada.

    Directory of Open Access Journals (Sweden)

    Ryan D Burnett

    Full Text Available Whether by design or default, single species management often serves as an umbrella for species with similar habitat requirements. In recent decades the focus of National Forest management in the Sierra Nevada of California has shifted towards increasing closed canopy mature forest conditions through the protection of areas occupied by the California Spotted Owl (Strix occidentalis occidentalis. To evaluate the implications of these habitat changes and the potential umbrella resulting from a system of owl reserves on the broader avian community, we estimated occupancy of birds inside and outside of Spotted Owl Home Range Core Areas in northeastern California. We used point count data in a multi-species hierarchical Bayesian model incorporating the detection history of 81 species over a two-year time period (2005-2006. A small set of vegetation cover and topography covariates were included in the model to account for broad differences in habitat conditions, as well as a term identifying whether or not a site was within a Core Area. Seventeen species had a negative Core Area effect, seven had a positive effect, and the rest were not significant. Estimated species richness was significantly different with 23.1 species per 100 m radius circle outside Core Areas and 21.7 inside Core Areas. The majority of the species negatively associated with Core Areas are tied to early successional and other disturbance-dependent habitats. Conservation and climate vulnerability rankings were mixed. On average we found higher scores (greater risk for the species positively associated with Core Areas, but a larger number of species with the highest scores were negatively associated with Core Areas. We discuss the implications for managing the Sierra Nevada ecosystem and illustrate the role of monitoring broader suites of species in guiding management of large complex ecosystems.

  11. Northern Spotted Owl (Strix occidentalis caurina) Genome: Divergence with the Barred Owl (Strix varia) and Characterization of Light-Associated Genes.

    Science.gov (United States)

    Hanna, Zachary R; Henderson, James B; Wall, Jeffrey D; Emerling, Christopher A; Fuchs, Jérôme; Runckel, Charles; Mindell, David P; Bowie, Rauri C K; DeRisi, Joseph L; Dumbacher, John P

    2017-10-01

    We report here the assembly of a northern spotted owl (Strix occidentalis caurina) genome. We generated Illumina paired-end sequence data at 90× coverage using nine libraries with insert lengths ranging from ∼250 to 9,600 nt and read lengths from 100 to 375 nt. The genome assembly is comprised of 8,108 scaffolds totaling 1.26 × 109 nt in length with an N50 length of 3.98 × 106 nt. We calculated the genome-wide fixation index (FST) of S. o. caurina with the closely related barred owl (Strix varia) as 0.819. We examined 19 genes that encode proteins with light-dependent functions in our genome assembly as well as in that of the barn owl (Tyto alba). We present genomic evidence for loss of three of these in S. o. caurina and four in T. alba. We suggest that most light-associated gene functions have been maintained in owls and their loss has not proceeded to the same extent as in other dim-light-adapted vertebrates. © The Author 2017. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

  12. 76 FR 38575 - Endangered and Threatened Wildlife and Plants; Revised Recovery Plan for the Northern Spotted Owl...

    Science.gov (United States)

    2011-07-01

    ... document availability: revised recovery plan. SUMMARY: We, the U.S. Fish and Wildlife Service, announce the... concluded that the integrity of the agency decisionmaking process for the spotted owl recovery plan was... DEPARTMENT OF THE INTERIOR Fish and Wildlife Service 50 CFR Part 17 [FWS-R1-ES-2011-N020; 10120...

  13. Food habits of the Northern Spotted Owl (Strix occidentalis caurina) at six nest sites in Washington?s east Cascades

    Science.gov (United States)

    Kenneth R. Bevis; Jo Ellen Richards; Gina M. King; Eric E. Hanson

    1997-01-01

    This paper reports on 245 pellet samples containing 479 identified prey items collected at six Northern Spotted Owl (Strix occidentalis caurina) breeding sites in the eastern portion of its range. The majority of prey (biomass) came from four species; northern flying squirrels (Glaucomys sabrinus), bushy-tailed woodrats (...

  14. The scientific basis for modeling Northern Spotted Owl habitat: A response to Loehle, Irwin, Manly, and Merrill

    Science.gov (United States)

    Jeffrey R. Dunk; Brian Woodbridge; Elizabeth M. Glenn; Raymond J. Davis; Katherine Fitzgerald; Paul Henson; David W. LaPlante; Bruce G. Marcot; Barry R. Noon; Martin G. Raphael; Nathan H. Schumaker; Brendan. White

    2015-01-01

    The U.S. Fish and Wildlife Service recently revised the recovery plan (USFWS, 2011) and designated Critical Habitat (USFWS, 2012a) for the Northern Spotted Owl (Strix occidentalis caurina). The Critical Habitat designation was based in part on a map of relative habitat suitability that was developed by USFWS (2011, 2012b) for this purpose. Loehle...

  15. The contribution of federal and nonfederal habitat to persistence of the northern spotted owl on the Olympic Peninsula, Washington: report of the reanalysis team.

    Science.gov (United States)

    Richard S. Holthausen; Martin G. Raphael; Kevin S. McKelvey; Eric D. Forsman; Edward E. Starkey; D. Erran. Seaman

    1995-01-01

    We analyzed likely patterns of distribution and persistence of northern spotted owls (Strix occidentalis caurina) on the Olympic Peninsula. Analysis focused on the effects of Federal habitat under provisions of the Northwest Forest Plan; additional benefits to the owl population of different levels of habitat retention on non-Federal lands; effects of establishing a...

  16. Effects of forest management on California Spotted Owls: implications for reducing wildfire risk in fire‐prone forests.

    Science.gov (United States)

    Tempel, Douglas J; Gutiérrez, R J; Whitmore, Sheila A; Reetz, Matthew J; Stoelting, Ricka E; Berigan, William J; Seamans, Mark E; Zachariah Peery, M

    Management of many North American forests is challenged by the need to balance the potentially competing objectives of reducing risks posed by high-severity wildfires and protecting threatened species. In the Sierra Nevada, California, concern about high-severity fires has increased in recent decades but uncertainty exists over the effects of fuel-reduction treatments on species associated with older forests, such as the California Spotted Owl (Strix occidentalis occidentalis). Here, we assessed the effects of forest conditions, fuel reductions, and wildfire on a declining population of Spotted Owls in the central Sierra Nevada using 20 years of demographic data collected at 74 Spotted Owl territories. Adult survival and territory colonization probabilities were relatively high, while territory extinction probability was relatively low, especially in territories that had relatively large amounts of high canopy cover (≥70%) forest. Reproduction was negatively associated with the area of medium-intensity timber harvests characteristic of proposed fuel treatments. Our results also suggested that the amount of edge between older forests and shrub/sapling vegetation and increased habitat heterogeneity may positively influence demographic rates of Spotted Owls. Finally, high-severity fire negatively influenced the probability of territory colonization. Despite correlations between owl demographic rates and several habitat variables, life stage simulation (sensitivity) analyses indicated that the amount of forest with high canopy cover was the primary driver of population growth and equilibrium occupancy at the scale of individual territories. Greater than 90% of medium-intensity harvests converted high-canopy-cover forests into lower-canopy-cover vegetation classes, suggesting that landscape-scale fuel treatments in such stands could have short-term negative impacts on populations of California Spotted Owls. Moreover, high-canopy-cover forests declined by an average of

  17. Fatal spirochetosis due to a relapsing fever-like Borrelia sp. in northern spotted owl

    Science.gov (United States)

    Thomas, N.J.; Bunikis, J.; Barbour, A.G.; Wolcott, M.J.

    2002-01-01

    Acute septicemic spirochetosis was diagnosed in an adult male northern spotted owl (Strix occidentalis caurina) found dead in Kittitas County, Washington, USA. Gross necropsy findings included marked enlargement of the liver and spleen and serofibrinous deposits on the serous membranes lining the body cavities and the pericardial and perihepatic sacs. Microscopic observations included macrophage infiltration in the liver and spleen with mild thrombosis and multifocal necrosis, as well as hemorrhage and acute inflammation in the choroid plexus of the brain. No viruses or pathogenic bacteria were isolated from brain, liver, or spleen, and no parasites were found in blood smears or impression smears of the liver. Chlamydial culture attempts were unsuccessful and no chlamydial antibodies were detected in serum. In silver-stained microscopic sections and by transmission electron microscopy of liver, numerous long, thin, spiral-shaped bacteria were seen in the liver, spleen, cerebral ventricles, and within blood vessels in many organs. The organism was identified as a member of the Borrelia genus by sequence analysis of the PCR-amplified 16S rRNA gene. The most closely related species is B. hermsii, an agent of relapsing fever in humans in the western United States. This is the first report of a relapsing fever-related Borrelia in a wild bird.

  18. Logistic quantile regression provides improved estimates for bounded avian counts: A case study of California Spotted Owl fledgling production

    Science.gov (United States)

    Cade, Brian S.; Noon, Barry R.; Scherer, Rick D.; Keane, John J.

    2017-01-01

    Counts of avian fledglings, nestlings, or clutch size that are bounded below by zero and above by some small integer form a discrete random variable distribution that is not approximated well by conventional parametric count distributions such as the Poisson or negative binomial. We developed a logistic quantile regression model to provide estimates of the empirical conditional distribution of a bounded discrete random variable. The logistic quantile regression model requires that counts are randomly jittered to a continuous random variable, logit transformed to bound them between specified lower and upper values, then estimated in conventional linear quantile regression, repeating the 3 steps and averaging estimates. Back-transformation to the original discrete scale relies on the fact that quantiles are equivariant to monotonic transformations. We demonstrate this statistical procedure by modeling 20 years of California Spotted Owl fledgling production (0−3 per territory) on the Lassen National Forest, California, USA, as related to climate, demographic, and landscape habitat characteristics at territories. Spotted Owl fledgling counts increased nonlinearly with decreasing precipitation in the early nesting period, in the winter prior to nesting, and in the prior growing season; with increasing minimum temperatures in the early nesting period; with adult compared to subadult parents; when there was no fledgling production in the prior year; and when percentage of the landscape surrounding nesting sites (202 ha) with trees ≥25 m height increased. Changes in production were primarily driven by changes in the proportion of territories with 2 or 3 fledglings. Average variances of the discrete cumulative distributions of the estimated fledgling counts indicated that temporal changes in climate and parent age class explained 18% of the annual variance in owl fledgling production, which was 34% of the total variance. Prior fledgling production explained as much of

  19. Meta-analysis of California Spotted Owl (Strix occidentalis occidentalis) territory occupancy in the Sierra Nevada: habitat associations and their implications for forest management

    Science.gov (United States)

    Douglas J. Tempel; John J. Keane; R. J. Gutierrez; Jared D. Wolfe; Gavin M. Jones; Alexander Koltunov; Carlos M. Ramirez; William J. Berigan; Claire V. Gallagher; Thomas E. Munton; Paula A. Shaklee; Sheila A. Whitmore; M. Zachariah Peery

    2016-01-01

    We assessed the occupancy dynamics of 275 California Spotted Owl (Strix occidentalis occidentalis) territories in 4 study areas in the Sierra Nevada, California, USA, from 1993 to 2011. We used Landsat data to develop maps of canopy cover for each study area, which we then used to quantify annual territory-specific habitat...

  20. Application of Bayesian methods to habitat selection modeling of the northern spotted owl in California: new statistical methods for wildlife research

    Science.gov (United States)

    Howard B. Stauffer; Cynthia J. Zabel; Jeffrey R. Dunk

    2005-01-01

    We compared a set of competing logistic regression habitat selection models for Northern Spotted Owls (Strix occidentalis caurina) in California. The habitat selection models were estimated, compared, evaluated, and tested using multiple sample datasets collected on federal forestlands in northern California. We used Bayesian methods in interpreting...

  1. Relative abundance of small mammals in nest core areas and burned wintering areas of Mexican spotted owls in the Sacramento Mountains, New Mexico

    Science.gov (United States)

    Joseph L. Ganey; Sean C. Kyle; Todd A. Rawlinson; Darrell L. Apprill; James P Ward

    2014-01-01

    Mexican Spotted Owls (Strix occidentalis lucida) are common in older forests within their range but also persist in many areas burned by wildfire and may selectively forage in these areas. One hypothesis explaining this pattern postulates that prey abundance increases in burned areas following wildfire. We observed movement to wintering areas within areas burned by...

  2. Effects of new export rules, a spotted owl plan, and recession on timber prices and shipments from the Douglas-fir region.

    Science.gov (United States)

    Donald F. Flora; Wendy J. McGInnls

    1992-01-01

    Several recently emplaced and potential Northwest timber policies are causing considerable market turbulence. Estimated were price and volume changes induced by three supply-side policies (a state-log export embargo, forest replanning, and spotted owl reservations) and the demand slide of 1990-91. Impacts were gauged separately and together by using a four-sector model...

  3. Preliminary risk assessment of the Mexican Spotted Owl under a spatially-weighted foraging regime at the Los Alamos National Laboratory

    Energy Technology Data Exchange (ETDEWEB)

    Gallegos, A.F.; Gonzales, G.J.; Bennett, K.D.; Pratt, L.E.

    1997-02-01

    The Record of Decision on the Dual Axis Radiographic Hydrodynamic Test Facility at the Los Alamos National Laboratory requires that the Department of Energy takes special precautions to protect the Mexican Spotted Owl (Strix occidentalis lucida). In order to do so, risk to the owl presented by radiological and nonradiological contaminants must be estimated. A preliminary risk assessment on the Mexican Spotted Owl in two Ecological Exposure Units (EEUs) was performed using a modified Environmental Protection Agency Quotient method, the FORTRAN model ECORSK4, and a geographic information system. Estimated doses to the owl under a spatially-weighted foraging regime were compared against toxicological reference doses generating hazard indices (HIs) and hazard quotients (HQs) for three risk source types. The average HI was 0.20 for EEU-21 and 0.0015 for EEU-40. Under the risk parameter assumptions made, hazard quotient results indicated no unacceptable risk to the owl, including a measure of cumulative effects from multiple contaminants that assumes a linear additive toxicity type. An HI of 1.0 was used as the evaluative criteria for determining the acceptability of risk. This value was exceeded (1.06) in only one of 200 simulated potential nest sites. Cesium-137, Ni, {sup 239}Pu, Al and {sup 234}U we`re among the constituents with the highest partial HQs. Improving model realism by weighting simulated owl foraging based on distance from potential nest sites decreased the estimated risk by 72% (0.5 HI units) for EEU-21 and by 97.6% (6.3E-02 HI units) for EEU-40. Information on risk by specific geographical location was generated, which can be used to manage contaminated areas, owl habitat, facility siting, and/or facility operations in order to maintain risk from contaminants at acceptably low levels.

  4. Preliminary risk assessment of the Mexican Spotted Owl under a spatially-weighted foraging regime at the Los Alamos National Laboratory

    International Nuclear Information System (INIS)

    Gallegos, A.F.; Gonzales, G.J.; Bennett, K.D.; Pratt, L.E.

    1997-02-01

    The Record of Decision on the Dual Axis Radiographic Hydrodynamic Test Facility at the Los Alamos National Laboratory requires that the Department of Energy takes special precautions to protect the Mexican Spotted Owl (Strix occidentalis lucida). In order to do so, risk to the owl presented by radiological and nonradiological contaminants must be estimated. A preliminary risk assessment on the Mexican Spotted Owl in two Ecological Exposure Units (EEUs) was performed using a modified Environmental Protection Agency Quotient method, the FORTRAN model ECORSK4, and a geographic information system. Estimated doses to the owl under a spatially-weighted foraging regime were compared against toxicological reference doses generating hazard indices (HIs) and hazard quotients (HQs) for three risk source types. The average HI was 0.20 for EEU-21 and 0.0015 for EEU-40. Under the risk parameter assumptions made, hazard quotient results indicated no unacceptable risk to the owl, including a measure of cumulative effects from multiple contaminants that assumes a linear additive toxicity type. An HI of 1.0 was used as the evaluative criteria for determining the acceptability of risk. This value was exceeded (1.06) in only one of 200 simulated potential nest sites. Cesium-137, Ni, 239 Pu, Al and 234 U we're among the constituents with the highest partial HQs. Improving model realism by weighting simulated owl foraging based on distance from potential nest sites decreased the estimated risk by 72% (0.5 HI units) for EEU-21 and by 97.6% (6.3E-02 HI units) for EEU-40. Information on risk by specific geographical location was generated, which can be used to manage contaminated areas, owl habitat, facility siting, and/or facility operations in order to maintain risk from contaminants at acceptably low levels

  5. Barred Owl [ds8

    Data.gov (United States)

    California Natural Resource Agency — These data define the current range of Barred and hybrid Barred/Spotted Owls in California. The current range includes the coastal mountains of northern California...

  6. Sexing young snowy owls

    Science.gov (United States)

    Seidensticker, M.T.; Holt, D.W.; Detienne, J.; Talbot, S.; Gray, K.

    2011-01-01

    We predicted sex of 140 Snowy Owl (Bubo scandiacus) nestlings out of 34 nests at our Barrow, Alaska, study area to develop a technique for sexing these owls in the field. We primarily sexed young, flightless owls (3844 d old) by quantifying plumage markings on the remiges and tail, predicting sex, and collecting blood samples to test our field predictions using molecular sexing techniques. We categorized and quantified three different plumage markings: two types of bars (defined as markings that touch the rachis) and spots (defined as markings that do not touch the rachis). We predicted sex in the field assuming that males had more spots than bars and females more bars than spots on the remiges and rectrices. Molecular data indicated that we correctly sexed 100% of the nestlings. We modeled the data using random forests and classification trees. Both models indicated that the number and type of markings on the secondary feathers were the most important in classifying nestling sex. The statistical models verified our initial qualitative prediction that males have more spots than bars and females more bars than spots on flight feathers P6P10 for both wings and tail feathers T1 and T2. This study provides researchers with an easily replicable and highly accurate method for sexing young Snowy Owls in the field, which should aid further studies of sex-ratios and sex-related variation in behavior and growth of this circumpolar owl species. ?? 2011 The Raptor Research Foundation, Inc.

  7. Sexual dimorphism of four owl species in South Africa | Ansara-Ross ...

    African Journals Online (AJOL)

    Owl Tyto capensis, Barn Owl T. alba, Marsh Owl Asio capensis and Spotted Eagle-Owl Bubo africanus) by examining specimens of intact owl carcasses found killed by vehicles along a national road in Gauteng province, South Africa. Females ...

  8. Simulating high spatial resolution high severity burned area in Sierra Nevada forests for California Spotted Owl habitat climate change risk assessment and management.

    Science.gov (United States)

    Keyser, A.; Westerling, A. L.; Jones, G.; Peery, M. Z.

    2017-12-01

    Sierra Nevada forests have experienced an increase in very large fires with significant areas of high burn severity, such as the Rim (2013) and King (2014) fires, that have impacted habitat of endangered species such as the California spotted owl. In order to support land manager forest management planning and risk assessment activities, we used historical wildfire histories from the Monitoring Trends in Burn Severity project and gridded hydroclimate and land surface characteristics data to develope statistical models to simulate the frequency, location and extent of high severity burned area in Sierra Nevada forest wildfires as functions of climate and land surface characteristics. We define high severity here as BA90 area: the area comprising patches with ninety percent or more basal area killed within a larger fire. We developed a system of statistical models to characterize the probability of large fire occurrence, the probability of significant BA90 area present given a large fire, and the total extent of BA90 area in a fire on a 1/16 degree lat/lon grid over the Sierra Nevada. Repeated draws from binomial and generalized pareto distributions using these probabilities generated a library of simulated histories of high severity fire for a range of near (50 yr) future climate and fuels management scenarios. Fuels management scenarios were provided by USFS Region 5. Simulated BA90 area was then downscaled to 30 m resolution using a statistical model we developed using Random Forest techniques to estimate the probability of adjacent 30m pixels burning with ninety percent basal kill as a function of fire size and vegetation and topographic features. The result is a library of simulated high resolution maps of BA90 burned areas for a range of climate and fuels management scenarios with which we estimated conditional probabilities of owl nesting sites being impacted by high severity wildfire.

  9. The evolution of mapping habitat for northern spotted owls (Strix occidentalis caurina): A comparison of photo-interpreted, Landsat-based, and lidar-based habitat maps

    Science.gov (United States)

    Ackers, Steven H.; Davis, Raymond J.; Olsen, K.; Dugger, Catherine

    2015-01-01

    Wildlife habitat mapping has evolved at a rapid pace over the last few decades. Beginning with simple, often subjective, hand-drawn maps, habitat mapping now involves complex species distribution models (SDMs) using mapped predictor variables derived from remotely sensed data. For species that inhabit large geographic areas, remote sensing technology is often essential for producing range wide maps. Habitat monitoring for northern spotted owls (Strix occidentalis caurina), whose geographic covers about 23 million ha, is based on SDMs that use Landsat Thematic Mapper imagery to create forest vegetation data layers using gradient nearest neighbor (GNN) methods. Vegetation data layers derived from GNN are modeled relationships between forest inventory plot data, climate and topographic data, and the spectral signatures acquired by the satellite. When used as predictor variables for SDMs, there is some transference of the GNN modeling error to the final habitat map.Recent increases in the use of light detection and ranging (lidar) data, coupled with the need to produce spatially accurate and detailed forest vegetation maps have spurred interest in its use for SDMs and habitat mapping. Instead of modeling predictor variables from remotely sensed spectral data, lidar provides direct measurements of vegetation height for use in SDMs. We expect a SDM habitat map produced from directly measured predictor variables to be more accurate than one produced from modeled predictors.We used maximum entropy (Maxent) SDM modeling software to compare predictive performance and estimates of habitat area between Landsat-based and lidar-based northern spotted owl SDMs and habitat maps. We explored the differences and similarities between these maps, and to a pre-existing aerial photo-interpreted habitat map produced by local wildlife biologists. The lidar-based map had the highest predictive performance based on 10 bootstrapped replicate models (AUC = 0.809 ± 0.011), but the

  10. Outrageous Owls

    Science.gov (United States)

    Walkup, Nancy

    2007-01-01

    The author's encounter with a live owl and her purchase of a Peruvian folk art gourd inspired a new interdisciplinary experience for the author's fourth grade students. In this article, she describes how her students explored owls through clay sculpture. (Contains 2 resources and 1 online resource.)

  11. 77 FR 14036 - Draft Environmental Impact Statement for Experimental Removal of Barred Owls to Benefit...

    Science.gov (United States)

    2012-03-08

    ... whether to move forward with future management of barred owls. The action alternatives vary by the number... now outnumber spotted owls in many portions of the northern spotted owl's range (Pearson and Livezey..., p. 51; Pearson and Livezey 2003, p. 274; Courtney et al., pp. 7-27 through 7-31; Gremel 2005, pp. 9...

  12. Modeling interactions betweenspotted owl and barred owl populations in fire-prone forests

    Science.gov (United States)

    Background / Question / Methods Efforts to conserve northern spotted owls (Strix occidentalis caurina) in the eastern Cascades of Washington must merge the challenges of providing sufficient structurally complex forest habitat in a fire-prone landscape with the limitations impos...

  13. Potential trophic cascades triggered by the barred owl range expansion

    Science.gov (United States)

    Holm, Samantha R.; Noon, Barry R.; Wiens, David; Ripple, William J.

    2016-01-01

    Recently, the barred owl (Strix varia) has expanded its range into the Pacific Northwest of the United States resulting in pronounced effects on the demography and behavior of the northern spotted owl (S. occidentalis caurina). The range expansion has brought together historically allopatric species, creating the potential for significant changes in the avian predator community with possible cascading effects on food-web dynamics. The adverse effects of the barred owl on the behavior and demography of the northern spotted owl are well-documented, but little is known about the immediate and long-term effects changes in the predator community may have on native species composition and ecosystem processes. Based on northern spotted owl and barred owl selection for diet and habitat resources, there is a potential for trophic cascades within the region's predator and prey communities, differing responses by their shared and unique prey species, and possible direct and indirect effects on ecosystem processes. We explored the possible ecological consequences of the barred owl range expansion to wildlife communities of the Pacific Northwest based on the theoretical underpinnings of predator–prey relationships, interspecific competition, intraguild predation, and potential cascading trophic interactions. Negative effects on fitness of northern spotted owls because of interspecific competition with barred owls are strong selection forces that may contribute to the regional extinction of the northern spotted owl. In addition, we posit that shared prey species and those uniquely consumed by barred owls, along with other competing native predators, may experience changes in behavior, abundance, and distribution as a result of increased rates of predation by rapidly expanding populations of barred owls.

  14. Chapter 2: A historical perspective on the population decline of the cactus ferruginous pygmy-owl in Arizona

    Science.gov (United States)

    R. Roy Johnson; Jean-Luc E. Cartron; Lois T. Haight; Russell B. Duncan; Kenneth J. Kingsley

    2000-01-01

    The cactus ferruginous pygmy-owl (Glaucidium brasilianum cactorum) was discovered in the U.S. by Bendire in 1872 in the Tucson area (Coues 1872). During the next five decades, naturalists collected many specimens of this owl and typically described the subspecies as common or fairly common along some streams and rivers of central and southern Arizona...

  15. Implementing OWL Defaults

    National Research Council Canada - National Science Library

    Kolovski, Vladimir; Parsia, Bijan; Katz, Yarden

    2006-01-01

    ...) have often requested some form of non-monotonic reasoning. In this paper, we present preliminary optimizations and an implementation of a restricted version of Reiter's default logic as an extension to the description logic fragment of OWL, OWL DL...

  16. Model Problems in Technologies for Interoperability: OWL Web Ontology Language for Services (OWL-S)

    National Research Council Canada - National Science Library

    Metcalf, Chris; Lewis, Grace A

    2006-01-01

    .... The OWL Web Ontology Language for Services (OWL-S) is a language to describe the properties and capabilities of Web Services in such a way that the descriptions can be interpreted by a computer system in an automated manner. This technical note presents the results of applying the model problem approach to examine the feasibility of using OWL-S to allow applications to automatically discover, compose, and invoke services in a dynamic services-oriented environment.

  17. Shedding subspecies: The influence of genetics on reptile subspecies taxonomy.

    Science.gov (United States)

    Torstrom, Shannon M; Pangle, Kevin L; Swanson, Bradley J

    2014-07-01

    The subspecies concept influences multiple aspects of biology and management. The 'molecular revolution' altered traditional methods (morphological traits) of subspecies classification by applying genetic analyses resulting in alternative or contradictory classifications. We evaluated recent reptile literature for bias in the recommendations regarding subspecies status when genetic data were included. Reviewing characteristics of the study, genetic variables, genetic distance values and noting the species concepts, we found that subspecies were more likely elevated to species when using genetic analysis. However, there was no predictive relationship between variables used and taxonomic recommendation. There was a significant difference between the median genetic distance values when researchers elevated or collapsed a subspecies. Our review found nine different concepts of species used when recommending taxonomic change, and studies incorporating multiple species concepts were more likely to recommend a taxonomic change. Since using genetic techniques significantly alter reptile taxonomy there is a need to establish a standard method to determine the species-subspecies boundary in order to effectively use the subspecies classification for research and conservation purposes. Copyright © 2014 Elsevier Inc. All rights reserved.

  18. ER2OWL: Generating OWL Ontology from ER Diagram

    Science.gov (United States)

    Fahad, Muhammad

    Ontology is the fundamental part of Semantic Web. The goal of W3C is to bring the web into (its full potential) a semantic web with reusing previous systems and artifacts. Most legacy systems have been documented in structural analysis and structured design (SASD), especially in simple or Extended ER Diagram (ERD). Such systems need up-gradation to become the part of semantic web. In this paper, we present ERD to OWL-DL ontology transformation rules at concrete level. These rules facilitate an easy and understandable transformation from ERD to OWL. The set of rules for transformation is tested on a structured analysis and design example. The framework provides OWL ontology for semantic web fundamental. This framework helps software engineers in upgrading the structured analysis and design artifact ERD, to components of semantic web. Moreover our transformation tool, ER2OWL, reduces the cost and time for building OWL ontologies with the reuse of existing entity relationship models.

  19. Burrowing Owls, Pulex irritans, and Plague.

    Science.gov (United States)

    Belthoff, James R; Bernhardt, Scott A; Ball, Christopher L; Gregg, Michael; Johnson, David H; Ketterling, Rachel; Price, Emily; Tinker, Juliette K

    2015-09-01

    Western Burrowing Owls (Athene cunicularia hypugaea) are small, ground-dwelling owls of western North America that frequent prairie dog (Cynomys spp.) towns and other grasslands. Because they rely on rodent prey and occupy burrows once or concurrently inhabited by fossorial mammals, the owls often harbor fleas. We examined the potential role of fleas found on burrowing owls in plague dynamics by evaluating prevalence of Yersinia pestis in fleas collected from burrowing owls and in owl blood. During 2012-2013, fleas and blood were collected from burrowing owls in portions of five states with endemic plague-Idaho, Oregon, Washington, Colorado, and South Dakota. Fleas were enumerated, taxonomically identified, pooled by nest, and assayed for Y. pestis using culturing and molecular (PCR) approaches. Owl blood underwent serological analysis for plague antibodies and nested PCR for detection of Y. pestis. Of more than 4750 fleas collected from owls, Pulex irritans, a known plague vector in portions of its range, comprised more than 99.4%. However, diagnostic tests for Y. pestis of flea pools (culturing and PCR) and owl blood (PCR and serology) were negative. Thus, even though fleas were prevalent on burrowing owls and the potential for a relationship with burrowing owls as a phoretic host of infected fleas exists, we found no evidence of Y. pestis in sampled fleas or in owls that harbored them. We suggest that studies similar to those reported here during plague epizootics will be especially useful for confirming these results.

  20. Albinism in the Great Gray Owl (Strix nebulosa) and other owls

    Science.gov (United States)

    Pentti Alaja; Heimo Mikkola

    1997-01-01

    An incomplete albino Great Gray Owl (Strix nebulosa) was observed in Vesanto and Kajaani, Finland, 1994-1995. The literature pertaining to albinism in owls indicates that total and incomplete albinism has only been reported in 13 different owl species, the Great Gray Owl being the only species with more than five records. Thus six to seven incomplete...

  1. On a new Owl from Liberia

    NARCIS (Netherlands)

    Büttikofer, J.

    1889-01-01

    Amongst the last birds received from Mr. Stampfli, there was a very peculiar new Owl, which I propose to name Bubo lettii, after its discoverer Mr. Lett, our former landlord and huntsman at Schieffelinsville. This Owl shows no affinity to any of the Owls at present known from the old world, but

  2. Chapter 17. Information needs: Great gray owls

    Science.gov (United States)

    Gregory D. Hayward

    1994-01-01

    Current understanding of great gray owl biology and ecology is based on studies of less than five populations. In an ideal world, a strong conservation strategy would require significant new information. However, current knowledge suggests that conservation of this forest owl should involve fewer conflicts than either the boreal or flammulated owl. The mix of forest...

  3. The Ecology of the Ural Owl at South-Western Border of Its Distribution (Slovenia

    Directory of Open Access Journals (Sweden)

    Al Vrezec

    2016-04-01

    Full Text Available In Slovenia the Ural Owl (Strix uralensis is on its south-western limit of distribution and belongs to the southern subspecies Strix uralensis macroura. Dark coloured owls are characteristic for this subspecies and represent between 5 to 15% of the population. Slovenian breeding population size is estimated at 400 to 700 pairs. The densities of territories ranges between 0.9 to 13.4 territories per 10 km2, and the highest are reached in mountain forests of southern Dinaric region. In the forests with dominant deciduous trees, e.g. Beech (Fagus sylvatica and Pedinculate Oak (Quercus robur, the breeding densities are significantly higher than in the forests with higher proportion of coniferous trees, e.g. Norway Spruce (Picea abies. The species does not select specific altitude and throughout Slovenia it occurs between 150 and 1600 m a.s.l.  The most of the nest found at natural nest-sites were in tree holes or semi-holes (56% and at the tree stumps (20%. Nest boxes were occupied less frequently in Slovenia with occupancy rate of 29%. At least in mountain regions breeding begins quite late, between 15 March to 21 June. Average clutch size is 3.3 ± 1.0 eggs per nest. About 80% of all nests are successful raising at least one young. The diet shifts significantly between breeding and non-breeding period due to the seasonality in prey availability. According to the biomass the most important prey in breeding period are mice (Muridae, voles (Arvicollidae and mole (Talpa europaea, but in the non-breeding period voles and dormice (Gliridae predominate. Large Fat Dormouse (Glis glis seems to have very important role in the post-breeding period, but not in the breeding period due to its dormancy. As a large forest-dwelling predator the Ural Owl shapes the raptor community in the forest by excluding mezopredator species, as Tawny Owl (Strix aluco, what allows smaller raptors, e.g. Boreal Owl (Aegolius funereus to expend their ranges to lower elevations

  4. Experiences with Aber-OWL, an Ontology Repository with OWL EL Reasoning

    KAUST Repository

    Slater, Luke; Rodriguez-Garcia, Miguel Angel; O’ Shea, Keiron; Schofield, Paul N.; Gkoutos, Georgios V.; Hoehndorf, Robert

    2016-01-01

    expressed in the Web Ontology Language (OWL). Computational access to the knowledge contained within them relies on the use of automated reasoning. We have developed Aber-OWL, an ontology repository that provides OWL EL reasoning to answer queries and verify

  5. Liver spots

    Science.gov (United States)

    ... skin changes - liver spots; Senile or solar lentigines; Skin spots - aging; Age spots ... Liver spots are changes in skin color that occur in older skin. The coloring may be due to aging, exposure to the sun ...

  6. Secondary poisoning of owls by anticoagulant rodenticides

    Science.gov (United States)

    Mendenhall, Vivian M.; Pank, L.F.

    1980-01-01

    Anticoagulants-compounds that prevent clotting of the blood-are extensively used for control of small mammal pests. The potential secondary hazards of 6 anticoagulant rodenticides to birds of prey were examined in this study. Whole rats or mice were killed with each anticoagulant and were fed to 1-3 species of owls. Owls died of hemorrhaging after feeding on rats killed with bromadiolone, brodifacoum, or diphacinone; sublethal hemorrhaging occurred in owls fed rats killed with difenacoum. These results demonstrate potential secondary hazards of 4 anticoagulants to avian predators. No abnormalities were observed in owls fed rats killed with fumarin and chlorophacinone

  7. Experiences with Aber-OWL, an Ontology Repository with OWL EL Reasoning

    KAUST Repository

    Slater, Luke

    2016-04-19

    Ontologies are widely used in biology and biomedicine for the annotation and integration of data, and hundreds of ontologies have been developed for this purpose. These ontologies also constitute large volumes of formalized domain knowledge, usually expressed in the Web Ontology Language (OWL). Computational access to the knowledge contained within them relies on the use of automated reasoning. We have developed Aber-OWL, an ontology repository that provides OWL EL reasoning to answer queries and verify the consistency of ontologies. Aber-OWL also provides a set of web services which provide ontology-based access to scientific literature in Pubmed and Pubmed Central, SPARQL query expansion to retrieve linked data, and integration with Bio2RDF. Here, we report on our experiences with Aber-OWL and outline a roadmap for future development. Aber-OWL is freely available at http://aber-owl.net.

  8. Chapter 3. Current management situation: Flammulated owls

    Science.gov (United States)

    Jon Verner

    1994-01-01

    The flammulated owl (Otus flammeolus) is a western mountain species associated mainly with ponderosa (Pinus ponderosa) and Jeffrey pine (Pinus jefferyi) forests in the United States and Canada (see Chapter 4). As a neotropical migrant, this small forest owl occurs on national forests in the United States during...

  9. Chapter 8. Current management situation: Boreal owls

    Science.gov (United States)

    Jon Verner

    1994-01-01

    The range of boreal owls (Aegolius funereus) in the United States includes Alaska, the mountains of the western United States, and the northern tier states from the Atlantic to Pacific (see Chapter 9). Based on the species' documented distribution (see National Geographic Society 1987, Hayward et al. 1987, Johnsgard 1988, and others) the owl may...

  10. OWL references in ORM conceptual modelling

    Science.gov (United States)

    Matula, Jiri; Belunek, Roman; Hunka, Frantisek

    2017-07-01

    Object Role Modelling methodology is the fact-based type of conceptual modelling. The aim of the paper is to emphasize a close connection to OWL documents and its possible mutual cooperation. The definition of entities or domain values is an indispensable part of the conceptual schema design procedure defined by the ORM methodology. Many of these entities are already defined in OWL documents. Therefore, it is not necessary to declare entities again, whereas it is possible to utilize references from OWL documents during modelling of information systems.

  11. Burrowing Owl - Palo Verde Valley [ds197

    Data.gov (United States)

    California Natural Resource Agency — These burrowing owl observations were collected during the spring and early summer of 1976 in the Palo Verde Valley, eastern Riverside County, California. This is an...

  12. Paraconsistent Reasoning for OWL 2

    Science.gov (United States)

    Ma, Yue; Hitzler, Pascal

    A four-valued description logic has been proposed to reason with description logic based inconsistent knowledge bases. This approach has a distinct advantage that it can be implemented by invoking classical reasoners to keep the same complexity as under the classical semantics. However, this approach has so far only been studied for the basic description logic mathcal{ALC}. In this paper, we further study how to extend the four-valued semantics to the more expressive description logic mathcal{SROIQ} which underlies the forthcoming revision of the Web Ontology Language, OWL 2, and also investigate how it fares when adapted to tractable description logics including mathcal{EL++}, DL-Lite, and Horn-DLs. We define the four-valued semantics along the same lines as for mathcal{ALC} and show that we can retain most of the desired properties.

  13. The impact of subspecialization on postgraduate medical education in neurosurgery.

    Science.gov (United States)

    Toyota, Brian D

    2005-11-01

    Medical subspecialization is a response to rapidly expanding technology and knowledge. Although beneficial to patient care, it poses a challenge to the current infrastructure of resident education. This article analyzes the advent of subspecialization, the current template of postgraduate neurosurgical education, the impact of subspecialization on postgraduate neurosurgical education, and, finally, suggests strategies to optimize professional education in the face of an increasingly subspecialized field.

  14. Comparative food niche analysis of Strix Owls in Belarus

    Science.gov (United States)

    Alexey K. Tishechkin

    1997-01-01

    Three Strix species breed sympatrically in Belarus. The Tawny Owl (Strix aluco) is one of two commonest owl species in the country, and is distributed throughout the whole territory. Its' range overlaps widely with two other species, the Ural Owl (S. uralensis) which is common in the forests of the northern part and the Great...

  15. Moonlight Makes Owls More Chatty

    Science.gov (United States)

    Penteriani, Vincenzo; Delgado, María del Mar; Campioni, Letizia; Lourenço, Rui

    2010-01-01

    Background Lunar cycles seem to affect many of the rhythms, temporal patterns and behaviors of living things on Earth. Ambient light is known to affect visual communication in animals, with the conspicuousness of visual signals being largely determined by the light available for reflection by the sender. Although most previous studies in this context have focused on diurnal light, moonlight should not be neglected from the perspective of visual communication among nocturnal species. We recently discovered that eagle owls Bubo bubo communicate with conspecifics using a patch of white throat plumage that is repeatedly exposed during each call and is only visible during vocal displays. Methodology/Principal Findings Here we provide evidence that this species uses moonlight to increase the conspicuousness of this visual signal during call displays. We found that call displays are directly influenced by the amount of moonlight, with silent nights being more frequent during periods with no-moonlight than moonlight. Furthermore, high numbers of calling bouts were more frequent at moonlight. Finally, call posts were located on higher positions on moonlit nights. Conclusions/Significance Our results support the idea that moon phase affects the visual signaling behavior of this species, and provide a starting point for examination of this method of communication by nocturnal species. PMID:20098700

  16. Moonlight makes owls more chatty.

    Directory of Open Access Journals (Sweden)

    Vincenzo Penteriani

    2010-01-01

    Full Text Available Lunar cycles seem to affect many of the rhythms, temporal patterns and behaviors of living things on Earth. Ambient light is known to affect visual communication in animals, with the conspicuousness of visual signals being largely determined by the light available for reflection by the sender. Although most previous studies in this context have focused on diurnal light, moonlight should not be neglected from the perspective of visual communication among nocturnal species. We recently discovered that eagle owls Bubo bubo communicate with conspecifics using a patch of white throat plumage that is repeatedly exposed during each call and is only visible during vocal displays.Here we provide evidence that this species uses moonlight to increase the conspicuousness of this visual signal during call displays. We found that call displays are directly influenced by the amount of moonlight, with silent nights being more frequent during periods with no-moonlight than moonlight. Furthermore, high numbers of calling bouts were more frequent at moonlight. Finally, call posts were located on higher positions on moonlit nights.Our results support the idea that moon phase affects the visual signaling behavior of this species, and provide a starting point for examination of this method of communication by nocturnal species.

  17. F-OWL: An Inference Engine for Semantic Web

    Science.gov (United States)

    Zou, Youyong; Finin, Tim; Chen, Harry

    2004-01-01

    Understanding and using the data and knowledge encoded in semantic web documents requires an inference engine. F-OWL is an inference engine for the semantic web language OWL language based on F-logic, an approach to defining frame-based systems in logic. F-OWL is implemented using XSB and Flora-2 and takes full advantage of their features. We describe how F-OWL computes ontology entailment and compare it with other description logic based approaches. We also describe TAGA, a trading agent environment that we have used as a test bed for F-OWL and to explore how multiagent systems can use semantic web concepts and technology.

  18. Phylogenetic systematics of Barn Owl (Tyto alba (Scopoli, 1769 complex inferred from mitochondrial rDNA (16S rRNA taxonomic implication

    Directory of Open Access Journals (Sweden)

    Mansour Aliabadian

    2012-09-01

    Full Text Available The Barn owl, Tyto alba (Scopoli, 1769, occurs worldwide and shows a considerable amount of morphological and geographical variations, leading to the recognition of many subspecies throughout the world. Yet, no comprehensive study has not been done on this species. Data from mitochondrial gene (16S Ribosomal RNA (16S with 569 bp length were analyzed for 41 individuals around the world. Maximum likelihood (ML, maximum parsimony (MP and Bayesian analysis showed two distinct clades including alba clad (old world and furcata clad (new world. The amount of genetic variation within each of these clades ranged from 0.5-1.7 but variation between clades was 3.7. This data may suggest that Barn owls of the Old World may be a separate species from those of the New World.

  19. Bier spots

    OpenAIRE

    Ahu Yorulmaz,; Seray Kulcu Cakmak; Esra Ar?; Ferda Artuz

    2015-01-01

    Also called as physiologic anemic macules, Bier spots are small, hypopigmented irregularly shaped macules against a background of diffuse erythema, which creates an appearance of speckled vascular mottling of the skin. Bier spots most commonly appear on distal portions of the limbs though there are case reports describing diffuse involvement, which also affect trunk and mucous membranes of the patient. Although the exact pathophysiological mechanisms underlying Bier spots still need to be elu...

  20. Extraocular muscle architecture in hawks and owls.

    Science.gov (United States)

    Plochocki, Jeffrey H; Segev, Tamar; Grow, Wade; Hall, Margaret I

    2018-02-06

    A complete and accurate understanding of extraocular muscle function is important to the veterinary care of the avian eye. This is especially true for birds of prey, which rely heavily on vision for survival and yet are prone to ocular injury and disease. To better understand the function of extraocular muscles in birds of prey, we studied extraocular muscle architecture grossly and histologically. This sample was composed of two each of the following species: red-tailed hawk (Buteo jamaicensis), Harris's hawk (Parabuteo unicinctus), great horned owl (Bubo virginianus), and barn owl (Tyto alba). All extraocular muscles were dissected and weighed. To analyze muscle fiber architecture, the superior oblique and quadratus muscles were dissected, weighed, and sectioned at 5 μm thickness in the transverse plane. We calculated the physiologic cross-sectional area and the ratio of muscle mass to predicted effective maximum tetanic tension. Hawk and owl extraocular muscles exhibit significant physiological differences that play roles in ocular movements and closure of the nictitating membrane. Owls, which do not exhibit extraocular movement, have muscle architecture suited to stabilize the position of a massive, tubular eye that protrudes significantly from the orbit. Hawks, which have a more globose eye that is largely contained within the orbit, do not require as much muscular stability and instead have muscle architecture that facilitates rapid eye movement. © 2018 American College of Veterinary Ophthalmologists.

  1. Owl's eye appearance: a case report

    International Nuclear Information System (INIS)

    Mathur, Mukul; Asha, P.

    2010-01-01

    Full text: Hyper-functioning thyroid nodule may present various scintigraphic appearances on thyroid scans. Autonomously hyper functioning thyroid nodules often show degenerative changes. These changes may give rise to peripheral photopenic areas on a thyroid scan. In this report we present a case of hyper functioning nodule showing appearance of an owl's eye. Although rare, such pattern can be seen in a variety of benign and malignant thyroid conditions. A 42-year-old man presented with a solitary thyroid nodule in the right lobe and weight loss for four months. The thyroid hormone profile confirmed hyperthyroidism. Thyroid function testing revealed T4=136.8 nmol/l (Normal = 66.0-181.0 nmol/L) and Thyroid Stimulating Hormone (TSH) = 0.283 (Normal =0.27- 4.2 μIU/ml). Antithyroglobulin antibodies and antimicrosmal antibodies were negative. The patient was referred for thyroid scan and uptake. A Thyroid scan was obtained after the intravenous injection of 5 mCi (185MBq) of 99m Tc pertechnetate. Anterior view obtained using a parallel hole collimator. The scan showed peripheral photopenic area with a central focal area of increased uptake giving the appearance of 'Owl's eye'. 99m Tc-pertechnetate uptake was increased. A scintigraphic 'Owl's eye' sign has been described in thyroid cyst, benign autonomous nodule and papillary carcinoma of the thyroid gland. This Owl's eye pattern appears to be caused by a focus of functioning tissue overlapping a large cold area in a nodule that has cystic,degenerative and necrotic changes in the middle of a benign and malignant pathology. Hyper functioning nodules may scintigraphically show Owl's eye pattern due to intra nodular degeneration, with residual hyper functioning tissue within or overlapping the degenerative area

  2. Comparison of the Diet of Two Desert-living Owls, the Long-eared Owl ( Asio otus and Little Owl ( Athene noctua from Southern Mongolia

    Directory of Open Access Journals (Sweden)

    Dawn M. Scott

    2005-06-01

    Full Text Available The diet of two sympatric owl species, the long-eared owl ( Asio otus and the little owl ( Athene noctua was investigated in an arid area of southern Mongolia using pellet analysis. In total 334 pellets of long-eared owl and 52 pellets of little owl were analysed, revealing the presence of five small mammal species (Dipodidae, three Muridae and one Soricidae, small birds and invertebrate fragments. Accumulative composition plots indicated a batch size of 35 - 60 pellets was sufficient to reveal representative diet composition. Small mammals comprised the largest component of the diet of long- eared owls with four species recorded, Phodopus was the most frequently occurring (85 %, followed by Meriones (33 %. Bird and invertebrate remains were also found in long-eared owl pellets but comprised less than 2 %. In contrast, invertebrates were the highest occurring component of the diet of little owls (35 %, with small mammals occurring in only 40 % of pellets. Meriones was the most frequently recorded small mammal in little owl pellets (23 % and contributed the greatest in terms of overall rodent biomass. There was a highly statistically significant difference in the diet of the two species (÷ 2 = 2043, d.f. = 4, P < 0.001. Levin’s measure of niche breadth was greater for little owls (0.71 than long-eared owls (0.51, but overall the two species had low niche overlap using Levin’s index (0.22. These results are discussed in relation to previous findings of these two species.

  3. Bier spots

    Directory of Open Access Journals (Sweden)

    Ahu Yorulmaz,

    2015-10-01

    Full Text Available Also called as physiologic anemic macules, Bier spots are small, hypopigmented irregularly shaped macules against a background of diffuse erythema, which creates an appearance of speckled vascular mottling of the skin. Bier spots most commonly appear on distal portions of the limbs though there are case reports describing diffuse involvement, which also affect trunk and mucous membranes of the patient. Although the exact pathophysiological mechanisms underlying Bier spots still need to be elucidated, Bier spots have been suggested to be a vascular anomaly caused by vasoconstriction of small vessels. In addition, several diseases have been proposed to be associated with Bier spots, including scleroderma renal crisis, cryoglobulinemia, Peutz-Jeghers syndrome, alopecia areata and hypoplasia of the aorta, although it has not been shown whether these associations are casual or coincidental. The clinical presentation of Bier spots is quite typical. These tiny whitish macules easily become prominent when the affected limb is placed in a dependent position and fade away when the limb is raised. Here we report a case of Bier spots in a 32-year-old male patient with characteristical clinical manifestations.

  4. Comparison of Food Habits of the Northern Saw-whet Owl (Aegolius acadicus) and the Western Screech-owl (Otus kennicottii) in Southwestern Idaho

    Science.gov (United States)

    Charlotte Rains

    1997-01-01

    I compared the breeding-season diets of Northern Saw-whet Owls (Aegolius acadicus) and Western Screech-owls (Otus kennicottii). Prey items were obtained from regurgitated pellets collected from saw-whet owl and screech-owl nests found in nest boxes in the Snake River Birds of Prey National Conservation Area in southwestern Idaho....

  5. Age Spots

    Science.gov (United States)

    ... for Every Season How to Choose the Best Skin Care Products In This Section Dermatologic Surgery What is dermatologic ... for Every Season How to Choose the Best Skin Care Products Age Spots Treatment Options Learn more about treatment ...

  6. Spotted inflation

    International Nuclear Information System (INIS)

    Matsuda, Tomohiro

    2010-01-01

    We describe new scenarios for generating curvature perturbations when inflaton (curvaton) has significant interactions. We consider a ''spot'', which arises from interactions associated with an enhanced symmetric point (ESP) on the trajectory. Our first example uses the spot to induce a gap in the field equation. We observe that the gap in the field equation may cause generation of curvature perturbation if it does not appear simultaneous in space. The mechanism is similar to the scenario of inhomogeneous phase transition. Then we observe that the spot interactions may initiate warm inflation in the cold Universe. Creation of cosmological perturbation is discussed in relation to the inflaton dynamics and the modulation associated with the spot interactions

  7. Does petroleum development affect burrowing owl nocturnal space-use?

    Energy Technology Data Exchange (ETDEWEB)

    Scobie, Corey; Wellicome, Troy; Bayne, Erin [Department of Biological Sciences, University of Alberta (Canada)], email: cscobie@ualberta.ca, email: tiw@ualberta.ca, email: bayne@ualberta.ca

    2011-07-01

    Decline all over Canada in the population of burrowing owls, a federally listed endangered species, has raised concerns about the possible influence of petroleum infrastructure development on owl nocturnal space-use while foraging. Roads, wells, pipelines and sound-producing facilities related to petroleum development change the landscape and can influence the owls' mortality risk. For 3 years, 27 breeding adult male burrowing owls with nests close to different petroleum infrastructures were captured and fitted with a miniature GPS datalogger in order to track their nocturnal foraging. Data from these GPS devices were fed into a geographical information system and showed that pipelines and wells did not alter the foraging habits of the owls. Dirt and gravel roads, with little traffic, were preferentially selected by the owls, conceivably because of higher owl mortality risk along paved roads. Sound-producing facilities did not change owls' foraging behaviour, implying that sound may not affect their nocturnal space-use. Traffic data and sound power measurements will be used in further studies in an effort to better understand burrowing owls' nocturnal foraging habits.

  8. Inferring ontology graph structures using OWL reasoning

    KAUST Repository

    Rodriguez-Garcia, Miguel Angel

    2018-01-05

    Ontologies are representations of a conceptualization of a domain. Traditionally, ontologies in biology were represented as directed acyclic graphs (DAG) which represent the backbone taxonomy and additional relations between classes. These graphs are widely exploited for data analysis in the form of ontology enrichment or computation of semantic similarity. More recently, ontologies are developed in a formal language such as the Web Ontology Language (OWL) and consist of a set of axioms through which classes are defined or constrained. While the taxonomy of an ontology can be inferred directly from the axioms of an ontology as one of the standard OWL reasoning tasks, creating general graph structures from OWL ontologies that exploit the ontologies\\' semantic content remains a challenge.We developed a method to transform ontologies into graphs using an automated reasoner while taking into account all relations between classes. Searching for (existential) patterns in the deductive closure of ontologies, we can identify relations between classes that are implied but not asserted and generate graph structures that encode for a large part of the ontologies\\' semantic content. We demonstrate the advantages of our method by applying it to inference of protein-protein interactions through semantic similarity over the Gene Ontology and demonstrate that performance is increased when graph structures are inferred using deductive inference according to our method. Our software and experiment results are available at http://github.com/bio-ontology-research-group/Onto2Graph .Onto2Graph is a method to generate graph structures from OWL ontologies using automated reasoning. The resulting graphs can be used for improved ontology visualization and ontology-based data analysis.

  9. Inferring ontology graph structures using OWL reasoning.

    Science.gov (United States)

    Rodríguez-García, Miguel Ángel; Hoehndorf, Robert

    2018-01-05

    Ontologies are representations of a conceptualization of a domain. Traditionally, ontologies in biology were represented as directed acyclic graphs (DAG) which represent the backbone taxonomy and additional relations between classes. These graphs are widely exploited for data analysis in the form of ontology enrichment or computation of semantic similarity. More recently, ontologies are developed in a formal language such as the Web Ontology Language (OWL) and consist of a set of axioms through which classes are defined or constrained. While the taxonomy of an ontology can be inferred directly from the axioms of an ontology as one of the standard OWL reasoning tasks, creating general graph structures from OWL ontologies that exploit the ontologies' semantic content remains a challenge. We developed a method to transform ontologies into graphs using an automated reasoner while taking into account all relations between classes. Searching for (existential) patterns in the deductive closure of ontologies, we can identify relations between classes that are implied but not asserted and generate graph structures that encode for a large part of the ontologies' semantic content. We demonstrate the advantages of our method by applying it to inference of protein-protein interactions through semantic similarity over the Gene Ontology and demonstrate that performance is increased when graph structures are inferred using deductive inference according to our method. Our software and experiment results are available at http://github.com/bio-ontology-research-group/Onto2Graph . Onto2Graph is a method to generate graph structures from OWL ontologies using automated reasoning. The resulting graphs can be used for improved ontology visualization and ontology-based data analysis.

  10. Geographical assemblages of European raptors and owls

    Science.gov (United States)

    López-López, Pascual; Benavent-Corai, José; García-Ripollés, Clara

    2008-09-01

    In this work we look for geographical structure patterns in European raptors (Order: Falconiformes) and owls (Order: Strigiformes). For this purpose we have conducted our research using freely available tools such as statistical software and databases. To perform the study, presence-absence data for the European raptors and owl species (Class Aves) were downloaded from the BirdLife International website. Using the freely available "pvclust" R-package, we applied similarity Jaccard index and cluster analysis in order to delineate biogeographical relationships for European countries. According to the cluster of similarity, we found that Europe is structured into two main geographical assemblages. The larger length branch separated two main groups: one containing Iceland, Greenland and the countries of central, northern and northwestern Europe, and the other group including the countries of eastern, southern and southwestern Europe. Both groups are divided into two main subgroups. According to our results, the European raptors and owls could be considered structured into four meta-communities well delimited by suture zones defined by Remington (1968) [Remington, C.L., 1968. Suture-zones of hybrid interaction between recently joined biotas. Evol. Biol. 2, 321-428]. Climatic oscillations during the Quaternary Ice Ages could explain at least in part the modern geographical distribution of the group.

  11. A new subspecies of Typhlosaurus lineatus Boulenger 1887 ...

    African Journals Online (AJOL)

    1986-10-01

    Oct 1, 1986 ... totale ventrale skubteliings. Geografiese afsondering is oak duidelik. Introduction. The genus TyphlosauTlls Wiegmann. 1834 has recently been revised by Broadley (1968). He lists 12 species and subspecies including three subspecies of Tlinealus. One of these, T. I. subtaenialus Broadley. differs from the.

  12. SPOT Program

    Science.gov (United States)

    Smith, Jason T.; Welsh, Sam J.; Farinetti, Antonio L.; Wegner, Tim; Blakeslee, James; Deboeck, Toni F.; Dyer, Daniel; Corley, Bryan M.; Ollivierre, Jarmaine; Kramer, Leonard; hide

    2010-01-01

    A Spacecraft Position Optimal Tracking (SPOT) program was developed to process Global Positioning System (GPS) data, sent via telemetry from a spacecraft, to generate accurate navigation estimates of the vehicle position and velocity (state vector) using a Kalman filter. This program uses the GPS onboard receiver measurements to sequentially calculate the vehicle state vectors and provide this information to ground flight controllers. It is the first real-time ground-based shuttle navigation application using onboard sensors. The program is compact, portable, self-contained, and can run on a variety of UNIX or Linux computers. The program has a modular objec-toriented design that supports application-specific plugins such as data corruption remediation pre-processing and remote graphics display. The Kalman filter is extensible to additional sensor types or force models. The Kalman filter design is also strong against data dropouts because it uses physical models from state and covariance propagation in the absence of data. The design of this program separates the functionalities of SPOT into six different executable processes. This allows for the individual processes to be connected in an a la carte manner, making the feature set and executable complexity of SPOT adaptable to the needs of the user. Also, these processes need not be executed on the same workstation. This allows for communications between SPOT processes executing on the same Local Area Network (LAN). Thus, SPOT can be executed in a distributed sense with the capability for a team of flight controllers to efficiently share the same trajectory information currently being computed by the program. SPOT is used in the Mission Control Center (MCC) for Space Shuttle Program (SSP) and International Space Station Program (ISSP) operations, and can also be used as a post -flight analysis tool. It is primarily used for situational awareness, and for contingency situations.

  13. Owl: A General-Purpose Numerical Library in OCaml

    OpenAIRE

    Wang, Liang

    2017-01-01

    Owl is a new numerical library developed in the OCaml language. It focuses on providing a comprehensive set of high-level numerical functions so that developers can quickly build up data analytical applications. In this abstract, we will present Owl's design, core components, and its key functionality.

  14. Flammulated Owls (Otus flammeolus) breeding in deciduous forests

    Science.gov (United States)

    Carl D. Marti

    1997-01-01

    The first studies of nesting Flammulated Owls (Otus flammeolus) established the idea that the species needs ponderosa pine (Pinus ponderosa) forests for breeding. In northern Utah, Flammulated Owls nested in montane deciduous forests dominated by quaking aspen (Populus tremuloides). No pines were present but...

  15. in the diet of Verreaux's Eagle Owl Bubo lacteus

    African Journals Online (AJOL)

    two different species from the family Molossidae, and one individual of Lander's. Horseshoe Bat Rhinolophus landeri (Rhinolophidae). Bats are common prey items of owls, not surprising considering that both these animal groups are nocturnal (Marks et al. 1999). However, the proportion of bats in owls' diets varies between ...

  16. Predator facilitation or interference: a game of vipers and owls.

    Science.gov (United States)

    Embar, Keren; Raveh, Ashael; Hoffmann, Ishai; Kotler, Burt P

    2014-04-01

    In predator-prey foraging games, the prey's reaction to one type of predator may either facilitate or hinder the success of another predator. We ask, do different predator species affect each other's patch selection? If the predators facilitate each other, they should prefer to hunt in the same patch; if they interfere, they should prefer to hunt alone. We performed an experiment in a large outdoor vivarium where we presented barn owls (Tyto alba) with a choice of hunting greater Egyptian gerbils (Gerbillus pyramidum) in patches with or without Saharan horned vipers (Cerastes cerastes). Gerbils foraged on feeding trays set under bushes or in the open. We monitored owl location, activity, and hunting attempts, viper activity and ambush site location, and the foraging behavior of the gerbils in bush and open microhabitats. Owls directed more attacks towards patches with vipers, and vipers were more active in the presence of owls. Owls and vipers facilitated each other's hunting through their combined effect on gerbil behavior, especially on full moon nights when vipers are more active. Owls forced gerbils into the bushes where vipers preferred to ambush, while viper presence chased gerbils into the open where they were exposed to owls. Owls and vipers took advantage of their indirect positive effect on each other. In the foraging game context, they improve each other's patch quality and hunting success.

  17. Protozoal hepatitis in a western burrowing owl (Athene cunicularia hypugaea)

    Science.gov (United States)

    Franson, J. Christian

    2017-01-01

    A western burrowing owl (Athene cunicularia hypugaea) found dead in southern California had many light-colored lesions visible grossly on its liver, and histopathology revealed extensive necrosis throughout the hepatic parenchyma. Single-celled organisms were seen in clear spaces within the areas of necrosis. The owl was diagnosed with protozoal hepatitis.

  18. Complete mitochondrial genome of the red-spotted tokay gecko (Gekko gecko, Reptilia: Gekkonidae): comparison of red- and black-spotted tokay geckos.

    Science.gov (United States)

    Qin, Xin-Min; Qian, Fang; Zeng, De-Long; Liu, Xiao-Can; Li, Hui-Min

    2011-10-01

    Here, we sequenced the complete mitochondrial genome of the red-spotted tokay gecko (Squamata: Gekkonidae). The genome is 16,590 bp in size. Its gene arrangement pattern was identical with that of black-spotted tokay gecko. We compared the mitochondrial genome of red-spotted tokay gecko with that of the black-spotted tokay gecko. Nucleotide sequence of the two whole mitochondrial genomes was 97.99% similar, and the relatively high similarity seems to indicate that they may be separated at the subspecies level. The information of mitochondrial genome comparison of the two morphological types of tokay gecko is discussed in detail.

  19. The original descriptions of reptiles and their subspecies.

    Science.gov (United States)

    Uetz, Peter; Stylianou, Alexandrea

    2018-01-24

    By August 2017 an estimated 13,047 species and subspecies of extant reptiles have been described by a total of 6,454 papers and books which are listed in a supplementary file. For 1,052 species a total of 2,452 subspecies (excluding nominate subspecies) had been described by 2017, down from 1,295 species and 4,411 subspecies in 2009, due to the elevation of many subspecies to species. Here we summarize the history of these taxon description beginning with Linnaeus in 1758. While it took 80 years to reach the first 1,000 species in 1838, new species and subspecies descriptions since then have been added at a roughly constant rate of 1000 new taxa every 12-17 years. The only exception were the decades during World Wars I and II and the beginning of this millennium when the rate of descriptions increased to now about 7 years for the last 1,000 taxa. The top 101 most productive herpetologists (in terms of "taxon output") have described more than 8,000 species and subspecies, amounting to over 60% of all currently valid taxa. More than 90% of all species were described in either English (68.2%), German (12.7%) or French (9.3%).

  20. Genomic Comparisons Reveal Microevolutionary Differences in Mycobacterium abscessus Subspecies

    Directory of Open Access Journals (Sweden)

    Joon L. Tan

    2017-10-01

    Full Text Available Mycobacterium abscessus, a rapid-growing non-tuberculous mycobacterium, has been the cause of sporadic and outbreak infections world-wide. The subspecies in M. abscessus complex (M. abscessus, M. massiliense, and M. bolletii are associated with different biologic and pathogenic characteristics and are known to be among the most frequently isolated opportunistic pathogens from clinical material. To date, the evolutionary forces that could have contributed to these biological and clinical differences are still unclear. We compared genome data from 243 M. abscessus strains downloaded from the NCBI ftp Refseq database to understand how the microevolutionary processes of homologous recombination and positive selection influenced the diversification of the M. abscessus complex at the subspecies level. The three subspecies are clearly separated in the Minimum Spanning Tree. Their MUMi-based genomic distances support the separation of M. massiliense and M. bolletii into two subspecies. Maximum Likelihood analysis through dN/dS (the ratio of number of non-synonymous substitutions per non-synonymous site, to the number of synonymous substitutions per synonymous site identified distinct genes in each subspecies that could have been affected by positive selection during evolution. The results of genome-wide alignment based on concatenated locally-collinear blocks suggest that (a recombination has affected the M. abscessus complex more than mutation and positive selection; (b recombination occurred more frequently in M. massiliense than in the other two subspecies; and (c the recombined segments in the three subspecies have come from different intra-species and inter-species origins. The results lead to the identification of possible gene sets that could have been responsible for the subspecies-specific features and suggest independent evolution among the three subspecies, with recombination playing a more significant role than positive selection in the

  1. Genomic Comparisons Reveal Microevolutionary Differences in Mycobacterium abscessus Subspecies

    Science.gov (United States)

    Tan, Joon L.; Ng, Kee P.; Ong, Chia S.; Ngeow, Yun F.

    2017-01-01

    Mycobacterium abscessus, a rapid-growing non-tuberculous mycobacterium, has been the cause of sporadic and outbreak infections world-wide. The subspecies in M. abscessus complex (M. abscessus, M. massiliense, and M. bolletii) are associated with different biologic and pathogenic characteristics and are known to be among the most frequently isolated opportunistic pathogens from clinical material. To date, the evolutionary forces that could have contributed to these biological and clinical differences are still unclear. We compared genome data from 243 M. abscessus strains downloaded from the NCBI ftp Refseq database to understand how the microevolutionary processes of homologous recombination and positive selection influenced the diversification of the M. abscessus complex at the subspecies level. The three subspecies are clearly separated in the Minimum Spanning Tree. Their MUMi-based genomic distances support the separation of M. massiliense and M. bolletii into two subspecies. Maximum Likelihood analysis through dN/dS (the ratio of number of non-synonymous substitutions per non-synonymous site, to the number of synonymous substitutions per synonymous site) identified distinct genes in each subspecies that could have been affected by positive selection during evolution. The results of genome-wide alignment based on concatenated locally-collinear blocks suggest that (a) recombination has affected the M. abscessus complex more than mutation and positive selection; (b) recombination occurred more frequently in M. massiliense than in the other two subspecies; and (c) the recombined segments in the three subspecies have come from different intra-species and inter-species origins. The results lead to the identification of possible gene sets that could have been responsible for the subspecies-specific features and suggest independent evolution among the three subspecies, with recombination playing a more significant role than positive selection in the diversification

  2. Increase in distribution records of owl species in Manitoba based on a volunteer nocturnal survey using Boreal Owl (Aegolius funereus) and Great Gray Owl (Strix nebulosa) playback

    Science.gov (United States)

    James R. Duncan; Patricia A. Duncan

    1997-01-01

    From 1991 through 1995, extensive owl surveys were conducted in late March and early April in Manitoba. Prior to these surveys, distribution records of owls covered only 16-71 per cent of their expected range in Manitoba. The degree to which the survey increased the documented range varied from no increase (6 of 12 species) up to an 88 per cent increase for the...

  3. OWLS as platform technology in OPTOS satellite

    Science.gov (United States)

    Rivas Abalo, J.; Martínez Oter, J.; Arruego Rodríguez, I.; Martín-Ortega Rico, A.; de Mingo Martín, J. R.; Jiménez Martín, J. J.; Martín Vodopivec, B.; Rodríguez Bustabad, S.; Guerrero Padrón, H.

    2017-12-01

    The aim of this work is to show the Optical Wireless Link to intraSpacecraft Communications (OWLS) technology as a platform technology for space missions, and more specifically its use within the On-Board Communication system of OPTOS satellite. OWLS technology was proposed by Instituto Nacional de Técnica Aeroespacial (INTA) at the end of the 1990s and developed along 10 years through a number of ground demonstrations, technological developments and in-orbit experiments. Its main benefits are: mass reduction, flexibility, and simplification of the Assembly, Integration and Tests phases. The final step was to go from an experimental technology to a platform one. This step was carried out in the OPTOS satellite, which makes use of optical wireless links in a distributed network based on an OLWS implementation of the CAN bus. OPTOS is the first fully wireless satellite. It is based on the triple configuration (3U) of the popular Cubesat standard, and was completely built at INTA. It was conceived to procure a fast development, low cost, and yet reliable platform to the Spanish scientific community, acting as a test bed for space born science and technology. OPTOS presents a distributed OBDH architecture in which all satellite's subsystems and payloads incorporate a small Distributed On-Board Computer (OBC) Terminal (DOT). All DOTs (7 in total) communicate between them by means of the OWLS-CAN that enables full data sharing capabilities. This collaboration allows them to perform all tasks that would normally be carried out by a centralized On-Board Computer.

  4. XQOWL: An Extension of XQuery for OWL Querying and Reasoning

    Directory of Open Access Journals (Sweden)

    Jesús M. Almendros-Jiménez

    2015-01-01

    Full Text Available One of the main aims of the so-called Web of Data is to be able to handle heterogeneous resources where data can be expressed in either XML or RDF. The design of programming languages able to handle both XML and RDF data is a key target in this context. In this paper we present a framework called XQOWL that makes possible to handle XML and RDF/OWL data with XQuery. XQOWL can be considered as an extension of the XQuery language that connects XQuery with SPARQL and OWL reasoners. XQOWL embeds SPARQL queries (via Jena SPARQL engine in XQuery and enables to make calls to OWL reasoners (HermiT, Pellet and FaCT++ from XQuery. It permits to combine queries against XML and RDF/OWL resources as well as to reason with RDF/OWL data. Therefore input data can be either XML or RDF/OWL and output data can be formatted in XML (also using RDF/OWL XML serialization.

  5. Semantic Web Services with Web Ontology Language (OWL-S) - Specification of Agent-Services for DARPA Agent Markup Language (DAML)

    National Research Council Canada - National Science Library

    Sycara, Katia P

    2006-01-01

    CMU did research and development on semantic web services using OWL-S, the semantic web service language under the Defense Advanced Research Projects Agency- DARPA Agent Markup Language (DARPA-DAML) program...

  6. Mapping between the OBO and OWL ontology languages.

    Science.gov (United States)

    Tirmizi, Syed Hamid; Aitken, Stuart; Moreira, Dilvan A; Mungall, Chris; Sequeda, Juan; Shah, Nigam H; Miranker, Daniel P

    2011-03-07

    Ontologies are commonly used in biomedicine to organize concepts to describe domains such as anatomies, environments, experiment, taxonomies etc. NCBO BioPortal currently hosts about 180 different biomedical ontologies. These ontologies have been mainly expressed in either the Open Biomedical Ontology (OBO) format or the Web Ontology Language (OWL). OBO emerged from the Gene Ontology, and supports most of the biomedical ontology content. In comparison, OWL is a Semantic Web language, and is supported by the World Wide Web consortium together with integral query languages, rule languages and distributed infrastructure for information interchange. These features are highly desirable for the OBO content as well. A convenient method for leveraging these features for OBO ontologies is by transforming OBO ontologies to OWL. We have developed a methodology for translating OBO ontologies to OWL using the organization of the Semantic Web itself to guide the work. The approach reveals that the constructs of OBO can be grouped together to form a similar layer cake. Thus we were able to decompose the problem into two parts. Most OBO constructs have easy and obvious equivalence to a construct in OWL. A small subset of OBO constructs requires deeper consideration. We have defined transformations for all constructs in an effort to foster a standard common mapping between OBO and OWL. Our mapping produces OWL-DL, a Description Logics based subset of OWL with desirable computational properties for efficiency and correctness. Our Java implementation of the mapping is part of the official Gene Ontology project source. Our transformation system provides a lossless roundtrip mapping for OBO ontologies, i.e. an OBO ontology may be translated to OWL and back without loss of knowledge. In addition, it provides a roadmap for bridging the gap between the two ontology languages in order to enable the use of ontology content in a language independent manner.

  7. Semantic Web Services with Web Ontology Language (OWL-S) - Specification of Agent-Services for DARPA Agent Markup Language (DAML)

    Science.gov (United States)

    2006-08-01

    Sycara, and T. Nishimura, "Towards a Semantic Web Ecommerce ," in Proceedings of 6th Conference on Business Information Systems (BIS2003), Colorado...the ontology used is the fictitious ontology http://fly.com/Onto. The advantage of using concepts from Web-addressable ontologies, rather than XML...the advantage of the OWL-S approach compared with other approaches, namely BPEL4WS and WS-CDL, is that OWL-S allows the flexibility to change the

  8. Multilocus sequence typing reveals a novel subspeciation of Lactobacillus delbrueckii.

    Science.gov (United States)

    Tanigawa, Kana; Watanabe, Koichi

    2011-03-01

    Currently, the species Lactobacillus delbrueckii is divided into four subspecies, L. delbrueckii subsp. delbrueckii, L. delbrueckii subsp. bulgaricus, L. delbrueckii subsp. indicus and L. delbrueckii subsp. lactis. These classifications were based mainly on phenotypic identification methods and few studies have used genotypic identification methods. As a result, these subspecies have not yet been reliably delineated. In this study, the four subspecies of L. delbrueckii were discriminated by phenotype and by genotypic identification [amplified-fragment length polymorphism (AFLP) and multilocus sequence typing (MLST)] methods. The MLST method developed here was based on the analysis of seven housekeeping genes (fusA, gyrB, hsp60, ileS, pyrG, recA and recG). The MLST method had good discriminatory ability: the 41 strains of L. delbrueckii examined were divided into 34 sequence types, with 29 sequence types represented by only a single strain. The sequence types were divided into eight groups. These groups could be discriminated as representing different subspecies. The results of the AFLP and MLST analyses were consistent. The type strain of L. delbrueckii subsp. delbrueckii, YIT 0080(T), was clearly discriminated from the other strains currently classified as members of this subspecies, which were located close to strains of L. delbrueckii subsp. lactis. The MLST scheme developed in this study should be a useful tool for the identification of strains of L. delbrueckii to the subspecies level.

  9. OWL2 benchmarking for the evaluation of knowledge based systems.

    Directory of Open Access Journals (Sweden)

    Sher Afgun Khan

    Full Text Available OWL2 semantics are becoming increasingly popular for the real domain applications like Gene engineering and health MIS. The present work identifies the research gap that negligible attention has been paid to the performance evaluation of Knowledge Base Systems (KBS using OWL2 semantics. To fulfil this identified research gap, an OWL2 benchmark for the evaluation of KBS is proposed. The proposed benchmark addresses the foundational blocks of an ontology benchmark i.e. data schema, workload and performance metrics. The proposed benchmark is tested on memory based, file based, relational database and graph based KBS for performance and scalability measures. The results show that the proposed benchmark is able to evaluate the behaviour of different state of the art KBS on OWL2 semantics. On the basis of the results, the end users (i.e. domain expert would be able to select a suitable KBS appropriate for his domain.

  10. Several required OWL features for indigenous knowledge management systems

    CSIR Research Space (South Africa)

    Alberts, R

    2012-05-01

    Full Text Available This paper describes the features required of OWL (Web Ontology Language) to realise and enhance Indigenous Knowledge (IK) digital repositories. Several needs for Indigenous Knowledge management systems (IKMSs) are articulated, based on extensive...

  11. Semantically-Rigorous Systems Engineering Modeling Using Sysml and OWL

    Science.gov (United States)

    Jenkins, J. Steven; Rouquette, Nicolas F.

    2012-01-01

    The Systems Modeling Language (SysML) has found wide acceptance as a standard graphical notation for the domain of systems engineering. SysML subsets and extends the Unified Modeling Language (UML) to define conventions for expressing structural, behavioral, and analytical elements, and relationships among them. SysML-enabled modeling tools are available from multiple providers, and have been used for diverse projects in military aerospace, scientific exploration, and civil engineering. The Web Ontology Language (OWL) has found wide acceptance as a standard notation for knowledge representation. OWL-enabled modeling tools are available from multiple providers, as well as auxiliary assets such as reasoners and application programming interface libraries, etc. OWL has been applied to diverse projects in a wide array of fields. While the emphasis in SysML is on notation, SysML inherits (from UML) a semantic foundation that provides for limited reasoning and analysis. UML's partial formalization (FUML), however, does not cover the full semantics of SysML, which is a substantial impediment to developing high confidence in the soundness of any conclusions drawn therefrom. OWL, by contrast, was developed from the beginning on formal logical principles, and consequently provides strong support for verification of consistency and satisfiability, extraction of entailments, conjunctive query answering, etc. This emphasis on formal logic is counterbalanced by the absence of any graphical notation conventions in the OWL standards. Consequently, OWL has had only limited adoption in systems engineering. The complementary strengths and weaknesses of SysML and OWL motivate an interest in combining them in such a way that we can benefit from the attractive graphical notation of SysML and the formal reasoning of OWL. This paper describes an approach to achieving that combination.

  12. Tutorial on Modeling VAT Rules Using OWL-DL

    DEFF Research Database (Denmark)

    Nielsen, Morten Ib; Simonsen, Jakob Grue; Larsen, Ken Friis

    . In an ERP setting such a model could reduce the Total Cost of Ownership (TCO) and increase the quality of the system. We have selected OWL-DL because we believe that description logic is suited for modeling VAT rules due to the decidability of important inference problems that are key to the way we plan...... to use the model and because OWL-DL is relatively intuitive to use....

  13. Spectrophotometry of Artemisia tridentata to quantitatively determine subspecies

    Science.gov (United States)

    Richardson, Bryce; Boyd, Alicia; Tobiasson, Tanner; Germino, Matthew

    2018-01-01

    Ecological restoration is predicated on our abilities to discern plant taxa. Taxonomic identification is a first step in ensuring that plants are appropriately adapted to the site. An example of the need to identify taxonomic differences comes from big sagebrush (Artemisia tridentata). This species is composed of three predominant subspecies occupying distinct environmental niches, but overlap and hybridization are common in ecotones. Restoration of A. tridentata largely occurs using wildland collected seed, but there is uncertainty in the identification of subspecies or mix of subspecies from seed collections. Laboratory techniques that can determine subspecies composition would be desirable to ensure that subspecies match the restoration site environment. In this study, we use spectrophotometry to quantify chemical differences in the water-soluble compound, coumarin. Ultraviolet (UV) absorbance of A. tridentata subsp. vaseyana showed distinct differences among A.t. tridentata and wyomingensis. No UV absorbance differences were detected between A.t. tridentata and wyomingensis. Analyses of samples from > 600 plants growing in two common gardens showed that UV absorbance was unaffected by environment. Moreover, plant tissues (leaves and seed chaff) explained only a small amount of the variance. UV fluorescence of water-eluted plant tissue has been used for many years to indicate A.t. vaseyana; however, interpretation has been subjective. Use of spectrophotometry to acquire UV absorbance provides empirical results that can be used in seed testing laboratories using the seed chaff present with the seed to certify A. tridentata subspecies composition. On the basis of our methods, UV absorbance values 3.1 would indicate either A.t. tridentata or wyomingensis. UV absorbance values between 2.7 and 3.1 would indicate a mixture of A.t. vaseyana and the other two subspecies.

  14. Surveillance test of OWL-2 inpile tube

    International Nuclear Information System (INIS)

    Shimizu, Masatsugu; Itoh, Noboru

    1976-08-01

    A series of irradiation surveillance tests performed in integrity evaluation of an inpile tube for the test loop OWL-2 are described. Specimens were exposed to the neutron fluences from 1 x 10 20 to 3.4 x 10 21 n/cm 2 (>1 MeV), and subjected to post-irradiation tensile test at room temperature and service temperature 285 0 C. The strength increased and the ductility decreased with increasing neutron fluence. The reduction in fracture ductility due to neutron irradiation in the fluence range was insignificant, and the elongation of 33% was retained even for the maximum neutron fluence at 285 0 C. Little decrease of the ductility with fluence indicates that the tube would be in service for long time, ie to the integral fluence of 3.4 x 10 21 n/cm 2 . (auth.)

  15. Rocky Mountain spotted fever

    Science.gov (United States)

    ... spotted fever on the foot Rocky Mountain spotted fever, petechial rash Antibodies Deer and dog tick References McElligott SC, Kihiczak GG, Schwartz RA. Rocky Mountain spotted fever and other rickettsial infections. In: Lebwohl MG, Heymann ...

  16. Ecotoxicological suitability of floodplain habitats in The Netherlands for the little owl (Athene noctua vidalli)

    International Nuclear Information System (INIS)

    Brink, N.W. van den; Groen, N.M.; Jonge, J. de; Bosveld, A.T.C.

    2003-01-01

    PCBs pose a risk to little owls from floodplain habitats. - This study describes the actual risks of exposure to contaminants, which little owls (Athene noctua vidalli) face in Dutch river floodplains. The results indicate that PCBs pose a risk: not only are levels in little owls from floodplains higher than levels found in little owls from a reference site but the PCB patterns in owls from the floodplains also indicate induction of hepatic cytochrome P450 enzymes by dioxin like compounds, possibly PCBs. Of the heavy metals, only cadmium is thought to pose a risk in certain conditions, for example, when little owls are feeding only on earthworms over a prolonged period of time. The results do not indicate any effects on the occurrence of prey items of the little owl like for instance earthworm, beetles and shrews. Hence, it is not expected that little owls will be affected by diminishing prey availability due to contamination

  17. Ecotoxicological suitability of floodplain habitats in The Netherlands for the little owl (Athene noctua vidalli)

    Energy Technology Data Exchange (ETDEWEB)

    Brink, N.W. van den; Groen, N.M.; Jonge, J. de; Bosveld, A.T.C

    2003-03-01

    PCBs pose a risk to little owls from floodplain habitats. - This study describes the actual risks of exposure to contaminants, which little owls (Athene noctua vidalli) face in Dutch river floodplains. The results indicate that PCBs pose a risk: not only are levels in little owls from floodplains higher than levels found in little owls from a reference site but the PCB patterns in owls from the floodplains also indicate induction of hepatic cytochrome P450 enzymes by dioxin like compounds, possibly PCBs. Of the heavy metals, only cadmium is thought to pose a risk in certain conditions, for example, when little owls are feeding only on earthworms over a prolonged period of time. The results do not indicate any effects on the occurrence of prey items of the little owl like for instance earthworm, beetles and shrews. Hence, it is not expected that little owls will be affected by diminishing prey availability due to contamination.

  18. Parental investment and its sensitivity to corticosterone is linked to melanin-based coloration in barn owls.

    Science.gov (United States)

    Almasi, Bettina; Roulin, Alexandre; Jenni-Eiermann, Susanne; Jenni, Lukas

    2008-06-01

    Behavioral and physiological responses to unpredictable changes in environmental conditions are, in part, mediated by glucocorticoids (corticosterone in birds). In polymorphic species, individuals of the same sex and age display different heritable melanin-based color morphs, associated with physiological and reproductive parameters and possibly alternative strategies to cope with variation in environmental conditions. We examined whether the role of corticosterone in resolving the trade-off between self-maintenance and reproductive activities covaries with the size of melanin-based spots displayed on the ventral body side of male barn owls. Administration of corticosterone to simulate physiological stress in males revealed pronounced changes in their food-provisioning rates to nestlings compared to control males. Corticosterone-treated males with small eumelanic spots reduced nestling provisioning rates as compared to controls, and also to a greater degree than did corticosterone-treated males with large spots. Large-spotted males generally exhibited lower parental provisioning and appear insensitive to exogenous corticosterone suggesting that the size of the black spots on the breast feathers predicts the ability to cope with stressful situations. The reduced provisioning rate of corticosterone-treated males caused a temporary reduction in nestling growth rates but, did not affect fledgling success. This suggests that moderately elevated corticosterone levels are not inhibitory to current reproduction but rather trigger behavioral responses to maximize lifetime reproductive success.

  19. Are owl pellets good estimators of prey abundance?

    Directory of Open Access Journals (Sweden)

    Analia Andrade

    2016-07-01

    Full Text Available Some ecologists have been skeptics about the use of owl pellets to estimate small mammal’s fauna. This is due to the assumptions required by this method: (a that owls hunt at random, and (b that pellets represent a random sample from the environment. We performed statistical analysis to test these assumptions and to assess the effectiveness of Barn owl pellets as a useful estimator of field abundances of its preys. We used samples collected in the arid Extra-Andean Patagonia along an altitudinal environmental gradient from lower Monte ecoregion to upper Patagonian steppe ecoregion, with a mid-elevation ecotone. To test if owls hunt at random, we estimated expected pellet frequency by creating a distribution of random pellets, which we compared with data using a simulated chi-square. To test if pellets represent a random sample from the environment, differences between ecoregions were evaluated by PERMANOVAs with Bray–Curtis dissimilarities. We did not find evidence that owls foraged non-randomly. Therefore, we can assume that the proportions of the small mammal’s species in the diet are representative of the proportions of the species in their communities. Only Monte is different from other ecoregions. The ecotone samples are grouped with those of Patagonian steppes. There are no real differences between localities in the small mammal’s abundances in each of these ecoregions and/or Barn owl pellets cannot detect patterns at a smaller spatial scale. Therefore, we have no evidence to invalidate the use of owl pellets at an ecoregional scale.

  20. Use of UV absorption for identifying subspecies of Artemisia tridentata

    International Nuclear Information System (INIS)

    Spomer, G.G.; Henderson, D.M.

    1988-01-01

    Use of UV absorption spectra for identifying subspecies of Artemisia tridentata Nutt. was investigated by analyzing the relative optical densities of alcohol extracts from herbarium and fresh plant material at 240 nm, 250 nm, and 265 nm. In all but 1 comparison, mean relative optical densities were significantly different (p=0.95) between subspecies, but intraplant and intrasubspecies variation and overlap was found to be too large to permit use of UV absorbance alone for identifying individual specimens. These results held whether dry or fresh leaves were extracted, or whether methanol or ethanol was used as the extracting solvent. (author)

  1. Chapter 16. Conservation status of great gray owls in the United States

    Science.gov (United States)

    Gregory D. Hayward

    1994-01-01

    Previous chapters outlined the biology and ecology of great gray owls as well as the ecology of this species in the western United States. That technical review provides the basis to assess the current conservation status of great gray owls in the United States. Are populations of great gray owls in the United States currently threatened? Are current land management...

  2. Habitat selection by owls in a seasonal semi-deciduous forest in southern Brazil

    Directory of Open Access Journals (Sweden)

    W. Menq

    Full Text Available Abstract This paper tested the hypothesis that the structural components of vegetation have impact over the distribution of owl species in a fragment of a semi-deciduous seasonal forest. This paper also determined which vegetation variables contributed to the spatial distribution of owl species. It was developed in the Perobas Biological Reserve (PBR between September and December 2011. To conduct the owl census, a playback technique was applied at hearing points distributed to cover different vegetation types in the study area. A total of 56 individual owls of six species were recorded: Tropical Screech-Owl (Megascops choliba, Black-capped Screech-Owl (Megascops atricapilla, Tawny-browed Owl (Pulsatrix koeniswaldiana, Ferruginous Pygmy-Owl (Glaucidium brasilianum, Mottled Owl (Strix virgata and Stygian Owl (Asio stygius. The results suggest that the variables of vegetation structure have impact on the occurrence of owls. The canopy height, the presence of hollow trees, fallen trees and glades are the most important structural components influencing owl distribution in the sampled area.

  3. Book review: Peeters, H. 2007. Field guide to owls of California and the West

    Science.gov (United States)

    Eric D. Forsman

    2010-01-01

    Field Guide to Owls of California and the West. Written primarily for nonprofessionals,this little field guide is a treasure trove of published and unpublished information on the natural history and distribution of owls in the western United States. It covers just about everything you could want to know about owls, from why they take dust baths, to facultative...

  4. Biology and conservation of owls of the Northern Hemisphere: 2nd International symposium

    Science.gov (United States)

    James R. Duncan; David H. Johnson; Thomas H. Nicholls

    1997-01-01

    The proceeding contains 91 papers authored by 143 people from 13 countries covering biology, ecology, monitoring, habitat-use, status conservation, education, genetics, toxicology, diet, migration, mortality and related topics concerning owls of the Northern Hemisphere. Thirty-three owl species are discussed. Information presented will be useful in owl conservation,...

  5. Derivation of Event-B Models from OWL Ontologies

    Directory of Open Access Journals (Sweden)

    Alkhammash Eman H.

    2016-01-01

    Full Text Available The derivation of formal specifications from large and complex requirements is a key challenge in systems engineering. In this paper we present an approach that aims to address this challenge by building formal models from OWL ontologies. An ontology is used in the field of knowledge representation to capture a clear view of the domain and to produce a concise and unambiguous set of domain requirements. We harness the power of ontologies to handle inconsistency of domain requirements and produce clear, concise and unambiguous set of domain requirements for Event-B modelling. The proposed approach works by generating Attempto Controlled English (ACE from the OWL ontology and then maps the ACE requirements to develop Event-B models. ACE is a subset of English that can be unambiguously translated into first-order logic. There is an injective mapping between OWL ontology and a subset of ACE. ACE is a suitable interlingua for producing the mapping between OWL and Event-B models for many reasons. Firstly, ACE is easy to learn and understand, it hides the math of OWL and would be natural to use by everybody. Secondly ACE has a parser that converts ACE texts into Discourse Representation Structures (DRS. Finally, ACE can be extended to target a richer syntactic subset of Event-B which ultimately would facilitate the translation of ACE requirements to Event-B.

  6. Mutual mortality of great horned owl and southern black racer: a potential risk of raptors preying on snakes

    Science.gov (United States)

    Roger W. Perry; Raymond E. Brown; D. Craig Rudolph

    2001-01-01

    We encountered a dead southern black racer snake (Coluber constrictor priapus) coiled around a dead Great Horned Owl (Bubo virginianus). We suggest the owl was strangled by the snake before the snake did of wounds inflicted by the owl. There are previous reports of intense physical struggle between Great Horned Owls (and...

  7. Habitat use and movements of breeding male Boreal Owls (Aegolius funereus) in northeast Minnesota as determined by radio telemetry

    Science.gov (United States)

    William H. Lane; David E. Andersen; Thomas H. Nicholls

    1997-01-01

    To determine habitat use and movements of male Boreal Owls (Aegolius funereus) in northeast Minnesota, we monitored 10 radio-equipped owls from 1990-1992. We used mist nets, bal-chartris, and the taped playback recording of the primary song of the male Boreal Owl to trap territorial male owls during the springtime breeding season.

  8. The complete mitochondrial DNA genome of a greater horseshoe bat subspecies, Rhinolophus ferrumequinum quelpartis (Chiroptera: Rhinolophidae).

    Science.gov (United States)

    Yoon, Kwang Bae; Kim, Ji Young; Kim, Hye Ri; Cho, Jae Youl; Park, Yung Chul

    2013-02-01

    There are two subspecies of Rhinolophus ferrumequinum currently recognized in South Korea. The Korean greater horseshoe bat subspecies, Rhinolophus ferrumequinum quelpartis, is distributed only in Jeju Island. The complete mitochondrial genome of the island subspecies was determined and revealed 99.7% similarity to the mainland subspecies Rhinolophus ferrumequinum korai. If d-loop region is excluded, similarity of the two genomes was 99.9%.

  9. The complete mitochondrial genome of a Chinese rufous horseshoe bat subspecies, Rhinolophus sinicus sinicus (Chiroptera: Rhinolophidae).

    Science.gov (United States)

    Sun, Haijian; Dong, Ji; Shi, Huizhen; Ren, Min; Hua, Panyu

    2016-09-01

    There are two subspecies of Rhinolophus sinicus currently recognized in China. In this study, using next generation sequencing approaches, the complete mitochondrial genome of one subspecies R. s. sinicus was obtained. The total length of the genome sequence is 16,898 bp. The arrangement and contents of R. s. sinicus mitochondrial genes exhibit high similarity with other bats of family Rhinolophida. Phylogenetic reconstructions support the sister relationship of the two subspecies and confirm the subspecies status of our specimen.

  10. Psychology Baccalaureates at Work: Major Area Subspecializations, Earnings, and Occupations

    Science.gov (United States)

    Rajecki, D. W.

    2012-01-01

    A Census Bureau national survey identified baccalaureates aged up to 64 years having major area subspecializations labeled "psychology," "industrial/organizational (I/O) psychology," and "counseling psychology." Median 2009 earnings of all such types of baccalaureate psychology alumni were well below the distribution mean of the 153 fields in the…

  11. Palynological characteristics of the heterostylous subspecies of Linum mucronatum Bertol

    Directory of Open Access Journals (Sweden)

    Talebi, S. M.

    2014-12-01

    Full Text Available Linum mucronatum is a heterostylous species from sect. Syllinum with four subspecies in Iran. The present study examines palynological characteristics of the heterostylous subspecies of Linum mucronatum, pollen characters of brevistylous individuals (pins as well as longistylous individuals (thrums of these plants by scanning electron microscope and light microscope using the prolonged acetolysis procedure. Sixteen qualitative and quantitative characters were investigated. Pollen equatorial shapes varied between pin and thrum individuals of each subspecies with the exception of L. mucronatum subsp. assyriacum. Pollen sculptures varied between pin and thrum samples of each subspecies and were seen in the gemmate, clavate and baculate shapes. In addition, quantitative palynological characters differed between plants and ANOVA test showed significant variations for traits such as equatorial length, colpi width and apocolpium diameter. Hetrostylous individuals of each subspecies were separated from others in the UPGMA tree and also in the PCO and PCA plots. This study confirmed variations in pollen features between pin and thrum individuals of each subspecies.Linum mucronatum es una especie con heterostilia, que pertenece a la sección Syllinum del género Linum, y tiene cuatro subespecies en Irán. En el presente estudio se examinan las características palinológicas de las subespecies heterostilas de Linum mucronatum Bertol., así como los caracteres polínicos de individuos de los morfos brevistilo (pin y longistilo (thrum de estas plantas, mediante microscopía electrónica de scanning y microscopía óptica usando el método de acetolisis prolongada. Se estudiaron un total de 16 caracteres cualitativos y cuantitativos. La forma ecuatorial del polen varía entre los morfos pin y thrum en todas las subspecies, excepto en L. mucronatum subsp. assyriacum. La ornamentación también varía entre las muestras de morfos pin y thrum de cada subespecie

  12. Nocturnal raptors (owls: contributions to study of its popularity

    Directory of Open Access Journals (Sweden)

    Maria Lindelia Rincón Hernández

    2017-01-01

    Full Text Available This research characterizes the nocturnal birds of prey on the campus of Universidad Pedagógica y Tecnológica de Colombia (UPTC; in English, Pedagogical and Technological University of Colombia, in addition to the contribution to the study of its popularity, with students in fifth grade from two educational institutions, one, of the urban context, and other, of the rural context. The study involved the implementation of the didactic component to promote recognition of their biological significance in elementary school students. Among the findings two species of nocturnal birds of prey were identified: common currucutú owl (Tropical Screech Owl, Megascops choliba and the barn owl (Tyto alba, with a relative abundance of 12 individuals and 10 individuals, respectively. It also includes changes in perception from students regarding beliefs and superstitions about such species, which favors the recognition of the biological role in the ecosystem and the need for its conservation.

  13. [A new subspecies of Heraclides androgeus (Lepidoptera: Papilionidae) and its biogeographical aspects].

    Science.gov (United States)

    Vargas-Fernández, Isabel; Luis-Martínez, Armando; Llorente-Bousquets, Jorge

    2013-06-01

    A new subspecies of Heraclides androgeus (Lepidoptera: Papilionidae) and its biogeographical aspects. Heraclides androgeus epidaurus was described and illustrated by Godman & Salvin in 1890 based on specimens obtained in Veracruz, indicating that their distribution encompassed both the Pacific and Atlantic sides of Mexico. Later authors commented that there were morphological differences between the male wings from both populations. We analyzed, described and nominated Heraclides androgeus reyesorum ssp. nov. Vargas, Llorente & Luis distributed in the Mexican Pacific coast, based on 62 specimens, and compared it with H a. epidaurus from the Gulf of Mexico, based on more than 200 specimens housed at UNAM: Museo de Zoología, Facultad de Ciencias and the Colección Nacional de Insectos of the Instituto de Biologia, as well as some collections from the USA. The main characters were the width of the yellow and black bands on forewings in males, which had a significant difference between the populations of both sides of Mexico, although some characters were variable and showed partial overlap. In the hindwings, the differences were the extent of the subterminal lunules in dorsal and ventral view. We also analyzed the male genitalia, finding notorious differences in both sclerotic processes of the harpe. Subspecific differences between females refer to the brightness and extent of green spots on the hindwings and the extent of lunules in the ventral view. The greatest abundance of H. a. reyesorum ssp. nov. was in the tropical deciduous forest, with gallery forest and in the lower range of the cloud forest, present at altitudes of 500-800 m and 1000-1 750 m, respectively. We discussed the pattern of endemism due to historical vicariant processes and explain the presence of the new subspecies of H. androgeus and other taxa of specific level.

  14. Morphological Variations of Leading-Edge Serrations in Owls (Strigiformes.

    Directory of Open Access Journals (Sweden)

    Matthias Weger

    Full Text Available Owls have developed serrations, comb-like structures, along the leading edge of their wings. Serrations were investigated from a morphological and a mechanical point of view, but were not yet quantitatively compared for different species. Such a comparative investigation of serrations from species of different sizes and activity patterns may provide new information about the function of the serrations.Serrations on complete wings and on tenth primary remiges of seven owl species were investigated. Small, middle-sized, and large owl species were investigated as well as species being more active during the day and owls being more active during the night. Serrations occurred at the outer parts of the wings, predominantly at tenth primary remiges, but also on further wing feathers in most species. Serration tips were oriented away from the feather rachis so that they faced into the air stream during flight. The serrations of nocturnal owl species were higher developed as demonstrated by a larger inclination angle (the angle between the base of the barb and the rachis, a larger tip displacement angle (the angle between the tip of the serration and the base of the serration and a longer length. Putting the measured data into a clustering algorithm yielded dendrograms that suggested a strong influence of activity pattern, but only a weak influence of size on the development of the serrations.Serrations are supposed to be involved in noise reduction during flight and also depend on the aerodynamic properties that in turn depend on body size. Since especially nocturnal owls have to rely on hearing during prey capture, the more pronounced serrations of nocturnal species lend further support to the notion that serrations have an important function in noise reduction. The differences in shape of the serrations investigated indicate that a silent flight requires well-developed serrations.

  15. Socialization of adult owl monkeys (Aotus sp.) in Captivity.

    Science.gov (United States)

    Williams, Lawrence E; Coke, C S; Weed, J L

    2017-01-01

    Social housing has often been recommended as one-way to address the psychological well-being of captive non-human primates. Published reports have examined methods to socialize compatible animals by forming pairs or groups. Successful socialization rates vary depending on the species, gender, and environment. This study presents a retrospective look at pairing attempts in two species of owl monkeys, Aotus nancymaae and A. azarae, which live in monogamous pairs in the wild. The results of 477 pairing attempt conducted with captive, laboratory housed owl monkeys and 61 hr of behavioral observations are reported here. The greatest success pairing these owl monkeys occurred with opposite sex pairs, with an 82% success rate. Opposite sex pairs were more successful when females were older than males. Female-female pairs were more successful than male-male (MM) pairs (62% vs 40%). Successful pairs stayed together between 3 and 7 years before the animals were separated due to social incompatibility. Vigilance, eating, and sleeping during introductions significantly predicted success, as did the performance of the same behavior in both animals. The results of this analysis show that it is possible to give captive owl monkeys a social alternative even if species appropriate social partners (i.e., opposite sex partners) are not available. The focus of this report is a description of one potential way to enhance the welfare of a specific new world primate, the owl monkey, under laboratory conditions. More important is how the species typical social structure of owl monkeys in nature affects the captive management of this genus. Am. J. Primatol. 79:e22521, 2017. © 2015 Wiley Periodicals, Inc. © 2016 Wiley Periodicals, Inc.

  16. Morphological Variations of Leading-Edge Serrations in Owls (Strigiformes)

    Science.gov (United States)

    Weger, Matthias; Wagner, Hermann

    2016-01-01

    Background Owls have developed serrations, comb-like structures, along the leading edge of their wings. Serrations were investigated from a morphological and a mechanical point of view, but were not yet quantitatively compared for different species. Such a comparative investigation of serrations from species of different sizes and activity patterns may provide new information about the function of the serrations. Results Serrations on complete wings and on tenth primary remiges of seven owl species were investigated. Small, middle-sized, and large owl species were investigated as well as species being more active during the day and owls being more active during the night. Serrations occurred at the outer parts of the wings, predominantly at tenth primary remiges, but also on further wing feathers in most species. Serration tips were oriented away from the feather rachis so that they faced into the air stream during flight. The serrations of nocturnal owl species were higher developed as demonstrated by a larger inclination angle (the angle between the base of the barb and the rachis), a larger tip displacement angle (the angle between the tip of the serration and the base of the serration) and a longer length. Putting the measured data into a clustering algorithm yielded dendrograms that suggested a strong influence of activity pattern, but only a weak influence of size on the development of the serrations. Conclusions Serrations are supposed to be involved in noise reduction during flight and also depend on the aerodynamic properties that in turn depend on body size. Since especially nocturnal owls have to rely on hearing during prey capture, the more pronounced serrations of nocturnal species lend further support to the notion that serrations have an important function in noise reduction. The differences in shape of the serrations investigated indicate that a silent flight requires well-developed serrations. PMID:26934104

  17. Aber-OWL: a framework for ontology-based data access in biology

    KAUST Repository

    Hoehndorf, Robert

    2015-01-28

    Background: Many ontologies have been developed in biology and these ontologies increasingly contain large volumes of formalized knowledge commonly expressed in the Web Ontology Language (OWL). Computational access to the knowledge contained within these ontologies relies on the use of automated reasoning. Results: We have developed the Aber-OWL infrastructure that provides reasoning services for bio-ontologies. Aber-OWL consists of an ontology repository, a set of web services and web interfaces that enable ontology-based semantic access to biological data and literature. Aber-OWL is freely available at http://aber-owl.net. Conclusions: Aber-OWL provides a framework for automatically accessing information that is annotated with ontologies or contains terms used to label classes in ontologies. When using Aber-OWL, access to ontologies and data annotated with them is not merely based on class names or identifiers but rather on the knowledge the ontologies contain and the inferences that can be drawn from it.

  18. SpotADAPT

    DEFF Research Database (Denmark)

    Kaulakiene, Dalia; Thomsen, Christian; Pedersen, Torben Bach

    2015-01-01

    by Amazon Web Services (AWS). The users aiming for the spot market are presented with many instance types placed in multiple datacenters in the world, and thus it is difficult to choose the optimal deployment. In this paper, we propose the framework SpotADAPT (Spot-Aware (re-)Deployment of Analytical...... of typical analytical workloads and real spot price traces. SpotADAPT's suggested deployments are comparable to the theoretically optimal ones, and in particular, it shows good cost benefits for the budget optimization -- on average SpotADAPT is at most 0.3% more expensive than the theoretically optimal...

  19. Chapter 13. Current management situation: Great gray owls

    Science.gov (United States)

    Jon Verner

    1994-01-01

    The breeding range of great gray owls (Strix nebulosa) in the United States includes portions of Alaska, mountains in the western United States including portions of the Cascades and Sierra Nevada ranges and the northern Rockies, and portions of Minnesota, Michigan, Wisconsin, and New York (see Chapter 14 and Map 3). The species is sometimes observed...

  20. Conflict Resolution in Partially Ordered OWL DL Ontologies

    NARCIS (Netherlands)

    Ji, Q.; Gao, Z.; Huang, Z.

    2014-01-01

    Inconsistency handling in OWL DL ontologies is an important problem because an ontology can easily be inconsistent when it is generated or modified. Current approaches to dealing with inconsistent ontologies often assume that there exists a total order over axioms and use such an order to select

  1. Modeling seasonal detection patterns for burrowing owl surveys

    Science.gov (United States)

    Quresh S. Latif; Kathleen D. Fleming; Cameron Barrows; John T. Rotenberry

    2012-01-01

    To guide monitoring of burrowing owls (Athene cunicularia) in the Coachella Valley, California, USA, we analyzed survey-method-specific seasonal variation in detectability. Point-based call-broadcast surveys yielded high early season detectability that then declined through time, whereas detectability on driving surveys increased through the season. Point surveys...

  2. Cross: an OWL wrapper for teasoning on relational databases

    NARCIS (Netherlands)

    Champin, P.A.; Houben, G.J.P.M.; Thiran, Ph.; Parent, C.; Schewe, K.D.; Storey, V.C.; Thalheim, B.

    2007-01-01

    One of the challenges of the Semantic Web is to integrate the huge amount of information already available on the standard Web, usually stored in relational databases. In this paper, we propose a formalization of a logic model of relational databases, and a transformation of that model into OWL, a

  3. Representing chemicals using OWL, description graphs and rules

    CSIR Research Space (South Africa)

    Hastings, J

    2010-06-01

    Full Text Available OWL, Description Graphs and Rules Janna Hastings1;2;3?, Michel Dumontier4, Duncan Hull1, Matthew Horridge5, Christoph Steinbeck1, Ulrike Sattler5, Robert Stevens5, Tertia H orne2, and Katarina Britz2;3 1 European Bioinformatics Institute, UK 2...

  4. Visual search in barn owls: Task difficulty and saccadic behavior.

    Science.gov (United States)

    Orlowski, Julius; Ben-Shahar, Ohad; Wagner, Hermann

    2018-01-01

    How do we find what we are looking for? A target can be in plain view, but it may be detected only after extensive search. During a search we make directed attentional deployments like saccades to segment the scene until we detect the target. Depending on difficulty, the search may be fast with few attentional deployments or slow with many, shorter deployments. Here we study visual search in barn owls by tracking their overt attentional deployments-that is, their head movements-with a camera. We conducted a low-contrast feature search, a high-contrast orientation conjunction search, and a low-contrast orientation conjunction search, each with set sizes varying from 16 to 64 items. The barn owls were able to learn all of these tasks and showed serial search behavior. In a subsequent step, we analyzed how search behavior of owls changes with search complexity. We compared the search mechanisms in these three serial searches with results from pop-out searches our group had reported earlier. Saccade amplitude shortened and fixation duration increased in difficult searches. Also, in conjunction search saccades were guided toward items with shared target features. These data suggest that during visual search, barn owls utilize mechanisms similar to those that humans use.

  5. Brominated flame retardants in Belgian little owl (Athene noctua) eggs

    Energy Technology Data Exchange (ETDEWEB)

    Jaspers, V.; Covaci, A.; Maervoet, J.; Dauwe, T.; Schepens, P.; Eens, M. [Antwerp Univ. (Belgium)

    2004-09-15

    Since the 1960s, polybrominated diphenylethers (PBDEs), a class of brominated flame retardants (BFRs), are widely used in textiles, plastics, electronic equipment and other materials. Their massive use has led to the ubiquitous presence of PBDEs in the environment and in biota in which the PBDE levels seem to increase rapidly. High concentrations of some congeners may cause adverse effects in both wildlife and in human populations1 and this has led to the growing concern of scientists over the last decade and to the need for more data on environmental levels of PBDEs. The little owl (Athene noctua) is a small sedentary predator, which makes it a very suitable biomonitoring species. This owl species feeds on a variety of preys, including small mammals and birds, reptiles, amphibians, earthworms and beetles, depending on the season and the local circumstances. Because very limited information is available about contamination levels in the little owl, a study was conducted to determine the concentrations of PBDEs, polybrominated biphenyls (PBBs), polychlorinated biphenyls (PCBs) and organochlorine pesticides (OCPs) in deserted or addled eggs of little owls in Belgium. Eggs have been used successfully as a monitoring tool for persistent organic pollutants (POPs) in several studies. Although the analysis of POPs in deserted or addled eggs has clear limitations, these can be partially avoided by analysing only highly persistent components, for which the original composition will not change due to 'posthatching' microbiological degradation.

  6. Variation in working effort in Danish Little Owls Athene noctua

    DEFF Research Database (Denmark)

    Holsegård-Rasmussen, Miriam H.; Sunde, Peter; Thorup, K.

    2009-01-01

    with extinction. The study is based on 143 one-hour surveys of breeding and 274 surveys of non-breeding Little Owls (27 territorial individuals on 14 territories). Working effort is calculated as the total linear distance between all observed consecutive telemetry fixes during one-hour surveys (Minimum Flight...

  7. tOWL: a temporal Web Ontology Language.

    Science.gov (United States)

    Milea, Viorel; Frasincar, Flavius; Kaymak, Uzay

    2012-02-01

    Through its interoperability and reasoning capabilities, the Semantic Web opens a realm of possibilities for developing intelligent systems on the Web. The Web Ontology Language (OWL) is the most expressive standard language for modeling ontologies, the cornerstone of the Semantic Web. However, up until now, no standard way of expressing time and time-dependent information in OWL has been provided. In this paper, we present a temporal extension of the very expressive fragment SHIN(D) of the OWL Description Logic language, resulting in the temporal OWL language. Through a layered approach, we introduce three extensions: 1) concrete domains, which allow the representation of restrictions using concrete domain binary predicates; 2) temporal representation , which introduces time points, relations between time points, intervals, and Allen's 13 interval relations into the language; and 3) timeslices/fluents, which implement a perdurantist view on individuals and allow for the representation of complex temporal aspects, such as process state transitions. We illustrate the expressiveness of the newly introduced language by using an example from the financial domain.

  8. DIP: A defeasible-inference platform for OWL ontologies

    CSIR Research Space (South Africa)

    Meyer, T

    2014-07-01

    Full Text Available unpublished. We present a defeasible-reasoning system for OWL ontologies demonstrating that we need not devise new decision procedures for certain preferential DLs. Our reasoning procedures are composed purely of classical DL decision steps which allows us...

  9. Methods and materials for capturing and monitoring flammulated owls

    Science.gov (United States)

    Richard T. Reynolds; Brian D. Linkhart

    1984-01-01

    Techniques for locating, capturing, and monitoring activities and movements of Flammulated Owls were developed during four years of study. Adults responded to imitated territorial song throughout the nesting season. Nests were found by noting vocalizations and behaviors associated with courtship-feeding and food transfers between the sexes. After fledging, broods were...

  10. New Eimeria species from the snowy owl (Nyctea scandiaca)

    Czech Academy of Sciences Publication Activity Database

    Volf, J.; Koudela, Břetislav; Modrý, D.

    1998-01-01

    Roč. 45, č. 1 (1998), s. 8 ISSN 1066-5234. [New Eimeria species from the snowy owl (Nyctea scandiaca). 01.01.1998-02.01.1998, Praha] R&D Projects: GA MŠk 8111231 Subject RIV: fp - Other Medical Disciplines

  11. Reproductive working effort in Danish little owl (Athene noctua)

    DEFF Research Database (Denmark)

    Holsegård-Rasmussen, M.; Sunde, P.; Thorup, K.

    Reduced reproductive success, caused by energy constraints during breeding, is suspected to be one of the reasons for an ongoing decline in the Danish population of little owls (Athene noctua). To measure any food stress during the breeding period, working effort was defined as the minimum flight...... distance (the linear distance between consecutive telemetry fixes) during one-hour surveys of radio tagged individuals....

  12. Rocky Mountain Spotted Fever

    Science.gov (United States)

    ... with facebook share with twitter share with linkedin Rocky Mountain Spotted Fever Credit: CDC A male cayenne tick, Amblyomma cajennense, ... and New Mexico. Why Is the Study of Rocky Mountain Spotted Fever a Priority for NIAID? Tickborne diseases are becoming ...

  13. Ubiquity of Polynucleobacter necessarius subspecies asymbioticus results from ecological diversification

    Science.gov (United States)

    Jezbera, Jan; Jezberová, Jitka; Brandt, Ulrike; Hahn, Martin W

    2011-01-01

    The subspecies Polynucleobacter necessarius asymbioticus (> 99% 16S rRNA similarity) has a cosmopolitan distribution and a ubiquitous occurrence in lentic freshwater habitats. We tested if the observed ubiquity of these free-living planktonic freshwater bacteria results from a euryoecious (generalist) adaptation of P. n. asymbioticus strains, or from ecological diversification within the subspecies. We developed a reverse line blot hybridization assay enabling the cultivation-independent detection of 13 groups within the subspecies in environmental samples. A set of 121 lentic freshwater habitats, spanning a broad variety of habitat types (e.g. pH levels ranging from 3.8 to 8.5) was investigated for the presence of these 13 P. n. asymbioticus groups. Statistical analyses of the reverse line blot hybridization detections revealed pronounced differences in habitat preferences of several of the groups. Their preferences differed regarding pH, conductivity, dissolved organic carbon and oxygen concentration of habitats. For some groups, differences in environmental preferences resulted even in complete niche separation between them. The revealed differences in habitat preferences suggest that the previously reported ubiquity of P. n. asymbioticus results from ecological diversification within the taxon and not from generalist adaptation of strains. PMID:21208356

  14. Barn Owl (Tyto alba) and Long-Eared Owl (Asio otus) mortality along motorways in Bourgogne-Champagne: report and suggestions

    Science.gov (United States)

    Hugues Baudvin

    1997-01-01

    The purpose of the study was to find where and why two species of owls were killed by traffic along motorways. Three different factors have an important influence on the mortality of the two owl species: the biotops crossed by motorways, the road elevation and the presence of small rodents, the Common Vole (Microtus arvalis) being most numerous. In...

  15. 77 FR 12985 - Proposed Revised Habitat for the Spotted Owl: Minimizing Regulatory Burdens

    Science.gov (United States)

    2012-03-05

    ... enhance forest resilience. In order to avoid unnecessary costs and burdens and to advance the principles... activity in areas of critical habitat, in accordance with the scientific principles of active forestry... science and economics, including those comments that suggest potential methods for minimizing regulatory...

  16. Realized population change for long-term monitoring: California spotted owl case study

    Science.gov (United States)

    Mary M. Conner; John J. Keane; Claire V. Gallagher; Gretchen Jehle; Thomas E. Munton; Paula A. Shaklee; Ross A. Gerrard

    2013-01-01

    The annual rate of population change (λt) is a good metric for evaluating population performance because it summarizes survival and recruitment rates and can be used for open populations. Another measure of population performance, realized population change (Δt...

  17. Meta-replication reveals nonstationarity in multi-scale habitat selection of Mexican Spotted Owl

    Science.gov (United States)

    Ho Yi Wan; Kevin McGarigal; Joseph L. Ganey; Valentin Lauret; Brad C. Timm; Samuel A. Cushman

    2017-01-01

    Anthropogenic environmental changes are leading to habitat loss and degradation, driving many species to extinction. In this context, habitat models become increasingly important for effective species management and conservation. However, most habitat studies lack replicated study areas and do not properly address the role of nonstationarity and spatial scales in...

  18. Ecological responses by Mexican spotted owls to environmental variation in the Sacramento Mountains, New Mexico

    Science.gov (United States)

    James P. Ward

    2001-01-01

    Understanding the influence of environmental variation on population processes is a fundamental requisite for devising strategies that conserve species. A common tactic for conserving raptor populations is to maintain or manipulate habitat conditions that maintain or increase availability of prey species. A primary purpose of this investigation was to...

  19. 76 FR 37141 - Notice of Availability for Comment: Draft Recovery Plan, First Revision; Mexican Spotted Owl

    Science.gov (United States)

    2011-06-24

    ....gov/recovery/index.html#plans . Alternatively, you may contact the Arizona Ecological Services Office... Ecological Services Office at the above address; Fax: (602) 242-2513; or E-mail: http://www.fws.gov/southwest.... SUPPLEMENTARY INFORMATION: Background Recovery of endangered or threatened animals and plants to the point where...

  20. 77 FR 74688 - Final Recovery Plan, First Revision; Mexican Spotted Owl

    Science.gov (United States)

    2012-12-17

    ... Arizona, Colorado, New Mexico, Texas, and Utah, and south through the Sierra Madre Occidental and Sierra... plants. ADDRESSES: If you wish to view the recovery plan, you may obtain a copy by any one of the... recovery plan. Background Recovery of endangered or threatened animals and plants to the point where they...

  1. Thinning effects on spotted owl prey and other forest-dwelling small mammals

    Science.gov (United States)

    Todd M. Willson; Eric D. Forsman

    2013-01-01

    Th inning has been promoted as a method for accelerating the development of late-seral habitat and improving the overall health and function of young forests in the Pacifi c Northwest. Population studies have shown early and positive responses to thinning by some small forest-floor mammals (primarily mice, terrestrial voles, and shrews). However, thinning reduces the...

  2. The Harry Potter effect: The rise in trade of owls as pets in Java and Bali, Indonesia

    Directory of Open Access Journals (Sweden)

    Vincent Nijman

    2017-07-01

    Full Text Available Hundreds of species of wild-caught birds are offered for sale in the bird markets of Java and Bali, Indonesia, to meet the demand for the largely-domestic pet and songbird trade. In the past, owls were offered only in very small numbers in these bird markets but since the release of the Harry Potter series in Indonesia in the early 2000s their popularity as pets has increased. Whereas in the past owls were collective known as Burung Hantu (“Ghost birds”, in the bird markets they are now commonly referred to as Burung Harry Potter (“Harry Potter birds”. We made a retrospective quantitative assessment of the abundance of owls in the bird markets (1979–2010 and conducted 109 surveys in 20 bird markets in 2012–2016 to quantify owls in trade. In the 1980s, 1990s and early 2000s owls were rarely recorded in Indonesia's bird markets, typically one or two and up to five per survey, and frequently no owls were recorded at all. The trade was largely confined to small scops owls. In the late 2000s more species were offered for sale, including barn and bay owls, and larger owl species such as wood-owls, eagle-owls and fish-owls; typically 10 + owls were observed per survey. In recent years, the number of owl species increased even more, and on average we recorded 17 owls per survey, yielding a total of 1810 owls, and in >90% of the surveys owls were present. In the larger bird markets in Jakarta and Bandung typically 30 to 60 owls are on offer of up to 8 species at a time. The number of owls as a proportion of all birds in the markets increased from 0.43% post 2008, suggesting a delayed Harry Potter effect. Over this period, common species have become cheaper and less common ones have become more expensive. The owls are largely, if not exclusively, wild-caught and are sold into the domestic pet market. The release of Harry Potter films and novels in Indonesia coincided with the rise of the Internet and social media and, with some delay, the

  3. A Process for the Representation of openEHR ADL Archetypes in OWL Ontologies.

    Science.gov (United States)

    Porn, Alex Mateus; Peres, Leticia Mara; Didonet Del Fabro, Marcos

    2015-01-01

    ADL is a formal language to express archetypes, independent of standards or domain. However, its specification is not precise enough in relation to the specialization and semantic of archetypes, presenting difficulties in implementation and a few available tools. Archetypes may be implemented using other languages such as XML or OWL, increasing integration with Semantic Web tools. Exchanging and transforming data can be better implemented with semantics oriented models, for example using OWL which is a language to define and instantiate Web ontologies defined by W3C. OWL permits defining significant, detailed, precise and consistent distinctions among classes, properties and relations by the user, ensuring the consistency of knowledge than using ADL techniques. This paper presents a process of an openEHR ADL archetypes representation in OWL ontologies. This process consists of ADL archetypes conversion in OWL ontologies and validation of OWL resultant ontologies using the mutation test.

  4. Effects of radiotransmitter necklaces on behaviors of adult male western burrowing owls

    Science.gov (United States)

    Chipman, E.D.; McIntyre, N.E.; Ray, J.D.; Wallace, M.C.; Boal, C.W.

    2007-01-01

    We studied the behavioral effects of necklace-style radiotransmitters on breeding male western burrowing owls (Athene cunicularia hypugaea) in 2 areas of northwestern Texas, USA, in 2004 and 2005. We tested the hypothesis that transmittered owls would spend time interacting with their necklaces and as a result spend less time in vigilance and resting activities than would nontransmittered owls. Nontransmittered owls (n = 6) spent significantly more time being vigilant (P = 0.007) than did transmittered owls (n = 3) in 2004, who spent significant amounts of time interacting with their necklaces. In 2005, behaviors of transmittered owls (n = 8) were significantly different (P of time interacting with their necklaces, they appeared to habituate to the presence of the transmitters within a relatively short period (<1 week), and necklaces did not affect survivorship or fitness in the short-term.

  5. Burrowing owl nesting productivity: A comparison between artificial and natural burrows on and off golf courses

    Science.gov (United States)

    Smith, M.D.; Conway, C.J.; Ellis, L.A.

    2005-01-01

    Burrowing owl (Athene cunicularia) populations are declining in many portions of their range, and lack of suitable nesting burrows is thought to be one reason for observed declines. Burrowing owls are attracted to golf courses because the birds generally nest and forage in short-grass, open areas, yet golf courses seldom have suitable nesting burrows. We examined the efficacy of installing artificial nesting burrows on golf courses as a way to help restore local burrowing owl populations. From 2001-2004 we monitored over 175 natural burrows off golf courses, 14 natural burrows on golf courses, 86 artificial burrows off golf courses, and 130 artificial burrows on golf courses. Owls located and used 8 of the 130 artificial burrows installed on golf courses (4 were used as nests). Owls selected burrows that were closer to existing natural burrows, farther from maintained areas (areas receiving turf maintenance by golf course staff), and farther from sprinkler heads. All 4 of the artificial burrows used as nests successfully fledged young, and annual site fidelity for owls nesting on golf courses was higher than for owls nesting off golf courses. However, annual fecundity of owls nesting on golf courses was lower than that of owls nesting off golf courses. If golf courses have sufficiently large nonmaintained areas and there are nesting owls nearby, course managers potentially can help in restoring local burrowing owl populations by installing artificial nesting burrows on the periphery of the course. However, the low fecundity on golf courses reported here should be more thoroughly examined before artificial burrows are used to attract owls to golf courses.

  6. Spatial behaviour of little owls (Athene noctua) in a decreasing farmland population in Denmark

    DEFF Research Database (Denmark)

    Sunde, P.; Thorup, K.; Jacobsen, L. B.

    We describe basic spatial behaviour and social organisation in the small and declining Danish population of little owls. The behaviour was mainly studied using radio tracking during 2005-2007 of 14 pairs of little owls, representing a total of 29 individuals.......We describe basic spatial behaviour and social organisation in the small and declining Danish population of little owls. The behaviour was mainly studied using radio tracking during 2005-2007 of 14 pairs of little owls, representing a total of 29 individuals....

  7. Genetic subspecies diversity of the chimpanzee CD4 virus-receptor gene

    DEFF Research Database (Denmark)

    Hvilsom, Christina; Carlsen, Frands; Siegismund, Hans R

    2008-01-01

    six among the subspecies of chimpanzees. We found the CD4 receptor to be conserved in individuals belonging to the P. t. verus subspecies and divergent from the other three subspecies, which harbored highly variable CD4 receptors. The CD4 receptor of chimpanzees differed from that of humans. We...... question whether the observed diversity can explain the species-specific differences in susceptibility to and pathogenicity of SIV/HIV....

  8. Taxonomic considerations in listing subspecies under the U.S. Endangered Species Act.

    Science.gov (United States)

    Haig, Susan M; Beever, Erik A; Chambers, Steven M; Draheim, Hope M; Dugger, Bruce D; Dunham, Susie; Elliott-Smith, Elise; Fontaine, Joseph B; Kesler, Dylan C; Knaus, Brian J; Lopes, Iara F; Loschl, Pete; Mullins, Thomas D; Sheffield, Lisa M

    2006-12-01

    The U.S. Endangered Species Act (ESA) allows listing of subspecies and other groupings below the rank of species. This provides the U.S. Fish and Wildlife Service and the National Marine Fisheries Service with a means to target the most critical unit in need of conservation. Although roughly one-quarter of listed taxa are subspecies, these management agencies are hindered by uncertainties about taxonomic standards during listing or delisting activities. In a review of taxonomic publications and societies, we found few subspecies lists and none that stated standardized criteria for determining subspecific taxa. Lack of criteria is attributed to a centuries-old debate over species and subspecies concepts. Nevertheless, the critical need to resolve this debate for ESA listings led us to propose that minimal biological criteria to define disjunct subspecies (legally or taxonomically) should include the discreteness and significance criteria of distinct population segments (as defined under the ESA). Our subspecies criteria are in stark contrast to that proposed by supporters of the phylogenetic species concept and provide a clear distinction between species and subspecies. Efforts to eliminate or reduce ambiguity associated with subspecies-level classifications will assist with ESA listing decisions. Thus, we urge professional taxonomic societies to publish and periodically update peer-reviewed species and subspecies lists. This effort must be paralleled throughout the world for efficient taxonomic conservation to take place.

  9. Differentiation of Melipona quadrifasciata L. (Hymenoptera, Apidae, Meliponini subspecies using cytochrome b PCR-RFLP patterns

    Directory of Open Access Journals (Sweden)

    Rogério O. Souza

    2008-01-01

    Full Text Available Melipona quadrifasciata quadrifasciata and M. quadrifasciata anthidioides are subspecies of M. quadrifasciata, a stingless bee species common in coastal Brazil. These subspecies are discriminated by the yellow stripe pattern of the abdominal tergites. We found Vsp I restriction patterns in the cytochrome b region closely associated to each subspecies in 155 M. quadrifasciata colonies of different geographical origin. This mitochondrial DNA molecular marker facilitates diagnosis of M. quadrifasciata subspecies matrilines and can be used to establish their natural distribution and identify hybrid colonies.

  10. Reproduction in eastern screech-owls fed selenium

    Science.gov (United States)

    Wiemeyer, Stanley N.; Hoffman, D.J.

    1996-01-01

    Raptors are occasionally exposed to excessive selenium from contaminated prey, but the effects of this exposure on reproduction are unknown. Therefore, we fed captive eastern screech-owls (Otus asio) diets containing 0, 4.4, or 13.2 ppm (wet wt) added selenium in the form of seleno-DL-methionine. Adult mass at sacrifice and reproductive success of birds receiving 13.2 ppm selenium were depressed (P biochemistries indicative of oxidative stress were affected (P < 0.05) in 5-day-old nestlings from parents fed 4.4 ppm selenium and included a 19% increase in glutathione peroxidase activity, a 43% increase in the ratio of oxidized glutathione (GSSG) to reduced glutathione (GSH), and a 17% increase in lipid peroxidation. Based on reproductive effects relative to dietary exposure, sensitivity of eastern screech-owls to selenium was similar to that of black-crowned night-herons (Nycticorax nycticorax) but less than that of mallards (Anas platyrhynchos).

  11. Airborne ocean water lidar (OWL) real time processor (RTP)

    Science.gov (United States)

    Hryszko, M.

    1995-03-01

    The Hyperflo Real Time Processor (RTP) was developed by Pacific-Sierra Research Corporation as a part of the Naval Air Warfare Center's Ocean Water Lidar (OWL) system. The RTP was used for real time support of open ocean field tests at Barbers Point, Hawaii, in March 1993 (EMERALD I field test), and Jacksonville, Florida, in July 1994 (EMERALD I field test). This report describes the system configuration, and accomplishments associated with the preparation and execution of these exercises. This document is intended to supplement the overall test reports and provide insight into the development and use of the PTP. A secondary objective is to provide basic information on the capabilities, versatility and expandability of the Hyperflo RTP for possible future projects. It is assumed herein that the reader has knowledge of the OWL system, field test operations, general lidar processing methods, and basic computer architecture.

  12. Thermal adaptiveness of plumage color in screech owls

    Science.gov (United States)

    Mosher, James A.; Henny, Charles J.

    1976-01-01

    Clinal variation in the relative proportions of red and gray plum- age phases in Screech Owls (Otus asio) was analyzed by Owen (1963) and Marshall (1967). This variation was well known prior to Owen's work, but was misinterpreted (Baird, et al. 1874, Hasbrouck 1893, Allen 1893).]Laurel VanCamp and Charles Henny (MS) have 30 years of data on a northern Ohio Screech Owl population. They observed an over- winter decline (from about 25% to 15%) in the proportion of red phase birds in the winter of 1951-52. This decline was correlated with a severe winter of above normal snowfall and below average temperatures. They examined banding and recovery data and found overwinter survival of red and gray birds to be the same except for this one severe winter when 44% more red phase birds were lost than grays (VanCamp and Henny MS). Differential mortality was reported by Gullion and Marshall (1968) for red and gray phase Ruffed Grouse (Bonasa umbellus) where snow conditions for roosting is apparently the critical factor for grouse overwinter survival and is related to predation. Snow- roosting has not, to our knowledge, been observed in Screech Owls. VanCamp and Henny (MS) discuss the observations of Ruffed Grouse and Screech Owls and suggest that possible thermoregulatory differences between red and gray phase birds could account for differential overwinter survival.Our objective was to test for differences between color phase in oxygen uptake at several ambient temperatures. We hypothesized that oxygen uptake would be greater by red phase birds, especially at lower temperatures.

  13. Barn Owl Productivity Response to Variability of Vole Populations.

    Directory of Open Access Journals (Sweden)

    Petr Pavluvčík

    Full Text Available We studied the response of the barn owl annual productivity to the common vole population numbers and variability to test the effects of environmental stochasticity on their life histories. Current theory predicts that temporal environmental variability can affect long-term nonlinear responses (e.g., production of young both positively and negatively, depending on the shape of the relationship between the response and environmental variables. At the level of the Czech Republic, we examined the shape of the relationship between the annual sum of fledglings (annual productivity and vole numbers in both non-detrended and detrended data. At the districts' level, we explored whether the degree of synchrony (measured by the correlation coefficient and the strength of the productivity response increase (measured by the regression coefficient in areas with higher vole population variability measured by the s-index. We found that the owls' annual productivity increased linearly with vole numbers in the Czech Republic. Furthermore, based on district data, we also found that synchrony between dynamics in owls' reproductive output and vole numbers increased with vole population variability. However, the strength of the response was not affected by the vole population variability. Additionally, we have shown that detrending remarkably increases the Taylor's exponent b relating variance to mean in vole time series, thereby reversing the relationship between the coefficient of variation and the mean. This shift was not responsible for the increased synchrony with vole population variability. Instead, we suggest that higher synchrony could result from high food specialization of owls on the common vole in areas with highly fluctuating vole populations.

  14. ANALYSIS OF A COLLECTION OF BARN OWL TYTO ALBA ...

    African Journals Online (AJOL)

    1969/70, birds made up 1,13 % of the total biomass, and in 1971, 4,75 %. Two birds, P loceus velatus and Que/ea quelea made up 4,55 % of the total biomass. .... Rate o/pellet casting. Table 3 gives the number of pellets collected at the roost and the number of owls present at the roost. TABLE 3. MEAN NUMBER OF ...

  15. A dominance hierarchy of auditory spatial cues in barn owls.

    Directory of Open Access Journals (Sweden)

    Ilana B Witten

    2010-04-01

    Full Text Available Barn owls integrate spatial information across frequency channels to localize sounds in space.We presented barn owls with synchronous sounds that contained different bands of frequencies (3-5 kHz and 7-9 kHz from different locations in space. When the owls were confronted with the conflicting localization cues from two synchronous sounds of equal level, their orienting responses were dominated by one of the sounds: they oriented toward the location of the low frequency sound when the sources were separated in azimuth; in contrast, they oriented toward the location of the high frequency sound when the sources were separated in elevation. We identified neural correlates of this behavioral effect in the optic tectum (OT, superior colliculus in mammals, which contains a map of auditory space and is involved in generating orienting movements to sounds. We found that low frequency cues dominate the representation of sound azimuth in the OT space map, whereas high frequency cues dominate the representation of sound elevation.We argue that the dominance hierarchy of localization cues reflects several factors: 1 the relative amplitude of the sound providing the cue, 2 the resolution with which the auditory system measures the value of a cue, and 3 the spatial ambiguity in interpreting the cue. These same factors may contribute to the relative weighting of sound localization cues in other species, including humans.

  16. CLINICAL EFFECT OF HEMOPARASITE INFECTIONS IN SNOWY OWLS ( BUBO SCANDIACUS).

    Science.gov (United States)

    Baker, Kendra C; Rettenmund, Christy L; Sander, Samantha J; Rivas, Anne E; Green, Kaitlin C; Mangus, Lisa; Bronson, Ellen

    2018-03-01

    Vector-borne hemoparasites are commonly found in avian species. Plasmodium spp., the causative agent of avian malaria, are intraerythrocytic parasites that can cause signs ranging from subclinical infection to severe acute disease. In raptor species, most hemoparasites are associated with subclinical infection and are generally not treated when seen on blood evaluation. This case series reviews five cases of hemoparasite infection in snowy owls ( Bubo scandiacus). These animals were infected with a variety of hemoparasites, including Plasmodium, Haemoproteus, and Leukocytozoon spp. Death of one of these birds due to hemoparasite burden led to a change in the monitoring for and treatment of subclinical hemoparasitic infections in this species. Three subsequently infected snowy owls have been treated with primaquine and chloroquine. The birds that were treated survived infection, and parasite burdens in peripheral blood diminished. Postulated reasons for increased morbidity and mortality associated with hemoparasitic infections in captive snowy owls, as opposed to other raptor species, include stress, concurrent disease, novel pathogen exposure, and elevated environmental temperatures.

  17. Natural epigenetic variation within and among six subspecies of the house sparrow, Passer domesticus.

    Science.gov (United States)

    Riyahi, Sepand; Vilatersana, Roser; Schrey, Aaron W; Ghorbani Node, Hassan; Aliabadian, Mansour; Senar, Juan Carlos

    2017-11-01

    Epigenetic modifications can respond rapidly to environmental changes and can shape phenotypic variation in accordance with environmental stimuli. One of the most studied epigenetic marks is DNA methylation. In the present study, we used the methylation-sensitive amplified polymorphism (MSAP) technique to investigate the natural variation in DNA methylation within and among subspecies of the house sparrow, Passer domesticus We focused on five subspecies from the Middle East because they show great variation in many ecological traits and because this region is the probable origin for the house sparrow's commensal relationship with humans. We analysed house sparrows from Spain as an outgroup. The level of variation in DNA methylation was similar among the five house sparrow subspecies from the Middle East despite high phenotypic and environmental variation, but the non-commensal subspecies was differentiated from the other four (commensal) Middle Eastern subspecies. Further, the European subspecies was differentiated from all other subspecies in DNA methylation. Our results indicate that variation in DNA methylation does not strictly follow subspecies designations. We detected a correlation between methylation level and some morphological traits, such as standardized bill length, and we suggest that part of the high morphological variation in the native populations of the house sparrow is influenced by differentially methylated regions in specific loci throughout the genome. We also detected 10 differentially methylated loci among subspecies and three loci that differentiated between commensal or non-commensal status. Therefore, the MSAP technique detected larger scale differences among the European and non-commensal subspecies, but did not detect finer scale differences among the other Middle Eastern subspecies. © 2017. Published by The Company of Biologists Ltd.

  18. Spinal subspecialization in post-graduate neurosurgical education.

    Science.gov (United States)

    Toyota, Brian D

    2004-05-01

    The growing science and technology of various neurosurgical areas fosters subspecialization. The transmission of this expanding knowledge base to the neurosurgical resident becomes an increasing challenge. A survey of neurosurgical residency program directors was undertaken to evaluate their response to the budding subspecialization of spine surgery within general neurosurgery. A survey requesting background data, educational infrastructure and prevailing opinion was distributed to all 13 neurosurgical program directors in Canada. The responses were tabulated and results recorded. It is upon these results that conclusions and proposed directions are based. The current practice of the overwhelming majority of Canadian academic neurosurgical centers is to have neurosurgical spinal subspecialists working under the umbrella of the general neurosurgical division. A large percentage of neurosurgical program directors in Canada believe that the management of spinal disease, including both intradural procedures and instrumentation, is and should remain an integral part of general neurosurgical training. A consensus statement regarding the requirements of neurosurgical training in spinal disorders is the expressed desire of almost all program directors. A proposed direction and resolution is discussed.

  19. Observations of wintering Snowy Owls (Nyctea scandiaca) at Logan Airport, East Boston, Massachusetts from 1981-1997

    Science.gov (United States)

    Norman Smith

    1997-01-01

    Snowy Owls (Nyctea scandiaca) wintering at Logan International Airport were studied over the 15-year period of 1981-1997. Two-hundred twenty-seven Snowy Owls were banded and color-marked to examine the length of time individual birds stayed at this location and to track the movements elsewhere. Fifty-six owls were re-observed outside of the airport...

  20. West Nile virus and hemoparasites in captive snowy owls (Bubo scandiacus)--management strategies to optimize survival.

    Science.gov (United States)

    Harasym, Carol A

    2008-11-01

    In August 2005, 2 members of a group of 6 captive snowy owls (Bubo scandiacus) in central Saskatchewan died of West Nile virus infection. One of these owls and 3 of the remaining owls had significant numbers of circulating hemoparasites. Management strategies are suggested to reduce morbidity and mortality.

  1. West Nile virus and hemoparasites in captive snowy owls (Bubo scandiacus) — management strategies to optimize survival

    Science.gov (United States)

    Harasym, Carol A.

    2008-01-01

    In August 2005, 2 members of a group of 6 captive snowy owls (Bubo scandiacus) in central Saskatchewan died of West Nile virus infection. One of these owls and 3 of the remaining owls had significant numbers of circulating hemoparasites. Management strategies are suggested to reduce morbidity and mortality. PMID:19183740

  2. West Nile virus and hemoparasites in captive snowy owls (Bubo scandiacus) — management strategies to optimize survival

    OpenAIRE

    Harasym, Carol A.

    2008-01-01

    In August 2005, 2 members of a group of 6 captive snowy owls (Bubo scandiacus) in central Saskatchewan died of West Nile virus infection. One of these owls and 3 of the remaining owls had significant numbers of circulating hemoparasites. Management strategies are suggested to reduce morbidity and mortality.

  3. A Korean Space Situational Awareness Program : OWL Network

    Science.gov (United States)

    Park, J.; Choi, Y.; Jo, J.; Moon, H.; Im, H.; Park, J.

    2012-09-01

    We are going to present a brief introduction to the OWL (Optical Wide-field patroL) network, one of Korean space situational awareness facilities. Primary objectives of the OWL network are 1) to obtain orbital information of Korean domestic LEOs using optical method, 2) to monitor GEO-belt over territory of Korea, and 3) to alleviate collisional risks posed to Korean satellites from space debris. For these purposes, we are planning to build a global network of telescopes which consists of five small wide-field telescopes and one 2m class telescope. The network of small telescopes will be dedicated mainly to the observation of domestic LEOs, but many slots will be open to other scientific programs such as GRB follow-up observations. Main targets of 2m telescope not only include artificial objects such as GEO debris and LEO debris with low inclination and high eccentricity, but also natural objects such as near Earth asteroids. We expect to monitor space objects down to 10cm in size in GEO using the 2m telescope system. Main research topics include size distribution and evolution of space debris. We also expect to utilize this facility for physical characterization and population study of near Earth asteroids. The aperture size of the small telescope system is 0.5m with Rechey-Cretian configuration and its field of view is 1.75 deg x 1.75 deg. It is equipped with 4K CCD with 9um pixel size, and its plate scale is 1.3 arcsec/pixel. A chopper wheel is employed to maximize astrometric solutions in a single CCD frame, and a de-rotator is used to compensate field rotation of the alt-az type mount. We have designed a compact end unit in which three rotating parts (chopper wheel, filter wheel, de-rotator) and a CCD camera are integrated, and dedicated telescope/site control boards for the OWL network. The design of 2m class telescope is still under discussion yet is expected to be fixed in the first half of 2013 at the latest. The OWL network will be operated in a fully

  4. Flammulated, boreal, and great gray owls in the United States: A technical conservation assessment

    Science.gov (United States)

    G. D. Hayward; J. Verner

    1994-01-01

    Flammulated (Otus flammeolus), boreal (Aegolius funereus), and great gray (Strix nebulosa) owls occur over a broad portion of North America and each is designated as a "sensitive species" in four or more USDA Forest Service regions. The insectivorous flammulated owl is a neotropical migrant requiring...

  5. Chapter 11. Conservation status of boreal owls in the United States

    Science.gov (United States)

    Gregory D. Hayward

    1994-01-01

    Previous chapters outlined the biology and ecology of boreal owls as well as the ecology of important vegetation communities based on literature from North America and Europe. That technical review provides the basis to assess the current conservation status of boreal owls in the United States. By conservation status, we mean the demographic condition of the species as...

  6. Enhancing the ifcOWL ontology with an alternative representation for geometric data

    NARCIS (Netherlands)

    Pauwels, P.; Krijnen, T.; Terkaj, W.; Beetz, J.

    2017-01-01

    Over the past few years, several suggestions have been made of how to convert an EXPRESS schema into an OWL ontology. The conversion from EXPRESS to OWL is of particular use to the architectural design and construction industry, because one of the key data models in this domain, namely the Industry

  7. Detecting West Nile virus in owls and raptors by an antigen-capture assay.

    Science.gov (United States)

    Gancz, Ady Y; Campbell, Douglas G; Barker, Ian K; Lindsay, Robbin; Hunter, Bruce

    2004-12-01

    We evaluated a rapid antigen-capture assay (VecTest) for detection of West Nile virus in oropharyngeal and cloacal swabs, collected at necropsy from owls (N = 93) and raptors (N = 27). Sensitivity was 93.5%-95.2% for northern owl species but raptors.

  8. Estimation of food consumption from pellets cast by captive Ural Owls (Strix uralensis)

    Science.gov (United States)

    Aki Higuchi; Manabu T. Abe

    1997-01-01

    There is considerable data in the literature on the diet of the Ural Owl (Strix uralensis) based on pellet analysis. Though it is possible to identify prey items by this method, the volume of food consumption is still unknown. The population of Ural Owls in Japan is declining due to the reduction of old-growth forest and the concurrent loss of...

  9. Using C-OWL for the Alignment and Merging of Medical Ontologies

    NARCIS (Netherlands)

    Stuckenschmidt, Heiner; van Harmelen, Frank; Serafini, Luciano; Bouquet, Paolo; Giunchiglia, Fausto

    2004-01-01

    A number of sophisticated medical ontologies have been created over the past years. With their de-velopment the need for supporting the alignment of different ontologies is gaining importance. We proposed C-OWL, an extension of the Web Ontology Language OWL that supports alignment mappings between

  10. Distribution, abundance, and habitat use of territorial male Boreal Owls (Aegolius funereus) in northeast Minnesota

    Science.gov (United States)

    William H. Lane; David E. Andersen; Thomas H. Nicholls

    1997-01-01

    We conducted nocturnal auditory surveys from 1987-1992 to determine the distribution, abundance, and habitat use of Boreal Owls (Aegolius funereus) in northeast Minnesota. We concentrated our efforts in areas where documented nesting attempts by the owls had occurred, along roadways maintained for winter-time access by motor vehicles, and by...

  11. Aber-OWL: a framework for ontology-based data access in biology

    KAUST Repository

    Hoehndorf, Robert; Slater, Luke; Schofield, Paul N; Gkoutos, Georgios V

    2015-01-01

    these ontologies relies on the use of automated reasoning. Results: We have developed the Aber-OWL infrastructure that provides reasoning services for bio-ontologies. Aber-OWL consists of an ontology repository, a set of web services and web interfaces that enable

  12. Reintroduction of captive-bred African Grass-Owls Tyto capensis ...

    African Journals Online (AJOL)

    This study represents the first attempt to determine post-release survival of a captive-bred owl in Africa. We released six captive-bred African Grass-Owls Tyto capensis into suitable habitat and, using radio telemetry, determined their daytime roost sites. One bird left the study area soon after release and did not yield data.

  13. Detecting West Nile Virus in Owls and Raptors by an Antigen-capture Assay

    OpenAIRE

    Gancz, Ady Y.; Campbell, Douglas G.; Barker, Ian K.; Lindsay, Robbin; Hunter, Bruce

    2004-01-01

    We evaluated a rapid antigen-capture assay (VecTest) for detection of West Nile virus in oropharyngeal and cloacal swabs, collected at necropsy from owls (N = 93) and raptors (N = 27). Sensitivity was 93.5%–95.2% for northern owl species but

  14. "Not in the Middle Ages"?: Alan Garner's "The Owl Service" and the Literature of Adolescence.

    Science.gov (United States)

    Hardwick, Paul

    2000-01-01

    Discusses connecting with the Middle Ages in adolescent fiction. Discusses how, in "The Owl Service," Garner addresses a relationship between adolescence in the late twentieth century and an aspect of the past--specifically the Middle Ages. Considers how "The Owl Service" is a story energized by myth, concerning the…

  15. A comprehensive review of non-enterica subspecies of Salmonella enterica.

    Science.gov (United States)

    Lamas, Alexandre; Miranda, José Manuel; Regal, Patricia; Vázquez, Beatriz; Franco, Carlos Manuel; Cepeda, Alberto

    2018-01-01

    Salmonella is a major foodborne pathogen with a complex nomenclature. This genus is composed of two species, S. enterica and S. bongori. S. enterica is divided into six subspecies. S. enterica subspecies enterica is composed of more than 1500 serotypes with some of great importance, such as S. Typhimurium and S. Enteritidis. S. enterica subsp. enterica is responsible of more than 99% of human salmonellosis and therefore it is widely studied. However, the non-enterica subspecies of S. enterica have been little studied. These subspecies are considered to be related to cold-blooded animals and their pathogenicity is very limited. Phenotype and genotype information generated from different studies of non-enterica subspecies reveal poor ability to invade host cells and the absence or modification of important virulence factors. Also, the great majority of human infections due to non-enterica subspecies are related to a previous depressed immune system. Therefore, we propose to treat these subspecies only as opportunistic pathogens. For establish this premise, the present review evaluated, among other things, the genomic characteristics, prevalence, antimicrobial resistance and reported human cases of the non-enterica subspecies. Copyright © 2017 Elsevier GmbH. All rights reserved.

  16. 77 FR 73769 - Endangered and Threatened Wildlife and Plants; Listing Four Subspecies of Mazama Pocket Gopher...

    Science.gov (United States)

    2012-12-11

    ... genetic data and morphological features. The candidate status for the nine Washington subspecies of Mazama... time) genetic data and morphological features and based on the presumption that this subspecies was a... natural or manmade factors, including low genetic diversity, small or isolated populations, low...

  17. Spot market for uranium

    International Nuclear Information System (INIS)

    Colhoun, C.

    1982-01-01

    The spot market is always quoted for the price of uranium because little information is available about long-term contracts. A review of the development of spot market prices shows the same price curve swings that occur with all raw materials. Future long-term contracts will probably be lower to reflect spot market prices, which are currently in the real-value range of $30-$35. An upswing in the price of uranium could come in the next few months as utilities begin making purchases and trading from stockpiles. The US, unlike Europe and Japan, has already reached a supply and demand point where the spot market share is increasing. Forecasters cannot project the market price, they can only predict the presence of an oscillating spot or a secondary market. 5 figures

  18. The influence of hunger on meal to pellet intervals in barred owls

    Science.gov (United States)

    Duke, G.E.; Fuller, M.R.; Huberty, B.J.

    1980-01-01

    1. Barred owls fed at a sub-maintenance (SM) level had significantly (P < 0.01) longer meal to pellet intervals (MPI)/g eaten/kg body weight (BW) than those fed at an above maintenance (AM) level; MPI/g per kg for owls fed at a maintenance (M) level was intermediate but significantly (P < 0.01) different from both SM and AM.2. During SM feeding, MPI/g per kg gradually increased.3. The proportion of a meal occurring in a pellet was less in “hungry” owls whether losing weight (SM) or gaining (AM) as compared to owls maintaining their normal body weight (M).4. SM fed owls appear to be able to increase digestion time as well as thoroughness of digestion.

  19. Structure and phylogeography of two tropical predators, spinner (Stenella longirostris) and pantropical spotted (S. attenuata) dolphins, from SNP data

    Science.gov (United States)

    Morin, Phillip A.

    2018-01-01

    Little is known about global patterns of genetic connectivity in pelagic dolphins, including how circumtropical pelagic dolphins spread globally following the rapid and recent radiation of the subfamily delphininae. In this study, we tested phylogeographic hypotheses for two circumtropical species, the spinner dolphin (Stenella longirostris) and the pantropical spotted dolphin (Stenella attenuata), using more than 3000 nuclear DNA single nucleotide polymorphisms (SNPs) in each species. Analyses for population structure indicated significant genetic differentiation between almost all subspecies and populations in both species. Bayesian phylogeographic analyses of spinner dolphins showed deep divergence between Indo-Pacific, Atlantic and eastern tropical Pacific Ocean (ETP) lineages. Despite high morphological variation, our results show very close relationships between endemic ETP spinner subspecies in relation to global diversity. The dwarf spinner dolphin is a monophyletic subspecies nested within a major clade of pantropical spinner dolphins from the Indian and western Pacific Ocean populations. Population-level division among the dwarf spinner dolphins was detected—with the northern Australia population being very different from that in Indonesia. In contrast to spinner dolphins, the major boundary for spotted dolphins is between offshore and coastal habitats in the ETP, supporting the current subspecies-level taxonomy. Comparing these species underscores the different scale at which population structure can arise, even in species that are similar in habitat (i.e. pelagic) and distribution. PMID:29765639

  20. Selective predation of tawny owls (Strix aluco) on yellow-necked mice (Apodemus flavicollis) and bank voles (Myodes glareolus)

    DEFF Research Database (Denmark)

    Sunde, Peter; Forsom, Heidi Malene; Al-Sabi, Mohammad Nafi Solaiman

    2012-01-01

    years by comparing prey from owl nests with live-trapped individuals. The owls killed significantly more male M.g. (73%) than females, but not more than expected from traps (57%). For A.f., owls selected adults in favour of subadults, and for adults, individuals with longer femurs. Adult males of A.......f. killed by owls had significantly heavier testes in relation their size than the trapped males. Prey selection did not correlate with size-adjusted body or spleen mass. Owl-killed A.f. had higher prevalences of the intestinal helminth Heligmosomoides sp. than trapped individuals, but hosted similar...

  1. Genome-wide sequence variations among Mycobacterium avium subspecies paratuberculosis.

    Directory of Open Access Journals (Sweden)

    Chung-Yi eHsu

    2011-12-01

    Full Text Available Mycobacterium avium subspecies paratuberculosis (M. ap, the causative agent of Johne’s disease (JD, infects many farmed ruminants, wildlife animals and humans. To better understand the molecular pathogenesis of these infections, we analyzed the whole genome sequences of several M. ap and M. avium subspecies avium (M. avium strains isolated from various hosts and environments. Using Next-generation sequencing technology, all 6 M. ap isolates showed a high percentage of homology (98% to the reference genome sequence of M. ap K-10 isolated from cattle. However, 2 M. avium isolates (DT 78 and Env 77 showed significant sequence diversity from the reference strain M. avium 104. The genomes of M. avium isolates DT 78 and Env 77 exhibited only 87% and 40% homology, respectively, to the M. avium 104 reference genome. Within the M. ap isolates, genomic rearrangements (insertions/deletions, Indels were not detected, and only unique single nucleotide polymorphisms (SNPs were observed among the 6 M. ap strains. While most of the SNPs (~100 in M. ap genomes were non-synonymous, a total of ~ 6000 SNPs were detected among M. avium genomes, most of them were synonymous suggesting a differential selective pressure between M. ap and M. avium isolates. In addition, SNPs-based phylo-genomic analysis showed that isolates from goat and Oryx are closely related to the cattle (K-10 strain while the human isolate (M. ap 4B is closely related to the environmental strains, indicating environmental source to human infections. Overall, SNPs were the most common variations among M. ap isolates while SNPs in addition to Indels were prevalent among M. avium isolates. Genomic variations will be useful in designing host-specific markers for the analysis of mycobacterial evolution and for developing novel diagnostics directed against Johne’s disease in animals.

  2. Hyper-functioning Thyroid Nodule with Scintigraphic Owl's Eye Appearance

    International Nuclear Information System (INIS)

    Al-Kordi, R.S.; Elgazzar, A.H.

    2006-01-01

    Hyper-functioning thyroid nodules may produce various scintigraphic appearances on thyroid scans. Autonomously hyper functioning thyroid nodules invariably demonstrate degenerative changes. These changes may give rise to central or less commonly peripheral photopenic areas on a thyroid scan within otherwise a hot nodule. In this report we present a case of hyper functioning autonomous nodule with peripheral degeneration and residual central functioning tissue giving the appearance of an owl's eye. Although rare, this pattern can be seen in a variety of benign and malignant thyroid conditions. (author)

  3. Mononucleosis spot test

    Science.gov (United States)

    Monospot test; Heterophile antibody test; Heterophile agglutination test; Paul-Bunnell test; Forssman antibody test ... The mononucleosis spot test is done when symptoms of mononucleosis are ... Fatigue Fever Large spleen (possibly) Sore throat Tender ...

  4. Arc cathode spots

    International Nuclear Information System (INIS)

    Schrade, H.O.

    1989-01-01

    Arc spots are usually highly unstable and jump statistically over the cathode surface. In a magnetic field parallel to the surface, preferably they move in the retrograde direction; i.e., opposite to the Lorentzian rule. If the field is inclined with respect to the surface, the spots drift away at a certain angle with respect to the proper retrograde direction (Robson drift motion). These well-known phenomena are explained by one stability theory

  5. Experimental studies of adaptation in Clarkia xantiana. III. Phenotypic selection across a subspecies border.

    Science.gov (United States)

    Anderson, Jill T; Eckhart, Vincent M; Geber, Monica A

    2015-09-01

    Sister taxa with distinct phenotypes often occupy contrasting environments in parapatric ranges, yet we generally do not know whether trait divergence reflects spatially varying selection. We conducted a reciprocal transplant experiment to test whether selection favors "native phenotypes" in two subspecies of Clarkia xantiana (Onagraceae), an annual plant in California. For four quantitative traits that differ between subspecies, we estimated phenotypic selection in subspecies' exclusive ranges and their contact zone in two consecutive years. We predicted that in the arid, pollinator-scarce eastern region, selection favors phenotypes of the native subspecies parviflora: small leaves, slow leaf growth, early flowering, and diminutive flowers. In the wetter, pollinator-rich, western range of subspecies xantiana, we expected selection for opposite phenotypes. We investigated pollinator contributions to selection by comparing naturally pollinated and pollen-supplemented individuals. For reproductive traits and for subspecies xantiana, selection generally matched expectations. The contact zone sometimes showed distinctive selection, and in ssp. parviflora selection sometimes favored nonnative phenotypes. Pollinators influenced selection on flowering time but not on flower size. Little temporal variation in selection occurred, possibly because of plastic trait responses across years. Though there were exceptions and some causes of selection remain obscure, phenotypic differentiation between subspecies appears to reflect spatially variable selection. © 2015 The Author(s). Evolution © 2015 The Society for the Study of Evolution.

  6. A Molecular Method for the Identification of Honey Bee Subspecies Used by Beekeepers in Russia

    Science.gov (United States)

    Syromyatnikov, Mikhail Y.; Borodachev, Anatoly V.; Kokina, Anastasia V.; Popov, Vasily N.

    2018-01-01

    Apis mellifera L. includes several recognized subspecies that differ in their biological properties and agricultural characteristics. Distinguishing between honey bee subspecies is complicated. We analyzed the Folmer region of the COX1 gene in honey bee subspecies cultivated at bee farms in Russia and identified subspecies-specific SNPs. DNA analysis revealed two clearly distinct haplogroups in A. mellifera mellifera. The first one was characterized by multiple cytosine-thymine (thymine–cytosine) transitions, one adenine-guanine substitution, and one thymine–adenine substitution. The nucleotide sequence of the second haplogroup coincided with sequences from other subspecies, except the unique C/A SNP at position 421 of the 658-bp Folmer region. A. mellifera carnica and A. mellifera carpatica could be distinguished from A. mellifera mellifera and A. mellifera caucasica by the presence of the A/G SNP at position 99 of the 658-bp Folmer region. The G/A SNP at position 448 was typical for A. mellifera carnica. A. mellifera caucasica COX1 sequence lacked all the above-mentioned sites. We developed a procedure for rapid identification of honey bee subspecies by PCR with restriction fragment length polymorphism (RFLP) using mutagenic primers. The developed molecular method for honey bee subspecies identification is fast and inexpensive. PMID:29382048

  7. Effects of radiotransmitter necklaces on behaviors of adult male western burrowing owls

    Science.gov (United States)

    Chipman, E.D.; McIntyre, N.E.; Ray, J.D.; Wallace, M.C.; Boal, C.W.

    2007-01-01

    We studied the behavioral effects of necklace-style radiotransmitters on breeding male western burrowing owls (Athene cunicularia hypugaea) in 2 areas of northwestern Texas, USA, in 2004 and 2005. We tested the hypothesis that transmittered owls would spend time interacting with their necklaces and as a result spend less time in vigilance and resting activities than would nontransmittered owls. Nontransmittered owls (n = 6) spent significantly more time being vigilant (P = 0.007) than did transmittered owls (n = 3) in 2004, who spent significant amounts of time interacting with their necklaces. In 2005, behaviors of transmittered owls (n = 8) were significantly different (P < 0.001) from control individuals (n = 4), but behaviors did not vary consistently by treatment period (prenecklace vs. necklace vs. postnecklace periods). Behavioral activity budgets varied considerably among individuals. Although the owls spent a significant amount of time interacting with their necklaces, they appeared to habituate to the presence of the transmitters within a relatively short period (<1 week), and necklaces did not affect survivorship or fitness in the short-term.

  8. Exploiting Semantic Web Technologies to Develop OWL-Based Clinical Practice Guideline Execution Engines.

    Science.gov (United States)

    Jafarpour, Borna; Abidi, Samina Raza; Abidi, Syed Sibte Raza

    2016-01-01

    Computerizing paper-based CPG and then executing them can provide evidence-informed decision support to physicians at the point of care. Semantic web technologies especially web ontology language (OWL) ontologies have been profusely used to represent computerized CPG. Using semantic web reasoning capabilities to execute OWL-based computerized CPG unties them from a specific custom-built CPG execution engine and increases their shareability as any OWL reasoner and triple store can be utilized for CPG execution. However, existing semantic web reasoning-based CPG execution engines suffer from lack of ability to execute CPG with high levels of expressivity, high cognitive load of computerization of paper-based CPG and updating their computerized versions. In order to address these limitations, we have developed three CPG execution engines based on OWL 1 DL, OWL 2 DL and OWL 2 DL + semantic web rule language (SWRL). OWL 1 DL serves as the base execution engine capable of executing a wide range of CPG constructs, however for executing highly complex CPG the OWL 2 DL and OWL 2 DL + SWRL offer additional executional capabilities. We evaluated the technical performance and medical correctness of our execution engines using a range of CPG. Technical evaluations show the efficiency of our CPG execution engines in terms of CPU time and validity of the generated recommendation in comparison to existing CPG execution engines. Medical evaluations by domain experts show the validity of the CPG-mediated therapy plans in terms of relevance, safety, and ordering for a wide range of patient scenarios.

  9. Morphometric and molecular differentiation between quetzal subspecies of Pharomachrus mocinno (Trogoniformes: Trogonidae).

    Science.gov (United States)

    Solórzano, Sofía; Oyama, Ken

    2010-03-01

    The resplendent Quetzal (Pharomachrus mocinno) is an endemic Mesoamerican bird species of conservation concern. Within this species, the subspecies P. m. costaricensis and P. m. mocinno, have been recognized by apparent morphometric differences; however, presently there is no sufficient data for confirmation. We analyzed eight morphometric attributes of the body from 41 quetzals: body length, tarsus and cord wing, as well as the length, wide and depth of the bill, body weight; and in the case of the males, the length of the long upper-tail cover feathers. We used multivariate analyses to discriminate morphometric differences between subspecies and contrasted each morphometric attribute between and within subspecies with paired non-parametric Wilcoxon test. In order to review the intraspecific taxonomic status of this bird, we added phylogenetic analysis, and genetic divergence and differentiation based on nucleotide variations in four sequences of mtDNA. The nucleotide variation was estimated in control region, subunit NDH6, and tRNAGlu and tRNAPhe in 26 quetzals from eight localities distributed in five countries. We estimated the genetic divergence and differentiation between subspecies according to a mutation-drift equilibrium model. We obtained the best mutation nucleotide model following the procedure implemented in model test program. We constructed the phylogenetic relationships between subspecies by maximum parsimony and maximum likelihood using PAUP, as well as with Bayesian statistics. The multivariate analyses showed two different morphometric groups, and individuals clustered according to the subspecies that they belong. The paired comparisons between subspecies showed strong differences in most of the attributes analyzed. Along the four mtDNA sequences, we identified 32 nucleotide positions that have a particular nucleotide according to the quetzals subspecies. The genetic divergence and the differentiation was strong and markedly showed two groups

  10. The evolutionary turnover of recombination hot spots contributes to speciation in mice.

    Science.gov (United States)

    Smagulova, Fatima; Brick, Kevin; Pu, Yongmei; Camerini-Otero, R Daniel; Petukhova, Galina V

    2016-02-01

    Meiotic recombination is required for the segregation of homologous chromosomes and is essential for fertility. In most mammals, the DNA double-strand breaks (DSBs) that initiate meiotic recombination are directed to a subset of genomic loci (hot spots) by sequence-specific binding of the PRDM9 protein. Rapid evolution of the DNA-binding specificity of PRDM9 and gradual erosion of PRDM9-binding sites by gene conversion will alter the recombination landscape over time. To better understand the evolutionary turnover of recombination hot spots and its consequences, we mapped DSB hot spots in four major subspecies of Mus musculus with different Prdm9 alleles and in their F1 hybrids. We found that hot spot erosion governs the preferential usage of some Prdm9 alleles over others in hybrid mice and increases sequence diversity specifically at hot spots that become active in the hybrids. As crossovers are disfavored at such hot spots, we propose that sequence divergence generated by hot spot turnover may create an impediment for recombination in hybrids, potentially leading to reduced fertility and, eventually, speciation. Published by Cold Spring Harbor Laboratory Press.

  11. OWL Reasoning Framework over Big Biological Knowledge Network

    Science.gov (United States)

    Chen, Huajun; Chen, Xi; Gu, Peiqin; Wu, Zhaohui; Yu, Tong

    2014-01-01

    Recently, huge amounts of data are generated in the domain of biology. Embedded with domain knowledge from different disciplines, the isolated biological resources are implicitly connected. Thus it has shaped a big network of versatile biological knowledge. Faced with such massive, disparate, and interlinked biological data, providing an efficient way to model, integrate, and analyze the big biological network becomes a challenge. In this paper, we present a general OWL (web ontology language) reasoning framework to study the implicit relationships among biological entities. A comprehensive biological ontology across traditional Chinese medicine (TCM) and western medicine (WM) is used to create a conceptual model for the biological network. Then corresponding biological data is integrated into a biological knowledge network as the data model. Based on the conceptual model and data model, a scalable OWL reasoning method is utilized to infer the potential associations between biological entities from the biological network. In our experiment, we focus on the association discovery between TCM and WM. The derived associations are quite useful for biologists to promote the development of novel drugs and TCM modernization. The experimental results show that the system achieves high efficiency, accuracy, scalability, and effectivity. PMID:24877076

  12. Optimal Prediction of Moving Sound Source Direction in the Owl.

    Directory of Open Access Journals (Sweden)

    Weston Cox

    2015-07-01

    Full Text Available Capturing nature's statistical structure in behavioral responses is at the core of the ability to function adaptively in the environment. Bayesian statistical inference describes how sensory and prior information can be combined optimally to guide behavior. An outstanding open question of how neural coding supports Bayesian inference includes how sensory cues are optimally integrated over time. Here we address what neural response properties allow a neural system to perform Bayesian prediction, i.e., predicting where a source will be in the near future given sensory information and prior assumptions. The work here shows that the population vector decoder will perform Bayesian prediction when the receptive fields of the neurons encode the target dynamics with shifting receptive fields. We test the model using the system that underlies sound localization in barn owls. Neurons in the owl's midbrain show shifting receptive fields for moving sources that are consistent with the predictions of the model. We predict that neural populations can be specialized to represent the statistics of dynamic stimuli to allow for a vector read-out of Bayes-optimal predictions.

  13. Spatial behaviour of little owls (Athene noctua) in a declining low-density population in Denmark

    DEFF Research Database (Denmark)

    Sunde, Peter; Thorup, Kasper; Jacobsen, Lars Bo

    2009-01-01

    Knowledge of a species' spatial behaviour is essential for understanding its behavioural ecology and a prerequisite to planning of conservation strategies. The little owl has shown a substantial decline in North-western Europe and is on the road of extinction in Denmark. To quantify relevant...... aspects of spatial behaviour in the last remaining Danish population, we followed 27 radio-tagged owls representing 14 territories during a period of 2 years. Mated owls were resident at nesting sites year-round with half of all nocturnal locations found within 125 m. Nightly distance from roosts peaked...

  14. Mercury in Nelson's Sparrow subspecies at breeding sites.

    Directory of Open Access Journals (Sweden)

    Virginia L Winder

    Full Text Available BACKGROUND: Mercury is a persistent, biomagnifying contaminant that can cause negative effects on ecosystems. Marshes are often areas of relatively high mercury methylation and bioaccumulation. Nelson's Sparrows (Ammodramus nelsoni use marsh habitats year-round and have been documented to exhibit tissue mercury concentrations that exceed negative effects thresholds. We sought to further characterize the potential risk of Nelson's Sparrows to mercury exposure by sampling individuals from sites within the range of each of its subspecies. METHODOLOGY/PRINCIPAL FINDINGS: From 2009 to 2011, we captured adult Nelson's Sparrows at sites within the breeding range of each subspecies (A. n. nelsoni: Grand Forks and Upham, North Dakota; A. n. alterus: Moosonee, Ontario; and A. n. subvirgatus: Grand Manan Island, New Brunswick and sampled breast feathers, the first primary feather (P1, and blood for total mercury analysis. Mean blood mercury in nelsoni individuals captured near Grand Forks ranged from 0.84 ± 0.37 to 1.65 ± 1.02 SD ppm among years, between 2.0 and 4.9 times as high as concentrations at the other sites (P<0.01. Breast feather mercury did not vary among sites within a given sampling year (site means ranged from 0.98 ± 0.69 to 2.71 ± 2.93 ppm. Mean P1 mercury in alterus (2.96 ± 1.84 ppm fw was significantly lower than in any other sampled population (5.25 ± 2.24-6.77 ± 3.51 ppm; P ≤ 0.03. CONCLUSIONS/SIGNIFICANCE: Our study further characterized mercury in Nelson's Sparrows near Grand Forks; we documented localized and potentially harmful mercury concentrations, indicating that this area may represent a biological mercury hotspot. This finding warrants further research to determine if wildlife populations of conservation or recreational interest in this area may be experiencing negative effects due to mercury exposure. We present preliminary conclusions about the risk of each sampled population to mercury exposure.

  15. Mercury in Nelson's Sparrow Subspecies at Breeding Sites

    Science.gov (United States)

    Winder, Virginia L.; Emslie, Steven D.

    2012-01-01

    Background Mercury is a persistent, biomagnifying contaminant that can cause negative effects on ecosystems. Marshes are often areas of relatively high mercury methylation and bioaccumulation. Nelson's Sparrows (Ammodramus nelsoni) use marsh habitats year-round and have been documented to exhibit tissue mercury concentrations that exceed negative effects thresholds. We sought to further characterize the potential risk of Nelson's Sparrows to mercury exposure by sampling individuals from sites within the range of each of its subspecies. Methodology/Principal Findings From 2009 to 2011, we captured adult Nelson's Sparrows at sites within the breeding range of each subspecies (A. n. nelsoni: Grand Forks and Upham, North Dakota; A. n. alterus: Moosonee, Ontario; and A. n. subvirgatus: Grand Manan Island, New Brunswick) and sampled breast feathers, the first primary feather (P1), and blood for total mercury analysis. Mean blood mercury in nelsoni individuals captured near Grand Forks ranged from 0.84±0.37 to 1.65±1.02 SD ppm among years, between 2.0 and 4.9 times as high as concentrations at the other sites (Pmercury did not vary among sites within a given sampling year (site means ranged from 0.98±0.69 to 2.71±2.93 ppm). Mean P1 mercury in alterus (2.96±1.84 ppm fw) was significantly lower than in any other sampled population (5.25±2.24–6.77±3.51 ppm; P≤0.03). Conclusions/Significance Our study further characterized mercury in Nelson's Sparrows near Grand Forks; we documented localized and potentially harmful mercury concentrations, indicating that this area may represent a biological mercury hotspot. This finding warrants further research to determine if wildlife populations of conservation or recreational interest in this area may be experiencing negative effects due to mercury exposure. We present preliminary conclusions about the risk of each sampled population to mercury exposure. PMID:22384194

  16. Susceptibility of Staphylococcus species and subspecies to teicoplanin.

    Science.gov (United States)

    Bannerman, T L; Wadiak, D L; Kloos, W E

    1991-01-01

    Twenty-four Staphylococcus species and their subspecies were examined for their susceptibilities to teicoplanin by disk diffusion (30-micrograms disk) and agar dilution for the determination of MICs. Moderately susceptible and resistant clinical strains were further tested for their susceptibilities to oxacillin and vancomycin. Teicoplanin resistance was not observed in the reference strains of the various Staphylococcus species isolated from healthy volunteers or animals. However, the novobiocin-resistant species Staphylococcus saprophyticus, Staphylococcus cohnii, Staphylococcus xylosus, Staphylococcus arlettae, Staphylococcus kloosii, and Staphylococcus gallinarum were less susceptible to teicoplanin (MIC, 2 to 8 micrograms/ml) than most of the novobiocin-susceptible species were (MIC, 0.5 to 4 micrograms/ml). Clinical isolates of coagulase-negative species were generally less susceptible to teicoplanin than were reference strains. Seven percent of the Staphylococcus epidermidis clinical strains were moderately susceptible (MIC, 16 micrograms/ml) to teicoplanin. Of these strains, 70% were oxacillin resistant. For Staphylococcus haemolyticus strains, 11% were resistant (MIC, greater than 16 micrograms/ml) and 21% were moderately susceptible to teicoplanin. Of these strains, 95% were oxacillin resistant, No strains of S. epidermidis or S. haemolyticus were intermediate or resistant to vancomycin. Teicoplanin appears to be less active in vitro against oxacillin-resistant S. haemolyticus. However, teicoplanin is an effective antimicrobial agent against many Staphylococcus species. PMID:1835340

  17. Susceptibility of Staphylococcus species and subspecies to fleroxacin.

    Science.gov (United States)

    Bannerman, T L; Wadiak, D L; Kloos, W E

    1991-01-01

    Twenty-four Staphylococcus species or subspecies were examined for their susceptibilities to the fluoroquinolone fleroxacin (Ro 23-6240) by disk diffusion (5-micrograms disk) and by agar dilution for the determination of MICs. Resistant strains were further tested for their susceptibilities to oxacillin and the fluoroquinolone ciprofloxacin. Reference strains of the novobiocin-resistant species (Staphylococcus saprophyticus, Staphylococcus cohnii, Staphylococcus xylosus, Staphylococcus arlettae, and Staphylococcus gallinarum) had an intrinsic intermediate susceptibility (MIC, 4 micrograms/ml) to fleroxacin. Fleroxacin resistance was not observed in the reference strains of the novobiocin-susceptible species (MIC, 0.5 to 2.0 micrograms/ml). Clinical isolates of coagulase-negative species were generally less susceptible to fleroxacin than were reference strains. Seven percent of the Staphylococcus epidermidis clinical strains were resistant (MIC, greater than or equal to 8 micrograms/ml) to fleroxacin. Of these strains, 77% were resistant to oxacillin and 50% were resistant to ciprofloxacin. Thirty-four percent of the Staphylococcus haemolyticus clinical strains were resistant to fleroxacin, and 9% had intermediate susceptibility. Of the resistant strains, 95% were resistant to oxacillin and 77% were resistant to ciprofloxacin, while 23% had intermediate susceptibility to ciprofloxacin. Fleroxacin is an effective antimicrobial agent against most staphylococci. PMID:1759838

  18. Burial increases seed longevity of two Artemisia tridentata (Asteraceae) subspecies

    Science.gov (United States)

    Wijayratne, Upekala C.; Pyke, David A.

    2012-01-01

    Premise of the study: Seed longevity and persistence in soil seed banks may be especially important for population persistence in ecosystems where opportunities for seedling establishment and disturbance are unpredictable. The fire regime, an important driver of population dynamics in sagebrush steppe ecosystems, has been altered by exotic annual grass invasion. Soil seed banks may play an active role in postfire recovery of the foundation shrub Artemisia tridentata, yet conditions under which seeds persist are largely unknown. Methods: We investigated seed longevity of two Artemisia tridentata subspecies in situ by retrieving seed bags that were placed at varying depths over a 2 yr period. We also sampled naturally dispersed seeds in litter and soil immediately after seed dispersal and before flowering in subsequent seasons to estimate seed persistence. Key results: After 24 mo, seeds buried at least 3 cm below the soil surface retained 30–40% viability whereas viability of seeds on the surface and under litter declined to 0 and Artemisia tridentata has the potential to form a short-term soil seed bank that persists longer than has been commonly assumed, and that burial is necessary for seed longevity. Use of seeding techniques that promote burial of some seeds to aid in formation of a soil seed bank may increase restoration potential.

  19. SALMONELLA ENTERICA SUBSPECIES ENTERICA SEROVAR ENTERITIDIS – ACTUALITIES AND IMPORTANCE

    Directory of Open Access Journals (Sweden)

    Predrag Stojanović

    2010-09-01

    Full Text Available Salmonella enterica subspecies enterica serovar Enteritidis (S. Enteritidis has been recently recognized as a prevalent cause of alimentary toxi-infection worldwide. Its widespread presence could be explained by intensification and globalization of traffic, global trade, and the rest of socioeconomic processes. However, no matter to global spreading of S. Enteritidis, there is unequal distribution of certain phage types (PT where PT 4 and 8 are predominant. Salmonella is considered as a cause of various diseases from acute enterocolitis to typhoid fever. All bacteria from this species have numerous virulence factors such as: adhesins, toxins, virulence plasmids, and cell wall lipopolysaccharides (LPS. Similar to other salmonella serotypes, S. Enteritidis has a virulence plasmid. It allows a bacterium to persist inside the reticuloendothelial cells, while strains without it are eliminated quickly. In the last few years several virulent S. Enteritidis strains of PT 4 were described and considered to be of the same origin. The domination of PT 4 is probably subjected to the resistance of certain strains to nitrofurantoin which is used in poultry rising. The increased significance of S. Enteritidis refers not only to its association with pandemic problems but to frequent reports about extraintestinal infectious processes caused by this bacterium. Taking into consideration that eggs are very important source of infection besides poultry meat, the advised efficient preventive measures, among others, should be some changes in poultry meat preparation, investigation of outbreak-related flocks and devastation of infected ones, as well as egg pasteurization.

  20. A molecular marker distinguishes the subspecies Melipona quadrifasciata quadrifasciata and Melipona quadrifasciata anthidioides (Hymenoptera: Apidae, Meliponinae)

    OpenAIRE

    Ana M. Waldschmidt; Everaldo G. de Barros; Lucio A.O. Campos

    2000-01-01

    The stingless bee species Melipona quadrifasciata includes two subspecies, Melipona quadrifasciata anthidioids and Melipona quadrifasciata quadrifasciata. The morphological difference between the two subspecies is the presence of three to five continuous yellow stripes on the terga on the 3rd to 6th segments in workers and males of M. q. quadrifasciata, and two to five interrupted bands in M. q. anthidioides. We identified a DNA marker which is present in M. q. quadrifasciata and absent in M....

  1. A novel multi-antigen virally vectored vaccine against Mycobacterium avium subspecies paratuberculosis.

    Science.gov (United States)

    Bull, Tim J; Gilbert, Sarah C; Sridhar, Saranya; Linedale, Richard; Dierkes, Nicola; Sidi-Boumedine, Karim; Hermon-Taylor, John

    2007-11-28

    Mycobacterium avium subspecies paratuberculosis causes systemic infection and chronic intestinal inflammation in many species including primates. Humans are exposed through milk and from sources of environmental contamination. Hitherto, the only vaccines available against Mycobacterium avium subspecies paratuberculosis have been limited to veterinary use and comprised attenuated or killed organisms. We developed a vaccine comprising a fusion construct designated HAV, containing components of two secreted and two cell surface Mycobacterium avium subspecies paratuberculosis proteins. HAV was transformed into DNA, human Adenovirus 5 (Ad5) and Modified Vaccinia Ankara (MVA) delivery vectors. Full length expression of the predicted 95 kDa fusion protein was confirmed. Vaccination of naïve and Mycobacterium avium subspecies paratuberculosis infected C57BL/6 mice using DNA-prime/MVA-boost or Ad5-prime/MVA-boost protocols was highly immunogenic resulting in significant IFN-gamma ELISPOT responses by splenocytes against recombinant vaccine antigens and a range of HAV specific peptides. This included strong recognition of a T-cell epitope GFAEINPIA located near the C-terminus of the fusion protein. Antibody responses to recombinant vaccine antigens and HAV specific peptides but not GFAEINPIA, also occurred. No immune recognition of vaccine antigens occurred in any sham vaccinated Mycobacterium avium subspecies paratuberculosis infected mice. Vaccination using either protocol significantly attenuated pre-existing Mycobacterium avium subspecies paratuberculosis infection measured by qPCR in spleen and liver and the Ad5-prime/MVA-boost protocol also conferred some protection against subsequent challenge. No adverse effects of vaccination occurred in any of the mice. A range of modern veterinary and clinical vaccines for the treatment and prevention of disease caused by Mycobacterium avium subspecies paratuberculosis are needed. The present vaccine proved to be highly

  2. Influence of vegetation on the nocturnal foraging behaviors and vertebrate prey capture by endangered Burrowing Owls

    Directory of Open Access Journals (Sweden)

    Alan Marsh

    2014-06-01

    Full Text Available Restrictions in technology have limited past habitat selection studies for many species to the home-range level, as a finer-scale understanding was often not possible. Consequently, these studies may not identify the true mechanism driving habitat selection patterns, which may influence how such results are applied in conservation. We used GPS dataloggers with digital video recorders to identify foraging modes and locations in which endangered Burrowing Owls (Athene cunicularia captured prey. We measured the coarse and fine-scale characteristics of vegetation at locations in which owls searched for, versus where they caught, vertebrate prey. Most prey items were caught using hover-hunting. Burrowing Owls searched for, and caught, vertebrate prey in all cover types, but were more likely to kill prey in areas with sparse and less dense vegetative cover. Management strategies designed to increase Burrowing Owl foraging success in the Canadian prairies should try to ensure a mosaic of vegetation heights across cover types.

  3. Exposure affects the risk of an owl being mobbed - experimental evidence

    DEFF Research Database (Denmark)

    Hendrichsen, Ditte Katrine; Christiansen, Peter; Nielsen, Elsemarie K.

    2006-01-01

    Mobbing is a widespread anti-predator strategy in birds, and predators are generally expected to avoid mobbing. For example, observational studies suggest that the cryptic roosting behaviour of nocturnal predators, such as many owls, may be a strategy to limit mobbing. In this paper, we present...... the results of the first experimental study investigating to what degree roost exposure influences the risk of being mobbed, and the intensity of a mobbing incidence once initiated. To determine these factors, we used an experimental setup with taxidermic mounts of tawny owls Strix aluco in Grib Skov forest......, Denmark. The risk of an owl being mobbed during a 50 min morning survey period increased with the exposure of its roosting position, from 24% when hidden to 85% when openly exposed. The corresponding increase in the afternoon was from 6% to 36%. This suggests that an owl may minimize the mobbing rate...

  4. Breeding-season food habits of burrowing owls (Athene cunicularia) in southwestern Dominican Republic

    Science.gov (United States)

    Wiley, J.W.

    1998-01-01

    Diet data from 20 Burrowing Owl (Athene cunicularia) nests were collected in southwestern Dominican Republic in 1976, 1982, and 1996. Invertebrates (53.3%) comprised the most numerous prey items (N = 396) delivered to nests by adult owls, but vertebrates (46.7%) were much better represented than in other studies of Burrowing Owl diet. Among vertebrates, birds (28.3% of all items) and reptiles (14.9%) were most important, whereas mammals (1.0%) and amphibians (2.5%) were less commonly delivered to nests. Vertebrates, however, comprised more than twice (69.2%) of the total biomass as invertebrates (30.8%), with birds (50.4%) and reptiles (12.8%) the most important of the vertebrate prey classes. A positive relationship was observed between bird species abundance and number of individuals taken as prey by Burrowing Owls.

  5. Improvement of directionality and sound-localization by internal ear coupling in barn owls

    DEFF Research Database (Denmark)

    Wagner, Hermann; Christensen-Dalsgaard, Jakob; Kettler, Lutz

    Mark Konishi was one of the first to quantify sound-localization capabilities in barn owls. He showed that frequencies between 3 and 10 kHz underlie precise sound localization in these birds, and that they derive spatial information from processing interaural time and interaural level differences....... However, despite intensive research during the last 40 years it is still unclear whether and how internal ear coupling contributes to sound localization in the barn owl. Here we investigated ear directionality in anesthetized birds with the help of laser vibrometry. Care was taken that anesthesia...... time difference in the low-frequency range, barn owls hesitate to approach prey or turn their heads when only low-frequency auditory information is present in a stimulus they receive. Thus, the barn-owl's sound localization system seems to be adapted to work best in frequency ranges where interaural...

  6. On-line leak detection method for OWL-1 loop by ARX modeling using dewpoint signals

    International Nuclear Information System (INIS)

    Oguma, Ritsuo; Hayashi, Koji; Kitajima, Toshio.

    1981-01-01

    Model identification technique based on ARX (autoregressive model with exogenous variable) process was applied to dewpoint data recorded at OWL-1 (Oarai Water Loop No. 1) loop cubicle in JMTR (Japan Materials Testing Reactor) and the dynamical interrelationship between the supply and exhaust dewpoints in the ventilation system of the cubicle was empirically determined. It was shown that the information so derived on the dewpoint dynamics can assist to enhance the sensitivity of leak detection, if it was incorporated into a leak monitoring system for the OWL-1 loop. A simple digital filter incorporating the dewpoint dynamics was designed in an attempt to develop an efficient leak monitor for the OWL-1 loop. This filter was applied to the dewpoint data recordings during an abnormal leak that had occurred at the OWL-1 loop in the 43 rd cycle of JMTR operation, which demonstrated the effectiveness of the present method for leak detection at its early stage. (author)

  7. Molecular heterogeneity in major urinary proteins of Mus musculus subspecies: potential candidates involved in speciation

    Science.gov (United States)

    Hurst, Jane L.; Beynon, Robert J.; Armstrong, Stuart D.; Davidson, Amanda J.; Roberts, Sarah A.; Gómez-Baena, Guadalupe; Smadja, Carole M.; Ganem, Guila

    2017-01-01

    When hybridisation carries a cost, natural selection is predicted to favour evolution of traits that allow assortative mating (reinforcement). Incipient speciation between the two European house mouse subspecies, Mus musculus domesticus and M.m.musculus, sharing a hybrid zone, provides an opportunity to understand evolution of assortative mating at a molecular level. Mouse urine odours allow subspecific mate discrimination, with assortative preferences evident in the hybrid zone but not in allopatry. Here we assess the potential of MUPs (major urinary proteins) as candidates for signal divergence by comparing MUP expression in urine samples from the Danish hybrid zone border (contact) and from allopatric populations. Mass spectrometric characterisation identified novel MUPs in both subspecies involving mostly new combinations of amino acid changes previously observed in M.m.domesticus. The subspecies expressed distinct MUP signatures, with most MUPs expressed by only one subspecies. Expression of at least eight MUPs showed significant subspecies divergence both in allopatry and contact zone. Another seven MUPs showed divergence in expression between the subspecies only in the contact zone, consistent with divergence by reinforcement. These proteins are candidates for the semiochemical barrier to hybridisation, providing an opportunity to characterise the nature and evolution of a putative species recognition signal. PMID:28337988

  8. Phylogenetic and Diversity Analysis of Dactylis glomerata Subspecies Using SSR and IT-ISJ Markers.

    Science.gov (United States)

    Yan, Defei; Zhao, Xinxin; Cheng, Yajuan; Ma, Xiao; Huang, Linkai; Zhang, Xinquan

    2016-10-31

    The genus Dactylis , an important forage crop, has a wide geographical distribution in temperate regions. While this genus is thought to include a single species, Dactylis glomerata , this species encompasses many subspecies whose relationships have not been fully characterized. In this study, the genetic diversity and phylogenetic relationships of nine representative Dactylis subspecies were examined using SSR and IT-ISJ markers. In total, 21 pairs of SSR primers and 15 pairs of IT-ISJ primers were used to amplify 295 polymorphic bands with polymorphic rates of 100%. The average polymorphic information contents (PICs) of SSR and IT-ISJ markers were 0.909 and 0.780, respectively. The combined data of the two markers indicated a high level of genetic diversity among the nine D. glomerata subspecies, with a Nei's gene diversity index value of 0.283 and Shannon's diversity of 0.448. Preliminarily phylogenetic analysis results revealed that the 20 accessions could be divided into three groups (A, B, C). Furthermore, they could be divided into five clusters, which is similar to the structure analysis with K = 5. Phylogenetic placement in these three groups may be related to the distribution ranges and the climate types of the subspecies in each group. Group A contained eight accessions of four subspecies, originating from the west Mediterranean, while Group B contained seven accessions of three subspecies, originating from the east Mediterranean.

  9. Barred Owl Habitat and Prey: A Review and Synthesis of the Literature

    OpenAIRE

    Livezey, Kent B.

    2007-01-01

    Barred Owls (Strix varia) historically inhabited the forests of eastern North America. During the last century, they expanded their range to include forests throughout the southern provinces of Canada, southeastern Alaska, British Columbia, Washington, Oregon, and northern California. To date, there has been no synthesis of the varied habitats or prey used by Barred Owls in their expanded range. Here I review and synthesize studies concerning habitat (N  =  114) and prey (N  =  43) of Barred ...

  10. Importance of agricultural landscapes to nesting burrowing owls in the Northern Great Plains, USA

    Science.gov (United States)

    Restani, M.; Davies, J.M.; Newton, W.E.

    2008-01-01

    Anthropogenic habitat loss and fragmentation are the principle factors causing declines of grassland birds. Declines in burrowing owl (Athene cunicularia) populations have been extensive and have been linked to habitat loss, primarily the decline of black-tailed prairie dog (Cynomys ludovicianus) colonies. Development of habitat use models is a research priority and will aid conservation of owls inhabiting human-altered landscapes. From 2001 to 2004 we located 160 burrowing owl nests on prairie dog colonies on the Little Missouri National Grassland in North Dakota. We used multiple linear regression and Akaike's Information Criterion to estimate the relationship between cover type characteristics surrounding prairie dog colonies and (1) number of owl pairs per colony and (2) reproductive success. Models were developed for two spatial scales, within 600 m and 2,000 m radii of nests for cropland, crested wheatgrass (Agropyron cristatum), grassland, and prairie dog colonies. We also included number of patches as a metric of landscape fragmentation. Annually, fewer than 30% of prairie dog colonies were occupied by owls. None of the models at the 600 m scale explained variation in number of owl pairs or reproductive success. However, models at the 2,000 m scale did explain number of owl pairs and reproductive success. Models included cropland, crested wheatgrass, and prairie dog colonies. Grasslands were not included in any of the models and had low importance values, although percentage grassland surrounding colonies was high. Management that protects prairie dog colonies bordering cropland and crested wheatgrass should be implemented to maintain nesting habitat of burrowing owls. ?? 2008 Springer Science+Business Media B.V.

  11. Optical Waveguide Lightmode Spectroscopy (OWLS) as a Sensor for Thin Film and Quantum Dot Corrosion

    OpenAIRE

    Yu, Hao; Eggleston, Carrick M.; Chen, Jiajun; Wang, Wenyong; Dai, Qilin; Tang, Jinke

    2012-01-01

    Optical waveguide lightmode spectroscopy (OWLS) is usually applied as a biosensor system to the sorption-desorption of proteins to waveguide surfaces. Here, we show that OWLS can be used to monitor the quality of oxide thin film materials and of coatings of pulsed laser deposition synthesized CdSe quantum dots (QDs) intended for solar energy applications. In addition to changes in data treatment and experimental procedure, oxide- or QD-coated waveguide sensors must be synthesized. We synthesi...

  12. In-pile loop OWL-2 and irradiation tests done with it

    International Nuclear Information System (INIS)

    Suzuki, Shinobu; Ikeshima, Yoshiaki; Kawano, Masakatsu; Watanabe, Hiroyuki; Sato, Hitoshi; Tanaka, Isao

    1990-11-01

    The OWL-2 which was built in the JMTR as the biggest water loop in Japan has been operating for irradiation service since February 1972. The desired objective of the OWL-2, contributing to the development of various nuclear fuels and materials for the light water power reactor and to reactor engineering, has been so fully achieved that the OWL-2 is planned to be dismantled. After the dismantling, a loop, needed for the research and development of the breeding blanket for the fusion reactor, is going to be installed in place of the OWL-2 as a part of the JMTR Modification Program. This paper deals with the history of the OWL-2 with an emphasis on the technical affairs taken into consideration when designing the OWL-2, the irradiation tests, development of the turbine flowmeter, results of the surveillance test of the material of the in-reactor tube, the knowledge gained in the course of the investigation into the cause of transgranular stress corrosion cracking (TGSCC) which developed in the wall of the in-reactor tube, and countermeasures taken to prevent TGSCC from recurring. (author)

  13. Viscoelastic Characterization of Long-Eared Owl Flight Feather Shaft and the Damping Ability Analysis

    Directory of Open Access Journals (Sweden)

    Jia-li Gao

    2014-01-01

    Full Text Available Flight feather shaft of long-eared owl is characterized by a three-parameter model for linear viscoelastic solids to reveal its damping ability. Uniaxial tensile tests of the long-eared owl, pigeon, and golden eagle flight feather shaft specimens were carried out based on Instron 3345 single column material testing system, respectively, and viscoelastic response of their stress and strain was described by the standard linear solid model. Parameter fitting result obtained from the tensile tests shows that there is no significant difference in instantaneous elastic modulus for the three birds’ feather shafts, but the owl shaft has the highest viscosity, implying more obvious viscoelastic performance. Dynamic mechanical property was characterized based on the tensile testing results. Loss factor (tanδ of the owl flight feather shaft was calculated to be 1.609 ± 0.238, far greater than those of the pigeon (0.896 ± 0.082 and golden eagle (1.087 ± 0.074. It is concluded that the long-eared owl flight feather has more outstanding damping ability compared to the pigeon and golden eagle flight feather shaft. Consequently, the long-eared owl flight feathers can dissipate the vibration energy more effectively during the flying process based on the principle of damping mechanism, for the purpose of vibration attenuation and structure radiated noise reduction.

  14. Occurrence of the saw-whet owl in Florida

    Science.gov (United States)

    Lesser, F.H.; Stickley, A.R.

    1967-01-01

    On 31 October 1965 at 1000 hours we observed and collected a Saw-whet Owl (Aegolius acadicus) in adult plumage and in apparently good physical condition at Ponte Vedra, St. Johns County, Florida. The bird flew from beneath a truck to a cross beam in a garage adjoining a large, fresh-water, wooded swamp dominated by cabbage palms (Sabal palmetto). We found a regurgitated pellet and a freshly killed, partially eaten cotton mouse (Peromyscus gossypinus) beneath the truck. The bird was sent to Henry M. Stevenson for deposit in Florida State University Museum, Tallahassee (specimen no. 4092b). Dr. Stevenson found that the skull had been shattered and the gonads destroyed in collecting. Total length (before skinning) was 210 mm.

  15. Dyscoria associated with herpesvirus infection in owl monkeys (Aotus nancymae)

    Energy Technology Data Exchange (ETDEWEB)

    Gozalo, Alfonso S.; Montoya, Enrique J.; Weller, Richard E.

    2008-08-16

    Abstract Dyscoria was observed in a female owl monkey and her two offspring. A third offspring was found dead with necrohemorrhagic encephalitis. Two males paired with the female died, one of which showed oral ulcers at necropsy. Histologic examination of the oral ulcers revealed syncytia and eosinophilic intranuclear inclusion bodies in epithelial cells. Ocular examination revealed posterior synechia associated with the dyscoria in all three animals. Serum samples from the female and her offspring were positive for Herpesvirus simplex antibodies by enzyme-linked immunosorbent assay. The clinical history, gross and microscopic lesions, and serology results suggests a herpesviral etiology, possibly, H. simplex or H. saimiri-1. This report underscores the risks associated with introducing animals into breeding or research colonies that were previously kept as pets or those from unknown origin that could carry asymptomatic pathogenic Herpesvirus infections. In addition, herpesviral infection should be considered among the differential diagnoses if dyscoria is observed in nonhuman primates.

  16. An analysis of Apulian micromammal populations by studying owl's pellets

    Directory of Open Access Journals (Sweden)

    Michele Bux

    2000-09-01

    Full Text Available Abstract The study contains data from 3302 preys found in Barn owl pellets from 15 sites within the Provinces of Foggia and Bari (Apulia, Southern Italy. Eleven micromammal species were identified. Microtus savii and Apodemus sylvaticus were the most frequents preys. No specimen of Clethrionomys glareolus and Apodemus flavicollis were found which is probably due to the habitat typology examined (all thermoxerophilous phytocoenosis. The Sorensen Index showed a high faunistic affinity among all the sites studied and other localities of Apulia. However, by applying the index of biocenotic differences (Renkonen a difference in some localities, in relation to Microtus savii and Insectivores abundance, was found.

  17. OWL-based reasoning methods for validating archetypes.

    Science.gov (United States)

    Menárguez-Tortosa, Marcos; Fernández-Breis, Jesualdo Tomás

    2013-04-01

    Some modern Electronic Healthcare Record (EHR) architectures and standards are based on the dual model-based architecture, which defines two conceptual levels: reference model and archetype model. Such architectures represent EHR domain knowledge by means of archetypes, which are considered by many researchers to play a fundamental role for the achievement of semantic interoperability in healthcare. Consequently, formal methods for validating archetypes are necessary. In recent years, there has been an increasing interest in exploring how semantic web technologies in general, and ontologies in particular, can facilitate the representation and management of archetypes, including binding to terminologies, but no solution based on such technologies has been provided to date to validate archetypes. Our approach represents archetypes by means of OWL ontologies. This permits to combine the two levels of the dual model-based architecture in one modeling framework which can also integrate terminologies available in OWL format. The validation method consists of reasoning on those ontologies to find modeling errors in archetypes: incorrect restrictions over the reference model, non-conformant archetype specializations and inconsistent terminological bindings. The archetypes available in the repositories supported by the openEHR Foundation and the NHS Connecting for Health Program, which are the two largest publicly available ones, have been analyzed with our validation method. For such purpose, we have implemented a software tool called Archeck. Our results show that around 1/5 of archetype specializations contain modeling errors, the most common mistakes being related to coded terms and terminological bindings. The analysis of each repository reveals that different patterns of errors are found in both repositories. This result reinforces the need for making serious efforts in improving archetype design processes. Copyright © 2012 Elsevier Inc. All rights reserved.

  18. TV spots' impact.

    Science.gov (United States)

    El-bakly, S

    1994-09-01

    The Information, Education and Communication (IEC) Center of the State Information Service was established in 1979 for the purpose of providing information to the people on the population issue. The Ministry of Information has accorded the State Information Service free TV and radio air time for family planning dramas and spots. In the early years information campaigns were organized to make people aware of the population problem by slogans, songs, and cartoons. Around 1984 misconceptions about family planning and contraceptives were attacked through a number of TV and radio spots. A few years later 21 spots on specific contraceptive methods were broadcast which were aired for three years over 3000 times. They were extremely successful. The impact of these TV spots was one of the major reasons why the contraceptive prevalence rate increased from 30% in 1984 to 38% in 1988 and 47% in 1992. Spots were also broadcast about the social implications of large families. The TV soap opera "And The Nile Flows On", with the family planning message interwoven into it, was very well received by the target audience. A program entitled "Wedding of the Month" features couples who know family planning well. The most successful radio program is a 15-20 minute long quiz show for residents of the villages where the Select Villages Project is being implemented. The State Information Service has 60 local information centers in the 26 governorates of Egypt that make plans for the family planning campaign. In 1992 the Minya Initiative, a family planning project was implemented in the Minya Governorate. As a result, the contraceptive prevalence rate rose from 22% to 30% over 18 months. A new project, the Select Village Project, was developed in 1993 that replicates the Minya Initiative on the village level in other governorates. This new project that was implemented in sixteen governorates.

  19. Organic Turkey Flocks: A Reservoir of Streptococcus gallolyticus subspecies gallolyticus.

    Directory of Open Access Journals (Sweden)

    Jochen Schulz

    Full Text Available Streptococcus gallolyticus subspecies gallolyticus (S. gallolyticus can colonise the gastrointestinal tract of humans and animals and is known to cause similar infections in both humans and animals. Data about the spread or prevalence in farm animals are missing. In this study, Trypton Soya Agar was modified to a selective medium enabling the isolation and quantification of S. gallolyticus from faecal samples. The bacterium was observed in 82 out of 91 faecal samples obtained from 18 different organic turkey flocks. The prevalence of shedding birds was estimated by the number of positive fresh droppings and reached up to 100% on most farms. Furthermore, for the first time S. gallolyticus was quantified in faeces from poultry flocks. The median of colony forming units (CFU per gramme faeces was 3.6 x 10(5 CFU/g. Typing of one isolate from each positive faecal sample by multilocus sequence typing delivered 24 sequence types (STs. Most of the isolates belonged to the clonal complex CC58. The same STs of this complex were detected in up to six different flocks. Partly, these flocks were located in various regions and stocked with varying breeding lines. Regarding the biochemical profiles of the same STs from different farms, the results did not contradict a spread of specific STs in the organic turkey production. Moreover, checking the pubMLST database revealed that STs found in this study were also found in other animal species and in humans. The high detection rate and the number of S. gallolyticus in turkey faeces indicate that this bacterium probably belongs to the common microbiota of the gastrointestinal tract of turkeys from organic flocks. Furthermore, the findings of this study support the suggestion of a possible interspecies transmission.

  20. To dare or not to dare? Risk management by owls in a predator-prey foraging game.

    Science.gov (United States)

    Embar, Keren; Raveh, Ashael; Burns, Darren; Kotler, Burt P

    2014-07-01

    In a foraging game, predators must catch elusive prey while avoiding injury. Predators manage their hunting success with behavioral tools such as habitat selection, time allocation, and perhaps daring-the willingness to risk injury to increase hunting success. A predator's level of daring should be state dependent: the hungrier it is, the more it should be willing to risk injury to better capture prey. We ask, in a foraging game, will a hungry predator be more willing to risk injury while hunting? We performed an experiment in an outdoor vivarium in which barn owls (Tyto alba) were allowed to hunt Allenby's gerbils (Gerbillus andersoni allenbyi) from a choice of safe and risky patches. Owls were either well fed or hungry, representing the high and low state, respectively. We quantified the owls' patch use behavior. We predicted that hungry owls would be more daring and allocate more time to the risky patches. Owls preferred to hunt in the safe patches. This indicates that owls manage risk of injury by avoiding the risky patches. Hungry owls doubled their attacks on gerbils, but directed the added effort mostly toward the safe patch and the safer, open areas in the risky patch. Thus, owls dared by performing a risky action-the attack maneuver-more times, but only in the safest places-the open areas. We conclude that daring can be used to manage risk of injury and owls implement it strategically, in ways we did not foresee, to minimize risk of injury while maximizing hunting success.

  1. Visual-auditory integration for visual search: a behavioral study in barn owls

    Directory of Open Access Journals (Sweden)

    Yael eHazan

    2015-02-01

    Full Text Available Barn owls are nocturnal predators that rely on both vision and hearing for survival. The optic tectum of barn owls, a midbrain structure involved in selective attention, has been used as a model for studying visual- auditory integration at the neuronal level. However, behavioral data on visual- auditory integration in barn owls are lacking. The goal of this study was to examine if the integration of visual and auditory signals contributes to the process of guiding attention towards salient stimuli. We attached miniature wireless video cameras on barn owls' heads (OwlCam to track their target of gaze. We first provide evidence that the area centralis (a retinal area with a maximal density of photoreceptors is used as a functional fovea in barn owls. Thus, by mapping the projection of the area centralis on the OwlCam's video frame, it is possible to extract the target of gaze. For the experiment, owls were positioned on a high perch and four food items were scattered in a large arena on the floor. In addition, a hidden loudspeaker was positioned in the arena. The positions of the food items and speaker were changed every session. Video sequences from the OwlCam were saved for offline analysis while the owls spontaneously scanned the room and the food items with abrupt gaze shifts (head saccades. From time to time during the experiment, a brief sound was emitted from the speaker. The fixation points immediately following the sounds were extracted and the distances between the gaze position and the nearest items and loudspeaker were measured. The head saccades were rarely towards the location of the sound source but to salient visual features in the room, such as the door knob or the food items. However, among the food items, the one closest to the loudspeaker had the highest probability of attracting a gaze shift. This result supports the notion that auditory signals are integrated with visual information for the selection of the next visual search

  2. Roth spots in pernicious anaemia

    OpenAIRE

    Macauley, Mavin; Nag, Satyajit

    2011-01-01

    Roth spots are white-centred retinal haemorrhages, previously thought to be pathognomonic for subacute bacterial endocarditis. A number of other conditions can be associated with Roth spots. In this case, the authors describe the association of Roth spots and pernicious anaemia. This association has been rarely described in the medical literature. Correct diagnosis and treatment with intramuscular vitamin B12 injections resulted in complete resolution of the anaemia and Roth spots. The author...

  3. Poisson Spot with Magnetic Levitation

    Science.gov (United States)

    Hoover, Matthew; Everhart, Michael; D'Arruda, Jose

    2010-01-01

    In this paper we describe a unique method for obtaining the famous Poisson spot without adding obstacles to the light path, which could interfere with the effect. A Poisson spot is the interference effect from parallel rays of light diffracting around a solid spherical object, creating a bright spot in the center of the shadow.

  4. Responses to playback of different subspecies songs in the Reed Bunting (Emberiza s. schoeniclus)

    DEFF Research Database (Denmark)

    Matessi, Giuliano; Dabelsteen, Torben; Pilastro, A.

    2000-01-01

    Populations of Reed Buntings Emberiza schoeniclus in the western Palearctic are classified in two major subspecies groups according to morphology: northern migratory schoeniclus and Mediterranean resident intermedia. Songs of the two groups differ mainly in complexity and syllable structure......, with intermedia songs being more complex. We explored the possibilities of song as a subspecies isolating mechanism by testing if male schoeniclus Reed Buntings reacted differently to field playbacks of songs from their own subspecies group, from the foreign subspecies group and from a control species...

  5. On the Spot: Oceans

    OpenAIRE

    Male, Alan; Butterfield, Moira

    2000-01-01

    This a children's non-fiction, knowledge bearing picture book that is part of a Reader's Digest series called 'On the Spot'. The series deals with a range of topics related to the natural world and this one introduces its young audience to the ecosystems of the oceans. \\ud The publication was illustrated and designed by the author (Alan Male) and is technically described as a board book with interactive 'pop up' features, specifically conceived to engage children's discovery and learning thro...

  6. El spot electoral negativo

    Directory of Open Access Journals (Sweden)

    Palma Peña-Jiménez

    2011-01-01

    Full Text Available l spot político tiene durante la campaña un objetivo final inequívoco: la consecución del voto favorable. Se dirige al cuerpo electoral a través de la televisión y de Internet, y presenta, en muchos casos, un planteamiento negativo, albergando mensajes destinados a la crítica frontal contra el adversario, más que a la exposición de propuestas propias. Este artículo se centra en el análisis del spot electoral negativo, en aquellas producciones audiovisuales construidas sin más causa que la reprobación del contrincante. Se trata de vídeos que, lejos de emplearse en difundir las potencialidades de la organización y las virtudes de su candidato –además de su programa electoral–, consumen su tiempo en descalificar al oponente mediante la transmisión de mensajes, muchas veces, ad hominem. Repasamos el planteamiento negativo del spot electoral desde su primera manifestación, que en España data de 1996, año de emisión del conocido como vídeo del dóberman, sin olvidar otros ejemplos que completan el objeto de estudio.

  7. A new subspecies of Nitokra affinis Gurney, 1927 (Copepoda, Harpacticoida) from the Caribbean coast of Colombia

    Science.gov (United States)

    Fuentes-Reinés, Juan M.; Suárez-Morales, Eduardo

    2014-01-01

    Abstract Plankton samples from Laguna Navio Quebrado, La Guajira, northern Colombia, yielded male and female specimens of an harpacticoid copepod that was first identified as the widely distributed species Nitokra affinis Gurney, 1927 for which at least four subspecies have been described from different geographic areas. A more detailed examination of the Colombian specimens revealed that it differs from the other morphs so far considered as subspecies. The Colombian specimens differ from the other four known subspecies in the following aspects: (1) rostrum with long projection, (2) relatively long exopod of P1, almost as long as first endopodal segment, (3) endopodal and exopodal rami of P2 equally long, (4) a reduced number of endopodal setal elements of the male P5. It also differs from N. a. californica Lang in details of the ornamentation of the urosomites. Descriptions and illustrations of this new subspecies, the first one described from the Neotropical region, are presented together with a key to the five known subspecies of Nitokra affinis. As in many other cases of presumedly widespread species of harpacticoids, it is possible that N. affinis represents a species complex with more restricted distributional patterns, a notion that certainly deserves further study. PMID:24574850

  8. Subspecies distribution and macrolide and fluoroquinolone resistance genetics of Mycobacterium abscessus in Korea.

    Science.gov (United States)

    Kim, J; Sung, H; Park, J-S; Choi, S-H; Shim, T-S; Kim, M-N

    2016-01-01

    Treating Mycobacterium abscessus infections with antimicrobials remains difficult, possibly due to drug resistance. To investigate the subspecies distribution of M. abscessus and its correlation with antibiotic susceptibility and the genetics of antibiotic resistance, focusing on macrolides and fluoroquinolones, in the Republic of Korea. A total of 53 M. abscessus isolates were identified to the subspecies level by sequencing of hsp65 and erm(41). The minimal inhibitory concentrations (MICs) of clarithromycin (CLM) and ciprofloxacin (CFX) were determined using Sensititre™ RAPMYCO plates. The rrl, gyrA and gyrB genes were sequenced to elucidate the molecular mechanisms of macrolide and fluoroquinolone resistance. Isolates included 22 M. abscessus subsp. abscessus and 31 M. abscessus subsp. bolletii. erm(41) sequences showing subspecies-specific deletions and sequence variations in the 28th nucleotide were concordant with inducible CLM resistance; however, mutations in rrl were not detected. Low- and high-level CFX resistance was observed in respectively 19 (35.8%) and 10 (18.9%) of the 53 clinical isolates, regardless of subspecies. However, no non-synonymous mutations were detected in gyrA or gyrB. Sequencing of the erm gene and subspeciation of M. abscessus may be used to predict inducible macrolide susceptibility. Further studies of the relationship between specific mutations in gyrA or gyrB to MIC change are required.

  9. Roth spots in pernicious anaemia.

    Science.gov (United States)

    Macauley, Mavin; Nag, Satyajit

    2011-04-19

    Roth spots are white-centred retinal haemorrhages, previously thought to be pathognomonic for subacute bacterial endocarditis. A number of other conditions can be associated with Roth spots. In this case, the authors describe the association of Roth spots and pernicious anaemia. This association has been rarely described in the medical literature. Correct diagnosis and treatment with intramuscular vitamin B(12) injections resulted in complete resolution of the anaemia and Roth spots. The authors hope to alert clinicians to think of various differentials of Roth spots, and initiate prompt investigation and management.

  10. Spatial, road geometric, and biotic factors associated with Barn Owl mortality along an interstate highway

    Science.gov (United States)

    Arnold, Erin M.; Hanser, Steven E.; Regan, Tempe; Thompson, Jeremy; Lowe, Melinda; Kociolek, Angela; Belthoff, James R.

    2018-01-01

    Highway programs typically focus on reducing vehicle collisions with large mammals because of economic or safety reasons while overlooking the millions of birds that die annually from traffic. We studied wildlife‐vehicle collisions along an interstate highway in southern Idaho, USA, with among the highest reported rates of American Barn Owl Tyto furcata road mortality. Carcass data from systematic and ad hoc surveys conducted in 2004–2006 and 2013–2015 were used to explore the extent to which spatial, road geometric, and biotic factors explained Barn Owl‐vehicle collisions. Barn Owls outnumbered all other identified vertebrate species of roadkill and represented > 25% of individuals and 73.6% of road‐killed birds. At a 1‐km highway segment scale, the number of dead Barn Owls decreased with increasing numbers of human structures, cumulative length of secondary roads near the highway, and width of the highway median. Number of dead Barn Owls increased with higher commercial average annual daily traffic (CAADT), small mammal abundance index, and with grass rather than shrubs in the roadside verge. The small mammal abundance index was also greater in roadsides with grass versus mixed shrubs, suggesting that Barn Owls may be attracted to grassy portions of the highway with more abundant small mammals for hunting prey. When assessed at a 3‐km highway segment scale, the number of dead Barn Owls again increased with higher CAADT as well as with greater numbers of dairy farms. At a 5‐km scale, number of dead Barn Owls increased with greater percentage of cropland near the highway. While human conversion of the environment from natural shrub‐steppe to irrigated agriculture in this region of Idaho has likely enhanced habitat for Barns Owls, it simultaneously has increased risk for owl‐vehicle collisions where an interstate highway traverses the altered landscape. We review some approaches for highway mitigation and suggest that reducing wildlife

  11. Automating generation of textual class definitions from OWL to English.

    Science.gov (United States)

    Stevens, Robert; Malone, James; Williams, Sandra; Power, Richard; Third, Allan

    2011-05-17

    Text definitions for entities within bio-ontologies are a cornerstone of the effort to gain a consensus in understanding and usage of those ontologies. Writing these definitions is, however, a considerable effort and there is often a lag between specification of the main part of an ontology (logical descriptions and definitions of entities) and the development of the text-based definitions. The goal of natural language generation (NLG) from ontologies is to take the logical description of entities and generate fluent natural language. The application described here uses NLG to automatically provide text-based definitions from an ontology that has logical descriptions of its entities, so avoiding the bottleneck of authoring these definitions by hand. To produce the descriptions, the program collects all the axioms relating to a given entity, groups them according to common structure, realises each group through an English sentence, and assembles the resulting sentences into a paragraph, to form as 'coherent' a text as possible without human intervention. Sentence generation is accomplished using a generic grammar based on logical patterns in OWL, together with a lexicon for realising atomic entities. We have tested our output for the Experimental Factor Ontology (EFO) using a simple survey strategy to explore the fluency of the generated text and how well it conveys the underlying axiomatisation. Two rounds of survey and improvement show that overall the generated English definitions are found to convey the intended meaning of the axiomatisation in a satisfactory manner. The surveys also suggested that one form of generated English will not be universally liked; that intrusion of too much 'formal ontology' was not liked; and that too much explicit exposure of OWL semantics was also not liked. Our prototype tools can generate reasonable paragraphs of English text that can act as definitions. The definitions were found acceptable by our survey and, as a result, the

  12. OWL representation of the geologic timescale implementing stratigraphic best practice

    Science.gov (United States)

    Cox, S. J.

    2011-12-01

    The geologic timescale is a cornerstone of the earth sciences. Versions are available from many sources, with the following being of particular interest: (i) The official International Stratigraphic Chart (ISC) is maintained by the International Commission for Stratigraphy (ICS), following principles developed over the last 40 years. ICS provides the data underlying the chart as part of a specialized software package, and the chart itself as a PDF using the standard colours; (ii) ITC Enschede has developed a representation of the timescale as a thesaurus in SKOS, used in a Web Map Service delivery system; (iii) JPL's SWEET ontology includes a geologic timescale. This takes full advantage of the capabilities of OWL. However, each of these has limitations - The ISC falls down because of incompatibility with web technologies; - While SKOS supports multilingual labelling, SKOS does not adequately support timescale semantics, in particular since it does not include ordering relationships; - The SWEET version (as of version 2) is not fully aligned to the model used by ICS, in particular not recognizing the role of the Global Boundary Stratotype Sections and Point (GSSP). Furthermore, it is distributed as static documents, rather than through a dynamic API using SPARQL. The representation presented in this paper overcomes all of these limitations as follows: - the timescale model is formulated as an OWL ontology - the ontology is directly derived from the UML representation of the ICS best practice proposed by Cox & Richard [2005], and subsequently included as the Geologic Timescale package in GeoSciML (http://www.geosciml.org); this includes links to GSSPs as per the ICS process - key properties in the ontology are also asserted to be subProperties of SKOS properties (topConcept and broader/narrower relations) in order to support SKOS-based queries; SKOS labelling is used to support multi-lingual naming and synonyms - the International Stratigraphic Chart is implemented

  13. Association of staphylococcus cohnii subspecies urealyticum infection with recurrence of renal staghorn stone.

    Science.gov (United States)

    Shahandeh, Zahra; Shafi, Hamid; Sadighian, Farahnaz

    2015-01-01

    Stphylococcus cohnii is an organism of coagulase negative species which is considered as normal flora. However, it has been isolated from urinary tract infections and surgical prostheses but its relation with staghorn stones has not been reported, yet. A 50-years-old woman presented with left renal staghorn stone in June 2014. She had bilateral staghorn stones 7 years ago. Staphylococcus cohnii subspecies urealyticum were detected from a removed stone. After 7 years, recurrence staghorn stone in her left kidney was diagnosed and patient underwent another surgery. The patient had several attacks of cystitis during these 7 years. The results of stone and urine cultures revealed staphylococcus cohnii subspecies urealyticum. This case report emphasizes a possible association between staphylococcus cohnii subspecies urealyticum infection and recurrence renal staghhorn stone.

  14. Rapid and accurate identification of Streptococcus equi subspecies by MALDI-TOF MS

    DEFF Research Database (Denmark)

    Kudirkiene, Egle; Welker, Martin; Knudsen, Nanna Reumert

    2015-01-01

    phenotypic and sequence similarity between three subspecies their discrimination remains difficult. In this study, we aimed to design and validate a novel, Superspectra based, MALDI-TOF MS approach for reliable, rapid and cost-effective identification of SEE and SEZ, the most frequent S. equi subspecies.......3±7.5%). This result may be attributed to the highly clonal population structure of SEE, as opposed to the diversity of SEZ seen in horses. Importantly strains with atypical colony appearance both within SEE and SEZ did not affect correct identification of the strains by MALDI-TOF MS. Atypical colony variants...... are often associated with a higher persistence or virulence of S. equi, thus their correct identification using the current method strengthens its potential use in routine clinical diagnostics. In conclusion, reliable identification of S. equi subspecies was achieved by combining a MALDI-TOF MS method...

  15. Diet of the Tawny Owl Strix aluco in the area of Slovenske gorice (NE Slovenia

    Directory of Open Access Journals (Sweden)

    Janžekovič Franc

    2017-11-01

    Full Text Available The diet of Tawny Owl Strix aluco was studied in the area of Slovenske gorice - NE Slovenia. The analysis was carried out by examining pellets collected at ten locations in the period from 1984 to 2015. From the pellets, 2,121 prey units were isolated. The predominant prey were mammals (Mammalia, 84.8%, followed by birds (Aves, 8.3%, insects (Insecta, 4.7%, frogs (Anura, 1.6% and earthworms (Oligochaeta, 0.5%. Four orders of mammals were found: rodents (Rodentia, insectivores (Insectivora, bats (Chiroptera and carnivores (Carnivora. The most frequent prey in the owls’ diet were voles (Arvicolinae, 46.6% and mice (Murinae, 28.8%, while the number of shrews (Soricidae was low (4.5%. The obtained results are in concordance with the conclusions of other studies. In the area of Slovenske gorice, the Tawny Owl is an opportunistic predator of small mammals with an emphasis on voles and mice. Prey frequencies differ significantly among some localities. Variability in proportions of prey species among localities can also be the result of sampling carried out in different seasons and variability in the population dynamics of small mammals among years. Challenges for future research are to describe seasonal variability of the diet and to evaluate interspecific competition within the guild of night predators of small mammals: Tawny Owl, Long-eared Owl Asio otus, and Barn Owl Tyto alba, which are sympatric in this area.

  16. Owls may use faeces and prey feathers to signal current reproduction.

    Directory of Open Access Journals (Sweden)

    Vincenzo Penteriani

    Full Text Available BACKGROUND: Many animals communicate by marking focal elements of their home range with different kinds of materials. Visual signaling has been demonstrated to play a previously unrecognized role in the intraspecific communication of eagle owls (Bubo bubo, in both territorial and parent-offspring contexts. Visual signals may play a role in a variety of circumstances in this crepuscular and nocturnal species. METHODOLOGY/PRINCIPAL FINDINGS: Here, we report that a large amount of extremely visible white faeces and prey feathers appear during the breeding season on posts and plucking sites in proximity to the nest, potentially representing a way for eagle owls to mark their territory. We present descriptive and experimental evidence showing that faeces and prey remains could act as previously unrecognized visual signals in a nocturnal avian predator. This novel signaling behavior could indicate the owls' current reproductive status to potential intruders, such as other territorial owls or non-breeding floaters. Faeces and prey feather markings may also advertise an owl's reproductive status or function in mate-mate communication. CONCLUSIONS/SIGNIFICANCE: We speculate that faeces marks and plucking may represent an overlooked but widespread method for communicating current reproduction to conspecifics. Such marking behavior may be common in birds, and we may now be exploring other questions and mechanisms in territoriality.

  17. Initial Investigation on the Diet of Eastern Grass Owl (Tyto longimembris in Southern Taiwan

    Directory of Open Access Journals (Sweden)

    Wen-Loung Lin

    2007-03-01

    Full Text Available This investigation, undertaken in the two regions of Nanshi and Yujing in Tainan County over the period of 2001 to 2003, included three nests belonging to the Eastern Grass Owl (Tyto longimembris. From these, we collected a total of 157 owl pellets. Analysis and examination of the pellets revealed 329 prey items. More in-depth investigation determined that 95.1% of the Eastern Grass Owl pellets collected consisted of mammal remains, while the remaining 4.9% were made up of bird remains. Of the various types of mammals consumed, rats made up the highest proportion, with a total of 285 rats, accounting for 86.6%. This was followed by 27 shrews and moles, accounting for 8.2%. Hares and birds were seldom caught and consumed. The findings suggested that rats are the main food source of the Eastern Grass Owl, with the Spinus Country-rat (Rattus losea comprising the majority with 136 counted (41.3%, followed by the Formosan Mouse (Mus caroli with 96 counted (29.2%. Regarding biomass, the reversion method was used to calculate that owls at the three nests consumed approximately 22,987 grams of mammal and 480 grams of bird, accounting for 98.0% and 2.0%, respectively. The biomass consumed for each pellet was approximately 149.5 g.

  18. Owls may use faeces and prey feathers to signal current reproduction.

    Science.gov (United States)

    Penteriani, Vincenzo; Delgado, Maria del Mar

    2008-08-20

    Many animals communicate by marking focal elements of their home range with different kinds of materials. Visual signaling has been demonstrated to play a previously unrecognized role in the intraspecific communication of eagle owls (Bubo bubo), in both territorial and parent-offspring contexts. Visual signals may play a role in a variety of circumstances in this crepuscular and nocturnal species. Here, we report that a large amount of extremely visible white faeces and prey feathers appear during the breeding season on posts and plucking sites in proximity to the nest, potentially representing a way for eagle owls to mark their territory. We present descriptive and experimental evidence showing that faeces and prey remains could act as previously unrecognized visual signals in a nocturnal avian predator. This novel signaling behavior could indicate the owls' current reproductive status to potential intruders, such as other territorial owls or non-breeding floaters. Faeces and prey feather markings may also advertise an owl's reproductive status or function in mate-mate communication. We speculate that faeces marks and plucking may represent an overlooked but widespread method for communicating current reproduction to conspecifics. Such marking behavior may be common in birds, and we may now be exploring other questions and mechanisms in territoriality.

  19. Expert2OWL: A Methodology for Pattern-Based Ontology Development.

    Science.gov (United States)

    Tahar, Kais; Xu, Jie; Herre, Heinrich

    2017-01-01

    The formalization of expert knowledge enables a broad spectrum of applications employing ontologies as underlying technology. These include eLearning, Semantic Web and expert systems. However, the manual construction of such ontologies is time-consuming and thus expensive. Moreover, experts are often unfamiliar with the syntax and semantics of formal ontology languages such as OWL and usually have no experience in developing formal ontologies. To overcome these barriers, we developed a new method and tool, called Expert2OWL that provides efficient features to support the construction of OWL ontologies using GFO (General Formal Ontology) as a top-level ontology. This method allows a close and effective collaboration between ontologists and domain experts. Essentially, this tool integrates Excel spreadsheets as part of a pattern-based ontology development and refinement process. Expert2OWL enables us to expedite the development process and modularize the resulting ontologies. We applied this method in the field of Chinese Herbal Medicine (CHM) and used Expert2OWL to automatically generate an accurate Chinese Herbology ontology (CHO). The expressivity of CHO was tested and evaluated using ontology query languages SPARQL and DL. CHO shows promising results and can generate answers to important scientific questions such as which Chinese herbal formulas contain which substances, which substances treat which diseases, and which ones are the most frequently used in CHM.

  20. Genetic consequences of population decline in the Danish population of the little owl (Athene noctua)

    DEFF Research Database (Denmark)

    Pertoldi, Cino; Pellegrino, Irene; Cucco, Maroc

    2012-01-01

    Background: Danish populations of the little owl (Athene noctua) have experienced dramaticdeclines in size over the past century. Before 1960 the little owl population was abundantin Denmark (estimated N>2000), but between 1960 and 1980 the population declinedrapidly, and since 1980 the little ow...

  1. Current status, distribution, and conservation of the Burrowing Owl (Speotyto cunicularia) in midwestern and western North America

    Science.gov (United States)

    Steven R. Sheffield

    1997-01-01

    The Burrowing Owl (Speotyto cunicularia) inhabits open prairie grassland habitat in the midwestern and western US and Canada. For several years now, numbers of this species in North America have been declining at an alarming rate. Currently, Burrowing Owls are listed as endangered in Canada and threatened in Mexico. In the United States, the...

  2. Survey on birds of prey and owls Falconiformes and Strigiformes) on Java sea islands: correction and additions.

    NARCIS (Netherlands)

    Nijman, V.

    2005-01-01

    ): In Southeast Asia the short-eared owl Asio flammeus is a northern migrant and is normally not recorded south of Singapore and, rarely, northern Borneo. The occurrence of short-eared owl in the Kangean archipelago, Java Sea, has been noted in several publications, including a recent one in this

  3. On the barn owl's visual pre-attack behavior: 1. Structure of head movements and motion patterns

    NARCIS (Netherlands)

    Ohayon, S.; Willigen, R.F. van der; Wagner, H.; Katsman, I.; Rivlin, E.

    2006-01-01

    Barn owls exhibit a rich repertoire of head movements before taking off for prey capture. These movements occur mainly at light levels that allow for the visual detection of prey. To investigate these movements and their functional relevance, we filmed the pre-attack behavior of barn owls. Off-line

  4. Prey selection of Tawny owls (Strix aluco) on Yellow necked mouse and Bank Vole

    DEFF Research Database (Denmark)

    Forsom, H. M.; Sunde, P.; Overskaug, K.

    As predators owls may have a strong impact on mortality of their favourite prey, and may therefore act as important selective agents on their prey species. Little is known, however, about whether owls choose prey randomly or if some prey items suffer a higher risk of predation due to certain life...

  5. Subspecies composition and founder contribution of the captive U.S. chimpanzee (Pan troglodytes) population.

    Science.gov (United States)

    Ely, John J; Dye, Brent; Frels, William I; Fritz, Jo; Gagneux, Pascal; Khun, Henry H; Switzer, William M; Lee, D Rick

    2005-10-01

    Chimpanzees are presently classified into three subspecies: Pan troglodytes verus from west Africa, P.t. troglodytes from central Africa, and P.t. schweinfurthii from east Africa. A fourth subspecies (P.t. vellerosus), from Cameroon and northern Nigeria, has been proposed. These taxonomic designations are based on geographical origins and are reflected in sequence variation in the first hypervariable region (HVR-I) of the mtDNA D-loop. Although advances have been made in our understanding of chimpanzee phylogenetics, little has been known regarding the subspecies composition of captive chimpanzees. We sequenced part of the mtDNA HVR-I region in 218 African-born population founders and performed a phylogenetic analysis with previously characterized African sequences of known provenance to infer subspecies affiliations. Most founders were P.t. verus (95.0%), distantly followed by the troglodytes schweinfurthii clade (4.6%), and a single P.t. vellerosus (0.4%). Pedigree-based estimates of genomic representation in the descendant population revealed that troglodytes schweinfurthii founder representation was reduced in captivity, vellerosus representation increased due to prolific breeding by a single male, and reproductive variance resulted in uneven representation among male P.t.verus founders. No increase in mortality was evident from between-subspecies interbreeding, indicating a lack of outbreeding depression. Knowledge of subspecies and their genomic representation can form the basis for phylogenetically informed genetic management of extant chimpanzees to preserve rare genetic variation for research, conservation, or possible future breeding. Copyright 2005 Wiley-Liss, Inc.

  6. The Spotting Distribution of Wildfires

    Directory of Open Access Journals (Sweden)

    Jonathan Martin

    2016-06-01

    Full Text Available In wildfire science, spotting refers to non-local creation of new fires, due to downwind ignition of brands launched from a primary fire. Spotting is often mentioned as being one of the most difficult problems for wildfire management, because of its unpredictable nature. Since spotting is a stochastic process, it makes sense to talk about a probability distribution for spotting, which we call the spotting distribution. Given a location ahead of the fire front, we would like to know how likely is it to observe a spot fire at that location in the next few minutes. The aim of this paper is to introduce a detailed procedure to find the spotting distribution. Most prior modelling has focused on the maximum spotting distance, or on physical subprocesses. We will use mathematical modelling, which is based on detailed physical processes, to derive a spotting distribution. We discuss the use and measurement of this spotting distribution in fire spread, fire management and fire breaching. The appendix of this paper contains a comprehensive review of the relevant underlying physical sub-processes of fire plumes, launching fire brands, wind transport, falling and terminal velocity, combustion during transport, and ignition upon landing.

  7. A novel multi-antigen virally vectored vaccine against Mycobacterium avium subspecies paratuberculosis.

    Directory of Open Access Journals (Sweden)

    Tim J Bull

    Full Text Available BACKGROUND: Mycobacterium avium subspecies paratuberculosis causes systemic infection and chronic intestinal inflammation in many species including primates. Humans are exposed through milk and from sources of environmental contamination. Hitherto, the only vaccines available against Mycobacterium avium subspecies paratuberculosis have been limited to veterinary use and comprised attenuated or killed organisms. METHODS: We developed a vaccine comprising a fusion construct designated HAV, containing components of two secreted and two cell surface Mycobacterium avium subspecies paratuberculosis proteins. HAV was transformed into DNA, human Adenovirus 5 (Ad5 and Modified Vaccinia Ankara (MVA delivery vectors. Full length expression of the predicted 95 kDa fusion protein was confirmed. PRINCIPAL FINDINGS: Vaccination of naïve and Mycobacterium avium subspecies paratuberculosis infected C57BL/6 mice using DNA-prime/MVA-boost or Ad5-prime/MVA-boost protocols was highly immunogenic resulting in significant IFN-gamma ELISPOT responses by splenocytes against recombinant vaccine antigens and a range of HAV specific peptides. This included strong recognition of a T-cell epitope GFAEINPIA located near the C-terminus of the fusion protein. Antibody responses to recombinant vaccine antigens and HAV specific peptides but not GFAEINPIA, also occurred. No immune recognition of vaccine antigens occurred in any sham vaccinated Mycobacterium avium subspecies paratuberculosis infected mice. Vaccination using either protocol significantly attenuated pre-existing Mycobacterium avium subspecies paratuberculosis infection measured by qPCR in spleen and liver and the Ad5-prime/MVA-boost protocol also conferred some protection against subsequent challenge. No adverse effects of vaccination occurred in any of the mice. CONCLUSIONS/SIGNIFICANCE: A range of modern veterinary and clinical vaccines for the treatment and prevention of disease caused by Mycobacterium avium

  8. Emerging hot spot analysis

    DEFF Research Database (Denmark)

    Reinau, Kristian Hegner

    Traditionally, focus in the transport field, both politically and scientifically, has been on private cars and public transport. Freight transport has been a neglected topic. Recent years has seen an increased focus upon congestion as a core issue across Europe, resulting in a great need for know...... speed data for freight. Secondly, the analytical methods used, space-time cubes and emerging hot spot analysis, are also new in the freight transport field. The analysis thus estimates precisely how fast freight moves on the roads in Northern Jutland and how this has evolved over time....

  9. Multiple paternity in polyandrous barn owls (Tyto alba.

    Directory of Open Access Journals (Sweden)

    Isabelle Henry

    Full Text Available In polyandrous species females produce successive clutches with several males. Female barn owls (Tyto alba often desert their offspring and mate to produce a 2(nd annual brood with a second male. We tested whether copulating during chick rearing at the 1(st annual brood increases the male's likelihood to obtain paternity at the 2(nd annual breeding attempt of his female mate in case she deserts their brood to produce a second brood with a different male. Using molecular paternity analyses we found that 2 out of 26 (8% second annual broods of deserting females contained in total 6 extra-pair young out of 15 nestlings. These young were all sired by the male with whom the female had produced the 1(st annual brood. In contrast, none of the 49 1(st annual breeding attempts (219 offspring and of the 20 2(nd annual breeding attempts (93 offspring of non-deserting females contained extra-pair young. We suggest that female desertion can select male counter-strategies to increase paternity and hence individual fitness. Alternatively, females may copulate with the 1(st male to derive genetic benefits, since he is usually of higher quality than the 2(nd male which is commonly a yearling individual.

  10. Complete mitochondrial genomes of two subspecies (Rhinolophus ferrumequinum nippon and Rhinolophus ferrumequinum tragatus) of the greater horseshoe bat (Chiroptera: Rhinolophidae).

    Science.gov (United States)

    Xiao, Yanhong; Sun, Keping; Feng, Jiang

    2017-01-01

    Rhinolophus ferrumequinum nippon and Rhinolophus ferrumequinum tragatus are two subspecies of Rhinolophus ferrumequinum currently recognized in China. In this study, their mitochondrial genomes were completely sequenced and annotated. Phylogenetic analyses indicated that R. f. nippon has a close relationship with two subspecies of R. ferrumequinum from Korea with 0.1% divergence, which indicated they are synonyms.

  11. Mitochondrial genome diversity and population structure of two western honey bee subspecies in the Republic of South Africa.

    Science.gov (United States)

    Eimanifar, Amin; Kimball, Rebecca T; Braun, Edward L; Ellis, James D

    2018-01-22

    Apis mellifera capensis Eschscholtz and A.m. scutellata Lepeletier are subspecies of western honey bees that are indigenous to the Republic of South Africa (RSA). Both subspecies have invasive potential and are organisms of concern for areas outside their native range, though they are important bees to beekeepers, agriculture, and the environment where they are native. The aim of the present study was to examine genetic differentiation among these subspecies and estimate their phylogenetic relationships using complete mitochondrial genomes sequences. We used 25 individuals that were either assigned to one of the subspecies or designated hybrids using morphometric analyses. Phylogenetic analyses of mitogenome sequences by maximum likelihood (ML) and Bayesian inference identified a monophyletic RSA clade, subdivided into two clades. A haplotype network was consistent with the phylogenetic trees. However, members of both subspecies occurred in both clades, indicating that A.m. capensis and A.m. scutellata are neither reciprocally monophyletic nor do they exhibit paraphyly with one subspecies nested within the other subspecies. Furthermore, no mitogenomic features were diagnostic to either subspecies. All bees analyzed from the RSA expressed a substantial level of haplotype diversity (most samples had unique haplotypes) but limited nucleotide diversity. The number of variable codons across protein-coding genes (PCGs) differed among loci, with CO3 exhibiting the most variation and ATP6 the least.

  12. Descriptions of a new species and subspecies of Halysidota Hübner, [1819] from Mexico (Lepidoptera: Erebidae: Arctiinae)

    OpenAIRE

    Benoît Vincent; Michel Laguerre

    2017-01-01

    A new species and subspecies of the genus Halysidota are described from Mexico and Guadeloupe respectively: Halysidota witti sp. nov. and Halysidota leda guadulpensis ssp. nov. Details of the new species and subspecies descriptions are based upon morphological and molecular characters as well as distributional data.

  13. Structure and amount of genetic variation at minisatellite loci within the subspecies complex of Phoca vitulina (the harbour seal)

    NARCIS (Netherlands)

    Kappe, A.L.; Bijlsma, R.; Osterhaus, ADME; van Delden, W.; van de Zande, L.

    The structure and amount of genetic variation within and between three subspecies of the harbour seal Phoca vitulina was assessed by multilocus DNA fingerprinting. Bandsharing similarity indicates that the subspecies Phoca vitulina richarhsi (Alaska, East Pacific) is clearly separated from the other

  14. Using AberOWL for fast and scalable reasoning over BioPortal ontologies

    KAUST Repository

    Slater, Luke

    2016-08-08

    Background: Reasoning over biomedical ontologies using their OWL semantics has traditionally been a challenging task due to the high theoretical complexity of OWL-based automated reasoning. As a consequence, ontology repositories, as well as most other tools utilizing ontologies, either provide access to ontologies without use of automated reasoning, or limit the number of ontologies for which automated reasoning-based access is provided. Methods: We apply the AberOWL infrastructure to provide automated reasoning-based access to all accessible and consistent ontologies in BioPortal (368 ontologies). We perform an extensive performance evaluation to determine query times, both for queries of different complexity and for queries that are performed in parallel over the ontologies. Results and conclusions: We demonstrate that, with the exception of a few ontologies, even complex and parallel queries can now be answered in milliseconds, therefore allowing automated reasoning to be used on a large scale, to run in parallel, and with rapid response times.

  15. Seasonal survival rates and causes of mortality of Little Owls in Denmark

    DEFF Research Database (Denmark)

    Thorup, Kasper; Pedersen, Dorthe; Sunde, Peter

    2013-01-01

    Survival rate is an essential component of population dynamics; therefore, identification of variation in mortality rates and the factors that influence them might be of key importance in understanding why populations increase or decrease. In Denmark, the Little Owl Athene noctua, a species...... the causes of current survival rates, we estimated age- and season-specific survival rates and causes of mortality in Danish Little Owls on the basis of ringed birds 1920–2002, radio tagged adult and juveniles 2005–2008 and nest surveys 2006–2008. We estimate that 32 % of all eggs fledge and survive to 2...... the breeding season. In radio-tagged adults and fledged juveniles, accidents in buildings and other human infrastructures were responsible for two-thirds of all fatalities. Anthropogenic habitats currently comprise the nesting and roosting habitats for the last Danish Little Owls. The accidental deaths...

  16. 77 FR 14061 - Endangered and Threatened Wildlife and Plants; Revised Critical Habitat for the Northern Spotted Owl

    Science.gov (United States)

    2012-03-08

    ... ranges from dry, fire-prone forests to moist old-growth conifer forest to a mix of conifers and hardwood trees. Thousands of species occur in these forest ecosystems, including other listed species with very... wildfires; hazard tree removal; removal of younger, shade-intolerant conifers to reduce competition with...

  17. Using MODIS NDVI phenoclasses and phenoclusters to characterize wildlife habitat: Mexican spotted owl as a case study

    Science.gov (United States)

    Serra J. Hoagland; Paul Beier; Danny Lee

    2018-01-01

    Most uses of remotely sensed satellite data to characterize wildlife habitat have used metrics such as mean NDVI (Normalized Difference Vegetation Index) in a year or season. These simple metrics do not take advantage of the temporal patterns in NDVI within and across years and the spatial arrangement of cells with various temporal NDVI signatures. Here we use 13 years...

  18. 77 FR 27010 - Endangered and Threatened Wildlife and Plants; Revised Critical Habitat for the Northern Spotted Owl

    Science.gov (United States)

    2012-05-08

    ... Convention Center, 777 NE Martin Luther King Blvd., Portland, Oregon; 503-235-7575. Public Meetings: Public information meetings will be held at: University of Washington, Tacoma Campus, 1900 Commerce St., Jane Russell..., California 96001; 530-229-0036; Oregon Convention Center, Room C-120, 777 NE Martin Luther King Blvd...

  19. Post-fledging behaviour of juveniles in the little owl (Athene noctua)

    DEFF Research Database (Denmark)

    Pedersen, Dorthe; Thorup, Kasper; Sunde, Peter

    2013-01-01

    Before dispersal, social and spatial behaviour in owls has only been briefly studied. We used radio tracking to monitor age-influenced social and spatial behaviour in 10 juvenile Little Owls (Athene noctua) from nests in Northern Jutland, Denmark. On average, the post-fledging dependency period.......53 ha (mean ± SD) from fledging to independence and 3.25 ± 4.15 ha from independence to dispersal.Within the first 40 days after fledging, the nightly distance from the nest and the distance between siblings increased, and the frequency and intensity of begging calls decreased. These results were...

  20. Towards Self-managed Pervasive Middleware using OWL/SWRL ontologies

    DEFF Research Database (Denmark)

    Zhang, Weishan; Hansen, Klaus Marius

    2008-01-01

    Self-management for pervasive middleware is important to realize the Ambient Intelligence vision. In this paper, we present an OWL/SWRL context ontologies based self-management approach for pervasive middleware where OWL ontology is used as means for context modeling. The context ontologies....../SWRL context ontologies based self-management approach with the self-diagnosis in Hydra middleware, using device state machine and other dynamic context information, for example web service calls. The evaluations in terms of extensibility, performance and scalability show that this approach is effective...

  1. A new subspecies of Phascolion Theel, 1875 (Sipuncula: Golfingiidae) from Indian waters

    Digital Repository Service at National Institute of Oceanography (India)

    Saiz, J.I.; Bustamante, M.; Tajadura, J.; Vijapure, T.; Sukumaran, S.

    , vol.3931(3); 2015; 433-437 A new subspecies of Phascolion Théel, 1875 (Sipuncula: Golfingiidae) from Indian waters JOSÉ I. SAIZ1, MARIA BUSTAMANTE1, JAVIER TAJADURA1, TEJAL VIJAPURE2 & SONIYA SUKUMARAN2 1 Universidad del País Vasco / EHU, 48080...

  2. Genetic and environmental effects on seed weight in subspecies of big sagebrush: Applications for restoration

    Science.gov (United States)

    Bryce A. Richardson; Hector G. Ortiz; Stephanie L. Carlson; Deidre M. Jaeger; Nancy L. Shaw

    2015-01-01

    The sagebrush steppe is a patchwork of species and subspecies occupying distinct environmental niches across the intermountain regions of western North America. These ecosystems face degradation from disturbances and exotic weeds. Using sagebrush seed that is matched to its appropriate niche is a critical component to successful restoration, improving habitat for the...

  3. Subspecies identification of captive Orang Utan in Melaka based on D-loop mitochondria DNA

    Science.gov (United States)

    Kamaluddin, Siti Norsyuhada; Yaakop, Salmah; Idris, Wan Mohd Razi; Rovie-Ryan, Jeffrine Japning; Md-Zain, Badrul Munir

    2018-04-01

    Mitochondrial DNA of Bornean Orang Utan populations suggests that there are three different subspecies (Pongo pygmaeus pygmaeus; Sarawak & Northwest Kalimantan, P. p. wurmbii; Southern West Kalimantan and Central Kalimantan, P. p. morio; East Kalimantan and Sabah). The subspecies of Orang Utans in captivity are difficult to determine through morphological observation. Thus, misidentification by ranger or zoo staffs leads to unwanted consequences especially towards conservation efforts of Orang Utan. The main objective of this study was to identify the subspecies and the geographic origin of 10 Orang Utans in Zoo Melaka and A' Famosa by using partial mitochondrial D-loop gene sequences. DNA of all individuals was extracted from FTA Card. Data analyses were performed using Maximum Parsimony, MP and Neighbor Joining, NJ. Molecular phylogeny analysis revealed that all the samples likely belong to one species of Sumatran Orang Utan (P. abelii) and three different subspecies of Bornean Orang Utans (P. p. pygmaeus, P. p. morio, and P. p. wurmbii). The results obtained in this study indirectly help the management of zoos in term of conservation and visitor's education.

  4. Mycobacterium avium subspecies paratuberculosis recombinant proteins modulate antimycobacterial functions of bovine macrophages

    Science.gov (United States)

    It has been shown that Mycobacterium avium subspecies paratuberculosis (M. paratuberculosis) activates the Mitogen Activated Protein Kinase (MAPK) p38 pathway, yet it is unclear which components of M. paratuberculosis are involved in the process. Therefore, a set of 42 M. paratuberculosis recombinan...

  5. Mitogenomic phylogenetics of fin whales (Balaenoptera physalus spp.) : Genetic evidence for revision of subspecies

    NARCIS (Netherlands)

    Archer, Frederick I.; Morin, Phillip A.; Hancock-Hanser, Brittany L.; Robertson, Kelly M.; Leslie, Matthew S.; Bérubé, Martine; Panigada, Simone; Taylor, Barbara L.

    2013-01-01

    There are three described subspecies of fin whales (Balaenoptera physalus): B. p. physalus Linnaeus, 1758 in the Northern Hemisphere, B. p. quoyi Fischer, 1829 in the Southern Hemisphere, and a recently described pygmy form, B. p. patachonica Burmeister, 1865. The discrete distribution in the North

  6. Molecular variation of Trypanosoma brucei subspecies as revealed by AFLP fingerprinting

    NARCIS (Netherlands)

    Agbo, E.E.C.; Majiwa, P.A.O.; Claassen, H.J.H.M.; Pas, te M.F.W.

    2002-01-01

    Genetic analysis of Trypanosoma spp. depends on the detection of variation between strains. We have used the amplified fragment length polymorphism (AFLP) technique to develop a convenient and reliable method for genetic characterization of Trypanosome (sub)species. AFLP accesses multiple

  7. Detection of Mycobacterium avium subspecies paratuberculosis in Drinking Water and Biofilms Using Quantitative PCR

    Science.gov (United States)

    Mycobacterium avium subspecies paratuberculosis (MAP) causes Johne’s disease in domestic animals and has been implicated in Crohn’s disease in humans. This bacterium is a slow growing, gram-positive, acid-fast organism which can be difficult to culture from the environment. For ...

  8. Streptococcus equi subspecies zooepidemicus Infections in Humans by Zoonotic Transmission from Horses

    Centers for Disease Control (CDC) Podcasts

    2013-06-12

    Dr. Mike Miller reads an abridged version of the Emerging Infectious Diseases’ article, Streptococcus equi subspecies zooepidemicus Infections in Humans by Zoonotic Transmission from Horses.  Created: 6/12/2013 by National Center for Emerging and Zoonotic Infectious Diseases (NCEZID).   Date Released: 7/3/2013.

  9. Interest in Providing Multiple Sclerosis Care and Subspecializing in Multiple Sclerosis Among Neurology Residents

    Science.gov (United States)

    Teixeira-Poit, Stephanie; Kane, Heather L.; Frost, A. Corey; Keating, Michael; Olmsted, Murrey

    2014-01-01

    Background: Although detailed knowledge regarding treatment options for multiple sclerosis (MS) patients is largely limited to neurologists, shortages in the neurologist workforce, including MS subspecialists, are predicted. Thus, MS patients may have difficulties in gaining access to appropriate care. No systematic evaluation has yet been performed of the number of neurology residents planning to pursue MS subspecialization. This study identifies factors affecting interest in providing MS patient care or MS subspecialization among current neurology residents. Methods: We randomly selected half of all Accreditation Council of Graduate Medical Education–certified neurology residency programs in the continental United States to receive the neurology resident survey. Completed surveys were received from 218 residents. Results: Residents were significantly more likely to have increased interest in MS care when they participated in MS research, were interested in teaching, and indicated that the “ability to improve patient outcomes and quality of life” was a positive factor influencing their desire to provide MS patient care. Residents who were interested in providing MS care, interested in teaching, and indicated that “research opportunities” was a positive factor for providing MS patient care were significantly more likely to express interest in MS subspecialization. Conclusions: Increasing opportunities to interact with MS patients, learn about MS care, and participate in MS research may increase interest in MS care and subspecialization among neurology residents. Opportunities to educate residents regarding MS patient care may affect residents’ attitudes. PMID:24688352

  10. A new subspecies of Accipiter virgatus (Temminck) from Flores, Lesser Sunda Islands, Indonesia (Aves: Accipitridae)

    NARCIS (Netherlands)

    Mees, G.F.

    1984-01-01

    A new subspecies of Accipiter virgatus (Temminck) is described from Flores (Lesser Sunda Islands). In addition some notes are given on the distribution of A. virgatus in south-eastern Burma and adjacent parts of Thailand, supplementary to an earlier paper (Mees, 1981).

  11. Spatial genetic structure across a hybrid zone between European rabbit subspecies

    Directory of Open Access Journals (Sweden)

    Fernando Alda

    2014-09-01

    Full Text Available The Iberian Peninsula is the only region in the world where the two existing subspecies of the European rabbit (Oryctolagus cuniculus naturally occur and hybridize. In this study we explore the relative roles of historical and contemporary processes in shaping the spatial genetic structure of the rabbit across its native distribution range, and how they differently affect each subspecies and the hybrid zone. For that purpose we obtained multilocus genotypes and mitochondrial DNA data from 771 rabbits across most of the distribution range of the European rabbit in Spain. Based on the nuclear markers we observed a hierarchical genetic structure firstly comprised by two genetic groups, largely congruent with the mitochondrial lineages and subspecies distributions (O. c. algirus and O. c. cuniculus, which were subsequently subdivided into seven genetic groups. Geographic distance alone emerged as an important factor explaining genetic differentiation across the whole range, without the need to invoke for the effect for geographical barriers. Additionally, the significantly positive spatial correlation up to a distance of only 100 km supported the idea that differentiation at a local level is of greater importance when considering the species overall genetic structure. When looking at the subspecies, northern populations of O. c. cuniculus showed more spatial genetic structure and differentiation than O. c. algirus. This could be due to local geographic barriers, limited resources, soil type and/or social behavior limiting dispersal. The hybrid zone showed similar genetic structure to the southern populations but a larger introgression from the northern lineage genome. These differences have been attributed to selection against the hybrids rather than to behavioral differences between subspecies. Ultimately, the genetic structure of the rabbit in its native distribution range is the result of an ensemble of factors, from geographical and ecological

  12. Investigating concordance among genetic data, subspecies circumscriptions and hostplant use in the nymphalid butterfly Polygonia faunus.

    Directory of Open Access Journals (Sweden)

    Ullasa Kodandaramaiah

    Full Text Available Subspecies are commonly used taxonomic units to formally describe intraspecific geographic variation in morphological traits. However, the concept of subspecies is not clearly defined, and there is little agreement about what they represent in terms of evolutionary units, and whether they can be used as reliably useful units in conservation, evolutionary theory and taxonomy. We here investigate whether the morphologically well-characterized subspecies in the North American butterfly Polygonia faunus are supported by genetic data from mitochondrial sequences and eight microsatellite loci. We also investigate the phylogeographic structure of P. faunus and test whether similarities in host-plant use among populations are related to genetic similarity. Neither the nuclear nor the mitochondrial data corroborated subspecies groupings. We found three well defined genetic clusters corresponding to California, Arizona and (New Mexico+Colorado. There was little structuring among the remaining populations, probably due to gene flow across populations. We found no support for the hypothesis that similarities in host use are related to genetic proximity. The results indicate that the species underwent a recent rapid expansion, probably from two glacial refugia in western North America. The mitochondrial haplotype network indicates at least two independent expansion phases into eastern North America. Our results clearly demonstrate that subspecies in P. faunus do not conform to the structuring of genetic variation. More studies on insects and other invertebrates are needed to better understand the scope of this phenomenon. The results of this study will be crucial in designing further experiments to understand the evolution of hostplant utilization in this species.

  13. Map-Based Repowering and Reorganization of a Wind Resource Area to Minimize Burrowing Owl and Other Bird Fatalities

    Directory of Open Access Journals (Sweden)

    Lee Neher

    2009-10-01

    Full Text Available Wind turbines in the Altamont Pass Wind Resource Area (Alameda/Contra Costa Counties, California, USA generate about 730 GWh of electricity annually, but have been killing thousands of birds each year, including >2,000 raptors and hundreds of burrowing owls. We have developed collision hazard maps and hazard ratings of wind turbines to guide relocation of existing wind turbines and careful repowering to modern turbines to reduce burrowing owl fatalities principally, and other birds secondarily. Burrowing owls selected burrow sites lower on slopes and on smaller, shallower slopes than represented by the average 10 × 10 m2 grid cell among 187,908 grid cells sampled from 2,281,169 grid cells comprising a digital elevation model (DEM of the study area. Fuzzy logic and discriminant function analysis produced likelihood surfaces encompassing most burrowing owl burrows within a fraction of the study area, and the former corresponded with burrowing owl fatalities and the latter with other raptor fatalities. Our ratings of wind turbine hazard were more predictive of burrowing owl fatalities, but would be more difficult to implement. Careful repowering to modern wind turbines would most reduce fatalities of burrowing owls and other birds while adding about 1,000 GWh annually toward California’s 33% Renewable Portfolio Standard.

  14. Map-based repowering and reorganization of a wind resource area to minimize burrowing owl and other bird fatalities

    Energy Technology Data Exchange (ETDEWEB)

    Smallwood, K. S. [Research Ecologist, 3108 Finch Street, Davis, CA 95616 (United States); Neher, L. [Gis Specialist, Neher Consulting, 7241 34th Street, North Highlands, CA 95660 (United States); Bell, D. A. [East Bay Regional Park District, 2950 Peralta Oaks Court, Oakland, CA 94605-0381 (United States)

    2009-07-01

    Wind turbines in the Altamont Pass Wind Resource Area (Alameda/Contra Costa Counties, California, USA) generate about 730 GWh of electricity annually, but have been killing thousands of birds each year, including >2,000 raptors and hundreds of burrowing owls. We have developed collision hazard maps and hazard ratings of wind turbines to guide relocation of existing wind turbines and careful repowering to modern turbines to reduce burrowing owl fatalities principally, and other birds secondarily. Burrowing owls selected burrow sites lower on slopes and on smaller, shallower slopes than represented by the average 10 x 10 m{sup 2} grid cell among 187,908 grid cells sampled from 2,281,169 grid cells comprising a digital elevation model (DEM) of the study area. Fuzzy logic and discriminant function analysis produced likelihood surfaces encompassing most burrowing owl burrows within a fraction of the study area, and the former corresponded with burrowing owl fatalities and the latter with other raptor fatalities. Our ratings of wind turbine hazard were more predictive of burrowing owl fatalities, but would be more difficult to implement. Careful repowering to modern wind turbines would most reduce fatalities of burrowing owls and other birds while adding about 1,000 GWh annually toward California's 33% Renewable Portfolio Standard. (author)

  15. Models of spots and flares

    International Nuclear Information System (INIS)

    Mullan, D.J.

    1983-01-01

    Laboratory experiments in recent years have shown that there are many more ways to drive a plasma out of equilibrium than to preserve equilibrium. In that sense, it is perhaps easier to understand why flares should occur in a stellar atmosphere than why a long-lived feature such as a dark spot should persist. The author summarizes work on the equilibrium structure of cool spots in the sun and stars. Since spots involve complex interactions between convective flows and magnetic fields, he needs to refer to observations for help in identifying the dominant processes which should enter into the modelling. His summary therefore begins by discussing certain relevant properties of spots in the solar atmosphere. The next sections deal with the magnetic fields in spots, the stability of spots, spot cooling and missing flux. The author concludes that spots should be viewed not simply as cool areas, but rather as engines which do the work of converting the energy of convective flows into flare-compatible form. (Auth.)

  16. Black-spot poison ivy.

    Science.gov (United States)

    Schram, Sarah E; Willey, Andrea; Lee, Peter K; Bohjanen, Kimberly A; Warshaw, Erin M

    2008-01-01

    In black-spot poison ivy dermatitis, a black lacquerlike substance forms on the skin when poison ivy resin is exposed to air. Although the Toxicodendron group of plants is estimated to be the most common cause of allergic contact dermatitis in the United States, black-spot poison ivy dermatitis is relatively rare.

  17. Rocky Mountain spotted fever, Colombia.

    Science.gov (United States)

    Hidalgo, Marylin; Orejuela, Leonora; Fuya, Patricia; Carrillo, Pilar; Hernandez, Jorge; Parra, Edgar; Keng, Colette; Small, Melissa; Olano, Juan P; Bouyer, Donald; Castaneda, Elizabeth; Walker, David; Valbuena, Gustavo

    2007-07-01

    We investigated 2 fatal cases of Rocky Mountain spotted fever that occurred in 2003 and 2004 near the same locality in Colombia where the disease was first reported in the 1930s. A retrospective serosurvey of febrile patients showed that > 21% of the serum samples had antibodies aaainst spotted fever group rickettsiae.

  18. Advances in spot curing technology

    International Nuclear Information System (INIS)

    Burga, R.

    1999-01-01

    A brief review of spot curing technology was presented. The process which a spot of energy of a specific wavelength bandwidth and irradiance is used to cause a coating, encapsulant or adhesive to change from a liquid to a solid state

  19. The effects of forest structure on occurrence and abundance of three owl species (Aves: Strigidae in the Central Amazon forest

    Directory of Open Access Journals (Sweden)

    Obed G. Barros

    2009-03-01

    Full Text Available We investigated how forest structure affects the occurrence and abundance of three owl species: the crested owl Lophostrix cristata Daudin, 1800, the Amazon pygmy owl Glaucidium hardyi Vielliard, 1990, and the tawny-bellied screech owl Megascops watsonii Cassin, 1849. We surveyed the owls mostly between 07:00 and 11:00 pm from July 2001 to April 2002, in eighteen 8 km transects along trails at the Ducke Reserve, Manaus, Central Amazon, Brazil. We staked out 50 x 50 m plots where the presence and absence of the owls were recorded. We compared some components of the forest structure between plots where owls were present and plots where they were absent. The spatial variation in these components were related to the occurrence and abundance of the owls using models of multiple logistic and multiple linear regressions analysis, respectively. Lophostrix cristata is rare in many other areas of the Amazon forest, but it was the most abundant in our study area. Lophostrix cristata and G. hardyi were more concentrated along the uplands (central plateau, which divide the reserve into two drainage water-basins. Megascops watsonii was distributed mainly in the southeastern part of the reserve. Glaucidium hardyi was more often found in areas with larger canopy openness. In areas with higher abundance of snags, there was significantly higher occurrence of L. cristata and M. watsonii. Megascops watsonii was also more abundant in areas with higher abundance of forest trees and in areas bearing shallower leaf litter on the forest floor. This study is the first to analyze at large spatial scale the effects of forest structure on neotropical forest top predator nocturnal birds. The results indicate that forest structure can affect the occurrence and abundance of owls in the Amazon forest.

  20. Bacteraemia due to Streptococcus gallolyticus subspecies pasteurianus is associated with digestive tract malignancies and resistance to macrolides and clindamycin.

    Science.gov (United States)

    Sheng, Wang-Huei; Chuang, Yu-Chung; Teng, Lee-Jene; Hsueh, Po-Ren

    2014-08-01

    This study was intended to delineate the association between digestive tract malignancies and bacteraemia due to Streptococcus gallolyticus subspecies pasteurianus. We reviewed the medical records and microbiological results of patients with bacteraemia due to Streptococcus bovis during the period 2000-2012. Species and subspecies identification of isolates originally classified as S. bovis was confirmed by 16S rRNA sequencing and PCR restriction fragment length polymorphism (PCR-RFLP) assays. Minimum inhibitory concentrations of antimicrobial agents were determined by the broth microdilution method. Of the 172 S. bovis complex isolates obtained from 172 patients (age range, Streptococcus infantarius. The majority (n = 104, 60%) of patients were male and had underlying malignancies (n = 87, 51%). Bacteraemia due to S. gallolyticus subspecies gallolyticus was significantly associated with endocarditis while S. gallolyticus subspecies pasteurianus was more likely to be associated with malignancies of the digestive tract, including gastric, pancreatic, hepatobiliary and colorectal cancers. Septic shock at presentation was the only factor associated with mortality among patients with bacteraemia due to either subspecies of S. bovis. Isolates of S. gallolyticus subspecies pasteurianus had higher rates of resistance to macrolides and clindamycin than isolates of S. gallolyticus subspecies gallolyticus. Extensive diagnostic work-up for digestive tract malignancies and trans-esophageal echocardiogram should be investigated in patients with bacteraemia caused by S. gallolyticus. Copyright © 2014 The British Infection Association. Published by Elsevier Ltd. All rights reserved.

  1. A telemetry study of the social organization of a tawny owl (Strix aluco) population

    DEFF Research Database (Denmark)

    Sunde, Peter; Bølstad, Mikkel S.

    2004-01-01

    The spatial dispersion and social interactions were studied in 11 neighbouring pairs of radio-tagged tawny owls Strix aluco in a deciduous wood in Denmark from 1998-2001. The numbers and shapes of territories were stable throughout the survey and similar to a mapping made 40 years earlier. The home...... involving one owl only from each pair. The dispute rate between neighbouring pairs correlated positively with home-range overlap. The total annual mortality was 21% (95% CI: 6-33%). Dead owners were usually replaced within 1-2 months. Two out of four cases of radio-tagged owls disappearing from...

  2. The tissue microarray OWL schema: An open-source tool for sharing tissue microarray data

    Directory of Open Access Journals (Sweden)

    Hyunseok P Kang

    2010-01-01

    Full Text Available Background: Tissue microarrays (TMAs are enormously useful tools for translational research, but incompatibilities in database systems between various researchers and institutions prevent the efficient sharing of data that could help realize their full potential. Resource Description Framework (RDF provides a flexible method to represent knowledge in triples, which take the form Subject- Predicate-Object. All data resources are described using Uniform Resource Identifiers (URIs, which are global in scope. We present an OWL (Web Ontology Language schema that expands upon the TMA data exchange specification to address this issue and assist in data sharing and integration. Methods: A minimal OWL schema was designed containing only concepts specific to TMA experiments. More general data elements were incorporated from predefined ontologies such as the NCI thesaurus. URIs were assigned using the Linked Data format. Results: We present examples of files utilizing the schema and conversion of XML data (similar to the TMA DES to OWL. Conclusion: By utilizing predefined ontologies and global unique identifiers, this OWL schema provides a solution to the limitations of XML, which represents concepts defined in a localized setting. This will help increase the utilization of tissue resources, facilitating collaborative translational research efforts.

  3. Chapter 6. Conservation status of flammulated owls in the United States

    Science.gov (United States)

    D. Archibald McCallum

    1994-01-01

    The status of the flammulated owl will be evaluated in this chapter by asking a series of critical questions about the species and its habitat. Answers to these questions will be used to reach one of the following conclusions: (1) populations in the United States are secure and will likely remain so given current land management practices; (2) populations are in peril...

  4. Brent goose colonies near snowy owls: Internest distances in relation to breeding arctic fox densities

    NARCIS (Netherlands)

    Kharitonov, S.P.; Ebbinge, B.S.; De Fouw, J.

    2013-01-01

    It was shown that in the years when the numbers of the Arctic foxes are high, even though the lemming numbers are high as well, Brent geese nest considerably closer to owls' nests than in the years with low Arctic fox numbers. At values of the Arctic fox densities greater than one breeding pair per

  5. Territories of flammulated owls (Otus flammeolus): Is occupancy a measure of habitat quality?

    Science.gov (United States)

    Brian D. Linkhart; Richard T. Reynolds

    1997-01-01

    Annual territory occupancy by Flammulated Owls (Otus flammeolus) in Colorado was evaluated from 1981-1996. Fourteen territories occurred within a 452 ha study area. Each year, three to six territories were occupied by breeding pairs and three to seven were occupied by unpaired males. Territories were occupied by breeding pairs a mean of 5.1 years (...

  6. Some Guides to Discovery About Elm Trees, Owls, Cockroaches, Earthworms, Cement and Concrete.

    Science.gov (United States)

    Busch, Phyllis S.

    The introduction emphasizes the need for environmental and conservation education, and advocates an inquiry approach. Outdoor resources available to every school are listed. Detailed suggestions are made for investigating cement and concrete, cockroaches, earthworms, elm trees, and owls. In each case general background information and a list of…

  7. 75 FR 63800 - Information Collection; Commercial Use of the Woodsy Owl Symbol

    Science.gov (United States)

    2010-10-18

    ... to collect royalty fees. Commercial use includes replicating Woodsy Owl symbol or logo on items, such... royalty fees. Information collected includes, but is not limited to, tenure of business or non-profit... Forest Service royalty fee. 5. Royalty fee due based on sales quantity and price. 6. Description and...

  8. Optical Waveguide Lightmode Spectroscopy (OWLS as a Sensor for Thin Film and Quantum Dot Corrosion

    Directory of Open Access Journals (Sweden)

    Jinke Tang

    2012-12-01

    Full Text Available Optical waveguide lightmode spectroscopy (OWLS is usually applied as a biosensor system to the sorption-desorption of proteins to waveguide surfaces. Here, we show that OWLS can be used to monitor the quality of oxide thin film materials and of coatings of pulsed laser deposition synthesized CdSe quantum dots (QDs intended for solar energy applications. In addition to changes in data treatment and experimental procedure, oxide- or QD-coated waveguide sensors must be synthesized. We synthesized zinc stannate (Zn2SnO4 coated (Si,TiO2 waveguide sensors, and used OWLS to monitor the relative mass of the film over time. Films lost mass over time, though at different rates due to variation in fluid flow and its physical effect on removal of film material. The Pulsed Laser Deposition (PLD technique was used to deposit CdSe QD coatings on waveguides. Sensors exposed to pH 2 solution lost mass over time in an expected, roughly exponential manner. Sensors at pH 10, in contrast, were stable over time. Results were confirmed with atomic force microscopy imaging. Limiting factors in the use of OWLS in this manner include limitations on the annealing temperature that maybe used to synthesize the oxide film, and limitations on the thickness of the film to be studied. Nevertheless, the technique overcomes a number of difficulties in monitoring the quality of thin films in-situ in liquid environments.

  9. Survival of male Tengmalm’s owls increases with cover of old forest in the territory

    NARCIS (Netherlands)

    Hakkarainen, H.; Korpimäki, E.; Laaksonen, T.; Nikula, A.; Suorsa, P.

    2008-01-01

    The loss and fragmentation of forest habitats have been considered to pose a worldwide threat to the viability of forest-dwelling animals, especially to species that occupy old forests. We investigated whether the annual survival of sedentary male Tengmalm’s owls Aegolius funereus was associated

  10. Low frequency eardrum directionality in the barn owl induced by sound transmission through the interaural canal

    DEFF Research Database (Denmark)

    Kettler, Lutz; Christensen-Dalsgaard, Jakob; Larsen, Ole Næsbye

    2016-01-01

    . Significant sound transmission across the interaural canal occurred at low frequencies. The sound transmission induces considerable eardrum directionality in a narrow band from 1.5 to 3.5 kHz. This is below the frequency range used by the barn owl for locating prey, but may conceivably be used for locating...

  11. Practical querying of temporal data via OWL 2 QL and SQL: 2011

    CSIR Research Space (South Africa)

    Klarman, S

    2013-12-01

    Full Text Available We develop a practical approach to querying temporal data stored in temporal SQL:2011 databases through the semantic layer of OWL 2 QL ontologies. An interval-based temporal query language (TQL), which we propose for this task, is defined via...

  12. Ecology and conservation of the cactus ferruginous pygmy-owl in Arizona

    Science.gov (United States)

    Jean-Luc E. Cartron; Deborah M. Finch

    2000-01-01

    This report is the result of a cooperative effort by the Rocky Mountain Research Station and the USDA Forest Service Region 3, with participation by the Arizona Game and Fish Department and the Bureau of Land Management. It assesses the state of knowledge related to the conservation status of the cactus ferruginous pygmy-owl in Arizona. The population decline of this...

  13. Chapter 6: Research needs for the conservation of the cactus ferruginous pygmy-owl in Arizona

    Science.gov (United States)

    Jean-Luc E. Cartron; W. Scott Richardson; Deborah M. Finch; David J. Krueper

    2000-01-01

    In this chapter, we describe research needs for the conservation of the cactus ferruginous pygmy-owl (Glaucidium brasilianum cactorum) in Arizona. Estimates of population size, structure, and dynamics, as well as demographic data, are needed for the recovery team to formulate sound population objectives. Habitat loss due to residential development...

  14. Comparison of reasoners for large ontologies in the OWL 2 EL profile

    NARCIS (Netherlands)

    Dentler, K.; Cornet, R.; ten Teije, A.C.M.; de Keizer, N.F.

    2011-01-01

    This paper provides a survey to and a comparison of state-of-the-art Semantic Web reasoners that succeed in classifying large ontologies expressed in the tractable OWL 2 EL profile. Reasoners are characterized along several dimensions: The first dimension comprises underlying reasoning

  15. High population density of Little Owl (Athene noctua) in Hortobagy National Park, Hungary, Central Europe

    Czech Academy of Sciences Publication Activity Database

    Šálek, Martin; Chrenková, M.; Kipson, M.

    2013-01-01

    Roč. 61, č. 1 (2013), s. 165-169 ISSN 1505-2249 Institutional support: RVO:68081766 Keywords : Little Owl * population density * distribution * breeding places * Hortobagy National Park * Hungary Subject RIV: EH - Ecology, Behaviour Impact factor: 0.554, year: 2013

  16. Novel molecular markers differentiate Oncorhynchus mykiss (rainbow trout and steelhead) and the O. clarki (cutthroat trout) subspecies

    Science.gov (United States)

    Ostberg, C.O.; Rodriguez, R.J.

    2002-01-01

    A suite of 26 PCR-based markers was developed that differentiates rainbow (Oncorhynchus mykiss) and coastal cutthroat trout (O. clarki clarki). The markers also differentiated rainbow from other cutthroat trout subspecies (O. clarki), and several of the markers differentiated between cutthroat trout subspecies. This system has numerous positive attributes, including: nonlethal sampling, high species-specificity and products that are easily identified and scored using agarose gel electrophoresis. The methodology described for developing the markers can be applied to virtually any system in which numerous markers are desired for identifying or differentiating species or subspecies.

  17. Comparative genomic characterization of Francisella tularensis strains belonging to low and high virulence subspecies.

    Directory of Open Access Journals (Sweden)

    Mia D Champion

    2009-05-01

    Full Text Available Tularemia is a geographically widespread, severely debilitating, and occasionally lethal disease in humans. It is caused by infection by a gram-negative bacterium, Francisella tularensis. In order to better understand its potency as an etiological agent as well as its potential as a biological weapon, we have completed draft assemblies and report the first complete genomic characterization of five strains belonging to the following different Francisella subspecies (subsp.: the F. tularensis subsp. tularensis FSC033, F. tularensis subsp. holarctica FSC257 and FSC022, and F. tularensis subsp. novicida GA99-3548 and GA99-3549 strains. Here, we report the sequencing of these strains and comparative genomic analysis with recently available public Francisella sequences, including the rare F. tularensis subsp. mediasiatica FSC147 strain isolate from the Central Asian Region. We report evidence for the occurrence of large-scale rearrangement events in strains of the holarctica subspecies, supporting previous proposals that further phylogenetic subdivisions of the Type B clade are likely. We also find a significant enrichment of disrupted or absent ORFs proximal to predicted breakpoints in the FSC022 strain, including a genetic component of the Type I restriction-modification defense system. Many of the pseudogenes identified are also disrupted in the closely related rarely human pathogenic F. tularensis subsp. mediasiatica FSC147 strain, including modulator of drug activity B (mdaB (FTT0961, which encodes a known NADPH quinone reductase involved in oxidative stress resistance. We have also identified genes exhibiting sequence similarity to effectors of the Type III (T3SS and components of the Type IV secretion systems (T4SS. One of the genes, msrA2 (FTT1797c, is disrupted in F. tularensis subsp. mediasiatica and has recently been shown to mediate bacterial pathogen survival in host organisms. Our findings suggest that in addition to the duplication of

  18. Spotting psychopaths using technology.

    Science.gov (United States)

    Hulbert, Sarah; Adeli, Hojjat

    2015-01-01

    For the past three and a half decades, the Psychopathy Checklist-Revised (PCL-R) and the self-report Psychopathic Personality Inventory-Revised (PPI-R) have been the standard measures for the diagnosis of psychopathy. Technological approaches can enhance these diagnostic methodologies. The purpose of this paper is to present a state-of-the-art review of various technological approaches for spotting psychopathy, such as electroencephalogram (EEG), magnetic resonance imaging (MRI), functional MRI (fMRI), transcranial magnetic stimulation (TMS), and other measures. Results of EEG event-related potential (ERP) experiments support the theory that impaired amygdala function may be responsible for abnormal fear processing in psychopathy, which can ultimately manifest as psychopathic traits, as outlined by the PCL-R or PPI-R. Imaging studies, in general, point to reduced fear processing capabilities in psychopathic individuals. While the human element, introduced through researcher/participant interactions, can be argued as unequivocally necessary for diagnosis, these purely objective technological approaches have proven to be useful in conjunction with the subjective interviewing and questionnaire methods for differentiating psychopaths from non-psychopaths. Furthermore, these technologies are more robust than behavioral measures, which have been shown to fail.

  19. Moonstruck primates: owl monkeys (Aotus need moonlight for nocturnal activity in their natural environment.

    Directory of Open Access Journals (Sweden)

    Eduardo Fernández-Duque

    2010-09-01

    Full Text Available Primates show activity patterns ranging from nocturnality to diurnality, with a few species showing activity both during day and night. Among anthropoids (monkeys, apes and humans, nocturnality is only present in the Central and South American owl monkey genus Aotus. Unlike other tropical Aotus species, the Azara's owl monkeys (A. azarai of the subtropics have switched their activity pattern from strict nocturnality to one that also includes regular diurnal activity. Harsher climate, food availability, and the lack of predators or diurnal competitors, have all been proposed as factors favoring evolutionary switches in primate activity patterns. However, the observational nature of most field studies has limited an understanding of the mechanisms responsible for this switch in activity patterns. The goal of our study was to evaluate the hypothesis that masking, namely the stimulatory and/or inhibitory/disinhibitory effects of environmental factors on synchronized circadian locomotor activity, is a key determinant of the unusual activity pattern of Azara's owl monkeys. We use continuous long-term (6-18 months 5-min-binned activity records obtained with actimeter collars fitted to wild owl monkeys (n =  10 individuals to show that this different pattern results from strong masking of activity by the inhibiting and enhancing effects of ambient luminance and temperature. Conclusive evidence for the direct masking effect of light is provided by data showing that locomotor activity was almost completely inhibited when moonlight was shadowed during three lunar eclipses. Temperature also negatively masked locomotor activity, and this masking was manifested even under optimal light conditions. Our results highlight the importance of the masking of circadian rhythmicity as a determinant of nocturnality in wild owl monkeys and suggest that the stimulatory effects of dim light in nocturnal primates may have been selected as an adaptive response to

  20. Spot Welding of Honeycomb Structures

    Science.gov (United States)

    Cohal, V.

    2017-08-01

    Honeycomb structures are used to prepare meals water jet cutting machines for textile. These honeycomb structures are made of stainless steel sheet thickness of 0.1-0.2 mm. Corrugated sheet metal strips are between two gears with special tooth profile. Hexagonal cells for obtaining these strips are welded points between them. Spot welding device is three electrodes in the upper part, which carries three welding points across the width of the strip of corrugated sheet metal. Spot welding device filled with press and advance mechanisms. The paper presents the values of the regime for spot welding.

  1. Event review: 1st Annual Outdoors Without Limits (OWL knap-in, Comer, Georgia, U.S.A.

    Directory of Open Access Journals (Sweden)

    Michael James Miller

    2014-09-01

    Full Text Available In June of 2014, Outdoors Without Limits (OWL, a national non-profit organization that promotes awareness and teamwork between disabled and non-disabled individuals, sponsored their first knap-in and primitive skills gathering.

  2. Staphylococcus cohnii subspecies: Staphylococcus cohnii subsp. cohnii subsp. nov. and Staphylococcus cohnii subsp. urealyticum subsp. nov.

    Science.gov (United States)

    Kloos, W E; Wolfshohl, J F

    1991-04-01

    Two major subspecies of Staphylococcus cohnii, namely S. cohnii subsp. cohnii, from humans, and S. cohnii subsp. urealyticum, from humans and other primates, are described on the basis of a study of 14 to 25 strains and 18 to 33 strains, respectively. DNA-DNA hybridization studies conducted in our laboratory in 1983 (W. E. Kloos and J. F. Wolfshohl, Curr. Microbiol. 8:115-121, 1983) demonstrated that strains representing the different subspecies were significantly divergent. S. cohnii subsp. urealyticum can be distinguished from S. cohnii subsp. cohnii on the basis of its greater colony size; pigmentation; positive urease, beta-glucuronidase, and beta-galactosidase activities; delayed alkaline phosphatase activity; ability to produce acid aerobically from alpha-lactose; and fatty acid profile. The type strain of S. cohnii subsp. cohnii is ATCC 29974, the designated type strain of S. cohnii Schleifer and Kloos 1975b, 55. The type strain of S. cohnii subsp. urealyticum is ATCC 49330.

  3. Full genome sequence of a Danish isolate of Mycobacterium avium subspecies paratuberculosis, strain Ejlskov2007

    DEFF Research Database (Denmark)

    Afzal, Mamuna; Abidi, Soad; Mikkelsen, Heidi

    We have sequenced a Danish isolate of Mycobacterium avium subspecies paratuberculosis, strain Ejlskov2007. The strain was isolated from faecal material of a 48 month old second parity Danish Holstein cow, with clinical symptoms of chronic diarrhoea and emaciation. The cultures were grown on Löwen......We have sequenced a Danish isolate of Mycobacterium avium subspecies paratuberculosis, strain Ejlskov2007. The strain was isolated from faecal material of a 48 month old second parity Danish Holstein cow, with clinical symptoms of chronic diarrhoea and emaciation. The cultures were grown......, consisting of 4317 unique gene families. Comparison with M. avium paratuberculosis strain K10 revealed only 3436 genes in common (~70%). We have used GenomeAtlases to show conserved (and unique) regions along the Ejlskov2007 chromosome, compared to 2 other Mycobacterium avium sequenced genomes. Pan......-genome analyses of the sequenced Mycobacterium genomes reveal a surprisingly open and diverse set of genes for this bacterial genera....

  4. Inference of purifying and positive selection in three subspecies of chimpanzees (Pan troglodytes) from exome sequencing

    DEFF Research Database (Denmark)

    Bataillon, Thomas; Duan, Jinjie; Hvilsom, Christina

    2015-01-01

    of recent gene flow from Western into Eastern chimpanzees. The striking contrast in X-linked vs. autosomal polymorphism and divergence previously reported in Central chimpanzees is also found in Eastern and Western chimpanzees. We show that the direction of selection (DoS) statistic exhibits a strong non......-monotonic relationship with the strength of purifying selection S, making it inappropriate for estimating S. We instead use counts in synonymous vs. non-synonymous frequency classes to infer the distribution of S coefficients acting on non-synonymous mutations in each subspecies. The strength of purifying selection we...... infer is congruent with the differences in effective sizes of each subspecies: Central chimpanzees are undergoing the strongest purifying selection followed by Eastern and Western chimpanzees. Coding indels show stronger selection against indels changing the reading frame than observed in human...

  5. Evaluation of a PCR assay for identification and differentiation of Campylobacter fetus subspecies

    DEFF Research Database (Denmark)

    Hum, S.; Quinn, K.; Brunner, J.

    1997-01-01

    methods were attributed to methodological differences used in various laboratories. Conclusion Our results indicate that misidentification of C fetus in routine diagnostic laboratories may be relatively common. The PCR assay evaluated gave rapid and reproducible results and is thus a valuable adjunctive......Objective To evaluate a polymerase chain reaction assay for identification of Campylobacter fetus and differentiation of the defined subspecies. Design Characterisation of bacterial strains by traditional phenotyping, polymerase chain reaction, a probabilistic identification scheme...... by traditional phenotypic methods and the PCR assay was found to be 80.8%. The polymerase chain reaction proved to be a reliable technique for the species and subspecies identification of C fetus; equivocal results were obtained in only two instances. Initial misidentifications by conventional phenotyping...

  6. Morphometric characterisation of wing feathers of the barn owl Tyto alba pratincola and the pigeon Columba livia

    Directory of Open Access Journals (Sweden)

    Klaas Michael

    2007-11-01

    Full Text Available Abstract Background Owls are known for their silent flight. Even though there is some information available on the mechanisms that lead to a reduction of noise emission, neither the morphological basis, nor the biological mechanisms of the owl's silent flight are known. Therefore, we have initiated a systematic analysis of wing morphology in both a specialist, the barn owl, and a generalist, the pigeon. This report presents a comparison between the feathers of the barn owl and the pigeon and emphasise the specific characteristics of the owl's feathers on macroscopic and microscopic level. An understanding of the features and mechanisms underlying this silent flight might eventually be employed for aerodynamic purposes and lead to a new wing design in modern aircrafts. Results A variety of different feathers (six remiges and six coverts, taken from several specimen in either species, were investigated. Quantitative analysis of digital images and scanning electron microscopy were used for a morphometric characterisation. Although both species have comparable body weights, barn owl feathers were in general larger than pigeon feathers. For both species, the depth and the area of the outer vanes of the remiges were typically smaller than those of the inner vanes. This difference was more pronounced in the barn owl than in the pigeon. Owl feathers also had lesser radiates, longer pennula, and were more translucent than pigeon feathers. The two species achieved smooth edges and regular surfaces of the vanes by different construction principles: while the angles of attachment to the rachis and the length of the barbs was nearly constant for the barn owl, these parameters varied in the pigeon. We also present a quantitative description of several characteristic features of barn owl feathers, e.g., the serrations at the leading edge of the wing, the fringes at the edges of each feather, and the velvet-like dorsal surface. Conclusion The quantitative

  7. 77 FR 56858 - Endangered and Threatened Wildlife and Plants; Draft Recovery Plan for Four Subspecies of Island Fox

    Science.gov (United States)

    2012-09-14

    ... particular species. Species' History We listed four of the six subspecies of island fox endemic to the... consistent with long-term viability; and 2. Land managers are able to respond in a timely fashion to...

  8. Activation of persistent Streptococcus equi subspecies zooepidemicus in mares with subclinical endometritis

    DEFF Research Database (Denmark)

    Petersen, Morten Rønn; Skive, Bolette; Christoffersen, Mette

    2015-01-01

    Endometritis in horses caused by Streptococcus equi subspecies zooepidemicus (S. zooepidemicus) may be underdiagnosed due to traditional diagnostic methods lacking sensitivity and specificity. We serendipitously identified a bacterial growth medium (bActivate) that appeared capable of inducing...

  9. Association of staphylococcus cohnii subspecies urealyticum infection with recurrence of renal staghorn stone

    OpenAIRE

    Shahandeh, Zahra; Shafi, Hamid; Sadighian, Farahnaz

    2015-01-01

    Background: Stphylococcus cohnii is an organism of coagulase negative species which is considered as normal flora. However, it has been isolated from urinary tract infections and surgical prostheses but its relation with staghorn stones has not been reported, yet. Case Presentation: A 50-years-old woman presented with left renal staghorn stone in June 2014. She had bilateral staghorn stones 7 years ago. Staphylococcus cohnii subspecies urealyticum were detected from a removed stone. After 7 y...

  10. MORPHOLOGICAL AND ANATOMICAL STUDY ON ENDEMIC CROCUS OLIVIERI GAY SUBSP. ISTANBULENSIS MATHEW SUBSPECIES (IRIDACEAE

    Directory of Open Access Journals (Sweden)

    Kadriye Yetişen

    2013-02-01

    Full Text Available In this study, morphological and anatomical properties of Crocus olivieri Gay subsp. istanbulensis Mathew were investigated. Cross-sections of root, scape and leaf parts of the plant were examined anddemonstrated by photographs. Most of the anatomical properties are similar to the other member of Iridaceae family. Sclerenchyma groups were observed around to leaf vascular bundle. Morphological and anatomical findings compared with other two subspecies of Crocus olivieri.

  11. Evidence for Bergmann's Rule and Not Allopatric Subspeciation in the Threatened Kaka (Nestor meridionalis).

    Science.gov (United States)

    Dussex, Nic; Sainsbury, James; Moorhouse, Ron; Jamieson, Ian G; Robertson, Bruce C

    2015-01-01

    Species of conservation concern characterized by small and declining populations greatly benefit from proactive management approaches such as population translocations. Because they often show intra-specific genetic and phenotypic variation, which can result from drift or differential selective pressures between habitats, understanding the distribution of such variation and its underlying processes is a prerequisite to develop effective management guidelines. Indeed, translocations among genetically differentiated populations potentially locally adapted are discouraged in order to avoid outbreeding depression, while translocations among populations characterized by high gene flow with no evidence for local adaptation are encouraged. Here, we first test whether 2 recognized subspecies, the North Island kaka (Nestor meridionalis septentrionalis) and South Island kaka (Nestor meridionalis meridionalis) of New Zealand fit a scenario of allopatric subspeciation following the separation of the North and South Islands at the end of the Pleistocene using 1 mtDNA (n = 96) and 9 microsatellite markers (n = 126). We then test whether morphological differences among the 2 subspecies support a pattern of local adaptation, comparing phenotypic divergence (P ST) and the level of divergence by drift alone (F ST) among populations. We find little population structure between islands, ruling out allopatric subspeciation in kaka. Further, P ST exceeds F ST, supporting an adaptive latitudinal size cline consistent with Bergmann's rule. These results therefore suggest that using neutral genetic diversity alone can be misleading when identifying management units and that the nature of phenotypic variation should be considered in translocations efforts. We finally discuss North and South Island management units but suggest that cross-island translocation be allowed. © The American Genetic Association. 2015. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

  12. Presence and distribution of two sub-species of Eurema agave (Lepidoptera, Pieridae in Costa Rica

    Directory of Open Access Journals (Sweden)

    Jim Cordoba-Alfaro

    2011-06-01

    Full Text Available Austin (1992 reported Eurema a. agave (Cramer 1775 to the Caribbean of Costa Rica. However, he actually had found E. a. millerorum, described by Bousquets & Luis-Martinez (1987 for the Caribbean of Mexico. The presence of Eurema a. agave is confirmed on this paper with information of specimens collected in the Pacific and Atlantic slopes of Costa Rica. Aspects on distribution of both subspecies are included.

  13. A new subspecies of Celastrus (Celastraceae from the Palni hills of South India

    Directory of Open Access Journals (Sweden)

    S. John Britto

    2017-08-01

    Full Text Available Celastrus paniculatus Willd. ssp. angladeanus S.J. Britto, B. Mani and S. Thomas new subspecies from the Palni hills, Western Ghats of Tamilnadu, South India is described and illustrated. The new ssp. is similar to Celastrus paniculatus ssp. aggregatus but differs in flame-coloured branchlets, terminal, erect and stiff panicles exceeding leaves, prominent gibbous and oblique capsules, flowers polygamous but predominantly pistillate and 3-seeded capsules.

  14. Research and in situ conservation of owl monkeys enhances environmental law enforcement at the Colombian-Peruvian border

    OpenAIRE

    Maldonado, Angela M; Peck, Mika R

    2014-01-01

    This study reports on impacts of illegal trade in owl monkeys (Aotus nancymaae, A. vociferans) for the biomedical research market in the Colombian-Peruvian Amazonian border. Through freedom of information requests and interviews with hunters we found that 912 owl monkeys, including A. nancymaae captured in Peru, were trapped over a 3-month period in 2012 to supply a malaria research facility based in Leticia, Colombia, which had trapping permits for the use of only 800 A. vociferans annually ...

  15. Ecotype evolution in Glossina palpalis subspecies, major vectors of sleeping sickness.

    Directory of Open Access Journals (Sweden)

    Thierry De Meeûs

    2015-03-01

    Full Text Available The role of environmental factors in driving adaptive trajectories of living organisms is still being debated. This is even more important to understand when dealing with important neglected diseases and their vectors.In this paper, we analysed genetic divergence, computed from seven microsatellite loci, of 614 tsetse flies (Glossina palpalis gambiensis and Glossina palpalis palpalis, major vectors of animal and human trypanosomes from 28 sites of West and Central Africa. We found that the two subspecies are so divergent that they deserve the species status. Controlling for geographic and time distances that separate these samples, which have a significant effect, we found that G. p. gambiensis from different landscapes (Niayes of Senegal, savannah and coastal environments were significantly genetically different and thus represent different ecotypes or subspecies. We also confirm that G. p. palpalis from Ivory Coast, Cameroon and DRC are strongly divergent.These results provide an opportunity to examine whether new tsetse fly ecotypes might display different behaviour, dispersal patterns, host preferences and vectorial capacities. This work also urges a revision of taxonomic status of Glossina palpalis subspecies and highlights again how fast ecological divergence can be, especially in host-parasite-vector systems.

  16. Chimpanzee subspecies and ‘robust’ australopithecine holotypes, in the context of comments by Darwin

    Directory of Open Access Journals (Sweden)

    S. Prat

    2010-02-01

    Full Text Available On the basis of comparative anatomy (including chimpanzees, gorillas and other primates, Darwin1 suggested that Africa was the continent from which ‘progenitors’ of humankind evolved. Hominin fossils from this continent proved him correct. We present the results of morphometric analyses based on cranial data obtained from chimpanzee taxa currently recognised as distinct subspecies, namely Pan troglodytes troglodytes and Pan troglodytes schweinfurthii, as well as Pan paniscus (bonobo. Our objective was to use a morphometric technique2 to quantify the degree of similarity between pairs of specimens, in the context of a statistical (probabilistic definition of a species.3–5 Results obtained from great apes, including two subspecies of chimpanzee, were assessed in relation to same-scale comparisons between the holotypes of ‘robust’ australopithecine (Plio-Pleistocene hominin taxa which have traditionally been distinguished at a species level, notably Paranthropus robustus from South Africa, and Paranthropus (Australopithecus/ Zinjanthropus boisei from East Africa. The question arises as to whether the holotypes of these two taxa, TM 1517 from Kromdraai6 and OH 5 from Olduvai,7 respectively, are different at the subspecies rather than at the species level.

  17. Mitogenomic phylogenetics of fin whales (Balaenoptera physalus spp.: genetic evidence for revision of subspecies.

    Directory of Open Access Journals (Sweden)

    Frederick I Archer

    Full Text Available There are three described subspecies of fin whales (Balaenoptera physalus: B. p. physalus Linnaeus, 1758 in the Northern Hemisphere, B. p. quoyi Fischer, 1829 in the Southern Hemisphere, and a recently described pygmy form, B. p. patachonica Burmeister, 1865. The discrete distribution in the North Pacific and North Atlantic raises the question of whether a single Northern Hemisphere subspecies is valid. We assess phylogenetic patterns using ~16 K base pairs of the complete mitogenome for 154 fin whales from the North Pacific, North Atlantic--including the Mediterranean Sea--and Southern Hemisphere. A Bayesian tree of the resulting 136 haplotypes revealed several well-supported clades representing each ocean basin, with no haplotypes shared among ocean basins. The North Atlantic haplotypes (n = 12 form a sister clade to those from the Southern Hemisphere (n = 42. The estimated time to most recent common ancestor (TMRCA for this Atlantic/Southern Hemisphere clade and 81 of the 97 samples from the North Pacific was approximately 2 Ma. 14 of the remaining North Pacific samples formed a well-supported clade within the Southern Hemisphere. The TMRCA for this node suggests that at least one female from the Southern Hemisphere immigrated to the North Pacific approximately 0.37 Ma. These results provide strong evidence that North Pacific and North Atlantic fin whales should not be considered the same subspecies, and suggest the need for revision of the global taxonomy of the species.

  18. Infection with Photobacterium damselae subspecies damselae and Vibrio harveyi in snapper, Pagrus auratus with bloat.

    Science.gov (United States)

    Stephens, F J; Raidal, S R; Buller, N; Jones, B

    2006-05-01

    To diagnose the cause of chronic, low mortality associated with bloat in tanks of snapper at an aquaculture facility. A clinical, pathological and microbiological investigation into the cause of a low number of ongoing mortalities associated with bloat in snapper at an aquaculture facility is outlined. Necropsy, histology, microbiology and a comparison of haematology and water analysis from affected and unaffected fish and holding tanks, respectively were conducted. Affected moribund fish were found in lateral or dorsal recumbency floating on the water surface within 24 hours of death. Photobacterium damselae subspecies damselae was isolated from intestinal contents and Vibrio harveyi from the blood of affected fish and both were isolated from culture water. Both V harveyi and P damselae subspecies damselae isolates were sensitive to tetracycline, ciprofloxacin and sulphamethoxazole plus trimethoprim. Environmental parameters such as pH and dissolved oxygen were similar in tanks of affected and unaffected fish. Affected fish had gas distended swimbladders, anaemia, and the intestines were diffusely distended with a clear, pale yellowish fluid. Livers were mottled tan and green in a zonal pattern. Histologically the intestines of fish from tanks suffering mortality had a moderate granulocytic enteritis with oedema and infiltrations with eosinophilic granule cells that were also present as an infiltrate in the gills. There were elevated numbers of melanomacrophage centres and haemosiderin deposits in the spleen, kidney and liver of affected fish. Vibrio harveyi and Photobacterium damselae subspecies damselae infection should be recognised as potential pathogens of snapper held in water of less than optimal quality.

  19. Spatiotemporal variation in the reproductive ecology of two parapatric subspecies of Oenothera cespitosa (Onagraceae).

    Science.gov (United States)

    Artz, Derek R; Villagra, Cristian A; Raguso, Robert A

    2010-09-01

    • Flowering plants that rely on pollinators for most of their reproduction may experience unpredictable and inconsistent availability of effective pollinators throughout their reproductive lifetime. We investigated the reproductive ecology of two subspecies of the tufted evening primrose, Oenothera cespitosa, which occupy geographically and edaphically distinct habitats in western North America: O. cespitosa subsp. navajoensis inhabits sandstone soils on open sites or rocky slopes in the Colorado Plateau and O. cespitosa subsp. cespitosa grows in clay soils on talus slopes and exposed rocky ridges in the western Great Plains and northern Rocky Mountains of the United States. • Pollen augmentation and selfing experiments, floral visitor observations, and single-visit effectiveness experiments were conducted over 4 years to examine the breeding system and spatiotemporal variation in pollinator behavior, assemblage, and abundance at different populations for each subspecies. • Both subspecies of O. cespitosa were self-incompatible and pollen-limited, suggesting that the relative abundance, effectiveness, and movement patterns of different insects as pollinators influenced the quality and quantity of seed production in these plants. Medium-sized vespertine hawkmoths (Hyles lineata, Sphinx vashti) were effective pollinators when present, as were large matinal bees (Anthophora affabilis, A. dammersi, Xylocopa tabaniformis androleuca), whereas small oligolectic Lasioglossum bees primarily functioned as pollen thieves in the evening and morning. • These findings highlight the importance of variability of pollinator composition and abundance in the evolution of plant breeding systems and reproductive success at varying spatial and temporal scales.

  20. A morphological review of subspecies of the Asian box turtle, Cuora amboinensis (Testudines, Geomydidae)

    Science.gov (United States)

    Ernst, Carl H.; Laemmerzahl, Arndt F.; Lovich, Jeffrey E.

    2016-01-01

    The turtle Cuora amboinensis has an extensive distribution covering most of southern mainland Asia, Indonesia, and extending to the Philippine Islands. Unlike many species, C. amboinensis occurs on both sides of Wallace's Line separating Asian and Australian flora and fauna. Four subspecies are currently recognized; Cuora a. kamaroma (southern continental Asia, Java and the northern Philippines [introduced]), C. a. lineata (Kachin Province, Myanmar [Burma] and adjacent Yunnan Province, China), C. a. couro (Sumatra, Java, Sumbawa, and adjacent smaller Indonesian islands); and C. a. amboinensis (Moluccas, Sulawesi, Philippines). Five pattern and 33 morphological characters were examined for variation in 691 individuals from throughout the species' range. Our analyses suggest that only two presently recognized subspecies are valid: amboinensis andkamaroma. Neither couro nor lineata are supported by our analysis. We recommend that C. a. couroshould be synonymized with the species C. amboinensis and C. a. lineata with the subspecies C. a. kamaroma.

  1. Great gray owls (Strix nebulosa) in Yosemite National Park: on the importance of food, forest structure, and human disturbance

    Science.gov (United States)

    van Riper, Charles; Fontaine, Joseph J.; van Wagtendonk, Jan W.

    2013-01-01

    We studied great gray owls (Strix nebulosa Forster) in Yosemite National Park, California, measuring variables that could potentially influence patterns of occurrence and conservation of this stateendangered species. We found that owl presence was closely tied to habitat (red fir (Abies magnified A. Murray) and the abundance of meadows), prey, and snags across the landscape. We also found that indicators of human recreational activities negatively influenced owl distribution and habitat use. Great gray owls appear to prefer mid-elevation red fir forest with meadows that are drier and more productive in terms of small mammal populations. That these areas also have the highest human activity presents a paradox, both for individual owls and for the future conservation and management of this California endangered species. The extent to which human recreation in natural areas affects animal behavior, species distribution, and productivity is a growing issue in natural area management. We present information that will allow land managers to better understand how existing natural resources, coupled with human recreation, influence the distribution and habitat use of the great gray owl.

  2. What do predators really want? The role of gerbil energetic state in determining prey choice by Barn Owls.

    Science.gov (United States)

    Embar, Keren; Mukherjee, Shomen; Kotler, Burt P

    2014-02-01

    In predator-prey foraging games, predators should respond to variations in prey state. The value of energy for the prey changes depending on season. Prey in a low energetic state and/or in a reproductive state should invest more in foraging and tolerate higher predation risk. This should make the prey more catchable, and thereby, more preferable to predators. We ask, can predators respond to prey state? How does season and state affect the foraging game from the predator's perspective? By letting owls choose between gerbils whose states we experimentally manipulated, we could demonstrate predator sensitivity to prey state and predator selectivity that otherwise may be obscured by the foraging game. During spring, owls invested more time and attacks in the patch with well-fed gerbils. During summer, owls attacked both patches equally, yet allocated more time to the patch with hungry gerbils. Energetic state per se does not seem to be the basis of owl choice. The owls strongly responded to these subtle differences. In summer, gerbils managed their behavior primarily for survival, and the owls equalized capture opportunities by attacking both patches equally.

  3. Building a DNA barcode reference library for the true butterflies (Lepidoptera) of Peninsula Malaysia: what about the subspecies?

    Science.gov (United States)

    Wilson, John-James; Sing, Kong-Wah; Sofian-Azirun, Mohd

    2013-01-01

    The objective of this study was to build a DNA barcode reference library for the true butterflies of Peninsula Malaysia and assess the value of attaching subspecies names to DNA barcode records. A new DNA barcode library was constructed with butterflies from the Museum of Zoology, University of Malaya collection. The library was analysed in conjunction with publicly available DNA barcodes from other Asia-Pacific localities to test the ability of the DNA barcodes to discriminate species and subspecies. Analyses confirmed the capacity of the new DNA barcode reference library to distinguish the vast majority of species (92%) and revealed that most subspecies possessed unique DNA barcodes (84%). In some cases conspecific subspecies exhibited genetic distances between their DNA barcodes that are typically seen between species, and these were often taxa that have previously been regarded as full species. Subspecies designations as shorthand for geographically and morphologically differentiated groups provide a useful heuristic for assessing how such groups correlate with clustering patterns of DNA barcodes, especially as the number of DNA barcodes per species in reference libraries increases. Our study demonstrates the value in attaching subspecies names to DNA barcode records as they can reveal a history of taxonomic concepts and expose important units of biodiversity.

  4. Building a DNA Barcode Reference Library for the True Butterflies (Lepidoptera) of Peninsula Malaysia: What about the Subspecies?

    Science.gov (United States)

    Wilson, John-James; Sing, Kong-Wah; Sofian-Azirun, Mohd

    2013-01-01

    The objective of this study was to build a DNA barcode reference library for the true butterflies of Peninsula Malaysia and assess the value of attaching subspecies names to DNA barcode records. A new DNA barcode library was constructed with butterflies from the Museum of Zoology, University of Malaya collection. The library was analysed in conjunction with publicly available DNA barcodes from other Asia-Pacific localities to test the ability of the DNA barcodes to discriminate species and subspecies. Analyses confirmed the capacity of the new DNA barcode reference library to distinguish the vast majority of species (92%) and revealed that most subspecies possessed unique DNA barcodes (84%). In some cases conspecific subspecies exhibited genetic distances between their DNA barcodes that are typically seen between species, and these were often taxa that have previously been regarded as full species. Subspecies designations as shorthand for geographically and morphologically differentiated groups provide a useful heuristic for assessing how such groups correlate with clustering patterns of DNA barcodes, especially as the number of DNA barcodes per species in reference libraries increases. Our study demonstrates the value in attaching subspecies names to DNA barcode records as they can reveal a history of taxonomic concepts and expose important units of biodiversity. PMID:24282514

  5. Building a DNA barcode reference library for the true butterflies (Lepidoptera of Peninsula Malaysia: what about the subspecies?

    Directory of Open Access Journals (Sweden)

    John-James Wilson

    Full Text Available The objective of this study was to build a DNA barcode reference library for the true butterflies of Peninsula Malaysia and assess the value of attaching subspecies names to DNA barcode records. A new DNA barcode library was constructed with butterflies from the Museum of Zoology, University of Malaya collection. The library was analysed in conjunction with publicly available DNA barcodes from other Asia-Pacific localities to test the ability of the DNA barcodes to discriminate species and subspecies. Analyses confirmed the capacity of the new DNA barcode reference library to distinguish the vast majority of species (92% and revealed that most subspecies possessed unique DNA barcodes (84%. In some cases conspecific subspecies exhibited genetic distances between their DNA barcodes that are typically seen between species, and these were often taxa that have previously been regarded as full species. Subspecies designations as shorthand for geographically and morphologically differentiated groups provide a useful heuristic for assessing how such groups correlate with clustering patterns of DNA barcodes, especially as the number of DNA barcodes per species in reference libraries increases. Our study demonstrates the value in attaching subspecies names to DNA barcode records as they can reveal a history of taxonomic concepts and expose important units of biodiversity.

  6. Numerical optimisation in spot detector design

    NARCIS (Netherlands)

    van der Heijden, Ferdinand; Apperloo, W.; Spreeuwers, Lieuwe Jan

    1997-01-01

    Spots are image details resulting from objects, the projections of which are so small that the inner structure of these objects cannot be resolved from their image. Spot detectors are image operators aiming at the detection and localisation of spots in the image. Most spot detectors can be tuned

  7. 9 CFR 149.4 - Spot audit.

    Science.gov (United States)

    2010-01-01

    ... 9 Animals and Animal Products 1 2010-01-01 2010-01-01 false Spot audit. 149.4 Section 149.4... LIVESTOCK IMPROVEMENT VOLUNTARY TRICHINAE CERTIFICATION PROGRAM § 149.4 Spot audit. (a) In addition to regularly scheduled site audits, certified production sites will be subject to spot audits. (1) Random spot...

  8. On the origin of delta spots

    International Nuclear Information System (INIS)

    Tang, F.

    1983-01-01

    Mount Wilson sunspot drawings from 1966 through 1980 were used in conjunction with Hα filtergrams from Big Bear Solar Observatory to examine the origin of delta spots, spots with bipolar umbrae within one penumbra. Of the six cases we studied, five were formed by the union of non-paired spots. They are either shoved into one another by two neighboring growing bipoles or by a new spot born piggy-back style on an existing spot of opposite polarity. Proper motions of the growing spots take on curvilinear paths around one another to avoid a collision. This is the shear motion observed in delta spots (Tanaka, 1979). In the remaining case, the delta spot was formed by spots that emerged as a pair. Our findings indicate no intrinsic differences in the formation or the behavior between delta spots of normal magnetic configuration. (orig.)

  9. 40K, 137Cs, 90Sr, 238,239+240Pu and 241Am in mammals' skulls from owls' pellets and owl skeletons in Poland.

    Science.gov (United States)

    Gaca, Paweł; Mietelski, Jerzy W; Kitowski, Ignacy; Grabowska, Sylwia; Tomankiewicz, Ewa

    2005-01-01

    Skulls of small mammals belonging to two species of rodents and three species of insectivores collected in Eastern Poland were the subject of the present investigation. The skulls were separated from owl pellets. Activities of 40K, 137Cs, 90Sr, 238,239+240Pu and 241Am were determined by means of gamma spectrometry as well as liquid scintillation spectrometry or alpha spectrometry along with relevant radiochemical procedures. A detailed description of the procedures is provided. The research was supplied with the analysis of three skeletons of owls. No measurable difference between the skulls of rodents and insectivorous animals with regard to activity of any of the examined radionuclides was found. No accumulation effect in the owl skeletons was detected. Though measured activities of 137Cs and 40K for the skulls were of the same magnitude as those found previously for large wild herbivorous animals from typical locations in Poland, those for 90Sr were even lower than previously determined. A big difference was found for activities of plutonium and americium isotopes. Their mean activities were higher by an order of magnitude when compared to the examined previously values. The maximum 239+240Pu activity was equal to 97.5+/-7.7 mBq/kg, with 65% of it originating from global fallout. Relatively high content of transuranic elements found for rodents and insectivorous mammals seems to be unrelated to their feeding habits and should rather be attributed to the living conditions. It is suggested that small mammals, together with tiny soil particles present in mid-soil living tunnels, can inhale the transuranic elements.

  10. "To Thine Own Self Be True": Existentialism in Hamlet and The Blind Owl

    Directory of Open Access Journals (Sweden)

    Masoud Farahmandfar

    2015-04-01

    Full Text Available This article aims at exploring the key concepts of Existential thought in two masterpieces of the world literature, namely, William Shakespeare’s Hamlet and Sadeq Hedayat’s The Blind Owl (Buf-e Kur. Freedom, free will, authenticity, self-realization, self-becoming, and awareness of death are among the main concerns of both writers. Shakespeare depicts authenticity in the character of Hamlet, and it is in contrast to him that the reader finds many instances of inauthenticity. The Danish prince has no tolerance whatsoever for inauthentic or self-deceiving. The same thing is visible in The Blind Owl in which the narrator-protagonist feels himself above all the low, petty desires of mankind. All in all, both characters’ main challenge is to live authentically. Keywords: Existential philosophy, authenticity, angst, death, being, existence, self-realization

  11. Prey selection by the Barn Owl Tyto alba (Scopoli, 1769 in captivity

    Directory of Open Access Journals (Sweden)

    V. Vanitha

    2009-07-01

    Full Text Available We investigated prey selection of the Barn Owl Tyto alba under captive conditions where birds were allowed to choose among individuals of varying size from four field rodent species: Bandicota bengalensis, Millardia meltada, Tatera indica and Mus booduga. Owls showed little species preference and a tendency to favour the medium weight class in all prey species except M. booduga. Preference for body parts consumed varied according to prey size, ranging from the head alone in the large weight class to the entire body in the small weight class. Biochemical measurements showed that protein, carbohydrate and lipid levels were higher respectively in the brain, liver and muscles of all three species and weight classes studied. The preference for medium weight prey despite a lower nutrient content compared to large weight prey is attributed to a greater ease of capture.

  12. Bionic Design of Wind Turbine Blade Based on Long-Eared Owl's Airfoil.

    Science.gov (United States)

    Tian, Weijun; Yang, Zhen; Zhang, Qi; Wang, Jiyue; Li, Ming; Ma, Yi; Cong, Qian

    2017-01-01

    The main purpose of this paper is to demonstrate a bionic design for the airfoil of wind turbines inspired by the morphology of Long-eared Owl's wings. Glauert Model was adopted to design the standard blade and the bionic blade, respectively. Numerical analysis method was utilized to study the aerodynamic characteristics of the airfoils as well as the blades. Results show that the bionic airfoil inspired by the airfoil at the 50% aspect ratio of the Long-eared Owl's wing gives rise to a superior lift coefficient and stalling performance and thus can be beneficial to improving the performance of the wind turbine blade. Also, the efficiency of the bionic blade in wind turbine blades tests increases by 12% or above (up to 44%) compared to that of the standard blade. The reason lies in the bigger pressure difference between the upper and lower surface which can provide stronger lift.

  13. Determination of Gastrointestinal Transit Times in Barred Owls ( Strix varia ) by Contrast Fluoroscopy.

    Science.gov (United States)

    Doss, Grayson A; Williams, Jackie M; Mans, Christoph

    2017-06-01

    Contrast imaging studies are routinely performed in avian patients when an underlying abnormality of the gastrointestinal (GI) tract is suspected. Fluoroscopy offers several advantages over traditional radiography and can be performed in conscious animals with minimal stress and restraint. Although birds of prey are commonly encountered as patients, little is known about GI transit times and contrast imaging studies in these species, especially owls. Owls are commonly encountered in zoological, educational, and wildlife settings. In this study, 12 adult barred owls ( Strix varia ) were gavage fed a 30% weight-by-volume barium suspension (25 mL/kg body weight). Fluoroscopic exposures were recorded at 5, 15, 30, 60, 120, 180, 240, and 300 minutes after administration. Overall GI transit time and transit times of various GI organs were recorded. Median (interquartile range [IQR]) overall GI transit time was 60 minutes (IQR: 19-60 minutes) and ranged from 5-120 minutes. Ventricular and small intestinal contrast filling was rapid. Ventricular emptying was complete by a median of 60 minutes (IQR: 30-120 minutes; range: 30-240 minutes), whereas small intestinal emptying was not complete in 9/12 birds by 300 minutes. Median small intestinal contraction rate was 15 per minute (IQR: 13-16 minutes; range: 10-19 minutes). Median overall GI transit time in barred owls is more rapid than mean transit times reported for psittacine birds and red-tailed hawks ( Buteo jamaicensis ). Fluoroscopy is a safe, suitable method for investigating GI motility and transit in this species.

  14. Record of the Buff-fronted Owl (Aegolius harrisii in the Pampa Biome, southern Brazil

    Directory of Open Access Journals (Sweden)

    Marluci Müller Rebelato

    2011-02-01

    Full Text Available We present the second record of the Buff-fronted Owl (Aegolius harrisii in the Pampa Biome, South Brazil. On 17 January 2010 an adult male was found dead at the roadside along the BR-290, São Gabriel municipality, center-east of Rio Grande do Sul state. The specimen probably collided with a car when using the area for foraging. The record reported here agrees with the suggestion that A. harrisii can use disturbed and open areas.

  15. Transformation of standardized clinical models based on OWL technologies: from CEM to OpenEHR archetypes.

    Science.gov (United States)

    Legaz-García, María del Carmen; Menárguez-Tortosa, Marcos; Fernández-Breis, Jesualdo Tomás; Chute, Christopher G; Tao, Cui

    2015-05-01

    The semantic interoperability of electronic healthcare records (EHRs) systems is a major challenge in the medical informatics area. International initiatives pursue the use of semantically interoperable clinical models, and ontologies have frequently been used in semantic interoperability efforts. The objective of this paper is to propose a generic, ontology-based, flexible approach for supporting the automatic transformation of clinical models, which is illustrated for the transformation of Clinical Element Models (CEMs) into openEHR archetypes. Our transformation method exploits the fact that the information models of the most relevant EHR specifications are available in the Web Ontology Language (OWL). The transformation approach is based on defining mappings between those ontological structures. We propose a way in which CEM entities can be transformed into openEHR by using transformation templates and OWL as common representation formalism. The transformation architecture exploits the reasoning and inferencing capabilities of OWL technologies. We have devised a generic, flexible approach for the transformation of clinical models, implemented for the unidirectional transformation from CEM to openEHR, a series of reusable transformation templates, a proof-of-concept implementation, and a set of openEHR archetypes that validate the methodological approach. We have been able to transform CEM into archetypes in an automatic, flexible, reusable transformation approach that could be extended to other clinical model specifications. We exploit the potential of OWL technologies for supporting the transformation process. We believe that our approach could be useful for international efforts in the area of semantic interoperability of EHR systems. © The Author 2015. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

  16. Toxicokinetics and coagulopathy threshold of the rodenticide diphacinone in eastern screech-owls (Megascops asio)

    Science.gov (United States)

    Rattner, Barnett A.; Horak, K.E.; Lazarus, Rebecca S.; Goldade, D.A.; Johnston, J.J.

    2014-01-01

    In the United States, new regulations on second-generation anticoagulant rodenticides will likely be offset by expanded use of first-generation anticoagulant rodenticides. In the present study, eastern screech-owls (Megascops asio) were fed 10 µg diphacinone/g wet weight food for 7 d, and recovery was monitored over a 21-d postexposure period. By day 3 of exposure, diphacinone (DPN) was detected in liver (1.63 µg/g wet wt) and kidney (5.83 µg/g) and coagulopathy was apparent. By day 7, prothrombin time (PT) and Russell's viper venom time (RVVT) were prolonged, and some individuals were anemic. Upon termination of exposure, coagulopathy and anemia were resolved within 4 d, and residues decreased to <0.3 µg/g by day 7. Liver and kidney DPN elimination occurred in 2 phases (initial rapid loss, followed by slower loss rate), with overall half-lives of 11.7 d and 2.1 d, respectively. Prolonged PT and RVVT occurred in 10% of the exposed owls with liver DPN concentrations of 0.122 µg/g and 0.282 µg/g and in 90% of the owls with liver concentrations of 0.638 µg/g and 0.361 µg/g. These liver residue levels associated with coagulopathy fall in the range of values reported in raptor mortality incidents involving DPN. These tissue-based toxicity reference values for coagulopathy in adult screech-owls have application for interpreting nontarget mortality and assessing the hazard of DPN in rodent-control operations. Diphacinone exposure evokes toxicity in raptors within a matter of days; but once exposure is terminated, recovery of hemostasis occurs rapidly

  17. Burrowing Owl and Other Migratory Bird Mitigation for a Runway Construction Project at Edwards AFB

    OpenAIRE

    Hoehn, Amber L.; Hagan, Mark; Bratton, Mark

    2009-01-01

    Edwards Air Force Base (AFB) scheduled the construction of a runway in the spring of 2007. The runway would be in an area that contained migratory birds and their habitat. The construction project would be near Edwards AFB main runway and had the potential not only to impact species protected under the Migratory Bird Treaty Act (MBTA), including the burrowing owl (Athene cunicularia), but also to increase bird and wildlife–aircraft strike hazards in the active flightline areas. To discourage ...

  18. Validation of the openEHR archetype library by using OWL reasoning.

    Science.gov (United States)

    Menárguez-Tortosa, Marcos; Fernández-Breis, Jesualdo Tomás

    2011-01-01

    Electronic Health Record architectures based on the dual model architecture use archetypes for representing clinical knowledge. Therefore, ensuring their correctness and consistency is a fundamental research goal. In this work, we explore how an approach based on OWL technologies can be used for such purpose. This method has been applied to the openEHR archetype repository, which is the largest available one nowadays. The results of this validation are also reported in this study.

  19. Diet of the Barn Owl (Tyto alba in Ocoyoacac, Estado de Mexico

    Directory of Open Access Journals (Sweden)

    Alvaro González-Calderón

    2017-10-01

    Full Text Available I studied the feeding habits of the Barn Owl (Tyto alba Strigiformes in Ocoyoacac, State of Mexico (Mexico in 2012. On such occasion, its diet was analyzed based on the description of the mass of undigested parts of preys in 732 pellets collected. For such description I resorted to Margalef, Simpson, Shannon-Wiener and Pielou diversity index showing the diversity of preys on which the Barn Owls fed. Based on Levin’s standardized trophic niche index the food niche breadth was estimated as well as the correlation between pellet dimensions and the number of eaten preys. Small mammals were the most frequent source of food, followed by arthropods and birds. The dominance of small mammals was relatively low (λ = 0.20. Rattus rattus was the species most frequently consumed, followed by four other rodent species associated with an abundant frequency of consumption (Microtus mexicanus, Reithrodontomys microdon, R. megalotis and Peromyscus maniculatus. Shannon-Wiener index value (H’ = 1.85 and Levin’s standardized trophic breadth index (Bst = 0.42 showed a relatively low uniformity and a selective tendency in the consumption of small mammals. The diet of the Barn Owl showed that the consumption of arthropods was relevant, including arachnids. A selective tendency was observed in the consumption of birds. The significant correlations between the dimensions of the pellets with the number of preys consumed were discussed. The results show that the Barn Owl plays an important role in the biological control of native and non-native rodents of the region.

  20. Poisson's spot and Gouy phase

    Science.gov (United States)

    da Paz, I. G.; Soldati, Rodolfo; Cabral, L. A.; de Oliveira, J. G. G.; Sampaio, Marcos

    2016-12-01

    Recently there have been experimental results on Poisson spot matter-wave interferometry followed by theoretical models describing the relative importance of the wave and particle behaviors for the phenomenon. We propose an analytical theoretical model for Poisson's spot with matter waves based on the Babinet principle, in which we use the results for free propagation and single-slit diffraction. We take into account effects of loss of coherence and finite detection area using the propagator for a quantum particle interacting with an environment. We observe that the matter-wave Gouy phase plays a role in the existence of the central peak and thus corroborates the predominantly wavelike character of the Poisson's spot. Our model shows remarkable agreement with the experimental data for deuterium (D2) molecules.

  1. Threatened and endangered subspecies with vulnerable ecological traits also have high susceptibility to sea level rise and habitat fragmentation.

    Directory of Open Access Journals (Sweden)

    Allison M Benscoter

    Full Text Available The presence of multiple interacting threats to biodiversity and the increasing rate of species extinction make it critical to prioritize management efforts on species and communities that maximize conservation success. We implemented a multi-step approach that coupled vulnerability assessments evaluating threats to Florida taxa such as climate change, sea-level rise, and habitat fragmentation with in-depth literature surveys of taxon-specific ecological traits. The vulnerability, adaptive capacity, and ecological traits of 12 threatened and endangered subspecies were compared to non-listed subspecies of the same parent species. Overall, the threatened and endangered subspecies showed high vulnerability and low adaptive capacity, in particular to sea level rise and habitat fragmentation. They also exhibited larger home ranges and greater dispersal limitation compared to non-endangered subspecies, which may inhibit their ability to track changing climate in fragmented landscapes. There was evidence for lower reproductive capacity in some of the threatened or endangered taxa, but not for most. Taxa located in the Florida Keys or in other low coastal areas were most vulnerable to sea level rise, and also showed low levels of adaptive capacity, indicating they may have a lower probability of conservation success. Our analysis of at-risk subspecies and closely related non-endangered subspecies demonstrates that ecological traits help to explain observed differences in vulnerability and adaptive capacity. This study points to the importance of assessing the relative contributions of multiple threats and evaluating conservation value at the species (or subspecies level when resources are limited and several factors affect conservation success.

  2. Distribution of the characteristics of barbs and barbules on barn owl wing feathers.

    Science.gov (United States)

    Weger, Matthias; Wagner, Hermann

    2017-05-01

    Owls are known for the development of a silent flight. One conspicuous specialization of owl wings that has been implied in noise reduction and that has been demonstrated to change the aerodynamic behavior of the wing is a soft dorsal wing surface. The soft surface is a result of changes in the shape of feather barbs and barbules in owls compared with other bird species. We hypothesized that as the aerodynamic characteristics of a wing change along its chordwise and spanwise direction, so may the shape of the barbs and barbules. Therefore, we examined in detail the shapes of the barbs and barbules in chordwise and spanwise directions. The results showed changes in the shapes of barbs and barbules at the anterior and distal parts of the wing, but not at more posterior parts. The increased density of hook radiates at the distalmost wing position could serve to stiffen that vane part that is subject to the highest forces. The change of pennulum length in the anterior part of the wing and the uniformity further back could mean that a soft surface may be especially important in regions where flow separation may occur. © 2017 Anatomical Society.

  3. Organochlorine Pesticides in the Ferruginous Pygmy Owl (Glaucidium brasilianum) in Chiapas, Mexico.

    Science.gov (United States)

    Arrona-Rivera, Alicia E; Enríquez, Paula L; García-Feria, Luis M; Orellana, Sergio Alvarado; von Osten, Jaime Rendón

    2016-09-01

    Concentrations of organochlorine pesticides were quantified in samples of feathers (n = 17) and blood (n = 15) of the ferruginous pygmy owl (Glaucidium brasilianum). The individuals were captured near the Protected Natural Area Cerro Sonsonate, Chiapas, Mexico, between February and June 2014. In both tissues, pesticides belonging to seven organochlorine chemical families were detected. However, the organochlorine pesticide concentrations differed between feathers and blood. The highest concentrations of hexachlorocyclohexanes were found in feathers (0.63 ± 0.89 μg/g), whereas the highest concentrations of ΣDrines were found in blood (0.31 ± 0.47 μg/mL). By using the summed concentrations for each of the seven families of pesticides found in feathers, we did not find any significant correlation between the pesticides and pectoral muscle or body weight (p > 0.15). The ΣDDT group was the only pesticide family that showed a positive correlation with owl body weight (r = 0.60, p = 0.05); the concentrations of these pesticides were also high in feather and blood tissues (r = 0.87, p = 0.02). Our results confirm that ferruginous pygmy owls in the study area are exposed to these pesticides.

  4. Distribution of the Chuckwalla, Western Burrowing Owl, and Six Bat Species on the Nevada Test Site

    Energy Technology Data Exchange (ETDEWEB)

    Cathy A. Willis

    1997-05-01

    Field Surveys were conducted in 1996 to determine the current distribution of several animal species of concern on the Nevada Test Site (NTS). They included the chuckwall (Sauromalus obesus), western burrowing owl (Speotyto cunicularia), and six species of bats. Nineteen chuckwallas and 118 scat locations were found during the chuckwalla field study. Eighteen western burrowing owls were found at 12 sighting locations during the 1996 field study. Of the eleven bat species of concern which might occur on the NTS, five, and possibly six, were captured during this survey. The U.S. Department of Energy, Nevada Operations Office, takes certain management actions to protect and conserve the chuckwalla, western burrowing owl, and bats on the NTS. These actions are described and include: (1) conducting surveys at sites of proposed land-disturbing activities (2) altering projects whenever possible to avoid or minimize impacts to these species (3) maintaining a geospatial database of known habitat for species of concern (4) sharing sighting and trap location data gathered on the NTS with other local land and resource managers, and (5) conducting periodic field surveys to monitor these species distribution and relative abundance on the NTS.

  5. Cue Reliability Represented in the Shape of Tuning Curves in the Owl's Sound Localization System.

    Science.gov (United States)

    Cazettes, Fanny; Fischer, Brian J; Peña, Jose L

    2016-02-17

    Optimal use of sensory information requires that the brain estimates the reliability of sensory cues, but the neural correlate of cue reliability relevant for behavior is not well defined. Here, we addressed this issue by examining how the reliability of spatial cue influences neuronal responses and behavior in the owl's auditory system. We show that the firing rate and spatial selectivity changed with cue reliability due to the mechanisms generating the tuning to the sound localization cue. We found that the correlated variability among neurons strongly depended on the shape of the tuning curves. Finally, we demonstrated that the change in the neurons' selectivity was necessary and sufficient for a network of stochastic neurons to predict behavior when sensory cues were corrupted with noise. This study demonstrates that the shape of tuning curves can stand alone as a coding dimension of environmental statistics. In natural environments, sensory cues are often corrupted by noise and are therefore unreliable. To make the best decisions, the brain must estimate the degree to which a cue can be trusted. The behaviorally relevant neural correlates of cue reliability are debated. In this study, we used the barn owl's sound localization system to address this question. We demonstrated that the mechanisms that account for spatial selectivity also explained how neural responses changed with degraded signals. This allowed for the neurons' selectivity to capture cue reliability, influencing the population readout commanding the owl's sound-orienting behavior. Copyright © 2016 the authors 0270-6474/16/362101-10$15.00/0.

  6. Laser based spot weld characterization

    Science.gov (United States)

    Jonietz, Florian; Myrach, Philipp; Rethmeier, Michael; Suwala, Hubert; Ziegler, Mathias

    2016-02-01

    Spot welding is one of the most important joining technologies, especially in the automotive industry. Hitherto, the quality of spot welded joints is tested mainly by random destructive tests. A nondestructive testing technique offers the benefit of cost reduction of the testing procedure and optimization of the fabrication process, because every joint could be examined. This would lead to a reduced number of spot welded joints, as redundancies could be avoided. In the procedure described here, the spot welded joint between two zinc-coated steel sheets (HX340LAD+Z100MB or HC340LA+ZE 50/50) is heated optically on one side. Laser radiation and flash light are used as heat sources. The melted zone, the so called "weld nugget" provides the mechanical stability of the connection, but also constitutes a thermal bridge between the sheets. Due to the better thermal contact, the spot welded joint reveals a thermal behavior different from the surrounding material, where the heat transfer between the two sheets is much lower. The difference in the transient thermal behavior is measured with time resolved thermography. Hence, the size of the thermal contact between the two sheets is determined, which is directly correlated to the size of the weld nugget, indicating the quality of the spot weld. The method performs well in transmission with laser radiation and flash light. With laser radiation, it works even in reflection geometry, thus offering the possibility of testing with just one-sided accessibility. By using heating with collimated laser radiation, not only contact-free, but also remote testing is feasible. A further convenience compared to similar thermographic approaches is the applicability on bare steel sheets without any optical coating for emissivity correction. For this purpose, a proper way of emissivity correction was established.

  7. Is this Red Spot the Blue Spot (locus ceruleum)?

    Energy Technology Data Exchange (ETDEWEB)

    Choe, Won Sick; Lee, Yu Kyung; Lee, Min Kyung; Hwang, Kyung Hoon [Gachon University Gil Hospital, Incheon (Korea, Republic of)

    2010-06-15

    The authors report brain images of 18F-FDG-PET in a case of schizophrenia. The images showed strikingly increased bilateral uptake in the locus ceruleum. The locus ceruleum is called the blue spot and known to be a center of the norepinephrinergic system.

  8. Is this Red Spot the Blue Spot (locus ceruleum)?

    International Nuclear Information System (INIS)

    Choe, Won Sick; Lee, Yu Kyung; Lee, Min Kyung; Hwang, Kyung Hoon

    2010-01-01

    The authors report brain images of 18F-FDG-PET in a case of schizophrenia. The images showed strikingly increased bilateral uptake in the locus ceruleum. The locus ceruleum is called the blue spot and known to be a center of the norepinephrinergic system.

  9. Statistical hot spot analysis of reactor cores

    International Nuclear Information System (INIS)

    Schaefer, H.

    1974-05-01

    This report is an introduction into statistical hot spot analysis. After the definition of the term 'hot spot' a statistical analysis is outlined. The mathematical method is presented, especially the formula concerning the probability of no hot spots in a reactor core is evaluated. A discussion with the boundary conditions of a statistical hot spot analysis is given (technological limits, nominal situation, uncertainties). The application of the hot spot analysis to the linear power of pellets and the temperature rise in cooling channels is demonstrated with respect to the test zone of KNK II. Basic values, such as probability of no hot spots, hot spot potential, expected hot spot diagram and cumulative distribution function of hot spots, are discussed. It is shown, that the risk of hot channels can be dispersed equally over all subassemblies by an adequate choice of the nominal temperature distribution in the core

  10. Morphometric and molecular differentiation between quetzal subspecies of Pharomachrus mocinno (Trogoniformes: Trogonidae

    Directory of Open Access Journals (Sweden)

    Sofía Solórzano

    2010-03-01

    Full Text Available The resplendent Quetzal (Pharomachrus mocinno is an endemic Mesoamerican bird species of conservation concern. Within this species, the subspecies P. m. costaricensis and P. m. mocinno, have been recognized by apparent morphometric differences; however, presently there is no sufficient data for confirmation. We analyzed eight morphometric attributes of the body from 41 quetzals: body length, tarsus and cord wing, as well as the length, wide and depth of the bill, body weight; and in the case of the males, the length of the long upper-tail cover feathers. We used multivariate analyses to discriminate morphometric differences between subspecies and contrasted each morphometric attribute between and within subspecies with paired non-parametric Wilcoxon test. In order to review the intraspecific taxonomic status of this bird, we added phylogenetic analysis, and genetic divergence and differentiation based on nucleotide variations in four sequences of mtDNA. The nucleotide variation was estimated in control region, subunit NDH6, and tRNA Glu and tRNA Phe in 26 quetzals from eight localities distributed in five countries. We estimated the genetic divergence and differentiation between subspecies according to a mutation-drift equilibrium model. We obtained the best mutation nucleotide model following the procedure implemented in model test program. We constructed the phylogenetic relationships between subspecies by maximum parsimony and maximum likelihood using PAUP, as well as with Bayesian statistics. The multivariate analyses showed two different morphometric groups, and individuals clustered according to the subspecies that they belong. The paired comparisons between subspecies showed strong differences in most of the attributes analyzed. Along the four mtDNA sequences, we identified 32 nucleotide positions that have a particular nucleotide according to the quetzals subspecies. The genetic divergence and the differentiation was strong and markedly

  11. A molecular marker distinguishes the subspecies Melipona quadrifasciata quadrifasciata and Melipona quadrifasciata anthidioides (Hymenoptera: Apidae, Meliponinae

    Directory of Open Access Journals (Sweden)

    Ana M. Waldschmidt

    2000-09-01

    Full Text Available The stingless bee species Melipona quadrifasciata includes two subspecies, Melipona quadrifasciata anthidioids and Melipona quadrifasciata quadrifasciata. The morphological difference between the two subspecies is the presence of three to five continuous yellow stripes on the terga on the 3rd to 6th segments in workers and males of M. q. quadrifasciata, and two to five interrupted bands in M. q. anthidioides. We identified a DNA marker which is present in M. q. quadrifasciata and absent in M. q. anthidioides. Only one among the M. q. quadrifasciata colonies did not present the marker. It was also absent in bees collected in northern Minas Gerais State (Brazil, despite their morphological resemblance to M. q. quadrifasciata. The marker can be used for studying the genetic structure of the hybridization zone formed by the intercrossing of the two subspecies.A espécie de abelha sem ferrão Melipona quadrifasciata apresenta duas subespécies, Melipona quadrifasciata quadrifasciata Lep. e Melipona quadrifasciata anthidioides Lep. A diferença morfológica entre as duas subespécies é a presença de três a cinco bandas tergais amarelas do 3º ao 6º segmentos em operárias e machos de M. q. quadrifasciata e duas a cinco bandas interrompidas em M. q. anthidioides. Nós identificamos um marcador de DNA que está presente em M. q. quadrifasciata e ausente em M. q. anthidioides. Este marcador está ausente em abelhas coletadas no norte do Estado de Minas Gerais (Brasil, embora esses indivíduos apresentem morfologia similar à de M. q. quadrifasciata. Este marcador poderá ser utilizado em estudos da zona de hibridação entre as subespécies.

  12. Morpho- biochemical evaluation of Brassica rapa sub-species for salt tolerance

    Directory of Open Access Journals (Sweden)

    Jan Sohail Ahmad

    2016-01-01

    Full Text Available Salt stress is one of the key abiotic stresses that affect both the qualitative and quantitative characters of many Brassica rapa sub-species by disturbing its normal morphobiochemical processes. Therefore, the present research work was designed to study the effect of different NaCl events (0, 50,100 and 150 mmol on morphological and biochemical characters and to screen salt tolerant genotypes among brown, yellow and toria types of B. rapa sub-species. The plants were grown in test tubes with addition of four level of NaCl (0, 50,100 and 150 mmol. The effect of salinity on shoot and root length, shoot/ root fresh and dry weight, relative water content (RWC, proline and chlorophyll a, b, a+b contents was recorded after 4 weeks of sowing. The genotype 22861 (brown type showed excellent morphological and biochemical performance at all stress levels followed by Toria-Sathi and Toria-A respectively as compared to Check variety TS-1. The genotype 26158 (yellow type gave very poor performance and retard growth. The %RWC values and chlorophyll a, b and a+b contents were decreased several folds with the increase of salt concentration. While, the proline contents was increased with raising of salt stress. The brown and toria types showed maximum tolerance to salt stress at early germination stages as compare to yellows one. The present study will serve as model to develop quick salt tolerant genotypes among different plant sub-species against salt stress.

  13. Recent and subrecent diet of the barn owl (Tyto alba in Slovakia

    Directory of Open Access Journals (Sweden)

    Obuch Ján

    2016-12-01

    Full Text Available We completed data on the diet of the barn owl (Tyto alba predominately from pellets for the period of the last 50 years from Slovakia. We analyzed material from 251 locations and 16 territorial units. The aggregate represents 119,231 pieces of prey from 47 species of mammals (Mammalia, 95.7% and 58 species of birds (Aves, 3.9%, with a small representation of amphibians, reptiles (Amphibia and Reptilia, 0.2% and invertebrates (Invertebrata, 0.2%. The obtaining of food among the owls is limited to synanthropic environments and the surrounding agricultural landscape, and the centre of its distribution in the recent period (i.e. the past 50 years: 1965-201 5 has been concentrated mainly on the southern parts of Slovakia. In this environment the common vole (Microtus arvalis, 59.6% is the primary prey. Additional prey are rodents of the family Muridae: Mus musculus (5.6%, Micromys minutus (2.2%, Apodemus microps (2.2%, A. flavicollis (2.0%, A. sylvaticus (1 .6% and A. agrarius (1 .5%; insectivores of the family Soricidae: Sorex araneus (6.2%, S. minutus (2.4%, Crocidura leucodon (4.8% and C. suaveolens (2.8%; and the house sparrow Passer domesticus (2.9%. In the higher situated Turcianska kotlina Basin the species M. arvalis (74.3% has higher domination, and instead of the white-toothed shrews the water shrews Neomys anomalus (2.8% and N. fodiens (1 .3% are more abundantly represented. In 3 localities owls focused on hunting bats; for example, in the church in Ratková the order Chiroptera made up 35.2% of prey. From the subrecent period (i.e. from before more than 50 years ago we evaluate 4 samples from the territory of Slovakia with 15,601 pieces of prey ofT. alba. Before more than 50 years ago owls were also more abundantly represented at higher elevations in Slovakia, evidence of which is Weisz’s collection of pellets from 1 6 localities in the Ondavská vrchovina Upland in the years 1945 to 1963, but also a registry of data from the 19th and

  14. Sub-specialization in plastic surgery in Sub-saharan Africa: capacities, gaps and opportunities

    Science.gov (United States)

    Ibrahim, Abdulrasheed

    2014-01-01

    The skill set of a plastic surgeon, which addresses a broad range of soft tissue conditions that are prevalent in sub-Saharan Africa, remains relevant in the unmet need for surgical care. Recently, there has being a major paradigm shift from discipline-based to disease-based care, resulting in an emerging component of patient-centered care; adequate access to subspecialty care in plastic and reconstructive surgery. Given the need for an evolution in sub-specialization, this article focuses on the benefits and future role of differentiation of plastic surgeons into sub-specialty training pathways in sub-Saharan Africa. PMID:25584125

  15. In vitro susceptibility of Pasteurella multocida subspecies multocida strains isolated from swine to 42 antimicrobial agents.

    Science.gov (United States)

    Gutiérrez Martin, C B; Rodríguez Ferri, E F

    1993-08-01

    The minimal inhibitory concentrations (MICs) of 42 antimicrobial agents were determined against 59 strains of Pasteurella multocida subspecies multocida, all isolated from swine lungs with lesions indicative of pneumonia. Penicillins (except cloxacillin), aminoglycosides, tetracyclines, erythromycin, josamycin, thiamphenicol, colistin, rifampin and mupirocin showed good activities, with ranging resistance between 0 and 6.8%. Higher resistance was observed for spiramycin and fosfomycin. Tylosin, vancomycin, metronidazole, dapsone and tiamulin, to which strains showed high rates of resistance, were ineffective. Cephalosporins (especially the third-generation cephalosporins) and quinolones (especially the fluorinated quinolones) were the most effective antimicrobial agents against P. multocida subsp. multocida strains and they might be of value for in vivo use.

  16. Campylobacter fetus subspecies: Comparative genomics and prediction of potential virulence targets

    DEFF Research Database (Denmark)

    Ali, Amjad; Soares, Siomar C.; Santos, Anderson R.

    2012-01-01

    . The potential candidate factors identified for attenuation and/or subunit vaccine development against C. fetus subspecies contain: nucleoside diphosphate kinase (Ndk), type IV secretion systems (T4SS), outer membrane proteins (OMP), substrate binding proteins CjaA and CjaC, surface array proteins, sap gene......, and cytolethal distending toxin (CDT). Significantly, many of those genes were found in genomic regions with signals of horizontal gene transfer and, therefore, predicted as putative pathogenicity islands. We found CRISPR loci and dam genes in an island specific for C. fetus subsp. fetus, and T4SS and sap genes...

  17. Systemic infection of Mycobacterium avium subspecies hominissuis and fungus in a pet dog.

    Science.gov (United States)

    Kim, Myung-Chul; Kim, JaeMyung; Kang, WoonKi; Jang, Yunho; Kim, Yongbaek

    2016-01-01

    A 3-year-old neutered female poodle with a long history of dermatophytic skin disease was presented with lethargy, anorexia and progressive weight loss. Abdominal ultrasonography revealed markedly enlarged mesenteric lymph nodes and multiple hypoechoic foci in the spleen. Cytology of the mesenteric lymph nodes and spleen showed granulomatous inflammation with fungal organisms and negatively stained intracytoplasmic bacterial rods consistent with Mycobacteria spp. Based on culture, multiplex polymerase chain reaction and sequence analysis, the bacterium was identified as Mycobacterium avium subspecies hominissuis. Despite treatment with antibiotics, the dog's condition deteriorated, and it died approximately 3 weeks after first presentation.

  18. Facts, myths and hypotheses on the zoonotic nature of Mycobacterium avium subspecies paratuberculosis.

    Science.gov (United States)

    Atreya, Raja; Bülte, Michael; Gerlach, Gerald-F; Goethe, Ralph; Hornef, Mathias W; Köhler, Heike; Meens, Jochen; Möbius, Petra; Roeb, Elke; Weiss, Siegfried

    2014-10-01

    Mycobacterium avium subspecies paratuberculosis (MAP) is the causative agent of paratuberculosis (Johne's disease [JD]), a chronic granulomatous enteritis in ruminants. JD is one of the most widespread bacterial diseases of domestic animals with significant economic impact. The histopathological picture of JD resembles that of Crohn's disease (CD), a human chronic inflammatory bowel disease of still unresolved aetiology. An aetiological relevance of MAP for CD has been proposed. This and the ambiguity of other published epidemiological findings raise the question whether MAP represents a zoonotic agent. In this review, we will discuss evidence that MAP has zoonotic capacity. Copyright © 2014 Elsevier GmbH. All rights reserved.

  19. Genetic relationships among some subspecies of the Peregrine Falcon (Falco peregrinus L.), inferred from mitochondrial DNA control-region sequences

    Science.gov (United States)

    White, Clayton M.; Sonsthagen, Sarah A.; Sage, George K.; Anderson, Clifford; Talbot, Sandra L.

    2013-01-01

    The ability to successfully colonize and persist in diverse environments likely requires broad morphological and behavioral plasticity and adaptability, and this may partly explain why the Peregrine Falcon (Falco peregrinus) exhibits a large range of morphological characteristics across their global distribution. Regional and local differences within Peregrine Falcons were sufficiently variable that ∼75 subspecies have been described; many were subsumed, and currently 19 are generally recognized. We used sequence information from the control region of the mitochondrial genome to test for concordance between genetic structure and representatives of 12 current subspecies and from two areas where subspecies distributions overlap. Haplotypes were broadly shared among subspecies, and all geographic locales shared a widely distributed common haplotype (FalconCR2). Haplotypes were distributed in a star-like phylogeny, consistent with rapid expansion of a recently derived species, with observed genetic patterns congruent with incomplete lineage sorting and/or differential rates of evolution on morphology and neutral genetic characters. Hierarchical analyses of molecular variance did not uncover genetic partitioning at the continental level, despite strong population-level structure (FST = 0.228). Similar analyses found weak partitioning, albeit significant, among subspecies (FCT = 0.138). All reconstructions placed the hierofalcons' (Gyrfalcon [F. rusticolus] and Saker Falcon [F. cherrug]) haplotypes in a well-supported clade either basal or unresolved with respect to the Peregrine Falcon. In addition, haplotypes representing Taita Falcon (F. fasciinucha) were placed within the Peregrine Falcon clade.

  20. Identical metabolic rate and thermal conductance in Rock Sandpiper (Calidris ptilocnemis) subspecies with contrasting nonbreeding life histories

    Science.gov (United States)

    Ruthrauff, Daniel R.; Dekinga, Anne; Gill, Robert E.; Piersma, Theunis

    2013-01-01

    Closely related species or subspecies can exhibit metabolic differences that reflect site-specific environmental conditions. Whether such differences represent fixed traits or flexible adjustments to local conditions, however, is difficult to predict across taxa. The nominate race of Rock Sandpiper (Calidris ptilocnemis) exhibits the most northerly nonbreeding distribution of any shorebird in the North Pacific, being common during winter in cold, dark locations as far north as upper Cook Inlet, Alaska (61°N). By contrast, the tschuktschorum subspecies migrates to sites ranging from about 59°N to more benign locations as far south as ~37°N. These distributional extremes exert contrasting energetic demands, and we measured common metabolic parameters in the two subspecies held under identical laboratory conditions to determine whether differences in these parameters are reflected by their nonbreeding life histories. Basal metabolic rate and thermal conductance did not differ between subspecies, and the subspecies had a similar metabolic response to temperatures below their thermoneutral zone. Relatively low thermal conductance values may, however, reflect intrinsic metabolic adaptations to northerly latitudes. In the absence of differences in basic metabolic parameters, the two subspecies’ nonbreeding distributions will likely be more strongly influenced by adaptations to regional variation in ecological factors such as prey density, prey quality, and foraging habitat.

  1. Streptococcal toxic-shock syndrome due to Streptococcus dysgalactiae subspecies equisimilis in breast cancer-related lymphedema: a case report.

    Science.gov (United States)

    Sumazaki, Makoto; Saito, Fumi; Ogata, Hideaki; Yoshida, Miho; Kubota, Yorichika; Magoshi, Syunsuke; Kaneko, Hironori

    2017-07-14

    Breast cancer-related lymphedema often causes cellulitis and is one of the most common complications after breast cancer surgery. Streptococci are the major pathogens underlying such cellulitis. Among the streptococci, the importance of the Lancefield groups C and G is underappreciated; most cases involve Streptococcus dysgalactiae subspecies equisimilis. Despite having a relatively weak toxicity compared with group A streptococci, Streptococcus dysgalactiae subspecies equisimilis is associated with a mortality rate that is as high as that of group A streptococci in cases of invasive infection because Streptococcus dysgalactiae subspecies equisimilis mainly affects elderly individuals who already have various comorbidities. An 83-year-old Japanese woman with breast cancer-related lymphedema in her left upper limb was referred to our hospital with high fever and acute pain with erythema in her left arm. She showed septic shock with disseminated intravascular coagulation. Blood culture showed positive results for Streptococcus dysgalactiae subspecies equisimilis, confirming a diagnosis of streptococcal toxic-shock syndrome. She survived after successful intensive care. To the best of our knowledge, this case represents the first report of Streptococcus dysgalactiae subspecies equisimilis-induced streptococcal toxic-shock syndrome in a patient with breast cancer-related lymphedema. Breast cancer-related lymphedema is a common problem, and we must pay attention to invasive streptococcal soft tissue infections, particularly in elderly patients with chronic disease.

  2. Rocky Mountain spotted fever, Panama.

    Science.gov (United States)

    Estripeaut, Dora; Aramburú, María Gabriela; Sáez-Llorens, Xavier; Thompson, Herbert A; Dasch, Gregory A; Paddock, Christopher D; Zaki, Sherif; Eremeeva, Marina E

    2007-11-01

    We describe a fatal pediatric case of Rocky Mountain spotted fever in Panama, the first, to our knowledge, since the 1950s. Diagnosis was established by immunohistochemistry, PCR, and isolation of Rickettsia rickettsii from postmortem tissues. Molecular typing demonstrated strong relatedness of the isolate to strains of R. rickettsii from Central and South America.

  3. Possible mechanisms for sensitivity to organophosphorus and carbamate insecticides in eastern screech-owls and American kestrels.

    Science.gov (United States)

    Vyas, N B; Thiele, L A; Garland, S C

    1998-07-01

    Effects of a single dietary exposure to fenthion and carbofuran on the survival, feeding behavior and brain ChE activity of eastern screech-owls, Otus asio and American kestrels, Falco sparverius, were evaluated. Birds were exposed to fenthion (23.6-189.0 ppm) or carbofuran (31.7-253.6 ppm) via meatballs. Carbofuran-exposed owls ate either or = 80% of the meatball whereas all kestrels ate meatball before exhibiting acute signs of toxicity. Fenthion-exposed owls and kestrels displayed a wide spectrum of meatball consumption (< 10-100%). Significant brain ChE inhibition was observed in dead and surviving kestrels exposed to fenthion and carbofuran and dead owls exposed to fenthion (P < 0.0001). Brain ChE activity of owls exposed to carbofuran that survived was not different from that of controls (P = 0.25). Data suggest: (1) slow feeding on a carbamate-contaminated item may provide limited protection from the toxicity of the chemical at certain rates of exposure; (2) the degree of ChE inhibition at neuromuscular junctions may be critical in determining the sensitivity of a species to a carbamate insecticide; (3) sensitivity may be a function of the ChE affinity for the carbamate inhibitor; and (4) the importance of neuromuscular junction ChE depression in determining the sensitivity of an animal may be species-specific.

  4. Possible mechanisms for sensitivity to organophosphorus and carbamate insecticides in eastern screech-owls and American kestrels

    Science.gov (United States)

    Vyas, N.B.; Thiele, L.A.; Garland, S.C.

    1998-01-01

    Effects of a single dietary exposure to fenthion and carbofuran on the survival, feeding behavior and brain ChE activity of eastern screech-owls, Otus asio and American kestrels, Falco sparverius, were evaluated. Birds were exposed to fenthion (23.6–189.0 ppm) or carbofuran (31.7–253.6 ppm) via meatballs. Carbofuran-exposed owls ate either ≤10% or ≥80% of the meatball whereas all kestrels ate ≤10% of the meatball before exhibiting acute signs of toxicity. Fenthion-exposed owls and kestrels displayed a wide spectrum of meatball consumption (<10–100%). Significant brain ChE inhibition was observed in dead and surviving kestrels exposed to fenthion and carbofuran and dead owls exposed to fenthion (P<0.0001). Brain ChE activity of owls exposed to carbofuran that survived was not different from that of controls (P=0.25). Data suggest: (1) slow feeding on a carbamate-contaminated item may provide limited protection from the toxicity of the chemical at certain rates of exposure; (2) the degree of ChE inhibition at neuromuscular junctions may be critical in determining the sensitivity of a species to a carbamate insecticide; (3) sensitivity may be a function of the ChE affinity for the carbamate inhibitor; and (4) the importance of neuromuscular junction ChE depression in determining the sensitivity of an animal may be species-specific.

  5. Home range and habitat use of little owl (Athene noctua in an agricultural landscape in coastal Catalonia, Spain

    Directory of Open Access Journals (Sweden)

    Framis, H.

    2011-12-01

    Full Text Available In recent decades agricultural landscapes in Catalonia have undergone a profound transformation as in most of Europe. Reforestation and urban development have reduced farmland and therefore the availability of suitable habitat for some bird species such as the little owl (Athene noctua. The outskirts of the city of Mataró by the Mediterranean Sea exemplify this landscape change, but still support a population of little owl where agriculture is carried out. Three resident little owls were monitored with telemetry weekly from November 2007 until the beginning of August 2008 in this suburban agricultural landscape. Mean home range ± SD was 10.9 ± 5.5 ha for minimum convex polygon (MCP100 and 7.4 ± 3.8 ha for Kernel 95% probability function (K95. Home ranges of contiguous neighboring pairs overlapped 18.4% (MCP100 or 6% (K95. Home range varied among seasons reaching a maximum between March and early August but always included the nesting site. Small forested patches were associated with roosting and nesting areas where cavities in Carob trees (Ceratonia siliqua were important. When foraging in crop fields, the owls typically fed where crops had recently been harvested and replanted. All three owls bred successfully.

  6. The winter diet of short-eared owls in subtropical Texas: Do southern diets provide evidence of opportunity?

    Science.gov (United States)

    Williford, Damon; Woodin, Marc C.; Skoruppa, Mary Kay

    2011-01-01

    Winter diet of the Short-eared Owl (Asio flammeus) in Texas is little known. We investigated the diet of Short-eared Owls wintering in McMullen County, in subtropical Texas, by analyzing the contents of 129 pellets collected over two winters (28 November 2007 to 22 February 2008 and 11 December 2008 to 11 February 2009) and conducted a latitudinal-based comparison of published diet studies of Short-eared Owls. In southern Texas, we recovered the remains of 162 prey items, 98% of which were vertebrates. Hispid cotton rats (Sigmodon hispidus) were the most important prey species in terms of percent of total number (67%) and percent of total biomass (87%). Most (86%) Short-eared Owl diet studies (based on ≥100 pellets) have been conducted north of 35°N, with only six studies, including the present study, conducted at or south of 35°N latitude. Voles (primarily Microtus spp.) were the dominant prey in North American studies (71%), but microtines were not the dominant prey in any of the six studies conducted south of 35°N latitude. We suggest that Short-eared Owls do not specialize on microtines, as is often implied, but rather depend on rodents with cyclic populations, such as the hispid cotton rat in southern areas.

  7. Nesting of the Blakiston's Fish-Owl in the Nest of the Steller’s Sea Eagle, Magadan Region, Russia

    Directory of Open Access Journals (Sweden)

    Irina G. Utekhina

    2016-04-01

    Full Text Available In 2015 one Steller’s Sea Eagle nest was occupied by a Blakiston’s Fish Owl, the first record of which came from the Nature Reserve Inspector, E.A. Stepanov, who, on May 17, noted the pair of fish owls near a Steller’s Sea Eagle nest on the western bank of the Chelomdja River, 3 km downstream from the Moldot ranger’s station. On that date one of the owls was sitting in the nest, and another was sitting in a tree nearby the nest. On May 26, E. Stepanov observed the owls in the same position. We observed the nest on 20 and 21 June 2015, and saw one large Blakiston’s Fish Owl chick in the nest; no adults were noted. Inspector A. Stepanov saw the chick in the nest on June 23, and an adult in a nearby.  Magadan State Reserve Inspector A. Akhanov reported that the nest was empty and no adults were seen on June 25.

  8. The Best of All Possible Worlds: Applying the Model Driven Architecture Approach to a JC3IEDM OWL Ontology Modeled in UML

    Science.gov (United States)

    2014-06-01

    from the ODM standard. Leveraging SPARX EA’s Java application programming interface (API), the team built a tool called OWL2EA that can ingest an OWL...server MySQL creates the physical schema that enables a user to store and retrieve data conforming to the vocabulary of the JC3IEDM. 6. GENERATING AN

  9. Autumn migration of Northern Saw-whet Owls (Aegolius acadicus) in the Middle Atlantic and Northeastern United States: what observations from 1995 suggest

    Science.gov (United States)

    David F. Brinker; Katharine E. Duffy; David M. Whalen; Bryan D. Watts; Kevin M. Dodge

    1997-01-01

    During the autumn of 1995 more than 5,900 migrant Northern Saw-whet Owls were banded in eastern and central North America. Though typical numbers of owls were banded at most Great Lakes stations during 1995, a record number were netted at Hawk Ridge, near Duluth, Minnesota and, when compared with more normal years, a remarkably disproportionate 40 percent of the total...

  10. Clutch size variation in Tawny Owls (Strix aluco) from adjacent valley systems: can this be used as a surrogate to investigate temporal and spatial variations in vole density?

    Science.gov (United States)

    Steve J. Petty; Billy L. Fawkes

    1997-01-01

    Research on Tawny Owls (Strix aluco) in Kielder Forest, northern England, since 1981 demonstrated that field voles (Microtus agrestis) were their most important food. Here, field voles exhibited a 3-4 year cycle of abundance, and mean clutch size in Tawny Owls was significantly related to vole abundance in March. In this analysis...

  11. Immunoreactivity of protein tyrosine phosphatase A (PtpA) in sera from sheep infected with Mycobacterium avium subspecies paratuberculosis.

    Science.gov (United States)

    Gurung, Ratna B; Begg, Douglas J; Purdie, Auriol C; Bach, Horacio; Whittington, Richard J

    2014-07-15

    Evasion of host defense mechanisms and survival inside infected host macrophages are features of pathogenic mycobacteria including Mycobacterium avium subspecies paratuberculosis, the causative agent of Johne's disease in ruminants. Protein tyrosine phosphatase A (PtpA) has been identified as a secreted protein critical for survival of mycobacteria within infected macrophages. The host may mount an immune response to such secreted proteins. In this study, the humoral immune response to purified recombinant M. avium subsp. paratuberculosis PtpA was investigated using sera from a cohort of sheep infected with M. avium subsp. paratuberculosis and compared with uninfected healthy controls. A significantly higher level of reactivity to PtpA was observed in sera collected from M. avium subspecies paratuberculosis infected sheep when compared to those from uninfected healthy controls. PtpA could be a potential candidate antigen for detection of humoral immune responses in sheep infected with M. avium subspecies paratuberculosis. Copyright © 2014 Elsevier B.V. All rights reserved.

  12. [Morphological differentiations of the gills of two Gymnocypris przewa-lskii subspecies in different habitats and their functional adaptations].

    Science.gov (United States)

    Zhang, Ren-Yi; Li, Guo-Gang; Zhang, Cun-Fang; Tang, Yong-Tao; Zhao, Kai

    2013-08-01

    Gill morphologies of two subspecies of Gymnocypris przewalskii (Gymnocypris przewalskii przewalskii and Gymnocypris przewalskii ganzihonensis) in different habitats were analyzed under scanning electron microscope. Results indicated that G. p. przewalskii had numerous long and dense-lined gill rakers while G. p. ganzihonensis had few short and scatter-lined gill rakers. There were no significant differences in distance between gill filaments (DBF) and distance gill lamella (DBL) between the two subspecies, but gill filaments of G. p. przewalskii were longer than in G. p. ganzihonensis. The electron microscopic study indicated that the pavement epithelium cells of G. p. przewalskii were well defined as irregular ovals, but were hexagonal in G. p. ganzihonensis. Moreover, G. p. przewalskii had more chloride cells than G. p. ganzihonensis, and mucous cells were only found on the surface of gill filaments of G. p. przewalskii. The morphological differences between the two subspecies of G. przewalskii are adaptations to their corresponding diets and habitats.

  13. The spot market and the spot price: applicability and limitations

    International Nuclear Information System (INIS)

    White, G. Jr.

    1987-01-01

    The subject of spot prices and their relationship to long-term contracting is addressed. The author is associated with Nuexco, which originally was called the Nuclear Exchange Corporation. They use the term Exchange Value which originated in the idea that Nuexco operated an exchange 'bank' - those with too much uranium could 'bank it', those with short-term needs could borrow from the 'bank'. If the borrower repaid slightly more or less the difference was settled using the 'exchange value'. This became used for longer-term transactions and now settling the monthly value is an important part of Nuexco's activities. The exact nature of the Exchange Value is defined. Now more and more buyers are insisting on spot market related pricing even where this is not meaningfully related to uranium production costs. (U.K.)

  14. Karyotypic evolution of ribosomal sites in buffalo subspecies and their crossbreed

    Directory of Open Access Journals (Sweden)

    Tiago Marafiga Degrandi

    2014-06-01

    Full Text Available Domestic buffaloes are divided into two group based on cytogenetic characteristics and habitats: the "river buffaloes" with 2n = 50 and the "swamp buffaloes", 2n = 48. Nevertheless, their hybrids are viable, fertile and identified by a 2n = 49. In order to have a better characterization of these different cytotypes of buffaloes, and considering that NOR-bearing chromosomes are involved in the rearrangements responsible for the karyotypic differences, we applied silver staining (Ag-NOR and performed fluorescent in situ hybridization (FISH experiments using 18S rDNA as probe. Metaphases were obtained through blood lymphocyte culture of 21 individuals, including river, swamp and hybrid cytotypes. Ag-NOR staining revealed active NORs on six chromosome pairs (3p, 4p, 6, 21, 23, 24 in the river buffaloes, whereas the swamp buffaloes presented only five NOR-bearing pairs (4p, 6, 20, 22, 23. The F1 crossbreed had 11 chromosomes with active NORs, indicating expression of both parental chromosomes. FISH analysis confirmed the numerical divergence identified with Ag-NOR. This result is explained by the loss of the NOR located on chromosome 4p in the river buffalo, which is involved in the tandem fusion with chromosome 9 in this subspecies. A comparison with the ancestral cattle karyotype suggests that the NOR found on the 3p of the river buffalo may have originated from a duplication of ribosomal genes, resulting in the formation of new NOR sites in this subspecies.

  15. Differentiation of Cannabis subspecies by THCA synthase gene analysis using RFLP.

    Science.gov (United States)

    Cirovic, Natasa; Kecmanovic, Miljana; Keckarevic, Dusan; Keckarevic Markovic, Milica

    2017-10-01

    Cannabis sativa subspecies, known as industrial hemp (C. sativa sativa) and marijuana (C. sativa indica) show no evident morphological distinctions, but they contain different levels of psychoactive Δ-9-tetrahidrocanabinol (THC), with considerably higher concentration in marijuana than in hemp. C. sativa subspecies differ in sequence of tetrahydrocannabinolic acid (THCA) synthase gene, responsible for THC production, and only one active copy of the gene, distinctive for marijuana, is capable of producing THC in concentration more then 0,3% in dried plants, usually punishable by the law. Twenty different samples of marijuana that contain THC in concentration more then 0,3% and three varieties of industrial hemp were analyzed for presence of an active copy of THCA synthase gene using in-house developed restriction fragment length polymorphism (RFLP) method All twenty samples of marijuana were positive for the active copy of THCA synthase gene, 16 of them heterozygous. All three varieties of industrial hemp were homozygous for inactive copy. An algorithm for the fast and accurate forensic analysis of samples suspected to be marijuana was constructed, answering the question if an analyzed sample is capable of producing THC in concentrations higher than 0.3%. Copyright © 2017 Elsevier Ltd and Faculty of Forensic and Legal Medicine. All rights reserved.

  16. Detection of Mycobacterium avium subspecies in the gut associated lymphoid tissue of slaughtered rabbits.

    Science.gov (United States)

    Arrazuria, Rakel; Sevilla, Iker A; Molina, Elena; Pérez, Valentín; Garrido, Joseba M; Juste, Ramón A; Elguezabal, Natalia

    2015-06-11

    Rabbits are susceptible to infection by different species of the genus Mycobacterium. Particularly, development of specific lesions and isolation of Mycobacterium avium subsp. avium and Mycobacterium avium subsp. paratuberculosis, both subspecies of the M. avium complex, has been reported in wildlife conditions. Although, rabbit meat production worldwide is 200 million tons per year, microbiological data on this source of meat is lacking and more specifically reports of mycobacterial presence in industrially reared rabbit for human consumption have not been published. To this end, we sought mycobacteria by microbiological and histopathological methods paying special attention to Mycobacterium avium subsp. paratuberculosis in rabbits from commercial rabbitries from the North East of Spain. M. avium subsp. paratuberculosis was not detected either by culture or PCR. However, Mycobacterium avium subsp. avium was detected in 15.15% (10/66) and Mycobacterium avium subsp. hominissuis was detected in 1.51% (1/66) of gut associated lymphoid tissue of sampled animals by PCR, whereas caecal contents were negative. 9% (6/66) of the animals presented gross lesions suggestive of lymphoid activation, 6% (4/66) presented granulomatous lesions and 3% (2/66) contained acid fast bacilli. Mycobacterial isolation from samples was not achieved, although colonies of Thermoactinomycetes sp. were identified by 16s rRNA sequencing in 6% (4/66) of sampled animals. Apparently healthy farmed rabbits that go to slaughter may carry M. avium subspecies in gut associated lymphoid tissue.

  17. Chemical Diversity in Volatiles of Helichrysum plicatum DC. Subspecies in Turkey

    Directory of Open Access Journals (Sweden)

    Bintuğ Öztürk

    2014-07-01

    Full Text Available In the present work three subspecies of Helichrysum plicatum DC. (Helichrysum plicatum DC. subsp. plicatum, Helichrysum plicatum DC. subsp. polyphillum (Ledeb P.H.Davis & Kupicha and Helichrysum plicatum DC. subsp. isauricum Parolly were investigated for the essential oil chemical compositions. The volatiles were obtained by conventional hydrodistillation of aerial parts and microdistillation of inflorescences. Subsequent gas chromatography (GC-FID and gas chromatography coupled to mass spectrometry (GC/MS revealed chemical diversity in compositions of the volatiles analyzed. A total of 199 compounds were identified representing 73.9-98.3% of the volatiles compositions. High abundance of fatty acids and their esters (24.9-70.8% was detected in the herb volatiles of H. plicatum subsp. polyphyllum and H. plicatum subsp. isauricum. The inflorescences of Helichrysum subspecies were found to be rich in monoterpenes (15.0-93.1%, fatty acids (0.1-36.3% and sesquiterpenes (1.1-25.5%. The inflorescence volatiles of H. plicatum subsp. isauricum were distinguished by predomination of monoterpene hydrocarbons (93.1% with fenchene (88.3% as the major constituent

  18. Laser Pyrometer For Spot Temperature Measurements

    Science.gov (United States)

    Elleman, D. D.; Allen, J. L.; Lee, M. C.

    1988-01-01

    Laser pyrometer makes temperature map by scanning measuring spot across target. Scanning laser pyrometer passively measures radiation emitted by scanned spot on target and calibrated by similar passive measurement on blackbody of known temperature. Laser beam turned on for active measurements of reflectances of target spot and reflectance standard. From measurements, temperature of target spot inferred. Pyrometer useful for non-contact measurement of temperature distributions in processing of materials.

  19. Laser Spot Detection Based on Reaction Diffusion

    OpenAIRE

    Alejandro Vázquez-Otero; Danila Khikhlukha; J. M. Solano-Altamirano; Raquel Dormido; Natividad Duro

    2016-01-01

    Center-location of a laser spot is a problem of interest when the laser is used for processing and performing measurements. Measurement quality depends on correctly determining the location of the laser spot. Hence, improving and proposing algorithms for the correct location of the spots are fundamental issues in laser-based measurements. In this paper we introduce a Reaction Diffusion (RD) system as the main computational framework for robustly finding laser spot centers. The method presente...

  20. Spatial Variation and Survival of Salmonella enterica Subspecies in a Population of Australian Sleepy Lizards (Tiliqua rugosa).

    Science.gov (United States)

    Parsons, Sandra K; Bull, C Michael; Gordon, David M

    2015-09-01

    The life cycles of many enteric bacterial species require a transition between two very distinct environments. Their primary habitat is the gastrointestinal tract of the host, while their secondary habitat, during transmission from one host to another, consists of environments external to the host, such as soil, water, and sediments. Consequently, both host and environmental factors shape the genetic structure of enteric bacterial populations. This study examined the distribution of four Salmonella enterica subspecies in a population of sleepy lizards, Tiliqua rugosa, in a semiarid region of South Australia. The lizards living within the 1,920-m by 720-m study site were radio tracked, and their enteric bacteria were sampled at regular intervals throughout their active seasons in the years 2001, 2002, and 2006. Four of the six subspecies of S. enterica were present in this population and were nonrandomly distributed among the lizards. In particular, S. enterica subsp. diarizonae was restricted to lizards living in the most shaded parts of the study site with an overstorey of Casuarina trees. Experiments undertaken to investigate the survival of S. enterica cells under seminatural conditions revealed that cell survival decreased with increased exposure to elevated temperatures and UV light. Among the three S. enterica subspecies tested, S. enterica subsp. diarizonae consistently had an average expected life span that was shorter than that observed for the other two subspecies. There was no indication in the data that there was any competitive dominance hierarchy among the S. enterica subspecies within individual hosts. Thus, the nonrandom distribution of S. enterica subspecies in this population of lizards appears to be driven by their different survival characteristics in the external environment. Copyright © 2015, American Society for Microbiology. All Rights Reserved.

  1. 7 CFR 1421.11 - Spot checks.

    Science.gov (United States)

    2010-01-01

    ... 7 Agriculture 10 2010-01-01 2010-01-01 false Spot checks. 1421.11 Section 1421.11 Agriculture... ASSISTANCE LOANS AND LOAN DEFICIENCY PAYMENTS FOR 2008 THROUGH 2012 General § 1421.11 Spot checks. (a) CCC... CCC access to the farm and storage facility as necessary to conduct collateral inspections, or “spot...

  2. 21 CFR 886.1435 - Maxwell spot.

    Science.gov (United States)

    2010-04-01

    ... 21 Food and Drugs 8 2010-04-01 2010-04-01 false Maxwell spot. 886.1435 Section 886.1435 Food and Drugs FOOD AND DRUG ADMINISTRATION, DEPARTMENT OF HEALTH AND HUMAN SERVICES (CONTINUED) MEDICAL DEVICES OPHTHALMIC DEVICES Diagnostic Devices § 886.1435 Maxwell spot. (a) Identification. A Maxwell spot is an AC...

  3. [Book review] The Eastern Screech Owl: Life History, Ecology and Behavior in the Suburbs and Countryside, by Frederick Gehlback

    Science.gov (United States)

    Hahn, D.C.

    1995-01-01

    Review of: Eastern Screech Owl: Life History, Ecology, and Behavior in the Suburbs and Countryside. Frederick R. Gehlbach. Issue 16; Issue 2008 of W. L. Moody Jr. Natural History Series. Texas A&M University Press; 1st edition (November 1994). ISBN: 0890966095. For ornithologists and ecologists alike, Fred Gehlbach's book promises to hold both interest and information value as a comprehensive study of the eastern screech owl (Otus asio hasbroucki). Gehlbach was intrigued with screech owls as a boy and encouraged as an undergraduate by William Hamilton, who underscored that in-depth studies of familiar backyard species can be as fascinating as those in exotic sites. Correspondence with another owl-aficionado, the late H. N. Southern, inspired the author's long-term study of screech owls in a woodland landscape in central Texas and led him to provide nest boxes to enhance his access and sample size. This book is based on observations over a 25-year period-beginning in 1967, with intensive study during an 11-year period (1976-1987) in Texas south of Waco, where Gehlbach teaches at Baylor University. The study represents observations on 659 screech owls, covering several generations of birds and entire lives of many individuals. Gehlbach compares screech owl nesting behavior in a rural versus suburban setting and includes chapters on food supplies and predation tactics; egg-laying, incubation, and parental behavior; vocalizations; and population structure and flux. He discusses why screech owls are widespread across the eastern half of North America and why they succeed among people in suburban environments, where they adapt as easily to mailboxes and porch columns as to natural tree cavities. The book mixes two approaches: on the one hand the dense style of a technical book in which the professional biologist can find information on many aspects of screech owl behavior, life history, and population, including tables, figures, summary statistics, results of statistical

  4. Isolation of Bartonella henselae and Two New Bartonella Subspecies, Bartonella koehlerae Subspecies boulouisii subsp. nov. and Bartonella koehlerae Subspecies bothieri subsp. nov. from Free-Ranging Californian Mountain Lions and Bobcats

    Science.gov (United States)

    Chomel, Bruno B.; Molia, Sophie; Kasten, Rickie W.; Borgo, Gina M.; Stuckey, Matthew J.; Maruyama, Soichi; Chang, Chao-chin; Haddad, Nadia; Koehler, Jane E.

    2016-01-01

    Domestic cats are the natural reservoir of Bartonella henselae, B. clarridgeiae and B. koehlerae. To determine the role of wild felids in the epidemiology of Bartonella infections, blood was collected from 14 free-ranging California mountain lions (Puma concolor) and 19 bobcats (Lynx rufus). Bartonella spp. were isolated from four (29%) mountain lions and seven (37%) bobcats. These isolates were characterized using growth characteristics, biochemical reactions, molecular techniques, including PCR-RFLP of selected genes or interspacer region, pulsed-field gel electrophoresis (PFGE), partial sequencing of several genes, and DNA-DNA hybridization. Two isolates were identical to B. henselae genotype II. All other isolates were distinguished from B. henselae and B. koehlerae by PCR-RFLP of the gltA gene using endonucleases HhaI, TaqI and AciI, with the latter two discriminating between the mountain lion and the bobcat isolates. These two novel isolates displayed specific PFGE profiles distinct from B. henselae, B. koehlerae and B. clarridgeiae. Sequences of amplified gene fragments from the three mountain lion and six bobcat isolates were closely related to, but distinct from, B. henselae and B. koehlerae. Finally, DNA-DNA hybridization studies demonstrated that the mountain lion and bobcat strains are most closely related to B. koehlerae. We propose naming the mountain lion isolates B. koehlerae subsp. boulouisii subsp. nov. (type strain: L-42-94), and the bobcat isolates B. koehlerae subsp. bothieri subsp. nov. (type strain: L-17-96), and to emend B. koehlerae as B. koehlerae subsp. koehlerae. The mode of transmission and the zoonotic potential of these new Bartonella subspecies remain to be determined. PMID:26981874

  5. Optimization of the Orbiting Wide-Angle Light Collectors (OWL) Mission for Charged-Particle and Neutrino Astronomy

    Science.gov (United States)

    Krizmanic, John F.; Mitchell, John W.; Streitmatter, Robert E.

    2013-01-01

    OWL [1] uses the Earth's atmosphere as a vast calorimeter to fully enable the emerging field of charged-particle astronomy with high-statistics measurements of ultra-high-energy cosmic rays (UHECR) and a search for sources of UHE neutrinos and photons. Confirmation of the Greisen-Zatsepin-Kuzmin (GZK) suppression above approx. 4 x 10(exp 19) eV suggests that most UHECR originate in astrophysical objects. Higher energy particles must come from sources within about 100 Mpc and are deflected by approx. 1 degree by predicted intergalactic/galactic magnetic fields. The Pierre Auger Array, Telescope Array and the future JEM-EUSO ISS mission will open charged-particle astronomy, but much greater exposure will be required to fully identify and measure the spectra of individual sources. OWL uses two large telescopes with 3 m optical apertures and 45 degree FOV in near-equatorial orbits. Simulations of a five-year OWL mission indicate approx. 10(exp 6) sq km/ sr/ yr of exposure with full aperture at approx. 6 x 10(exp 19) eV. Observations at different altitudes and spacecraft separations optimize sensitivity to UHECRs and neutrinos. OWL's stereo event reconstruction is nearly independent of track inclination and very tolerant of atmospheric conditions. An optional monocular mode gives increased reliability and can increase the instantaneous aperture. OWL can fully reconstruct horizontal and upward-moving showers and so has high sensitivity to UHE neutrinos. New capabilities in inflatable structures optics and silicon photomultipliers can greatly increase photon sensitivity, reducing the energy threshold for n detection or increasing viewed area using a higher orbit. Design trades between the original and optimized OWL missions and the enhanced science capabilities are described.

  6. Pacific and Atlantic Lepeophtheirus salmonis (Krøyer, 1838) are allopatric subspecies: Lepeophtheirus salmonis salmonis and L. salmonis oncorhynchi subspecies novo.

    Science.gov (United States)

    Skern-Mauritzen, Rasmus; Torrissen, Ole; Glover, Kevin Alan

    2014-03-14

    The salmon louse Lepeophtheirus salmonis is a parasitic copepod that infects salmonids in the Pacific and Atlantic oceans. Although considered as a single species, morphological and biological differences have been reported between lice from the two oceans. Likewise, studies based on nucleotide sequencing have demonstrated that sequence differences between Atlantic and Pacific L. salmonis are highly significant, albeit smaller than the divergence observed between congeneric copepod species. We demonstrated reproductive compatibility between L. salmonis from the two oceans and successfully established F2 hybrid strains using separate maternal lines from both the Pacific and Atlantic. The infection success for the F2 hybrid strains were similar to results typically observed for non hybrid lice strains in the rearing facility used. Lepeophtheirus salmonis COI and 16S sequences divergence between individuals from the Pacific and the Atlantic oceans was high compared to what may be expected within a copepod species and phylogenetic analysis showed that they consistently formed monophyletic clades representing their origin from the Pacific or Atlantic oceans. Lepeophtheirus salmonis from the Pacific and Atlantic oceans are reproductively compatible at least until adults at the F2 hybrid stage, and should not be regarded as separate species based on reproductive segregation or sequence divergence levels. Reported biological and genetic differences in L. salmonis seen in conjunction with the reported genetic diversity commonly observed between and within species demonstrate that Atlantic and Pacific L. salmonis should be regarded as two subspecies: Lepeophtheirus salmonis salmonis and L. salmonis oncorhynchi subsp. nov.

  7. Spot på samtalen:

    DEFF Research Database (Denmark)

    Danneris, Sophie; Jensen, Tanja Dall; Caswell, Dorte

    Spot på samtalen sætter fokus på det, der konkret foregår i samtaler mellem borgere og de beskæftigelsesfaglige medarbejdere i jobcentrene. Da de udsatte grupper i mange tilfælde er langt fra arbejdsmarkedet, er interessen rettet mod, hvilke forhold i kontakten med beskæftigelsessystemet, der...... har betydning hvilke indsatser ledige modtager, men også hvordan de modtager dem. Her rettes blikket mod den centrale del af den beskæftigelsespolitiske indsats som samtalerne udgør. I Spot på samtalen er blikket rettet mod de dynamikker, mønstre og mekanismer, der kommer i spil i samtalerne i...

  8. A Drosophila wing spot test

    International Nuclear Information System (INIS)

    Ayaki, Toshikazu; Yoshikawa, Isao; Niikawa, Norio; Hoshi, Masaharu.

    1986-01-01

    A Drosophila wing spot test system was used to investigate the effects of low doses of X-rays, gamma rays, and both 2.3 and 14.1 MeV neutrons on somatic chromosome mutation (SCM) induction. The incidence of SCM was significantly increased with any type of radiation, with evident linear dose-response relationship within the range of 3 to 20 cGy. It was estimated that relative biological effectiveness value for SCM induction of 2.3 MeV neutrons to X-rays and gamma rays is much higher than that of 14.1 MeV neutrons to those photons (2.4 vs 8.0). The Drosophila wing spot test system seems to become a promising in vivo experimental method for higher animals in terms of the lack of necessity for a marvelously large number of materials required in conventional test system. (Namekawa, K.)

  9. Managing Rocky Mountain spotted fever.

    Science.gov (United States)

    Minniear, Timothy D; Buckingham, Steven C

    2009-11-01

    Rocky Mountain spotted fever is caused by the tick-borne bacterium Rickettsia rickettsii. Symptoms range from moderate illness to severe illness, including cardiovascular compromise, coma and death. The disease is prevalent in most of the USA, especially during warmer months. The trademark presentation is fever and rash with a history of tick bite, although tick exposure is unappreciated in over a third of cases. Other signature symptoms include headache and abdominal pain. The antibiotic therapy of choice for R. rickettsii infection is doxycycline. Preventive measures for Rocky Mountain spotted fever and other tick-borne diseases include: wearing long-sleeved, light colored clothing; checking for tick attachment and removing attached ticks promptly; applying topical insect repellent; and treating clothing with permethrin.

  10. Measurement of laser spot quality

    Science.gov (United States)

    Milster, T. D.; Treptau, J. P.

    1991-01-01

    Several ways of measuring spot quality are compared. We examine in detail various figures of merit such as full width at half maximum (FWHM), full width at 1/(e exp 2) maximum, Strehl ratio, and encircled energy. Our application is optical data storage, but results can be applied to other areas like space communications and high energy lasers. We found that the optimum figure of merit in many cases is Strehl ratio.

  11. Sweet Spots and Door Stops

    Science.gov (United States)

    Thompson, Michael; Tsui, Stella; Leung, Chi Fan

    2011-01-01

    A sweet spot is referred to in sport as the perfect place to strike a ball with a racquet or bat. It is the point of contact between bat and ball where maximum results can be produced with minimal effort from the hand of the player. Similar physics can be applied to the less inspiring examples of door stops; the perfect position of a door stop is…

  12. Glare Spot Phase Doppler Anemometry

    OpenAIRE

    Hespel, Camille; Ren, Kuan Fang; Gréhan, Gérard; Onofri, Fabrice

    2006-01-01

    International audience; The Phase Doppler anemometry has been developed to measure simultaneously the velocity and the size of droplets. The measurement of the refractive index is also necessary since it depends on the temperature and the composition of the particle and its measurement permits both to increase the quality of the diameter measurement and to obtain information on the temperature and/or the composition of the droplets. In this paper, we introduce a Glare Spot Phase Doppler Anemo...

  13. Justifications shape ethical blind spots.

    Science.gov (United States)

    Pittarello, Andrea; Leib, Margarita; Gordon-Hecker, Tom; Shalvi, Shaul

    2015-06-01

    To some extent, unethical behavior results from people's limited attention to ethical considerations, which results in an ethical blind spot. Here, we focus on the role of ambiguity in shaping people's ethical blind spots, which in turn lead to their ethical failures. We suggest that in ambiguous settings, individuals' attention shifts toward tempting information, which determines the magnitude of their lies. Employing a novel ambiguous-dice paradigm, we asked participants to report the outcome of the die roll appearing closest to the location of a previously presented fixation cross on a computer screen; this outcome would determine their pay. We varied the value of the die second closest to the fixation cross to be either higher (i.e., tempting) or lower (i.e., not tempting) than the die closest to the fixation cross. Results of two experiments revealed that in ambiguous settings, people's incorrect responses were self-serving. Tracking participants' eye movements demonstrated that people's ethical blind spots are shaped by increased attention toward tempting information. © The Author(s) 2015.

  14. Chemical and isotopic studies of granitic Archean rocks, Owl Creek Mountains, Wyoming: Geochronology of an Archean granite, Owl Creek Mountains, Wyoming

    International Nuclear Information System (INIS)

    Hedge, C.E.; Simmons, K.R.; Stuckless, J.S.

    1986-01-01

    Rubidium-strontium analyses of whole-rock samples of an Archean granite from the Owl Creek Mountains, Wyo., indicate an intrusive age of 2640 ± 125 Ma. Muscovite-bearing samples give results suggesting that these samples were altered about 2300 Ma. This event may have caused extensive strontium loss from the rocks as potassium feldspar was altered to muscovite. Alteration was highly localized in nature as evidence by unaffected rubidium-strontium mineral ages in the Owl Creek Mountains area. Furthermore, the event probably involved a small volume of fluid relative to the volume of rock because whole-rock δ 18 O values of altered rocks are not distinct from those of unaltered rocks. In contrast to the rubidium-strontium whole-rock system, zircons from the granite have been so severely affected by the alteration event, and possibly by a late-Precambrian uplift event, that the zircon system yields little usable age information. The average initial 87 Sr/ 86 Sr (0.7033 ± 0.0042) calculated from the isochron intercept varies significantly. Calculated initial 87 Sr/ 86 Sr ratios for nine apparently unaltered samples yield a range of 0.7025 to 0.7047. These calculated initial ratios correlate positively with whole-rock δ 18 O values; and, therefore, the granite was probably derived from an isotopically heterogeneous source. The highest initial 87 Sr/ 86 Sr ratio is lower than the lowest reported for the metamorphic rocks intruded by the granite as it would have existed at 2640 Ma. Thus, the metamorphic sequence, at its current level of exposure, can represent no more than a part of the protolith for the granite

  15. Resistance Spot Welding of dissimilar Steels

    Directory of Open Access Journals (Sweden)

    Ladislav Kolařík

    2012-01-01

    Full Text Available This paper presents an analysis of the properties of resistance spot welds between low carbon steel and austenitic CrNi stainless steel. The thickness of the welded dissimilar materials was 2 mm. A DeltaSpot welding gun with a process tape was used for welding the dissimilar steels. Resistance spot welds were produced with various welding parameters (welding currents ranging from 7 to 8 kA. Light microscopy, microhardness measurements across the welded joints, and EDX analysis were used to evaluate the quality of the resistance spot welds. The results confirm the applicability of DeltaSpot welding for this combination of materials.

  16. Aerodynamic robustness in owl-inspired leading-edge serrations: a computational wind-gust model.

    Science.gov (United States)

    Rao, Chen; Liu, Hao

    2018-06-08

    Owls are a master to achieve silent flight in gliding and flapping flights under natural turbulent environments owing to their unique wing morphologies. While the leading-edge serrations are recently revealed, as a passive flow control micro-device, to play a crucial role in aerodynamic force production and sound suppression [25], the characteristics of wind-gust rejection associated with leading-edge serrations remain unclear. Here we address a large-eddy simulation (LES)-based study of aerodynamic robustness in owl-inspired leading-edge serrations, which is conducted with clean and serrated wing models through mimicking wind-gusts under a longitudinal fluctuation in free-stream inflow and a lateral fluctuation in pitch angle over a broad range of angles of attack (AoAs) over 0° ≤ Φ ≤ 20°. Our results show that the leading-edge serration-based passive flow control mechanisms associated with laminar-turbulent transition work effectively under fluctuated inflow and wing pitch, indicating that the leading-edge serrations are of potential gust fluctuation rejection or robustness in aerodynamic performance. Moreover, it is revealed that the tradeoff between turbulent flow control (i.e., aero-acoustic suppression) and force production in the serrated model holds independently to the wind-gust environments: poor at lower AoAs but capable of achieving equivalent aerodynamic performance at higher AoAs > 15o compared to the clean model. Our results reveal that the owl-inspired leading-edge serrations can be a robust micro-device for aero-acoustic control coping with unsteady and complex wind environments in biomimetic rotor designs for various fluid machineries. © 2018 IOP Publishing Ltd.

  17. The Binaural Interaction Component in Barn Owl (Tyto alba) Presents few Differences to Mammalian Data.

    Science.gov (United States)

    Palanca-Castan, Nicolas; Laumen, Geneviève; Reed, Darrin; Köppl, Christine

    2016-12-01

    The auditory brainstem response (ABR) is an evoked potential that reflects the responses to sound by brainstem neural centers. The binaural interaction component (BIC) is obtained by subtracting the sum of the monaural ABR responses from the binaural response. Its latency and amplitude change in response to variations in binaural cues. The BIC is thus thought to reflect the activity of binaural nuclei and is used to non-invasively test binaural processing. However, any conclusions are limited by a lack of knowledge of the relevant processes at the level of individual neurons. The aim of this study was to characterize the ABR and BIC in the barn owl, an animal where the ITD-processing neural circuits are known in great detail. We recorded ABR responses to chirps and to 1 and 4 kHz tones from anesthetized barn owls. General characteristics of the barn owl ABR were similar to those observed in other bird species. The most prominent peak of the BIC was associated with nucleus laminaris and is thus likely to reflect the known processes of ITD computation in this nucleus. However, the properties of the BIC were very similar to previously published mammalian data and did not reveal any specific diagnostic features. For example, the polarity of the BIC was negative, which indicates a smaller response to binaural stimulation than predicted by the sum of monaural responses. This is contrary to previous predictions for an excitatory-excitatory system such as nucleus laminaris. Similarly, the change in BIC latency with varying ITD was not distinguishable from mammalian data. Contrary to previous predictions, this behavior appears unrelated to the known underlying neural delay-line circuitry. In conclusion, the generation of the BIC is currently inadequately understood and common assumptions about the BIC need to be reconsidered when interpreting such measurements.

  18. Fabrication and characterization of ultrathin dextran layers: Time dependent nanostructure in aqueous environments revealed by OWLS.

    Science.gov (United States)

    Saftics, Andras; Kurunczi, Sándor; Szekrényes, Zsolt; Kamarás, Katalin; Khánh, Nguyen Quoc; Sulyok, Attila; Bősze, Szilvia; Horvath, Robert

    2016-10-01

    Surface coatings of the polysaccharide dextran and its derivatives are key ingredients especially in label-free biosensors for the suppression of non-specific binding and for receptor immobilization. Nevertheless, the nanostructure of these ultrathin coatings and its tailoring by the variation of the preparation conditions have not been profoundly characterized and understood. In this work carboxymethylated dextran (CMD) was prepared and used for fabricating ultrathin surface coatings. A grafting method based on covalent coupling to aminosilane- and epoxysilane-functionalized surfaces was applied to obtain thin CMD layers. The carboxyl moiety of the CMD was coupled to the aminated surface by EDC-NHS reagents, while CMD coupling through epoxysilane molecules was performed without any additional reagents. The surface analysis following the grafting procedures consisted of X-ray photoelectron spectroscopy (XPS), attenuated total reflection infrared spectroscopy (ATR-IR), spectroscopic ellipsometry, atomic force microscopy (AFM) and optical waveguide lightmode spectroscopy (OWLS). The XPS and AFM measurements showed that the grafting resulted in a very thin dextran layer of a few nanometers. The OWLS method allowed devising the structure of the interfacial dextran layers by the evaluation of the optogeometrical parameters. The alteration in the nanostructure of the CMD layer with the chemical composition of the silane coverage and the pH of the grafting solution was revealed by in situ OWLS, specifically, lain down chains were found to be prevalent on the surface under neutral and basic conditions on epoxysilylated surfaces. The developed methodologies allowed to design and fabricate nanometer scale CMD layers with well-controlled surface structure, which are very difficult to characterize in aqueous environments using present instrumentations and highly hydrated surface layers. Copyright © 2016 Elsevier B.V. All rights reserved.

  19. Long-term population dynamics of a managed burrowing owl colony

    Science.gov (United States)

    Barclay, John H.; Korfanta, Nicole M.; Kauffman, Matthew J.

    2011-01-01

    We analyzed the population dynamics of a burrowing owl (Athene cunicularia) colony at Mineta San Jose International Airport in San Jose, California, USA from 1990-2007. This colony was managed by using artificial burrows to reduce the occurrence of nesting owls along runways and within major airport improvement projects during the study period. We estimated annual reproduction in natural and artificial burrows and age-specific survival rates with mark-recapture techniques, and we estimated the relative contribution of these vital rates to population dynamics using a life table response experiment. The breeding colony showed 2 distinct periods of change: high population growth from 7 nesting pairs in 1991 to 40 pairs in 2002 and population decline to 17 pairs in 2007. Reproduction was highly variable: annual nesting success (pairs that raised =1 young) averaged 79% and ranged from 36% to 100%, whereas fecundity averaged 3.36 juveniles/pair and ranged from 1.43 juveniles/pair to 4.54 juveniles/pair. We estimated annual adult survival at 0.710 during the period of colony increase from 1996 to 2001 and 0.465 during decline from 2002 to 2007, but there was no change in annual survival of juveniles between the 2 time periods. Long-term population growth rate (lambda) estimated from average vital rates was lambdaa=1.072 with lambdai=1.288 during colony increase and lambdad=0.921 (DELTA lambda=0.368) during decline. A life table response experiment showed that change in adult survival rate during increasing and declining phases explained more than twice the variation in growth rate than other vital rates. Our findings suggest that management and conservation of declining burrowing owl populations should address factors that influence adult survival.

  20. Spot formation of radiation particles by electrochemical etching

    International Nuclear Information System (INIS)

    Nozaki, Tetsuya

    1999-01-01

    An electrochemical etching (ECE) spot formation from the top of chemical etching (CE) spot was confirmed by a series of experiments. One of polycarbonate (Iupilon) could not make the spot, because ECE spot had grown up before the microscope confirming the CE spot. Clear CEC spots by α-ray and neutron were found on Harzlas and Baryotrak, both improvements of CR-39. Under the same etching conditions, the growth of ECE spot on Harzlas was more rapid than Baryotrak, but both spots were almost the same. All CE spot by α-ray produced the CEC spots, but a part of CE circle spot by neutron formed them. (S.Y.)

  1. Compounding effects on nest-site dispersal of Barn Owls Tyto alba

    DEFF Research Database (Denmark)

    Huffeldt, Nicholas Per; Aggerholm, Iben Næs; Brandtberg, Nathia Hass

    2012-01-01

    of pulli ringed in Denmark (1921-2009; n=590) and glmms to test density, recovery time, ringing date and brood size for their influence on dispersal probability and recovery distance. Results The probability of being recovered >1 km from the nest-site as well as total recovery distances increased steeply...... from 0 to 100 days after ringing, being stable thereafter, and was also impacted by brood size. Owls ringed very early or late in the breeding season were more likely to be recovered nest-site at a recovery time where dispersal seemed to be completed....

  2. Computational prediction of protein hot spot residues.

    Science.gov (United States)

    Morrow, John Kenneth; Zhang, Shuxing

    2012-01-01

    Most biological processes involve multiple proteins interacting with each other. It has been recently discovered that certain residues in these protein-protein interactions, which are called hot spots, contribute more significantly to binding affinity than others. Hot spot residues have unique and diverse energetic properties that make them challenging yet important targets in the modulation of protein-protein complexes. Design of therapeutic agents that interact with hot spot residues has proven to be a valid methodology in disrupting unwanted protein-protein interactions. Using biological methods to determine which residues are hot spots can be costly and time consuming. Recent advances in computational approaches to predict hot spots have incorporated a myriad of features, and have shown increasing predictive successes. Here we review the state of knowledge around protein-protein interactions, hot spots, and give an overview of multiple in silico prediction techniques of hot spot residues.

  3. Computational Prediction of Hot Spot Residues

    Science.gov (United States)

    Morrow, John Kenneth; Zhang, Shuxing

    2013-01-01

    Most biological processes involve multiple proteins interacting with each other. It has been recently discovered that certain residues in these protein-protein interactions, which are called hot spots, contribute more significantly to binding affinity than others. Hot spot residues have unique and diverse energetic properties that make them challenging yet important targets in the modulation of protein-protein complexes. Design of therapeutic agents that interact with hot spot residues has proven to be a valid methodology in disrupting unwanted protein-protein interactions. Using biological methods to determine which residues are hot spots can be costly and time consuming. Recent advances in computational approaches to predict hot spots have incorporated a myriad of features, and have shown increasing predictive successes. Here we review the state of knowledge around protein-protein interactions, hot spots, and give an overview of multiple in silico prediction techniques of hot spot residues. PMID:22316154

  4. Experimental studies of adaptation in Clarkia xantiana. II. Fitness variation across a subspecies border.

    Science.gov (United States)

    Geber, Monica A; Eckhart, Vincent M

    2005-03-01

    Because the range boundary is the locale beyond which a taxon fails to persist, it provides a unique opportunity for studying the limits on adaptive evolution. Adaptive constraints on range expansion are perplexing in view of widespread ecotypic differentiation by habitat and region within a species' range (regional adaptation) and rapid evolutionary response to novel environments. In this study of two parapatric subspecies, Clarkia xantiana ssp. xantiana and C. x. ssp. parviflora, we compared the fitness of population transplants within their native region, in a non-native region within the native range, and in the non-native range to assess whether range expansion might be limited by a greater intensity of selection on colonists of a new range versus a new region within the range. The combined range of the two subspecies spans a west-to-east gradient of declining precipitation in the Sierra Nevada of California, with ssp. xantiana in the west being replaced by ssp. parviflora in the east. Both subspecies had significantly higher fitness in the native range (range adaptation), whereas regional adaptation was weak and was found only in the predominantly outcrossing ssp. xantiana but was absent in the inbreeding ssp. parvifilora. Because selection intensity on transplants was much stronger in the non-native range relative to non-native regions, there is a larger adaptive barrier to range versus regional expansion. Three of five sequential fitness components accounted for regional and range adaptation, but only one of them, survivorship from germination to flowering, contributed to both. Flower number contributed to regional adaptation in ssp. xantiana and fruit set (number of fruits per flower) to range adaptation. Differential survivorship of the two taxa or regional populations of ssp. xantiana in non-native environments was attributable, in part, to biotic interactions, including competition, herbivory, and pollination. For example, low fruit set in ssp. xantiana

  5. ESA uncovers Geminga's `hot spot'

    Science.gov (United States)

    2004-07-01

    16 July 2004 Astronomers using ESA’s X-ray observatory XMM-Newton have detected a small, bright ‘hot spot’ on the surface of the neutron star called Geminga, 500 light-years away. The hot spot is the size of a football field and is caused by the same mechanism producing Geminga’s X-ray tails. This discovery identifies the missing link between the X-ray and gamma-ray emission from Geminga. hi-res Size hi-res: 1284 kb Credits: ESA, P. Caraveo (IASF, Milan) Geminga's hot spot This figure shows the effects of charged particles accelerated in the magnetosphere of Geminga. Panel (a) shows an image taken with the EPIC instrument on board the XMM-Newton observatory. The bright tails, made of particles kicked out by Geminga’s strong magnetic field, trail the neutron star as it moves about in space. Panel (b) shows how electrically charged particles interact with Geminga’s magnetic field. For example, if electrons (blue) are kicked out by the star, positrons (in red) hit the star’s magnetic poles like in an ‘own goal’. Panel (c) illustrates the size of Geminga’s magnetic field (blue) compared to that of the star itself at the centre (purple). The magnetic field is tilted with respect to Geminga’s rotation axis (red). Panel (d) shows the magnetic poles of Geminga, where charged particles hit the surface of the star, creating a two-million degrees hot spot, a region much hotter than the surroundings. As the star spins on its rotation axis, the hot spot comes into view and then disappears, causing the periodic colour change seen by XMM-Newton. An animated version of the entire sequence can be found at: Click here for animated GIF [low resolution, animated GIF, 5536 KB] Click here for AVI [high resolution, AVI with DIVX compression, 19128 KB] hi-res Size hi-res: 371 kb Credits: ESA, P. Caraveo (IASF, Milan) Geminga's hot spot, panel (a) Panel (a) shows an image taken with the EPIC instrument on board the XMM-Newton observatory. The bright tails, made of

  6. Isolation of Mycobacterium avium subspecies paratuberculosis Reactive T-cells from Intestinal Biopsies of Crohn's Disease Patients

    Science.gov (United States)

    Crohn’s disease (CD) is a chronic granulomatous inflammation of the intestine. The etiology is still unknown. One hypothesis is that CD is caused by infection with Mycobacterium avium subspecies paratuberculosis (MAP) in genetically predisposed individuals. MAP causes a similar disease in ruminants,...

  7. Identical metabolic rate and thermal conductance in Rock Sandpiper (Calidris ptilocnemis) subspecies with contrasting nonbreeding life histories

    NARCIS (Netherlands)

    Ruthrauff, Dan; Dekinga, Anne; Gill, Robert E.; Piersma, Theunis

    Closely related species or subspecies can exhibit metabolic differences that reflect site-specific environmental conditions. Whether such differences represent fixed traits or flexible adjustments to local conditions, however, is difficult to predict across taxa. The nominate race of Rock Sandpiper

  8. Similar local, but different systemic, metabolomics responses of closely related pine subspecies to folivory by caterpillars of the processionary moth

    Energy Technology Data Exchange (ETDEWEB)

    Rivas-Ubach, A. [Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland WA USA; CSIC, Global Ecology Unit CREAF-CEAB-CSIC-UAB, Cerdanyola del Vallès, Catalonia Spain; Cerdanyola del Vallès, CREAF, Catalonia Spain; Sardans, J. [CSIC, Global Ecology Unit CREAF-CEAB-CSIC-UAB, Cerdanyola del Vallès, Catalonia Spain; Cerdanyola del Vallès, CREAF, Catalonia Spain; Hódar, J. A. [Grupo de Ecología Terrestre, Departamento de Biología Animal y Ecología, Facultad de Ciencias, Universidad de Granada, Granada Spain; Garcia-Porta, J. [Institute of Evolutionary Biology, CSIC-Universitat Pompeu Fabra, Barcelona Spain; Guenther, A. [Department of Earth System Science, University of California, Irvine CA USA; Global Change Research Centre, Academy of Sciences of the Czech Republic, Brno Czech Republic; Oravec, M. [Global Change Research Centre, Academy of Sciences of the Czech Republic, Brno Czech Republic; Urban, O. [Global Change Research Centre, Academy of Sciences of the Czech Republic, Brno Czech Republic; Peñuelas, J. [CSIC, Global Ecology Unit CREAF-CEAB-CSIC-UAB, Cerdanyola del Vallès, Catalonia Spain; Cerdanyola del Vallès, CREAF, Catalonia Spain; Leiss, K.

    2016-05-16

    Plants respond locally and systemically to herbivore attack. Most of the research conducted on plant-herbivore relationships at elemental and molecular levels have focused on nutrients or/and certain molecular compounds or specific families of defensive metabolites showing that herbivores tend to select plant individuals or species with higher nutrient concentrations and to avoid those with higher levels of phenolics and terpenes. Unfortunately, the defensive role of phenolics in conifers is still unclear. We performed stoichiometric and metabolomics, local and systemic, analyses in two subspecies of Pinus sylvestris under the herbivorous attack by the caterpillars of the pine processionary moth, an important pest in the Mediterranean Basin. Herbivorous attack was not associated with any of the elements analyzed. Both pine subspecies responded locally to folivory mainly by increasing the concentrations of various terpenes and phenolics. Systemic responses differed between subspecies and most of the metabolites presented intermediate concentrations between those of the affected parts and unattacked trees. Contrary as usually thought, foliar nutrient concentrations did not show to be a main factor of an alleged plant selection by adult female processionary moths for oviposition. Local increases in phenolics were more associated with antioxidant function for protection against oxidative damage produced by folivory. On the other hand, terpenes were directly related to defense against herbivores. Herbivory attack produced a general systemic shift in pines, including both primary and secondary metabolisms, that was, however, less intense and chemically different from the local responses. Subspecies responded similarly locally but differently to folivory at systemic level.

  9. Description of a new species and subspecies of Idalus Walker from Costa Rica, Honduras and Guatemala (Lepidoptera, Erebidae, Arctiinae, Arctiini)

    Science.gov (United States)

    Espinoza, Bernardo A.; Janzen, Daniel H.; Winnie Hallwachs;  J. Bolling Sullivan

    2013-01-01

    Abstract A new species and subspecies of Idalus Walker are described from Costa Rica, Honduras and Guatemala. Images of males and females and their genitalia are provided. Locality information and distribution maps for Costa Rica and for Guatemala are included. The biology and phylogeny of Idalus are discussed. PMID:23730178

  10. Use of intron-exonic marker in assessment of genetic diversity of two subspecies of Thymus daenensis

    Directory of Open Access Journals (Sweden)

    Ahmad Ismaili

    2013-11-01

    Full Text Available Study of genetic diversity in medicinal plant is very important for improvement and evolutionary variations. In this study, assessment of genetic diversity in two subspecies of Thymus daenensis was evaluated, using intron-exonic markers. Thirty primers produced 633 polymorphic bands (98% polymorphism. The highest polymorphic information content (PIC included ISJ5 and ISJ9 primers and the lowest PIC also included IT15-32 primer. The highest marker index (MI produced by IT10-6 primer. Results of Analysis of Molecular Variance (AMOVA showed that intra-sub specific variation was more than inter-sub specific variation. Dendrogram obtained from Cluster analysis, using NTSYS-pc software and UPGMA method based on Dice's similarity matrix, divided accessions into 4 groups. The maximum range of genetic similarity was observed between two accessions of sub-species daenensis. Two accessions of Fars and Semnan formed a separate group. Results showed that clustering based on molecular data and principal coordinate analysis had a medium alignment. Grouping based on cluster analysis also could separate two subspecies of Thymus daenensis. Results obtained from this study showed that intron-exonic markers had an effective potential in assessment of genetic relationships between the two sub-species of daenensis.

  11. CD4 T Cells From Intestinal Biopsies of Crohn's Disease Patients React to Mycobacterium avium subspecies paratuberculosis

    Science.gov (United States)

    The role of Mycobacterium avium subspecies paratuberculosis (MAP) in Crohn’s disease (CD) remains controversial. One issue that has been raised is the lack of data showing a cellular immune response to MAP. Earlier studies have mostly focused on responses in peripheral blood which have several limit...

  12. DNA barcoding of gypsy moths from China (Lepidoptera: Erebidae) reveals new haplotypes and divergence patterns within gypsy moth subspecies

    Science.gov (United States)

    Fang Chen; Youqing Luo; Melody A. Keena; Ying Wu; Peng Wu; Juan Shi

    2015-01-01

    The gypsy moth from Asia (two subspecies) is considered a greater threat to North America than European gypsy moth, because of a broader host range and females being capable of flight. Variation within and among gypsy moths from China (nine locations), one of the native countries of Asian gypsy moth, were compared using DNA barcode sequences (658 bp of mtDNA cytochrome...

  13. Characterization of the inflammatory phenotype of Mycobacterium avium subspecies paratuberculosis using a novel cell culture passage model

    Science.gov (United States)

    Understanding the pathogenic mechanisms and host responses to Johne’s disease, a chronic enteritis of ruminants caused by Mycobacterium avium subspecies paratuberculosis (MAP), is complicated by the multifaceted disease progression, late-onset host reaction, and the lack of ex vivo infection models ...

  14. Two new species and one new subspecies of the South American catfish genus Corydoras (Pisces, Siluriformes, Callichthyidae)

    NARCIS (Netherlands)

    Nijssen, H.

    1971-01-01

    This paper contains descriptions and figures of two new species of Corydoras Lacépède, 1803, C. weitzmani from Peru, and C. blochi from Guyana, Brazil, and Venezuela. The latter species is represented by two subspecies, C. blochi blochi from the Amazonas, Branco, Orinoco, and Essequibo drainages,

  15. Small mammals in the diet of barn owls, Tyto alba (Aves: Strigiformes along the mid-Araguaia river in central Brazil

    Directory of Open Access Journals (Sweden)

    Rita G. Rocha

    2011-12-01

    Full Text Available We collected and analyzed 286 Barn owl, Tyto alba (Scopoli, 1769, pellets from two nests in different environments along the mid-Araguaia River in central Brazil. Our analyses revealed that these owls feed mainly on small mammals, especially rodents. Owls from the riverbanks at Fazenda Santa Fé had a more diverse diet, preying mainly on rodents that typically inhabit riparian grasslands - Holochilus sciureus Wagner, 1842 - and forests - Hylaeamys megacephalus (Fischer, 1814 and Oecomys spp., which probably also occur in forest borders or clearings. On the other hand, owls from an agroecosystem at Fazenda Lago Verde preyed mostly on rodent species common in these agrarian fields, Calomys tocantinsi Bonvicino, Lima & Almeida, 2003. Additionally, we compared small mammal richness estimates based on the analysis of owl pellets with estimates from live-trapping in the same areas. Owl pellets revealed two rodent species undetected by live traps - Euryoryzomys sp. and Rattus rattus (Linnaeus, 1758 - and four rodent species were trapped, but not found in owl pellets - Oecomys roberti Thomas, 1904, Pseudoryzomys simplex (Winge, 1887, Rhipidomys ipukensis Rocha, B.M.A. Costa & L.P. Costa, 2011, and Makalata didelphoides (Desmarest, 1817. Traps yielded higher species richness, but these two methods complement each other for surveying small rodents.

  16. Flight activity and responses to climatic conditions of two subspecies of Melipona marginata Lepeletier (Apidae, Meliponinae)

    Energy Technology Data Exchange (ETDEWEB)

    Kleinert-Giovannini, A; Imperatriz-Fonseca, V L

    1986-01-01

    The flight activity of two colonies of M. m. marginata and six colonies of M. m. obscurior was studied in Sao Paulo, Brazil during three periods in 1981-1983. All colonies were hived except for one colony of M. m. obscurior which nested in a hollow tree. The two subspecies showed the same responses to the climatic factors analyzed. Flight activity was correlated positively with temperature and negatively with RH. In favorable conditions foraging took place throughout the day but both species were most active between 11 and 13 h. In the last observation period (October 1982-January 1983), when only two obscurior colonies were studied, flight activity was not correlated to RH, occurring even when RH was unfavorably high. This was a very rainy season, and it is suggested that the behavior of the bees indicates a flexible response to prevailing weather conditions.

  17. [Histo-anatomical researches of two subspecies of Lavandula angustifolia Mill].

    Science.gov (United States)

    Robu, Silvia; Galeş, Ramona; Toma, C; Stănescu, Ursula

    2011-01-01

    The structure of the inflorescences of two subspecies of Lavandula angustifolia sL. angustifolia ssp. angustifolia and. L. angustifolia ssp. pyrenaica (D.C.) Guineaţ was studied to determine the range of variation in certain histo-anatomical characters. The flower and leaf structure has been analysed on cross and superficial section using the usual techniques and methods applied in plant histo-anatomical research. In cross-section, inflorescence axis has a squared-shape contour, with four proeminent ribs. On the epiderme of inflorescence axis there are present stomata, trichoms and secretory hairs. The trichoms are pluricelullar and T-branched. The secretory hairs have a short pedicel and a uni-or bicellular head. The study revealed that there are only quantitative differences, referring to the degree of sclerification and lignification of mechanical elements and the size of the vascular bundles.

  18. The correct name for a subspecies of Oenothera fruticosa L. (Onagraceae

    Directory of Open Access Journals (Sweden)

    Warren Wagner

    2014-01-01

    Full Text Available In 1978 when Straley adopted the name Oenothera fruticosa L. subsp. glauca (Michx. Straley for one of the two recognized subspecies of O. fruticosa it was the correct name for this taxon; however, since that time the botanical code has changed so that now an autonym is treated aspriority over the name or names of the same date and rank that established it. This change means that since 1981 O. fruticosa subsp. glauca was no longer the correct name. The appropriate combination for it is made here as O. fruticosa L. subsp. tetragona (Roth W.L. Wagner. Original material for the basionym, O. tetragona, is no longer extant so a neotype is designated.

  19. The correct name for a subspecies of Oenothera fruticosa L. (Onagraceae).

    Science.gov (United States)

    Wagner, Warren L

    2014-01-01

    In 1978 when Straley adopted the name Oenothera fruticosa L. subsp. glauca (Michx.) Straley for one of the two recognized subspecies of O. fruticosa it was the correct name for this taxon; however, since that time the botanical code has changed so that now an autonym is treated as having priority over the name or names of the same date and rank that established it. This change means that since 1981 O. fruticosa subsp. glauca was no longer the correct name. The appropriate combination for it is made here as O. fruticosa L. subsp. tetragona (Roth) W.L. Wagner. Original material for the basionym, O. tetragona, is no longer extant so a neotype is designated.

  20. Life history attributes of Arizona Grasshopper Sparrow (Ammodramus savannarum ammolegus) and comparisons with other North American subspecies

    Science.gov (United States)

    Ruth, Janet M.

    2017-01-01

    Ammodramus savannarum ammolegus—commonly referred to as the Arizona Grasshopper Sparrow—occurs in the desert and plains grasslands of southeastern Arizona, southwestern New Mexico, and northern Sonora, Mexico. Although a subspecies of conservation concern, this is the first intensive study of its life history and breeding ecology, providing baseline data and facilitating comparisons with other North American Grasshopper Sparrow subspecies. Specifically, I found A. s. ammolegus males generally weighed less than other subspecies (16.0 ± 0.8 g) but with intermediate exposed culmen length (11.6 ± 0.5 mm) and wing chord length similar to the other two migratory subspecies (62.7 ± 1.5 mm). Territory size for A. s. ammolegus was 0.72 ± 0.37 ha, with some variation between sites and among years, possibly indicating variation in habitat quality across spatial and temporal scales. The return rate for A. s. ammolegus males was 39.2%. Nest initiation for A. s. ammolegus was early to mid-July after the monsoons had begun. Domed nests were constructed on the ground, primarily under native bunch grasses, and frequently with a tunnel extending beyond the nest rim, with nest openings oriented north. Clutch size was 3.97 ± 0.68, with no evidence of Brown-headed Cowbird (Molothrus ater) nest parasitism. Extreme climate factors in the arid Southwest may have affected the life history and morphology of A. s. ammolegus as compared to other subspecies, influencing body size and mass, culmen length, breeding phenology, and nest orientation. Other geographic variation occurred in return rates, clutch size, and nest parasitism rates. The baseline data for A. s. ammolegus obtained in this study will inform future taxonomic and ecological studies as well as conservation planning. Comparisons of A. s. ammolegus morphometrics with those of other subspecies will assist field biologists in distinguishing among subspecies where they overlap, especially on wintering grounds.

  1. Seasonal and geographic variation of southern blue whale subspecies in the Indian Ocean.

    Directory of Open Access Journals (Sweden)

    Flore Samaran

    Full Text Available Understanding the seasonal movements and distribution patterns of migratory species over ocean basin scales is vital for appropriate conservation and management measures. However, assessing populations over remote regions is challenging, particularly if they are rare. Blue whales (Balaenoptera musculus spp are an endangered species found in the Southern and Indian Oceans. Here two recognized subspecies of blue whales and, based on passive acoustic monitoring, four "acoustic populations" occur. Three of these are pygmy blue whale (B.m. brevicauda populations while the fourth is the Antarctic blue whale (B.m. intermedia. Past whaling catches have dramatically reduced their numbers but recent acoustic recordings show that these oceans are still important habitat for blue whales. Presently little is known about the seasonal movements and degree of overlap of these four populations, particularly in the central Indian Ocean. We examined the geographic and seasonal occurrence of different blue whale acoustic populations using one year of passive acoustic recording from three sites located at different latitudes in the Indian Ocean. The vocalizations of the different blue whale subspecies and acoustic populations were recorded seasonally in different regions. For some call types and locations, there was spatial and temporal overlap, particularly between Antarctic and different pygmy blue whale acoustic populations. Except on the southernmost hydrophone, all three pygmy blue whale acoustic populations were found at different sites or during different seasons, which further suggests that these populations are generally geographically distinct. This unusual blue whale diversity in sub-Antarctic and sub-tropical waters indicates the importance of the area for blue whales in these former whaling grounds.

  2. Subspecies of Hypolepis rugosula (Dennstaedtiaceae; Pteridophyta around the world: morphological and biogeographic perspectives

    Directory of Open Access Journals (Sweden)

    Pedro Bond Schwartsburd

    2014-06-01

    Full Text Available The "Hypolepis rugosula complex" has been the subject of great debate among pteridologists: some have considered H. rugosula a single subcosmopolitan (or circum-Antarctic species, whereas others have considered it a species-complex, encompassing several species. In the 1920s and 1930s, four geographically distinct varietiesof H. rugosula were recognized. In this work, we present a new taxonomy (with new combinations and statuses, as well as typification and full synonymy, together with complete distribution data for the species, with an infraspecific classification based on morphological and biogeographic perspectives. Hypolepis rugosula occurs in southern temperate regions and high-elevation tropical regions of the Americas, Africa (including Madagascar, Oceania and the Philippines, as well as in some isolated oceanic volcanic islands (e.g., Saint Helena and Tristan da Cunha. Here, 15 geographically distinct subspecies are recognized. All subspecies are geographically segregated from each other, except in New Zealand, where two occur sympatrically-possibly due to two different arrival and colonization times. Four patterns of "indument" (referring to catenate and glandular hairs collectively are distinguished. Different lineages are successful in their respective habitats; we observed two lineages with different ploidy levels (tetraploid and octoploid. Although long-distance dispersal is the best explanation for the extant distribution of H. rugosula;we do not exclude vicariance as a possible explanation for their occurrence on the land masses that were once united as Gondwana. Therefore, we are assuming that a fern species could remain unchanged for more than 70 Myr, and we are adopting the refugia theory, albeit with a different focus.

  3. The effect of surgical subspecialization on outcomes in peptic ulcer disease complicated by perforation and bleeding.

    Science.gov (United States)

    Robson, Andrew J; Richards, Jennifer M J; Ohly, Nicholas; Nixon, Stephen J; Paterson-Brown, Simon

    2008-07-01

    Emergency surgical services in Edinburgh were restructured in July 2002 to deliver subspecialist management of colorectal and upper-gastrointestinal emergencies on separate sites. The effect of emergency subspecialization on outcome from perforated and bleeding peptic ulceration was assessed. All patients admitted with complicated peptic ulceration (January 2000-February 2005) were identified from a prospectively compiled database. Perforation: 148 patients were admitted with perforation before the service reorganization (period A - 31 months) of whom 126 (85.1%) underwent surgery; 135 patients were admitted in period B (31 months) of whom 114 (84.4%) were managed operatively. The in-hospital mortality was lower in period B (14/135, 10.4%) than period A (30/148, 20.3%; P = 0.023; relative risk (RR), 0.51; 95% confidence interval (CI), 0.28-0.91). There was a significantly higher rate of gastric resection in the second half of the study (period A 1/126 vs. period B 8/114; P = 0.015; RR, 8.84; 95% CI, 1.48-54.34). Length of hospital stay was similar for both groups. Bleeding: 51 patients underwent operative management of bleeding peptic ulceration in period A and 51 in period B. There were no differences in length of stay or mortality between these two groups. Restructuring of surgical services with emergency subspecialization was associated with lower mortality for perforated peptic ulceration. Subspecialist experience, intraoperative decision-making, and improved postoperative care have all contributed to this improvement.

  4. Foodborne outbreak of Salmonella subspecies IV infections associated with contamination from bearded dragons.

    Science.gov (United States)

    Lowther, S A; Medus, C; Scheftel, J; Leano, F; Jawahir, S; Smith, K

    2011-12-01

    Approximately 1.4 million Salmonella infections and 400 deaths occur annually in the United States. Approximately 6% of human Salmonella cases are thought to be associated with reptiles; Salmonella enterica subspecies IV is primarily reptile-associated. During 1-4 December, 2009, three isolates of Salmonella IV 6,7:z4,z24:- with indistinguishable pulsed-field gel electrophoresis (PFGE) patterns were identified through Minnesota Department of Health laboratory-based surveillance. None of the three patients associated with the isolates reported reptile contact; however, all had attended the same potluck dinner. Dinner attendees were asked questions regarding illness history, foods they prepared for and consumed at the event, and pet ownership. Cases were defined as illness in a person who had eaten potluck food and subsequently experienced fever and diarrhoea (three or more loose stools in 24 h) or laboratory-confirmed infection with Salmonella IV matching the outbreak PFGE subtype. Nineteen days after the event, environmental samples were collected from a food preparer's house where two pet bearded dragons were kept. Sixty-six of 73 potluck food consumers were interviewed; 19 cases were identified; 18 persons reported illness but did not meet the case definition. Median incubation period was 19 h (range: 3-26 h). Median duration of illness was 5 days (range: 1-11 days). Consumption of gravy, prepared by the bearded dragons' asymptomatic owner, was associated with illness (16/32 exposed versus 1/12 unexposed; risk ratio: 6.0; exact P = 0.02). Salmonella Labadi was recovered from 10 samples, including from one bearded dragon, the bathroom door knob and sink drain, and the kitchen sink drain. The outbreak PFGE subtype of Salmonella subspecies IV was isolated from vacuum-cleaner bag contents. This foodborne outbreak probably resulted from environmental contamination from bearded dragons. Reptiles pose a community threat when food for public consumption is prepared in

  5. Sequencing and comparative genome analysis of two pathogenic Streptococcus gallolyticus subspecies: genome plasticity, adaptation and virulence.

    Directory of Open Access Journals (Sweden)

    I-Hsuan Lin

    Full Text Available Streptococcus gallolyticus infections in humans are often associated with bacteremia, infective endocarditis and colon cancers. The disease manifestations are different depending on the subspecies of S. gallolyticus causing the infection. Here, we present the complete genomes of S. gallolyticus ATCC 43143 (biotype I and S. pasteurianus ATCC 43144 (biotype II.2. The genomic differences between the two biotypes were characterized with comparative genomic analyses. The chromosome of ATCC 43143 and ATCC 43144 are 2,36 and 2,10 Mb in length and encode 2246 and 1869 CDS respectively. The organization and genomic contents of both genomes were most similar to the recently published S. gallolyticus UCN34, where 2073 (92% and 1607 (86% of the ATCC 43143 and ATCC 43144 CDS were conserved in UCN34 respectively. There are around 600 CDS conserved in all Streptococcus genomes, indicating the Streptococcus genus has a small core-genome (constitute around 30% of total CDS and substantial evolutionary plasticity. We identified eight and five regions of genome plasticity in ATCC 43143 and ATCC 43144 respectively. Within these regions, several proteins were recognized to contribute to the fitness and virulence of each of the two subspecies. We have also predicted putative cell-surface associated proteins that could play a role in adherence to host tissues, leading to persistent infections causing sub-acute and chronic diseases in humans. This study showed evidence that the S. gallolyticus still possesses genes making it suitable in a rumen environment, whereas the ability for S. pasteurianus to live in rumen is reduced. The genome heterogeneity and genetic diversity among the two biotypes, especially membrane and lipoproteins, most likely contribute to the differences in the pathogenesis of the two S. gallolyticus biotypes and the type of disease an infected patient eventually develops.

  6. Watermarking spot colors in packaging

    Science.gov (United States)

    Reed, Alastair; Filler, TomáÅ.¡; Falkenstern, Kristyn; Bai, Yang

    2015-03-01

    In January 2014, Digimarc announced Digimarc® Barcode for the packaging industry to improve the check-out efficiency and customer experience for retailers. Digimarc Barcode is a machine readable code that carries the same information as a traditional Universal Product Code (UPC) and is introduced by adding a robust digital watermark to the package design. It is imperceptible to the human eye but can be read by a modern barcode scanner at the Point of Sale (POS) station. Compared to a traditional linear barcode, Digimarc Barcode covers the whole package with minimal impact on the graphic design. This significantly improves the Items per Minute (IPM) metric, which retailers use to track the checkout efficiency since it closely relates to their profitability. Increasing IPM by a few percent could lead to potential savings of millions of dollars for retailers, giving them a strong incentive to add the Digimarc Barcode to their packages. Testing performed by Digimarc showed increases in IPM of at least 33% using the Digimarc Barcode, compared to using a traditional barcode. A method of watermarking print ready image data used in the commercial packaging industry is described. A significant proportion of packages are printed using spot colors, therefore spot colors needs to be supported by an embedder for Digimarc Barcode. Digimarc Barcode supports the PANTONE spot color system, which is commonly used in the packaging industry. The Digimarc Barcode embedder allows a user to insert the UPC code in an image while minimizing perceptibility to the Human Visual System (HVS). The Digimarc Barcode is inserted in the printing ink domain, using an Adobe Photoshop plug-in as the last step before printing. Since Photoshop is an industry standard widely used by pre-press shops in the packaging industry, a Digimarc Barcode can be easily inserted and proofed.

  7. Rapid differentiation of Francisella species and subspecies by fluorescent in situ hybridization targeting the 23S rRNA

    Directory of Open Access Journals (Sweden)

    Trebesius Karlheinz

    2010-03-01

    Full Text Available Abstract Background Francisella (F. tularensis is the causative agent of tularemia. Due to its low infectious dose, ease of dissemination and high case fatality rate, F. tularensis was the subject in diverse biological weapons programs and is among the top six agents with high potential if misused in bioterrorism. Microbiological diagnosis is cumbersome and time-consuming. Methods for the direct detection of the pathogen (immunofluorescence, PCR have been developed but are restricted to reference laboratories. Results The complete 23S rRNA genes of representative strains of F. philomiragia and all subspecies of F. tularensis were sequenced. Single nucleotide polymorphisms on species and subspecies level were confirmed by partial amplification and sequencing of 24 additional strains. Fluorescent In Situ Hybridization (FISH assays were established using species- and subspecies-specific probes. Different FISH protocols allowed the positive identification of all 4 F. philomiragia strains, and more than 40 F. tularensis strains tested. By combination of different probes, it was possible to differentiate the F. tularensis subspecies holarctica, tularensis, mediasiatica and novicida. No cross reactivity with strains of 71 clinically relevant bacterial species was observed. FISH was also successfully applied to detect different F. tularensis strains in infected cells or tissue samples. In blood culture systems spiked with F. tularensis, bacterial cells of different subspecies could be separated within single samples. Conclusion We could show that FISH targeting the 23S rRNA gene is a rapid and versatile method for the identification and differentiation of F. tularensis isolates from both laboratory cultures and clinical samples.

  8. Collaboration spotting for dental science.

    Science.gov (United States)

    Leonardi, E; Agocs, A; Fragkiskos, S; Kasfikis, N; Le Goff, J M; Cristalli, M P; Luzzi, V; Polimeni, A

    2014-10-06

    The goal of the Collaboration Spotting project is to create an automatic system to collect information about publications and patents related to a given technology, to identify the key players involved, and to highlight collaborations and related technologies. The collected information can be visualized in a web browser as interactive graphical maps showing in an intuitive way the players and their collaborations (Sociogram) and the relations among the technologies (Technogram). We propose to use the system to study technologies related to Dental Science. In order to create a Sociogram, we create a logical filter based on a set of keywords related to the technology under study. This filter is used to extract a list of publications from the Web of Science™ database. The list is validated by an expert in the technology and sent to CERN where it is inserted in the Collaboration Spotting database. Here, an automatic software system uses the data to generate the final maps. We studied a set of recent technologies related to bone regeneration procedures of oro--maxillo--facial critical size defects, namely the use of Porous HydroxyApatite (HA) as a bone substitute alone (bone graft) or as a tridimensional support (scaffold) for insemination and differentiation ex--vivo of Mesenchymal Stem Cells. We produced the Sociograms for these technologies and the resulting maps are now accessible on--line. The Collaboration Spotting system allows the automatic creation of interactive maps to show the current and historical state of research on a specific technology. These maps are an ideal tool both for researchers who want to assess the state--of--the--art in a given technology, and for research organizations who want to evaluate their contribution to the technological development in a given field. We demonstrated that the system can be used for Dental Science and produced the maps for an initial set of technologies in this field. We now plan to enlarge the set of mapped

  9. Collaboration Spotting for oral medicine.

    Science.gov (United States)

    Leonardi, E; Agocs, A; Fragkiskos, S; Kasfikis, N; Le Goff, J M; Cristalli, M P; Luzzi, V; Polimeni, A

    2014-09-01

    The goal of the Collaboration Spotting project is to create an automatic system to collect information about publications and patents related to a given technology, to identify the key players involved, and to highlight collaborations and related technologies. The collected information can be visualized in a web browser as interactive graphical maps showing in an intuitive way the players and their collaborations (Sociogram) and the relations among the technologies (Technogram). We propose to use the system to study technologies related to oral medicine. In order to create a sociogram, we create a logical filter based on a set of keywords related to the technology under study. This filter is used to extract a list of publications from the Web of Science™ database. The list is validated by an expert in the technology and sent to CERN where it is inserted in the Collaboration Spotting database. Here, an automatic software system uses the data to generate the final maps. We studied a set of recent technologies related to bone regeneration procedures of oro-maxillo-facial critical size defects, namely the use of porous hydroxyapatite (HA) as a bone substitute alone (bone graft) or as a tridimensional support (scaffold) for insemination and differentiation ex vivo of mesenchymal stem cells. We produced the sociograms for these technologies and the resulting maps are now accessible on-line. The Collaboration Spotting system allows the automatic creation of interactive maps to show the current and historical state of research on a specific technology. These maps are an ideal tool both for researchers who want to assess the state-of-the-art in a given technology, and for research organizations who want to evaluate their contribution to the technological development in a given field. We demonstrated that the system can be used in oral medicine as is produced the maps for an initial set of technologies in this field. We now plan to enlarge the set of mapped technologies in

  10. Pre-Migratory Movements by Juvenile Burrowing Owls in a Patchy Landscape

    Directory of Open Access Journals (Sweden)

    L. Danielle. Todd

    2007-12-01

    Full Text Available Dispersal is a fundamental aspect of population dynamics, and can have direct implications on processes such as the colonization of habitat patches. Pre-migratory movements, landscape fragmentation, and body condition have all been hypothesized as key factors influencing dispersal in birds, but little direct evidence exists to support these ideas. We used radio-telemetry and supplementary feeding to test if body condition or landscape pattern influenced pre-migratory movements of juvenile Burrowing Owls (Athene cunicularia in a fragmented landscape. We categorized grassland patches as either large (≥95 ha or small and isolated (≤58 ha and ≥1.5 km to next nearest grassland patch, and young owls were either provided supplemental food as nestlings or not. Owlets receiving supplemental food and residing in large grassland patches moved a greater maximum distance from their nest than similarly fed owlets residing in small patches (large = 1605 ± 443 m; small = 373 ± 148 m. In contrast, non-supplemented owlets from large and small patches did not differ in their maximum distance moved from the nest (large = 745 ± 307 m; small 555 ± 286 m. Only two of 32 individuals from small patches moved >800 m, whereas ten of 23 owlets from large patches moved >800 m. In addition, owlets from large patches continued to move farther and farther from their nest before migration, whereas owlets in small, isolated patches ultimately moved

  11. Endogenous New World primate type C viruses isolated from owl monkey (Aotus trivirgatus) kidney cell line.

    Science.gov (United States)

    Todaro, G J; Sherr, C J; Sen, A; King, N; Daniel, M D; Fleckenstein, B

    1978-01-01

    A type C virus (OMC-1) detected in a culture of owl monkey kidney cells resembled typical type C viruses morphologically, but was slightly larger than previously characterized mammalian type C viruses. OMC-1 can be transmitted to bat lung cells and cat embryo fibroblasts. The virions band at a density of 1.16 g/ml in isopycnic sucrose density gradients and contain reverse transcriptase and a 60-65S RNA genome composed of approximately 32S subunits. The reverse transcriptase is immunologically and biochemically distinct from the polymerases of othe retroviruses. Radioimmunoassays directed to the interspecies antigenic determinants of the major structure proteins of other type C viruses do not detect a related antigen in OMC-1. Nucleic acid hybridization experiments using labeled viral genomic RNA or proviral cDNA transcripts to normal cellular DNA of different species show that OMC-1 is an endogenous virus with multiple virogene copies (20-50 per haploid genome) present in normal owl monkey cells and is distinct from previously isolated type C and D viruses. Sequences related to the OMC-1 genome can be detected in other New World monkeys. Thus, similar to the Old World primates (e.g., baboons as a prototype), the New World monkeys contain endogenous type C viral genes that appear to have been transmitted in the primate germ line. Images PMID:76312

  12. Integrating reasoning and clinical archetypes using OWL ontologies and SWRL rules.

    Science.gov (United States)

    Lezcano, Leonardo; Sicilia, Miguel-Angel; Rodríguez-Solano, Carlos

    2011-04-01

    Semantic interoperability is essential to facilitate the computerized support for alerts, workflow management and evidence-based healthcare across heterogeneous electronic health record (EHR) systems. Clinical archetypes, which are formal definitions of specific clinical concepts defined as specializations of a generic reference (information) model, provide a mechanism to express data structures in a shared and interoperable way. However, currently available archetype languages do not provide direct support for mapping to formal ontologies and then exploiting reasoning on clinical knowledge, which are key ingredients of full semantic interoperability, as stated in the SemanticHEALTH report [1]. This paper reports on an approach to translate definitions expressed in the openEHR Archetype Definition Language (ADL) to a formal representation expressed using the Ontology Web Language (OWL). The formal representations are then integrated with rules expressed with Semantic Web Rule Language (SWRL) expressions, providing an approach to apply the SWRL rules to concrete instances of clinical data. Sharing the knowledge expressed in the form of rules is consistent with the philosophy of open sharing, encouraged by archetypes. Our approach also allows the reuse of formal knowledge, expressed through ontologies, and extends reuse to propositions of declarative knowledge, such as those encoded in clinical guidelines. This paper describes the ADL-to-OWL translation approach, describes the techniques to map archetypes to formal ontologies, and demonstrates how rules can be applied to the resulting representation. We provide examples taken from a patient safety alerting system to illustrate our approach. Copyright © 2010 Elsevier Inc. All rights reserved.

  13. Integration of an OWL-DL knowledge base with an EHR prototype and providing customized information.

    Science.gov (United States)

    Jing, Xia; Kay, Stephen; Marley, Tom; Hardiker, Nicholas R

    2014-09-01

    When clinicians use electronic health record (EHR) systems, their ability to obtain general knowledge is often an important contribution to their ability to make more informed decisions. In this paper we describe a method by which an external, formal representation of clinical and molecular genetic knowledge can be integrated into an EHR such that customized knowledge can be delivered to clinicians in a context-appropriate manner.Web Ontology Language-Description Logic (OWL-DL) is a formal knowledge representation language that is widely used for creating, organizing and managing biomedical knowledge through the use of explicit definitions, consistent structure and a computer-processable format, particularly in biomedical fields. In this paper we describe: 1) integration of an OWL-DL knowledge base with a standards-based EHR prototype, 2) presentation of customized information from the knowledge base via the EHR interface, and 3) lessons learned via the process. The integration was achieved through a combination of manual and automatic methods. Our method has advantages for scaling up to and maintaining knowledge bases of any size, with the goal of assisting clinicians and other EHR users in making better informed health care decisions.

  14. Reconnaissance and economic geology of Copper Mountain metamorphic complex, Owl Creek Mountains, Wyoming

    International Nuclear Information System (INIS)

    Hausel, W.D.

    1983-01-01

    The Copper Mountain metamorphic complex lies within a westerly trending belt of Precambrian exposures known as the Owl Creek Mountains uplift. The metamorphic complex at Copper Mountain is part of a larger complex known as the Owl Creek Mountains greenstone belt. Until more detailed mapping and petrographic studies can be completed, the Copper Mountain area is best referred to as a complex, even though it has some characteristics of a greestone belt. At least three episodes of Precambrian deformation have affected the supracrustals, and two have disturbed the granites. The final Precambrian deformation event was preceded by a weak thermal event expressed by retrogressive metamorphism and restricted metasomatic alteration. During this event, a second phase of pegmatization was accompanied by hydrothermal solutions. During the Laramide orogeny, Copper Mountain was again modified by deformation. Laramide deformation produced complex gravity faults and keystone grabens. Uranium deposits were formed following major Laramide deformation. The genesis of these deposits is attributable to either the leaching of granites or the leaching of overlying tuffaceous sediments during the Tertiary. Production of metals and industrial minerals has been limited, although some gold, copper, silver, tungsten, beryl, feldspar, and lithium ore have been shipped from Copper Mountain. A large amount of uranium was produced from the Copper Mountain district in the 1950s

  15. Hunting Increases Phosphorylation of Calcium/Calmodulin-Dependent Protein Kinase Type II in Adult Barn Owls

    Directory of Open Access Journals (Sweden)

    Grant S. Nichols

    2015-01-01

    Full Text Available Juvenile barn owls readily adapt to prismatic spectacles, whereas adult owls living under standard aviary conditions do not. We previously demonstrated that phosphorylation of the cyclic-AMP response element-binding protein (CREB provides a readout of the instructive signals that guide plasticity in juveniles. Here we investigated phosphorylation of calcium/calmodulin-dependent protein kinase II (pCaMKII in both juveniles and adults. In contrast to CREB, we found no differences in pCaMKII expression between prism-wearing and control juveniles within the external nucleus of the inferior colliculus (ICX, the major site of plasticity. For prism-wearing adults that hunted live mice and are capable of adaptation, expression of pCaMKII was increased relative to prism-wearing adults that fed passively on dead mice and are not capable of adaptation. This effect did not bear the hallmarks of instructive information: it was not localized to rostral ICX and did not exhibit a patchy distribution reflecting discrete bimodal stimuli. These data are consistent with a role for CaMKII as a permissive rather than an instructive factor. In addition, the paucity of pCaMKII expression in passively fed adults suggests that the permissive default setting is “off” in adults.

  16. Barn Owl (Tyto alba Diet Composition on Intensively Used Agricultural Land in the Danube Lowland

    Directory of Open Access Journals (Sweden)

    Tomáš Veselovský

    2017-01-01

    Full Text Available Based on pellets analysis from five localities in south western Slovakia (Malá Mužla, Malé Ripňany, Obid, Opatovský Sokolec and Tešedíkovo, we studied the diet composition of Barn Owl (Tyto alba in intensively cultivated agricultural lands. A total of 6218 specimens of prey, 17 mammalian and 7 bird species were identified. The main prey species found in all food samples was the Common Vole (Microtus arvalis, varying between 56 % and 67 %. The proportion of synanthropic species (Rattus norvegicus, Passer domesticus and species inhabiting agricultural landscapes (Crocidura leucodon, Crocidura suaveolens, Mus sp. increases in localities with a lower ratio of the Common Vole. The results suggest land use affects the diet of Barn Owls, confirming conclusions which have been drawn in previous studies. From faunistic point of view, discovering the Pannonian Root Vole (Microtus oeconomus mehelyi in the diet from Malá Mužla was important.

  17. European monitoring for raptors and owls: state of the art and future needs.

    Science.gov (United States)

    Kovács, András; Mammen, Ubbo C C; Wernham, Chris V

    2008-09-01

    Sixty-four percent of the 56 raptor and owl species that occur in Europe have an unfavorable conservation status. As well as requiring conservation measures in their own right, raptors and owls function as useful sentinels of wider environmental "health," because they are widespread top predators, relatively easy to monitor, and sensitive to environmental changes at a range of geographical scales. At a time of global acknowledgment of an increasing speed of biodiversity loss, and new, forward-looking and related European Union biodiversity policy, there is an urgent need to improve coordination at a pan-European scale of national initiatives that seek to monitor raptor populations. Here we describe current initiatives that make a contribution to this aim, particularly the current "MEROS" program, the results of a questionnaire survey on the current state of national raptor monitoring across 22 BirdLife Partners in Europe, the challenges faced by any enhanced pan-European monitoring scheme for raptors, and some suggested pathways for efficiently tapping expertise to contribute to such an initiative.

  18. The conservation status and trends of raptors and owls in Europe.

    Science.gov (United States)

    Burfield, Ian J

    2008-09-01

    To conserve biodiversity efficiently, an international framework is needed to ensure that national priorities take into account regional and global priorities. BirdLife International has published five comprehensive assessments of the global status of the world's birds and two evaluations of the status of Europe's birds at a continental level. This paper analyzes the results of these assessments in relation to Europe's 56 species of raptors and owls, 18% of which are of global conservation concern, and 64% of which have an unfavorable conservation status in Europe. The European Union (EU) holds half of the total estimated European breeding population of raptors and owls, and European Russia supports another third, but every European country has a responsibility for at least two species of European conservation concern. During the 1990s, more raptors increased than decreased in most EU member states, but the opposite was true in eastern Europe, where many of the most threatened species are concentrated. Given the popularity of these species with the public, and the political commitment to halt the loss of biodiversity by 2010, much more action is needed to monitor and conserve birds of prey.

  19. A Numerical Study of Aerodynamic Performance and Noise of a Bionic Airfoil Based on Owl Wing

    Directory of Open Access Journals (Sweden)

    Xiaomin Liu

    2014-08-01

    Full Text Available Noise reduction and efficiency enhancement are the two important directions in the development of the multiblade centrifugal fan. In this study, we attempt to develop a bionic airfoil based on the owl wing and investigate its aerodynamic performance and noise-reduction mechanism at the relatively low Reynolds number. Firstly, according to the geometric characteristics of the owl wing, a bionic airfoil is constructed as the object of study at Reynolds number of 12,300. Secondly, the large eddy simulation (LES with the Smagorinsky model is adopted to numerically simulate the unsteady flow fields around the bionic airfoil and the standard NACA0006 airfoil. And then, the acoustic sources are extracted from the unsteady flow field data, and the Ffowcs Williams-Hawkings (FW-H equation based on Lighthill's acoustic theory is solved to predict the propagation of these acoustic sources. The numerical results show that the lift-to-drag ratio of bionic airfoil is higher than that of the traditional NACA 0006 airfoil because of its deeply concave lower surface geometry. Finally, the sound field of the bionic airfoil is analyzed in detail. The distribution of the A-weighted sound pressure levels, the scaled directivity of the sound, and the distribution of dP/dt on the airfoil surface are provided so that the characteristics of the acoustic sources could be revealed.

  20. Acute toxicity of four anticholinesterase insecticides to American kestrels, eastern screech-owls and northern bobwhites

    Science.gov (United States)

    Wiemeyer, Stanley N.; Sparling, D.W.

    1991-01-01

    American kestrels (Falco sparverius), eastern screech-owls (Otus asio), and northern bobwhites (Colinus virginianus) were given single acute oral doses of four widely diverse anticholinesterase pesticides: EPN, fenthion, carbofuran, and monocrotophos. LD50s, based on birds that died within 5 d of dosage, were computed for each chemical in each species. Sex differences in the sensitivity of northern bobwhites in reproductive condition were examined. American kestrels were highly sensitive to all chemicals tested (LD50s 0.6--4.0 mg/kg). Eastern screech-owls were highly tolerant to EPN (LD50 274 mg/kg) but sensitive to the remaining chemicals (LD50s 1.5-3.9 mg/kg). Northern bobwhites were highly sensitive to monocrotophos (LD50 0.8 mg/kg) and less sensitive to the remaining chemicals (LD50s 4.6--31 mg/kg). Female bobwhites (LD50 3.1 mg/kg) were more sensitive to fenthion than males (LD50 7.0 mg/kg). Mean percent depression of brain cho[inesterase (ChE) of birds that died on the day of dosing exceeded 65% for all chemicals in all species. The response of one species to a given pesticide should not be used to predict the sensitivity of other species to the same pesticide. The need for research on several topics is discussed

  1. Regional and Seasonal Diet of the Western Burrowing Owl in South-Central Nevada

    Energy Technology Data Exchange (ETDEWEB)

    Derek B. Hall, Paul D. Greger, Jeffrey R. Rosier

    2009-04-01

    We examined diets of Western Burrowing Owls (Athene cunicularia hypugaea) based on contents of pellets and large prey remains collected year-round at burrows in each of the 3 regions in south central Nevada (Mojave Desert, Great Basin Desert, and Transition region). The most common prey items, based on percent frequency of occurrence, were crickets and grasshoppers, beetles, rodents, sun spiders, and scorpions. The most common vertebrate prey was kangaroo rats (Dipodomys spp.). True bugs (Hemiptera), scorpions, and western harvest mice (Reithrodontomys megalotis) occurred most frequently in pellets from the Great Basin Desert region. Kangaroo rats (Dipodomys spp.) and pocket mice (Perognathinae) were the most important vertebrate prey items in the Transition and Mojave Desert regions, respectively. Frequency of occurrence of any invertebrate prey was high (>80%) in samples year-round but dropped in winter samples, with scorpions and sun spiders exhibiting the steepest declines. Frequency of occurrence of any vertebrate prey peaked in spring samples, was intermediate for winter and summer samples, and was lowest in fall samples. With the possible exception of selecting for western harvest mice in the Great Basin Desert region, Western Burrowing Owls in our study appeared to be opportunistic foragers with a generalist feeding strategy.

  2. Relative effects of road risk, habitat suitability, and connectivity on wildlife roadkills: the case of tawny owls (Strix aluco).

    Science.gov (United States)

    Santos, Sara M; Lourenço, Rui; Mira, António; Beja, Pedro

    2013-01-01

    Despite its importance for reducing wildlife-vehicle collisions, there is still incomplete understanding of factors responsible for high road mortality. In particular, few empirical studies examined the idea that spatial variation in roadkills is influenced by a complex interplay between road-related factors, and species-specific habitat quality and landscape connectivity. In this study we addressed this issue, using a 7-year dataset of tawny owl (Strix aluco) roadkills recorded along 37 km of road in southern Portugal. We used a multi-species roadkill index as a surrogate of intrinsic road risk, and we used a Maxent distribution model to estimate habitat suitability. Landscape connectivity was estimated from least-cost paths between tawny owl territories, using habitat suitability as a resistance surface. We defined 10 alternative scenarios to compute connectivity, based on variation in potential movement patterns according to territory quality and dispersal distance thresholds. Hierarchical partitioning of a regression model indicated that independent variation in tawny owl roadkills was explained primarily by the roadkill index (70.5%) and, to a much lesser extent, by landscape connectivity (26.2%), while habitat suitability had minor effects (3.3%). Analysis of connectivity scenarios suggested that owl roadkills were primarily related to short range movements (habitat quality and landscape connectivity are globally high for the study species. Nevertheless, the study supported the view that functional connectivity should be incorporated whenever possible in roadkill models, as it may greatly increase their power to predict the location of roadkill hotspots.

  3. A case of leucism in the burrowing owl Athene cunicularia (Aves: Strigiformes with confirmation of species identity using cytogenetic analysis

    Directory of Open Access Journals (Sweden)

    Denise M Nogueira

    2011-02-01

    Full Text Available Leucism is an inherited disorder, characterized by the lack of pigments in part or all of the body, normal coloration of the eyes and, in birds, in naked parts such as the bill and legs. This kind of disorder is sometimes erroneously designated as albinism or partial albinism. In this study, we present a case of leucism in a wild owl. The studied individual presented completely white plumage, light-yellow coloration of legs and bill and normal coloration of eyes. According to morphological features, this owl is a specimen of burrowing owl, Athene cunicularia (Molina, 1782. To confirm the species identity, we used cytogenetic analyses for karyotypic determination, comparing it to the previously described one in the literature. We also studied a captive female of A. cunicularia to complement the species karyotype, which was described in the literature based only on a single male. The karyotype of the leucistic owl individual was compatible with the previously published one for A. cunicularia, confirming the bird was a male specimen. Cytogenetic analysis of the captive female showed that the W sex chromosome is metacentric and comparable to the seventh pair in size. This is the first description of a case of leucism in A. cunicularia for South America. Long-term studies are needed in the Neotropical region to evaluate survival and breeding success in leucistic birds.

  4. Microsatellite analysis detects low rate of extra-pair paternity in Tengmalm’s owl, Aegolius funereus

    Czech Academy of Sciences Publication Activity Database

    Horníček, J.; Menclová, P.; Popelková, A.; Rymešová, D.; Zárybnická, M.; Bryja, Josef; Svobodová, J.

    2017-01-01

    Roč. 66, č. 1 (2017), s. 22-28 ISSN 0139-7893 Institutional support: RVO:68081766 Keywords : boreal owl * mating system * microsatellites * population density Subject RIV: EG - Zoology OBOR OECD: Zoology Impact factor: 0.739, year: 2016

  5. POPULATION ECOLOGY AND CONSERVATION OF THE BARN OWL TYTO-ALBA IN FARMLAND HABITATS IN LIEMERS AND ACHTERHOEK (THE NETHERLANDS)

    NARCIS (Netherlands)

    DEBRUIJN, O

    1994-01-01

    Over the last decades, the Barn Owl population has markedly decreased in range and breeding numbers in The Netherlands as in most western European countries. For effective conservation and population management, it is essential to know which factors are responsible for this decline. The present

  6. Muscular Arrangement and Muscle Attachment Sites in the Cervical Region of the American Barn Owl (Tyto furcata pratincola.

    Directory of Open Access Journals (Sweden)

    Mark L L M Boumans

    Full Text Available Owls have the largest head rotation capability amongst vertebrates. Anatomical knowledge of the cervical region is needed to understand the mechanics of these extreme head movements. While data on the morphology of the cervical vertebrae of the barn owl have been provided, this study is aimed to provide an extensive description of the muscle arrangement and the attachment sites of the muscles on the owl's head-neck region. The major cervical muscles were identified by gross dissection of cadavers of the American barn owl (Tyto furcata pratincola, and their origin, courses, and insertion were traced. In the head-neck region nine superficial larger cervical muscles of the craniocervical, dorsal and ventral subsystems were selected for analysis, and the muscle attachment sites were illustrated in digital models of the skull and cervical vertebrae of the same species as well as visualised in a two-dimensional sketch. In addition, fibre orientation and lengths of the muscles and the nature (fleshy or tendinous of the attachment sites were determined. Myological data from this study were combined with osteological data of the same species. This improved the anatomical description of the cervical region of this species. The myological description provided in this study is to our best knowledge the most detailed documentation of the cervical muscles in a strigiform species presented so far. Our results show useful information for researchers in the field of functional anatomy, biomechanical modelling and for evolutionary and comparative studies.

  7. Distributional changes in the western Burrowing Owl (Athene cunicularia hypugaea) in North America from 1967 to 2008

    Science.gov (United States)

    Macias-Duarte, Alberto; Conway, Courtney J.

    2015-01-01

    The quantification of shifts in bird distributions in response to climate change provides an opportunity to gain a deeper understanding of the processes that influence species persistence. We used data from the North American Breeding Bird Survey (BBS) to document changes in the distributional limits of the western Burrowing Owl (Athene cunicularia hypugaea) from 1967 to 2008. We used logistic regression to model presence probability (p) as a function of longitude, latitude, and year. We modeled a linear trend in logit(p) through time with slope and intercept modeled as a double Fourier series of longitude and latitude. We found that the western Burrowing Owl has experienced an intriguing southward shift in the northern half of its breeding range, contrary to what is predicted by most species niche models and what has been observed for many other species in North America. The breeding range of the Burrowing Owl has been shrinking near its northern, western, and eastern edges. Our model detected the population declines that were observed in California and eastern Washington, in locations where maps based on route-specific estimating equations had predicted significant population increases. We suggest that the northern boundary of the breeding distribution of the western Burrowing Owl has contracted southward and the southern boundary of the species' breeding distribution has expanded southward into areas of northern Mexico that were formerly used only by wintering migrants.

  8. Nest observations of the long-eared owl (Asio otus) in Benton County, Oregon, with notes on their food habits

    Science.gov (United States)

    Richard T. Reynolds

    1970-01-01

    A nesting pair of long-eared owls was found 10 miles north of Corvallis, Benton County, Oregon, on 24 April, 1969. The pair was observed and photographed until 30 May, when the young left the nest. This is the third record of nesting Asio otus west of the Oregon Cascades. Gabrielson and Jewett (1940) reported that Pope collected eggs from a nest...

  9. Spatial ecology and habitat selection of Little Owl Athene noctua during the breeding season in Central European farmland

    Czech Academy of Sciences Publication Activity Database

    Šálek, Martin; Lövy, M.

    2012-01-01

    Roč. 22, č. 3 (2012), s. 328-338 ISSN 0959-2709 Institutional support: RVO:68081766 Keywords : Little Owl * home range size * habitat use * compositional analysis * grasslands * short-sward vegetation Subject RIV: EG - Zoology Impact factor: 1.074, year: 2012

  10. Organohalogen exposure in a Eurasian owl (Bubo bubo) population from Southeastern Spain: Temporal-spatial trends and risk assessment

    NARCIS (Netherlands)

    Gomez-Ramirez, P.; Martinez-Lopez, E.; Garcia-Fernandez, A.; Zweers, A.J.; Brink, van den N.W.

    2012-01-01

    Polybrominated diphenyl ethers (PBDEs), polychlorinated biphenyls (PCBs) and organochlorine insecticides (OCs) were analysed in 58 Eurasian Eagle owl (Bubo bubo) unhatched eggs collected between 2004 and 2009 in Southeastern Spain. Levels of p,p'-DDE were found to be higher than in eggs laid by

  11. Contaminant exposure in relation to spatio-temporal variation in diet composition: A case study of the little owl (

    NARCIS (Netherlands)

    Schipper, A.M.; Wijnhoven, S.; Baveco, H.; van den Brink, N.W.

    2012-01-01

    We assessed dietary exposure of the little owl Athene noctua to trace metal contamination in a Dutch Rhine River floodplain area. Diet composition was calculated per month for three habitat types, based on the population densities of six prey types (earthworms, ground beetles and four small mammal

  12. Effects of food provisioning and habitat management on spatial behaviour of Little Owls during the breeding season

    DEFF Research Database (Denmark)

    Jacobsen, Lars Bo; Chrenkova, Monika; Sunde, Peter

    2016-01-01

    The population of Little Owls in Denmark is close to extinction. The main cause is food limitation during the breeding season. Efforts to improve breeding success include providing breeding pairs with supplementary food and attempts to improve foraging habitats by creating short grass areas near ...... reproductive output in an endangered raptor, but also to decreased working effort, which in turn may improve adult survival....

  13. Dark-bellied brent geese Branta b. bernicla breeding near snowy owl Nyctea scandiaca nests lay more and larger eggs

    NARCIS (Netherlands)

    Kleef, H.H. van; Willems, F.; Volkov, A.E.; Smeets, J.H.R.; Nowak, D.; Nowak, A.

    2007-01-01

    Several studies have demonstrated that snowy owls Nyctea scandiaca defend an area around their nests against predators, hereby inadvertently creating safe havens for breeding dark-bellied brent geese Branta b. bernicla. However, studies investigating brent goose breeding ecology within the

  14. Owl-inspired leading-edge serrations play a crucial role in aerodynamic force production and sound suppression.

    Science.gov (United States)

    Rao, Chen; Ikeda, Teruaki; Nakata, Toshiyuki; Liu, Hao

    2017-07-04

    Owls are widely known for silent flight, achieving remarkably low noise gliding and flapping flights owing to their unique wing morphologies, which are normally characterized by leading-edge serrations, trailing-edge fringes and velvet-like surfaces. How these morphological features affect aerodynamic force production and sound suppression or noise reduction, however, is still not well known. Here we address an integrated study of owl-inspired single feather wing models with and without leading-edge serrations by combining large-eddy simulations (LES) with particle-image velocimetry (PIV) and force measurements in a low-speed wind tunnel. With velocity and pressure spectra analysis, we demonstrate that leading-edge serrations can passively control the laminar-turbulent transition over the upper wing surface, i.e. the suction surface at all angles of attack (0°    15° where owl wings often reach in flight. Our results indicate that the owl-inspired leading-edge serrations may be a useful device for aero-acoustic control in biomimetic rotor designs for wind turbines, aircrafts, multi-rotor drones as well as other fluid machinery.

  15. Energy is not Coffee. An assessment of blind spots on energy spot-markets

    International Nuclear Information System (INIS)

    Jepma, C.J.; Spijker, E.; Van der Gaast, W.; De Jong, F.; Overmars, P.

    2006-01-01

    This study was to be the first in a series of studies on the title subject. It specifically focuses on the differences and similarities with a number of other spot-markets and aims to frame the energy spot markets and their potential development into a broader perspective. Main conclusion is that energy spot-markets differ from several other physical and non-physical spot-markets in many ways. This implies that 'perfect' energy spot-markets may inherently be (much) less perfect than other spot-markets that have approximated the stage of theoretical perfection

  16. Solar 'hot spots' are still hot

    Science.gov (United States)

    Bai, Taeil

    1990-01-01

    Longitude distributions of solar flares are not random but show evidence for active zones (or hot spots) where flares are concentrated. According to a previous study, two hot spots in the northern hemisphere, which rotate with a synodic period of about 26.72 days, produced the majority of major flares, during solar cycles 20 and 21. The more prominent of these two hot spots is found to be still active during the rising part of cycle 22, producing the majority of northern hemisphere major flares. The synodic rotation period of this hot spot is 26.727 + or - 0.007 days. There is also evidence for hot spots in the southern hemisphere. Two hot spots separated by 180 deg are found to rotate with a period of 29.407 days, with one of them having persisted in the same locations during cycles 19-22 and the other, during cycles 20-22.

  17. Variable-spot ion beam figuring

    International Nuclear Information System (INIS)

    Wu, Lixiang; Qiu, Keqiang; Fu, Shaojun

    2016-01-01

    This paper introduces a new scheme of ion beam figuring (IBF), or rather variable-spot IBF, which is conducted at a constant scanning velocity with variable-spot ion beam collimated by a variable diaphragm. It aims at improving the reachability and adaptation of the figuring process within the limits of machine dynamics by varying the ion beam spot size instead of the scanning velocity. In contrast to the dwell time algorithm in the conventional IBF, the variable-spot IBF adopts a new algorithm, which consists of the scan path programming and the trajectory optimization using pattern search. In this algorithm, instead of the dwell time, a new concept, integral etching time, is proposed to interpret the process of variable-spot IBF. We conducted simulations to verify its feasibility and practicality. The simulation results indicate the variable-spot IBF is a promising alternative to the conventional approach.

  18. Solar hot spots are still hot

    International Nuclear Information System (INIS)

    Bai, T.

    1990-01-01

    Longitude distributions of solar flares are not random but show evidence for active zones (or hot spots) where flares are concentrated. According to a previous study, two hot spots in the northern hemisphere, which rotate with a synodic period of about 26.72 days, produced the majority of major flares, during solar cycles 20 and 21. The more prominent of these two hot spots is found to be still active during the rising part of cycle 22, producing the majority of northern hemisphere major flares. The synodic rotation period of this hot spot is 26.727 + or - 0.007 days. There is also evidence for hot spots in the southern hemisphere. Two hot spots separated by 180 deg are found to rotate with a period of 29.407 days, with one of them having persisted in the same locations during cycles 19-22 and the other, during cycles 20-22. 14 refs

  19. Subspecies identification of Chimpanzees Pan troglodytes (Primates: Hominidae from the National Zoo of the Metropolitan Park of Santiago, Chile, using mitochondrial DNA sequences

    Directory of Open Access Journals (Sweden)

    J.A. Vega

    2014-05-01

    Full Text Available Natural populations of Chimpanzees Pan troglodytes are declining because of hunting and illegal live animal trafficking. Four subspecies of Chimpanzee have been reported: Pan troglodytes troglodytes, P.t. schweinfurthii, P.t. verus and P.t. ellioti, which have remained geographically separated by natural barriers such as the rivers Niger, Sanaga and Ubangi in central Africa. Sequence analysis of mitochondrial DNA (mtDNA has been used for the determination of these subspecies, which indirectly can also suggest their geographic origin. It was decided to identify the subspecies and the geographic origin of three captive chimpanzees of the National Zoo of the Metropolitan Park of Santiago (Chile, by analyzing their mitochondrial DNA. DNA was extracted from the saliva of three adult chimpanzees (two males and one female. After the analysis of sequences of the mitochondrial hypervariable region (HVI, a phylogenetic tree was constructed using mitochondrial sequences of known Pan troglodytes subspecies. Molecular phylogeny analysis revealed that the chimpanzees are likely to belong to three different subspecies: P.t. schweinfurthii, P.t. verus and P.t. troglodytes. Identification of subspecies of the three chimpanzees of the National Zoo of the Metropolitan Park of Santiago (Chile was possible due to mtDNA analysis. Future identification of chimpanzees will allow the development of a studbook for the chimpanzee subspecies in other Latin American zoos.

  20. Spot and Runway Departure Advisor

    Science.gov (United States)

    Jung, Yoon Chul

    2013-01-01

    The Spot and Runway Departure Advisor (SARDA) is a research prototype of a decision support tool for ATC tower controllers to assist in manging and controlling traffic on the surface of an airport. SARDA employs a scheduler to generate an optimal runway schedule and gate push-back - spot release sequence and schedule that improves efficiency of surface operations. The advisories for ATC tower controllers are displayed on an Electronic Flight Strip (EFS) system. The human-in-the-loop simulation of the SARDA tool was conducted for east operations of Dallas-Ft. Worth International Airport (DFW) to evaluate performance of the SARDA tool and human factors, such as situational awareness and workload. The results indicates noticeable taxi delay reduction and fuel savings by using the SARDA tool. Reduction in controller workload were also observed throughout the scenario runs. The future plan includes modeling and simulation of the ramp operations of the Charlotte International Airport, and develop a decision support tool for the ramp controllers.