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Sample records for species oligochaeta enchytraeidae

  1. Outdoor surviving experiment with three green house enchytraeid species (Oligochaeta: Enchytraeidae

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    Boros, G.

    2011-10-01

    Full Text Available Some enchytraeid species of tropical, subtropical or Mediterranean origin can appear in artificial environments,e.g. green houses due to the worldwide commercial network. Since the used soil from green houses is often disposed outdoors, aquestion raised that these exotic enchytraeid species could survive under continental climate conditions. In this experiment two ofthe resettled green house species survived outdoors the winter frost and the arid summer season in Hungary.

  2. Enchytraeidae (Oligochaeta) in a changing climate

    DEFF Research Database (Denmark)

    Maraldo, Kristine

    The background for this thesis was to investigate the effect of climate change (increased CO2, temperature and prolonged drought) on field communities of enchytraeids dominated by the species Cognettia sphagnetorum. In the short-term, enchytraeids appear to be unaffected by the climate change when...

  3. A new genus Globulidrilus and three new enchytraeid species (Oligochaeta: Enchytraeidae) from Seoraksan National Park (Korea)

    DEFF Research Database (Denmark)

    Christensen, Bent; Dózsa-Farkas, Klára

    2012-01-01

    From the Seoraksan National Park, Korea, a new enchytraeid genus, Globulidrilus gen. nov., is defined and three new species, Globulidrilus helgei sp. nov., Fridericia seoraksani sp. nov. and Mesenchytraeus longiductus sp. nov., are described. Globulidrilus also includes Marionina riparia Bretsche......, 1899 augm. Cernosvitov 1928, a globally distributed species with a complicated taxonomic history. Pending a revision of Marionina riparia sensu latu (auct.), we retain the species name riparia for a variant of common occurrence in Europe....

  4. How to deal with cryptic species in Enchytraeidae, with recommendations on taxonomical descriptions

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    Schmelz, R. M.

    2017-11-01

    Full Text Available During the 12th International Symposium on Enchytraeidae, held in Tihany, Hungary (27–29 June 2016, the participants discussed cryptic species, i.e., species that are morphologically so similar that they are classified as the same species (Bickford et al. 2007, and how to deal with them taxonomically. Here we summarise the discussion together with a few additional comments, and we give recommendations for species descriptions in Enchytraeidae.

  5. Enchytraeids (Oligochaeta, Enchytraeidae from potting compost purchasable in the Hungarian retail trade

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    Boros, G.

    2010-10-01

    Full Text Available The high humus and organic material content of potting compost is favourable for detritivores such as enchytraeidworms. An investigation was carried out to clarify which enchytraeid species can be found in this medium. A really lowabundance and number of species were found and all of them were well known cosmopolitan species. Consequently, the use ofthese composts probably cannot cause the increase or invasion of new species, in spite of the worm’s special breeding strategies.

  6. Molecular phylogeny of Enchytraeidae (Oligochaeta) indicates separate invasions of the terrestrial environment

    DEFF Research Database (Denmark)

    Christensen, Bent; Glenner, Henrik

    2010-01-01

    segregations of the two genera Enchytraeus and Lumbricillus leaving the remaining genera included in this study as a later segregated major monophyletic branch. Extant members of the two former genera dominate in decaying seaweed in the littoral zone along the sea although members of in particular the genus....... Inland soils probably had to await the emergence of land plants in order to provide a similar food resource and here the major branch of enchytraeid genera diversified into a high number of species in the numerous decomposer networks of this varied environment. A subdivision into the genera Enchytraeus...... and Lumbricillus on the one hand and a branch of mainly inland genera on the other is supported by differences in two somewhat neglected morphological features. Firstly, in Enchytraeus and Lumbricillus the testes are enclosed in a testis sac within which the male cells mature, by one possible exception a unique...

  7. Global checklist of species of Grania (Clitellata: Enchytraeidae with remarks on their geographic distribution

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    Alessandro Prantoni

    2017-12-01

    Full Text Available A checklist of all currently accepted species of Grania Southern, 1913 (Annelida, Clitellata, Enchytraeidae is presented. The genus is widespread over the world and comprises 81 species described to date. Remarks on their geographical distribution, habitat, synonymies and museum catalogue numbers are provided.

  8. (OLIGOCHAETA) FROM SOUTH AFRICAN RIVERS Two species

    African Journals Online (AJOL)

    portion and may be regarded as a chamber of the ampulla, though its walls may be con- voluted. The duct ..... fall within known variation for the species: dimensions, number of segments, form of the ...... 01igochaeta in Das Tierrich, 10, Berlin.

  9. Risk assessment of linear alkylbenzene sulphonates, LAS, in agricultural soil revisited: Robust chronic toxicity tests for Folsomia candida (Collembola), Aporrectodea caliginosa (Oligochaeta) and Enchytraeus crypticus (Enchytraeidae)

    DEFF Research Database (Denmark)

    Krogh, P. H.; Lopez, C. V.; Cassani, G.

    2007-01-01

    To obtain robust data on the toxicity of LAS, tests with the collembolan Folsomia candida L., the oligochaetes Aporrectodea caliginosa Savigny (earthworm) and Enchytraeus crypticus Westheide and Graefe (enchytraeid) were performed in a sandy loam soil. Additionally limited tests with LAS spiked...... to sewage sludge, and subsequently mixed into soil, were performed. For the endpoint of interest, reproduction in soil, we found an EC10 of 205 mg LAS kg-1 soil [8.6-401] [95% confidence limits] for F. candida and an EC10 of 46 mg LAS kg-1 soil [13-80] for A. caliginosa after 28 days. E. crypticus...... was not affected by concentrations up to 120 mg LAS kg-1 soil. When adding (low contaminated) non-spiked sludge to soil, high stimulation of reproduction was ob-served for E. crypticus and A. caliginosa but not for F. candida. We argue that this difference in stimulative response between the tested species...

  10. A new Cernosvitoviella species (Clitellata: Enchytraeidae) and its comparison with other Cernosvitoviella species from Sphagnum mires in Hungary.

    Science.gov (United States)

    Dózsa-Farkas, Klára; Csitári, Bianka; Felföldi, Tamás

    2017-04-18

    Results of a comparative investigation on five Cernosvitoviella species from Hungarian Sphagnum mires including their distribution and the description of a new species, Cernosvitoviella farkasi sp. n., are presented in this paper. Cernosvitoviella atrata, C. aggtelekiensis, C. crassoductus and C. farkasi sp. n. could be easily distinguished from each other based on both morphological and molecular taxonomic analyses. However, C. minor seems to be a species complex on the basis of these investigations, so it was referred as C. minor sensu lato. The status of the C. minor variants requires further studies.

  11. Oligochaeta (Annelida, Clitellata in lotic environments in the state of São Paulo, Brazil Oligochaeta (Annelida, Clitellata em ambientes lóticos do estado de São Paulo, Brasil

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    Roberto da Gama Alves

    Full Text Available Despite the importance of Oligochaeta to the dynamics of aquatic ecosystems and to studies of the biology of pollution, there is currently a dearth of information on this group's ecology in Brazil. The aim of this study was to describe the Oligochaeta fauna in four watercourses - three urban and one rural - in the state of São Paulo: the Pinheirinho stream, the Água Branca stream, the Monjolinho River and the Gouveia stream, respectively. Sediment samples were taken with a Van Veen grab in two areas from each watercourse, during the summer and winter of 2001. In all collection areas, measurements of the pH, electrical conductivity, dissolved oxygen and turbidity of the water were made with a Horiba U-10 device. Principal component analysis showed that axes 1 and 2 explained 68.18% of the results' variability, with the first axis predominantly associated with the granulometric data and the second one with the limnological data. Cluster analysis indicated that area II of the Monjolinho River differed from the other collection sites. In the present study, the Oligochaeta group was represented by Tubificidae, Naididae, Alluroididae, Narapidae and Enchytraeidae. Among the three species of Tubificidae, Limnodrilus hoffmeisteri Claparede, 1862, was the most abundant and most frequent species. The results provided important information on the ecology and distribution of limnic Oligochaeta.Apesar da importância dos Oligochaeta para a dinâmica dos ecossistemas aquáticos e para os estudos sobre a biologia da poluição, existe atualmente, no Brasil, uma carência de informação sobre a ecologia desse grupo. O objetivo do estudo foi caracterizar a fauna de Oligochaeta em três córregos urbanos e um córrego rural, localizados na região central do Estado de São Paulo, sendo estes o córrego do Pinheirinho, Água Branca, rio Monjolinho e o córrego do Gouveia, respectivamente. Amostras do sedimento foram obtidas com um pegador Van Veen em duas

  12. Earthworms from Matsu, Taiwan with descriptions of new species of the genera Amynthas (Oligochaeta: Megascolecidae) and Drawida (Oligochaeta: Moniligastridae).

    Science.gov (United States)

    Shen, Huei-Ping; Chang, Chih-Han; Chih, Wen-Jay

    2015-06-18

    In 2012, we conducted earthworm surveys in Matsu Islands, and described five new species of the genera Amynthas and Metaphire and reported two new records, Desmogaster sinensis Gates, 1930 and Ocnerodrilus occidentalis Eisen, 1878. This paper describes three new species, one of them with two new subspecies, Amynthas nanganensis nanganensis sp. nov. et ssp. nov. and Amynthas nanganensis beiganensis ssp. nov., Drawida beiganica sp. nov. and Drawida dongyinica sp. nov., provides a new record of Drawida koreana Kobayashi, 1938 from the remaining specimens collected in the surveys, reports DNA barcodes (the 5' end sequences of the mitochondrial cytochrome c oxidase subunit 1 gene) from type specimens and further reference specimens of the new species, and lists a total of 27 earthworm species and subspecies found from Matsu Islands. Pheretimoid earthworms made up 66.7% of the total number of the species, with Metaphire matsuensis Shen, 2014 and Metaphire californica (Kinberg, 1867) the most dominant. Our findings indicate that the earthworm fauna of Matsu Islands is more closely related to that of warm temperate China than to Taiwan or tropical southern China.

  13. A new Fridericia species (Clitellata, Enchytraeidae and the enchytraeid fauna of the Őrség National Park (Hungary

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    Dózsa-Farkas, K.

    2016-04-01

    Full Text Available The enchytraeid fauna of the Őrség National Park (Western Hungary, hitherto unknown, was investigated in this study. 14 enchytraeid genera including 47 species and one other annelid worm (Hrabeiella periglandulata were identified. One enchytraeid species was found to be new to science and is described in this paper as Fridericia zicsii sp. nov. The new species is distinguishable based on both morphological characters and molecular data (mitochondrial cytochrome c oxidase subunit I, nuclear histone 3 genes and nuclear ribosomal ITS region sequences from similar species. The enchytraeid fauna of Őrség NP indicated well the subalpine nature of this area. The most species-rich site was the hay meadow (32 species and interestingly, the species number in the Sphagnum bog of Szőce was unusually high (19 species.

  14. The influence of taxonomic resolution of Oligochaeta on the evaluation of water quality in an urban stream in Minas Gerais, Brazil A influência da resolução taxonômica de Oligochaeta na avaliação da qualidade da água em um córrego urbano em Minas Gerais, Brasil

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    Gabriela Linhares Frizzera

    2012-12-01

    Full Text Available OBJECTIVE: The objective of this study was to verify the identification of specimens of the Oligochaeta in different taxonomic levels (family and species has the same potential for assessing the water quality of an urban stream in Minas Gerais, Brazil. METHODS: Oligochaeta specimens were collected from eight sampling stations in July 2007. Four stations were located in rural areas and the other four in urban areas. Were measured concentrations of dissolved oxygen, phosphorus and total nitrogen, pH, electrical conductivity and BOD. To evaluate the influence of taxonomic level, Oligochaeta specimens were identified at the family and species. We performed a principal component analysis (PCA to determine which abiotic variables best explained the distribution of Oligochaeta along the sampling stations. Cluster analysis was performed with the abundance of Oligochaeta in the family and species levels, separately, to assess the degree of similarity between the stations and check the level of identification of organisms could interfere with the associations formed. RESULTS: In general, the sampling stations located in urban areas had high pH, BOD and total nitrogen and phosphorus, while rural stations had a higher concentration of oxygen. Three families of Oligochaeta were found: Tubificidae, Naididae and Enchytraeidae. Tubificidae and Limnodrilus hoffmeisteri were the family and the species with the highest density, respectively, especially at those stations located in urban areas. Both the PCA analysis and cluster analysis showed that the sampling stations in urban areas and rural areas have different characteristics that separate CONCLUSIONS: The studied environment presents two distinct regions: the urban region with a high degree of organic pollution and high density Tubificidae and L. hoffmeisteri, and rural, with less human influence and low density of organisms Oligochaeta. These features made the use of the taxonomic level of family allow a

  15. Different levels of taxonomic resolution in bioassessment: a case study of oligochaeta in lowland streams

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    Agustina Cortelezzi

    2011-12-01

    Full Text Available AIM: This study evaluated the use of oligochaetes at different levels of taxonomic resolution as environmental indicators in Argentine lowland streams affected by different land uses. METHODS: Sampling sites were grouped based on the physicochemical and habitat characteristics (low-, moderate-, and high-impact disturbance. Collection of the oligochaetes samples was carried out seasonally in sediment and vegetation habitats. RESULTS: The increases in nutrients and organic matter produced elevated densities of the Oligochaeta, but when the disturbance also involved changes in the physical habitat or enhancements in toxic substances, the abundance decreased significantly to values even lower than those of non-impacted environments. The responses of Naidinae and Tubificinae were similar. The density of the Pristininae decreased with increasing impact, but those of the Enchytraeidae and Rhyacodrilinae increased at the most highly impacted sites. The Opistocystidae were not recorded in high-impact sites. Species richness and diversity (H' were lower in high-impact sites and even lower in sediments. Some species presented no restrictions in the habitat type or with the contamination level: Limnodrilus hoffmeisteri, Dero furcatus, D. digitata, D. pectinata, Pristina longiseta, and P. aequiseta. Moreover, Trieminentia corderoi, Slavina appendiculata, and Aulodrilus pigueti exhibited the highest abundances at low-impact sites and were not registered in high-impact sites. CONCLUSIONS: The Oligochaeta show a relatively wide ecological valence through their extensive number of species. Although lower taxonomic levels can give information about environmental status, test-species' sensitivities to different types and degrees of contamination will be of utmost relevance to the evaluation of ecological quality.

  16. New earthworm species of the genus Amynthas Kinberg, 1867 from Thailand (Clitellata, Oligochaeta, Megascolecidae)

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    Bantaowong, Ueangfa; Chanabun, Ratmanee; Tongkerd, Piyoros; Sutcharit, Chirasak; James, Samuel W.; Panha, Somsak

    2011-01-01

    Abstract Four new species of terrestrial earthworms from the zebrus-group in the genus Amynthas Kinberg, 1867, are described from Nan province, north Thailand: Amynthas phatubensis sp. n., from Tham Pha Tub Arboretum, Amynthas tontong sp. n., from Tontong Waterfall, Amynthas borealis sp. n., from Chaloemprakiat district, and Amynthas srinan sp. n., from Srinan National Park.After comparing with the two closely related Laos species Amynthas chandyi Hong, 2008 and Amynthas namphouinensis Hong, 2008, the four new species show clear morphological differences, and also it is confirmed that there are no previous records of the species described here. Amynthas phatubensis sp. n. is the largest (longest) sized of these earthworms and is the only species that lives in limestone habitats. The genital characters are different among them and also from the two Laotian species. Molecular systematics would be a good method for further analysis of the diversity and species boundaries in SE Asian Amynthas. PMID:21594106

  17. New species of Andiorrhinus Cognetti, 1908 (Oligochaeta: Rhinodrilidae) from Venezuela and Brazil.

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    Feijoo, Alexander M; Brown, George G; James, Samuel W

    2017-12-08

    Findings pertinent to 11 earthworm species from Venezuela and Brazil are reported. Six of these species are described as new to science, one is re-described and relocated in the genus Andiorrhinus, and new sites of occurrence are reported for four other species. Eight species of oligochaetes were found in the Andes in the state of Mérida, Venezuela: Andiorrhinus (Turedrilus) duranti sp. nov., Andiorrhinus (Meridrilus) timotocuica sp. nov., Andiorrhinus (Meridrilus) torondoy sp. nov., Andiorrhinus (Meridrilus) sp. 1, Andiorrhinus (Quibario) tatuy sp. nov., Andiorrhinus (Meridrilus) kuika (Righi, 1993), Andiorrhinus (Meridrilus) mukuci (Righi, 1993), and Andiorrhinus (Meridrilus) rimeda (Righi & Araujo, 2000). Andiorrhinus (Meridrilus) sp. 1, represented by one specimen only, is possibly a new species. Three other species were collected in Brazil: Andiorrhinus (Amazonidrilus) karinae sp. nov. in the Cerrado bioregion of Mato Grosso state; Andiorrhinus (Amazonidrilus) rodriguezi sp. nov. in the Amazon region in compost, and Andiorrhinus (Amazonidrilus) duseni (Michaelsen, 1918) in the Atlantic Forest, in the states of São Paulo and Paraná, the last species characterized by broad geographical and land use occurrences. The new subgenus Quibario was distinguished by the presence of three pairs of hearts in segments 10, 11, and 12. Keys are also included to differentiate species of subgenera Amazonidrilus and Meridrilus. The implications of these results in the context of ecological interactions, and dispersion of Andiorrhinus species in South America are discussed.

  18. Effects of Organic Pesticides on Enchytraeids (Oligochaeta in Agroecosystems: Laboratory and Higher-Tier Tests

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    Jörg Römbke

    2017-05-01

    Full Text Available Enchytraeidae (Oligochaeta, Annelida are often considered to be typical forestliving organisms, but they are regularly found in agroecosystems of the temperate regions of the world. Although less known than their larger relatives, the earthworms, these saprophagous organisms play similar roles in agricultural soils (but at a smaller scale, e.g., influencing soil structure and organic matter dynamics via microbial communities, and having a central place in soil food webs. Their diversity is rarely studied or often underestimated due to difficulties in distinguishing the species. New genetic techniques reveal that even in anthropogenically highly influenced soils, more than 10 species per site can be found. Because of their close contact with the soil pore water, a high ingestion rate and a thin cuticle, they often react very sensitively to a broad range of pesticides. Firstly we provide a short overview of the diversity and abundance of enchytraeid communities in agroecosystems. Afterwards, we explore the available data on enchytraeid sensitivity toward pesticides at different levels of biological organization, focusing on pesticides used in (mainly European agroecosystems. Starting with non-standardized studies on the effects of pesticides on the sub-individual level, we compile the results of standard laboratory tests performed following OECD and ISO guidelines as well as those of higher-tier studies (i.e., semi-field and field tests. The number of comparable test data is still limited, because tests with enchytraeids are not a regulatory requirement in the European Union. While focusing on the effects of pesticides, attention is also given to their interactions with environmental stressors (e.g., climate change. In conclusion, we recommend to increase the use of enchytraeids in pesticide risk assessment because of their diversity and functional importance as well as their increasingly simplified use in (mostly standardized tests at all levels

  19. Charles Darwin's Observations on the Behaviour of Earthworms and the Evolutionary History of a Giant Endemic Species from Germany, Lumbricus badensis (Oligochaeta: Lumbricidae)

    International Nuclear Information System (INIS)

    Kutschera, U.; Elliott, M.

    2010-01-01

    The British naturalist Charles Darwin (1809/1882) began and ended his almost 45-year-long career with observations, experiments, and theories related to earthworms. About six months before his death, Darwin published his book on The Formation of Vegetable Mould, through the Actions of Worms, With Observations on their Habits (1881). Here we describe the origin, content, and impact of Darwin's last publication on earthworms (subclass Oligochaeta, family Lumbricidae) and the role of these annelids as global ecosystem re workers (concept of bioturbation). In addition, we summarize our current knowledge on the reproductive behaviour of the common European species Lumbricus terrestris. In the second part of our account we describe the biology and evolution of the giant endemic species L. badensis from south western Germany with reference to the principle of niche construction. Bio geographic studies have shown that the last common ancestor of L. badensis, and the much smaller sister-taxon, the Atlantic-Mediterranean L. friendi, lived less than 10000 years ago. Allopatric speciation occurred via geographically isolated founder populations that were separated by the river Rhine so that today two earthworm species exist in different areas.

  20. Charles Darwin's Observations on the Behaviour of Earthworms and the Evolutionary History of a Giant Endemic Species from Germany, Lumbricus badensis (Oligochaeta: Lumbricidae

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    U. Kutschera

    2010-01-01

    Full Text Available The British naturalist Charles Darwin (1809–1882 began and ended his almost 45-year-long career with observations, experiments, and theories related to earthworms. About six months before his death, Darwin published his book on The Formation of Vegetable Mould, through the Actions of Worms, With Observations on their Habits (1881. Here we describe the origin, content, and impact of Darwin's last publication on earthworms (subclass Oligochaeta, family Lumbricidae and the role of these annelids as global “ecosystem reworkers” (concept of bioturbation. In addition, we summarize our current knowledge on the reproductive behaviour of the common European species Lumbricus terrestris. In the second part of our account we describe the biology and evolution of the giant endemic species L. badensis from south western Germany with reference to the principle of niche construction. Biogeographic studies have shown that the last common ancestor of L. badensis, and the much smaller sister-taxon, the Atlantic-Mediterranean L. friendi, lived less than 10 000 years ago. Allopatric speciation occurred via geographically isolated founder populations that were separated by the river Rhine so that today two earthworm species exist in different areas.

  1. The Earthworms (Oligochaeta: Lumbricidae)of Wyoming, USA, Revisited.

    Science.gov (United States)

    This survey of the earthworms from 22 of the 23 counties of Wyoming recorded 13 species of terrestrial Oligochaeta, all members of the family Lumbricidae. One of these species, Aporrectodea limicola, is reported for the first time from the state. Current nomenclature is applied to historical records...

  2. Earthworms of the 'acaecate' Pheretima group in Vietnam (Oligochaeta: Megascolecidae), with description of a new species from the Mekong delta.

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    Nguyen, Tung T; Tran, Binh T T; Nguyen, Anh D

    2014-09-22

    The 'acaecate' Pheretima group from Vietnam is revised, with description of a new species, Polypheretima mekongmontis sp. nov. A total of 18 species of three genera, Metapheretima Michaelsen, 1928, Planapheretima Michaelsen, 1934, and Polypheretima Michaelsen, 1934 has been recorded from Vietnam. Caecate species of Planapheretima are included here as well. Planapheretima arboricola (Rosa, 1890), Pl. lacertina (Chen, 1946), Pl. tenebrica (Chen, 1946), Polypheretima elongata (Perrier, 1872), and Po. taprobanae (Beddard, 1892) are originally recorded from other countries; all remaining species are native to Vietnam. The species Polypheretima tani (Thai, 1996) and Po. tiencanhensis (Pham, 1995) are transferred to the genus Metapheretima. A key to species and distribution maps are also presented.

  3. New species of semi-aquatic freshwater earthworm genus Glyphidrilus Horst, 1889 from Thailand and Laos (Oligochaeta, Almidae

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    Ratmanee Chanabun

    2017-05-01

    Full Text Available Seven new species of semi-aquatic freshwater earthworms belonging to the genus Glyphidrilus Horst, 1889 are described from Thailand and Laos, Glyphidrilus nanensis Chanabun & Panha sp. n., G. satunensis Chanabun & Panha sp. n., G. chiangraiensis Chanabun & Panha sp. n., G. namphao Chanabun & Panha sp. n., G. sekongensis Chanabun & Panha sp. n., G. namdonensis Chanabun & Panha sp. n., and G. champasakensis Chanabun & Panha sp. n. The species are characterized by their external and internal morphological characteristics, as well as body sizes. Other morphological character differences between these seven species were also compared, and an identification key is provided. The relationships of the new species to congeners are discussed.

  4. Groundwater and marine intertidal Tubificidae (Oligochaeta) from the Canary and Cabo Verde Islands, with descriptions of two new species

    NARCIS (Netherlands)

    Erséus, Christer

    1992-01-01

    Seven species of Tubificidae are recorded from the Canary Islands, viz. Heterodrilus amplus n. sp., Coralliodrilus leviatriatus Erséus, 1979, Limnodriloides agnes Hrabĕ, 1967, L. janstocki n. sp., Aktedrilus cuneus Erséus, 1984, A. parvithecatus (Erséus, 1978), and Tubifex tubifex (Müller, 1774);

  5. Analysis of FAME for two species of earthworms Allolobophora caliginosa Savigny and Pheretima hawayana Rosa (Annelida-Oligochaeta)

    OpenAIRE

    Hossam El-Din Mohamed Omar; Zedan Z. Ibraheim; Nasser A. El-Shimy; Rouwaida S. Ali

    2012-01-01

    Analysis of fatty acid (FA) is one of the most commonly used tools for investigating microbial populations in ecological studies. Fatty acids can be extracted and esterified to form fatty acid methyl esters (FAME) when analyzed using gas chromatography–mass spectrometry, the resulting profile contains some microbial biomarkers. The aim of the present study to analysis FAME present in two species of earthworms exhibit the same environment. The thin layer chromatography of earthworm Alloloboph...

  6. Checklist of earthworms (Oligochaeta: Lumbricidae) from Germany.

    Science.gov (United States)

    Lehmitz, Ricarda; Römbke, Jörg; Jänsch, Stephan; Krück, Stefanie; Beylich, Anneke; Graefe, Ulfert

    2014-09-23

    A checklist of the German earthworm fauna (Oligochaeta: Lumbricidae) is presented, including published data, data from reports, diploma- and PhD- theses as well as unpublished data from museum collections, research institutions and private persons. Overall, 16,000 datasets were analyzed to produce the first German checklist of Lumbricidae. The checklist comprises 46 earthworm species from 15 genera and provides ecological information, zoogeographical distribution type and information on the species distribution in Germany. Only one species, Lumbricus badensis Michaelsen, 1907, is endemic to Germany, whereas 41% are peregrine. As there are 14 species occurring exclusively in the southern or eastern part of Germany, the species numbers in German regions increase from north to south.

  7. Analysis of FAME for two species of earthworms Allolobophora caliginosa Savigny and Pheretima hawayana Rosa (Annelida-Oligochaeta

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    Hossam El-Din Mohamed Omar

    2012-01-01

    Full Text Available Analysis of fatty acid (FA is one of the most commonly used tools for investigating microbial populations in ecological studies. Fatty acids can be extracted and esterified to form fatty acid methyl esters (FAME when analyzed using gas chromatography–mass spectrometry, the resulting profile contains some microbial biomarkers. The aim of the present study to analysis FAME present in two species of earthworms exhibit the same environment. The thin layer chromatography of earthworm Allolobophora caliginosa Savigny showed three major spots corresponding to FAME while that of earthworm Pheretima hawayana Rosa showed two major spots. The GC-MS analysis of Allolobophora caliginosa Savigny extract showed the presence of at least 23 peaks, only two peaks were identified from their Rt and Ms spectrum, hexadecanoic acid methyl ester and octadecenoic acid methyl ester. While the chromatogram of Pheretima hawayana Rosa extract showed at least 20 peaks, five of them were identified; butanedioic acid dimethyl ester, pentadecanoic acid 14-methyl ester, 2-hydroxy-hexadecanoic acid methyl ester, 9-octadecenoic acid methyl ester and octadecanoic acid methyl ester. In conclusion, in spite of the two species of earthworms from the same environment, but their content of FAME was different and that may explain why the biological activity of the whole body extract was different.

  8. Darwin’s earthworms (Annelida, Oligochaeta, Megadrilacea with review of cosmopolitan Metaphire peguana–species group from Philippines

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    Blakemore, R.J.

    2016-03-01

    Full Text Available A chance visit to Darwin allowed inspection of and addition to Northern Territory (NT Museum’s earthworm collection. Native Diplotrema zicsii sp. nov. from Alligator River, Kakadu NP is described. Town samples were dominated by cosmopolitan exotic Metaphire bahli (Gates, 1945 herein keyed and compared morpho-molecularly with M. peguana (Rosa, 1890 requiring revision of allied species including Filipino Pheretima philippina (Rosa, 1891, P. p. lipa and P. p. victorias sub-spp. nov. A new P. philippina-group now replaces the dubia-group of Sims & Easton, 1972 and Amynthas carinensis (Rosa, 1890 further replaces their sieboldi-group. Lumbricid Eisenia fetida (Savigny, 1826 and Glossoscolecid Pontoscolex corethrurus (Müller, 1857 are confirmed introductions to the NT. mtDNA barcodes newly include Metaphire houlleti (Perrier, 1872 and Polypheretima elongata (Perrier, 1872 spp.-complexes from the Philippines. Pithemera philippinensis James & Hong, 2004 and Pi. glandis Hong & James, 2011 are new synonyms of Pi. bicincta (Perrier, 1875 that is common in Luzon. Vietnamese homonym Pheretima thaii Nguyen, 2011 (non P. thaii Hong & James, 2011 is replaced with Pheretima baii nom. nov. Two new Filipino taxa are also described: Pleionogaster adya sp. nov. from southern Luzon and Pl. miagao sp. nov. from western Visayas.

  9. Tributaries as richness source for Oligochaeta assemblage (Annelida of Neotropical dammed river

    Directory of Open Access Journals (Sweden)

    FH Ragonha

    Full Text Available Tributaries may serve as richness source for the river main channel and the zoobenthos community is a good tool to verify this kind of pattern. In this study, we aimed to characterize the benthic invertebrate assemblage in three tributaries associated to the Paraná River main channel, focusing in Oligochaeta community. We hypothesized that (i in tributaries, Oligochaeta are richer than the main river (Paraná River and (ii dammed tributary (Paranapanema River is poorly diverse than the others. Samples were conducted in Paranapanema, Baía and Ivinhema tributaries using a modified Petersen grab along three transects (samples conducted inside the tributary, in the mouth of each tributary and inside Paraná River. To analyze (i the difference between the richness and density among the tributaries and the Paraná River and (ii effect of each tributary transect on the Oligochaeta richness we used a nonparametric Kruskal-Wallis test. Changes in environmental variables and in richness and composition of Oligochaeta were summarized by Canonic Correspondence Analysis. It was registered 21 different benthic invertebrates taxa, being Oligochaeta assemblage with the highest density. Within Oligochaeta, Narapa bonettoi was the most abundant species, followed by Haplotaxis aedochaeta and Paranadrilus descolei. In our results we refused both hypotheses, because we did not found significant differences for richness and density between the tributaries and the main river, and also no difference between the three transects of each tributary were found. However, the tributaries less influenced by damming, especially the Baía recorded high richness. This corroborates their importance to diversity in the floodplain and the species of Oligochaeta reflect the peculiar characteristics of habitats within each tributaries.

  10. Earthworms (Oligochaeta: Acanthodrilidae and Lumbricidae) associated with Hornsby Bend Biosolids Management Plant, Travis County, Texas, USA

    Science.gov (United States)

    Earthworm populations were surveyed in soils from a variety of habitats associated with the Hornsby Bend Biosolids Management Plant, Austin, Texas, from November 2009 through March 2010. Seven species of terrestrial Oligochaeta, including one species new to science, are reported from two families, ...

  11. Densidad estacional y distribución vertical de los Enchytraeidae (Annelida: Oligochaeta en diferentes sistemas de producción Seasonal density and vertical distribution of Enchytraeidae (Annelida: Oligochaeta in different production systems

    Directory of Open Access Journals (Sweden)

    Alicia Noemí López

    2005-12-01

    Full Text Available En el sudeste de la provincia de Buenos Aires existe escasa información sobre la actividad de los enquitreidos en diferentes sistemas de producción. Los objetivos de este trabajo fueron determinar: a la importancia relativa de los enquitreidos dentro de la mesofauna; b su densidad estacional en relación con el grado de disturbio de los sistemas y c su distribución vertical. Este trabajo se realizó estacionalmente desde 1998 a 2001 en Balcarce, Argentina (37º 45'S, 58º 18'W, en cuatro lotes experimentales: natural (NAT, ganadero orgánico (GO, ganadero intensivo (GI y agrícola convencional (AC y en un suelo Argiudol Típico (NAT y Hapludol Tapto-Árgico (AC, GI y GO. Dentro de la comunidad mesofaunal, los enquitreidos fueron los más abundantes. GO (78 % y GI (68.5 % tuvieron un porcentaje menor que los sistemas más disturbado, AC (84.9 % y sin disturbios, NAT (93 %. El estudio comparativo de la densidad mostró interacción significativas entre sistemas y estación (p In the Southeastern of Buenos Aires Province little information exists on activity of enchytraeids under different production systems. The aims of this work were to determine: a the relative importance of enchytraeids among the components of the mesofaunal community; b the relationship between seasonal enchytraeids density (PD in different production systems, and c identify of pattern vertical distribution .This work was done seasonally from 1998 to 2001, on four experimental plots: natural (NAT, organic livestock (GO, intensive fertilization livestock (GI and conventional agriculture (AC at Balcarce, Argentina (37º 45'S, 58º 18'W, on soil Typic Argiudol (NAT and a Hapludol Tapto Árgico (AC, GI y GO. Enchytraeids were the most abundant in the mesofaunal community; GO (78% and GI (68,5% to supported a minor average those agroecosystems under intensive cultivation (84,9% and undisturbed soils NAT (93%. The comparative study showed significant interaction between site and season (p< 0.05 in PD. In general, GO, GI and AC average density were highest during autumn-winter than spring-summer (PD values ranged between 2476-10926 ind m-2 to 1922-0 ind m-2 in GO, 3740-2764 ind m-2 to 165-2 ind m-2 in GI and 8596-4022 ind m-2 to 4185-544 ind m-2 in AC. It was found the same in NAT (2000-2001 whereas there was not significant differences in 1999 between winter and summer. Enchytraeids were more superficially distributed (10 cm in natural grassland (NAT and in arable soil (AC than in cultivated pastures GO and GI (10-30 cm.

  12. Eudrilidae: Oligochaeta: Annelida

    African Journals Online (AJOL)

    1995-11-07

    Nov 7, 1995 ... classHied as Nsukkadrilus because it conforms to Sims' (1987) diagnosis of that genus, the new species bears three features which separate it from the only congener and type species, N. mbae. Firstly, it bears externally a pair of papillae in each of segments XVII and XVIII; the male pores open through the ...

  13. Naididae (Annelida, Oligochaeta associated with Pomacea bridgesii (Reeve (Gastropoda, Ampullaridae Naididae (Annelida: Oligochaeta associados a Pomacea bridgesii (Reeve (Gastropoda, Ampullaridae

    Directory of Open Access Journals (Sweden)

    Guilherme R. Gorni

    2006-12-01

    Full Text Available The family Amplullaridae belongs to this class Gastropoda and is made up of freshwater organisms with a wide geographical distribution in tropical regions. Oligochaeta worms can be found in association with snails of this family, inhabiting the umbilicus of their shells. Due to the lack of information on the ecology of these worms, this work focused on investigating which kind of Oligochaeta species associate with the mollusk Pomacea bridgesii (Reeve, 1856. Samples were collected during winter and spring 2003 and summer 2004. From a total of 209 snails collected, the presence of Oligochaeta worms was observed in only 58 of them (27.75%. In these infected snails, 89 Oligochaeta worms were found, all belonging to the family Naididae. The species Haemonais waldvogeli Bretscher, 1900, Dero (Dero nivea Aiyer, 1929 and Dero (Dero sawayai Marcus, 1943 were the most abundant (43.68%, 12.32% and 10.08%, respectively. Haemonais waldvogeli was found in all of the seasons studied, what demonstrates its affinity for this kind of substrate. The results indicate that several Naididae species find in the umbilicus of these snails's shells (which contains fine detritus a favorable habitat for establishing themselves.A família Ampullaridae, pertencente à classe Gastropoda, é caracterizada por organismos de água doce com ampla distribuição na região tropical. Vermes Oligochaeta associados a esses caracóis podem ser encontrados habitando o umbílico de suas conchas. Devido à carência de informação sobre a ecologia desses vermes, o presente trabalho centrou-se em um levantamento de espécies de Oligochaeta associadas ao molusco Pomacea bridgesii (Reeve, 1856. Em amostragens realizadas no inverno e na primavera de 2003 e no verão de 2004, foram observados 209 caracóis, sendo que somente em 58 deles foi detectada a presença de vermes Oligochaeta, correspondendo a uma incidência de 27,75%. Foram encontrados, no total, 89 oligoquetos, todos da fam

  14. Chironomidae and Oligochaeta for water quality evaluation in an urban river in southeastern Brazil.

    Science.gov (United States)

    Rosa, Beatriz Jabour Figueiraujo Vescovi; Rodrigues, Luciana Falci Theza; de Oliveira, Gilmar Simões; da Gama Alves, Roberto

    2014-11-01

    Considering the importance of benthic macroinvertebrates for diagnosis of variations in the ecological conditions of aquatic habitats, the aim of this study was to investigate the structure of the Chironomidae and Oligochaeta assemblages along an organic pollution gradient. The fauna specimens were obtained with the use of artificial substrates, and the environmental variables were recorded at five sites of the São Lourenço River, during 12 months. Metrics of the assemblage and detrended correspondence analysis were used to verify the response of the fauna to the pollution gradient. Procrustes analysis was used to verify whether the data on the Chironomidae and Oligochaeta assemblages, as well as the taxonomic and numerical resolution of these groups, provide similar results in relation to the pollution gradient. The richness, evenness, and taxonomic composition of the Chironomidae and Oligochaeta assemblages varied significantly among the collection sites, with distinct conservation conditions. Genera of the subfamilies Orthocladiinae and Tanypodinae were associated with the sites upstream of the urban area, where the dissolved oxygen levels are higher. Species of Oligochaeta and the genus Chironomus were associated with more organically polluted sites. No concordance was observed in the response of the Chironomidae and Oligochaeta assemblages in relation to the environmental variables, indicating the need to use both groups in biomonitoring studies. On the other hand, both the data on composition (presence or absence) and those on the lowest taxonomic resolution (abundance of subfamilies) were effective to diagnose the pollution gradient in the river studied. Therefore, when the environmental conditions along a river's gradient are contrasting, we suggest the use of the lowest taxonomic resolution of Chironomidae and Oligochaeta in biomonitoring. That procedure considerably reduces the assessment time, besides being a method that can be used by people not

  15. Penonyx excavatus (Oligochaeta)

    African Journals Online (AJOL)

    grO\\vth and cocoon production and the life cycle was described by Hallatt, Reinecke & Viljocn (1990). Publica- tions on the moisture requirements (Hallatt, Viljoen & Rei- necke 1992) and the influence of wonn densiIY on cocoon production (Reinecke & Reinecke 1994) also appeared. Studies on the biology of this species ...

  16. Checklist of the earthworm fauna of Croatia (Oligochaeta: Lumbricidae).

    Science.gov (United States)

    Kutuzović, Davorka Hackenberger; Kutuzović, Branimir Hackenberger

    2013-01-01

    A checklist of the Croatian earthworm fauna (Oligochaeta: Lumbricidae) is presented, including published records and authors' personal data. This is the first checklist for Croatia only, with comprehensive information for each earthworm species regarding ecological category, habitat, distribution type and distribution in Croatia. The currently known earthworm fauna of Croatia comprises 68 species belonging to 17 genera, with Octodrilus being the species-richest genus (15 species). Chorologically these species can be allocated to 13 different types of distribution. Nineteen species are endemic of which 10 species are endemic to Croatia and 9 species are endemic to Croatia and neighbouring countries (Italy, Slovenia, Hungary, and Montenegro). The endemic earthworms are distributed in the areas of higher altitudes in the Continental and Alpine biogeographic region, mostly covered with forest or autochtonous vegetation.

  17. Taxonomy and Ecology of Sponge-AssociateMarionina spp. (Clitellata : Enchytraeidae) from the Horomatangi Geothermal System of Lake Taupo, New Zealand

    OpenAIRE

    Rota, Emilia; Manconi, Renata

    2004-01-01

    The dissection of Heterorotula sponges collected in an area of geothermal activity at 126–145 m depth on the floor of Lake Taupo (de Rondeet al., 2002) revealed a dense population of associated Enchytraeidae. They represent three species of Marionina, two of which known but exotic (the Palaearctic M. ripariaBretscher, 1899 and the Chinese M. seminudaXie and Rota, 2001), and one new to science, M. spongicola sp. n. This is the first report of an ecological association between enchytraeids and ...

  18. Taxonomy and Ecology of Sponge-Associate Marionina spp. (Clitellata: Enchytraeidae) from the Horomatangi Geothermal System of Lake Taupo, New Zealand

    Science.gov (United States)

    Rota, Emilia; Manconi, Renata

    2004-01-01

    The dissection of Heterorotula sponges collected in an area of geothermal activity at 126-145 m depth on the floor of Lake Taupo (de Ronde et al., 2002) revealed a dense population of associated Enchytraeidae. They represent three species of Marionina, two of which known but exotic (the Palaearctic M. riparia Bretscher, 1899 and the Chinese M. seminuda Xie and Rota, 2001), and one new to science, M. spongicola sp. n. This is the first report of an ecological association between enchytraeids and poriferans in the lake profundal zone. The possible nature of such relationship (casual contact for feeding or dwelling for food and shelter) is discussed. (

  19. Factors affecting assemblage attributes of freshwater Oligochaeta in Neotropical shallow floodplain lakes

    Directory of Open Access Journals (Sweden)

    Vanessa Ernandes de Amo

    2017-12-01

    Full Text Available Abstract Aim: Identify the effects of sediment composition and water conditions on diversity, richness, evenness, density and composition of freshwater Oligochaeta in shallow floodplain lakes. Methods We sampled 13 shallow floodplain lakes quarterly during the year 2010 in the Upper Paraná River floodplain. In each lake, four sediment samples were taken from the shore and central regions, three of them were used for biological analysis, and one for granulometric analysis. Concomitantly, temperature, dissolved oxygen, pH, conductivity, alkalinity, turbidity and chlorophyll-a were also measured. Initially, the biological samples were analyzed by a stereoscopic microscope. Oligochaeta individuals were identified under optical microscope at the lowest possible taxonomic level. For data analysis, we quantified density, richness, evenness and diversity index of freshwater Oligochaeta. In order to show differences between the months and the analyzed lakes, in relation to the percentages of coarse and fine organic material, the nonparametric Kruskal Wallis test was used. We also calculated the sediment granulometric diversity using the Shannon-Wienner index, using a simple regression analysis. We correlated assemblage attributes of Oligochaeta with sediment diversity and the assemblage species with the limnological variables using the Spearman correlation. Results A total of 2,090 individuals were found distributed among 27 species. From the total individuals number, 57% were Pristina americana, followed by Dero (Dero righii with 13%. Assemblage attributes were not significantly correlated with sediment diversity, and 7 of the 27 species recorded showed significant correlations with at least some of the abiotic variables. Conclusions We verified that the abiotic variables of the water present greater influence on the attributes of the assemblage of freshwater Oligochaeta, when compared with sediment influences. Although we found low local diversity of

  20. The semi-aquatic freshwater earthworms of the genus Glyphidrilus Horst, 1889 from Thailand (Oligochaeta, Almidae) with re-descriptions of several species

    Science.gov (United States)

    Chanabun, Ratmanee; Sutcharit, Chirasak; Tongkerd, Piyoros; Panha, Somsak

    2013-01-01

    Abstract The semi-aquatic freshwater earthworm genus Glyphidrilus Horst, 1889 from Thailand was investigated based on extensive recent collecting. The species in this genus were characterized by their external and internal morphological characters of the location of wings, genital openings, genital organ structures and their locations, as well as the dimensions of body length and number of segments. Several type specimens were compared with both previous and newly collected materials. Ten new species are described from several river systems in Thailand; as Glyphidrilus borealis sp. n., Glyphidrilus chaophraya sp. n., Glyphidrilus chiensis sp. n., Glyphidrilus huailuangensis sp. n., Glyphidrilus kratuensis sp. n., Glyphidrilus quadratus sp. n., Glyphidrilus trangensis sp. n., Glyphidrilus wararamensis sp. n., Glyphidrilus vangthongensis sp. n. and Glyphidrilus vesper sp. n. Each species is endemic to a single river system. All 26 previously described species are re-described, and eight lectotypes have been designated. An identification key and a morphological comparison summary are provided. PMID:23653518

  1. First record of Bothrioneurum vejdovskyanum Štolc, 1886 (Oligochaeta, Tubificidae in Serbia

    Directory of Open Access Journals (Sweden)

    Vasiljević Božica

    2012-01-01

    Full Text Available We report the discovery of Bothrioneurum vejdovskyanum Štolc, 1886 (Annelida: Oligochaeta: Tubificidae: Rhyacodrilinae in Serbian freshwaters. Fifteen specimens were found in the middle course of the River Ibar (southern Serbia, at a locality where the macrolithal type of substrate and strong currents prevail. These organisms were found together with Stylodrilus heringianus (Claparede, 1862. They were among the most abundant Oligochaeta species. The species are described and its biology and distribution are discussed. The present record contributes to the knowledge on the general distribution of this rare species, particularly in the Balkans (southeastern Europe. [Acknowledgments. This work was supported by the Ministry of Education and Science of the Republic of Serbia, Projects No. ON 173025 and III 43002

  2. New species and new records of earthworms of the genus Drawida from Kerala part of the Western Ghats biodiversity hotspot, India (Oligochaeta, Moniligastridae).

    Science.gov (United States)

    Narayanan, S Prasanth; Sathrumithra, S; Christopher, G; Julka, J M

    2017-01-01

    Two new species of Drawida Michaelsen, 1900, namely Drawida polydiverticulata Narayanan & Julka, sp. n. and Drawida thomasi Narayanan & Julka, sp. n. , are described from material collected from the Indian state of Kerala, which lies in the Western Ghats biodiversity hotspot. Drawida elegans Rao, 1921, Drawida kanarensis Stephenson, 1917, Drawida modesta Rao, 1921, Drawida somavarpatana Rao, 1921, and Drawida thurstoni Gates, 1945 are recorded for the first time from the state.

  3. Micro-PIXE studies of Cd distribution in the nephridia of the earthworm Eisenia fetida (Oligochaeta)

    Energy Technology Data Exchange (ETDEWEB)

    Prinsloo, M.W. E-mail: 9341188@narga.sun.ac.za; Reinecke, S.A.; Przybylowicz, W.J.; Mesjasz-Przybylowicz, J.; Reinecke, A.J

    1999-09-02

    The distribution and accumulation of Cd in the nephridia of earthworms of the species Eisenia fetida (Oligochaeta) was studied using the NAC nuclear microprobe. Worms were exposed to CdSO{sub 4} in a cattle manure substrate. Elemental maps were obtained using the true elemental imaging system (dynamic analysis). It was found that at a substrate concentration of 300 mg kg{sup -1} CdSO{sub 4}, Cd did accumulate in the nephridia, showing clear patterns in its distribution within this organ. It accumulated to the greatest extent in the region between the nephridiopore and first loop, and the urinary vasiculus, reaching values of 890 {+-} 40 mg kg{sup -1} and 570 {+-} 20 mg kg{sup -1} in these regions, respectively. This is in contrast to the lower concentrations in the body wall (76 {+-} 15 mg kg{sup -1}) of the worm.

  4. Neotypification of Drawida hattamimizu Hatai, 1930 (Annelida, Oligochaeta, Megadrili, Moniligastridae as a model linking mtDNA (COI sequences to an earthworm type, with a response to the ‘Can of Worms’ theory of cryptic species

    Directory of Open Access Journals (Sweden)

    Robert Blakemore

    2010-03-01

    Full Text Available A neotype is designated for the large and ecologically interesting species of Japanese earthworm, Drawida hattamimizu Hatai, 1930. Its morphological redescription is unambiguously combined with the neotype’s sequence of the Cytochrome Oxidase I (COI locus of the mitochondrial DNA, the first time an earthworm species’ type has been thus profiled. Probably it is an introduced exotic rather than a translocated native, with a patchy distribution that appears only partly defined in Japan where it is both a restricted and an endangered listed species. Brief comparison of sympatric Drawida japonica (Michaelsen, 1892 to the type-species Drawida barwelli (Beddard, 1886 – and this latter from Shiga appears as a new record for Japan – allows the diagnosis of Drawida Michaelsen, 1900 to be amended slightly. The contentious issue of molecular ‘cryptic species’ is queried in relation to the lack of molecular data from type-specimens, the unique name-bearing references employed in zoological nomenclature. Without such reference, neither eco-taxonomic nor genomic studies of earthworm taxa can progress. In this regard, questions are raised concerning the molecular identities and provisional divergences of cosmopolitan generotypes Allolobophora chlorotica chlorotica (Savigny, 1826, the Aporrectodea caliginosa (Savigny, 1826 species-complex sensu Blakemore (2002, and of ecotoxicological standard test-species icon Eisenia fetida fetida (Savigny, 1826. Resurrection of their respective synonyms is mooted. Resolution of relationships within and between earthworm genera and families without DNA testing of the representative type-species and type-genera is flagged as another crucial concern.

  5. The Oligochaeta (Annelida, Clitellata) of the St. Lawrence Great Lakes region: An update

    Science.gov (United States)

    Spencer, Douglas R.; Hudson, Patrick L.

    2003-01-01

    An updated oligochaete species list for the Great Lakes region is provided. The list was developed through the reexamination of the taxa reported in a previous report in 1980, addition of new taxa or records collected from the region since 1980, and an update of taxonomy commensurate with systematic and nomenclatural changes over the intervening years since the last review. The authors found 74 papers mentioning Great Lakes oligochaete species. The majority of these papers were published in the 1980s. The literature review and additional collections resulted in 15 species being added to the previous list. Nine taxa were removed from the previous list due to misidentification, synonymies, level of identification, or inability to confirm the identity. Based on this review, 101 species of Oligochaeta are now known from the St. Lawrence Great Lakes watershed. Of these, 95 species are known from the St. Lawrence Great Lakes proper, with an additional 6 species recorded from the inland waters of the watershed. The greatest diversity of oligochaete species was found in the inland waters of the region (81) followed by Lake Huron (72), Lake Ontario (65), Lake Erie (64), Lake Superior (63), Lake Michigan (62), St. Marys River (60), Niagara River (49), Saginaw Bay (44), St. Clair River (37), Lake St. Clair (36), St. Lawrence River (27), and the Detroit River (21). Three species are suspected of being introduced, Branchiura sowerbyi, Gianius aquaedulcisand Ripistes parasita, and two are believed to be endemic, Thalassodrilus hallae andTeneridrilus flexus.

  6. The Genus Diporochaeta (Oligochaeta Megascolecidae) in Queensland

    NARCIS (Netherlands)

    Jamieson, B.G.M.

    1976-01-01

    Perionychella is reassigned to Diporochaeta as a junior synonym. 9 new species are added to the 8 previously known Queensland species of Diporochaeta, all of which are redescribed, bringing the generic total for Australia to 77 named species. Distribution of the genus is disjunct, the Queensland

  7. Complete mitochondrial genome of four pheretimoid earthworms (Clitellata: Oligochaeta) and their phylogenetic reconstruction.

    Science.gov (United States)

    Zhang, Liangliang; Jiang, Jibao; Dong, Yan; Qiu, Jiangping

    2015-12-15

    Among oligochaetes, the Pheretima complex within the Megascolecidae is a major earthworm group. Recently, however, the systematics of the Pheretima complex based on morphology are challenged by molecular studies. Since little comparative analysis of earthworm complete mitochondrial genomes has been reported yet, we sequenced mitogenomes of four pheretimoid earthworm species to explore their phylogenetic relationships. The general earthworm genomic features are also found in four earthworms: all genes transcribed from the same strand, the same initiation codon ATG for each PCGs, and conserved structures of RNA genes. Interestingly we find an extra potential tRNA-leucine (CUN) in Amynthas longisiphonus. The earthworm mitochondrial ATP8 exhibits the highest evolutionary rate, while the gene CO1 evolves slowest. Phylogenetic analysis based on protein-coding genes (PCGs) strongly supports the monophyly of the Clitellata, Hirudinea, Oligochaeta, Megascolecidae and Pheretima complex. Our analysis, however, reveals non-monophyly within the genara Amynthas and Metaphire. Thus the generic divisions based on morphology in the Pheretima complex should be reconsidered. Copyright © 2015 Elsevier B.V. All rights reserved.

  8. Invasion of the tropical earthworm Pontoscolex corethrurus (Rhinodrilidae, Oligochaeta in temperate grasslands

    Directory of Open Access Journals (Sweden)

    Diana Ortiz-Gamino

    2016-10-01

    Full Text Available The tropical earthworm Pontoscolex corethrurus (Rhinodrilidae, Oligochaeta presents a broad distribution (e.g., 56 countries from four continents. It is generally assumed that temperature appears to limit the success of tropical exotic species in temperate climates. However, the distribution range of this species could advance towards higher elevations (with lower temperatures where no tropical species currently occur. The aim of this study was to evaluate the soil and climatic variables that could be closely associated with the distribution of P. corethrurus in four sites along an altitudinal gradient in central Veracruz, Mexico. We predicted that the distribution of P. corethrurus would be more related to climate variables than edaphic parameters. Five sampling points (in the grassland were established at each of four sites along an altitudinal gradient: Laguna Verde (LV, La Concepción (LC, Naolinco (NA and Acatlán (AC at 11–55, 992–1,025, 1,550–1,619 y 1,772–1,800 masl, respectively. The climate ranged from tropical to temperate along the altitudinal gradient. Ten earthworm species (5 Neotropical, 4 Palearctic and 1 Nearctic were found along the gradient, belonging to three families (Rhinodrilidae, Megascolecide and Lumbricidae. Soil properties showed a significant association (positive for Ngrass, pH, permanent wilting point, organic matter and P; and negative for Total N, K and water-holding capacity with the abundance of the earthworm community. Also there seems to be a relationship between climate and earthworm distribution along the altitudinal gradient. P. corethrurus was recorded at tropical (LV and LC and temperate sites (NA along the altitudinal gradient. Our results reveal that soil fertility determines the abundance of earthworms and site (climate can act as a barrier to their migration. Further research is needed to determine the genetic structure and lineages of P. corethrurus along altitudinal gradients.

  9. Microplastics in the terrestrial ecosystem: Implications for Lumbricus terrestris (Oligochaeta, Lumbricidae)

    NARCIS (Netherlands)

    Huerta Lwanga, Esperanza; Gertsen, H.F.; Gooren, H.; Peters, P.D.; Salanki, T.E.; Ploeg, van der M.J.C.; Besseling, E.; Koelmans, A.A.; Geissen, V.

    2016-01-01

    Plastic debris is widespread in the environment, but information on the effects of microplastics on terrestrial fauna is completely lacking. Here, we studied the survival and fitness of the earthworm Lumbricus terrestris (Oligochaeta, Lumbricidae) exposed to microplastics (Polyethylene, <150 μm)

  10. The life-cycle of the compost worm Eisenia ietida (Oligochaeta)

    African Journals Online (AJOL)

    161. The life-cycle of the compost worm Eisenia ietida (Oligochaeta). J.M. Venter* and A.J. Reinecke. Department of Zoology, Potchefstroom University for CHE, Potchefstroom, 2520 Republic of South Africa. Received 29 January, 1987; accepted 29 January 1988. To determine the full potential of the compost worm Eisenia ...

  11. Avoidance test with Enchytraeus albidus (Enchytraeidae): Effects of different exposure time and soil properties

    International Nuclear Information System (INIS)

    Amorim, Monica J.B.; Novais, Sara; Roembke, Joerg; Soares, Amadeu M.V.M.

    2008-01-01

    Enchytraeids are ecologically relevant soil species and are commonly used in standardized toxicity tests. Their rapid reaction to a chemical exposure can be used as a toxicological measurement endpoint that assesses the avoidance behavior. The objectives of this investigation were to determine the effects of soil properties on the avoidance behavior of Enchytraeus albidus and to optimize the duration of avoidance test. The avoidance tests included (1) exposures in OECD artificial soil with standard or modified properties (pH, clay or peat content), and (2) exposures to copper chloride, cadmium chloride, and to the organic pesticides dimethoate and phenmedipham for different time periods. Results showed that alteration of OECD soil constituents significantly affected the avoidance behavior of enchytraeids, and that the 48-h exposure was the optimal duration of the test. Consideration of soil properties is important for selecting appropriate experimental design and interpreting the results of the enchytraeid avoidance test. - Optimal duration of the avoidance tests with potworm Enchytraeus albidus is 48 h; soil properties can affect performance of the test species

  12. Pinpointing cryptic borders: Fine-scale phylogeography and genetic landscape analysis of the Hormogaster elisae complex (Oligochaeta, Hormogastridae).

    Science.gov (United States)

    Marchán, Daniel F; Fernández, Rosa; de Sosa, Irene; Díaz Cosín, Darío J; Novo, Marta

    2017-07-01

    Spatial and temporal aspects of the evolution of cryptic species complexes have received less attention than species delimitation within them. The phylogeography of the cryptic complex Hormogaster elisae (Oligochaeta, Hormogastridae) lacks knowledge on several aspects, including the small-scale distribution of its lineages or the palaeogeographic context of their diversification. To shed light on these topics, a dense specimen collection was performed in the center of the Iberian Peninsula - resulting in 28 new H. elisae collecting points, some of them as close as 760m from each other- for a higher resolution of the distribution of the cryptic lineages and the relationships between the populations. Seven molecular regions were amplified: mitochondrial subunit 1 of cytochrome c oxidase (COI), 16S rRNA and tRNA Leu, Ala, and Ser (16S t-RNAs), one nuclear ribosomal gene (a fragment of 28S rRNA) and one nuclear protein-encoding gene (histone H3) in order to infer their phylogenetic relationships. Different representation methods of the pairwise divergence in the cytochrome oxidase I sequence (heatmap and genetic landscape graphs) were used to visualize the genetic structure of H. elisae. A nested approach sensu Mairal et al. (2015) (connecting the evolutionary rates of two datasets of different taxonomic coverage) was used to obtain one approximation to a time-calibrated phylogenetic tree based on external Clitellata fossils and a wide molecular dataset. Our results indicate that limited active dispersal ability and ecological or biotic barriers could explain the isolation of the different cryptic lineages, which never co-occur. Rare events of long distance dispersal through hydrochory appear as one of the possible causes of range expansion. Copyright © 2017 Elsevier Inc. All rights reserved.

  13. Microplastics in the Terrestrial Ecosystem: Implications for Lumbricus terrestris (Oligochaeta, Lumbricidae).

    Science.gov (United States)

    Huerta Lwanga, Esperanza; Gertsen, Hennie; Gooren, Harm; Peters, Piet; Salánki, Tamás; van der Ploeg, Martine; Besseling, Ellen; Koelmans, Albert A; Geissen, Violette

    2016-03-01

    Plastic debris is widespread in the environment, but information on the effects of microplastics on terrestrial fauna is completely lacking. Here, we studied the survival and fitness of the earthworm Lumbricus terrestris (Oligochaeta, Lumbricidae) exposed to microplastics (Polyethylene, digestion of ingested organic matter, microplastic was concentrated in cast, especially at the lowest dose (i.e., 7% in litter) because that dose had the highest proportion of digestible organic matter. Whereas 50 percent of the microplastics had a size of earthworms. These concentration-transport and size-selection mechanisms may have important implications for fate and risk of microplastic in terrestrial ecosystems.

  14. Littoral Fauna of Oligochaeta (Annelida of Lake Eğirdir (Isparta.

    Directory of Open Access Journals (Sweden)

    Naime Arslan

    2015-12-01

    Full Text Available Egirdir Gölü (Isparta litoral Oligochaeta (Annelida faunası. Bu çalışma Türkiye’nin güney batısında 918 m yükseklikte yer alan (38°00'N, 30°54'E ve önemli bir kuş alanı olan Eğirdir Gölü’nün litoral Oligochaeta faunasını belirlemek amacıyla yapılmıştır. Örnekler Mayıs 2002 ile Ekim 2002 tarihleri arasında 17 istasyondan toplanmıştır. Araştırma sonucunda 17 istasyondan 15 cinse ait 22 tür; Lumbriculidae familyasından 1, Haplotaxidae familyasından 1, Tubificidae familyasından 9 ve Naididae familyasından 11 tür belirlenmiştir. Eğirdir Gölü’nün litoral Oligochaeta faunası geniş dağılım gösteren tubificid ve naidid taxalarından oluşmaktadır. Çalışma alanında Tubifex tubifex (%19.2, Limnodrilus hoffmeisteri (%17.9, ve Potamothrix hammoniensis (%11.3 ve Ophidonais serpentina (%9.3 en yüksek bolluğa sahip türler olarak belirlenmiştir. Shannon-Wiener çeşitlilik indeksine göre, Eğirdir Gölü 1.45 zenginliğe sahip olarak bulunmuş, 5. istasyon en yüksek çeşitliliği gösterirken (1.93, 11. istasyon en düşük çeşitliliğe sahip (0.97 olarak belirlenmiştir. Çalışma alanında Tubificidae populasyonunun yüksek olması ve gölün 1, 45 oranında düşük bir Oligochaeta tür çeşitliliğine sahip olması, gölün geleceğinin belirlenmesi için benzer çalışmaların periyodik olarak yapılması gerektiğini göstermektedir

  15. Branchiura sowerbyi (Oligochaeta, Naididae) como espécie-teste em bioensaios ecotoxicológicos

    OpenAIRE

    Haroldo Lobo dos Santos Nascimento

    2014-01-01

    Estudos com oligoquetas aquáticos aplicados à ecotoxicologia são quase inexistentes no Brasil, embora diversas agências reguladoras já tenham demonstrado interesse na inclusão da espécie Branchiura sowerbyi (Oligochaeta, Naididae) em protocolos de monitoramento de ambientes aquáticos tropicais. Com o objetivo de ampliar o conhecimento sobre o potencial de utilização desta espécie em ensaios ecotoxicológicos, efetuou-se ampla revisão bibliográfica entre 1950 e 2012, verificando-se discrepância...

  16. Naididae (Annelida, Oligochaeta associated with briophytes in Brotas, State of São Paulo, Brazil Naididae (Annelida, Oligochaeta associadas a briófitas em Brotas, Estado de São Paulo, Brasil

    Directory of Open Access Journals (Sweden)

    Guilherme Rossi Gorni

    2007-06-01

    Full Text Available Mosses and liverworts can be colonized by various invertebrates, including fresh water oligochaete worms. However, little information is available on the habits and habitats of this oligochaetes in Brazil. Therefore, the present study was undertaken to examine the occurrence of naidids in mosses, as well as to broaden the knowledge about the habitats of these oligochaetes. Sampling of bryophytes adhered to rock substrates in the rapids of the Jacaré Pepira River (municipality of Brotas, São Paulo, Brazil and to a vertical rock wall of a waterfall near the river revealed 191 Naididae individuals of the species Naiscommunis Piguet, 1906, Pristinellajenkinae (Stephenson, 1931 and Pristinellamenoni (Aiyer, 1929. We believe this to be the first record of naidids associated with mosses in Brazil.Musgos e hepáticas podem ser colonizados por diversos invertebrados, incluindo os vermes Oligochaeta. Contudo, existe pouca informação na literatura brasielira sobre os hábitos e hábitats destes oligoquetos. Portanto, o presente trabalho foi realizado para examinar a ocorrência de naidídeos em musgos, bem como aumentar o conhecimento dos habitats destes anelídeos. A coleta de briófitas aderidas a substratos rochosos nas corredeiras do Rio Jacaré Pepira (Brotas-SP e à parede rochosa vertical de uma cachoeira localizada nas proximidades do referido rio revelou 191 indivíduos de três espécies de Naididae: Naiscommunis Piguet, 1906, Pristinellajenkinae (Stephenson, 1931 e Pristinellamenoni (Aiyer, 1929. Acredita-se que este seja o primeiro registro de Naididae vivendo em briófitas no Brasil.

  17. Dero (Allodero lutzi Michaelsen, 1926 (Oligochaeta: Naididae associated with Scinax fuscovarius (Lutz, 1925 (Anura: Hylidae from Semi-deciduous Atlantic Rain Forest, southern Brazil

    Directory of Open Access Journals (Sweden)

    FH. Oda

    Full Text Available Amphibians are hosts for a wide variety of ecto- and endoparasites, such as protozoans and parasitic worms. Naididae is a family of Oligochaeta whose species live on a wide range of substrates, including mollusks, aquatic macrophytes, sponges, mosses, liverworts, and filamentous algae. However, some species are known as endoparasitic from vertebrates, such as Dero (Allodero lutzi, which is parasitic of the urinary tracts of frogs, but also have a free-living stage. Specimens in the parasitic stage lack dorsal setae, branchial fossa, and gills. Here we report the occurrence of D. (A. lutzi associated with anuran Scinax fuscovarius from Semi-deciduous Atlantic Rain Forest in southern Brazil. The study took place at the Caiuá Ecological Station, Diamante do Norte, Paraná, southern Brazil. Seven specimens of S. fuscovarius were examined for parasites but only one was infected. Parasites occurred in ureters and urinary bladder. Previous records of this D. (A. lutzi include the Brazilian States of Santa Catarina, São Paulo, Rio de Janeiro, and Minas Gerais, as well as Cuba and North America. This is a new locality record for this species in Brazil. Reports of Dero (Allodero lutzi are rare, due to difficulty of observation, and such events are restricted only the fortuitous cases. It is important to emphasize the necessity of future studies, which are fundamental to the understanding of biological and ecological aspects of this species.

  18. Life-cycle of the African nightcrawler, Eudrilus eugeniae (Oligochaeta)

    African Journals Online (AJOL)

    1988-03-31

    Mar 31, 1988 ... producer, the life history of this species was studied. The development ... hatching success of 84% and 2,7 hatchlings per cocoon that hatched. Sexual ... The experimental work was conducted ... Sartorius analytical balance.

  19. Proctodrilus thaleri (Oligochaeta: Lumbricidae auf einem Hang in Oltenien

    Directory of Open Access Journals (Sweden)

    Höser, N.

    2013-06-01

    Full Text Available The earthworm species Proctodrilus thaleri Höser & Zicsi, 2009, a Carpathian endemic, was found in the loess-like sediment of a slope in Oltenia region of Romania. On the basis of the pedological findings at the site it was concluded that there the species inhabits a pseudogley-lessived-terra fusca interference zone, characterized by recent clay translocation, and very rare in Central Europe. Consequently the species differs with respect to habitat from P. tuberculatus (Černosvitov, 1935, which was encountered on other slopes and is probably tied to soils with advanced, relict, or recent clay translocation, as is the case in interference-free lessived soils or pseudogley-lessived soils.

  20. New data to the earthworm fauna of Israel (Oligochaeta, Lumbricidae

    Directory of Open Access Journals (Sweden)

    Szederjesi, T.

    2013-11-01

    Full Text Available Elaborating several smaller earthworm samples collected in different parts of Israel resulted in recording 20 earthworm species including Bimastos parvus (Eisen, 1874 a North American peregrine which represents new record for the country. Three other species; Dendrobaena nevoi Csuzdi & Pavlíček, 1999, Healyella jordanis (Csuzdi & Pavlíček, 1999and Perelia shamsi Csuzdi & Pavlíček, 2005 were first recorded after their original descriptions. The present list of lumbricidearthworms recorded for Israel is raised to 28.

  1. Earthworms newly from Mongolia (Oligochaeta, Lumbricidae, Eisenia

    Directory of Open Access Journals (Sweden)

    Robert Blakemore

    2013-04-01

    Full Text Available Two new megadrile earthworms from the steppes, the first species wholly from Outer Mongolia, are ascribed to the partially parthenogenetic Eisenia nordenskioldi (Eisen, 1879 species-complex. Taxonomic justification of sympatric Eisenia nordenskioldi mongol and E. nordenskioldi onon ssp. n. are supported by mtDNA COI barcodes. The unreliability of molecular differentiation based on voucher names compared to definitive types is again demonstrated, as pertains to the ultimate Eisenia andrei Bouché, 1972 synonym of the E. fetida (Savigny, 1826 sibling species-complex composed of more than a dozen prior names. Similar species described from Northeast China [formerly Manchuria] and North Korea are briefly considered, albeit they are intermittently held in synonymy of cosmopolitan Aporrectodea rosea (Savigny, 1826 along with many other taxa including some exotic lumbricids initially found in India. Japanese and North American lumbricids are also mentioned. Distributions are discussed and an annotated checklist of all nine Siberian/sub-arctic E. nordenskioldi ssp. is appended.

  2. The effect of grassland management on enchytraeids (Oligochaeta) communities

    DEFF Research Database (Denmark)

    Maraldo, Kristine; Schmelz, Rüdiger; Christensen, Bent Tolstrup

    2012-01-01

    Enchytraeids (small white earthworms between 3 to 35 mm) are important regulators of nitrogen turnover in grasslands, as their activities accelerate the decomposition and nutrient recycling processes. In this study, the effect of management on species composition, abundance and biomass of the enc...... biomass and density of the grazed plots are due to compaction by grazing animals....

  3. Earthworms newly from Mongolia (Oligochaeta, Lumbricidae, Eisenia)

    Science.gov (United States)

    Blakemore, Robert J.

    2013-01-01

    Abstract Two new megadrile earthworms from the steppes, the first species wholly from Outer Mongolia, are ascribed to the partially parthenogenetic Eisenia nordenskioldi (Eisen, 1879) species-complex. Taxonomic justification of sympatric Eisenia nordenskioldi mongol and Eisenia nordenskioldi onon ssp. n. are supported by mtDNA COI barcodes. The unreliability of molecular differentiation based on voucher names compared to definitive types is again demonstrated, as pertains to the ultimate Eisenia andrei Bouché, 1972 synonym of the Eisenia fetida (Savigny, 1826) sibling species-complex composed of more than a dozen prior names. Similar species described from Northeast China [formerly Manchuria] and North Korea are briefly considered, albeit they are intermittently held in synonymy of cosmopolitan Aporrectodea rosea (Savigny, 1826) along with many other taxa including some exotic lumbricids initially found in India. Japanese and North American lumbricids are also mentioned. Distributions are discussed and an annotated checklist of all nine Siberian/sub-arctic Eisenia nordenskioldi ssp. is appended. PMID:23798894

  4. Endemic earthworms (Oligochaeta: Lumbricidae) of the Balkan Peninsula: a review.

    Science.gov (United States)

    Trakić, Tanja; Valchovski, Hristo; Stojanović, Mirjana

    2016-11-10

    A list of the endemic earthworms of the Balkan Peninsula is presented. Comprehensive information on the ecology, distribution on the Balkan Peninsula and zoogeographical type of all endemics is given. The list comprises 90 species and subspecies, belonging to 11 genera of the family Lumbricidae. The largest number of the Balkan endemic earthworms belongs to a narrow range group (63.3%). Broad range endemic species take part with 36.7%. Our study shows that the degree of endemism on the Balkan Peninsula is extremely high (about 40%) suggesting an important process of autochthonous speciation on the Balkan Peninsula. This appearance is attributable to relative isolation of the mountains compared to the lowlands within the context of paleoenvironmental changes.

  5. Two new Korean earthworms (Annelida, Oligochaeta, Megadrilacea, Megascolecidae)

    Science.gov (United States)

    Blakemore, Robert J.; Lee, Seunghan; Lee, Wonchoel; Seo, Hong-Yul

    2013-01-01

    Abstract Two Korean endemic pheretimoid Amynthas Kinberg, 1867 species belonging in family Megascolecidae s. stricto are sketched, dissected and described. Amynthas daeari Blakemore sp. n. has spermathecae in 6/7/8 complying with an Amynthas tokioensis spp-group, whilst Amynthas jinburi Blakemore sp. n. has spermathecal pores in 5 & 6 strictly complying with Sims and Easton’s (1972) Amynthas canaliculatus-group. A definitive COI gene barcode is provided for the holotype of Amynthas daeari but the age since collection or preservation of the Amynthas jinburi type in 2000 precluded its mtDNA extraction at this time. PMID:23794922

  6. Determination of toxicity of spoil substrates after brown coal mining using a laboratory reproduction test with .i.Enchytraeus crypticus./i. (Oligochaeta)

    Czech Academy of Sciences Publication Activity Database

    Frouz, Jan; Krištůfek, Václav; Bastl, J.; Kalčík, Jiří; Vaňková, H.

    2005-01-01

    Roč. 162, 1-2 (2005), s. 37-47 ISSN 0049-6979 R&D Projects: GA ČR(CZ) GA526/01/1055; GA ČR(CZ) GA526/03/1259; GA AV ČR(CZ) 1QS600220501 Institutional research plan: CEZ:AV0Z60660521 Keywords : brown coal mining * chronic toxicity test * enchytraeidae Subject RIV: EH - Ecology, Behaviour Impact factor: 1.258, year: 2005

  7. Is similar the distribution of Chironomidae (Diptera and Oligochaeta (Annelida, Clitellata in a river and a lateral fluvial area?

    Directory of Open Access Journals (Sweden)

    Daniela Aparecida Silveira Cesar

    2017-05-01

    Full Text Available Abstract Numerous factors may affect the pattern of distribution of benthic fauna in a river mouth region and, among the macroinvertebrates, Chironomidae and Oligochaeta are the most abundant groups and most tolerant to environmental changes. Aim The aim of this study was to evaluate the controlling factors of and a possible similarity between Chironomidae and Oligochaeta assemblies at two close sites, the mouth of the Guareí River into the Paranapanema River (São Paulo, Brazil and its lateral fluvial area. Methods Fauna samples were collected every three months during one year. Water physical and chemical variables and sediment variables were also determined in the same period. Results Both assemblies presented low density variability over time in the lateral area due to sediment characteristics and environmental factors. Taxa Caladomyia, Parachironomus, Pristina sp., Pristina osborni, Bothrioneurum and Opistocysta funiculus were recorded at this site. The Guareí River presented both greater temporal and spatial variations, attributed mainly to a reduction in the water level. Greater organism abundance, especially of Chironomus and Tubificinae, was observed in the river. Conclusions Dissimilarity in temporal and spatial distributions of Chironomidae and Oligochaeta was attributed to peculiar characteristics of the two study sites, a river channel and a lateral area. Reduction in the water level over the year was the main controlling factor of Chironomidae and Oligochaeta richness and density in the river. In the lateral area, the presence and abundance of certain taxa were determined by the nature of the sediment and water physical and chemical variables.

  8. Sublethal toxicity and biotransformation of pyrene in Lumbriculus variegatus (Oligochaeta)

    International Nuclear Information System (INIS)

    Maeenpaeae, K.; Leppaenen, M.T.; Kukkonen, J.V.K.

    2009-01-01

    The aim of this work was to study the toxicity and biotransformation of polyaromatic hydrocarbon (PAH) pyrene in the oligochaete aquatic worm, Lumbriculus variegatus. PAHs are ubiquitous environmental pollutants that pose a hazard to aquatic organisms, and metabolizing capability is poorly known in the case of many invertebrate species. To study the toxicity and biotransformation of pyrene, the worm was exposed for 15 days to various concentrations of water-borne pyrene. The dorsal blood vessel pulse rate was used as a sublethal endpoint. Pyrene biotransformation by L. variegatus was studied and the critical body residues (CBR) were estimated for pyrene toxicity. The toxicokinetics of pyrene uptake was evaluated. A combination of radiolabeled ( 14 C) and nonlabeled pyrene was used in the exposures, and liquid scintillation counting (LSC) and high-pressure liquid chromatography were employed in both water and tissue residue analyses. The results showed that L. variegatus was moderately able to metabolize pyrene to 1-hydroxypyrene (1-HP), thus demonstrating that the phase-I-like oxidizing enzyme system metabolizes pyrene in L. variegatus. The amount of the 1-HP was 1-2% of the amount of pyrene in the worm tissues. The exposure to pyrene reduced the blood vessel pulse rate significantly (p < 0.05), showing that pyrene had a narcotic effect. The estimated CBRs remained constant during the exposure time, varying from 0.120 to 0.174 mmol pyrene/kg worm wet weight. The bioconcentration factors (BCF) decreased as exposure concentration increased. It was suggested that the increased toxicity of pyrene accounted for the decrease in BCFs by lowering the activity of the organism

  9. Assessing joint toxicity of chemicals in Enchytraeus albidus (Enchytraeidae) and Porcellionides pruinosus (Isopoda) using avoidance behaviour as an endpoint

    International Nuclear Information System (INIS)

    Loureiro, Susana; Amorim, Monica J.B.; Campos, Bruno; Rodrigues, Sandra M.G.; Soares, Amadeu M.V.M.

    2009-01-01

    Contamination problems are often characterized by complex mixtures of chemicals. There are two conceptual models usually used to evaluate patterns of mixture toxicity: Concentration Addition (CA) and Independent Action (IA). Deviations from these models as synergism, antagonism and dose dependency also occur. In the present study, single and mixture toxicity of atrazine, dimethoate, lindane, zinc and cadmium were tested in Porcellionides pruinosus and Enchytraeus albidus, using avoidance as test parameter. For both species patterns of antagonism were found when exposed to dimethoate and atrazine, synergism for lindane and dimethoate exposures (with the exception of lower doses in the isopod case study) and concentration addition for cadmium and zinc occurred, while the exposure to cadmium and dimethoate showed dissimilar patterns. This study highlights the importance of dose dependencies when testing chemical mixtures and that avoidance tests can also be used to asses the effects of mixture toxicity. - Avoidance behaviour to binary mixtures of chemicals in two edaphic species

  10. Adverse effects of fullerenes (nC{sub 60}) spiked to sediments on Lumbriculus variegatus (Oligochaeta)

    Energy Technology Data Exchange (ETDEWEB)

    Pakarinen, K., E-mail: kukka.tervonen@uef.fi [Department of Biology, University of Eastern Finland, 80101 Joensuu (Finland); Petersen, E.J. [Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD (United States); Leppaenen, M.T.; Akkanen, J.; Kukkonen, J.V.K. [Department of Biology, University of Eastern Finland, 80101 Joensuu (Finland)

    2011-12-15

    Effects of fullerene-spiked sediment on a benthic organism, Lumbriculus variegatus (Oligochaeta), were investigated. Survival, growth, reproduction, and feeding rates were measured to assess possible adverse effects of fullerene agglomerates produced by water stirring and then spiked to a natural sediment. L. variegatus were exposed to 10 and 50 mg fullerenes/kg sediment dry mass for 28 d. These concentrations did not impact worm survival or reproduction compared to the control. Feeding activities were slightly decreased for both concentrations indicating fullerenes' disruptive effect on feeding. Depuration efficiency decreased in the high concentration only. Electron and light microscopy and extraction of the worm fecal pellets revealed fullerene agglomerates in the gut tract but not absorption into gut epithelial cells. Micrographs also indicated that 16% of the epidermal cuticle fibers of the worms were not present in the 50 mg/kg exposures, which may make worms susceptible to other contaminants. - Highlights: > Effects of fullerene-spiked sediment on black worms were investigated. > Survival, growth, reproduction, and feeding rates were measured. > Exposure did not impact worm survival or reproduction. > Feeding rates and depuration efficiency were decreased. > Worms transferred fullerenes from the sediment to the sediment surface. - Exposure to fullerene-spiked sediment decreased black worms' feeding and depuration efficiency, but fullerenes did not appear to be absorbed into the microvilli.

  11. Populações de oligoquetos (Annelida: Oligochaeta em um Latossolo Vermelho submetido a sistemas de uso do solo

    Directory of Open Access Journals (Sweden)

    Silva Rogério Ferreira da

    2006-01-01

    Full Text Available O trabalho teve como objetivo avaliar a dinâmica da população de oligoquetos edáficos em sistemas de manejo agrícola e pecuário, tendo, como referência, uma área sob vegetação nativa. O trabalho foi conduzido no município de Dourados, MS, num solo classificado como Latossolo Vermelho distroférrico típico, sob sistema com preparo convencional (SC, plantio direto (SPD, integração lavoura/pecuária (SILP, pastagem contínua (PC e sistema natural (SN. As amostragens foram realizadas nas safras de verão e inverno, no período de 2000 a 2003. Os sistemas SPD, SILP e PC favoreceram o desenvolvimento e estabelecimento da população dos oligoquetos edáficos. O sistema natural apresentou uma alta população de oligoquetos edáficos, sendo a grande maioria constituída pelos organismos da família Enchytraeidae. Dentre os sistemas produtivos, o SPD favoreceu a ocorrência dessa família.

  12. Pontoscolex corethrurus (Annelida: Oligochaeta indicador de la calidad del suelo en sitios de Eucalyptus grandis (Myrtacea con manejo tumba y quema Pontoscolex corethrurus (Annelidae: Oligochaeta soil quality indicator in Eucalyptus grandis (Myrtacea sites with slash and burn management

    Directory of Open Access Journals (Sweden)

    Sheila Uribe

    2012-12-01

    grandis on earthworm population in Huimanquillo, Tabasco, Mexico. Three sites (average area of 1-1.5ha each with different management conditions were considered for soil and earthworm sampling (two depths and six replicates: without vegetation (SV and recent slash-burned (38 days, forest crops of five years of production of E. grandis (Euc, and secondary vegetation of 15 years (Acah. Soil physico-chemical properties (apparent density, humidity, texture, pH, Ntot, OM, P, K, cationic capacity were also evaluated, and earthworms were collected at the end of the rainy season (august-october 2007. We found that the sites soil is an acrisol acid, with pH 3.0-4.5 in the first 30cm depth. Organic matter content (OM and total nitrogen (Ntot in the recently burned sites were significantly lower (6-8% y 0.19-0.22%, respectively than in sites with vegetation (OM=9-11%; el Ntot=0.27-0.33%. Only one species (P. corethrurus was found in all the sampled areas, where most of the individuals were at juvenile stage (80%. The highest densities and biomass were found in Euc. treatment (166.4ind/m² y 36.8g/m² followed by Acah (138.7ind/m² y 19.1g/m² respectively, while the SV treatment showed of about an 80% reduced earthworm populations when compared to other treatments. Even though 15 years have passed over the secondary vegetation (Acah still some perturbations were observed as the low abundance of the oligochaeta group. We concluded that the management used to culture E. grandis produces negative effects over the abundance and diversity of earthworms and soil nutrient availability.

  13. Can behavioural responses of Lumbriculus variegatus (Oligochaeta) assess sediment toxicity? A case study with sediments exposed to acid mine drainage

    International Nuclear Information System (INIS)

    Sardo, A.M.; Soares, A.M.V.M.

    2010-01-01

    The Sao Domingos mine (Portugal) is, potentially, a good site for ecotoxicological studies, due to a pH and metal gradient of acid mine drainage. In this study, the toxicity of several mine sediments was evaluated using the aquatic oligochaete Lumbriculus variegatus as a test organism. Our hypothesis was that exposure to contaminated sediments would cause behavioural early warning responses in L. variegatus. Five sites, with pH ranging from 2.5 to 6.5, and with associated metals, were investigated. The results showed poor sediment quality in most of the collected sediments and Fe, S and As were the dominant elements in the samples. High mortalities were observed, ranging from 32.6 to 100%, indicating severe contamination. The collected sediments did not support good L. variegatus growth and significantly changed its behaviour. Early warning responses consisted of decreased locomotion and decreased peristaltic movements. A behaviour inhibition will affect the ecosystem balance by limiting the organisms' ability to avoid capture, which leads to a higher risk of predation. - Behavioural responses of the aquatic oligochaeta Lumbriculus variegatus may be used to detect early warning responses.

  14. Earthworms as Invasive Species in Latin America — the 2nd Latin American Meeting on Oligochaeta (Earthworm) Ecology and Taxonomy

    Science.gov (United States)

    Grizelle Gonzalez

    2006-01-01

    This special issue is based on scientific contributions presented at the 2nd Latin American Symposium of Earthworm Ecology and Taxonomy (ELAETAO, for its Spanish acronym) held in San Juan, Puerto Rico November 14-18, 2005. The first of these symposia was organized by George G. Brown and Klaus D. Sautter and held at Londrina, Brazil from December 1-3, 2003.The objective...

  15. The leaf-litter earthworm fauna (Annelida: Oligochaeta) of forests in ...

    African Journals Online (AJOL)

    A qualitative survey of the leaf-litter earthworm fauna of 11 selected indigenous forests in Limpopo Province, South Africa, was conducted to identify the species present, to describe the communities and to assess the relationship between indigenous and exotic species. A total of 8185 individuals from 17 species (five ...

  16. Checklist of the earthworms (Oligochaeta) of Kerala, a constituent of Western Ghats biodiversity hotspot, India.

    Science.gov (United States)

    Narayanan, S Prasanth; Sathrumithra, S; Christopher, G; Thomas, A P; Julka, J M

    2016-11-15

    A checklist of earthworm species hitherto known from Kerala, a constituent of the Western Ghats biodiversity hotspot in India, is presented. In total, 88 species and subspecies are recorded, of which 55 are Kerala endemics, 9 near endemics, 14 exotics and 10 native peregrines. These belong to 26 genera and 9 families. The checklist includes the literature citation to the original description, type locality, any significant subsequent generic placements, and the district distributional pattern for each species/ subspecies.

  17. First report of Amynthas carnosus (Goto & Hatai, 1899) (Oligochaeta: Megascolecidae) in the Western Hemisphere.

    Science.gov (United States)

    Carrera-Martínez, Roberto; Snyder, Bruce A

    2016-05-16

    The earthworm fauna of North America is still greatly unknown, with undescribed native species and new records of invasive species continually being discovered. The most recent checklists are difficult to reconcile, since they vary in their geographic coverage and taxonomy. Reynolds & Wetzel (2012) state that North America (including all of Mexico, some of the Caribbean, and Hawaii) is home for 256 species of earthworms, from which 188 are considered native or endemic and 68 are peregrine, exotic, and invasive species. Blakemore (2008) listed North America north of Mexico as having 183 earthworm species, of which 59 species are exotic. One Megascolecidae genus, Amynthas, is mostly located in the warmer subtropical and tropical regions of the world, with a few species that are able to survive the winter in the temperate zones of North America (Edwards & Bohlen 1995; Görres et al. 2014). Here we report for the first time the occurrence of Amynthas carnosus (Goto & Hatai, 1899) in the United States. To our knowledge, this is not only the first report of A. carnosus in North America, but also its first report in the Western Hemisphere. The description below is intended to place our specimens in the correct taxon while avoiding future confusion with similar species, without making changes to the existing classification system.

  18. Introducing of the methods of pollutants detecting and species used as experiment organisms in testing laboratories (ro

    Directory of Open Access Journals (Sweden)

    Romeo T. Cristina

    2012-12-01

    Full Text Available Zebrafish are vertebrate animals often used in research for wastewaters, environment chemicals, cancer and diabetes drugs due to their speed and ease for handling and obtaining test results. Organisms capacity to detect and avoid contaminated soils reveals soils stressor potential and has an ecological relevance indepted with its direct relationship to soil biodiversity and it’s quality as a habitat for the organism. Soil pollution tests were accomplished on arthropods (Collembola, earthworms, oligochaete worms (Enchytraeidae, this being behavior modification tests, observing which species avoids contaminated soils and if response intensity depends on contamination degree. Using Daphnia sp. for testing it’s possible because of their sensibility to an amount of aquatic pollutants and also for their small sizes involving a use of small volumes of test substance and water for dilution.

  19. Identifying earthworms (Oligochaeta, Megadrili of the Southern Kuril Islands using DNA barcodes

    Directory of Open Access Journals (Sweden)

    Shekhovtsov, S. V.

    2018-01-01

    Full Text Available he Kuril Islands are a volcanic archipelago located between Hokkaido and Kamchatka. In this study we investigated earthworm fauna of three of the Southern Kuril Islands, Kunashir, Shikotan, and Yuri, using both morphological analysis and DNA barcoding. Our results highlight the potential of DNA barcoding for studying earthworm fauna: while previous studies reported only six earthworm species and subspecies on the Southern Kurils, we detected 15 genetic clusters. Six of them correspond to European cosmopolites; six, to Asian species, and three, to unidentified species. While no European earthworms were found on Yuri that is uninhabited since WWII, they dominated on larger and inhabited Kunashir and Shikotan, suggesting that they are recent invaders. Of the six Asian species, five had cox1 sequences identical or very closely related to published sequences from the mainland or the Japanese islands and thus are recent invaders.

  20. Radiological effects on populations of Oligochaeta in the Chernobyl contaminated zone

    Energy Technology Data Exchange (ETDEWEB)

    Tsytsugina, V.G.; Polikarpov, G.G. E-mail: ggp@iur.sebastopol.ua

    2003-07-01

    A detailed investigation of 3 populations of Oligochaete species (Dero obtusa, Nais pseudobtusa and Nais pardalis) has been carried out in contaminated lake of the close-in Chernobyl zone and in a control lake. Hydrochemical indices and concentrations of heavy metals, chloro-organi compounds and {sup 90}Sr in bottom sediments have been measured. Absorbed doses were calculated on the basis of the results of radiochemical analysis an assessed directly with thermoluminescent dosimeters (TLD). Stimulation of paratomous division (asexual reproduction) was found in one species of worm (D. obtusa), and activation of sexual reproduction in the two other specie studied. An increase in the amount of cytogenetic damage in the somatic cells of worms from the contaminated lake was found and an attempt was made to assess the relative contributions of radiation and chemical exposure on the basis of analyses of inter-cellular aberration distributions and the types of chromosome aberrations observed in the cells.

  1. New earthworms of the Amynthas morrisi-group (Oligochaeta, Megascolecidae) from Hainan Island, China.

    Science.gov (United States)

    Sun, Jing; Jiang, Ji-Bao; Zhao, Qi; Qiu, Jiang-Ping

    2015-12-16

    This paper describes two new species of earthworms belonging to the Amynthas morrisi-group from Hainan Island, China: Amynthas zonarius sp. nov. and Amynthas wuzhimontis sp. nov. Both have two pairs of spermathecal pores in 5/6-6/7, and simple intestinal caeca. Amynthas zonarius sp. nov. has a pad-like male porophore, with flat-topped tubercle surrounded by 5 skin folds distal half of the spermathecal diverticulum dilated into band-shaped seminal chamber. Amynthas wuzhimontis sp. nov. has a seminal chamber constricted into moniliform subchambers and a glandular pad-like elliptical male pore porophore surrounded by the tumid area. Partial COI sequences of the holotypes of the two new species have been submitted to GenBank as DNA barcodes to enable molecular species identification.

  2. Checklist of earthworms (Oligochaeta: Lumbricidae) from Montenegro: Diversity and biogeographical review.

    Science.gov (United States)

    Stojanović, Mirjana; Milutinović, Tanja

    2013-01-01

    A checklist of the lumbricid earthworms in Montenegro is presented. Comprehensive information on the distribution and habitats of all earthworms is given in order to establish the definitive list of known taxa from Montenegro. The complete list of earthworm taxa of Montenegro comprises 40 species and subspecies, belonging to 12 genera of the family Lumbricidae. The list underlines the diversity of earthworms and provides a general overview of their distribution and zoogeographical type. Our study shows that the degree of endemism is comparatively high, exceeding 20%. Summing up the endemics and the Balkanic species, 42.5% of the total lumbricid fauna shows an autochthonous character.

  3. The life-cycle of the compost worm (Oligochaeta) | Venter | African ...

    African Journals Online (AJOL)

    To determine the full potential of the compost worm Eisenia fetida as waste processor and as source of protein, the life-cycle of this species had to be studied thoroughly. The development, growth and reproduction of Eisenia fetida were studied on cattle manure under favourable conditions of moisture, temperature and ...

  4. Hibernian reports of a new Franco-Iberian worm (Oligochaeta: Megadrilacea: Lumbricidae

    Directory of Open Access Journals (Sweden)

    Blakemore, R.J.

    2012-12-01

    Full Text Available A continental European earthworm, Kenleenus armadas sp. nov., is newly described from an introduction to a farm in Dublin, Ireland. Previously recognized as Aquitainian Prosellodrilus amplisetosus Bouché, 1972, the morphology and molecular characteristics rather indicate it as a taxon new to science. Its description has required revision of all prosellodrilid genera including Algerian subgenus Maghrebiella Baha & Bera, 2001 that is a permanently invalid homonym, here replaced with Cadanera nom. nov. A revised checklist is appended that holds Allolobophora festae Rosa, 1892 as a species incertae sedis pending review of the Cadanera type. This report brings the total earthworms known from Britain & Ireland to 72 species, including a new record of cosmopolitan Pithemera bicincta (Perrier, 1875 (Megascolecidae from Dublin’s Botanic Gardens

  5. Contribution to the knowledge for distribution of Criodrilus lacuum (Annelida: Oligochaeta: Criodrilidae from Bulgaria

    Directory of Open Access Journals (Sweden)

    Hristo Valchovski

    2013-10-01

    Full Text Available All known records of Criodrilidae earthworms in the country were presented. The current knowledge for distribution of family Criodrilidae in Bulgaria was summarized. In this paper we report new locality of Criodrilus lacuum Hoffmeister, 1845. Surprisingly this species was found in one of the parks in Sofia Town. New data confirm its presence in Sofia Plane. Also information about ecology, habitat type locality and short description of Criodrilus lacuum was provided.

  6. Appearances can be deceptive: different diversification patterns within a group of Mediterranean earthworms (Oligochaeta, Hormogastridae).

    Science.gov (United States)

    Novo, Marta; Almodóvar, Ana; Fernández, Rosa; Trigo, Dolores; Díaz-Cosín, Darío J; Giribet, Gonzalo

    2012-08-01

    Many recent studies on invertebrates have shown how morphology not always captures the true diversity of taxa, with cryptic speciation often being discussed in this context. Here, we show how diversification patterns can be very different in two clades of closely related earthworms in the genus Hormogaster stressing the risk of using nonspecific substitution rate values across taxa. On the one hand, the Hormogaster elisae species complex, endemic to the central Iberian Peninsula, shows morphological stasis. On the other hand, a clade of Hormogaster from the NE Iberian Peninsula shows an enormous morphological variability, with 15 described morphospecies. The H. elisae complex, however, evolves faster genetically, and this could be explained by the harsher environmental conditions to which it is confined-as detected in this study, that is, sandier and slightly poorer soils with lower pH values than those of the other species in the family. These extreme conditions could be at the same time limiting morphological evolution and thus be responsible for the observed morphological stasis in this clade. Contrarily, Hormogaster species from the NE Iberian Peninsula, although still inhabiting harsher milieu than other earthworm groups, have had the opportunity to evolve into a greater morphological disparity. An attempt to delimit species within this group following the recently proposed general mixed Yule-coalescent method showed a higher number of entities than expected under the morphospecies concept, most probably due to the low vagility of these animals, which considerably limits gene flow between distant conspecific populations, but also because of the decoupling between morphological and genetic evolution in the H. elisae complex. © 2012 Blackwell Publishing Ltd.

  7. Pheromone evolution, reproductive genes, and comparative transcriptomics in mediterranean earthworms (annelida, oligochaeta, hormogastridae).

    Science.gov (United States)

    Novo, Marta; Riesgo, Ana; Fernández-Guerra, Antoni; Giribet, Gonzalo

    2013-07-01

    Animals inhabiting cryptic environments are often subjected to morphological stasis due to the lack of obvious agents driving selection, and hence chemical cues may be important drivers of sexual selection and individual recognition. Here, we provide a comparative analysis of de novo-assembled transcriptomes in two Mediterranean earthworm species with the objective to detect pheromone proteins and other reproductive genes that could be involved in cryptic speciation processes, as recently characterized in other earthworm species. cDNA libraries of unspecific tissue of Hormogaster samnitica and three different tissues of H. elisae were sequenced in an Illumina Genome Analyzer II or Hi-Seq. Two pheromones, Attractin and Temptin were detected in all tissue samples and both species. Attractin resulted in a reliable marker for phylogenetic inference. Temptin contained multiple paralogs and was slightly overexpressed in the digestive tissue, suggesting that these pheromones could be released with the casts. Genes involved in sexual determination and fertilization were highly expressed in reproductive tissue. This is thus the first detailed analysis of the molecular machinery of sexual reproduction in earthworms.

  8. Phylogenetic analysis of New Zealand earthworms (Oligochaeta: Megascolecidae) reveals ancient clades and cryptic taxonomic diversity.

    Science.gov (United States)

    Buckley, Thomas R; James, Sam; Allwood, Julia; Bartlam, Scott; Howitt, Robyn; Prada, Diana

    2011-01-01

    We have constructed the first ever phylogeny for the New Zealand earthworm fauna (Megascolecinae and Acanthodrilinae) including representatives from other major continental regions. Bayesian and maximum likelihood phylogenetic trees were constructed from 427 base pairs from the mitochondrial large subunit (16S) rRNA gene and 661 base pairs from the nuclear large subunit (28S) rRNA gene. Within the Acanthodrilinae we were able to identify a number of well-supported clades that were restricted to continental landmasses. Estimates of nodal support for these major clades were generally high, but relationships among clades were poorly resolved. The phylogenetic analyses revealed several independent lineages in New Zealand, some of which had a comparable phylogenetic depth to monophyletic groups sampled from Madagascar, Africa, North America and Australia. These results are consistent with at least some of these clades having inhabited New Zealand since rifting from Gondwana in the Late Cretaceous. Within the New Zealand Acanthodrilinae, major clades tended to be restricted to specific regions of New Zealand, with the central North Island and Cook Strait representing major biogeographic boundaries. Our field surveys of New Zealand and subsequent identification has also revealed extensive cryptic taxonomic diversity with approximately 48 new species sampled in addition to the 199 species recognized by previous authors. Our results indicate that further survey and taxonomic work is required to establish a foundation for future biogeographic and ecological research on this vitally important component of the New Zealand biota. Copyright © 2010 Elsevier Inc. All rights reserved.

  9. Influence of Soil Organic Matter Content on Abundance and Biomass of Earthworm (Oligochaeta: Lumbricidae Populations

    Directory of Open Access Journals (Sweden)

    Hristo Valchovski

    2016-06-01

    Full Text Available The current study explores the influence of soil organic matter content on abundance and biomass of earthworm communities. The observation was carried out on three type of soils: PellicVertisols (very fine texture, Cromi-Vertic Luvisols (fine texture and Calcaric Fluvisols (mediumtexture from the Balkan Peninsula (Bulgaria. The field experiment was provided on uncultivatedplots. In the studied area earthworm fauna comprises of four species: Aporrectodea rosea,Aporrectodea caliginosa, Lumbricus terrestris and Octolasion lacteum. We found peregrine lumbricidtaxa, which are widely distributed in European soils. Our study demonstrated that soil organicmatter has a positive effect on lumbricid populations. It was revealed that augmentation of soilorganic matter favours characteristics of earthworm communities. The soil organic matter contentand earthworm abundance are in strong positive correlation (r > 0.981. The same relationship wasrevealed between the biomass of lumbricid fauna and amount of soil organic matter (r > 0.987. Insum, the soil organic matter could be used as an indicator for earthworm communities inuncultivated soils.

  10. Does the different mowing regime affect soil biological activity and floristic composition of thermophilous Pieniny meadow?

    Science.gov (United States)

    Józefowska, Agnieszka; Zaleski, Tomasz; Zarzycki, Jan

    2016-04-01

    The study area was located in the Pieniny National Park in the Carpathian Mountain (Southern Poland). About 30% of Park's area is covered by meadows. The climax stage of this area is forest. Therefore extensive use is indispensable action to keep semi-natural grassland such as termophilous Pieniny meadows, which are characterized by a very high biodiversity. The purpose of this research was to answer the question, how the different way of mowing: traditional scything (H), and mechanical mowing (M) or abandonment of mowing (N) effect on the biological activity of soil. Soil biological activity has been expressed by microbial and soil fauna activity. Microbial activity was described directly by count of microorganisms and indirectly by enzymatic activity (dehydrogenase - DHA) and the microbial biomass carbon content (MBC). Enchytraeidae and Lumbricidae were chosen as representatives of soil fauna. Density and species diversity of this Oligochaeta was determined. Samples were collected twice in June (before mowing) and in September (after mowing). Basic soil properties, such as pH value, organic carbon and nitrogen content, moisture and temperature, were determined. Mean count of vegetative bacteria forms, fungi and Actinobacteria was higher in H than M and N. Amount of bacteria connected with nitrification and denitrification process and Clostridium pasteurianum was the highest in soil where mowing was discontinued 11 years ago. The microbial activity measured indirectly by MBC and DHA indicated that the M had the highest activity. The soil biological activity in second term of sampling had generally higher activity than soil collected in June. That was probably connected with highest organic carbon content in soil resulting from mowing and the end of growing season. Higher earthworm density was in mowing soil (220 and 208 individuals m-2 in H and M respectively) compare to non-mowing one (77 ind. m-2). The density of Enchytraeidae was inversely, the higher density

  11. earthworm Eisenia foetida (Oligochaeta)

    African Journals Online (AJOL)

    Influence of temperature on the reproduction of the earthworm Eisenia foetida ... feeding supplements for poultry, fish and other livestock ... of earthworm reproduction. ..... invertebrate populations in artificial soil made of sewage sludge and.

  12. of Perionyx excavatus (Oligochaeta)

    African Journals Online (AJOL)

    reproductive organs by drying critically in liquid carbon diox- .... probably indicates active involvement ofthe cilia in the trans- ... (PD) as well as the associated male openings (arrow); bar = 70 Ilrn. (D) The two types of vesicles. granular (I) and electron-lucid (2) ... gland probably act as nutrients for the spenn as well as a.

  13. Exposure to extremely low frequency (50 Hz electromagnetic field changes the survival rate and morphometric characteristics of neurosecretory neurons of the earthworm Eisenia foetida (Oligochaeta under illumination stress

    Directory of Open Access Journals (Sweden)

    Banovački Zorana

    2013-01-01

    Full Text Available An in vivo model was set up to establish the behavioral stress response (rate of survival and morphometric characteristics of A1 protocerebral neurosecretory neurons (cell size of Eisenia foetida (Oligochaeta as a result of the synergetic effect of extremely low frequency electromagnetic fields (ELF-EMF - 50 Hz, 50 μT, 17 V/m and 50 Hz, 150 μT, 17 V/m, respectively and constant illumination (420-450 lux. If combined, these two stressors significantly (p<0.05 increased the survival rate of E. foetida in the 150 μT-exposed animals, because of delayed caudal autotomy reflex, an indicator of stress response. In addition, morphometric analysis indicated that there were changes in the protocerebral neurosecretory cells after exposure to the ELF-EMF. The present data support the view that short-term ELF-EMF exposure in “windows” of intensity is likely to stimulate the immune and neuroendocrine response of E. foetida.

  14. Oligochaeta (Annelida, Clitellata in the Aquatic Macrophytes in Dam of Ribeirão of Anhumas Screamers (Américo Brasiliense-Sp

    Directory of Open Access Journals (Sweden)

    Nathalie Aparecida De Oliveira Sanches

    2014-06-01

    Full Text Available Macrophytes have different morphological structural complexities, offering to animals the availability of various niches. These plants are also an important substrate for the development of periphyton, which has a high nutritional value and is one of the main foods of aquatic invertebrates, mainly Naididae. This study aimed at examinining the diversity of Oligochaeta community in macrophytes belonging to genus Egeria sp. and Salvinia sp., in lagoons of Ribeirão das Anhumas dam. These macrophytes have distinct three-dimensional characteristics and different habits, being Egeria fixed submerged and Salvinia free floating. The collections of macrophytes were carried out between the months of August 2012 and April 2013. Samples of 100g (wet weight of each genus were taken from plant biomass and the removal of the plants from the environment was made with the aid of a sieve with 0.21 mm mesh. Considering the two macrophytes analyzed, Egeria sp. was the one that presented greater diversity, richness and abundance in relation to Salvinia sp. These results demonstrate that macrophytes are important for the establishment of oligochaetes, mainly providing protection and food, and possibly the morphology and habit of the plants are the most influential factors in the association of oligofauna with these plants.

  15. Effects of Bacillus thuringiensis (Bt) corn on soil Folsomia fimetaria, Folsomia candida (Collembola), Hypoaspis aculeifer (Acarina) and Enchytraeus crypticus (Oligochaeta)

    DEFF Research Database (Denmark)

    Ke, X.; Krogh, P. H.

    The effects of the Cry1Ab toxin from Bacillus thuringiensis (corn variety Cascade Bt MON810 and DeKalb variety 618 Bt) were studied on survival and reproduction of the soil collembolan Folsomia fimetaria, Folsomia candida, the collembolan predator mite Hypoaspis aculeifer and enchytraeids....... There was a weak significant reduction by 30% on the reproduction of F. fimetaria fed Bt corn in Petri dishes for 21 days. Likewise there was a weak significant reduction by 40% of the reproduction of H. aculeifer by Bt corn in amounts corresponding to 20 g plant material kg-1 soil in the two species soil......-litter microcosm systems. There were no effects of Bt corn materials on the reproduction of F. fimetaria and E. crypticus in the single species soil-litter microcosms. No effects of Bt corn materials on mortality of all the 4 species were observed in all treatments. The tendency of effects of the Bt corn...

  16. Understanding the biogeography of a group of earthworms in the Mediterranean basin--the phylogenetic puzzle of Hormogastridae (Clitellata: Oligochaeta).

    Science.gov (United States)

    Novo, Marta; Almodóvar, Ana; Fernández, Rosa; Giribet, Gonzalo; Díaz Cosín, Darío J

    2011-10-01

    Traditional earthworm taxonomy is hindered due to their anatomical simplicity and the plasticity of the characteristics often used for diagnosing species. Making phylogenetic inferences based on these characters is more than difficult. In this study we use molecular tools to unravel the phylogeny of the clitellate family Hormogastridae. The family includes species of large to mid-sized earthworms distributed almost exclusively in the western Mediterranean region where they play an important ecological role. We analyzed individuals from 46 locations spanning the Iberian Peninsula to Corsica and Sardinia, representing the four described genera in the family and 20 species. Molecular markers include mitochondrial regions of the cytochrome c oxidase subunit I gene (COI), 16S rRNA and tRNAs for Leu, Ala, and Ser, two nuclear ribosomal genes (nearly complete 18S rRNA and a fragment of 28S rRNA) and two nuclear protein-encoding genes (histones H3 and H4). Analyses of the data using different approaches corroborates monophyly of Hormogastridae, but the genus Hormogaster is paraphyletic and Hormogaster pretiosa appears polyphyletic, stressing the need for taxonomic revisionary work in the family. The genus Vignysa could represent an early offshoot in the family, although the relationships with other genera are uncertain. The genus Hemigastrodrilus is related to the Hormogaster elisae complex and both are found in the Atlantic drainage of the Iberian Peninsula and France. From a biogeographic perspective Corsica and Sardinia include members of two separate hormogastrid lineages. The species located in Corsica and Northern Sardinia are related to Vignysa, whereas Hormogaster pretiosa pretiosa, from Southern Sardinia, is closely related to the Hormogaster species from the NE Iberian Peninsula. A molecular dating of the tree using the separation of the Sardinian microplate as a calibration point (at 33 MY) and assuming a model of vicariance indicates that the diversification of

  17. Examination of digestive enzyme distribution in gut tract and functions of intestinal caecum, in megascolecid earthworms (Oligochaeta: Megascolecidae) in Japan.

    Science.gov (United States)

    Nozaki, Mana; Ito, Katsutoshi; Miura, Chiemi; Miura, Takeshi

    2013-09-01

    Earthworms ingest various materials in addition to food items, such as soil particles. Most earthworms of the family Megascolecidae, a dominant family in Japan, have intestinal caeca connected directly to the intestinal tract. The function of the caeca has not been demonstrated, although it is thought to be associated with digestion. We investigated the activity of the digestive enzymes amylase, phosphatase, cellulase, and protease in different regions of the gut, including the intestinal caeca, in three species of megascolecid earthworms, Pheretima heteropoda, Pheretima hilgendorfi, and Pheretima sieboldi. Activities of several enzymes were high in the intestinal caeca; in particular, protease activity was higher in the caeca than that in the anterior gut, foregut, midgut, and hindgut in all three species. Moreover, the ratio of enzyme activities in the intestinal caeca to whole-gut tended to be higher in manicate intestinal caeca than in simple intestinal caeca. These results suggest that the digestive system of earthworms relies on the intestinal caeca.

  18. Observation on Nematocystis kailashi sp. nov. (Apicomplexa: Eugregarinida) from an Indian earthworm Glyphidrilus tuberosus Stephenson (Annelida: Oligochaeta)

    Science.gov (United States)

    Mallik, Partha; Bandyopadhyay, Prabir K

    Surveys on aseptate gregarines in earthworm hosts in different districts of West Bengal state of India revealed the existence of one new species of aseptate gregarine of the genus Nematocystis Hesse, 1909 have been identified from the seminal vesicles of the earthworm, Glyphidrilus tuberosus Stephenson, 1916 in the district of Purba Midnapur, West Bengal of India. Gamonts of the organism are very much elongated, cylindrical, nematoid and without mucron. The terminal end adjacent to the nucleus rounded and the distal end pointed. The gamonts measure 846.45-1031.13 (931.86±70.48) μm in length and 18.40-20.45 (19.43±1.05) μm in width. Nucleus elongated or depressed elliptoid, measures 53.17-63.39 (60.33±3.28) μm in length and 13.29-16.36 (14.15±0.89) μm in width. The gametocysts are slightly ovoid, measuring 110.43-120.65 (114.31±3.44) μm in diameter. Oocysts navicular and measure 9.24-10.39 (9.78±0.40) μm×5.77-6.16 (6.04±0.18) μm. Based on critical analysis and comparison with earlier reported species, the species under discussion established as new one.

  19. The sublethal effects of the organochlorines dieldrin and lindane on growth and reproduction of Eudrilus eugeniae and Eisenia fetida (Oligochaeta

    Directory of Open Access Journals (Sweden)

    Editorial Office

    1994-07-01

    Full Text Available Experimental exposure of the earthworm species Eudrilus eugeniae to organochlorines showed that dieldrin causes damage to sperm ultrastructure when viewed electronmicroscopically. Worms containing concentrations of 7,27 mg/kg dieldrin and higher showed more than 10% sperm damage. Exposure of Eisenia fetida to sublethal concentrations of lindane did not result in sperm damage but demonstrated an increase in growth and reproductive activity. It is argued that quantification of sperm damage and correlation with pesticide concentration could provide a useful tool for evaluating environmental quality. Furthermore, the effects of sublethal concentrations of pesticides that manifest themselves in increased growth and reproductive activity could affect ecological balances.

  20. Influence of Chironomus riparius (Diptera, Chironomidae) and Tubifex tubifex (Annelida, Oligochaeta) on oxygen uptake by sediments. Consequences of uranium contamination

    Energy Technology Data Exchange (ETDEWEB)

    Lagauzere, S. [Laboratoire de Radioecologie et d' Ecotoxicologie, Institut de Radioprotection et de Surete Nucleaire (IRSN), DEI/SECRE/LRE, Cadarache 186, BP 3, F-13115 Cedex, Saint Paul Lez Durance (France)], E-mail: lagauzere@gmail.com; Pischedda, L.; Cuny, P. [Laboratoire de Microbiologie, Geochimie et Ecologie Marines, UMR 6117 CNRS/COM/Universite de la Mediterranee, Campus de Luminy, Case 901, F-13288 Cedex 09, Marseille (France); Gilbert, F. [EcoLab, Laboratoire d' Ecologie Fonctionnelle, UMR 5245 CNRS/INP/Universite Paul Sabatier, 29 Rue Jeanne Marvig, F-31055 Cedex 4, Toulouse (France); Stora, G. [Laboratoire de Microbiologie, Geochimie et Ecologie Marines, UMR 6117 CNRS/COM/Universite de la Mediterranee, Campus de Luminy, Case 901, F-13288 Cedex 09, Marseille (France); Bonzom, J.-M. [Laboratoire de Radioecologie et d' Ecotoxicologie, Institut de Radioprotection et de Surete Nucleaire (IRSN), DEI/SECRE/LRE, Cadarache 186, BP 3, F-13115 Cedex, Saint Paul Lez Durance (France)

    2009-04-15

    The diffusive oxygen uptake (DOU) of sediments inhabited by Chironomus riparius and Tubifex tubifex was investigated using a planar oxygen optode device, and complemented by measurements of bioturbation activity. Additional experiments were performed within contaminated sediments to assess the impact of uranium on these processes. After 72 h, the two invertebrate species significantly increased the DOU of sediments (13-14%), and no temporal variation occurred afterwards. Within contaminated sediments, it was already 24% higher before the introduction of the organisms, suggesting that uranium modified the sediment biogeochemistry. Although the two species firstly reacted by avoidance of contaminated sediment, they finally colonized it. Their bioturbation activity was reduced but, for T. tubifex, it remained sufficient to induce a release of uranium to the water column and an increase of the DOU (53%). These results highlight the necessity of further investigations to take into account the interactions between bioturbation, microbial metabolism and pollutants. - This study highlights the ecological importance of bioturbation in metal-contaminated sediments.

  1. Influence of Chironomus riparius (Diptera, Chironomidae) and Tubifex tubifex (Annelida, Oligochaeta) on oxygen uptake by sediments. Consequences of uranium contamination

    International Nuclear Information System (INIS)

    Lagauzere, S.; Pischedda, L.; Cuny, P.; Gilbert, F.; Stora, G.; Bonzom, J.-M.

    2009-01-01

    The diffusive oxygen uptake (DOU) of sediments inhabited by Chironomus riparius and Tubifex tubifex was investigated using a planar oxygen optode device, and complemented by measurements of bioturbation activity. Additional experiments were performed within contaminated sediments to assess the impact of uranium on these processes. After 72 h, the two invertebrate species significantly increased the DOU of sediments (13-14%), and no temporal variation occurred afterwards. Within contaminated sediments, it was already 24% higher before the introduction of the organisms, suggesting that uranium modified the sediment biogeochemistry. Although the two species firstly reacted by avoidance of contaminated sediment, they finally colonized it. Their bioturbation activity was reduced but, for T. tubifex, it remained sufficient to induce a release of uranium to the water column and an increase of the DOU (53%). These results highlight the necessity of further investigations to take into account the interactions between bioturbation, microbial metabolism and pollutants. - This study highlights the ecological importance of bioturbation in metal-contaminated sediments

  2. The Naididae (Oligochaeta) of Surinam

    NARCIS (Netherlands)

    Harman, W.J.

    1974-01-01

    CONTENTS Introduction................... 3 List of localities................. 4 Systematics................... 5 Chaetogaster.................. 5 Allonais................... 7 Slavina................... 8 Haemonais .................. 9 Stephensoniana.................. 11 Nais.................... 12

  3. Using aquatic macroinvertebrate species traits to build test batteries for sediment toxicity assessment: accounting for the diversity of potential biological responses to toxicants.

    Science.gov (United States)

    Ducrot, Virginie; Usseglio-Polatera, Philippe; Péry, T Alexandre R R; Mouthon, Jacques; Lafont, Michel; Roger, Marie-Claude; Garric, Jeanne; Férard, Jean-François

    2005-09-01

    An original species-selection method for the building of test batteries is presented. This method is based on the statistical analysis of the biological and ecological trait patterns of species. It has been applied to build a macroinvertebrate test battery for the assessment of sediment toxicity, which efficiently describes the diversity of benthic macroinvertebrate biological responses to toxicants in a large European lowland river. First, 109 potential representatives of benthic communities of European lowland rivers were selected from a list of 479 taxa, considering 11 biological traits accounting for the main routes of exposure to a sediment-bound toxicant and eight ecological traits providing an adequate description of habitat characteristics used by the taxa. Second, their biological and ecological trait patterns were compared using coinertia analysis. This comparison allowed the clustering of taxa into groups of organisms that exhibited similar life-history characteristics, physiological and behavioral features, and similar habitat use. Groups exhibited various sizes (7-35 taxa), taxonomic compositions, and biological and ecological features. Main differences among group characteristics concerned morphology, substrate preferendum and habitat utilization, nutritional features, maximal size, and life-history strategy. Third, the best representatives of the mean biological and ecological characteristics of each group were included in the test battery. The final selection was composed of Chironomus riparius (Insecta: Diptera), Branchiura sowerbyi (Oligochaeta: Tubificidae), Lumbriculus variegatus (Oligochaeta: Lumbriculidae), Valvata piscinalis (Gastropoda: Valvatidae), and Sericostoma personatum (Trichoptera: Sericostomatidae). This approach permitted the biological and ecological variety of the battery to be maximized. Because biological and ecological traits of taxa determine species sensitivity, such maximization should permit the battery to better account

  4. Coprophilous Streptomycetes and Fungi - Food Sources for Enchytraeid Worms (Enchytraeidae)

    Czech Academy of Sciences Publication Activity Database

    Krištůfek, Václav; Nováková, Alena; Pižl, Václav

    2001-01-01

    Roč. 46, č. 6 (2001), s. 555-558 ISSN 0015-5632 R&D Projects: GA AV ČR IAA6066001 Institutional research plan: CEZ:AV0Z6066911 Keywords : food selection * vermicomposting * Eisenia and rei Subject RIV: EH - Ecology, Behaviour Impact factor: 0.776, year: 2001

  5. Two new Cambodian semi-aquatic earthworms in the genus Glyphidrilus Horst, 1889 (Oligochaeta, Almidae), based on morphological and molecular data.

    Science.gov (United States)

    Jirapatrasilp, Parin; Prasankok, Pongpun; Sutcharit, Chirasak; Chanabun, Ratmanee; Panha, Somsak

    2016-11-10

    Combining morphological and molecular data is a powerful approach to support the discovery of new species. Here, two new species of the semi-aquatic earthworm genus Glyphidrilus, G. jamiesoni sp. n. and G. kralanhensis sp. n., are described from the Mekong Basin in Cambodia. They are morphologically distinguished by the respective locations of wings and spermathecae; furthermore, G. kralanhensis sp. n. has three pairs of ovaries, probably an autapomorphic trait. In addition, two mitochondrial gene fragments (COI and 16s rRNA) were sequenced of types of the new species and of five further Glyphidrilus species described recently from the Mekong basin in Thailand and Laos. They revealed a high level of genetic divergence of the new species compared to the other earthworm taxa. The evolutionary relationships among the Mekong Glyphidrilus members is discussed with reference to the recent paleogeography of the Mekong River drainage.

  6. Endangered Species

    Science.gov (United States)

    EPA's Endangered Species Protection Program helps promote recovery of listed species. The ESPP determines if pesticide use in a geographic area may affect any listed species. Find needed limits on pesticide use in Endangered Species Protection Bulletins.

  7. Die Regenwurmfauna (Oligochaeta: Lumbricidae der Aue der Großen Kokel als Abhängige der Böden im Flusseinzugsgebiet und der Auengradienten

    Directory of Open Access Journals (Sweden)

    Höser, N.

    2011-06-01

    Full Text Available In five floodplain transects along the course of the river Târnava Mare in Rumania, 17 earthworm species werecounted. The species spectrum of the earthworm fauna of the studied floodplains is dependent on the provenance of thefloodplain sediments. On the basis of this provenance, the fauna of three groups of soil localities on the floodplain aredifferentiated: in the upper reaches of the river, the fauna of the floodplain soils derived from brown forest soils and podzolicsoils (near Sub Cetate; on the eastern side of the middle reaches, the fauna of the soils mainly derived from gray-brown podzolicsoils (near Porumbenii Mari, Hoghilag; and on the western side of the middle reaches and the lower reaches, the fauna of thesoils principally derived from planosols (near Alma, Valea Lungă. Proctodrilus tuberculatus occurs in the floodplain sedimentspredominantly derived from the gray-brown podzolic soils, and in those parts of the floodplain derived from planosols P.opisthoductus and Aporrectodea georgii are found. Ap. georgii and Allolobophora leoni are mostly mutually exclusive in thefloodplain transect, were they are apparently indicator species of sediment deposition close to the river and/or the effect of highwater on the soil chemistry. P. tuberculatus and P. opisthoductus occur as vicarious species in the soil profile of the area wheretheir distribution overlaps. Three soil factors that are significant in determining earthworm distribution are emphasized:lessivage, or translocation of clay; the pervection of colloidal organic matter (humus into the soil, and the texture of the soillayers resulting from sedimentation. An additional record of the new species P. thaleri is given.

  8. Identifying the Achilles heel of multi-host pathogens: the concept of keystone ‘host’ species illustrated by Mycobacterium ulcerans transmission

    International Nuclear Information System (INIS)

    Roche, Benjamin; Eric Benbow, M; Merritt, Richard; Kimbirauskas, Ryan; McIntosh, Mollie; Small, Pamela L C; Williamson, Heather; Guégan, Jean-François

    2013-01-01

    Pathogens that use multiple host species are an increasing public health issue due to their complex transmission, which makes them difficult to mitigate. Here, we explore the possibility of using networks of ecological interactions among potential host species to identify the particular disease-source species to target to break down transmission of such pathogens. We fit a mathematical model on prevalence data of Mycobacterium ulcerans in western Africa and we show that removing the most abundant taxa for this category of pathogen is not an optimal strategy to decrease the transmission of the mycobacterium within aquatic ecosystems. On the contrary, we reveal that the removal of some taxa, especially Oligochaeta worms, can clearly reduce rates of pathogen transmission, and these should be considered as keystone organisms for its transmission because they lead to a substantial reduction in pathogen prevalence regardless of the network topology. Besides their potential application for the understanding of M. ulcerans ecology, we discuss how networks of species interactions can modulate transmission of multi-host pathogens. (letter)

  9. Chaetogaster limnaei (annelida: oligochaeta) as a parasite of the zebra mussel Dreissena polymorpha, and the quagga mussel Dreissena bugensis (mollusca: bivalvia).

    Science.gov (United States)

    Conn, D B; Ricciardi, A; Babapulle, M N; Klein, K A; Rosen, D A

    1996-01-01

    Dreissenid mussels, Dreissena polymorpha and D. bugensis, were found to be infected by the naidid oligochaete Chaetogaster limnaei at four sites in the St. Lawrence River. This is the first report of this species infecting dreissenids anywhere in the world. Most worms inhabited the mantle cavity, where they caused erosion of the mantle and gill epithelia as determined by histopathological examination. Others penetrated various tissues; one had invaded the ovary and was feeding on oocytes and ovarian tissues. Of 606 mussels examined, 166 (27.4%) harbored at least 1 C. limnaei. The prevalence varied between 1% and 80%, depending on the collection site and date. The worms were slightly but significantly more prevalent in D. bugensis than in D. polymorpha. The intensity ranged from 1 to 18 worms per infected host. Variations in prevalence and intensity were not related to the size or sex of the host, but the data did suggest some seasonality.

  10. Structural and functional responses of the oligochaete and aeolosomatid assemblage in lowland streams: a one-way-pollution-modelled ecosystem

    Directory of Open Access Journals (Sweden)

    Maria V. López van Oosterom

    2015-03-01

    Full Text Available We investigated the responses of the assemblage of Oligochaeta and Aeolosomatidae to organic pollution; comparing taxonomic richness, diversity, abundance, and diet of the individuals inhabiting two lowland streams with different degrees of anthropic impact (the Rodríguez and the Carnaval belonging to the Río de la Plata basin, Argentina. The physicochemical parameters in the Rodríguez Stream indicated a strong deterioration of the water quality compared to that of the Carnaval. A canonical-correlation analysis indicated that the Tubificinae, Megadrili, Enchytraeidae, and Rhyacodrilinae were more closely associated with the Rodríguez Stream; whereas the Naidinae, Pristininae, and Opystocystidae were more highly represented in the Carnaval. The diversity and taxonomic richness in the Rodríguez Stream exhibited significant differences from those of the Carnaval (P<0.001, but the abundance was not different between the two sites. Schoener’s index revealed the higher degree of dietary overlap of the two streams because all the species analysed consumed a high proportion of detritus, especially the organisms in the Rodríguez. In the Carnaval Stream a higher number of alimentary items were consumed, and mainly by the Naidinae. This difference, probably reflecting the greater availability of this resource at sites impacted by organic pollution, underscores the fundamental role of oligochaetes in the food webs of aquatic ecosystems. The combined use of structural and functional parameters enables a more comprehensive view of how these lotic systems function and as such provides information that will serve to design tools for the management of such temperate environments.

  11. SALMONELLA SPECIES

    African Journals Online (AJOL)

    DR. AMINU

    ... of Salmonella species serotypes in relation to age and sex among children, ..... However, most antimicrobials show sufficient selective toxicity to be of value in ... salmonellosis should be given good attention (Barrow et al., 2007). To reduce ...

  12. Endangered Species Day | Endangered Species Coalition

    Science.gov (United States)

    Annual Top 10 Report Protecting the Endangered Species Act Wildlife Voices Stand for Wolves Endangered Campaigns Wildlife Voices Protecting the Endangered Species Act Annual Top 10 Report Endangered Species Day Stand for Wolves Vanishing BOOK: A Wild Success The Endangered Species Act at 40 Endangered Species The

  13. Enchytraeids and earthworms (Annelida: Clitellata: Enchytraeidae, Lumbricidae) of parks in the city of Brno, Czech Republic

    Czech Academy of Sciences Publication Activity Database

    Schlaghamerský, J.; Pižl, Václav

    2009-01-01

    Roč. 81, č. 2 (2009), s. 145-173 ISSN 1864-6417 R&D Projects: GA AV ČR IAA600660608 Institutional research plan: CEZ:AV0Z60660521 Keywords : annelids * soil * urban ecology Subject RIV: EH - Ecology, Behaviour

  14. Effect of zinc-enriched natural sediments, in isolated and microcosm models, on three species of benthic invertebrates

    International Nuclear Information System (INIS)

    Galar Martinez, Marcela; Martinez-Tabche, Laura; Sanchez-Hidalgo, Eugenia; Lopez Lopez, Eugenia

    2006-01-01

    Availability of toxic in aquatic bodies is limited by the physicochemical characteristics of sediments and water, as well as by the interactions between the different xenobiotics and inhabits species. The aim of this work was to relate the effect produced by zinc (Zn) spiked in sediments of the Ignacio Ramirez dam (PIR), in isolated and microcosm models, on ATP concentration of three benthic organisms with the metal biodisponibility. The selected species were a crustacean, an annelid and a mollusk: Hyalella azteca (Amphipoda: Hyalellidae), Limnodrilus hoffmeisteri (Oligochaeta: Tubificidae) and Stagnicola attenuata (Basommatophora: Lymnaeidae), species that are found at high proportions in the reservoir and use different spaces in the benthos. Samples of sediments and organisms were collected from the PIR during the dry season (February of 1999). Metal concentration (Zn, Fe, Cu and Ni), pH, texture, particle size, total nitrogen and organic matter were determined in sediments. Sublethal studies were carried out using two types of static systems (isolated and in microcosm organisms). Both models contained PIR sediments enriched with Zn (nominal concentration of 0.8129 mg/kg) and synthetic water in a proportion of 1:4. The test organisms were added to the systems once the equilibrium was reached (2 hr) considering the biomass quantity with respect to volume (1.0 g of organism by each 100 ml of water:sediment). After 0, 12, 24, 36, 48 and 72 hr of exposure, samples of sediment and hydrobionts were taken, and Zn content was quantified by atomic absorption. ATP concentration was also determined in organisms. The effect produced by natural sediments spiked with Zn is increased by the presence of more than one specie in the system (microcosm). With respect to Zn levels, two of the organisms (L. hoffmeisteri y S. attenuata) tend to lose this metal in isolated and microcosm models, probably as a regulation strategy in its accumulation, as well as Fe presence in the

  15. Species concept and speciation

    Directory of Open Access Journals (Sweden)

    Amal Y. Aldhebiani

    2018-03-01

    Full Text Available Defining and recognizing a species has been a controversial issue for a long time. To determine the variation and the limitation between species, many concepts have been proposed. When a taxonomist study a particular taxa, he/she must adopted a species concept and provide a species limitation to define this taxa. In this paper some of species concepts are discussed starting from the typological species concepts to the phylogenetic concept. Positive and negative aspects of these concepts are represented in addition to their application. Keywords: Species concept, Species limitation, Species, Taxonomy, Classification

  16. Species accounts. Chapter 4

    Science.gov (United States)

    Margaret K. Trani; W. Mark Ford; Brian R., eds. Chapman

    2007-01-01

    Narrative accounts for each species are presented by several authors in a consistent format to convey specific information relative to that mammal. The orders are arranged phylogenetically; families and species are arranged alphabetically to facilitate finding a particular species.

  17. Évaluation de la toxicité d’un herbicide à base de 2,4-D sur le ver de terre Eudrilus eugeniae Kinberg, 1867 (Oligochaeta, Eudrilidae

    Directory of Open Access Journals (Sweden)

    Kouakou Gains KPAN KPAN

    2017-09-01

    Full Text Available 2,4-D is commonly used in the world to control undesirable plant species in monocotyledonous fields. The massive use of this herbicide requires knowledge of its ecotoxicological spectrum for better regulation of its use. This study aimed to characterize acute toxicity and to determine the long-term effects of a 2,4-D herbicide on Eudrilus eugeniae. The tests were carried out in Azaguié (Côte d’Ivoire, on natural soil enriched with rabbit droppings. The lethal concentration (LC50 was 175.6±12.3 mg/kg. The exposure of earthworms to 20 mg/l of 2,4-D (9.2 mg/kg reduced significantly cocoon production, hatching rate and juvenile’s number per cocoon. With regard to these results, we concluded that 2,4-D based herbicides are potential threat to earthworms because CL 50 was largely below concentrations of 1920 mg/l and 2880 mg/l of 2,4-D recommended by the manufacturer.

  18. Agroforestry Species Switchboard

    DEFF Research Database (Denmark)

    Kindt, R.; John, I.; Ordonez, J.

    2016-01-01

    The current version of the Agroforestry Species Switchboard documents the presence of a total of 26,135 plant species (33,813 species including synonyms) across 19 web-based databases. When available, hyperlinks to information on the selected species in particular databases are provided. In total...

  19. Interrelationships between soil biota and soil physical properties in forest areas of the Pieniny National Park (Poland)

    Science.gov (United States)

    Józefowska, Agnieszka; Zaleski, Tomasz; Sokołowska, Justyna; Dzierwa, Agata

    2017-04-01

    The study area was located in the Pieniny National Park (PNP) in the Carpathian Mountain (Southern Poland). Investigated soil belonged to Eutric Cambisols and had silt or silt loam texture. The purpose of this research was to investigated relationship between soil biota, such as microbial activity, soil Oligochaeta (Lumbricidae and Enchytraeidae) and soil physical properties, such as water retention or aggregates stability. This research was conducted at six forest monitoring areas of the PNP. Sampling was collected in the September 2016. For each of the 6 places, undisturbed and disturbed soil samples were taken from the 0-15-cm and 15-30-cm layer in 3 to 5 replicates. Undisturbed soil was taken: i) into Kopecky cylinders to determined soil physical properties; ii) a soil cores to determined enchytraeids and fine roots biomass (RB). Disturbed soil was collected in 3 reps and homogenized. Next such soil samples were divided into three parts: i) fresh one to determined dehydrogenase activity (ADh), microbial carbon biomass (MC) and labile carbon (LC); ii) air-dried, passed through a sieve (2-mm mesh size) and used for analysis: pH, organic carbon and bulk density; iii) last part air dried was used to determined stability of different size aggregates. In field, earthworms were collected in 3 reps using hand sorting method. Investigated soils were strongly acidic to neutral (pH 4.8-6.8). Organic carbon (Corg) content was varied from 0.8% to 4.5% and was higher in 0-15-cm layers than in 15-30-cm layers. Higher Corgcontent was connected with lower bulk density. Enchytraeids density was ranged from 1807 ind. m-2 to 88855 ind. m-2 and was correlated with microbial activity (ADh and MB) and RB. Earthworms density (ED) was ranged from 7 ind. m-2to 507 ind. m-2. In investigated soil was 6 genus and 7 species (Octolasion lacteum, Aporrectodea caliginosa, Aporrectodea rosea, Aporrectodea jassyensis, Lumbricus rubellus, Eisenia lucens, and Fitzingeria platyura depressa). ED was

  20. Endangered Species Act

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The purpose of the Endangered Species Act (ESA) is to protect and recover imperiled species and the ecosystems upon which they depend. The U.S. Fish and Wildlife...

  1. Endangered Species Protection Bulletins

    Science.gov (United States)

    Endangered Species Protection Bulletins set forth geographically specific pesticide use limitations for the protection of threatened and endangered (listed) species and their designated critical habitat. Find out how to get and use Bulletins.

  2. Species diversity modulates predation

    NARCIS (Netherlands)

    Kratina, P.; Vos, M.; Anholt, B.R.

    2007-01-01

    Predation occurs in a context defined by both prey and non-prey species. At present it is largely unknown how species diversity in general, and species that are not included in a predator's diet in particular, modify predator–prey interactions.Therefore we studied how both the density and diversity

  3. Species choice, provenance and species trials among native Brazilian species

    Energy Technology Data Exchange (ETDEWEB)

    Drumond, M A

    1982-01-01

    Six papers from the conference are presented. Drumond, M.A., Potential of species native to the semi-arid tropics, 766-781, (Refs. 18), reports on Anadenanthera macrocarpa, Mimosa species, Schinopsis brasiliensis, Spondias tuberosa, Ziziphus joazeiro, Cnidoscolus phyllacanthus, Bursera leptophleos (leptophloeos), Tabebuia impetiginosa, Astronium urundeuva, and Mimosa caesalpinia. Monteiro, R.F.R., Speltz, R.M., Gurgel, J.T. do A.; Silvicultural performance of 24 provenances of Araucaria angustifolia in Parana, 814-824, (Refs. 8). Pires, C.L. da S., Kalil Filho, A.N., Rosa, P.R.F. da, Parente, P.R., Zanatto, A.C.S.; Provenance trials of Cordia alliodora in the State of Sao Paulo, 988-995, (Refs. 9). Nogueira, J.C.B., Siqueira, A.C.M.F., Garrido, M.A.O., Gurgel Garrido, L.M. do A., Rosa, P.R.F., Moraes, J.L. de, Zandarin, M.A., Gurgel Filho, O.A., Trials of some native species in various regions of the State of Sao Paulo, 1051-1063, (Refs. 9) describes Centrolobium tomentosum, Peltophorum dubium, Tabebuia vellosoi, Cariniana legalis, and Balfourodendron riedelianum. Batista, M.P., Borges, J.F., Franco, M.A.B.; Early growth of a native species in comparison with exotics in northeastern Para, Brazil, 1105-1110, (Refs. 3). Jacaranda copaia is compared with Gmelina arborea, Pinus caribaea various hondurensis, Eucalyptus deglupta, and E. urophylla. Lima, P.C.F., Souza, S.M. de, Drumond, M.A.; Trials of native forest species at Petrolina, Pernambuco, 1139-1148, (Refs. 8), deals with Anadenanthera macrocarpa, Piptadenia obliqua, Pithecellobium foliolosum, Astronium urundeuva, Schinopsis brasiliensis, Cassia excelsa, Caesalpinia pyramidalis, Parkia platycephala, Pseudobombax simplicifolium, Tabebuia impetiginosa, Caesalpinia ferrea, and Aspidosperma pyrifolium. 18 references.

  4. Separation of chemical species

    International Nuclear Information System (INIS)

    Rentzepis, P.M.

    1977-01-01

    Isotopic separation is accomplished by (1) a second photon irradiation step for selective ionization of a first isotopic species and (2) selective precipitation of a generally immiscible liquid from the saturating vapor phase on the ionized species. The first photon corresponds with a sharply defined spectral portion of the irradiation which exclusively excites the first species to a vibrational level. The second photon further excites this species to its ionization level. Selective precipitation is by coulombic attraction between the ionized species and the vapor. The procedure is applicable to any vapor phase ionizable material

  5. Detection of cryptic species

    International Nuclear Information System (INIS)

    Cockburn, A.F.; Jensen, T.; Seawright, J.A.

    1998-01-01

    Morphologically similar cryptic species are common in insects. In Anopheles mosquitoes morphologically described species are complexes of cryptic species. Cryptic species are of great practical importance for two reasons: first, one or more species of the complex might not be a pest and control efforts directed at the complex as a whole would therefore be partly wasted; and second, genetic (and perhaps biological) control strategies directed against one species of the complex would not affect other species of the complex. At least one SIT effort has failed because the released sterile insect were of a different species and therefore did not mate with the wild insects being targeted. We use a multidisciplinary approach for detection of cryptic species complexes, focusing first on identifying variability in wild populations using RFLPs of mitochondrial and ribosomal RNA genes (mtDNA and rDNA); followed by confirmation using a variety of other techniques. For rapid identification of wild individuals of field collections, we use a DNA dot blot assay. DNA probes can be isolated by differential screening, however we are currently focusing on the sequencing of the rDNA extragenic spacers. These regions are repeated several hundred times per genome in mosquitoes and evolve rapidly. Molecular drive tends to keen the individual genes homogeneous within a species. (author)

  6. Detection of cryptic species

    Energy Technology Data Exchange (ETDEWEB)

    Cockburn, A F; Jensen, T; Seawright, J A [United States Dept. of Agriculture, Agricultural Research Service, Medical and Veterinary Entomology Research Lab., Gainesville, FL (United States)

    1998-01-01

    Morphologically similar cryptic species are common in insects. In Anopheles mosquitoes morphologically described species are complexes of cryptic species. Cryptic species are of great practical importance for two reasons: first, one or more species of the complex might not be a pest and control efforts directed at the complex as a whole would therefore be partly wasted; and second, genetic (and perhaps biological) control strategies directed against one species of the complex would not affect other species of the complex. At least one SIT effort has failed because the released sterile insect were of a different species and therefore did not mate with the wild insects being targeted. We use a multidisciplinary approach for detection of cryptic species complexes, focusing first on identifying variability in wild populations using RFLPs of mitochondrial and ribosomal RNA genes (mtDNA and rDNA); followed by confirmation using a variety of other techniques. For rapid identification of wild individuals of field collections, we use a DNA dot blot assay. DNA probes can be isolated by differential screening, however we are currently focusing on the sequencing of the rDNA extragenic spacers. These regions are repeated several hundred times per genome in mosquitoes and evolve rapidly. Molecular drive tends to keen the individual genes homogeneous within a species. (author). 11 refs, 2 figs, 2 tabs.

  7. Effect Of Various Substrates On Eudrilus eugeniae (Oligochaeta Production

    Directory of Open Access Journals (Sweden)

    Mpoame, M.

    1994-01-01

    Full Text Available In order to assess the effects of substrate on Eudrilus eugeniae production, 360 worms were raised in plastic buckets containing manure either from cattle (BV, from sheep (CM, from rabbit (CL, and from chicken (FP. At the end of the experiment which lasted 4 months, worm productivity was estimated at 111.9 g/kg of substrate in CL, 86.3 g/kg in CM, and 33.0 g/kg in BV. Substrate FP was inadequate as worms escaped from it. In another trial aiming at determining some of E. Eugeniae's reproductive parameters, each of the 3 substrates BV, CL, and CM was distributed into 15 plastic half bottles and was inoculated with one cocoon. In the 3 substrates cocoon incubation time and growing period were estimated at 3 to 4 weeks and 6 to 7 weeks respectively. Cocoons were laid approximately a week after the pairing of worms. On the average, each worm laid 2 cocoons per week.

  8. Earthworms (Annelida: Oligochaeta) of the Columbia River basin assessment area.

    Science.gov (United States)

    Sam. James

    2000-01-01

    Earthworms are key components of many terrestrial ecosystems; however, little is known of their ecology, distribution, and taxonomy in the eastern interior Columbia River basin assessment area (hereafter referred to as the basin assessment area). This report summarizes the main issues about the ecology of earthworms and their impact on the physical and chemical status...

  9. Chapter 16: Species Diversity

    African Journals Online (AJOL)

    zargaran

    2012-05-03

    May 3, 2012 ... rarefaction method was recorded in Pardanan, with 28 oak gall wasps species. Furthermore, the highest amount of Gini-Simpson and Shannon entropy index were recorded in Sardasht, while the highest evenness was recorded in Shalmash. Differences in the local distribution of oak species, especially.

  10. The Origin of Species

    NARCIS (Netherlands)

    Darwin, Charles

    2005-01-01

    In The Origin of Species Darwin outlined his theory of evolution, which proposed that species had been evolving and differentiating over time under the influence of natural selection. On its publication it became hugely influential, bringing about a seismic shift in the scientific view of humanitys

  11. Aquatic species and habitats

    Science.gov (United States)

    Danny C. Lee; James R. Sedell; Bruce E. Rieman; Russell F. Thurow; Jack E. Williams

    1998-01-01

    Continuing human activities threaten the highly prized aquatic resources of the interior Columbia basin. Precipitous declines in native species, particularly Pacific salmon, and a large influx of introduced species have radically altered the composition and distribution of native fishes. Fortunately, areas of relatively high aquatic integrity remain, much of it on...

  12. Support your local species

    DEFF Research Database (Denmark)

    Stärk, Johanna

    Nearly a quarter of all animal species within the European Union are threatened with extinction. Protecting many of these species will require the full spectrum of conservation actions from in-situ to ex-situ management. Holding an estimated 44% of EU Red Listed terrestrial vertebrates, zoos hereby...

  13. Extragastric Helicobacter species

    DEFF Research Database (Denmark)

    On, Stephen L.W.; Hynes, S.; Wadstrom, T.

    2002-01-01

    The genus Helicobacter has expanded at a rapid pace and no fewer than 31 species have been named since the proposal of the genus in 1989. Of these 31 species, 22 are principally associated with extragastric niches and there is increasing interest in the role of these taxa in diseases of humans...... and animals. Substantial evidence attests to certain species playing a role in the pathogenesis of enteric, hepatic and biliary disorders and some taxa demonstrate zoonotic potential. The importance of extragastric Helicobacters is likely to be an important topic for research in the near future. Here...

  14. The species in primatology.

    Science.gov (United States)

    Groves, Colin

    2014-01-01

    Biologists of the late eighteenth and early nineteenth centuries all bandied about the term "species," but very rarely actually said what they meant by it. Often, however, one can get inside their thinking by piecing together some of their remarks. One of the most nearly explicit-appropriately, for the man who wrote a book called The Origin of Species - was Charles Darwin: "Practically, when a naturalist can unite two forms together by others having intermediate characters, he treats the one as a variety of the other… He later translated this into evolutionary terms: "Hereafter, we shall be compelled to acknowledge that the only distinction between species and well-marked varieties is, that the latter are known, or believed, to be connected at the present day by intermediate gradations, whereas species were formerly thus connected"(1:484-5.) Copyright © 2014 Wiley Periodicals, Inc.

  15. Hierarchical species distribution models

    Science.gov (United States)

    Hefley, Trevor J.; Hooten, Mevin B.

    2016-01-01

    Determining the distribution pattern of a species is important to increase scientific knowledge, inform management decisions, and conserve biodiversity. To infer spatial and temporal patterns, species distribution models have been developed for use with many sampling designs and types of data. Recently, it has been shown that count, presence-absence, and presence-only data can be conceptualized as arising from a point process distribution. Therefore, it is important to understand properties of the point process distribution. We examine how the hierarchical species distribution modeling framework has been used to incorporate a wide array of regression and theory-based components while accounting for the data collection process and making use of auxiliary information. The hierarchical modeling framework allows us to demonstrate how several commonly used species distribution models can be derived from the point process distribution, highlight areas of potential overlap between different models, and suggest areas where further research is needed.

  16. Endangered Species: Pesticide Restrictions

    Science.gov (United States)

    Our goal is to protect threatened and endangered species and their habitats, without placing unnecessary burden on agriculture and pesticide users. Pesticide limitations are developed to ensure safe use of pesticides in order to meet this goal.

  17. Threatened & Endangered Species Occurrences

    Data.gov (United States)

    Kansas Data Access and Support Center — The database consists of a single statewide coverage of location records for 54 species contained in the Kansas Natural Heritage Inventory database of the Kansas...

  18. Sub specie aeternitatis

    Directory of Open Access Journals (Sweden)

    Laura Gioeni

    2012-10-01

    Full Text Available Per delineare il rapporto tra etica ed estetica nell'architettura e rispondere alla domanda principale «che cosa è o dovrebbe essere un buon architetto?», il saggio discute la tesi di Wittgenstein secondo cui «l'opera d'arte è l'oggetto visto sub specie aeternitatis e la vita buona è il mondo visto sub specie aeternitatis. Questa è la connessione tra arte ed etica».

  19. Genomic definition of species

    Energy Technology Data Exchange (ETDEWEB)

    Crkvenjakov, R.; Drmanac, R.

    1991-07-01

    The subject of this paper is the definition of species based on the assumption that genome is the fundamental level for the origin and maintenance of biological diversity. For this view to be logically consistent it is necessary to assume the existence and operation of the new law which we call genome law. For this reason the genome law is included in the explanation of species phenomenon presented here even if its precise formulation and elaboration are left for the future. The intellectual underpinnings of this definition can be traced to Goldschmidt. We wish to explore some philosophical aspects of the definition of species in terms of the genome. The point of proposing the definition on these grounds is that any real advance in evolutionary theory has to be correct in both its philosophy and its science.

  20. Bounding species distribution models

    Directory of Open Access Journals (Sweden)

    Thomas J. STOHLGREN, Catherine S. JARNEVICH, Wayne E. ESAIAS,Jeffrey T. MORISETTE

    2011-10-01

    Full Text Available Species distribution models are increasing in popularity for mapping suitable habitat for species of management concern. Many investigators now recognize that extrapolations of these models with geographic information systems (GIS might be sensitive to the environmental bounds of the data used in their development, yet there is no recommended best practice for “clamping” model extrapolations. We relied on two commonly used modeling approaches: classification and regression tree (CART and maximum entropy (Maxent models, and we tested a simple alteration of the model extrapolations, bounding extrapolations to the maximum and minimum values of primary environmental predictors, to provide a more realistic map of suitable habitat of hybridized Africanized honey bees in the southwestern United States. Findings suggest that multiple models of bounding, and the most conservative bounding of species distribution models, like those presented here, should probably replace the unbounded or loosely bounded techniques currently used [Current Zoology 57 (5: 642–647, 2011].

  1. Bounding Species Distribution Models

    Science.gov (United States)

    Stohlgren, Thomas J.; Jarnevich, Cahterine S.; Morisette, Jeffrey T.; Esaias, Wayne E.

    2011-01-01

    Species distribution models are increasing in popularity for mapping suitable habitat for species of management concern. Many investigators now recognize that extrapolations of these models with geographic information systems (GIS) might be sensitive to the environmental bounds of the data used in their development, yet there is no recommended best practice for "clamping" model extrapolations. We relied on two commonly used modeling approaches: classification and regression tree (CART) and maximum entropy (Maxent) models, and we tested a simple alteration of the model extrapolations, bounding extrapolations to the maximum and minimum values of primary environmental predictors, to provide a more realistic map of suitable habitat of hybridized Africanized honey bees in the southwestern United States. Findings suggest that multiple models of bounding, and the most conservative bounding of species distribution models, like those presented here, should probably replace the unbounded or loosely bounded techniques currently used [Current Zoology 57 (5): 642-647, 2011].

  2. Aquatic Nuisance Species Locator

    Science.gov (United States)

    Data in this map has been collected by the United States Geological Survey's Nonindigenous Aquatic Species program located in Gainesville, Florida (http://nas.er.usgs.gov/default.aspx). This dataset may have some inaccuracies and is only current to June 15, 2012. The species identified in this dataset are not inclusive of all aquatic nuisance species, but rather a subset identified to be at risk for transport by recreational activities such as boating and angling. Additionally, the locations where organisims have been identified are also not inclusive and should be treated as a guide. Organisms are limited to the following: American bullfrog, Asian clam, Asian shore crab, Asian tunicate, Australian spotted jellyfish, Chinese mitten crab, New Zealand mudsnail, Colonial sea squirt, Alewife, Bighead carp, Black carp, Flathead catfish, Grass carp, Green crab, Lionfish, Northern snakehead, Quagga mussel, Round Goby, Ruffe, Rusty crayfish, Sea lamprey, Silver carp, Spiny water flea, Veined rapa whelk, Zebra mussel

  3. Man as a Species.

    Science.gov (United States)

    Solem, Alan; And Others

    Written in 1964, the document represents experimental material of the Anthropology Curriculum Study Project. The objectives of the project were to discuss the evolution of man as distinguished from the evolution of other species and as related to culture, and to emphasize human diversity. Three brief essays are presented. The first, "The…

  4. Coevolution of Symbiotic Species

    OpenAIRE

    Leok, Boon Tiong Melvin

    1996-01-01

    This paper will consider the coevolution of species which are symbiotic in their interaction. In particular, we shall analyse the interaction of squirrels and oak trees, and develop a mathematical framework for determining the coevolutionary equilibrium for consumption and production patterns.

  5. Positive feedback in species communities

    NARCIS (Netherlands)

    Gerla, D.J.

    2012-01-01

    Sometimes the eventual population densities in a species community depend on the initial densities or the arrival times of species. If arrival times determine species composition, a priority effect has occurred. Priority effects may occur if the species community exhibits alternative stable states

  6. The functional biogeography of species

    DEFF Research Database (Denmark)

    Carstensen, Daniel W.; Dalsgaard, Bo; Svenning, Jens-Christian

    2013-01-01

    Biogeographical systems can be analyzed as networks of species and geographical units. Within such a biogeographical network, individual species may differ fundamentally in their linkage pattern, and therefore hold different topological roles. To advance our understanding of the relationship betw...... to distributions at the local community level. We finally discuss how our biogeographical species roles may correspond to the stages of the taxon cycle and other prominent theories of species assembly.......Biogeographical systems can be analyzed as networks of species and geographical units. Within such a biogeographical network, individual species may differ fundamentally in their linkage pattern, and therefore hold different topological roles. To advance our understanding of the relationship...... between species traits and large-scale species distribution patterns in archipelagos, we use a network approach to classify birds as one of four biogeographical species roles: peripherals, connectors, module hubs, and network hubs. These roles are based upon the position of species within the modular...

  7. Autecology of broadleaved species

    OpenAIRE

    Gonin, Pierre; Larrieu, Laurent; Coello, Jaime; Marty, Pauline; Lestrade , Marine; Becquey, Jacques; Claessens, Hugues

    2013-01-01

    Anyone involved in timber production needs some knowledge of autecology. With the renewed interest in hardwoods in the last 20 years, they are increasingly being introduced by planting or encouraged in natural stands. The results in terms of growth have not always met foresters’ expectations, due to technical problems and especially because the species are not always suited to the different sites. While the principle of establishing hardwoods is not in question, it is important to be aware of...

  8. Prior indigenous technological species

    Science.gov (United States)

    Wright, Jason T.

    2018-01-01

    One of the primary open questions of astrobiology is whether there is extant or extinct life elsewhere the solar system. Implicit in much of this work is that we are looking for microbial or, at best, unintelligent life, even though technological artefacts might be much easier to find. Search for Extraterrestrial Intelligence (SETI) work on searches for alien artefacts in the solar system typically presumes that such artefacts would be of extrasolar origin, even though life is known to have existed in the solar system, on Earth, for eons. But if a prior technological, perhaps spacefaring, species ever arose in the solar system, it might have produced artefacts or other technosignatures that have survived to present day, meaning solar system artefact SETI provides a potential path to resolving astrobiology's question. Here, I discuss the origins and possible locations for technosignatures of such a prior indigenous technological species, which might have arisen on ancient Earth or another body, such as a pre-greenhouse Venus or a wet Mars. In the case of Venus, the arrival of its global greenhouse and potential resurfacing might have erased all evidence of its existence on the Venusian surface. In the case of Earth, erosion and, ultimately, plate tectonics may have erased most such evidence if the species lived Gyr ago. Remaining indigenous technosignatures might be expected to be extremely old, limiting the places they might still be found to beneath the surfaces of Mars and the Moon, or in the outer solar system.

  9. Estimating Effects of Species Interactions on Populations of Endangered Species.

    Science.gov (United States)

    Roth, Tobias; Bühler, Christoph; Amrhein, Valentin

    2016-04-01

    Global change causes community composition to change considerably through time, with ever-new combinations of interacting species. To study the consequences of newly established species interactions, one available source of data could be observational surveys from biodiversity monitoring. However, approaches using observational data would need to account for niche differences between species and for imperfect detection of individuals. To estimate population sizes of interacting species, we extended N-mixture models that were developed to estimate true population sizes in single species. Simulations revealed that our model is able to disentangle direct effects of dominant on subordinate species from indirect effects of dominant species on detection probability of subordinate species. For illustration, we applied our model to data from a Swiss amphibian monitoring program and showed that sizes of expanding water frog populations were negatively related to population sizes of endangered yellow-bellied toads and common midwife toads and partly of natterjack toads. Unlike other studies that analyzed presence and absence of species, our model suggests that the spread of water frogs in Central Europe is one of the reasons for the decline of endangered toad species. Thus, studying population impacts of dominant species on population sizes of endangered species using data from biodiversity monitoring programs should help to inform conservation policy and to decide whether competing species should be subject to population management.

  10. CHROMOSOMES OF WOODY SPECIES

    Directory of Open Access Journals (Sweden)

    Julio R Daviña

    2000-01-01

    Full Text Available Chromosome numbers of nine subtropical woody species collected in Argentina and Paraguay are reported. The counts tor Coutarea hexandra (2n=52, Inga vera subsp. affinis 2n=26 (Fabaceae and Chorisia speciosa 2n=86 (Bombacaceae are reported for the first time. The chromosome number given for Inga semialata 2n=52 is a new cytotype different from the previously reported. Somatic chromosome numbers of the other taxa studied are: Sesbania punicea 2n=12, S. virgata 2n=12 and Pilocarpus pennatifolius 2n=44 from Argentina

  11. Save Our Species: Protecting Endangered Species from Pesticides.

    Science.gov (United States)

    Environmental Protection Agency, Washington, DC.

    This full-size poster profiles 11 wildlife species that are endangered. Color illustrations of animals and plants are accompanied by narrative describing their habitats and reasons for endangerment. The reverse side of the poster contains information on the Endangered Species Act, why protecting endangered and threatened species is important, how…

  12. New species of Malaysian ferns

    NARCIS (Netherlands)

    Holttum, R.E.

    1962-01-01

    The present paper includes descriptions of several new species of ferns found among recent collections from various parts of Malaysia; also two new combinations of names of species which are of interest on account of their taxonomic history.

  13. Endangered Species Act Critical Habitat

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Critical habitat (CH) is designated for the survival and recovery of species listed as threatened or endangered under the Endangered Species Act (ESA). Critical...

  14. New Malesian species of Viscaceae

    NARCIS (Netherlands)

    Barlow, Bryan A.

    1996-01-01

    Three new Malesian species of Viscaceae are described. Ginalloa flagellaris Barlow is distinguished as a species from New Guinea and New Britain, previously included within G. arnottiana Korthals. Viscum exile Barlow is recognized as a new species endemic to Celebes, related to V. ovalifolium.

  15. Lichen species preference by reindeer

    Energy Technology Data Exchange (ETDEWEB)

    Holleman, D F; Luick, J R

    1977-08-01

    The preference by reindeer for five species of lichens commonly found on Central Alaska rangelands was tested under controlled laboratory conditions. Results indicate that reindeer are strongly selective species in their lichen grazing habits. The five tested species ranged as follows in order of decreasing acceptibility: Caldonia alpestris, C. rangiferina, Stereocaulon paschale, Cetraria richardsonii, and Peltigera aphthosa.

  16. 75 FR 78974 - Endangered Species

    Science.gov (United States)

    2010-12-17

    ...-XA086 Endangered Species AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and... the Endangered Species Act of 1973, as amended (16 U.S.C. 1531 et seq.) and the regulations governing the taking, importing, and exporting of endangered and threatened species (50 CFR 222-226). Permit...

  17. California Endangered Species Resource Guide.

    Science.gov (United States)

    California State Dept. of Education, Los Angeles.

    This document was developed in response to California Senate Bill No. 885, "The Endangered Species Education Project," that called for a statewide program in which schools adopt a local endangered species, research past and current efforts to preserve the species' habitat, develop and implement an action plan to educate the community…

  18. 76 FR 2348 - Endangered Species

    Science.gov (United States)

    2011-01-13

    .... 15596] Endangered Species AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and... requested permit has been issued under the authority of the Endangered Species Act of 1973, as amended (ESA... endangered and threatened species (50 CFR parts 222-226). The North Carolina Aquarium at Fort Fisher has been...

  19. Electrosmog and species conservation

    Energy Technology Data Exchange (ETDEWEB)

    Balmori, Alfonso, E-mail: abalmorimartinez@gmail.com

    2014-10-15

    Despite the widespread use of wireless telephone networks around the world, authorities and researchers have paid little attention to the potential harmful effects of mobile phone radiation on wildlife. This paper briefly reviews the available scientific information on this topic and recommends further studies and specific lines of research to confirm or refute the experimental results to date. Controls must be introduced and technology rendered safe for the environment, particularly, threatened species. - Highlights: • Studies have shown effects in both animals and plants. • Two thirds of the studies reported ecological effects. • There is little research in this area and further research is needed. • The technology must be safe. • Controls should be introduced to mitigate the possible effects.

  20. Management of invasive species

    DEFF Research Database (Denmark)

    Schou, Jesper Sølver; Jensen, Frank

    impact of the establishment of this invasive species is a substantial increase in the number of allergy cases, which we use as a measure of the physical damage. As valuation methods, we use both the cost-of-illness method and the benefit transfer method to quantify the total gross benefits of the two...... policy actions. Based on the idea of an invasion function, we identify the total and average net benefit under both prevention and mitigation. For both policy actions, the total and average net benefits are significantly positive irrespective of the valuation method used; therefore, both prevention...... and mitigation are beneficial policy actions. However, the total and average net benefits under mitigation are larger than the benefits under prevention, implying that the former policy action is more beneficial. Despite this result, we conclude that prevention, not mitigation, shall be used because...

  1. Prices and species diversity

    DEFF Research Database (Denmark)

    Sauer, Johannes

    of biodiversity and the appropriate incorporation in stochastic fron-tier models to achieve more realistic measures of production efficiency. We use the empirical example of tobacco production drawing from as well as affecting species diversity in the surrounding forests. We apply a shadow profit distance......In recent decades a significant amount of literature has been produced concerned with establishing a link between production efficiency and environmental efficiency with respect to quantitative modelling. This has been mainly addressed by focusing on the incorporation of undesirable outputs...... or the incorporation of environmentally det-rimental inputs. However, while the debate with respect to linear programming based DEA modelling is already at an advanced stage the corresponding one with respect to stochastic frontier modelling still needs considerable efforts. This contribution fo-cuses on the case...

  2. Reactive Oxygen Species

    DEFF Research Database (Denmark)

    Franchina, Davide G.; Dostert, Catherine; Brenner, Dirk

    2018-01-01

    T cells are a central component of defenses against pathogens and tumors. Their effector functions are sustained by specific metabolic changes that occur upon activation, and these have been the focus of renewed interest. Energy production inevitably generates unwanted products, namely reactive...... and transcription factors, influencing the outcome of the T cell response. We discuss here how ROS can directly fine-tune metabolism and effector functions of T cells....... oxygen species (ROS), which have long been known to trigger cell death. However, there is now evidence that ROS also act as intracellular signaling molecules both in steady-state and upon antigen recognition. The levels and localization of ROS contribute to the redox modeling of effector proteins...

  3. Introduced species as evolutionary traps

    Science.gov (United States)

    Schlaepfer, Martin A.; Sherman, P.W.; Blossey, B.; Runge, M.C.

    2005-01-01

    Invasive species can alter environments in such a way that normal behavioural decision-making rules of native species are no longer adaptive. The evolutionary trap concept provides a useful framework for predicting and managing the impact of harmful invasive species. We discuss how native species can respond to changes in their selective regime via evolution or learning. We also propose novel management strategies to promote the long-term co-existence of native and introduced species in cases where the eradication of the latter is either economically or biologically unrealistic.

  4. Insular species swarm goes underground

    DEFF Research Database (Denmark)

    P. S. Reboleira, Ana Sofia; Enghoff, Henrik

    2014-01-01

    Two new species of the genus Cylindroiulus Verhoeff, 1894, C. julesvernei and C. oromii, are described from the subterranean ecosystem of Madeira Island, Portugal. Species are illustrated with photographs and diagrammatic drawings. The new species belong to the Cylindroiulus madeirae......-group, an insular species swarm distributed in the archipelagos of Madeira and the Canary Islands. We discuss the differences between the new species and their relatives and present information on the subterranean environment of Madeira. An updated overview of the subterranean biodiversity of millipedes...

  5. Ring species as demonstrations of the continuum of species formation

    DEFF Research Database (Denmark)

    Pereira, Ricardo José Do Nascimento; Wake, David B.

    2015-01-01

    In the mid-20th century, Ernst Mayr (1942) and Theodosius Dobzhansky (1958) championed the significance of 'circular overlaps' or 'ring species' as the perfect demonstration of the gradual nature of species formation. As an ancestral species expands its range, wrapping around a geographic barrier......? What conditions favour their formation? Modelling studies have attempted to address these knowledge gaps by estimating the biological parameters that result in stable ring species (Martins et al. 2013), and determining the necessary topographic parameters of the barriers encircled (Monahan et al. 2012......). However, any generalization is undermined by a major limitation: only a handful of ring species are known to exist in nature. In addition, many of them have been broken into multiple species presumed to be evolving independently, usually obscuring the evolutionary dynamics that generate diversity. A paper...

  6. Species of Wadicosa (Araneae, Lycosidae): a new species from Madagascar.

    Science.gov (United States)

    Kronestedt, Torbjörn

    2017-05-10

    Since establishing the wolf spider genus Wadicosa Zyuzin, 1985 (Zyuzin 1985), eleven species have been accepted in it, either by transfer from Lycosa Latreille, 1804 or Pardosa C.L. Koch, 1847 or by original designation (WSC 2017). However, according to Kronestedt (1987), additional species wait to be formally transferred to Wadicosa. The genus is restricted to the Old World, with one species, Wadicosa jocquei Kronestedt, 2015, recently described from Madagascar and surrounding islands.

  7. Native species that can replace exotic species in landscaping

    Directory of Open Access Journals (Sweden)

    Elisabeth Regina Tempel Stumpf

    2015-08-01

    Full Text Available Beyond aesthetics, the contemporary landscaping intends to provide other benefits for humans and environment, especially related to the environmental quality of urban spaces and conservation of the species. A trend in this direction is the reduction in the use of exotic plants in their designs, since, over time, they can become agents of replacement of native flora, as it has occurred in Rio Grande do Sul with many species introduced by settlers. However, the use of exotic species is unjustifiable, because the flora diversity of the Bioma Pampa offers many native species with appropriate features to the ornamental use. The commercial cultivation and the implantation of native species in landscaped areas constitute innovations for plant nurseries and landscapers and can provide a positive reduction in extractivism, contributing to dissemination, exploitation and preservation of native flora, and also decrease the impact of chemical products on environment. So, this work intends to identify native species of Bioma Pampa with features and uses similar to the most used exotic species at Brazilian landscaping. The species were selected from consulting books about native plants of Bioma Pampa and plants used at Brazilian landscaping, considering the similarity on habit and architecture, as well as characteristics of leafs, flowers and/or fruits and environmental conditions of occurrence and cultivation. There were identified 34 native species able to properly replace exotic species commonly used. The results show that many native species of Bioma Pampa have interesting ornamental features to landscape gardening, allowing them to replace exotic species that are traditionally cultivated.

  8. Population genetics and cryptic species

    International Nuclear Information System (INIS)

    McPheron, Bruce A.

    2000-01-01

    Does the definition of a species matter for pest management purposes? Taxonomists provide us with tools - usually morphological characters - to identify a group of organisms that we call a species. The implication of this identification is that all of the individuals that fit the provided description are members of the species in question. The taxonomists have considered the range of variation among individuals in defining the species, but this variation is often forgotten when we take the concept of species to the level of management. Just as there is morphological variation among individuals, there is also variation in practically any character we might imagine, which has implications for the short and long term success of our management tactics. The rich literature on insecticide resistance should be a constant reminder of the fact that the pressure on pest survival and reproduction applied by our management approaches frequently leads to evolutionary changes within the pest species. The degree of variation within a particular species is a defining characteristic of that species. This level of variability may have very important implications for successful management, so it is very important to measure variation and, whenever possible, the genetic basis of that variation, in a target species. Population genetic approaches can provide evidence of genetic structure (or lack thereof) among populations of a species. These types of data can be used to discuss the movement of pest populations on a local or global scale. In other cases, we may have a complex of species that share some, but not all, characteristics. Species complexes that share morphological characters (i.e., cannot be easily distinguished) but not biological characters are referred to as sibling or cryptic species

  9. Diversity and host specificity of the Verminephrobacter–earthworm symbiosis

    DEFF Research Database (Denmark)

    Lund, Marie Braad; Davidson, Seana; Holmstrup, Martin

    2010-01-01

    Symbiotic bacteria of the genus Verminephrobacter (Betaproteobacteria) were detected in the nephridia of 19 out of 23 investigated earthworm species (Oligochaeta: Lumbricidae) by 16S rRNA gene sequence analysis and fluorescence in situ hybridization (FISH). While all four Lumbricus species and th...

  10. Confronting species distribution model predictions with species functional traits.

    Science.gov (United States)

    Wittmann, Marion E; Barnes, Matthew A; Jerde, Christopher L; Jones, Lisa A; Lodge, David M

    2016-02-01

    Species distribution models are valuable tools in studies of biogeography, ecology, and climate change and have been used to inform conservation and ecosystem management. However, species distribution models typically incorporate only climatic variables and species presence data. Model development or validation rarely considers functional components of species traits or other types of biological data. We implemented a species distribution model (Maxent) to predict global climate habitat suitability for Grass Carp (Ctenopharyngodon idella). We then tested the relationship between the degree of climate habitat suitability predicted by Maxent and the individual growth rates of both wild (N = 17) and stocked (N = 51) Grass Carp populations using correlation analysis. The Grass Carp Maxent model accurately reflected the global occurrence data (AUC = 0.904). Observations of Grass Carp growth rate covered six continents and ranged from 0.19 to 20.1 g day(-1). Species distribution model predictions were correlated (r = 0.5, 95% CI (0.03, 0.79)) with observed growth rates for wild Grass Carp populations but were not correlated (r = -0.26, 95% CI (-0.5, 0.012)) with stocked populations. Further, a review of the literature indicates that the few studies for other species that have previously assessed the relationship between the degree of predicted climate habitat suitability and species functional traits have also discovered significant relationships. Thus, species distribution models may provide inferences beyond just where a species may occur, providing a useful tool to understand the linkage between species distributions and underlying biological mechanisms.

  11. Balance of bacterial species in the gut

    Indian Academy of Sciences (India)

    First page Back Continue Last page Overview Graphics. Balance of bacterial species in the gut. Protective. Lactobacillus species. Bifidobacterium species. Selected E. coli. Saccharomyces boulardii. Clostridium butyricum.

  12. Quantifying the invasiveness of species

    Directory of Open Access Journals (Sweden)

    Robert Colautti

    2014-04-01

    Full Text Available The success of invasive species has been explained by two contrasting but non-exclusive views: (i intrinsic factors make some species inherently good invaders; (ii species become invasive as a result of extrinsic ecological and genetic influences such as release from natural enemies, hybridization or other novel ecological and evolutionary interactions. These viewpoints are rarely distinguished but hinge on distinct mechanisms leading to different management scenarios. To improve tests of these hypotheses of invasion success we introduce a simple mathematical framework to quantify the invasiveness of species along two axes: (i interspecific differences in performance among native and introduced species within a region, and (ii intraspecific differences between populations of a species in its native and introduced ranges. Applying these equations to a sample dataset of occurrences of 1,416 plant species across Europe, Argentina, and South Africa, we found that many species are common in their native range but become rare following introduction; only a few introduced species become more common. Biogeographical factors limiting spread (e.g. biotic resistance, time of invasion therefore appear more common than those promoting invasion (e.g. enemy release. Invasiveness, as measured by occurrence data, is better explained by inter-specific variation in invasion potential than biogeographical changes in performance. We discuss how applying these comparisons to more detailed performance data would improve hypothesis testing in invasion biology and potentially lead to more efficient management strategies.

  13. Uncommon Species and Other Features

    Data.gov (United States)

    Vermont Center for Geographic Information — The Vermont Fish and Wildlife Department's Natural Heritage Inventory (NHI) maintains a database of uncommon, rare, threatened and endangered species and natural...

  14. Incorporating Context Dependency of Species Interactions in Species Distribution Models.

    Science.gov (United States)

    Lany, Nina K; Zarnetske, Phoebe L; Gouhier, Tarik C; Menge, Bruce A

    2017-07-01

    Species distribution models typically use correlative approaches that characterize the species-environment relationship using occurrence or abundance data for a single species. However, species distributions are determined by both abiotic conditions and biotic interactions with other species in the community. Therefore, climate change is expected to impact species through direct effects on their physiology and indirect effects propagated through their resources, predators, competitors, or mutualists. Furthermore, the sign and strength of species interactions can change according to abiotic conditions, resulting in context-dependent species interactions that may change across space or with climate change. Here, we incorporated the context dependency of species interactions into a dynamic species distribution model. We developed a multi-species model that uses a time-series of observational survey data to evaluate how abiotic conditions and species interactions affect the dynamics of three rocky intertidal species. The model further distinguishes between the direct effects of abiotic conditions on abundance and the indirect effects propagated through interactions with other species. We apply the model to keystone predation by the sea star Pisaster ochraceus on the mussel Mytilus californianus and the barnacle Balanus glandula in the rocky intertidal zone of the Pacific coast, USA. Our method indicated that biotic interactions between P. ochraceus and B. glandula affected B. glandula dynamics across >1000 km of coastline. Consistent with patterns from keystone predation, the growth rate of B. glandula varied according to the abundance of P. ochraceus in the previous year. The data and the model did not indicate that the strength of keystone predation by P. ochraceus varied with a mean annual upwelling index. Balanus glandula cover increased following years with high phytoplankton abundance measured as mean annual chlorophyll-a. M. californianus exhibited the same

  15. Previously unknown species of Aspergillus.

    Science.gov (United States)

    Gautier, M; Normand, A-C; Ranque, S

    2016-08-01

    The use of multi-locus DNA sequence analysis has led to the description of previously unknown 'cryptic' Aspergillus species, whereas classical morphology-based identification of Aspergillus remains limited to the section or species-complex level. The current literature highlights two main features concerning these 'cryptic' Aspergillus species. First, the prevalence of such species in clinical samples is relatively high compared with emergent filamentous fungal taxa such as Mucorales, Scedosporium or Fusarium. Second, it is clearly important to identify these species in the clinical laboratory because of the high frequency of antifungal drug-resistant isolates of such Aspergillus species. Matrix-assisted laser desorption/ionization-time of flight mass spectrometry (MALDI-TOF MS) has recently been shown to enable the identification of filamentous fungi with an accuracy similar to that of DNA sequence-based methods. As MALDI-TOF MS is well suited to the routine clinical laboratory workflow, it facilitates the identification of these 'cryptic' Aspergillus species at the routine mycology bench. The rapid establishment of enhanced filamentous fungi identification facilities will lead to a better understanding of the epidemiology and clinical importance of these emerging Aspergillus species. Based on routine MALDI-TOF MS-based identification results, we provide original insights into the key interpretation issues of a positive Aspergillus culture from a clinical sample. Which ubiquitous species that are frequently isolated from air samples are rarely involved in human invasive disease? Can both the species and the type of biological sample indicate Aspergillus carriage, colonization or infection in a patient? Highly accurate routine filamentous fungi identification is central to enhance the understanding of these previously unknown Aspergillus species, with a vital impact on further improved patient care. Copyright © 2016 European Society of Clinical Microbiology and

  16. Fuzzy species among recombinogenic bacteria

    Directory of Open Access Journals (Sweden)

    Fraser Christophe

    2005-03-01

    Full Text Available Abstract Background It is a matter of ongoing debate whether a universal species concept is possible for bacteria. Indeed, it is not clear whether closely related isolates of bacteria typically form discrete genotypic clusters that can be assigned as species. The most challenging test of whether species can be clearly delineated is provided by analysis of large populations of closely-related, highly recombinogenic, bacteria that colonise the same body site. We have used concatenated sequences of seven house-keeping loci from 770 strains of 11 named Neisseria species, and phylogenetic trees, to investigate whether genotypic clusters can be resolved among these recombinogenic bacteria and, if so, the extent to which they correspond to named species. Results Alleles at individual loci were widely distributed among the named species but this distorting effect of recombination was largely buffered by using concatenated sequences, which resolved clusters corresponding to the three species most numerous in the sample, N. meningitidis, N. lactamica and N. gonorrhoeae. A few isolates arose from the branch that separated N. meningitidis from N. lactamica leading us to describe these species as 'fuzzy'. Conclusion A multilocus approach using large samples of closely related isolates delineates species even in the highly recombinogenic human Neisseria where individual loci are inadequate for the task. This approach should be applied by taxonomists to large samples of other groups of closely-related bacteria, and especially to those where species delineation has historically been difficult, to determine whether genotypic clusters can be delineated, and to guide the definition of species.

  17. 76 FR 74778 - Endangered Species

    Science.gov (United States)

    2011-12-01

    .... 16439] Endangered Species AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and... has been issued under the authority of the Endangered Species Act of 1973, as amended (ESA; 16 U.S.C. 1531 et seq.) and the regulations governing the taking, importing, and exporting of endangered and...

  18. [Yeast species in vulvovaginitis candidosa].

    Science.gov (United States)

    Nemes-Nikodém, Éva; Tamási, Béla; Mihalik, Noémi; Ostorházi, Eszter

    2015-01-04

    Vulvovaginal candidiasis is the most common mycosis, however, the available information about antifungal susceptibilities of these yeasts is limited. To compare the gold standard fungal culture with a new molecular identification method and report the incidence of yeast species in vulvovaginitis candidosa. The authors studied 370 yeasts isolated from vulvovaginal candidiasis and identified them by phenotypic and molecular methods. The most common species was Candida albicans (85%), followed by Candida glabrata, and other Candida species. At present there are no recommendations for the evaluation of antifungal susceptibility of pathogenic fungal species occurring in vulvovaginal candidiasis and the natural antifungal resistance of the different species is known only. Matrix Assisted Laser Desorption Ionization Time of Flight identification can be used to differentiate the fluconazole resistant Candida dubliniensis and the sensitive Candida albicans strains.

  19. Enolonium Species-Umpoled Enolates

    DEFF Research Database (Denmark)

    Arava, Shlomy; Kumar, Jayprakash N.; Maksymenko, Shimon

    2017-01-01

    Enolonium species/iodo(III) enolates of carbonyl compounds have been suggested to be intermediates in a wide variety of hypervalent iodine induced chemical transformations of ketones, including α-C-O, α-C-N, α-C-C, and alpha-carbon- halide bond formation, but they have never been characterized. We...... report that these elusive umpoled enolates may be made as discrete species that are stable for several minutes at-78 degrees C, and report the first spectroscopic identification of such species. It is shown that enolonium species are direct intermediates in C-O, C-N, C-Cl, and C-C bond forming reactions....... Our results open up chemical space for designing a variety of new transformations. We showcase the ability of enolonium species to react with prenyl, crotyl, cinnamyl, and allyl silanes with absolute regioselectivity in up to 92% yield....

  20. The counteracting effects of elevated atmospheric CO2 concentrations and drought episodes: Studies of enchytraeid communities in a dry heathland

    DEFF Research Database (Denmark)

    Maraldo, Kristine; Krogh, Paul Henning; Linden, Leon

    2010-01-01

    The potential impacts of interactions of multiple climate change factors in soil ecosystems have received little attention. Most studies have addressed effects of single factors such as increased temperature or atmospheric CO2 but little is known about how such environmental factors will interact...... impact of drought on the enchytraeids, compared to the year with a wet summer and autumn (2007). Our study emphasises the importance of multi-factorial experimental design as a means to investigate effects of climatic changes.......The potential impacts of interactions of multiple climate change factors in soil ecosystems have received little attention. Most studies have addressed effects of single factors such as increased temperature or atmospheric CO2 but little is known about how such environmental factors will interact....... In the present study we investigate the effects of in situ exposure to elevated atmospheric CO2 concentration, increased temperatures and prolonged drought episodes on field communities of Enchytraeidae (Oligochaeta) in a dry heathland (Brandbjerg, Denmark). Increased CO2 had a positive effect on enchytraeid...

  1. Composição da macrofauna do solo sob diferentes usos da terra (cana-de-açúcar, eucalipto e mata nativa em Jacutinga (MG

    Directory of Open Access Journals (Sweden)

    Lizandra de Fátima Martins

    2017-04-01

    com posterior triagem manual dos indivíduos. A identificação de cada grupo taxonômico foi baseada em características morfológicas. O solo para análise química foi coletado nos mesmos pontos de coleta da fauna. A menor riqueza de grupos foi encontrada na cana-de-açúcar, em comparação com o eucalipto e área de mata nativa. A Ordem Hymenoptera foi a mais abundante nas três áreas de estudo, representada principalmente por insetos da Família Formicidae. O resultado da Análise de Componentes Principais mostrou que Enchytraeidae e Oligochaeta associaram-se ao atributo umidade do solo na área de cana-de-açúcar. A Análise de Agrupamento mostrou que há uma separação espacial entre as áreas de estudos em que a mata nativa isolou-se das áreas de cana-de-açúcar e eucalipto. Os resultados obtidos neste trabalho demonstram que o uso da terra, principalmente o monocultivo como cana-de-açúcar, provoca uma diminuição na diversidade de invertebrados edáficos. Palavras-chave: Distância euclidiana. Ecologia do solo. Densidade de invertebrados. Alterações de ecossistemas.

  2. Species concepts, species delimitation and the inherent limitations

    Indian Academy of Sciences (India)

    Frank Zachos

    synchrony and to sexually reproducing organisms would not be a problem anymore ... approach to species delimitation that combines genetic data with .... The datasets or algorithms could then be modified so that the groups yielded conform.

  3. Genome Sequences of Oryza Species

    KAUST Repository

    Kumagai, Masahiko; Tanaka, Tsuyoshi; Ohyanagi, Hajime; Hsing, Yue-Ie C.; Itoh, Takeshi

    2018-01-01

    This chapter summarizes recent data obtained from genome sequencing, annotation projects, and studies on the genome diversity of Oryza sativa and related Oryza species. O. sativa, commonly known as Asian rice, is the first monocot species whose complete genome sequence was deciphered based on physical mapping by an international collaborative effort. This genome, along with its accurate and comprehensive annotation, has become an indispensable foundation for crop genomics and breeding. With the development of innovative sequencing technologies, genomic studies of O. sativa have dramatically increased; in particular, a large number of cultivars and wild accessions have been sequenced and compared with the reference rice genome. Since de novo genome sequencing has become cost-effective, the genome of African cultivated rice, O. glaberrima, has also been determined. Comparative genomic studies have highlighted the independent domestication processes of different rice species, but it also turned out that Asian and African rice share a common gene set that has experienced similar artificial selection. An international project aimed at constructing reference genomes and examining the genome diversity of wild Oryza species is currently underway, and the genomes of some species are publicly available. This project provides a platform for investigations such as the evolution, development, polyploidization, and improvement of crops. Studies on the genomic diversity of Oryza species, including wild species, should provide new insights to solve the problem of growing food demands in the face of rapid climatic changes.

  4. Genome Sequences of Oryza Species

    KAUST Repository

    Kumagai, Masahiko

    2018-02-14

    This chapter summarizes recent data obtained from genome sequencing, annotation projects, and studies on the genome diversity of Oryza sativa and related Oryza species. O. sativa, commonly known as Asian rice, is the first monocot species whose complete genome sequence was deciphered based on physical mapping by an international collaborative effort. This genome, along with its accurate and comprehensive annotation, has become an indispensable foundation for crop genomics and breeding. With the development of innovative sequencing technologies, genomic studies of O. sativa have dramatically increased; in particular, a large number of cultivars and wild accessions have been sequenced and compared with the reference rice genome. Since de novo genome sequencing has become cost-effective, the genome of African cultivated rice, O. glaberrima, has also been determined. Comparative genomic studies have highlighted the independent domestication processes of different rice species, but it also turned out that Asian and African rice share a common gene set that has experienced similar artificial selection. An international project aimed at constructing reference genomes and examining the genome diversity of wild Oryza species is currently underway, and the genomes of some species are publicly available. This project provides a platform for investigations such as the evolution, development, polyploidization, and improvement of crops. Studies on the genomic diversity of Oryza species, including wild species, should provide new insights to solve the problem of growing food demands in the face of rapid climatic changes.

  5. Species interactions and plant polyploidy.

    Science.gov (United States)

    Segraves, Kari A; Anneberg, Thomas J

    2016-07-01

    Polyploidy is a common mode of speciation that can have far-reaching consequences for plant ecology and evolution. Because polyploidy can induce an array of phenotypic changes, there can be cascading effects on interactions with other species. These interactions, in turn, can have reciprocal effects on polyploid plants, potentially impacting their establishment and persistence. Although there is a wealth of information on the genetic and phenotypic effects of polyploidy, the study of species interactions in polyploid plants remains a comparatively young field. Here we reviewed the available evidence for how polyploidy may impact many types of species interactions that range from mutualism to antagonism. Specifically, we focused on three main questions: (1) Does polyploidy directly cause the formation of novel interactions not experienced by diploids, or does it create an opportunity for natural selection to then form novel interactions? (2) Does polyploidy cause consistent, predictable changes in species interactions vs. the evolution of idiosyncratic differences? (3) Does polyploidy lead to greater evolvability in species interactions? From the scarce evidence available, we found that novel interactions are rare but that polyploidy can induce changes in pollinator, herbivore, and pathogen interactions. Although further tests are needed, it is likely that selection following whole-genome duplication is important in all types of species interaction and that there are circumstances in which polyploidy can enhance the evolvability of interactions with other species. © 2016 Botanical Society of America.

  6. Scale dependence in species turnover reflects variance in species occupancy.

    Science.gov (United States)

    McGlinn, Daniel J; Hurlbert, Allen H

    2012-02-01

    Patterns of species turnover may reflect the processes driving community dynamics across scales. While the majority of studies on species turnover have examined pairwise comparison metrics (e.g., the average Jaccard dissimilarity), it has been proposed that the species-area relationship (SAR) also offers insight into patterns of species turnover because these two patterns may be analytically linked. However, these previous links only apply in a special case where turnover is scale invariant, and we demonstrate across three different plant communities that over 90% of the pairwise turnover values are larger than expected based on scale-invariant predictions from the SAR. Furthermore, the degree of scale dependence in turnover was negatively related to the degree of variance in the occupancy frequency distribution (OFD). These findings suggest that species turnover diverges from scale invariance, and as such pairwise turnover and the slope of the SAR are not redundant. Furthermore, models developed to explain the OFD should be linked with those developed to explain species turnover to achieve a more unified understanding of community structure.

  7. Species-area relationships are controlled by species traits.

    Science.gov (United States)

    Franzén, Markus; Schweiger, Oliver; Betzholtz, Per-Eric

    2012-01-01

    The species-area relationship (SAR) is one of the most thoroughly investigated empirical relationships in ecology. Two theories have been proposed to explain SARs: classical island biogeography theory and niche theory. Classical island biogeography theory considers the processes of persistence, extinction, and colonization, whereas niche theory focuses on species requirements, such as habitat and resource use. Recent studies have called for the unification of these two theories to better explain the underlying mechanisms that generates SARs. In this context, species traits that can be related to each theory seem promising. Here we analyzed the SARs of butterfly and moth assemblages on islands differing in size and isolation. We tested whether species traits modify the SAR and the response to isolation. In addition to the expected overall effects on the area, traits related to each of the two theories increased the model fit, from 69% up to 90%. Steeper slopes have been shown to have a particularly higher sensitivity to area, which was indicated by species with restricted range (slope = 0.82), narrow dietary niche (slope= 0.59), low abundance (slope= 0.52), and low reproductive potential (slope = 0.51). We concluded that considering species traits by analyzing SARs yields considerable potential for unifying island biogeography theory and niche theory, and that the systematic and predictable effects observed when considering traits can help to guide conservation and management actions.

  8. Multiple mechanisms enable invasive species to suppress native species.

    Science.gov (United States)

    Bennett, Alison E; Thomsen, Meredith; Strauss, Sharon Y

    2011-07-01

    Invasive plants represent a significant threat to ecosystem biodiversity. To decrease the impacts of invasive species, a major scientific undertaking of the last few decades has been aimed at understanding the mechanisms that drive invasive plant success. Most studies and theories have focused on a single mechanism for predicting the success of invasive plants and therefore cannot provide insight as to the relative importance of multiple interactions in predicting invasive species' success. We examine four mechanisms that potentially contribute to the success of invasive velvetgrass Holcus lanatus: direct competition, indirect competition mediated by mammalian herbivores, interference competition via allelopathy, and indirect competition mediated by changes in the soil community. Using a combination of field and greenhouse approaches, we focus on the effects of H. lanatus on a common species in California coastal prairies, Erigeron glaucus, where the invasion is most intense. We found that H. lanatus had the strongest effects on E. glaucus via direct competition, but it also influenced the soil community in ways that feed back to negatively influence E. glaucus and other native species after H. lanatus removal. This approach provided evidence for multiple mechanisms contributing to negative effects of invasive species, and it identified when particular strategies were most likely to be important. These mechanisms can be applied to eradication of H. lanatus and conservation of California coastal prairie systems, and they illustrate the utility of an integrated set of experiments for determining the potential mechanisms of invasive species' success.

  9. Evolution of mutualism between species

    Energy Technology Data Exchange (ETDEWEB)

    Post, W.M.; Travis, C.C.; DeAngelis, D.L.

    1980-01-01

    Recent theoretical work on mutualism, the interaction between species populations that is mutually beneficial, is reviewed. Several ecological facts that should be addressed in the construction of dynamic models for mutualism are examined. Basic terminology is clarified. (PSB)

  10. Phase Two Protected Species Valuation

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Nonmarket valuation research has produced economic value estimates for a variety of threatened, endangered, and rare species around the world. Although over 40 value...

  11. 76 FR 1405 - Endangered Species

    Science.gov (United States)

    2011-01-10

    ... the understanding of the pelagic ecology of these species and allow more reliable assessments of... permit: (1) Was applied for in good faith, (2) will not operate to the disadvantage of such endangered or...

  12. Infrared spectra of mineral species

    CERN Document Server

    Chukanov, Nikita V

    2014-01-01

    This book details more than 3,000 IR spectra of more than 2,000 mineral species collected during last 30 years. It features full descriptions and analytical data of each sample for which IR spectrum was obtained.

  13. THE USE OF CASSAVA SPECIES

    African Journals Online (AJOL)

    User

    The plant is propagated from mature stems, which .... USE OF CASSAVA SPECIES AND ALUM IN WASTE WATER TREATMENT, .... acidity, total suspended solids, dissolved oxygen and ..... Rural Areas, MSc Thesis, Department of Water.

  14. Achromobacter species in cystic fibrosis

    DEFF Research Database (Denmark)

    Hansen, C R; Pressler, T; Ridderberg, W

    2013-01-01

    Achromobacter species leads to chronic infection in an increasing number of CF patients. We report 2 cases of Achromobacter ruhlandii cross-infection between patients after well-described indirect contact....

  15. Species Typing in Dermal Leishmaniasis

    Science.gov (United States)

    Dujardin, Jean-Claude

    2015-01-01

    SUMMARY Leishmania is an infectious protozoan parasite related to African and American trypanosomes. All Leishmania species that are pathogenic to humans can cause dermal disease. When one is confronted with cutaneous leishmaniasis, identification of the causative species is relevant in both clinical and epidemiological studies, case management, and control. This review gives an overview of the currently existing and most used assays for species discrimination, with a critical appraisal of the limitations of each technique. The consensus taxonomy for the genus is outlined, including debatable species designations. Finally, a numerical literature analysis is presented that describes which methods are most used in various countries and regions in the world, and for which purposes. PMID:25672782

  16. The Candida Pathogenic Species Complex

    Science.gov (United States)

    Turner, Siobhán A.; Butler, Geraldine

    2014-01-01

    Candida species are the most common causes of fungal infection. Approximately 90% of infections are caused by five species: Candida albicans, Candida glabrata, Candida tropicalis, Candida parapsilosis, and Candida krusei. Three (C. albicans, C. tropicalis, and C. parapsilosis) belong to the CTG clade, in which the CTG codon is translated as serine and not leucine. C. albicans remains the most commonly isolated but is decreasing relative to the other species. The increasing incidence of C. glabrata is related to its reduced susceptibility to azole drugs. Genome analysis suggests that virulence in the CTG clade is associated with expansion of gene families, particularly of cell wall genes. Similar independent processes took place in the C. glabrata species group. Gene loss and expansion in an ancestor of C. glabrata may have resulted in preadaptations that enabled pathogenicity. PMID:25183855

  17. Phase One Protected Species Valuation

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Nonmarket valuation research has produced economic value estimates for a variety of threatened, endangered, and rare species around the world. Although over 40 value...

  18. Theoretical microbial ecology without species

    Science.gov (United States)

    Tikhonov, Mikhail

    2017-09-01

    Ecosystems are commonly conceptualized as networks of interacting species. However, partitioning natural diversity of organisms into discrete units is notoriously problematic and mounting experimental evidence raises the intriguing question whether this perspective is appropriate for the microbial world. Here an alternative formalism is proposed that does not require postulating the existence of species as fundamental ecological variables and provides a naturally hierarchical description of community dynamics. This formalism allows approaching the species problem from the opposite direction. While the classical models treat a world of imperfectly clustered organism types as a perturbation around well-clustered species, the presented approach allows gradually adding structure to a fully disordered background. The relevance of this theoretical construct for describing highly diverse natural ecosystems is discussed.

  19. Species delimitation in the Stenocereus griseus (Cactaceae) species complex reveals a new species, S. huastecorum.

    Science.gov (United States)

    Alvarado-Sizzo, Hernán; Casas, Alejandro; Parra, Fabiola; Arreola-Nava, Hilda Julieta; Terrazas, Teresa; Sánchez, Cristian

    2018-01-01

    The Stenocereus griseus species complex (SGSC) has long been considered taxonomically challenging because the number of taxa belonging to the complex and their geographical boundaries remain poorly understood. Bayesian clustering and genetic distance-based methods were used based on nine microsatellite loci in 377 individuals of three main putative species of the complex. The resulting genetic clusters were assessed for ecological niche divergence and areolar morphology, particularly spination patterns. We based our species boundaries on concordance between genetic, ecological, and morphological data, and were able to resolve four species, three of them corresponding to S. pruinosus from central Mexico, S. laevigatus from southern Mexico, and S. griseus from northern South America. A fourth species, previously considered to be S. griseus and commonly misidentified as S. pruinosus in northern Mexico showed significant genetic, ecological, and morphological differentiation suggesting that it should be considered a new species, S. huastecorum, which we describe here. We show that population genetic analyses, ecological niche modeling, and morphological studies are complementary approaches for delimiting species in taxonomically challenging plant groups such as the SGSC.

  20. Species delimitation in the Stenocereus griseus (Cactaceae species complex reveals a new species, S. huastecorum.

    Directory of Open Access Journals (Sweden)

    Hernán Alvarado-Sizzo

    Full Text Available The Stenocereus griseus species complex (SGSC has long been considered taxonomically challenging because the number of taxa belonging to the complex and their geographical boundaries remain poorly understood. Bayesian clustering and genetic distance-based methods were used based on nine microsatellite loci in 377 individuals of three main putative species of the complex. The resulting genetic clusters were assessed for ecological niche divergence and areolar morphology, particularly spination patterns. We based our species boundaries on concordance between genetic, ecological, and morphological data, and were able to resolve four species, three of them corresponding to S. pruinosus from central Mexico, S. laevigatus from southern Mexico, and S. griseus from northern South America. A fourth species, previously considered to be S. griseus and commonly misidentified as S. pruinosus in northern Mexico showed significant genetic, ecological, and morphological differentiation suggesting that it should be considered a new species, S. huastecorum, which we describe here. We show that population genetic analyses, ecological niche modeling, and morphological studies are complementary approaches for delimiting species in taxonomically challenging plant groups such as the SGSC.

  1. Species selection for smallholder aquaculture

    OpenAIRE

    Brummett, R.E.

    1996-01-01

    Systems for selection of species for smallholder aquaculture are presented. These are: food fits; management decisions; and economic criteria. Food fits suggests categorizing pond food resources into a few categories based loosely on the instrinsic traits of food which effect their selectivity by predators. Using management decision techniques, potential polycultures might also be compared with each other and with monoculture. Under economic criteria (and for species known in local markets), ...

  2. Endangered Lilium Species of Turkey

    Directory of Open Access Journals (Sweden)

    Sevim Demir

    2018-01-01

    Full Text Available Turkey, which is among the major gene centers of the world and has a special place in plant genetic diversity. However, many plant genetic resources, including geophytes, are under genetic erosion because of the environmental and other problems and therefore face with the danger of extinction. Lilium ciliatum is endemic to North East Anatolia. IUCN (International Union for the Conservation of Natural Resources Red List Category of this species is Endangered (EN. Lilium ciliatum naturally grown in Zigana pass, Bayburt, Trabzon, Bulancak, Giresun and Gümüşhane is endangered and major threats of L. ciliatum are road construction and human disturbance related to ecotourism and recreation. It was reported that Lilium carniolicum naturally grown in Turkey is endangered although it isn’t in the IUCN Red List. Distribution areas of L. carniolicum are Trabzon, Rize, Artvin and it is also endemic to North East Anatolia. These species have high potential for use as ornamental plants with their colorful big flowers. In addition, the bulbs of these species are also used in the cosmetic industry and medicine. These are the main properties that increase the importance of L. ciliatum and L. carniolicum species. Therefore it is very important to protect the habitats of these species, ensure the continuity of their generations. The disappearance of these endemic species from our country means to disappear from the world. This review has been given in order to give some information about the endangered Lilium species of Turkey and conservation actions on these species in Turkey flora and take attention to the issue.

  3. Collective behaviour across animal species.

    Science.gov (United States)

    DeLellis, Pietro; Polverino, Giovanni; Ustuner, Gozde; Abaid, Nicole; Macrì, Simone; Bollt, Erik M; Porfiri, Maurizio

    2014-01-16

    We posit a new geometric perspective to define, detect, and classify inherent patterns of collective behaviour across a variety of animal species. We show that machine learning techniques, and specifically the isometric mapping algorithm, allow the identification and interpretation of different types of collective behaviour in five social animal species. These results offer a first glimpse at the transformative potential of machine learning for ethology, similar to its impact on robotics, where it enabled robots to recognize objects and navigate the environment.

  4. Thromboelastography in Selected Avian Species

    DEFF Research Database (Denmark)

    Andersen, Sophie Susanna Strindberg; Nielsen, Tenna W; Ribeiro, Ângela M

    2015-01-01

    Currently available assay methods and reagents are not optimized for evaluating avian hemostasis; therefore, assessing avian coagulopathies is challenging. Recently, thromboelastography (TEG), which measures the viscoelastic properties of blood, has been used clinically in mammalian species...... to diagnose and characterize hemostatic disorders. To evaluate TEG in healthy individuals of 6 avian species, we modified existing mammalian TEG protocols to allow analysis of citrated, avian whole-blood samples collected from scarlet ibis (Eudocimus ruber) (n = 13), American flamingos ( Phoenicopterus ruber...

  5. The nature of plant species.

    Science.gov (United States)

    Rieseberg, Loren H; Wood, Troy E; Baack, Eric J

    2006-03-23

    Many botanists doubt the existence of plant species, viewing them as arbitrary constructs of the human mind, as opposed to discrete, objective entities that represent reproductively independent lineages or 'units of evolution'. However, the discreteness of plant species and their correspondence with reproductive communities have not been tested quantitatively, allowing zoologists to argue that botanists have been overly influenced by a few 'botanical horror stories', such as dandelions, blackberries and oaks. Here we analyse phenetic and/or crossing relationships in over 400 genera of plants and animals. We show that although discrete phenotypic clusters exist in most genera (> 80%), the correspondence of taxonomic species to these clusters is poor (< 60%) and no different between plants and animals. Lack of congruence is caused by polyploidy, asexual reproduction and over-differentiation by taxonomists, but not by contemporary hybridization. Nonetheless, crossability data indicate that 70% of taxonomic species and 75% of phenotypic clusters in plants correspond to reproductively independent lineages (as measured by postmating isolation), and thus represent biologically real entities. Contrary to conventional wisdom, plant species are more likely than animal species to represent reproductively independent lineages.

  6. The Colletotrichum gloeosporioides species complex.

    Science.gov (United States)

    Weir, B S; Johnston, P R; Damm, U

    2012-09-15

    The limit of the Colletotrichum gloeosporioides species complex is defined genetically, based on a strongly supported clade within the Colletotrichum ITS gene tree. All taxa accepted within this clade are morphologically more or less typical of the broadly defined C. gloeosporioides, as it has been applied in the literature for the past 50 years. We accept 22 species plus one subspecies within the C. gloeosporioides complex. These include C. asianum, C. cordylinicola, C. fructicola, C. gloeosporioides, C. horii, C. kahawae subsp. kahawae, C. musae, C. nupharicola, C. psidii, C. siamense, C. theobromicola, C. tropicale, and C. xanthorrhoeae, along with the taxa described here as new, C. aenigma, C. aeschynomenes, C. alatae, C. alienum, C. aotearoa, C. clidemiae, C. kahawae subsp. ciggaro, C. salsolae, and C. ti, plus the nom. nov. C. queenslandicum (for C. gloeosporioides var. minus). All of the taxa are defined genetically on the basis of multi-gene phylogenies. Brief morphological descriptions are provided for species where no modern description is available. Many of the species are unable to be reliably distinguished using ITS, the official barcoding gene for fungi. Particularly problematic are a set of species genetically close to C. musae and another set of species genetically close to C. kahawae, referred to here as the Musae clade and the Kahawae clade, respectively. Each clade contains several species that are phylogenetically well supported in multi-gene analyses, but within the clades branch lengths are short because of the small number of phylogenetically informative characters, and in a few cases individual gene trees are incongruent. Some single genes or combinations of genes, such as glyceraldehyde-3-phosphate dehydrogenase and glutamine synthetase, can be used to reliably distinguish most taxa and will need to be developed as secondary barcodes for species level identification, which is important because many of these fungi are of biosecurity

  7. Terrestrial animals as invasive species and as species at risk from invasions

    Science.gov (United States)

    Deborah M. Finch; Dean Pearson; Joseph Wunderle; Wayne Arendt

    2010-01-01

    Including terrestrial animal species in the invasive species strategy plan is an important step in invasive species management. Invasions by nonindigenous species threaten nearly 50 percent of imperiled native species in the United States and are the Nation's second leading cause of species endangerment. Invasion and conversion of native habitats by exotic species...

  8. Malassezia Species and Pityriasis Versicolor

    Directory of Open Access Journals (Sweden)

    Gulin Rodoplu

    2016-01-01

    Full Text Available Malassezia species are found in part of the normal human cutaneous commensal flora, however it has been known for many years that the Malassezia yeasts are associated with a number of different human diseases ranging from pityriasis versicolor to seborrhoeic dermatitis. In addition, since the 1980s, they have been reported as causing opportunistic systemic infections. The taxonomy of Malassezia spp. has recently been modified to include 13 obligatorily lipophilic species, plus one non-obligatorily lipophilic species, which only rarely colonizes human hosts and currently the genus consist 14 species as M. furfur, M. pachydermatis, M. sympodialis, M. globosa, M. obtusa, M. slooffiae, M. restricta, M. dermatis, M. japonica, M. nana, M. yamatoensis, M. caprae, M. equina, M. cuniculi. Fastidious growth requirements of Malassezia yeasts defied the initial attempts to culture these organisms and their true identification and the relationship between different species only became apparent with the application of modern molecular techniques. The causative fungus is seen especially in such seborrheic areas as the scalp, face, trunk and upper back. Under the influence of various exogenous or endogenous predisposing factors, these yeasts change from the blastospore form to the mycelial form and become pathogenic. Diagnosis of pityriasis versicolor which is caused by Malassezia species is generally easy and lies on the basis of its clinical appearance and can be confirmed by mycological examination. The diagnosisis is mainly based on direct examination with potassium hydroxide (KOH and demonstration that represents pseudohyphae and blastoconidia as the typical %u201Cspaghetti and meatballs%u201D pattern. Characteristic features of the genus Malassezia include a distinctive morphology and an affinity for lipids in culture. Culture is necessary to recover the infecting strain, especially for epidemiologic purposes and also to test its antifungal susceptibility

  9. Phenotypic covariance at species' borders.

    Science.gov (United States)

    Caley, M Julian; Cripps, Edward; Game, Edward T

    2013-05-28

    Understanding the evolution of species limits is important in ecology, evolution, and conservation biology. Despite its likely importance in the evolution of these limits, little is known about phenotypic covariance in geographically marginal populations, and the degree to which it constrains, or facilitates, responses to selection. We investigated phenotypic covariance in morphological traits at species' borders by comparing phenotypic covariance matrices (P), including the degree of shared structure, the distribution of strengths of pair-wise correlations between traits, the degree of morphological integration of traits, and the ranks of matricies, between central and marginal populations of three species-pairs of coral reef fishes. Greater structural differences in P were observed between populations close to range margins and conspecific populations toward range centres, than between pairs of conspecific populations that were both more centrally located within their ranges. Approximately 80% of all pair-wise trait correlations within populations were greater in the north, but these differences were unrelated to the position of the sampled population with respect to the geographic range of the species. Neither the degree of morphological integration, nor ranks of P, indicated greater evolutionary constraint at range edges. Characteristics of P observed here provide no support for constraint contributing to the formation of these species' borders, but may instead reflect structural change in P caused by selection or drift, and their potential to evolve in the future.

  10. INMUNOTOXICIDAD DE MALATIÓN Y CLORPIRIFOS EN LA LOMBRIZ DE TIERRA Eisenia sp. (ANNELIDA: OLIGOCHAETA | IMMUNOTOXICITY OF MALATHION AND CHLORPYRIFOS IN THE EARTHWORM Eisenia sp. (ANNELIDA: OLIGOCHAETA

    Directory of Open Access Journals (Sweden)

    Carmen Cortesia

    2015-11-01

    Full Text Available The effects of malathion and chlorpyrifos on immune responses of Eisenia sp. were assessed using standard toxicity assays. In plastic containers with natural soils as substrate, mature sexually earthworms were exposed to malathion (300 mg kg-1of soil and chlorpyrifos (300 mg kg-1of soil during 7 and 21 days. After exposure periods, cellular viability, total number of coelomocytes (NTC, percentage of phagocytic cells (PCF, lysozyme activity and hemolytic percentage were determined. Malathion and chlorpyrifos exposures caused a significant decrease in NTC, lysozyme and hemolytic activities, but these variables were not affected by time of exposure. PCF declined in earthworms exposed to both pesticides; this decline was dependent of the time-exposure. The results suggest an immunotoxic action of both agrochemicals on humoral and cellular immune responses of Eisenia sp., which could intensify the detrimental effects caused by biotic stressors, such as pathogens microrganisms that live in the soil. The immune responses mediated by the coelocmocytes of Eisenia sp. evaluated in this study were negatively affected by malathion and chlorpyrifos, demonstrating their sensitivity as potential biomarkers useful in early detection of environmental impact by organophosphate pesticides.

  11. Efectos subletales de la lambda-cialotrina sobre Eisenia fetida (Annelida, Oligochaeta, Lumbricidae) Sublethal effects of lambda-cyhalothrin on Eisenia fetida (Annelida, Oligochaeta, Lumbricidae)

    OpenAIRE

    Tamara Ricardo; Maria Inés Maitre; Alba Rut Rodríguez

    2010-01-01

    El uso intensivo de agroquímicos provoca efectos dañinos sobre la fauna no blanco. Dentro de la misma, los oligoquetos contribuyen a mantener la estructura y fertilidad del suelo. La lambda-cialotrina es uno de los insecticidas piretroides más utilizados en la Argentina, pero son escasos los datos existentes acerca de su toxicidad sobre oligoquetos. Los objetivos de este trabajo fueron evaluar mediante bioensayos de toxicidad crónica los efectos de lambda-cialotrina (producto comercial al 5%)...

  12. Efectos subletales de la lambda-cialotrina sobre Eisenia fetida (Annelida, Oligochaeta, Lumbricidae Sublethal effects of lambda-cyhalothrin on Eisenia fetida (Annelida, Oligochaeta, Lumbricidae

    Directory of Open Access Journals (Sweden)

    Tamara Ricardo

    2010-07-01

    Full Text Available El uso intensivo de agroquímicos provoca efectos dañinos sobre la fauna no blanco. Dentro de la misma, los oligoquetos contribuyen a mantener la estructura y fertilidad del suelo. La lambda-cialotrina es uno de los insecticidas piretroides más utilizados en la Argentina, pero son escasos los datos existentes acerca de su toxicidad sobre oligoquetos. Los objetivos de este trabajo fueron evaluar mediante bioensayos de toxicidad crónica los efectos de lambda-cialotrina (producto comercial al 5% en Eisenia fetida sobre los parámetros de comportamiento, sobrevivencia, biomasa, reproducción y bioacumulación, así como la persistencia en suelo OECD de dicho tóxico. Los resultados muestran un comportamiento de huída intenso a partir de la concentración más baja, con un EC50 de 1,36 mg kg-1 (95% C.L. 0,24 - 2,80. No se observaron efectos en sobrevivencia y alimentación. La reproducción fue afectada significativamente (F= 11,94, PThe intensive use of agrochemicals has deleterious effects on non-target organisms. Among these organisms, earthworms are important because of their role in keeping the soil structure and fertility. Lambda-cyhalothrin is one of the most widely used pyrethroid insecticide in Argentina, but there are not enough studies of the effects of this pesticide on earthworms. The goals of this work were to perform chronic toxicity bioassays to determine the effects of commercial lambda-cyhalothrin (at 5% on Eisenia fetida. The parameters of behaviour, survival, biomass, reproduction, bioaccumulation and the degradation time of lambda-cyhalotrin in an OECD standard soil were also estimated. Results showed a hard avoidance behaviour in the lowest lambda-cyhalothrin concentration with an EC50 of 1.36 mg kg-1 (95% C.L 0.24-2.80. Eisenia fetida chronic test survival and feeding were not affected by lambda-cyhalothrin but negative effects on reproduction were significant (P<0.05. Cocoon production and fertility were reduced and incubation time was incremented. The BAF were between 0.005 and 0.08 in the test concentrations and the soil degradation of lambda-cyhalothrin was complete after 86 days.

  13. Aspergillus fumigatus and Related Species

    Science.gov (United States)

    Sugui, Janyce A.; Kwon-Chung, Kyung J.; Juvvadi, Praveen R.; Latgé, Jean-Paul; Steinbach, William J.

    2015-01-01

    The genus Aspergillus contains etiologic agents of aspergillosis. The clinical manifestations of the disease range from allergic reaction to invasive pulmonary infection. Among the pathogenic aspergilli, Aspergillus fumigatus is most ubiquitous in the environment and is the major cause of the disease, followed by Aspergillus flavus, Aspergillus niger, Aspergillus terreus, Aspergillus nidulans, and several species in the section Fumigati that morphologically resemble A. fumigatus. Patients that are at risk for acquiring aspergillosis are those with an altered immune system. Early diagnosis, species identification, and adequate antifungal therapy are key elements for treatment of the disease, especially in cases of pulmonary invasive aspergillosis that often advance very rapidly. Incorporating knowledge of the basic biology of Aspergillus species to that of the diseases that they cause is fundamental for further progress in the field. PMID:25377144

  14. What is a Species? An Endless Debate

    Indian Academy of Sciences (India)

    Srimath

    a research scholar in ... perspectives are collectively termed as Phylogenetic Species ... tors view the origin of the species they study”. ..... explosion of molecular data has been the major driving force in unearthing cryptic species, it is no ...

  15. Vegetation composition and structure influences bird species ...

    African Journals Online (AJOL)

    Vegetation composition and structure influences bird species community ... variables on bird species diversity and richness of respective foraging guilds, and ... of the species assessed: (1) increasing closed cover due to woody plant density, ...

  16. Alien species recorded in the United Arab Emirates: an initial list of terrestrial and freshwater species

    Directory of Open Access Journals (Sweden)

    Pritpal Soorae

    2015-10-01

    Full Text Available Little is documented on the alien terrestrial and freshwater species in the United Arab Emirates. To address this, an assessment of terrestrial and freshwater alien species was conducted using various techniques such as a questionnaire, fieldwork data, networking with relevant people, and a detailed literature review. The results of the initial assessment show that there are 146 alien species recorded in the following seven major taxonomic groups: invertebrates 49 species, freshwater fish five species, amphibian one species, reptiles six species, birds 71 species, mammals six species and plants eight species. To inform decision makers a full list of the 146 species identified in this assessment is presented. 

  17. Man...An Endangered Species?

    Science.gov (United States)

    Department of the Interior, Washington, DC.

    The general theme of this 1968 yearbook is that man is a threatened species, facing overpopulation and unbridled technology - both self induced. The presentation is broad, relating to many aspects of conservation and natural resources in the United States in a descriptive, non-technical style. The yearbook is divided into major topics: Land…

  18. Phylogenetic relationships among Maloideae species

    Science.gov (United States)

    The Maloideae is a highly diverse sub-family of the Rosaceae containing several agronomically important species (Malus sp. and Pyrus sp.) and their wild relatives. Previous phylogenetic work within the group has revealed extensive intergeneric hybridization and polyploidization. In order to develop...

  19. Botrytis species on bulb crops

    NARCIS (Netherlands)

    Lorbeer, J.W.; Seyb, A.M.; Boer, de M.; Ende, van den J.E.

    2007-01-01

    Abstract. A number of Botrytis species are pathogens of bulb crops. Botrytis squamosa (teleomorph=Botrytotinia squamosa) causal agent of botrytis leaf blight and B. allii the causal agent of botrytis neck rotare two of the most important fungal diseases of onion. The taxonomics of several of the

  20. Endangered Species: An Educator's Handbook.

    Science.gov (United States)

    Smith, Jean, M., Comp.

    Presented are two articles, an annotated bibliography, and other information useful in teaching about endangered species, especially those found in Florida. The articles provide an ethical rationale, teaching suggestions, and a discussion of the value of wildlife. Descriptions of over 100 pertinent books, periodicals, movies, and filmstrips are in…

  1. Molecular Epidemiology of Fonsecaea Species

    NARCIS (Netherlands)

    Najafzadeh, M.J.; Sun, J.; Vicente, V.A.; Klaassen, C.H.W.; Bonifaz, A.; Gerrits van den Ende, A.H.G.; Menken, S.B.J.; de Hoog, G.S.

    2011-01-01

    To assess population diversities among 81 strains of fungi in the genus Fonsecaea that had been identified down to species level, we applied amplified fragment-length polymorphism (AFLP) technology and sequenced the internal transcribed spacer regions and the partial cell division cycle, β-tubulin,

  2. SARS – virus jumps species

    Indian Academy of Sciences (India)

    SARS – virus jumps species. Coronavirus reshuffles genes; Rotteir et al, Rotterdam showed the virus to jump from cats to mouse cells after single gene mutation ? Human disease due to virus jumping from wild or domestic animals; Present favourite animal - the cat; - edible or domestic.

  3. Species recovery in the United States: Increasing the effectiveness of the Endangered Species Act

    Science.gov (United States)

    Daniel M. Evans; Judy P. Che-Castaldo; Deborah Crouse; Frank W. Davis; Rebecca Epanchin-Niell; Curtis H. Flather; R. Kipp Frohlich; Dale D. Goble; Ya-Wei Li; Timothy D. Male; Lawrence L. Master; Matthew P. Moskwik; Maile C. Neel; Barry R. Noon; Camille Parmesan; Mark W. Schwartz; J. Michael Scott; Byron K. Williams

    2016-01-01

    The Endangered Species Act (ESA) has succeeded in shielding hundreds of species from extinction and improving species recovery over time. However, recovery for most species officially protected by the ESA - i.e., listed species - has been harder to achieve than initially envisioned. Threats to species are persistent and pervasive, funding has been insufficient...

  4. Optimal conservation of migratory species.

    Directory of Open Access Journals (Sweden)

    Tara G Martin

    Full Text Available BACKGROUND: Migratory animals comprise a significant portion of biodiversity worldwide with annual investment for their conservation exceeding several billion dollars. Designing effective conservation plans presents enormous challenges. Migratory species are influenced by multiple events across land and sea-regions that are often separated by thousands of kilometres and span international borders. To date, conservation strategies for migratory species fail to take into account how migratory animals are spatially connected between different periods of the annual cycle (i.e. migratory connectivity bringing into question the utility and efficiency of current conservation efforts. METHODOLOGY/PRINCIPAL FINDINGS: Here, we report the first framework for determining an optimal conservation strategy for a migratory species. Employing a decision theoretic approach using dynamic optimization, we address the problem of how to allocate resources for habitat conservation for a Neotropical-Nearctic migratory bird, the American redstart Setophaga ruticilla, whose winter habitat is under threat. Our first conservation strategy used the acquisition of winter habitat based on land cost, relative bird density, and the rate of habitat loss to maximize the abundance of birds on the wintering grounds. Our second strategy maximized bird abundance across the entire range of the species by adding the constraint of maintaining a minimum percentage of birds within each breeding region in North America using information on migratory connectivity as estimated from stable-hydrogen isotopes in feathers. We show that failure to take into account migratory connectivity may doom some regional populations to extinction, whereas including information on migratory connectivity results in the protection of the species across its entire range. CONCLUSIONS/SIGNIFICANCE: We demonstrate that conservation strategies for migratory animals depend critically upon two factors: knowledge of

  5. Synopsis of the Oxyethira flavicornis species group with new Japanese Oxyethira species (Trichoptera, Hydroptilidae

    Directory of Open Access Journals (Sweden)

    Oláh, J.

    2013-06-01

    Full Text Available A brief synopsis of the Oxyethira flavicornis species group is produced by the examination of type materials. Diagrammatic drawings with similar style were prepared for all the known and for the new species. Short description of genus Oxyethira, subgenus Oxyethira, species group of Oxyethira flavicornis are presented together with the description of five species clusters: O. datra new species cluster, O. ecornuta new species cluster, O. flavicornis new species cluster, O. hiroshima new species cluster, O. tiunovae new species cluster. Five new species are described from the O. flavicornis species group: O chitosea sp. n., O. hena sp. n., O. hiroshima sp. n., O. kakida sp. n., O. mekunna sp. n. One new species is described from the Oxyethira grisea species group: Oxyethira ozea sp. n. and two new species from the Oxyethira ramosa species group: Oxyethira miea sp. n., Oxyethira okinawa sp. n.

  6. Floral reward in Ranunculaceae species

    Directory of Open Access Journals (Sweden)

    Bożena Denisow

    2016-04-01

    Full Text Available Floral reward is important in ecological and evolutionary perspectives and essential in pollination biology. For example, floral traits, nectar and pollen features are essential for understanding the functional ecology, the dynamics of pollen transport, competition for pollinator services, and patterns of specialization and generalization in plant–pollinator interactions. We believe to present a synthetic description in the field of floral reward in Ranunculaceae family important in pollination biology and indicating connections between ecological and evolutionary approaches. The links between insect visitors’ behaviour and floral reward type and characteristics exist. Ranunculaceae is a family of aboot 1700 species (aboot 60 genera, distributed worldwide, however the most abundant representatives are in temperate and cool regions of the northern and southern hemispheres. The flowers are usually radially symmetric (zygomorphic and bisexual, but in Aconitum, Aquilegia are bilaterally symmetric (zygomorphic. Most Ranunculaceae flowers offer no nectar, only pollen (e.g., Ranunculus, Adonis vernalis, Thalictrum, but numerous species create trophic niches for different wild pollinators (e.g. Osmia, Megachile, Bombus, Andrena (Denisow et al. 2008. Pollen is a source of protein, vitamins, mineral salts, organic acids and hormones, but the nutritional value varies greatly between different plant species. The pollen production can differ significantly between Ranunculacea species. The mass of pollen produced in anthers differ due to variations in the number of developed anthers. For example, interspecies differences are considerable, 49 anthers are noted in Aquilegia vulgaris, 70 anthers in Ranunculus lanuginosus, 120 in Adonis vernalis. A significant intra-species differences’ in the number of anthers are also noted (e.g. 41 to 61 in Aquilegia vulgaris, 23-45 in Ranunculus cassubicus. Pollen production can be up to 62 kg per ha for Ranunculus acer

  7. ICRAF Species Switchboard. Version 1.2

    DEFF Research Database (Denmark)

    Kindt, R.; Ordonez, J.; Smith, E.

    2015-01-01

    The current version of the Agroforestry Species Switchboard documents the presence of a total of 26,135 plant species (33,813 species including synonyms) across 19 web-based databases. When available, hyperlinks to information on the selected species in particular databases are provided. In total...

  8. Ranking species in mutualistic networks

    Science.gov (United States)

    Domínguez-García, Virginia; Muñoz, Miguel A.

    2015-02-01

    Understanding the architectural subtleties of ecological networks, believed to confer them enhanced stability and robustness, is a subject of outmost relevance. Mutualistic interactions have been profusely studied and their corresponding bipartite networks, such as plant-pollinator networks, have been reported to exhibit a characteristic ``nested'' structure. Assessing the importance of any given species in mutualistic networks is a key task when evaluating extinction risks and possible cascade effects. Inspired in a recently introduced algorithm -similar in spirit to Google's PageRank but with a built-in non-linearity- here we propose a method which -by exploiting their nested architecture- allows us to derive a sound ranking of species importance in mutualistic networks. This method clearly outperforms other existing ranking schemes and can become very useful for ecosystem management and biodiversity preservation, where decisions on what aspects of ecosystems to explicitly protect need to be made.

  9. Competitive intransitivity promotes species coexistence.

    Science.gov (United States)

    Laird, Robert A; Schamp, Brandon S

    2006-08-01

    Using a spatially explicit cellular automaton model with local competition, we investigate the potential for varied levels of competitive intransitivity (i.e., nonhierarchical competition) to promote species coexistence. As predicted, on average, increased levels of intransitivity result in more sustained coexistence within simulated communities, although the outcome of competition also becomes increasingly unpredictable. Interestingly, even a moderate degree of intransitivity within a community can promote coexistence, in terms of both the length of time until the first competitive exclusion and the number of species remaining in the community after 500 simulated generations. These results suggest that modest levels of intransitivity in nature, such as those that are thought to be characteristic of plant communities, can contribute to coexistence and, therefore, community-scale biodiversity. We explore a potential connection between competitive intransitivity and neutral theory, whereby competitive intransitivity may represent an important mechanism for "ecological equivalence."

  10. Charcoal anatomy of forest species

    Directory of Open Access Journals (Sweden)

    Graciela Inés Bolzon de Muñiz1

    2012-09-01

    Full Text Available Vegetal charcoal retains the anatomical structure of the wood and may permit its botanical identification, which depends on species characteristics, the charcoal fragments size and preservation state. Anatomical characterization of ten forest species charcoal was done envisaging the identification and control of illegal charcoal. Differences between gymnosperms and angiosperms are evident in carbonized wood. Vessel diameter was statistically different between wood and charcoal in Vatairea guianensis, Mezilaurus itauba, Calophyllum brasiliense e Qualea cf. acuminata, and vessel frequency in Vatairea guianensis, Manilkara huberi, Qualea cf. acuminata e Simarouba amara. The anatomical structure from wood, in general aspects, is constant during carbonization process using temperature of 450°C, being possible to identify the material by using its cellular components.

  11. Population Genomics of Paramecium Species.

    Science.gov (United States)

    Johri, Parul; Krenek, Sascha; Marinov, Georgi K; Doak, Thomas G; Berendonk, Thomas U; Lynch, Michael

    2017-05-01

    Population-genomic analyses are essential to understanding factors shaping genomic variation and lineage-specific sequence constraints. The dearth of such analyses for unicellular eukaryotes prompted us to assess genomic variation in Paramecium, one of the most well-studied ciliate genera. The Paramecium aurelia complex consists of ∼15 morphologically indistinguishable species that diverged subsequent to two rounds of whole-genome duplications (WGDs, as long as 320 MYA) and possess extremely streamlined genomes. We examine patterns of both nuclear and mitochondrial polymorphism, by sequencing whole genomes of 10-13 worldwide isolates of each of three species belonging to the P. aurelia complex: P. tetraurelia, P. biaurelia, P. sexaurelia, as well as two outgroup species that do not share the WGDs: P. caudatum and P. multimicronucleatum. An apparent absence of global geographic population structure suggests continuous or recent dispersal of Paramecium over long distances. Intergenic regions are highly constrained relative to coding sequences, especially in P. caudatum and P. multimicronucleatum that have shorter intergenic distances. Sequence diversity and divergence are reduced up to ∼100-150 bp both upstream and downstream of genes, suggesting strong constraints imposed by the presence of densely packed regulatory modules. In addition, comparison of sequence variation at non-synonymous and synonymous sites suggests similar recent selective pressures on paralogs within and orthologs across the deeply diverging species. This study presents the first genome-wide population-genomic analysis in ciliates and provides a valuable resource for future studies in evolutionary and functional genetics in Paramecium. © The Author 2017. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

  12. Haemolytic glycoglycerolipids from Gymnodinium species.

    Science.gov (United States)

    Parrish, C C; Bodennec, G; Gentien, P

    1998-03-01

    Glycoglycerolipids derived from microalgae can be a source of biologically active substances including toxins. Such glycolipids were analysed in two isolates of toxic marine dinoflagellates from European waters. The lipids of Gymnodinium mikimotoi contained 17% of monogalactosyl diacylglycerol (MGDG) and digalactosyl diacylglycerol (DGDG), while in Gymnodinium sp. the proportion was 35%. MGDG and DGDG from both species were haemolytic. The major unsaturated fatty acid in both algal glycolipids was 18:5 omega 3.

  13. Chemokines in teleost fish species.

    Science.gov (United States)

    Alejo, Alí; Tafalla, Carolina

    2011-12-01

    Chemokines are chemoattractant cytokines defined by the presence of four conserved cysteine residues which in mammals can be divided into four subfamilies depending on the arrangement of the first two conserved cysteines in their sequence: CXC (α), CC (β), C and CX(3)C classes. Evolutionarily, fish can be considered as an intermediate step between species which possess only innate immunity (invertebrates) and species with a fully developed acquired immune network such as mammals. Therefore, the functionality of their different immune cell types and molecules is sometimes also intermediate between innate and acquired responses. The first chemokine gene identified in a teleost was a rainbow trout (Oncorhynchus mykiss) chemokine designated as CK1 in 1998. Since then, many different chemokine genes have been identified in several fish species, but their role in homeostasis and immune response remains largely unknown. Extensive genomic duplication events and the fact that chemokines evolve more quickly than other immune genes, make it very difficult to establish true orthologues between fish and mammalian chemokines that would help us with the ascription of immune roles. In this review, we describe the current state of knowledge of chemokine biology in teleost fish, focusing mainly on which genes have been identified so far and highlighting the most important aspects of their expression regulation, due to the great lack of functional information available for them. As the number of chemokine genes begins to close down for some teleost species, there is an important need for functional assays that may elucidate the role of each of these molecules within the fish immune response. Copyright © 2011 Elsevier Ltd. All rights reserved.

  14. Candida Species Biofilms’ Antifungal Resistance

    Science.gov (United States)

    Silva, Sónia; Rodrigues, Célia F.; Araújo, Daniela; Rodrigues, Maria Elisa; Henriques, Mariana

    2017-01-01

    Candida infections (candidiasis) are the most prevalent opportunistic fungal infection on humans and, as such, a major public health problem. In recent decades, candidiasis has been associated to Candida species other than Candida albicans. Moreover, biofilms have been considered the most prevalent growth form of Candida cells and a strong causative agent of the intensification of antifungal resistance. As yet, no specific resistance factor has been identified as the sole responsible for the increased recalcitrance to antifungal agents exhibited by biofilms. Instead, biofilm antifungal resistance is a complex multifactorial phenomenon, which still remains to be fully elucidated and understood. The different mechanisms, which may be responsible for the intrinsic resistance of Candida species biofilms, include the high density of cells within the biofilm, the growth and nutrient limitation, the effects of the biofilm matrix, the presence of persister cells, the antifungal resistance gene expression and the increase of sterols on the membrane of biofilm cells. Thus, this review intends to provide information on the recent advances about Candida species biofilm antifungal resistance and its implication on intensification of the candidiasis. PMID:29371527

  15. Linking Keystone Species and Functional Groups: A New Operational Definition of the Keystone Species Concept

    OpenAIRE

    Robert D. Davic

    2003-01-01

    The concept of the "keystone species" is redefined to allow for the a priori prediction of these species within ecosystems. A keystone species is held to be a strongly interacting species whose top-down effect on species diversity and competition is large relative to its biomass dominance within a functional group. This operational definition links the community importance of keystone species to a specific ecosystem process, e.g., the regulation of species diversity, within functional groups ...

  16. Community structure informs species geographic distributions

    KAUST Repository

    Montesinos-Navarro, Alicia

    2018-05-23

    Understanding what determines species\\' geographic distributions is crucial for assessing global change threats to biodiversity. Measuring limits on distributions is usually, and necessarily, done with data at large geographic extents and coarse spatial resolution. However, survival of individuals is determined by processes that happen at small spatial scales. The relative abundance of coexisting species (i.e. \\'community structure\\') reflects assembly processes occurring at small scales, and are often available for relatively extensive areas, so could be useful for explaining species distributions. We demonstrate that Bayesian Network Inference (BNI) can overcome several challenges to including community structure into studies of species distributions, despite having been little used to date. We hypothesized that the relative abundance of coexisting species can improve predictions of species distributions. In 1570 assemblages of 68 Mediterranean woody plant species we used BNI to incorporate community structure into Species Distribution Models (SDMs), alongside environmental information. Information on species associations improved SDM predictions of community structure and species distributions moderately, though for some habitat specialists the deviance explained increased by up to 15%. We demonstrate that most species associations (95%) were positive and occurred between species with ecologically similar traits. This suggests that SDM improvement could be because species co-occurrences are a proxy for local ecological processes. Our study shows that Bayesian Networks, when interpreted carefully, can be used to include local conditions into measurements of species\\' large-scale distributions, and this information can improve the predictions of species distributions.

  17. Alien species in the Finnish weed flora

    Directory of Open Access Journals (Sweden)

    T. HYVÖNEN

    2008-12-01

    Full Text Available The present study aimed at assessing the invasion of alien weed species in Finland based on a review of their occurrence in the Finnish weed flora. The evaluation was conducted for the three phases of the invasion process, i.e. introduction, naturalization and invasion. The literature review revealed that 815 alien weed species occur in Finland of which 314 are regarded as naturalized. Based on their occurrence in different climate zones, the risk of naturalization of new harmful alien weed species was deemed low for those species not currently found in Finland, but higher for species occurring as casual aliens in Finland. In the latter group, 10 species of concern were detected. Exploration of the distribution patterns of naturalized species within Finland revealed species occupancy to be dependent on the residence time of the species. Established neophytes can be expected to extend their ranges and to increase occupation of agricultural habitats in the future.;

  18. Natural Constraints to Species Diversification.

    Directory of Open Access Journals (Sweden)

    Eric Lewitus

    2016-08-01

    Full Text Available Identifying modes of species diversification is fundamental to our understanding of how biodiversity changes over evolutionary time. Diversification modes are captured in species phylogenies, but characterizing the landscape of diversification has been limited by the analytical tools available for directly comparing phylogenetic trees of groups of organisms. Here, we use a novel, non-parametric approach and 214 family-level phylogenies of vertebrates representing over 500 million years of evolution to identify major diversification modes, to characterize phylogenetic space, and to evaluate the bounds and central tendencies of species diversification. We identify five principal patterns of diversification to which all vertebrate families hold. These patterns, mapped onto multidimensional space, constitute a phylogenetic space with distinct properties. Firstly, phylogenetic space occupies only a portion of all possible tree space, showing family-level phylogenies to be constrained to a limited range of diversification patterns. Secondly, the geometry of phylogenetic space is delimited by quantifiable trade-offs in tree size and the heterogeneity and stem-to-tip distribution of branching events. These trade-offs are indicative of the instability of certain diversification patterns and effectively bound speciation rates (for successful clades within upper and lower limits. Finally, both the constrained range and geometry of phylogenetic space are established by the differential effects of macroevolutionary processes on patterns of diversification. Given these properties, we show that the average path through phylogenetic space over evolutionary time traverses several diversification stages, each of which is defined by a different principal pattern of diversification and directed by a different macroevolutionary process. The identification of universal patterns and natural constraints to diversification provides a foundation for understanding the

  19. Natural Constraints to Species Diversification.

    Science.gov (United States)

    Lewitus, Eric; Morlon, Hélène

    2016-08-01

    Identifying modes of species diversification is fundamental to our understanding of how biodiversity changes over evolutionary time. Diversification modes are captured in species phylogenies, but characterizing the landscape of diversification has been limited by the analytical tools available for directly comparing phylogenetic trees of groups of organisms. Here, we use a novel, non-parametric approach and 214 family-level phylogenies of vertebrates representing over 500 million years of evolution to identify major diversification modes, to characterize phylogenetic space, and to evaluate the bounds and central tendencies of species diversification. We identify five principal patterns of diversification to which all vertebrate families hold. These patterns, mapped onto multidimensional space, constitute a phylogenetic space with distinct properties. Firstly, phylogenetic space occupies only a portion of all possible tree space, showing family-level phylogenies to be constrained to a limited range of diversification patterns. Secondly, the geometry of phylogenetic space is delimited by quantifiable trade-offs in tree size and the heterogeneity and stem-to-tip distribution of branching events. These trade-offs are indicative of the instability of certain diversification patterns and effectively bound speciation rates (for successful clades) within upper and lower limits. Finally, both the constrained range and geometry of phylogenetic space are established by the differential effects of macroevolutionary processes on patterns of diversification. Given these properties, we show that the average path through phylogenetic space over evolutionary time traverses several diversification stages, each of which is defined by a different principal pattern of diversification and directed by a different macroevolutionary process. The identification of universal patterns and natural constraints to diversification provides a foundation for understanding the deep-time evolution of

  20. Natural Constraints to Species Diversification

    Science.gov (United States)

    Lewitus, Eric; Morlon, Hélène

    2016-01-01

    Identifying modes of species diversification is fundamental to our understanding of how biodiversity changes over evolutionary time. Diversification modes are captured in species phylogenies, but characterizing the landscape of diversification has been limited by the analytical tools available for directly comparing phylogenetic trees of groups of organisms. Here, we use a novel, non-parametric approach and 214 family-level phylogenies of vertebrates representing over 500 million years of evolution to identify major diversification modes, to characterize phylogenetic space, and to evaluate the bounds and central tendencies of species diversification. We identify five principal patterns of diversification to which all vertebrate families hold. These patterns, mapped onto multidimensional space, constitute a phylogenetic space with distinct properties. Firstly, phylogenetic space occupies only a portion of all possible tree space, showing family-level phylogenies to be constrained to a limited range of diversification patterns. Secondly, the geometry of phylogenetic space is delimited by quantifiable trade-offs in tree size and the heterogeneity and stem-to-tip distribution of branching events. These trade-offs are indicative of the instability of certain diversification patterns and effectively bound speciation rates (for successful clades) within upper and lower limits. Finally, both the constrained range and geometry of phylogenetic space are established by the differential effects of macroevolutionary processes on patterns of diversification. Given these properties, we show that the average path through phylogenetic space over evolutionary time traverses several diversification stages, each of which is defined by a different principal pattern of diversification and directed by a different macroevolutionary process. The identification of universal patterns and natural constraints to diversification provides a foundation for understanding the deep-time evolution of

  1. The Invasive Species Forecasting System

    Science.gov (United States)

    Schnase, John; Most, Neal; Gill, Roger; Ma, Peter

    2011-01-01

    The Invasive Species Forecasting System (ISFS) provides computational support for the generic work processes found in many regional-scale ecosystem modeling applications. Decision support tools built using ISFS allow a user to load point occurrence field sample data for a plant species of interest and quickly generate habitat suitability maps for geographic regions of management concern, such as a national park, monument, forest, or refuge. This type of decision product helps resource managers plan invasive species protection, monitoring, and control strategies for the lands they manage. Until now, scientists and resource managers have lacked the data-assembly and computing capabilities to produce these maps quickly and cost efficiently. ISFS focuses on regional-scale habitat suitability modeling for invasive terrestrial plants. ISFS s component architecture emphasizes simplicity and adaptability. Its core services can be easily adapted to produce model-based decision support tools tailored to particular parks, monuments, forests, refuges, and related management units. ISFS can be used to build standalone run-time tools that require no connection to the Internet, as well as fully Internet-based decision support applications. ISFS provides the core data structures, operating system interfaces, network interfaces, and inter-component constraints comprising the canonical workflow for habitat suitability modeling. The predictors, analysis methods, and geographic extents involved in any particular model run are elements of the user space and arbitrarily configurable by the user. ISFS provides small, lightweight, readily hardened core components of general utility. These components can be adapted to unanticipated uses, are tailorable, and require at most a loosely coupled, nonproprietary connection to the Web. Users can invoke capabilities from a command line; programmers can integrate ISFS's core components into more complex systems and services. Taken together, these

  2. Why some plant species are rare.

    Science.gov (United States)

    Wieger Wamelink, G W; Wamelink, G W Weiger; Goedhart, Paul W; Frissel, Joep; Frissel, Josep Y

    2014-01-01

    Biodiversity, including plant species diversity, is threatened worldwide as a result of anthropogenic pressures such as an increase of pollutants and climate change. Rare species in particular are on the verge of becoming extinct. It is still unclear as to why some plant species are rare and others are not. Are they rare due to: intrinsic reasons, dispersal capacity, the effects of management or abiotic circumstances? Habitat preference of rare plant species may play an important role in determining why some species are rare. Based on an extensive data set of soil parameters we investigated if rarity is due to a narrow habitat preference for abiotic soil parameters. For 23 different abiotic soil parameters, of which the most influential were groundwater-table, soil-pH and nutrient-contents, we estimated species responses for common and rare species. Based on the responses per species we calculated the range of occurrence, the range between the 5 and 95 percentile of the response curve giving the habitat preference. Subsequently, we calculated the average response range for common and rare species. In addition, we designed a new graphic in order to provide a better means for presentation of the results. The habitat preferences of rare species for abiotic soil conditions are significantly narrower than for common species. Twenty of the twenty-three abiotic parameters showed on average significantly narrower habitat preferences for rare species than for common species; none of the abiotic parameters showed on average a narrower habitat preference for common species. The results have major implications for the conservation of rare plant species; accordingly management and nature development should be focussed on the maintenance and creation of a broad range of environmental conditions, so that the requirements of rare species are met. The conservation of (abiotic) gradients within ecosystems is particularly important for preserving rare species.

  3. SIS - Species and Stock Administrative Data Set

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The Species and Stock Administrative data set within the Species Information System (SIS) defines entities within the database that serve as the basis for recording...

  4. Assessing Pesticides under the Endangered Species Act

    Science.gov (United States)

    EPA’s pesticide risk assessment and regulatory processes ensure that protections are in place for all populations of non-target species. We have developed risk assessment procedures to determine potential for harm to individuals of a listed species.

  5. Molecular Diagnosis of Pathogenic Sporothrix Species

    NARCIS (Netherlands)

    Rodrigues, Anderson Messias; de Hoog, G Sybren; de Camargo, Zoilo Pires

    2015-01-01

    BACKGROUND: Sporotrichosis is a chronic (sub)cutaneous infection caused by thermodimorphic fungi in the order, Ophiostomatales. These fungi are characterized by major differences in routes of transmission, host predilections, species virulence, and susceptibilities to antifungals. Sporothrix species

  6. 76 FR 68776 - Invasive Species Advisory Committee

    Science.gov (United States)

    2011-11-07

    ... broad array of issues related to preventing the introduction of invasive species and providing for their...-2012 Invasive Species National Management Plan. The meeting is open to the public. An orientation...

  7. Species coextinctions and the biodiversity crisis.

    Science.gov (United States)

    Koh, Lian Pin; Dunn, Robert R; Sodhi, Navjot S; Colwell, Robert K; Proctor, Heather C; Smith, Vincent S

    2004-09-10

    To assess the coextinction of species (the loss of a species upon the loss of another), we present a probabilistic model, scaled with empirical data. The model examines the relationship between coextinction levels (proportion of species extinct) of affiliates and their hosts across a wide range of coevolved interspecific systems: pollinating Ficus wasps and Ficus, parasites and their hosts, butterflies and their larval host plants, and ant butterflies and their host ants. Applying a nomographic method based on mean host specificity (number of host species per affiliate species), we estimate that 6300 affiliate species are "coendangered" with host species currently listed as endangered. Current extinction estimates need to be recalibrated by taking species coextinctions into account.

  8. 77 FR 23740 - Invasive Species Advisory Committee

    Science.gov (United States)

    2012-04-20

    ... broad array of issues related to preventing the introduction of invasive species and providing for their... both ecological and management contexts, will center on topics that: (1) Pertain to invasive species...

  9. Endangered species toxicity extrapolation using ICE models

    Science.gov (United States)

    The National Research Council’s (NRC) report on assessing pesticide risks to threatened and endangered species (T&E) included the recommendation of using interspecies correlation models (ICE) as an alternative to general safety factors for extrapolating across species. ...

  10. Foliar flavonoids of nine species of Bauhinia

    OpenAIRE

    SALATINO, ANTONIO; BLATT, CECÍLIA T.T.; SANTOS, DÉBORAH Y.A.C. DOS; VAZ, ANGELA M.S.F.

    1999-01-01

    Foliar flavonoids of nine species of Bauhinia were isolated and identified. All the compounds correspond to glycosides derived from kaempferol, quercetin, isorhamnetin and myricetin. Derivatives of the latter aglyconhe seem to be rare in Bauhinia. Derivatives of isorhamnetin are commonly found in species of subgenus Bauhinia and were not detected in the two species of subgenus Phanera. Flavonoid patterns of species of the former subgenus are in general more complex than those of the latter. ...

  11. New species of Cystolepiota from China

    Directory of Open Access Journals (Sweden)

    Meng-Lin Xu

    2016-10-01

    Full Text Available In this paper, a new species, Cystolepiota pseudofumosifolia, is introduced. C. pseudofumosifolia is characterized by granulose or powdery pileus with an anatomic structure that is loosely globose, as well as ellipsoid cells in chains in the pileus covering the cheilocystidia. This new species is compared to the related and similar Cystolepiota species in morphology and molecular phylogeny based on Internal transcribed spacer sequences. Both types of data support our specimens as a new species in the genus Cystolepiota.

  12. Biodiversity in the cyclic competition system of three species according to the emergence of mutant species

    Science.gov (United States)

    Park, Junpyo

    2018-05-01

    Understanding mechanisms which promote or hinder existing ecosystems are important issues in ecological sciences. In addition to fundamental interactions such as competition and migration among native species, existing ecosystems can be easily disturbed by external factors, and the emergence of new species may be an example in such cases. The new species which does not exist in a current ecosystem can be regarded as either alien species entered from outside or mutant species born by mutation in existing normal species. Recently, as existing ecosystems are getting influenced by various physical/chemical external factors, mutation due to anthropogenic and environmental factors can occur more frequently and is thus attracting much attention for the maintenance of ecosystems. In this paper, we consider emergences of mutant species among self-competing three species in the cyclic dominance. By defining mutation as the birth of mutant species, we investigate how mutant species can affect biodiversity in the existing ecosystem. Through microscopic and macroscopic approaches, we have found that the society of existing normal species can be disturbed by mutant species either the society is maintained accompanying with the coexistence of all species or jeopardized by occupying of mutant species. Due to the birth of mutant species, the existing society may be more complex by constituting two different groups of normal and mutant species, and our results can be contributed to analyze complex ecosystems of many species. We hope our findings may propose a new insight on mutation in cyclic competition systems of many species.

  13. Linking Keystone Species and Functional Groups: A New Operational Definition of the Keystone Species Concept

    Directory of Open Access Journals (Sweden)

    Robert D. Davic

    2003-07-01

    Full Text Available The concept of the "keystone species" is redefined to allow for the a priori prediction of these species within ecosystems. A keystone species is held to be a strongly interacting species whose top-down effect on species diversity and competition is large relative to its biomass dominance within a functional group. This operational definition links the community importance of keystone species to a specific ecosystem process, e.g., the regulation of species diversity, within functional groups at lower trophic levels that are structured by competition for a limited resource. The a priori prediction of keystone species has applied value for the conservation of natural areas.

  14. Unimodal models to relate species to environment

    NARCIS (Netherlands)

    Braak, ter C.J.F.

    1987-01-01

    To assess the impact of environmental change on biological communities knowledge about species-environment relationships is indispensable. Ecologists attempt to uncover the relationships between species and environment from data obtained from field surveys. In the survey, species are scored on their

  15. 3 CFR - The Endangered Species Act

    Science.gov (United States)

    2010-01-01

    ... 3 The President 1 2010-01-01 2010-01-01 false The Endangered Species Act Presidential Documents Other Presidential Documents Memorandum of March 3, 2009 The Endangered Species Act Memorandum for the Heads of Executive Departments and Agencies The Endangered Species Act (ESA), 16 U.S.C. 1531 et seq...

  16. 75 FR 29359 - Invasive Species Advisory Committee

    Science.gov (United States)

    2010-05-25

    ... Council is co-chaired by the Secretary of the Interior, the Secretary of Agriculture, and the Secretary of... of the most invaded marine/coastal environments in the world, with over 50 invasive species that... development of state invasive species councils. DATES: Meeting of the Invasive Species Advisory Committee...

  17. Endangered Species & Biodiversity: A Classroom Project & Theme

    Science.gov (United States)

    Lauro, Brook

    2012-01-01

    Students discover the factors contributing to species losses worldwide by conducting a project about endangered species as a component of a larger classroom theme of biodiversity. Groups conduct research using online endangered- species databases and present results to the class using PowerPoint. Students will improve computer research abilities…

  18. The Gilbertiodendron ogoouense species complex (Leguminosae

    NARCIS (Netherlands)

    Burgt, van der X.M.; Mackinder, B.A.; Wieringa, J.J.; Estrella, de la Manuel

    2015-01-01

    The Gilbertiodendron ogoouense species complex consists of 14 tree species. Eight species are here newly described and one is here reinstated: G. bambolense Burgt; G. breteleri Burgt; G. ebo Burgt & Mackinder; G. ecoukense (Pellegr.) Burgt; G. maximum Burgt & Wieringa; G. minkebense Burgt

  19. Brachyspira Species and Gastroenteritis in Humans

    NARCIS (Netherlands)

    Westerman, L.J.; Boer, de R.F.; Roelfsema, J.H.; Friesema, I.H.M.; Kortbeek, L.M.; Wagenaar, J.A.; Bonten, M.J.M.; Kusters, J.G.

    2013-01-01

    Brachyspira species have been implicated as a potential cause of gastroenteritis in humans; this is, however, controversial. In 733 gastroenteritis cases and 464 controls, we found 29 samples positive for Brachyspira species (2.3% of cases and 2.6% of controls; P = 0.77). Brachyspira species were

  20. Brachyspira Species and Gastroenteritis in Humans

    NARCIS (Netherlands)

    Westerman, L J; de Boer, R F; Roelfsema, J H; Friesema, I H M; Kortbeek, L M; Wagenaar, J A; Bonten, M J M; Kusters, J G

    Brachyspira species have been implicated as a potential cause of gastroenteritis in humans; this is, however, controversial. In 733 gastroenteritis cases and 464 controls, we found 29 samples positive for Brachyspira species (2.3% of cases and 2.6% of controls; P = 0.77). Brachyspira species were

  1. 22 CFR 216.5 - Endangered species.

    Science.gov (United States)

    2010-04-01

    ... 22 Foreign Relations 1 2010-04-01 2010-04-01 false Endangered species. 216.5 Section 216.5 Foreign Relations AGENCY FOR INTERNATIONAL DEVELOPMENT ENVIRONMENTAL PROCEDURES § 216.5 Endangered species. It is A... endangered or threatened species and their critical habitats. The Initial Environmental Examination for each...

  2. Invasive Species Science Update (No. 7)

    Science.gov (United States)

    Dean Pearson; Yvette Ortega; Jack Butler

    2014-01-01

    Invasive Species Science Updates are designed to keep managers and other users up-to-date with recently completed and ongoing research by RMRS scientists, as well as highlight breaking news related to invasive species issues. The newsletter is produced by the RMRS Invasive Species Working Group (ISWG), which is a core group of scientists who volunteer to coordinate...

  3. Do invasive plant species alter soil health?

    Science.gov (United States)

    Invasive species may alter soil characteristics or interact with the soil microbial community to yield a competitive advantage. Our objectives were to determine: if invasive plant species alter soil properties important to soil health; and the long-term effects of invasive plant species on soil pro...

  4. Options in dealing with marine alien species

    NARCIS (Netherlands)

    Pelt-Heerschap, van H.M.L.; Sneekes, A.C.; Foekema, E.M.

    2015-01-01

    Invasive species can have strong impact on the local ecosystem, not only substantial impact on the local ecosystem, but also on economy and human health. This review on marine alien species outlines aspects of prevention, eradication and control strategies. When managing invasive species, prevention

  5. Species rarity: definition, causes, and classification

    Science.gov (United States)

    Curtis H. Flather; Carolyn Hull Sieg

    2007-01-01

    In virtually all ecological communities around the world, most species are represented by few individuals, and most individuals come from only a few of the most common species. Why this distribution of species abundances is so regularly observed among different taxonomic sets in geographically diverse systems is a question that has received considerable theoretical and...

  6. New french uranium mineral species

    International Nuclear Information System (INIS)

    Branche, G.; Chervet, J.; Guillemin, C.

    1952-01-01

    In this work, the authors study the french new uranium minerals: parsonsite and renardite, hydrated phosphates of lead and uranium; kasolite: silicate hydrated of uranium and lead uranopilite: sulphate of uranium hydrated; bayleyite: carbonate of uranium and of hydrated magnesium; β uranolite: silicate of uranium and of calcium hydrated. For all these minerals, the authors give the crystallographic, optic characters, and the quantitative chemical analyses. On the other hand, the following species, very rare in the french lodgings, didn't permit to do quantitative analyses. These are: the lanthinite: hydrated uranate oxide; the α uranotile: silicate of uranium and of calcium hydrated; the bassetite: uranium phosphate and of hydrated iron; the hosphuranylite: hydrated uranium phosphate; the becquerelite: hydrated uranium oxide; the curite: oxide of uranium and lead hydrated. Finally, the authors present at the end of this survey a primary mineral: the brannerite, complex of uranium titanate. (author) [fr

  7. Satellite tracking of threatened species

    Science.gov (United States)

    Williams, M.; Lunsford, A.; Ellis, D.; Robinson, J.; Coronado, P.; Campbell, W.

    1998-01-01

    In 1990, a joint effort of two U.S. federal agencies, NASA Goddard Space Flight Center (GSFC) and the Patuxent Wildlife Research Center, began. We initially joined forces in a project that used satellite telemetry to discover the winter home of a tiny dwindling population of Siberian Cranes. Since then several projects have emerged, and a web site was created to follow some of these activities. This web site is called the Satellite Tracking of Threatened Species and its location is http://sdcd.gsfc.nasa.gov/ISTO/satellite_tracking. It describes the overall program, and links you to three subsections that describe the projects in more detail: Satellite Direct Readout, Birdtracks, and Birdworld.

  8. Ensemble forecasting of species distributions.

    Science.gov (United States)

    Araújo, Miguel B; New, Mark

    2007-01-01

    Concern over implications of climate change for biodiversity has led to the use of bioclimatic models to forecast the range shifts of species under future climate-change scenarios. Recent studies have demonstrated that projections by alternative models can be so variable as to compromise their usefulness for guiding policy decisions. Here, we advocate the use of multiple models within an ensemble forecasting framework and describe alternative approaches to the analysis of bioclimatic ensembles, including bounding box, consensus and probabilistic techniques. We argue that, although improved accuracy can be delivered through the traditional tasks of trying to build better models with improved data, more robust forecasts can also be achieved if ensemble forecasts are produced and analysed appropriately.

  9. Core-satellite species hypothesis and native versus exotic species in secondary succession

    Science.gov (United States)

    Martinez, Kelsey A.; Gibson, David J.; Middleton, Beth A.

    2015-01-01

    A number of hypotheses exist to explain species’ distributions in a landscape, but these hypotheses are not frequently utilized to explain the differences in native and exotic species distributions. The core-satellite species (CSS) hypothesis predicts species occupancy will be bimodally distributed, i.e., many species will be common and many species will be rare, but does not explicitly consider exotic species distributions. The parallel dynamics (PD) hypothesis predicts that regional occurrence patterns of exotic species will be similar to native species. Together, the CSS and PD hypotheses may increase our understanding of exotic species’ distribution relative to natives. We selected an old field undergoing secondary succession to study the CSS and PD hypotheses in conjunction with each other. The ratio of exotic to native species (richness and abundance) was observed through 17 years of secondary succession. We predicted species would be bimodally distributed and that exotic:native species ratios would remain steady or decrease through time under frequent disturbance. In contrast to the CSS and PD hypotheses, native species occupancies were not bimodally distributed at the site, but exotic species were. The exotic:native species ratios for both richness (E:Nrichness) and abundance (E:Ncover) generally decreased or remained constant throughout supporting the PD hypothesis. Our results suggest exotic species exhibit metapopulation structure in old field landscapes, but that metapopulation structures of native species are disrupted, perhaps because these species are dispersal limited in the fragmented landscape.

  10. The influence of age on the composting rate of organic material by Eisenia fetida (Oligochaeta

    Directory of Open Access Journals (Sweden)

    Editorial Office

    1995-07-01

    Full Text Available One of the main objectives of a vermicomposting plant is to achieve a maximum composting rate of organic waste. Apart from population densities, substrate characteristics and environmental factors, age structure of the population is expected to affect the rate of composting. The composting rate of worms was studied in the laboratory under optimal conditions over a period of 55 days. Growth and sexual maturity were monitored as well as the composting rate during various stages of the life-cycle of Eisenia fetida. The composting rate was initially slow and reached a maximum peak when the worms were pre-clitellate.

  11. Reproduction and biochemical responses in Enchytraeus albidus (Oligochaeta) to zinc or cadmium exposures

    International Nuclear Information System (INIS)

    Novais, Sara C.; Gomes, Susana I.L.; Gravato, Carlos; Guilhermino, Lucia; De Coen, Wim; Soares, Amadeu M.V.M.; Amorim, Monica J.B.

    2011-01-01

    To better understand chemical modes of action, emphasis has been given to stress responses at lower levels of biological organization. Cholinesterases and antioxidant defenses are among the most used biomarkers due to their crucial role in the neurocholinergic transmission and in cell homeostasis preventing DNA damage, enzymatic inactivation and lipid peroxidation. The main goal of this study was to investigate the effects of zinc and cadmium on survival and reproduction of E. albidus and to assess metals oxidative stress potential and neurotoxic effects at concentrations that affected reproduction. Both metals affected the enchytraeids' survival and reproduction and induced significant changes in the antioxidant defenses as well as increased lipid peroxidation, indicating oxidative damage. This study demonstrates that determining effects at different levels of biological organization can give better information on the physiological responses of enchytraeids in metal contamination events and further unravel the mechanistic processes dealing with metal stress. - Highlights: → Zinc and cadmium influence the survival and reproduction of Enchytraeus albidus. → Oxidative stress and membrane damage occur at reproduction effect concentrations. → Glutathione seems to be important in the antioxidant defense against metals. → Time intervals (2, 4, 8 days) allowed following the evolution of oxidative events. - Zinc and cadmium cause oxidative stress and membrane damage in Enchytraeus albidus at reproduction effect concentrations.

  12. Effects of different gamma exposure regimes on reproduction in the earthworm Eisenia fetida (Oligochaeta)

    Energy Technology Data Exchange (ETDEWEB)

    Hertel-Aas, Turid, E-mail: turid.hertel-aas@umb.no [Department of Plant and Environmental Sciences, Norwegian University of Life Sciences, P.O. Box 5003, 1432 Aas (Norway); Brunborg, Gunnar, E-mail: Gunnar.Brunborg@fhi.no [Department of Chemical Toxicology, Norwegian Institute of Public Health, P.O. Box 4404 Nydalen, 0403 Oslo (Norway); Jaworska, Alicja, E-mail: Alicja.Jaworska@nrpa.no [Department of Emergency Preparedness and Environmental Radioactivity, Norwegian Radiation Protection Authority, P.O. Box 55, 1332, Osteraas (Norway); Salbu, Brit, E-mail: brit.salbu@umb.no [Department of Plant and Environmental Sciences, Norwegian University of Life Sciences, P.O. Box 5003, 1432 Aas (Norway); Oughton, Deborah Helen, E-mail: deborah.oughton@umb.no [Department of Plant and Environmental Sciences, Norwegian University of Life Sciences, P.O. Box 5003, 1432 Aas (Norway)

    2011-12-15

    Ecological risk assessment of ionising radiation requires knowledge about the responses of individuals and populations to chronic exposures, including situations when exposure levels change over time. The present study investigated processes such as recovery and the adaptive response with respect to reproduction endpoints in the earthworm Eisenia fetida exposed to {sup 60}Co {gamma}-radiation. Furthermore, a crossed experiment was performed to investigate the influence of F0 parental and F1 embryonic irradiation history on the response of irradiated or non-irradiated F1 offspring. Recovery: The sterility induced by sub-chronic exposure at 17 mGy/h (accumulated dose: 25 Gy) was temporary, and 8 weeks after irradiation the worms had regained their reproductive capacity (number of viable offspring produced per adult per week). Adaptive response: Adult worms were continuously exposed at a low priming dose rate of 0.14 mGy/h for 12 weeks (accumulated dose: 0.24 Gy), followed by 14 weeks exposure at a challenge dose rate of 11 mGy/h. The results suggest a lack of adaptive response, since there were no significant differences in the effects on reproduction capacity between the primed and the unprimed groups after challenge doses ranging from 7.6 to 27 Gy. Crossed experiment: The effects of exposure at 11 mGy/h for 21 weeks on growth, sexual maturation and reproduction of offspring, derived either from parent worms and cocoons both exposed at 11 mGy/h, or from non-irradiated parents and cocoons (total accumulated dose 44 and 38 Gy, respectively) were compared. There were no significant differences between the two exposed offspring groups for any of the endpoints. The reproduction capacity was very low for both groups compared to the controls, but the reproduction seemed to be maintained at the reduced level, which could indicate acclimatisation or stabilisation. Finally, parental and embryonic exposures at 11 mGy/h did not affect reproduction in the F1 offspring as adults.

  13. Mycoflora in the intestine of Eisenia andrei (Oligochaeta, Lumbricidae) and in vermiculture substrates

    Czech Academy of Sciences Publication Activity Database

    Nováková, Alena; Pižl, Václav

    2003-01-01

    Roč. 55, 1/2 (2003), s. 83-102 ISSN 1211-0981 R&D Projects: GA AV ČR IAA6066001 Institutional research plan: CEZ:AV0Z6066911 Keywords : cattle manure * saprotrophic and cellulolytic microfungi * earthworms Subject RIV: EH - Ecology, Behaviour

  14. Digestion of bacteria by Nais variabilis (Oligochaeta) as established by autoradiography

    International Nuclear Information System (INIS)

    Harper, R.M.; Fry, J.C.; Learner, M.A.

    1981-01-01

    Serratia marcescens grown on different tritiated substrates was fed to Nais variabilis for 40 min, 4 h, and 17 h periods. The substrates were glucose, thymidine and glycerol which labelled mainly low molecular compounds, DNA, and lipids respectively. The worms incorporated radioactive label into their tissues within 40 min of feeding on the labelled bacteria. Incorporation of label where low molecular weight compounds were labelled could be due to absorption of dissolved bacterial secretions through the gut or body wall. However, DNA is a macromolecule not secreted by bacteria, consequently the label within this molecule could only accumulate in worm tissue after digestion, absorption and assimilation. No definite pattern of uptake or translocation along the worm was conclusively established but there was some indication that uptake was greatest in the anterior region of the intestine. Bacterial lipids were digested more slowly than the other materials labelled. (author)

  15. Interactions between microfungi and Eisenia andrei (Oligochaeta) during cattle manure vermicomposting

    Czech Academy of Sciences Publication Activity Database

    Pižl, Václav; Nováková, Alena

    2003-01-01

    Roč. 47, - (2003), s. 895-899 ISSN 0031-4056 R&D Projects: GA AV ČR IAA6066001 Institutional research plan: CEZ:AV0Z6066911 Keywords : Eisenia andrei * earthworms * microscopic fungi Subject RIV: EH - Ecology, Behaviour Impact factor: 0.711, year: 2003

  16. New aspects of the possible sites of ultrafiltration in annelids (oligochaeta).

    Science.gov (United States)

    Hansen, U

    1995-02-01

    Electron microscopic investigations of blood vessels were conducted to show sites of filtration such as podocytes or fenestrated endothelia. The endothelia of the blood vessels of Aelosoma hemprichi, Nais elinguis, Dero obtusa and Enchytraeus buchholzi consist of myoendothelial cells, chloragocytes and podocytes. The podocytes form large archs over a considerable area of the vessels. On the lumen side of the vessel there are several columnar processes which split into numerous small pedicels. The gaps between the adjacent pedicles are bridged by slit membranes. The podocytes are restricted to the front part of the ventral vessel. They are presumed to form a filtration surface. Furthermore, some parts of the ventral vessel are formed by a fenestrated endothelium, mainly in Enchytraeus buchholzi. In the vascular system of E. buchholzi two separate filtration sites were found. Additionally to the filtration site between ventral vessel and coelomic cavity a second filtration site was found in the front part of the body between blood sinus and coelomic cavity. In such areas the basement membrane is the only continuous layer between the blood vessel and the coelomic cavity. Its thickness is in the range of 40 nm. Possible filtration sites in the form of podocytes and irregular fenestrations could be localized at the border between the blood compartment and the coelomic compartment. It can be presumed that the primary urine may be formed by ultrafiltration of blood.

  17. Biochar alleviates the toxicity of imidacloprid and silver nanoparticles (AgNPs) to Enchytraeus albidus (Oligochaeta).

    Science.gov (United States)

    Nyoka, Ngitheni Winnie-Kate; Kanyile, Sthandiwe Nomthandazo; Bredenhand, Emile; Prinsloo, Godfried Jacob; Voua Otomo, Patricks

    2018-04-01

    The present study investigated the use of biochar for the alleviation of the toxic effects of a nanosilver colloidal dispersion and a chloronicotinyl insecticide. The survival and reproduction of the potworm Enchytraeus albidus were assessed after exposure to imidacloprid and silver nanoparticles (AgNPs). E. albidus was exposed to 0, 25, 50, 100, 200, and 400 mg imidacloprid/kg and 0, 5, 25, 125, and 625 mg Ag/kg for 21 days in 10% biochar amended and non-biochar amended OECD artificial soil. In both exposure substrates, the effects of imidacloprid on survival were significant in the two highest treatments (p imidacloprid. In the case of AgNPs, significant mortality was only observed in the highest AgNP treatments in both the amended and non-amended soils (p imidacloprid/kg in the non-amended soil and a higher EC 50  = 46.23 mg imidacloprid/kg in the biochar-amended soil. This indicated a 2-fold decrease in imidacloprid toxicity due to biochar amendment. A similar observation was made in the case of AgNPs where a reproduction EC 50  = 166.70 mg Ag/kg soil in the non-amended soil increased to an EC 50  > 625 mg Ag/kg soil (the highest AgNP treatment) in the amended soil. This indicated at least a 3.7-fold decrease in AgNPs toxicity due to biochar amendment. Although more studies may be needed to optimize the easing effects of biochar on the toxicity of these chemicals, the present results show that biochar could be useful for the alleviation of the toxic effects of imidacloprid and silver nanoparticles in the soil.

  18. Reproduction and biochemical responses in Enchytraeus albidus (Oligochaeta) to zinc or cadmium exposures

    Energy Technology Data Exchange (ETDEWEB)

    Novais, Sara C., E-mail: sara.novais@ua.pt [CESAM and Department of Biology, University of Aveiro, 3810-193 Aveiro (Portugal); Gomes, Susana I.L. [CESAM and Department of Biology, University of Aveiro, 3810-193 Aveiro (Portugal); Gravato, Carlos [CIIMAR-Centro Interdisciplinar de Investigacao Marinha e Ambiental, Laboratorio de Ecotoxicologia e Ecologia, Universidade do Porto, Rua dos Bragas, 289, 4050-123 Porto (Portugal); Guilhermino, Lucia [CIIMAR-Centro Interdisciplinar de Investigacao Marinha e Ambiental, Laboratorio de Ecotoxicologia e Ecologia, Universidade do Porto, Rua dos Bragas, 289, 4050-123 Porto (Portugal); ICBAS-Instituto de Ciencias Biomedicas Abel Salazar, Departamento de Estudos de Populacoes, Laboratorio de Ecotoxicologia, Universidade do Porto, Porto (Portugal); De Coen, Wim [University of Antwerp, Department of Biology - E.B.T., Groenenborgerlaan 171 - U.7., B-2020 Antwerp (Belgium); Soares, Amadeu M.V.M.; Amorim, Monica J.B. [CESAM and Department of Biology, University of Aveiro, 3810-193 Aveiro (Portugal)

    2011-07-15

    To better understand chemical modes of action, emphasis has been given to stress responses at lower levels of biological organization. Cholinesterases and antioxidant defenses are among the most used biomarkers due to their crucial role in the neurocholinergic transmission and in cell homeostasis preventing DNA damage, enzymatic inactivation and lipid peroxidation. The main goal of this study was to investigate the effects of zinc and cadmium on survival and reproduction of E. albidus and to assess metals oxidative stress potential and neurotoxic effects at concentrations that affected reproduction. Both metals affected the enchytraeids' survival and reproduction and induced significant changes in the antioxidant defenses as well as increased lipid peroxidation, indicating oxidative damage. This study demonstrates that determining effects at different levels of biological organization can give better information on the physiological responses of enchytraeids in metal contamination events and further unravel the mechanistic processes dealing with metal stress. - Highlights: > Zinc and cadmium influence the survival and reproduction of Enchytraeus albidus. > Oxidative stress and membrane damage occur at reproduction effect concentrations. > Glutathione seems to be important in the antioxidant defense against metals. > Time intervals (2, 4, 8 days) allowed following the evolution of oxidative events. - Zinc and cadmium cause oxidative stress and membrane damage in Enchytraeus albidus at reproduction effect concentrations.

  19. Efectos subletales de la lambda-cialotrina sobre eisenia fetida (Annelida, Oligochaeta, Lumbricidae)

    OpenAIRE

    Ricardo, Tamara; Maitre, Maria Ines; Rodriguez, Alba Rut

    2017-01-01

    El uso intensivo de agroquímicos provoca efectos indeseables sobre la fauna no blanco. Dentro de la misma, los oligoquetos contribuyen a mantener la estructura y fertilidad del suelo. La lambda-cialotrina es uno de los insecticidas piretroides más utilizados en Argentina, pero son escasos los datos existentes acerca de su toxicidad sobre oligoquetos. Los objetivos de este trabajo fueron evaluar mediante bioensayos de toxicidad crónica los efectos de lambda-cialotrina (producto comercial al 5%...

  20. Automated analysis of two-dimensional positions and body lengths of earthworms (Oligochaeta); MimizuTrack.

    Science.gov (United States)

    Kodama, Naomi; Kimura, Toshifumi; Yonemura, Seiichiro; Kaneda, Satoshi; Ohashi, Mizue; Ikeno, Hidetoshi

    2014-01-01

    Earthworms are important soil macrofauna inhabiting almost all ecosystems. Their biomass is large and their burrowing and ingestion of soils alters soil physicochemical properties. Because of their large biomass, earthworms are regarded as an indicator of "soil heath". However, primarily because the difficulties in quantifying their behavior, the extent of their impact on soil material flow dynamics and soil health is poorly understood. Image data, with the aid of image processing tools, are a powerful tool in quantifying the movements of objects. Image data sets are often very large and time-consuming to analyze, especially when continuously recorded and manually processed. We aimed to develop a system to quantify earthworm movement from video recordings. Our newly developed program successfully tracked the two-dimensional positions of three separate parts of the earthworm and simultaneously output the change in its body length. From the output data, we calculated the velocity of the earthworm's movement. Our program processed the image data three times faster than the manual tracking system. To date, there are no existing systems to quantify earthworm activity from continuously recorded image data. The system developed in this study will reduce input time by a factor of three compared with manual data entry and will reduce errors involved in quantifying large data sets. Furthermore, it will provide more reliable measured values, although the program is still a prototype that needs further testing and improvement. Combined with other techniques, such as measuring metabolic gas emissions from earthworm bodies, this program could provide continuous observations of earthworm behavior in response to environmental variables under laboratory conditions. In the future, this standardized method will be applied to other animals, and the quantified earthworm movement will be incorporated into models of soil material flow dynamics or behavior in response to chemical substances present in the soil.

  1. Assessing the toxicity of herbicide isoproturon on Aporrectodea caliginosa (Oligochaeta) and its fate in soil ecosystem.

    Science.gov (United States)

    Mosleh, Yahia Youssef Ismail

    2009-08-01

    This study was conducted to determine the residues of isoproturon and its metabolites, 1-(4-isopropylphenyl)-3-methylurea, 1-(4-isopropylphenyl) urea, and 4-isopropylanilin in soil and mature earthworms under laboratory conditions. Mature earthworms (Aporrectodea caliginosa) were exposed for various durations (7, 15, 30, and 60 days) to soils contaminated with isoproturon concentrations (2, 4, 6, 8, and 10 mg kg(-1) soil). The decrease in isoproturon concentration in the soil was inversely correlated to it's initial concentration. The highest concentration detected for isoproturon in earthworms was observed during the first 15 days and decreased thereafter. Acute toxicity of isoproturon was investigated; total soluble protein content and glycogen of the worms were evaluated. Levels of these parameters were related to isoproturon concentration in soil and earthworms. No lethal effect of isoproturon was observed even at the concentration of 1200 mg kg(-1) soil after 60 days of exposure. A reduction of total soluble protein was observed in all treated worms (maximum 59.54%). This study suggests the use of the total soluble protein content and glycogen of earthworms as biomarkers of exposure to isoproturon. 2008 Wiley Periodicals, Inc.

  2. The nuclear question: rethinking species importance in multi-species animal groups.

    Science.gov (United States)

    Srinivasan, Umesh; Raza, Rashid Hasnain; Quader, Suhel

    2010-09-01

    1. Animals group for various benefits, and may form either simple single-species groups, or more complex multi-species associations. Multi-species groups are thought to provide anti-predator and foraging benefits to participant individuals. 2. Despite detailed studies on multi-species animal groups, the importance of species in group initiation and maintenance is still rated qualitatively as 'nuclear' (maintaining groups) or 'attendant' (species following nuclear species) based on species-specific traits. This overly simplifies and limits understanding of inherently complex associations, and is biologically unrealistic, because species roles in multi-species groups are: (i) likely to be context-specific and not simply a fixed species property, and (ii) much more variable than this dichotomy indicates. 3. We propose a new view of species importance (measured as number of inter-species associations), along a continuum from 'most nuclear' to 'least nuclear'. Using mixed-species bird flocks from a tropical rainforest in India as an example, we derive inter-species association measures from randomizations on bird species abundance data (which takes into account species 'availability') and data on 86 mixed-species flocks from two different flock types. Our results show that the number and average strength of inter-species associations covary positively, and we argue that species with many, strong associations are the most nuclear. 4. From our data, group size and foraging method are ecological and behavioural traits of species that best explain nuclearity in mixed-species bird flocks. Parallels have been observed in multi-species fish shoals, in which group size and foraging method, as well as diet, have been shown to correlate with nuclearity. Further, the context in which multi-species groups occur, in conjunction with species-specific traits, influences the role played by a species in a multi-species group, and this highlights the importance of extrinsic factors in

  3. Ecological impacts of non-native species

    Science.gov (United States)

    Wilkinson, John W.

    2012-01-01

    Non-native species are considered one of the greatest threats to freshwater biodiversity worldwide (Drake et al. 1989; Allen and Flecker 1993; Dudgeon et al. 2005). Some of the first hypotheses proposed to explain global patterns of amphibian declines included the effects of non-native species (Barinaga 1990; Blaustein and Wake 1990; Wake and Morowitz 1991). Evidence for the impact of non-native species on amphibians stems (1) from correlative research that relates the distribution or abundance of a species to that of a putative non-native species, and (2) from experimental tests of the effects of a non-native species on survival, growth, development or behaviour of a target species (Kats and Ferrer 2003). Over the past two decades, research on the effects of non-native species on amphibians has mostly focused on introduced aquatic predators, particularly fish. Recent research has shifted to more complex ecological relationships such as influences of sub-lethal stressors (e.g. contaminants) on the effects of non-native species (Linder et al. 2003; Sih et al. 2004), non-native species as vectors of disease (Daszak et al. 2004; Garner et al. 2006), hybridization between non-natives and native congeners (Riley et al. 2003; Storfer et al. 2004), and the alteration of food-webs by non-native species (Nystrom et al. 2001). Other research has examined the interaction of non-native species in terms of facilitation (i.e. one non-native enabling another to become established or spread) or the synergistic effects of multiple non-native species on native amphibians, the so-called invasional meltdown hypothesis (Simerloff and Von Holle 1999). Although there is evidence that some non-native species may interact (Ricciardi 2001), there has yet to be convincing evidence that such interactions have led to an accelerated increase in the number of non-native species and cumulative impacts are still uncertain (Simberloff 2006). Applied research on the control, eradication, and

  4. Microbial species delineation using whole genome sequences.

    Science.gov (United States)

    Varghese, Neha J; Mukherjee, Supratim; Ivanova, Natalia; Konstantinidis, Konstantinos T; Mavrommatis, Kostas; Kyrpides, Nikos C; Pati, Amrita

    2015-08-18

    Increased sequencing of microbial genomes has revealed that prevailing prokaryotic species assignments can be inconsistent with whole genome information for a significant number of species. The long-standing need for a systematic and scalable species assignment technique can be met by the genome-wide Average Nucleotide Identity (gANI) metric, which is widely acknowledged as a robust measure of genomic relatedness. In this work, we demonstrate that the combination of gANI and the alignment fraction (AF) between two genomes accurately reflects their genomic relatedness. We introduce an efficient implementation of AF,gANI and discuss its successful application to 86.5M genome pairs between 13,151 prokaryotic genomes assigned to 3032 species. Subsequently, by comparing the genome clusters obtained from complete linkage clustering of these pairs to existing taxonomy, we observed that nearly 18% of all prokaryotic species suffer from anomalies in species definition. Our results can be used to explore central questions such as whether microorganisms form a continuum of genetic diversity or distinct species represented by distinct genetic signatures. We propose that this precise and objective AF,gANI-based species definition: the MiSI (Microbial Species Identifier) method, be used to address previous inconsistencies in species classification and as the primary guide for new taxonomic species assignment, supplemented by the traditional polyphasic approach, as required. © The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research.

  5. Alien species on the coasts of Turkey

    Directory of Open Access Journals (Sweden)

    M.E. CINAR

    2005-12-01

    Full Text Available The compilation of data on alien species reported from the Turkish coasts yielded a total of 263 species belonging to 11 systematic groups, of which Mollusca had the highest number of species (85 species, followed by Crustacea (51, fishes (43 and phytobenthos (39. The Black Sea is represented by a total of 20 alien species, the Sea of Marmara by 48 species, the Aegean Sea by 98 species and the Levantine Sea by 202 species. The majority of aliens found in the Black Sea and the Sea of Marmara were transported via shipping, whereas the Levantine coast is extensively subjected to Lessepsian migration. Benthic habitats (soft and hard substrata comprise 76% of the total alien species and the pelagic environment is inhabited by thirty-nine species. Almost 50% of aliens collected from the Turkish coasts were found only at 0-10 m depth. Eight species occur at depths deeper than 100 m. The impacts of aliens on the benthic and pelagic ecosystems are presented.

  6. Genomic definition of species. Revision 2

    Energy Technology Data Exchange (ETDEWEB)

    Crkvenjakov, R.; Drmanac, R.

    1993-03-01

    A genome is the sum total of the DNA sequences in the cells of an individual organism. The common usage that species possess genomes comes naturally to biochemists, who have shown that all protein and nucleic acid molecules are at the same time species- and individual-specific, with minor individual variations being superimposed on a consensus sequence that is constant for a species. By extension, this property is attributed to the common features of DNA in the chromosomes of members of a given species and is called species genome. Our proposal for the definition of a biological species is as follows: A species comprises a group of actual and potential biological organisms built according to a unique genome program that is recorded, and at least in part expressed, in the structures of their genomic nucleic acid molecule(s), having intragroup sequence differences which can be fully interconverted in the process of organismal reproduction.

  7. Genomic definition of species. Revision 1

    Energy Technology Data Exchange (ETDEWEB)

    Crkvenjakov, R.; Dramanac, R.

    1992-06-01

    A genome is the sum total of the DNA sequences in the cells of an individual organism. The common usage that species possess genomes comes naturally to biochemists, who have shown that all protein and nucleic acid molecules are at the same time species and individual-specific, with minor individual variations being superimposed on a consensus sequence that is constant for a species. By extension, this property is attributed to the common features of DNA in the chromosomes of members of a given species and is called (species) genome. The definition of species based on chromosomes, genes, or genome common to its member organisms has been implied or mentioned in passing numerous times. Some population biologists think that members of species have similar ``homeostatic genotypes,`` which are to a degree resistant to mutation or environmental change in the production of a basic phenotype.

  8. Sea Cucumber (Holothuroidea Species of Turkey

    Directory of Open Access Journals (Sweden)

    Mehmet AYDIN

    2016-11-01

    Full Text Available There are nearly 1200 sea cucumber species in the world oceans, while only 37 species from Holothuroidea class lives in the Mediterranean Sea. This preliminary study aims identification sea cucumbers species of the Turkish waters. The sea cucumber samples used in this study were obtained from a series of different studies between the years of 2008 and 2014. Identification of the species are mainly based on the morphometric characteristics while some of species are determined from their calcareous spicules. Eight sea species were identified in this research which are; Holothuria tubulosa, Holothuria polii, Holothuria mammata, Holothuria (Platyperona sanctori, Holothuria forskali, Stichopus regalis, Synaptula reciprocans and Stereoderma kirschbergi. There are limited number of studies in the literature focusing on the identification of the sea cucumber species spread in our seas. Therefore, this study is believed to play an important role in guiding future researches.

  9. Fisheries oceanography of northern pelagic fish species

    DEFF Research Database (Denmark)

    Tsoukali, Stavroula

    for marine organisms. One of the impacts will be the time that species start to spawn, and there is already evidence for earlier spawning in some North Sea fish species. A change like that may likely have a chain reaction, affecting larval stages and whether they will live in environments with high food...... of the species they consume now and increased availability of new species. In addition, there will likely be economic impacts on the local fishing communities. How species respond to climate change is a field of research that receives great attention because the responses will affect the management of fisheries......People are familiar with marine fish species and the great variety of different species that are available in the market, such as herring, cod and sole. What may not be well known is that every individual fish goes through a long, risky journey during its life before reaching maturity. Most...

  10. Four new species of Pteromalus Swederus (Hymenoptera: Chalcidoidea: Pteromalidae) and redescriptions of three other species

    NARCIS (Netherlands)

    Gijswijt, M.J.

    1999-01-01

    A key to the European species of the Pteromalus altus group is presented. The relationship between this group and species of the genus Euphorbia (Euphorbiaceae) is confirmed. One new species: P. villosae, associated with Euphorbia villosa Waldst. & Kit.is presented. Two new species of the albipennis

  11. Palpi aplenty: New species in the Chrysotus longipalpus species group (Diptera: Dolichopodidae)

    Science.gov (United States)

    Justin B. Runyon; Renato S. Capellari

    2018-01-01

    Four new Nearctic species belonging to the Chrysotus longipalpus species group are described: Chrysotus keyensis sp. nov. (Florida), Chrysotus mccreadiei sp. nov. (Alabama), Chrysotus mystax sp. nov. (Alabama), and Chrysotus plumarista sp. nov. (Alabama). This brings the number of known species in this group to twelve. A key to species of males of the C. longipalpus...

  12. A globally-distributed alien invasive species poses risks to United States imperiled species.

    Science.gov (United States)

    McClure, Meredith L; Burdett, Christopher L; Farnsworth, Matthew L; Sweeney, Steven J; Miller, Ryan S

    2018-03-28

    In the midst of Earth's sixth mass extinction event, non-native species are a driving factor in many imperiled species' declines. One of the most widespread and destructive alien invasive species in the world, wild pigs (Sus scrofa) threaten native species through predation, habitat destruction, competition, and disease transmission. We show that wild pigs co-occur with up to 87.2% of imperiled species in the contiguous U.S. identified as susceptible to their direct impacts, and we project increases in both the number of species at risk and the geographic extent of risks by 2025. Wild pigs may therefore present a severe threat to U.S. imperiled species, with serious implications for management of at-risk species throughout wild pigs' global distribution. We offer guidance for efficient allocation of research effort and conservation resources across species and regions using a simple approach that can be applied to wild pigs and other alien invasive species globally.

  13. Bacillus cereus and related species.

    Science.gov (United States)

    Drobniewski, F A

    1993-10-01

    Bacillus cereus is a gram-positive aerobic or facultatively anaerobic spore-forming rod. It is a cause of food poisoning, which is frequently associated with the consumption of rice-based dishes. The organism produces an emetic or diarrheal syndrome induced by an emetic toxin and enterotoxin, respectively. Other toxins are produced during growth, including phospholipases, proteases, and hemolysins, one of which, cereolysin, is a thiol-activated hemolysin. These toxins may contribute to the pathogenicity of B. cereus in nongastrointestinal disease. B. cereus isolated from clinical material other than feces or vomitus was commonly dismissed as a contaminant, but increasingly it is being recognized as a species with pathogenic potential. It is now recognized as an infrequent cause of serious nongastrointestinal infection, particularly in drug addicts, the immunosuppressed, neonates, and postsurgical patients, especially when prosthetic implants such as ventricular shunts are inserted. Ocular infections are the commonest types of severe infection, including endophthalmitis, panophthalmitis, and keratitis, usually with the characteristic formation of corneal ring abscesses. Even with prompt surgical and antimicrobial agent treatment, enucleation of the eye and blindness are common sequelae. Septicemia, meningitis, endocarditis, osteomyelitis, and surgical and traumatic wound infections are other manifestations of severe disease. B. cereus produces beta-lactamases, unlike Bacillus anthracis, and so is resistant to beta-lactam antibiotics; it is usually susceptible to treatment with clindamycin, vancomycin, gentamicin, chloramphenicol, and erythromycin. Simultaneous therapy via multiple routes may be required.

  14. Antibiotic resistance in Burkholderia species.

    Science.gov (United States)

    Rhodes, Katherine A; Schweizer, Herbert P

    2016-09-01

    The genus Burkholderia comprises metabolically diverse and adaptable Gram-negative bacteria, which thrive in often adversarial environments. A few members of the genus are prominent opportunistic pathogens. These include Burkholderia mallei and Burkholderia pseudomallei of the B. pseudomallei complex, which cause glanders and melioidosis, respectively. Burkholderia cenocepacia, Burkholderia multivorans, and Burkholderia vietnamiensis belong to the Burkholderia cepacia complex and affect mostly cystic fibrosis patients. Infections caused by these bacteria are difficult to treat because of significant antibiotic resistance. The first line of defense against antimicrobials in Burkholderia species is the outer membrane penetration barrier. Most Burkholderia contain a modified lipopolysaccharide that causes intrinsic polymyxin resistance. Contributing to reduced drug penetration are restrictive porin proteins. Efflux pumps of the resistance nodulation cell division family are major players in Burkholderia multidrug resistance. Third and fourth generation β-lactam antibiotics are seminal for treatment of Burkholderia infections, but therapeutic efficacy is compromised by expression of several β-lactamases and ceftazidime target mutations. Altered DNA gyrase and dihydrofolate reductase targets cause fluoroquinolone and trimethoprim resistance, respectively. Although antibiotic resistance hampers therapy of Burkholderia infections, the characterization of resistance mechanisms lags behind other non-enteric Gram-negative pathogens, especially ESKAPE bacteria such as Acinetobacter baumannii, Klebsiella pneumoniae and Pseudomonas aeruginosa. Copyright © 2016 Elsevier Ltd. All rights reserved.

  15. Species longevity in North American fossil mammals.

    Science.gov (United States)

    Prothero, Donald R

    2014-08-01

    Species longevity in the fossil record is related to many paleoecological variables and is important to macroevolutionary studies, yet there are very few reliable data on average species durations in Cenozoic fossil mammals. Many of the online databases (such as the Paleobiology Database) use only genera of North American Cenozoic mammals and there are severe problems because key groups (e.g. camels, oreodonts, pronghorns and proboscideans) have no reliable updated taxonomy, with many invalid genera and species and/or many undescribed genera and species. Most of the published datasets yield species duration estimates of approximately 2.3-4.3 Myr for larger mammals, with small mammals tending to have shorter species durations. My own compilation of all the valid species durations in families with updated taxonomy (39 families, containing 431 genera and 998 species, averaging 2.3 species per genus) yields a mean duration of 3.21 Myr for larger mammals. This breaks down to 4.10-4.39 Myr for artiodactyls, 3.14-3.31 Myr for perissodactyls and 2.63-2.95 Myr for carnivorous mammals (carnivorans plus creodonts). These averages are based on a much larger, more robust dataset than most previous estimates, so they should be more reliable for any studies that need species longevity to be accurately estimated. © 2013 International Society of Zoological Sciences, Institute of Zoology/Chinese Academy of Sciences and Wiley Publishing Asia Pty Ltd.

  16. A Theory of Flagship Species Action

    Directory of Open Access Journals (Sweden)

    Paul Jepson

    2015-01-01

    Full Text Available The flagship species approach is an enduring strategy in conservation. Academic discussion on flagship species has focussed on two dimensions: on what basis should they be selected and how have they been put to use. Here we consider a third dimension, namely the manner in which flagship species act and have the capacity to galvanise and influence conservation outcomes. Drawing on concepts from the social sciences, viz. affordance, framing, and actor-networks; we discuss examples of flagship species to propose a theory of flagship species action. In brief, our theory posits that a flagship species is one with traits that afford the assembly of relatively coherent networks of associations with ideational elements located in pre-existing cultural framings. These associations give rise to opportunities to align with deep cultural frames, contemporary cultural phenomena and political economy such that when a conservation action is introduced, forms of agency cause the species and human publics to change. The species becomes re-framed (or reinvigorated as a cultural asset speaking for a wider nature, publics and political agendas. Further our theory posits that species with traits that enrol in idea networks incorporating human fears, will have limited flagship capacity. This is because the ability of the representations produced to align with frames incorporating collective aspirations is constrained. In terms of applied conservation practice, our theory suggests that: a key criteria for selecting potential flagship species is presence in existing cultural frames, that effective deployment of flagship species requires an understanding of the species′ cultural associations, and a species ability to galvanise action may be limited to certain times and places. Furthermore, once deployed conservation interests will never have full control over the flagship species: it may act in uncertain and unexpected ways.

  17. Competition between species of small mammals

    International Nuclear Information System (INIS)

    Grant, P.R.

    1978-01-01

    Interspecific competition has often been inferred from its results. In evolutionary time it has been responsible for patterns of regularity in the structure of mammalian communities, and in the morphological and ecological characteristics of the constituent species. In contemporary time it gives rise to reciprocal (complementary) numbers and distributions of two or more species. These inferences are strengthened by recent experimental demonstrations of competition between species of North American rodents. Recent observations and experiments are reviewed. The most thoroughly studied competitors are two species of microtine rodents, Microtus pennsylvanicus and Clethrionomys gapperi. Species which compete for space have been studied experimentally more often than have food competitors. Overt aggression is frequently implicated, but its importance in nature in relation to other means of interaction (e.g. through vocal or scent communication) is not known. The definitive study of competition for food between mammal species has yet to be performed

  18. Radiation protection of non-human species

    International Nuclear Information System (INIS)

    Leith, I.S.

    1993-01-01

    The effects of radiation on non-human species, both animals and plants, have long been investigated. In the disposal of radioactive wastes, the protection of non-human species has been investigated. Yet no radiation protection standard for exposure of animals and plants per se has been agreed. The International Commission on Radiological Protection has long taken the view that, if human beings are properly protected from radiation, other species will thereby be protected to the extent necessary for their preservation. However, the International Atomic Energy Agency has found it necessary to investigate the protection of non-human species where radioactivity is released to an environment unpopulated by human beings. It is proposed that the basis of such protection, and the knowledge of radiation effects on non-human species on which it is based, suggest a practical radiation protection standard for non-human species. (1 tab.)

  19. On the Mass Distribution of Animal Species

    Science.gov (United States)

    Redner, Sidney; Clauset, Aaron; Schwab, David

    2009-03-01

    We develop a simple diffusion-reaction model to account for the broad and asymmetric distribution of adult body masses for species within related taxonomic groups. The model assumes three basic evolutionary features that control body mass: (i) a fixed lower limit that is set by metabolic constraints, (ii) a species extinction risk that is a weakly increasing function of body mass, and (iii) cladogenetic diffusion, in which daughter species have a slight tendency toward larger mass. The steady-state solution for the distribution of species masses in this model can be expressed in terms of the Airy function. This solution gives mass distributions that are in good agreement with data on 4002 terrestrial mammal species from the late Quaternary and 8617 extant bird species.

  20. Aging and immortality in unicellular species.

    Science.gov (United States)

    Florea, Michael

    2017-10-01

    It has been historically thought that in conditions that permit growth, most unicellular species do not to age. This was particularly thought to be the case for symmetrically dividing species, as such species lack a clear distinction between the soma and the germline. Despite this, studies of the symmetrically dividing species Escherichia coli and Schizosaccharomyces pombe have recently started to challenge this notion. They indicate that E. coli and S. pombe do age, but only when subjected to environmental stress. If true, this suggests that aging may be widespread among microbial species in general, and that studying aging in microbes may inform other long-standing questions in aging. This review examines the recent evidence for and against replicative aging in symmetrically dividing unicellular organisms, the mechanisms that underlie aging, why aging evolved in these species, and how microbial aging fits into the context of other questions in aging. Copyright © 2017 Elsevier B.V. All rights reserved.

  1. Costs Associated with Endangered Species Act Compliance

    Science.gov (United States)

    2013-08-01

    August 2013 2 on economic costs or values related to endangered species costs or values, focuses primarily on Contingent Valuation Method studies...of species preservation (Lew, Layton, and Rowe 2010; Wallmo 2006). Most studies consider public valuation of species preservation, and not costs of...2012, NMFS 2006, U.S. Army Engineer, Mississippi Valley Division 2012, Kozlowski 1993, PFMC 2002) and through development of expenditure categories

  2. The transformer species of the Ukrainian Polissya

    Directory of Open Access Journals (Sweden)

    Protopopova Vira V.

    2015-09-01

    Full Text Available The investigation results of the transformer species participation (Echinocystis lobata (Michx. Torr. & A. Gray, Heracleum sosnowskyi Manden., Impatiens glandulifera Royle, I. parviflora DC., Reynoutria japonica Houtt., Robinia pseudoacacia L. in different plant communities of the Ukrainian Polissya (Forest zone of Ukraine are presented. All the abovementioned species are strong edificators in the region that can significantly change important species composition parameters of communities and character of landscape.

  3. Species - San Diego Co. [ds121

    Data.gov (United States)

    California Natural Resource Agency — This is the Biological Observation Database point layer representing baseline observations of sensitive species (as defined by the MSCP) throughout San Diego County....

  4. Biological species in the viral world.

    Science.gov (United States)

    Bobay, Louis-Marie; Ochman, Howard

    2018-06-05

    Due to their dependence on cellular organisms for metabolism and replication, viruses are typically named and assigned to species according to their genome structure and the original host that they infect. But because viruses often infect multiple hosts and the numbers of distinct lineages within a host can be vast, their delineation into species is often dictated by arbitrary sequence thresholds, which are highly inconsistent across lineages. Here we apply an approach to determine the boundaries of viral species based on the detection of gene flow within populations, thereby defining viral species according to the biological species concept (BSC). Despite the potential for gene transfer between highly divergent genomes, viruses, like the cellular organisms they infect, assort into reproductively isolated groups and can be organized into biological species. This approach revealed that BSC-defined viral species are often congruent with the taxonomic partitioning based on shared gene contents and host tropism, and that bacteriophages can similarly be classified in biological species. These results open the possibility to use a single, universal definition of species that is applicable across cellular and acellular lifeforms.

  5. Use of species-specific PCR for the identification of 10 sea cucumber species

    Science.gov (United States)

    Wen, Jing; Zeng, Ling

    2014-11-01

    We developed a species-specific PCR method to identify species among dehydrated products of 10 sea cucumber species. Ten reverse species-specific primers designed from the 16S rRNA gene, in combination with one forward universal primer, generated PCR fragments of ca. 270 bp length for each species. The specificity of the PCR assay was tested with DNA of samples of 21 sea cucumber species. Amplification was observed in specific species only. The species-specific PCR method we developed was successfully applied to authenticate species of commercial products of dehydrated sea cucumber, and was proven to be a useful, rapid, and low-cost technique to identify the origin of the sea cucumber product.

  6. Relating species abundance distributions to species-area curves in two Mediterranean-type shrublands

    Science.gov (United States)

    Keeley, Jon E.

    2003-01-01

    Based on both theoretical and empirical studies there is evidence that different species abundance distributions underlie different species-area relationships. Here I show that Australian and Californian shrubland communities (at the scale from 1 to 1000 m2) exhibit different species-area relationships and different species abundance patterns. The species-area relationship in Australian heathlands best fits an exponential model and species abundance (based on both density and cover) follows a narrow log normal distribution. In contrast, the species-area relationship in Californian shrublands is best fit with the power model and, although species abundance appears to fit a log normal distribution, the distribution is much broader than in Australian heathlands. I hypothesize that the primary driver of these differences is the abundance of small-stature annual species in California and the lack of annuals in Australian heathlands. Species-area is best fit by an exponential model in Australian heathlands because the bulk of the species are common and thus the species-area curves initially rise rapidly between 1 and 100 m2. Annuals in Californian shrublands generate very broad species abundance distributions with many uncommon or rare species. The power function is a better model in these communities because richness increases slowly from 1 to 100 m2 but more rapidly between 100 and 1000 m2due to the abundance of rare or uncommon species that are more likely to be encountered at coarser spatial scales. The implications of this study are that both the exponential and power function models are legitimate representations of species-area relationships in different plant communities. Also, structural differences in community organization, arising from different species abundance distributions, may lead to different species-area curves, and this may be tied to patterns of life form distribution.

  7. Two new species of nocturnal bees of the genus Megalopta (Hymenoptera: Halictidae) with keys to species.

    Science.gov (United States)

    Gonzalez, Victor H; Griswold, Terry; Ayala, Ricardo

    2010-03-01

    Megalopta Smith, 1853, is a Neotropical genus of nocturnal or crepuscular bees. Two subgenera are recognized with most of its nearly 30 species placed in the nominate subgenus. Species of Megalopta s. str. are more commonly collected than species of Noctoraptor Engel et al. 1997, all presumably parasites of Megalopta s. str. Two new species of Megalopta are described here: M. (Megalopta) tetewana, n. sp., from Mexico and M. (Noctoraptor) huaoranii, n. sp., from Ecuador. Identification keys to the Central American species of Megalopta s. str. and the species of the parasitic subgenus Noctoraptor are presented.

  8. The species velocity of trees in Alaska

    Science.gov (United States)

    Morrison, B. D.; Napier, J.; de Lafontaine, G.; Heath, K.; Li, B.; Hu, F.; Greenberg, J. A.

    2017-12-01

    Anthropogenic climate change has motivated interest in the paleo record to enhance our knowledge about past vegetation responses to climate change and help understand potential responses in the future. Additionally, polar regions currently experience the most rapid rates of climate change globally, prompting concern over changes in the ecological composition of high latitude ecosystems. Recent analyses have attempted to construct methods to estimate a species' ability to track climate change by computing climate velocity; a measure of the rate of climate displacement across a landscape which may indicate the speed an organism must migrate to keep pace with climate change. However, a challenge to using climate velocity in understanding range shifts is a lack of species-specificity in the velocity calculations: climate velocity does not actually use any species data in its analysis. To solve the shortcomings of climate velocity in estimating species displacement rates, we computed the "species velocity" of white spruce, green and grey alder populations across the state of Alaska from the Last Glacial Maximum (LGM) to today. Species velocity represents the rate and direction a species is required to migrate to keep pace with a changing climate following the LGM. We used a species distribution model to determine past and present white spruce and alder distributions using statistically downscaled climate data at 60m. Species velocity was then derived from the change in species distribution per year by the change in distribution over Alaska (km/yr). High velocities indicate locations where the species environmental envelope is changing drastically and must disperse rapidly to survive climate change. As a result, high velocity regions are more vulnerable to distribution shifts and higher risk of local extinction. Conversely, low species velocities indicate locations where the local climate envelope is shifting relatively slowly, reducing the stress to disperse quickly

  9. Evaluating species richness: biased ecological inference results from spatial heterogeneity in species detection probabilities

    Science.gov (United States)

    McNew, Lance B.; Handel, Colleen M.

    2015-01-01

    Accurate estimates of species richness are necessary to test predictions of ecological theory and evaluate biodiversity for conservation purposes. However, species richness is difficult to measure in the field because some species will almost always be overlooked due to their cryptic nature or the observer's failure to perceive their cues. Common measures of species richness that assume consistent observability across species are inviting because they may require only single counts of species at survey sites. Single-visit estimation methods ignore spatial and temporal variation in species detection probabilities related to survey or site conditions that may confound estimates of species richness. We used simulated and empirical data to evaluate the bias and precision of raw species counts, the limiting forms of jackknife and Chao estimators, and multi-species occupancy models when estimating species richness to evaluate whether the choice of estimator can affect inferences about the relationships between environmental conditions and community size under variable detection processes. Four simulated scenarios with realistic and variable detection processes were considered. Results of simulations indicated that (1) raw species counts were always biased low, (2) single-visit jackknife and Chao estimators were significantly biased regardless of detection process, (3) multispecies occupancy models were more precise and generally less biased than the jackknife and Chao estimators, and (4) spatial heterogeneity resulting from the effects of a site covariate on species detection probabilities had significant impacts on the inferred relationships between species richness and a spatially explicit environmental condition. For a real dataset of bird observations in northwestern Alaska, the four estimation methods produced different estimates of local species richness, which severely affected inferences about the effects of shrubs on local avian richness. Overall, our results

  10. Species-specific associations between overstory and understory tree species in a semideciduous tropical forest

    Directory of Open Access Journals (Sweden)

    Flaviana Maluf Souza

    2015-03-01

    Full Text Available We investigated the occurrence of associations between overstory and understory tree species in a semideciduous tropical forest. We identified and measured all trees of nine canopy species with diameter at breast height ≥4.8 cm in a 10.24 ha plot and recorded all individuals beneath their canopies ("understory individuals" within the same diameter class. The total density of understory individuals did not significantly differ under different overstory species. One overstory species (Ceiba speciosa showed higher understory species richness compared with five other species. There was a strong positive association between three overstory species (Esenbeckia leiocarpa, Savia dictyocarpa, and C. speciosa and the density of seven understory species (Balfourodendron riedelianum, Chrysophyllum gonocarpum, E. leiocarpa, Holocalyx balansae, Machaerium stipitatum, Rhaminidium elaeocarpum, and S. dictyocarpa. These results probably reflect the outcome of a complex set of interactions including facilitation and competition, and further studies are necessary to better understand the magnitude and type of the effects of individual overstory species on understory species. The occurrence of species-specific associations shown here reinforces the importance of non-random processes in structuring plant communities and suggest that the influence of overstory species on understory species in high-diversity forests may be more significant than previously thought.

  11. New Species of Orchids from Vietnam

    Directory of Open Access Journals (Sweden)

    Leonid V. Averyanov

    2007-12-01

    Full Text Available Identification of herbarium specimens collected in course of field exploration works in Vietnam during 2005-2007 revealed ten species of orchids new for science. Illustrated descriptions are provided for each discovered species, which are named as Anoectochilus papillosus, Arundina caespitosa, Bulbophyllum paraemarginatum, B. sinhoënse, Cheirostylis foliosa, Goodyera rhombodoides, Liparis rivularis, Oberonia multidentata, O. trichophora and Sunipia nigricans.

  12. Xanthomendoza borealis - a bipolar lichen species

    DEFF Research Database (Denmark)

    LIndblom, Louise; Søchting, Ulrik

    It has been uncertain whether the two xanthorioid taxa known as Xanthoria mawsonii and Xanthomen-doza borealis truly are distinct species or if they should best be treated as one species. They are morphologically very similar, but inhabit two disjunct geographical areas, that is, circumpolar on t...

  13. Rapid molecular technique to distinguish Fusarium species

    CSIR Research Space (South Africa)

    Lodolo, EJ

    1993-03-01

    Full Text Available The nuclear DNA (nDNA) of different isolates of three closely related, toxin-producing Fusarium species, F. moniliforme, F. nygamai and F. napiforme, was compared to ascertain the sensitivity of a molecular method to distinguish these three species...

  14. Antibiotic susceptibilities of Salmonella species prevalent among ...

    African Journals Online (AJOL)

    This study was conducted to assess the prevalence of Salmonella species among children having diarrhea in Katsina State, Nigeria. A total of 220 diarrhea stool samples of children aged five years and below (0-5 years) were collected and screened for Salmonella species using culture technique. Presumptively positive ...

  15. In vitro propagation of Fraxinus species

    Science.gov (United States)

    J.W. Van Sambeek; J.E. Preece

    2007-01-01

    The genus Fraxinus, a member of the Oleaceae family, includes over 65 ash species native to the temperate regions of the northern hemisphere (Miller, 1955). Several of the ash species are important forest trees noted for their tough, highly resistant to shock, straight grained wood as well as being excellent shade trees for parks and residential...

  16. Molecular characterization of thermophilic Campylobacter species ...

    African Journals Online (AJOL)

    We identified two species of thermophilic Campylobacter in companion dogs in Jos. Majority of C. jejuni were isolated from mucoid faeces while mixed infections of the two species were more common among diarrhoeic dogs. Pet owners should observe strict hand hygiene especially after handling dogs or their faeces to ...

  17. Two New American Species of Hordeum (Poaceae)

    DEFF Research Database (Denmark)

    Bothmer, Roland Von; Jacobsen, Niels; Bagger Jørgensen, Rikke

    1985-01-01

    Two new species of Hordeum are described, viz. the diploid H. erectifolium, native to Argentina, and H. guatemalense, native to Guatemala.......Two new species of Hordeum are described, viz. the diploid H. erectifolium, native to Argentina, and H. guatemalense, native to Guatemala....

  18. New and noteworthy Malesian species of Loranthaceae

    NARCIS (Netherlands)

    Barlow, Bryan A.

    1995-01-01

    Ten new or noteworthy Malesian species of Loranthaceae are discussed. The known area of the relictual Cecarria obtusifolia (Merrill) Barlow is increased to include Flores and Timor. Dendrophthoe curvata (Blume) Miquel is accepted as a distinct species. The status of Dendrophthoe falcata (L. f.)

  19. On two new species of Cercopithecus

    NARCIS (Netherlands)

    Jentink, F.A.

    1886-01-01

    In 1877 our Museum received a Cercopithecus died in the Zoological Garden at Rotterdam. Professor Schlegel thought it to be a new species and called it Cercopithecus signatus, but he never described it. As it seems to me to be a very good species I describe it under the name given by Schlegel. It

  20. Species diversity of Trichoderma in Poland

    Science.gov (United States)

    Fifteen species of Trichoderma were identified from among 118 strains originating from different regions and ecological niches in Poland. This low number indicates low species diversity of Trichoderma in this Central European region. Using the ITS1-ITS2 regions, 64 strains were positively identified...

  1. Prevalence of Cryptosporidium species and Giardia intestinalis ...

    African Journals Online (AJOL)

    Cryptosporidium species and Giardia intestinalis cause diarrheal infections in humans and other vertebrate animals globally and are considered to be of great public health importance. The study was conducted to determine the prevalence Cryptosporidium species and G. intestinalis infections among patients attending ...

  2. New species of haematozoa in Phalacrocoracidae and ...

    African Journals Online (AJOL)

    New species of haematozoa, namely Leucocytozoon ugwidi sp. nov. from the Cape Cormorant Phalacrocorax capensis and Haemoproteus skuae sp. nov. from the Subantarctic Skua Catharacta antarctica, are described. These are the first species to be recorded from the families Phalacrocoracidae and Stercorariidae, ...

  3. Metabolite production by differnt Ulocladium species

    DEFF Research Database (Denmark)

    Andersen, Birgitte; Hollensted, Morten

    2008-01-01

    Ulocladium, which is phylogenetically related to Alternaria, contains species that are food spoilers and plant pathogens, but also species that have potential as enzyme producers and bio-control agents. Ulocladium spp. are often found on dead vegetation, in soil, air and dust, but also on food...

  4. Species hybridization in the genus Pinus

    Science.gov (United States)

    Peter W. Garrett

    1979-01-01

    Results of a breeding program in which a large number of pine species were tested indicate that a number of species and hybrids may be useful in the northeastern United States. Austrian black pine x Japanese black pine and hybrids containing Japanese red pine all had good growth rates. While none of the soft pines grew faster than eastern white pine, a number of...

  5. Toward reassessing data-deficient species.

    Science.gov (United States)

    Bland, Lucie M; Bielby, Jon; Kearney, Stephen; Orme, C David L; Watson, James E M; Collen, Ben

    2017-06-01

    One in 6 species (13,465 species) on the International Union for Conservation of Nature (IUCN) Red List is classified as data deficient due to lack of information on their taxonomy, population status, or impact of threats. Despite the chance that many are at high risk of extinction, data-deficient species are typically excluded from global and local conservation priorities, as well as funding schemes. The number of data-deficient species will greatly increase as the IUCN Red List becomes more inclusive of poorly known and speciose groups. A strategic approach is urgently needed to enhance the conservation value of data-deficient assessments. To develop this, we reviewed 2879 data-deficient assessments in 6 animal groups and identified 8 main justifications for assigning data-deficient status (type series, few records, old records, uncertain provenance, uncertain population status or distribution, uncertain threats, taxonomic uncertainty, and new species). Assigning a consistent set of justification tags (i.e., consistent assignment to assessment justifications) to species classified as data deficient is a simple way to achieve more strategic assessments. Such tags would clarify the causes of data deficiency; facilitate the prediction of extinction risk; facilitate comparisons of data deficiency among taxonomic groups; and help prioritize species for reassessment. With renewed efforts, it could be straightforward to prevent thousands of data-deficient species slipping unnoticed toward extinction. © 2016 Society for Conservation Biology.

  6. Preliminary observations on the species composition and ...

    African Journals Online (AJOL)

    Majority of the mushrooms appear during the rain season and are equally available during the short and long rains. This suggests that most species will grow well throughout the year whenever moisture level in the substrate is adequate irrespective of the season. Some of the species especially the Polypores (Ganoderma ...

  7. Taxonomy of Penicillium citrinum and related species

    NARCIS (Netherlands)

    Houbraken, J.; Frisvad, J.C.; Samson, R.A.

    2010-01-01

    Penicillium citrinum and related species have been examined using a combination of partial beta-tubulin, calmodulin and ITS sequence data, extrolite patterns and phenotypic characters. It is concluded that seven species belong to the series Citrina. Penicillium sizovae and Penicillium steckii are

  8. Some new or noteworthy species of Mortierella

    NARCIS (Netherlands)

    Gams, W.

    1976-01-01

    Twenty-two species of Mortierella are described and distributed over the sections defined by Gams (1970) which include the following new species: Section Pusilla: M. roseo-nana; Section Alpina: M. globalpina and M. polygonia Section Simplex: M. amoeboidea; Section Hygrophila : M. elongatula, M.

  9. DNA species surveillance: Monitoring bushmeat poaching and ...

    African Journals Online (AJOL)

    DNA species identification has applications in such areas as forensic science, systematics, conservation genetics and agriculture. One key anthropogenic activity threatening large wildlife fauna is illegal exploitation. In Kenya, species identification of raw and processed meat products remains a constraint to effective ...

  10. Distribution of crayfish species in Hungarian waters

    NARCIS (Netherlands)

    Mercédesz, Ludányi; Peeters, E.T.H.M.; Kiss, B.; Roessink, I.

    2016-01-01

    Three native crayfish species, i.e.~Astacus astacus, Astacus leptodactylus and Austropotamobius torrentium, occur in Hungary. Lately, however, non-indigenous crustaceans have also invaded the country Their most recent distribution and impact on the occurrences of the native species is not clear.

  11. Grain Unloading Of Arsenic Species In Rice

    Science.gov (United States)

    Rice (Oryza sativa) is the staple food for over half the world's population yet may represent a significant dietary source of inorganic arsenic (As), a nonthreshold, class 1 human carcinogen. Rice grain As is dominated by the inorganic species, and the organic species dim...

  12. SERI Aquatic Species Program: 1983 Annual Report

    Energy Technology Data Exchange (ETDEWEB)

    1984-03-01

    During 1983 research was carried out under three tasks: biological, engineering, and analysis. Biological research was aimed at screening for promising species of microalgae, macroalgae, and emergent plants that could be cultivated for energy products. Promising species were studied further to improve yields.

  13. ENDANGERED SPECIES SENSITIVITY AND ECOLOGICAL RISK ASSESSMENT

    Science.gov (United States)

    he U.S. Environmental Protection Agency (EPA), U.S. Fish & Wildlife Service, and National Marine Fisheries Service share a common responsibility for the protection of our nation's aquatic species under the Endangered Species Act (ESA) of 1973. The EPA, under the Federal Insectici...

  14. antimicrobial susceptibility pattern of Salmonella species

    African Journals Online (AJOL)

    user

    ABSTRACT. Treatment of enteric fever is increasingly becoming very challenging due to the increasing wave of antibiotic resistance. This study is a review of the contemporary antimicrobial susceptibility pattern of. Salmonella species. The antimicrobial susceptibility pattern of Salmonella species to a wide range of.

  15. Endangered Species (Plants). LC Science Tracer Bullet.

    Science.gov (United States)

    Niskern, Diana, Comp.

    This guide is intended for those who wish to study the literature dealing with various aspects of endangered plant species. This document includes the following sections, some of which are bibliographies: (1) "Introductions to the Topic"; (2) "Subject Headings" (for endangered species of plants used by the Library of Congress); (3) "General…

  16. Endangered Species: Real Life in Two Dimensions

    Science.gov (United States)

    Henderson, Lynette K.

    2012-01-01

    The focus of "Endangered Species: Real Life in Two Dimensions" is to create awareness about a critical environmental issue. There is a special urgency to this project because large numbers of animal species are currently endangered or on the brink of extinction. In addition to being enlightened about this important topic through research, students…

  17. Multiple bacterial species reside in chronic wounds

    DEFF Research Database (Denmark)

    Gjødsbøl, Kristine; Christensen, Jens Jørgen; Karlsmark, Tonny

    2006-01-01

    species present were identified. More than one bacterial species were detected in all the ulcers. The most common bacteria found were Staphylococcus aureus (found in 93.5% of the ulcers), Enterococcus faecalis (71.7%), Pseudomonas aeruginosa (52.2%), coagulase-negative staphylococci (45.7%), Proteus...

  18. Multiplexed microsatellite markers for seven Metarhizium species

    Science.gov (United States)

    Cross-species transferability of 41 previously published simple sequence repeat (SSR) markers was assessed for 11 species of the entomopathogenic fungus Metarhizium. A collection of 65 Metarhizium isolates including all 54 used in a recent phylogenetic revision of the genus were characterized. Betwe...

  19. The Invasive Plant Species Education Guide

    Science.gov (United States)

    Mason, Kevin; James, Krista; Carlson, Kitrina; D'Angelo, Jean

    2010-01-01

    To help high school students gain a solid understanding of invasive plant species, university faculty and students from the University of Wisconsin-Stout (UW-Stout) and a local high school teacher worked together to develop the Invasive Plant Species (IPS) Education Guide. The IPS Education Guide includes nine lessons that give students an…

  20. The Drosophila bipectinata species complex: phylogenetic ...

    Indian Academy of Sciences (India)

    Navya

    *For Correspondence. e-mail: bashisthsingh2004@rediffmail.com, ... A species complex constitutes groups of closely related species which have diverged ..... there is a strong reproductive isolation too (See review by Singh and Banerjee 2016) .... figure both the loops touch the chromocenter and in our microphotograph ...

  1. CONSERVATION PROGRAMS THAT PROMOTE INVASIVE SPECIES

    Science.gov (United States)

    Invasive plant species are degrading the structure and function of ecosystems throughout the world. Although most state and federal conservation agencies in the U.S. attempt to reduce the impact of invasive species, some agency activities can contribute to the spread of invasive...

  2. Invasive plant species in hardwood tree plantations

    Science.gov (United States)

    Rochelle R. Beasley; Paula M. Pijut

    2010-01-01

    Invasive plants are species that can grow and spread aggressively, mature quickly, and invade an ecosystem causing economic and environmental damage. Invasive plants usually invade disturbed areas, but can also colonize small areas quickly, and may spread and dominate large areas in a few short years. Invasive plant species displace native or desirable forest...

  3. New species of Maerua (Capparaceae) from Angola

    NARCIS (Netherlands)

    Abreu, J.A.; Martins, E.S.; Catarino, L.

    2014-01-01

    Genus Maerua has around 60 species represented on the African continent, of which three have been reported for Angola. Two new species of Maerua (Capparaceae) from Angola are here described. Both are closely similar to M. juncea subsp. juncea, being distinguished by floral traits such as the

  4. 76 FR 30955 - Invasive Species Advisory Committee

    Science.gov (United States)

    2011-05-27

    ... Commerce. The duty of the Council is to provide national leadership regarding invasive species issues... broad array of issues related to preventing the introduction of invasive species and providing for their... with Western-based scientists and practitioners on problems and potential solutions, as well as...

  5. Fatal attraction: rare species in the spotlight.

    Science.gov (United States)

    Angulo, Elena; Deves, Anne-Laure; Saint Jalmes, Michel; Courchamp, Franck

    2009-04-07

    The exploitation of rare and endangered species can end in the species's extinction because the increased value people associate with rarity increases the economic incentive to exploit the last individuals, creating a positive feedback loop. This recently proposed concept, called the anthropogenic Allee effect (AAE), relies on the assumption that people do value rarity, but this remains to be established. Moreover, it also remains to be determined whether attraction to rarity is a trait confined to a minority of hobbyists (e.g. wildlife collectors, exotic pet owners) or characteristic of the general public. We estimated how much the general public valued rare species compared with common ones, using five different metrics related to personal investment: time spent, physical effort, unpleasantness, economic investment and risk. We surveyed the visitors of a zoo. To see the rare species, the visitors to the zoo invested more time in searching and contemplation, they were ready to expend more physical effort, they tolerated more unpleasant conditions, they were willing to pay more and, finally, they risked more to obtain (steal) a rare species. Our results provide substantial evidence of how the general public places more value on rare species, compared with common species. This confirms the AAE as an actual process, which in addition concerns a large part of the population. This has important consequences for the conservation of species that are rare now, or that could become so in the future.

  6. Characterization of Aspergillus species associated with ...

    African Journals Online (AJOL)

    About 82 triphala powder samples were analyzed for the association of different fungi. Results reveal the predominance of Aspergillus as the major genera with six predominant species namely, A. niger, A. flavus, A. fumigatus, A. terreus, A. nidulans and A. amstelodami. Therefore, these six isolated Aspergillus species were ...

  7. Novel Pestivirus Species in Pigs, Austria, 2015.

    Science.gov (United States)

    Lamp, Benjamin; Schwarz, Lukas; Högler, Sandra; Riedel, Christiane; Sinn, Leonie; Rebel-Bauder, Barbara; Weissenböck, Herbert; Ladinig, Andrea; Rümenapf, Till

    2017-07-01

    A novel pestivirus species was discovered in a piglet-producing farm in Austria during virologic examinations of congenital tremor cases. The emergence of this novel pestivirus species, provisionally termed Linda virus, in domestic pigs may have implications for classical swine fever virus surveillance and porcine health management.

  8. Emergent neutrality drives phytoplankton species coexistence

    Science.gov (United States)

    Segura, Angel M.; Calliari, Danilo; Kruk, Carla; Conde, Daniel; Bonilla, Sylvia; Fort, Hugo

    2011-01-01

    The mechanisms that drive species coexistence and community dynamics have long puzzled ecologists. Here, we explain species coexistence, size structure and diversity patterns in a phytoplankton community using a combination of four fundamental factors: organism traits, size-based constraints, hydrology and species competition. Using a ‘microscopic’ Lotka–Volterra competition (MLVC) model (i.e. with explicit recipes to compute its parameters), we provide a mechanistic explanation of species coexistence along a niche axis (i.e. organismic volume). We based our model on empirically measured quantities, minimal ecological assumptions and stochastic processes. In nature, we found aggregated patterns of species biovolume (i.e. clumps) along the volume axis and a peak in species richness. Both patterns were reproduced by the MLVC model. Observed clumps corresponded to niche zones (volumes) where species fitness was highest, or where fitness was equal among competing species. The latter implies the action of equalizing processes, which would suggest emergent neutrality as a plausible mechanism to explain community patterns. PMID:21177680

  9. Finessing atlas data for species distribution models

    NARCIS (Netherlands)

    Niamir, A.; Skidmore, A.K.; Toxopeus, A.G.; Munoz, A.R.; Real, R.

    2011-01-01

    Aim The spatial resolution of species atlases and therefore resulting model predictions are often too coarse for local applications. Collecting distribution data at a finer resolution for large numbers of species requires a comprehensive sampling effort, making it impractical and expensive. This

  10. 77 FR 70456 - Receipt of Applications for Endangered Species Permits

    Science.gov (United States)

    2012-11-26

    ...: TE-13844A Applicant: Aquatic Resources Management, Lexington, Kentucky. Applicant requests amendment... fish species, twelve (12) fresh-water mussel species, one (1) snake species, one (1) insect species and...

  11. ALIEN SPECIES: THEIR ROLE IN AMPHIBIAN POPULATION DECLINES AND RESTORATION

    Science.gov (United States)

    Alien species (also referred to as exotic, invasive, introduced, or normative species) have been implicated as causal agents in population declines of many amphibian species. Herein, we evaluate the relative contributions of alien species and other factors in adversely affecting ...

  12. Biodiversity hotspots house most undiscovered plant species.

    Science.gov (United States)

    Joppa, Lucas N; Roberts, David L; Myers, Norman; Pimm, Stuart L

    2011-08-09

    For most organisms, the number of described species considerably underestimates how many exist. This is itself a problem and causes secondary complications given present high rates of species extinction. Known numbers of flowering plants form the basis of biodiversity "hotspots"--places where high levels of endemism and habitat loss coincide to produce high extinction rates. How different would conservation priorities be if the catalog were complete? Approximately 15% more species of flowering plant are likely still undiscovered. They are almost certainly rare, and depending on where they live, suffer high risks of extinction from habitat loss and global climate disruption. By using a model that incorporates taxonomic effort over time, regions predicted to contain large numbers of undiscovered species are already conservation priorities. Our results leave global conservation priorities more or less intact, but suggest considerably higher levels of species imperilment than previously acknowledged.

  13. New species in Aspergillus section Terrei

    DEFF Research Database (Denmark)

    Samson, R. A.; Peterson, S. W.; Frisvad, Jens Christian

    2011-01-01

    . clade including the type isolate of A. niveus (CBS 115.27) constitutes a lineage closely related to A. carneus. Fennellia nivea, the hypothesized teleomorph is not related to this clade. Aspergillus allahabadii, A. niveus var. indicus, and two species originally placed in section Versicolores, A......Section Terrei of Aspergillus was studied using a polyphasic approach including sequence analysis of parts of the beta-tubulin and calmodulin genes and the ITS region, macro- and micromorphological analyses and examination of extrolite profiles to describe three new species in this section. Based....... floccosus, A. terreus var. africanus, A. terreus var. aureus, while Aspergillus hortai is recognised at species level. Aspergillus terreus NRRL 4017 is described as the new species A. pseudoterreus. Also included in section Terrei are some species formerly placed in sections Flavipedes and Versicolores. A...

  14. Actinomyces Species Isolated from Breast Infections

    Science.gov (United States)

    Loh, S. F.; Morris, T.; Hughes, H.; Dixon, J. M.

    2015-01-01

    Actinomycosis is a chronic infection caused by Actinomyces species characterized by abscess formation, tissue fibrosis, and draining sinuses. The spectrum of infections caused by Actinomyces species ranges from classical invasive actinomycosis to a less invasive form of superficial skin and soft tissue infection. We present a review detailing all Actinomyces species isolated from breast infections in NHS Lothian between 2005 and 2013, Actinomyces species isolated from breast infections referred to the United Kingdom Anaerobe Reference Unit between 1988 and 2014, and cases describing Actinomyces breast infections published in the medical literature since 1994. Actinomyces species are fastidious organisms which can be difficult to identify and are likely to be underascertained as a cause of breast infections. Due to improved diagnostic methods, they are increasingly associated with chronic, recurrent breast infections and may play a more significant role in these infections than has previously been appreciated. PMID:26224846

  15. Region effects influence local tree species diversity.

    Science.gov (United States)

    Ricklefs, Robert E; He, Fangliang

    2016-01-19

    Global patterns of biodiversity reflect both regional and local processes, but the relative importance of local ecological limits to species coexistence, as influenced by the physical environment, in contrast to regional processes including species production, dispersal, and extinction, is poorly understood. Failure to distinguish regional influences from local effects has been due, in part, to sampling limitations at small scales, environmental heterogeneity within local or regional samples, and incomplete geographic sampling of species. Here, we use a global dataset comprising 47 forest plots to demonstrate significant region effects on diversity, beyond the influence of local climate, which together explain more than 92% of the global variation in local forest tree species richness. Significant region effects imply that large-scale processes shaping the regional diversity of forest trees exert influence down to the local scale, where they interact with local processes to determine the number of coexisting species.

  16. The Porphyra species of Helgoland (Bangiales, Rhodophyta)

    Science.gov (United States)

    Kornmann, P.; Sahling, P.-H.

    1991-03-01

    This revision of seven Porphyra species of Helgoland was based on a study of the structure of their fertile thalli and the behaviour of their spores. Regarding the reproductive organization the species may be arranged in two groups. P. leucosticta and P. purpureo-violacea are obligate monoecious species. Asexual thalli have never been observed in the field. The other five species are generally dioecious. Isomorphic sexual thalli and asexually propagating ones are mixed in uniform populations. Carpospores originating from sexual fusion develop into the diploid Conchocelis phase. Sporangia of asexual plants, though homologous in formation, produce spores of different kinds: aplanospores that give rise to the vegetative thallus directly (in P. umbilicalis, P. insolita n. sp. and P. ochotensis) and spores that develop into haploid Conchocelis (in P. laciniata and in P. linearis). P. laciniata — formerly considered synonymous with P. purpurea — is an independent species.

  17. Effects of species' characteristics on nongovernmental organizations' attitudes toward species conservation policy

    NARCIS (Netherlands)

    Knegtering, E; Hendrickx, L.C W P; van der Windt, H.J.; Schoot Uiterkamp, A.J.M.

    The authors examined the willingness of nongovernmental organizations (NGOs) to support public species conservation measures as a function of species characteristics, NGOs' interests, and interests harmed by the measures. In an experiment, 39 policy makers from nature conservation, mobility and

  18. ConSpeciFix: Classifying prokaryotic species based on gene flow.

    Science.gov (United States)

    Bobay, Louis-Marie; Ellis, Brian Shin-Hua; Ochman, Howard

    2018-05-16

    Classification of prokaryotic species is usually based on sequence similarity thresholds, which are easy to apply but lack a biologically-relevant foundation. Here, we present ConSpeciFix, a program that classifies prokaryotes into species using criteria set forth by the Biological Species Concept, thereby unifying species definition in all domains of life. ConSpeciFix's webserver is freely available at www.conspecifix.com. The local version of the program can be freely downloaded from https://github.com/Bobay-Ochman/ConSpeciFix. ConSpeciFix is written in Python 2.7 and requires the following dependencies: Usearch, MCL, MAFFT and RAxML. ljbobay@uncg.edu.

  19. Genetic sorting of subordinate species in grassland modulated by intraspecific variation in dominant species.

    Directory of Open Access Journals (Sweden)

    Danny J Gustafson

    Full Text Available Genetic variation in a single species can have predictable and heritable effects on associated communities and ecosystem processes, however little is known about how genetic variation of a dominant species affects plant community assembly. We characterized the genetic structure of a dominant grass (Sorghastrum nutans and two subordinate species (Chamaecrista fasciculata, Silphium integrifolium, during the third growing season in grassland communities established with genetically distinct (cultivated varieties or local ecotypes seed sources of the dominant grasses. There were genetic differences between subordinate species growing in the cultivar versus local ecotype communities, indicating that intraspecific genetic variation in the dominant grasses affected the genetic composition of subordinate species during community assembly. A positive association between genetic diversity of S. nutans, C. fasciculata, and S. integrifolium and species diversity established the role of an intraspecific biotic filter during community assembly. Our results show that intraspecific variation in dominant species can significantly modulate the genetic composition of subordinate species.

  20. New species of Moenkhausia Eigenmann, 1903 (Characiformes: Characidae with comments on the Moenkhausia oligolepis species complex

    Directory of Open Access Journals (Sweden)

    Ricardo C. Benine

    Full Text Available A new species of Moenkhausia is described from tributaries of the rio Paraguay, Brazil. The new species is diagnosed from congeners by characters related to body coloration, the number of lateral line scales, the degree of poring of the lateral line, and number of scales rows above and below the lateral line. Molecular analyses using partial sequences of the mitochondrial gene Cytochrome Oxidase I from specimens of the new species and specimens belonging to morphologically similar species demonstrated that the new species is easily differentiated by their high genetic distance and by their position in the phylogenetic hypothesis obtained through the Maximum Parsimony methodology. The analyses of three samples of M. oligolepis also revealed that they have high genetic distances and belong to different monophyletic groups suggesting that this species corresponds to a species complex rather than a single species.

  1. 75 FR 38069 - Injurious Wildlife Species; Listing the Boa Constrictor, Four Python Species, and Four Anaconda...

    Science.gov (United States)

    2010-07-01

    ... Python Species, and Four Anaconda Species as Injurious Reptiles AGENCY: Fish and Wildlife Service... regulations to add Indian python (Python molurus, including Burmese python Python molurus bivittatus), reticulated python (Broghammerus reticulatus or Python reticulatus), Northern African python (Python sebae...

  2. Spatial Complementarity and the Coexistence of Species

    Science.gov (United States)

    Velázquez, Jorge; Garrahan, Juan P.; Eichhorn, Markus P.

    2014-01-01

    Coexistence of apparently similar species remains an enduring paradox in ecology. Spatial structure has been predicted to enable coexistence even when population-level models predict competitive exclusion if it causes each species to limit its own population more than that of its competitor. Nevertheless, existing hypotheses conflict with regard to whether clustering favours or precludes coexistence. The spatial segregation hypothesis predicts that in clustered populations the frequency of intra-specific interactions will be increased, causing each species to be self-limiting. Alternatively, individuals of the same species might compete over greater distances, known as heteromyopia, breaking down clusters and opening space for a second species to invade. In this study we create an individual-based model in homogeneous two-dimensional space for two putative sessile species differing only in their demographic rates and the range and strength of their competitive interactions. We fully characterise the parameter space within which coexistence occurs beyond population-level predictions, thereby revealing a region of coexistence generated by a previously-unrecognised process which we term the triadic mechanism. Here coexistence occurs due to the ability of a second generation of offspring of the rarer species to escape competition from their ancestors. We diagnose the conditions under which each of three spatial coexistence mechanisms operates and their characteristic spatial signatures. Deriving insights from a novel metric — ecological pressure — we demonstrate that coexistence is not solely determined by features of the numerically-dominant species. This results in a common framework for predicting, given any pair of species and knowledge of the relevant parameters, whether they will coexist, the mechanism by which they will do so, and the resultant spatial pattern of the community. Spatial coexistence arises from complementary combinations of traits in each

  3. Neosilba (Tephritoidea: Lonchaeidae) species reared from coffee in Brazil, with description of a new species

    Energy Technology Data Exchange (ETDEWEB)

    Striki, Pedro Carlos; Prado, Angelo Pires do, E-mail: apprado@unicamp.b [Universidade Estadual de Campinas (UNICAMP), SP (Brazil). Inst. de Biologia. Dept. de Parasitologia

    2006-07-01

    Neosilba species are believed to be secondary invaders of fruit, so, little attention has been paid to its presence in coffee fruits. In this article we present a key to Neosilba species present in coffee fruits and describe a new species that is considered a primary invader. We hope this will help researchers working with coffee fruits to better quantify the economic importance of Neosilba species associated with coffee fruits. (author)

  4. Neosilba (Tephritoidea: Lonchaeidae) species reared from coffee in Brazil, with description of a new species

    International Nuclear Information System (INIS)

    Striki, Pedro Carlos; Prado, Angelo Pires do

    2006-01-01

    Neosilba species are believed to be secondary invaders of fruit, so, little attention has been paid to its presence in coffee fruits. In this article we present a key to Neosilba species present in coffee fruits and describe a new species that is considered a primary invader. We hope this will help researchers working with coffee fruits to better quantify the economic importance of Neosilba species associated with coffee fruits. (author)

  5. Two new species of nocturnal bees of the genus Megalopta (Hymenoptera: Halictidae) with keys to species

    OpenAIRE

    Gonzalez, Victor H; Griswold, Terry; Ayala, Ricardo

    2010-01-01

    Megalopta Smith, 1853, is a Neotropical genus of nocturnal or crepuscular bees. Two subgenera are recognized with most of its nearly 30 species placed in the nominate subgenus. Species of Megalopta s. str. are more commonly collected than species of Noctoraptor Engel et al. 1997, all presumably parasites of Megalopta s. str. Two new species of Megalopta are described here: M. (Megalopta) tetewana, n. sp., from Mexico and M. (Noctoraptor) huaoranii, n. sp., from Ecuador. Identification keys to...

  6. Dna c-values of 20 invasive alien species and 3 native species in south china

    OpenAIRE

    Gong Ni; Wang Yu-Tao; Björn Lars Olof; Li Shao-Shan

    2014-01-01

    Cultivated fields and forests in South China are experiencing serious damage due to invasive alien plants. We investigated the relation between DNA C-values and invasiveness. The DNA C-values of 23 species ranged from 0.39 pg to 3.37 pg. Herbs, perennials and native species had higher mean DNA C-values than shrubs, annuals and invasive alien species. DNA C-values decreased with increasing invasiveness. Paederia scandens, a harmful native species, has the lo...

  7. Invading species in the Eel River, California: Successes, failures, and relationships with resident species

    Science.gov (United States)

    Brown, L.R.; Moyle, P.B.

    1997-01-01

    We examined invasions of non-native fishes into the Eel River, California. At least 16 species of fish have been introduced into the drainage which originally supported 12-14 fish species. Our study was prompted by the unauthorized introduction in 1979 of Sacramento squawfish, Ptychocheilus grandis, a large predatory cyprinid. From 1986 to 1990, we conducted growth and diet studies of squaw fish, conducted intensive surveys of the distribution and habitat associations of both native and introduced species, and examined the nature of species-habitat and interspecies relationships. We found no evidence for increased growth or expanded feeding habits, compared to native populations, of Sacramento squawfish as they invaded the Eel River drainage. Ten of the introduced species were well established, with four species limited to a reservoir and six species established in streams. The success or failure of introductions of stream species appeared to be a function of the ability of a species to survive the fluctuating, highly seasonal, flow regime. The present mixture of native and exotic species has not formed stable fish assemblages but it seems likely that four habitat-associated assemblages will develop. The overall effect of the successful species introductions has been to assemble a group of species, with some exceptions, that are native to and occur together in many California streams. The assemblages now forming are similar to those found in other California streams. The assemblage characterized by squawfish and suckers is likely to be resistant to invasion, in the absence of human caused habitat modifications.

  8. Rare species contribute disproportionately to the functional structure of species assemblages.

    Science.gov (United States)

    Leitão, Rafael P; Zuanon, Jansen; Villéger, Sébastien; Williams, Stephen E; Baraloto, Christopher; Fortunel, Claire; Mendonça, Fernando P; Mouillot, David

    2016-04-13

    There is broad consensus that the diversity of functional traits within species assemblages drives several ecological processes. It is also widely recognized that rare species are the first to become extinct following human-induced disturbances. Surprisingly, however, the functional importance of rare species is still poorly understood, particularly in tropical species-rich assemblages where the majority of species are rare, and the rate of species extinction can be high. Here, we investigated the consequences of local and regional extinctions on the functional structure of species assemblages. We used three extensive datasets (stream fish from the Brazilian Amazon, rainforest trees from French Guiana, and birds from the Australian Wet Tropics) and built an integrative measure of species rarity versus commonness, combining local abundance, geographical range, and habitat breadth. Using different scenarios of species loss, we found a disproportionate impact of rare species extinction for the three groups, with significant reductions in levels of functional richness, specialization, and originality of assemblages, which may severely undermine the integrity of ecological processes. The whole breadth of functional abilities within species assemblages, which is disproportionately supported by rare species, is certainly critical in maintaining ecosystems particularly under the ongoing rapid environmental transitions. © 2016 The Author(s).

  9. Protectiveness of Species Sensitivity Distribution Hazard Concentrations for Acute Toxicity Used in Endangered Species Risk Assessment

    Science.gov (United States)

    A primary objective of threatened and endangered species conservation is to ensure that chemical contaminants and other stressors do not adversely affect listed species. Assessments of the ecological risks of chemical exposures to listed species often rely on the use of surrogate...

  10. Tree structural and species diversities in Okwangwo Forest, Cross ...

    African Journals Online (AJOL)

    Tree species were grouped into abundance classes. A total of 125 tree species belonging to 36 families and 96 genera were recorded in the area with Margaleffs index of species richness of 2.2754. Most (99) of the tree species encountered were threatened/endangered, 23 species were rare with only 3 tree species ...

  11. Estimating tree species richness from forest inventory plot data

    Science.gov (United States)

    Ronald E. McRoberts; Dacia M. Meneguzzo

    2007-01-01

    Montreal Process Criterion 1, Conservation of Biological Diversity, expresses species diversity in terms of number of forest dependent species. Species richness, defined as the total number of species present, is a common metric for analyzing species diversity. A crucial difficulty in estimating species richness from sample data obtained from sources such as inventory...

  12. Identifying ambassador species for conservation marketing

    Directory of Open Access Journals (Sweden)

    E.A. Macdonald

    2017-10-01

    Full Text Available Conservation relies heavily on external funding, much of it from a supportive public. Therefore it is important to know which species are most likely to catalyse such funding. Whilst previous work has looked at the physical attributes that contribute to a species' appeal, no previous studies have tried to examine the extent to which a species' sympatriots might contribute to it's potential as flagship for wider conservation. Therefore, here we estimate ‘flexibility’ and ‘appeal’ scores for all terrestrial mammals (n = 4320 and identify which of these might serve as ambassadors (defined as both highly appealing and flexible. Relatively few mammals (between 240 and 331 emerged as ambassadors, with carnivores featuring heavily in this group (representing 5% of terrestrial mammals but 39% of ambassadors. ‘Top ambassadors’ were defined as those with both flexibility and appeal scores greater than 1 standard deviation above the mean. Less than a quarter of the 20 most endangered and evolutionary distinct species in this study were classed as ambassadors, highlighting the need for surrogate species to catalyse conservation effort in areas with such priority species. This is the first global analysis bringing together flexibility and appeal for all terrestrial mammals, and demonstrates an approach for determining how best to market species in order to achieve maximal conservation gain in a world with urgent conservation need but limited resources.

  13. Design and construction of "synthetic species".

    Directory of Open Access Journals (Sweden)

    Eduardo Moreno

    Full Text Available Synthetic biology is an area of biological research that combines science and engineering. Here, I merge the principles of synthetic biology and regulatory evolution to create a new species with a minimal set of known elements. Using preexisting transgenes and recessive mutations of Drosophila melanogaster, a transgenic population arises with small eyes and a different venation pattern that fulfils the criteria of a new species according to Mayr's Biological Species Concept. The population described here is the first transgenic organism that cannot hybridize with the original wild type population but remains fertile when crossed with other identical transgenic animals. I therefore propose the term "synthetic species" to distinguish it from "natural species", not only because it has been created by genetic manipulation, but also because it may never be able to survive outside the laboratory environment. The use of genetic engineering to design artificial species barriers could help us understand natural speciation and may have practical applications. For instance, the transition from transgenic organisms towards synthetic species could constitute a safety mechanism to avoid the hybridization of genetically modified animals with wild type populations, preserving biodiversity.

  14. Fusarium Species and Their Associated Mycotoxins.

    Science.gov (United States)

    Munkvold, Gary P

    2017-01-01

    The genus Fusarium includes numerous toxigenic species that are pathogenic to plants or humans, and are able to colonize a wide range of environments on earth. The genus comprises around 70 well-known species, identified by using a polyphasic approach, and as many as 300 putative species, according to phylogenetic species concepts; many putative species do not yet have formal names. Fusarium is one of the most economically important fungal genera because of yield loss due to plant pathogenic activity; mycotoxin contamination of food and feed products which often render them unaccep for marketing; and health impacts to humans and livestock, due to consumption of mycotoxins. Among the most important mycotoxins produced by species of Fusarium are the trichothecenes and the fumonisins. Fumonisins cause fatal livestock diseases and are considered potentially carcinogenic mycotoxins for humans, while trichothecenes are potent inhibitors of protein synthesis. This chapter summarizes the main aspects of morphology, pathology, and toxigenicity of the main Fusarium species that colonize different agricultural crops and environments worldwide, and cause mycotoxin contamination of food and feed.

  15. Species coexistence in a changing world.

    Science.gov (United States)

    Valladares, Fernando; Bastias, Cristina C; Godoy, Oscar; Granda, Elena; Escudero, Adrián

    2015-01-01

    The consequences of global change for the maintenance of species diversity will depend on the sum of each species responses to the environment and on the interactions among them. A wide ecological literature supports that these species-specific responses can arise from factors related to life strategies, evolutionary history and intraspecific variation, and also from environmental variation in space and time. In the light of recent advances from coexistence theory combined with mechanistic explanations of diversity maintenance, we discuss how global change drivers can influence species coexistence. We revise the importance of both competition and facilitation for understanding coexistence in different ecosystems, address the influence of phylogenetic relatedness, functional traits, phenotypic plasticity and intraspecific variability, and discuss lessons learnt from invasion ecology. While most previous studies have focused their efforts on disentangling the mechanisms that maintain the biological diversity in species-rich ecosystems such as tropical forests, grasslands and coral reefs, we argue that much can be learnt from pauci-specific communities where functional variability within each species, together with demographic and stochastic processes becomes key to understand species interactions and eventually community responses to global change.

  16. Phylogenetic and Phylogenomic Definition of Rhizopus Species

    Directory of Open Access Journals (Sweden)

    Andrii P. Gryganskyi

    2018-06-01

    Full Text Available Phylogenomic approaches have the potential to improve confidence about the inter-relationships of species in the order Mucorales within the fungal tree of life. Rhizopus species are especially important as plant and animal pathogens and bioindustrial fermenters for food and metabolite production. A dataset of 192 orthologous genes was used to construct a phylogenetic tree of 21 Rhizopus strains, classified into four species isolated from habitats of industrial, medical and environmental importance. The phylogeny indicates that the genus Rhizopus consists of three major clades, with R. microsporus as the basal species and the sister lineage to R. stolonifer and two closely related species R. arrhizus and R. delemar. A comparative analysis of the mating type locus across Rhizopus reveals that its structure is flexible even between different species in the same genus, but shows similarities between Rhizopus and other mucoralean fungi. The topology of single-gene phylogenies built for two genes involved in mating is similar to the phylogenomic tree. Comparison of the total length of the genome assemblies showed that genome size varies by as much as threefold within a species and is driven by changes in transposable element copy numbers and genome duplications.

  17. Recent advances in probabilistic species pool delineations

    Directory of Open Access Journals (Sweden)

    Dirk Nikolaus Karger

    2016-07-01

    Full Text Available A species pool is the set of species that could potentially colonize and establish within a community. It has been a commonly used concept in biogeography since the early days of MacArthur and Wilson’s work on Island Biogeography. Despite their simple and appealing definition, an operational application of species pools is bundled with a multitude of problems, which have often resulted in arbitrary decisions and workarounds when defining species pools. Two recently published papers address the operational problems of species pool delineations, and show ways of delineating them in a probabilistic fashion. In both papers, species pools were delineated using a process-based, mechanistical approach, which opens the door for a multitude of new applications in biogeography. Such applications include detecting the hidden signature of biotic interactions, disentangling the geographical structure of community assembly processes, and incorporating a temporal extent into species pools. Although similar in their conclusions, both ‘probabilistic approaches’ differ in their implementation and definitions. Here I give a brief overview of the differences and similarities of both approaches, and identify the challenges and advantages in their application.

  18. Pushing the pace of tree species migration.

    Directory of Open Access Journals (Sweden)

    Eli D Lazarus

    Full Text Available Plants and animals have responded to past climate changes by migrating with habitable environments, sometimes shifting the boundaries of their geographic ranges by tens of kilometers per year or more. Species migrating in response to present climate conditions, however, must contend with landscapes fragmented by anthropogenic disturbance. We consider this problem in the context of wind-dispersed tree species. Mechanisms of long-distance seed dispersal make these species capable of rapid migration rates. Models of species-front migration suggest that even tree species with the capacity for long-distance dispersal will be unable to keep pace with future spatial changes in temperature gradients, exclusive of habitat fragmentation effects. Here we present a numerical model that captures the salient dynamics of migration by long-distance dispersal for a generic tree species. We then use the model to explore the possible effects of assisted colonization within a fragmented landscape under a simulated tree-planting scheme. Our results suggest that an assisted-colonization program could accelerate species-front migration rates enough to match the speed of climate change, but such a program would involve an environmental-sustainability intervention at a massive scale.

  19. Cryptic species as a window into the paradigm shift of the species concept.

    Science.gov (United States)

    Fišer, Cene; Robinson, Christopher T; Malard, Florian

    2018-02-01

    The species concept is the cornerstone of biodiversity science, and any paradigm shift in the delimitation of species affects many research fields. Many biologists now are embracing a new "species" paradigm as separately evolving populations using different delimitation criteria. Individual criteria can emerge during different periods of speciation; some may never evolve. As such, a paradigm shift in the species concept relates to this inherent heterogeneity in the speciation process and species category-which is fundamentally overlooked in biodiversity research. Cryptic species fall within this paradigm shift: they are continuously being reported from diverse animal phyla but are poorly considered in current tests of ecological and evolutionary theory. The aim of this review is to integrate cryptic species in biodiversity science. In the first section, we address that the absence of morphological diversification is an evolutionary phenomenon, a "process" counterpart to the long-studied mechanisms of morphological diversification. In the next section regarding taxonomy, we show that molecular delimitation of cryptic species is heavily biased towards distance-based methods. We also stress the importance of formally naming of cryptic species for better integration into research fields that use species as units of analysis. Finally, we show that incorporating cryptic species leads to novel insights regarding biodiversity patterns and processes, including large-scale biodiversity assessments, geographic variation in species distribution and species coexistence. It is time for incorporating multicriteria species approaches aiming to understand speciation across space and taxa, thus allowing integration into biodiversity conservation while accommodating for species uncertainty. © 2018 John Wiley & Sons Ltd.

  20. Review: Allee effects in social species.

    Science.gov (United States)

    Angulo, Elena; Luque, Gloria M; Gregory, Stephen D; Wenzel, John W; Bessa-Gomes, Carmen; Berec, Ludek; Courchamp, Franck

    2018-01-01

    Allee effects have important implications for many aspects of basic and applied ecology. The benefits of aggregation of conspecific individuals are central to Allee effects, which have led to the widely held assumption that social species are more prone to Allee effects. Robust evidence for this assumption, however, remains rare. Furthermore, previous research on Allee effects has failed to adequately address the consequences of the different levels of organisation within social species' populations. Here, we review available evidence of Allee effects and model the role of demographic and behavioural factors that may combine to dampen or strengthen Allee effects in social species. We use examples across various species with contrasting social structure, including carnivores, bats, primates and eusocial insects. Building on this, we provide a conceptual framework that allows for the integration of different Allee effects in social species. Social species are characterised by nested levels of organisation. The benefits of cooperation, measured by mean individual fitness, can be observed at both the population and group levels, giving rise to "population level" and "group level" Allee effects respectively. We also speculate on the possibility of a third level, reporting per capita benefits for different individuals within a group (e.g. castes in social insects). We show that group size heterogeneity and intergroup interactions affect the strength of population-level demographic Allee effects. Populations with higher group size heterogeneity and in which individual social groups cooperate demonstrate the weakest Allee effects and may thus provide an explanation for why extinctions due to Allee effects are rare in social species. More adequately accounting for Allee effects in social species will improve our understanding of the ecological and evolutionary implications of cooperation in social species. © 2017 The Authors. Journal of Animal Ecology © 2017 British

  1. Economics of Harmful Invasive Species: A Review

    Directory of Open Access Journals (Sweden)

    George Marbuah

    2014-07-01

    Full Text Available The purpose of this study is to review theoretical and empirical findings in economics with respect to the challenging question of how to manage invasive species. The review revealed a relatively large body of literature on the assessment of damage costs of invasive species; single species and groups of species at different geographical scales. However, the estimated damage costs show large variation, from less than 1 million USD to costs corresponding to 12% of gross domestic product, depending on the methods employed, geographical scale, and scope with respect to inclusion of different species. Decisions regarding optimal management strategies, when to act in the invasion chain and which policy to choose, have received much less attention in earlier years, but have been subject to increasing research during the last decade. More difficult, but also more relevant policy issues have been raised, which concern the targeting in time and space of strategies under conditions of uncertainty. In particular, the weighting of costs and benefits from early detection and mitigation against the uncertain avoidance of damage with later control, when the precision in targeting species is typically greater is identified as a key challenge. The role of improved monitoring for detecting species and their spread and damage has been emphasized, but questions remain on how to achieve this in practice. This is in contrast to the relatively large body of literature on policies for mitigating dispersal by trade, which is regarded as one of the most important vectors for the spread of invasive species. On the other hand, the literature on how to mitigate established species, by control or adaptation, is much more scant. Studies evaluating causes for success or failure of policies against invasive in practice are in principal non-existing.

  2. An updated checklist of mosquito species (Diptera: Culicidae) from Madagascar

    Science.gov (United States)

    Tantely, Michaël Luciano; Le Goff, Gilbert; Boyer, Sébastien; Fontenille, Didier

    2016-01-01

    An updated checklist of 235 mosquito species from Madagascar is presented. The number of species has increased considerably compared to previous checklists, particularly the last published in 2003 (178 species). This annotated checklist provides concise information on endemism, taxonomic position, developmental stages, larval habitats, distribution, behavior, and vector-borne diseases potentially transmitted. The 235 species belong to 14 genera: Aedeomyia (3 species), Aedes (35 species), Anopheles (26 species), Coquillettidia (3 species), Culex (at least 50 species), Eretmapodites (4 species), Ficalbia (2 species), Hodgesia (at least one species), Lutzia (one species), Mansonia (2 species), Mimomyia (22 species), Orthopodomyia (8 species), Toxorhynchites (6 species), and Uranotaenia (73 species). Due to non-deciphered species complexes, several species remain undescribed. The main remarkable characteristic of Malagasy mosquito fauna is the high biodiversity with 138 endemic species (59%). Presence and abundance of species, and their association, in a given location could be a bio-indicator of environmental particularities such as urban, rural, forested, deforested, and mountainous habitats. Finally, taking into account that Malagasy culicidian fauna includes 64 species (27%) with a known medical or veterinary interest in the world, knowledge of their biology and host preference summarized in this paper improves understanding of their involvement in pathogen transmission in Madagascar. PMID:27101839

  3. An updated checklist of mosquito species (Diptera: Culicidae from Madagascar

    Directory of Open Access Journals (Sweden)

    Tantely Michaël Luciano

    2016-01-01

    Full Text Available An updated checklist of 235 mosquito species from Madagascar is presented. The number of species has increased considerably compared to previous checklists, particularly the last published in 2003 (178 species. This annotated checklist provides concise information on endemism, taxonomic position, developmental stages, larval habitats, distribution, behavior, and vector-borne diseases potentially transmitted. The 235 species belong to 14 genera: Aedeomyia (3 species, Aedes (35 species, Anopheles (26 species, Coquillettidia (3 species, Culex (at least 50 species, Eretmapodites (4 species, Ficalbia (2 species, Hodgesia (at least one species, Lutzia (one species, Mansonia (2 species, Mimomyia (22 species, Orthopodomyia (8 species, Toxorhynchites (6 species, and Uranotaenia (73 species. Due to non-deciphered species complexes, several species remain undescribed. The main remarkable characteristic of Malagasy mosquito fauna is the high biodiversity with 138 endemic species (59%. Presence and abundance of species, and their association, in a given location could be a bio-indicator of environmental particularities such as urban, rural, forested, deforested, and mountainous habitats. Finally, taking into account that Malagasy culicidian fauna includes 64 species (27% with a known medical or veterinary interest in the world, knowledge of their biology and host preference summarized in this paper improves understanding of their involvement in pathogen transmission in Madagascar.

  4. Cross-species amplification of 105 Lolium perenne SSR loci in 23 species within the Poaceae

    DEFF Research Database (Denmark)

    Jensen, Louise Bach; Holm, Preben Bach; Lübberstedt, Thomas

    2007-01-01

    Amplification of 105 Lolium perenne SSR markers was studied in 23 grass species representing seven tribes from three subfamilies of Poaceae. Twelve of the SSR markers are published for the first time. Between 2% and 96% of the SSR markers could be amplified within a given species. A subset of eight...... SSR markers was evaluated for polymorphism across nine of the 23 grass species. Four to seven of the markers were polymorphic within each species, with an average detection of 2.4 alleles per species....

  5. Dna c-values of 20 invasive alien species and 3 native species in south china

    Directory of Open Access Journals (Sweden)

    Gong Ni

    2014-01-01

    Full Text Available Cultivated fields and forests in South China are experiencing serious damage due to invasive alien plants. We investigated the relation between DNA C-values and invasiveness. The DNA C-values of 23 species ranged from 0.39 pg to 3.37 pg. Herbs, perennials and native species had higher mean DNA C-values than shrubs, annuals and invasive alien species. DNA C-values decreased with increasing invasiveness. Paederia scandens, a harmful native species, has the lowest DNA C-value among the perennials, indicating that native species with low nuclear content may also possess an invasive potential.

  6. Metabolite production by species of Stemphylium

    DEFF Research Database (Denmark)

    Olsen, Kresten Jon Kromphardt; Rossman, Amy; Andersen, Birgitte

    2018-01-01

    metabolites were found to be important for distinguishing species, while some unknown metabolites were also found to have important roles in distinguishing species of Stemphylium. This study is the first of its kind to investigate the chemical potential of Stemphylium across the whole genus.......Morphology and phylogeny has been used to distinguish members of the plant pathogenic fungal genus Stemphylium. A third method for distinguishing species is by chemotaxonomy. The main goal of the present study was to investigate the chemical potential of Stemphylium via HPLC-UV-MS analysis, while...

  7. Reservoirs of Non-baumannii Acinetobacter Species

    Science.gov (United States)

    Al Atrouni, Ahmad; Joly-Guillou, Marie-Laure; Hamze, Monzer; Kempf, Marie

    2016-01-01

    Acinetobacter spp. are ubiquitous gram negative and non-fermenting coccobacilli that have the ability to occupy several ecological niches including environment, animals and human. Among the different species, Acinetobacter baumannii has evolved as global pathogen causing wide range of infection. Since the implementation of molecular techniques, the habitat and the role of non-baumannii Acinetobacter in human infection have been elucidated. In addition, several new species have been described. In the present review, we summarize the recent data about the natural reservoir of non-baumannii Acinetobacter including the novel species that have been described for the first time from environmental sources and reported during the last years. PMID:26870013

  8. Tree Species Identity Shapes Earthworm Communities

    DEFF Research Database (Denmark)

    Schelfhout, Stephanie; Mertens, Jan; Verheyen, Kris

    2017-01-01

    Earthworms are key organisms in forest ecosystems because they incorporate organic material into the soil and affect the activity of other soil organisms. Here, we investigated how tree species affect earthworm communities via litter and soil characteristics. In a 36-year old common garden...... of soil and foliar litter, and determined the forest floor turnover rate and the density and biomass of the earthworm species occurring in the stands. Tree species significantly affected earthworm communities via leaf litter and/or soil characteristics. Anecic earthworms were abundant under Fraxinus, Acer...

  9. Fort Collins Science Center: Invasive Species Science

    Science.gov (United States)

    Stohlgren, Tom

    2004-01-01

    Invasive, non-native species of plants, animals, and disease organisms adversely affect the ecosystems they enter. Like "biological wildfires," they can quickly spread, and they affect nearly all terrestrial and aquatic ecosystems. Invasive species have become the greatest environmental challenge of the 21st century in terms of economic, environmental, and human health costs, with an estimated impact in the U.S. of over $138 billion per year. Managers of Department of the Interior and other public and private lands and waters rank invasive species as their top resource management problem.

  10. Fatty acid composition of forage herb species

    DEFF Research Database (Denmark)

    Warner, D.; Jensen, Søren Krogh; Cone, J.W.

    2010-01-01

    The use of alternative forage species in grasslands for intensive livestock production is receiving renewed attention. Data on fatty acid composition of herbs are scarce, so four herbs (Plantago lanceolata, Achillea millefolium, Cichorium intybus, Pastinaca sativa) and one grass species (timothy......, Phleum pratense) were sown in a cutting trial. The chemical composition and concentration of fatty acids (FA) of individual species were determined during the growing season. Concentrations of crude protein and FA were generally higher in the herbs than in timothy. C. intybus had the highest nutritive...

  11. Species Diversity Enhances Predator Growth Rates

    International Nuclear Information System (INIS)

    Olson, M.H.; Jacobs, R.P.; O'Donnell, E.B.

    2007-01-01

    Predators can be important top-down regulators of community structure and are known to have both positive and negative effects on species diversity. However, little is known about the reciprocal effects of species diversity on predators. Across a set of 80 lakes in Connecticut, USA, we found a strong positive correlation between prey species diversity (using the Shannon-Weiner Diversity Index) and growth rates of largemouth bass (Micropterus salmoides). This correlation was strongest for small predators and decreased with body size. Although the underlying mechanisms are not known, the correlation is not driven by total fish abundance, predator abundance, or productivity.

  12. Predictions For New, Exotic Actinide Species

    International Nuclear Information System (INIS)

    Pyykko, P.

    2002-01-01

    The approach. New, simple chemical species can be predicted by studying isoelectronic series using ab initio quantum chemistry. We currently use in most cases relativistic pseudopotentials and handle the electron correlation using density functional theory (DFT) or wave-function-based methods, from MP2 to CCSD(T). Typical codes are Gaussian 98, Turbomole or MolCas. For full four-component Dirac-Fock calculations, the DREAMS code of K. G. Dyall has been utilized. For mapping out the possible new species, complete maps of all possibilities are made, whenever possible, and the new species typically occur along the coast-line of the 'island of stability' of already known species

  13. antimicrobial susceptibility pattern of Salmonella species

    African Journals Online (AJOL)

    user

    GLOBAL JOURNAL OF COMMUNITY MEDICINE VOL. 2 NO. 1 & 2 2009: 5 - ... This study is a review of the contemporary antimicrobial susceptibility pattern of. Salmonella species. ... south-east Asia, parts of Latin America, the. Caribbean, and ...

  14. Metabolomic analysis of three Mollicute species.

    Directory of Open Access Journals (Sweden)

    Anna A Vanyushkina

    Full Text Available We present a systematic study of three bacterial species that belong to the class Mollicutes, the smallest and simplest bacteria, Spiroplasma melliferum, Mycoplasma gallisepticum, and Acholeplasma laidlawii. To understand the difference in the basic principles of metabolism regulation and adaptation to environmental conditions in the three species, we analyzed the metabolome of these bacteria. Metabolic pathways were reconstructed using the proteogenomic annotation data provided by our lab. The results of metabolome, proteome and genome profiling suggest a fundamental difference in the adaptation of the three closely related Mollicute species to stress conditions. As the transaldolase is not annotated in Mollicutes, we propose variants of the pentose phosphate pathway catalyzed by annotated enzymes for three species. For metabolite detection we employed high performance liquid chromatography coupled with mass spectrometry. We used liquid chromatography method - hydrophilic interaction chromatography with silica column - as it effectively separates highly polar cellular metabolites prior to their detection by mass spectrometer.

  15. Luminescence properties of uranyl-acetate species

    Energy Technology Data Exchange (ETDEWEB)

    Brinkmann, Hannes; Moll, Henry [Helmholtz-Zentrum Dresden-Rossendorf e.V., Dresden (Germany). Inst. of Resource Ecology; Stumpf, Thorsten [Helmholtz-Zentrum Dresden-Rossendorf e.V., Dresden (Germany). Biogeochemistry

    2017-06-01

    Time-resolved laser-induced fluorescence spectroscopy (TRLFS) was applied to characterize uranium(VI)- acetate species based on their luminescence properties. In contrast to previous interpretations, no indications were detected for the existence of the 1: 3 complex.

  16. Influence of estuaries on shelf foraminiferal species

    Digital Repository Service at National Institute of Oceanography (India)

    Nigam, R.

    Dabhol-bhatkal stretch of the west coast of India is marked by a number of estuaries. Cavarotalia annectens is selected to monitor the influence of these estuaries on the inner shelf foraminiferal fauna. The percentage distribution of this species...

  17. CONSERVATION METHODS OF ENDANGERED SPECIES GUNDU ...

    African Journals Online (AJOL)

    user

    Department of Forestry, Akperan Orshi College of Agriculture Yandev, Gboko ... conservation measure, an endangered species finally goes into extinction, that ... either for tourism, scientific studies/ .... economic, educational, scientific, cultural.

  18. New trends in species distribution modelling

    Science.gov (United States)

    Zimmermann, Niklaus E.; Edwards, Thomas C.; Graham, Catherine H.; Pearman, Peter B.; Svenning, Jens-Christian

    2010-01-01

    Species distribution modelling has its origin in the late 1970s when computing capacity was limited. Early work in the field concentrated mostly on the development of methods to model effectively the shape of a species' response to environmental gradients (Austin 1987, Austin et al. 1990). The methodology and its framework were summarized in reviews 10–15 yr ago (Franklin 1995, Guisan and Zimmermann 2000), and these syntheses are still widely used as reference landmarks in the current distribution modelling literature. However, enormous advancements have occurred over the last decade, with hundreds – if not thousands – of publications on species distribution model (SDM) methodologies and their application to a broad set of conservation, ecological and evolutionary questions. With this special issue, originating from the third of a set of specialized SDM workshops (2008 Riederalp) entitled 'The Utility of Species Distribution Models as Tools for Conservation Ecology', we reflect on current trends and the progress achieved over the last decade.

  19. Cooperation and the Endangered Species Act

    International Nuclear Information System (INIS)

    Palmer, S.C.

    1991-01-01

    Passage of the Endangered Species Act in 1973 set the stage for some of the nations most polemic environmental battles. One of these is in the Colorado River Basin which is home to four native and rare fish species. Acrimonious confrontation has characterized the consultations under the ESA regarding these fish species. In 1983, the U.S. Fish and Wildlife Service announced that no new water depletions such as for hydropower plants, from the Upper Colorado River Basin would be allowed. This created no small stir among basin states and water developers and a negotiated solution was sought. The result was the Recovery Implementation Program for Endangered Fish Species in the Upper Colorado River Basin. This paper reports that models of political negotiation indicate conceptually, that the Recovery Program with its decisions made by unanimity of consensus, its open process and sharing of information, its shared budget and users fees, is a vehicle of political compromise and cooperation

  20. Bioeconomic analysis supports the endangered species act.

    Science.gov (United States)

    Salau, Kehinde R; Fenichel, Eli P

    2015-10-01

    The United States Endangered Species Act (ESA) was enacted to protect and restore declining fish, wildlife, and plant populations. The ESA mandates endangered species protection irrespective of costs. This translates to the restriction of activities that harm endangered populations. We discuss criticisms of the ESA in the context of public land management and examine under what circumstance banning non-conservation activity on multiple use federal lands can be socially optimal. We develop a bioeconomic model to frame the species management problem under the ESA and identify scenarios where ESA-imposed regulations emerge as optimal strategies. Results suggest that banning harmful activities is a preferred strategy when valued endangered species are in decline or exposed to poor habitat quality. However, it is not optimal to sustain such a strategy in perpetuity. An optimal plan involves a switch to land-use practices characteristic of habitat conservation plans.

  1. The Drosophila bipectinata species complex: phylogenetic ...

    Indian Academy of Sciences (India)

    PARUL BANERJEE

    c Indian Academy of Sciences. RESEARCH ARTICLE. The Drosophila bipectinata species complex: phylogenetic relationship among different members based on chromosomal variations. PARUL BANERJEE and BASHISTH N. SINGH. ∗. Genetics Laboratory, Department of Zoology, Banaras Hindu University, Varanasi ...

  2. A cross-species alignment tool (CAT)

    DEFF Research Database (Denmark)

    Li, Heng; Guan, Liang; Liu, Tao

    2007-01-01

    BACKGROUND: The main two sorts of automatic gene annotation frameworks are ab initio and alignment-based, the latter splitting into two sub-groups. The first group is used for intra-species alignments, among which are successful ones with high specificity and speed. The other group contains more...... sensitive methods which are usually applied in aligning inter-species sequences. RESULTS: Here we present a new algorithm called CAT (for Cross-species Alignment Tool). It is designed to align mRNA sequences to mammalian-sized genomes. CAT is implemented using C scripts and is freely available on the web...... at http://xat.sourceforge.net/. CONCLUSIONS: Examined from different angles, CAT outperforms other extant alignment tools. Tested against all available mouse-human and zebrafish-human orthologs, we demonstrate that CAT combines the specificity and speed of the best intra-species algorithms, like BLAT...

  3. Marine linefish programme priority species list

    CSIR Research Space (South Africa)

    Wallace, JH

    1983-05-01

    Full Text Available in Durban in April 1982. For each species, information is presented on; distribution, angling status, preferred habitat, growth, reproduction, catch statistics and further research work required. The publication is intended to act as a working document...

  4. Germplasm characterization of three jabuticaba tree species

    Directory of Open Access Journals (Sweden)

    Moeses Andrigo Danner

    2011-09-01

    Full Text Available The purpose of this study was to characterize cultivated genotypes of three jabuticaba species (Plinia cauliflora, P. trunciflora, and P. jaboticaba. Phenology and fruit growth, as well as leaf, flower and fruit traits were evaluated. Variability in all traits was observed among genotypes of the three jabuticaba species. The trait peduncle size is indicated for differentiation of the three species under study. The leaf and fruit sizes of the genotypes P. trunciflora 3, P. trunciflora 4, P. trunciflora 5 and P. jaboticaba 1 differ from those described in the literature for these species, indicating the formation of ecotypes. Jabuticaba fruit skin contains high anthocyanin and flavonoid concentrations, with potential use in food and pharmaceutical industries.

  5. Density of Threatened and Endangered Species

    Data.gov (United States)

    California Natural Resource Agency — A compiled density of threatened and endangered species built around 2000m wide hexagonal cells. The dataset was created by generating a blank hex grid, intersecting...

  6. Invasive species unchecked by climate - response

    DEFF Research Database (Denmark)

    Burrows, Michael T.; Schoeman, David S.; Duarte, Carlos M.

    2012-01-01

    environments. This may be particularly true in the world's boreal oceans as melting sea ice facilitates new migratory passages between the Atlantic and Pacific Oceans. Moreover, as the ebb and flow of biodiversity intensifies under anthropogenic climate change, novel climates and communities of species......Hulme points out that observed rates of range expansion by invasive alien species are higher than the median speed of isotherm movement over the past 50 years, which in turn has outpaced the rates of climate-associated range changes of marine and terrestrial species. This is not surprising, given...... of climate-change-induced range shifts between native and alien species are meaningful only after the initial invasive spread has reached a stable range boundary. A focus on regions with high velocities of climate change, and on regions such as the tropics where novel thermal niches are being created, should...

  7. Osmoregulation in three species of Ambassidae (Osteichthyes ...

    African Journals Online (AJOL)

    1989-07-25

    Jul 25, 1989 ... the temperature tolerance ranges of the three species (Martin. 1988) suggest that ..... dependent on the period spent in freshwater (Holliday 1971;. Nordlie 1985). .... GILLES, R. 1975. Mechanisms of ion and osmoregulation.

  8. Community structure informs species geographic distributions

    KAUST Repository

    Montesinos-Navarro, Alicia; Estrada, Alba; Font, Xavier; Matias, Miguel G.; Meireles, Catarina; Mendoza, Manuel; Honrado, Joao P.; Prasad, Hari D.; Vicente, Joana R.; Early, Regan

    2018-01-01

    spatial resolution. However, survival of individuals is determined by processes that happen at small spatial scales. The relative abundance of coexisting species (i.e. 'community structure') reflects assembly processes occurring at small scales

  9. Sensory quality criteria for five fish species

    DEFF Research Database (Denmark)

    Warm, Karin; Nielsen, Jette; Hyldig, Grethe

    2000-01-01

    Sensory profiling has been used to develop one sensory vocabulary for five fish species: cod (Gadus morhua), saithe (Pollachius virens), rainbow trout (Salmo gardineri), herring (Clupea harengus) and flounder (Platichthys flessus). A nine- member trained panel assessed 18 samples with variation i...... variation and by presenting references, panel discussions and interpreting plots from multivariate data analysis. The developed profile can be used as a sensory wheel for these species, and with minor changes it may be adapted to similar species......Sensory profiling has been used to develop one sensory vocabulary for five fish species: cod (Gadus morhua), saithe (Pollachius virens), rainbow trout (Salmo gardineri), herring (Clupea harengus) and flounder (Platichthys flessus). A nine- member trained panel assessed 18 samples with variation...

  10. On two new species of Siriella (Mysidacea)

    Digital Repository Service at National Institute of Oceanography (India)

    Panampunnayil, S.U.

    Descriptions of two new mysids, Siriella africana ap. nov. collected from Agulhas Bank and S. intermedia sp. nov. collected from Laccadives are given. The present paper contains observations on two species of mysidacea collected from the Indian...

  11. Quantifying Temporal Genomic Erosion in Endangered Species.

    Science.gov (United States)

    Díez-Del-Molino, David; Sánchez-Barreiro, Fatima; Barnes, Ian; Gilbert, M Thomas P; Dalén, Love

    2018-03-01

    Many species have undergone dramatic population size declines over the past centuries. Although stochastic genetic processes during and after such declines are thought to elevate the risk of extinction, comparative analyses of genomic data from several endangered species suggest little concordance between genome-wide diversity and current population sizes. This is likely because species-specific life-history traits and ancient bottlenecks overshadow the genetic effect of recent demographic declines. Therefore, we advocate that temporal sampling of genomic data provides a more accurate approach to quantify genetic threats in endangered species. Specifically, genomic data from predecline museum specimens will provide valuable baseline data that enable accurate estimation of recent decreases in genome-wide diversity, increases in inbreeding levels, and accumulation of deleterious genetic variation. Copyright © 2017 Elsevier Ltd. All rights reserved.

  12. Endangered Species Litigation and Associated Pesticide Limitations

    Science.gov (United States)

    EPA has been subject to several citizen suits. As a result we have conducted scientific assessments and made effects determinations for various pesticide products as related to specific species of concern.

  13. ESUSA: US endangered species distribution file

    Energy Technology Data Exchange (ETDEWEB)

    Nagy, J.; Calef, C.E.

    1979-10-01

    This report describes a file containing distribution data on endangered species of the United States of Federal concern pursuant to the Endangered Species Act of 1973. Included for each species are (a) the common name, (b) the scientific name, (c) the family, (d) the group (mammal, bird, etc.), (e) Fish and Wildlife Service (FWS) listing and recovery priorities, (f) the Federal legal status, (g) the geographic distribution by counties or islands, (h) Federal Register citations and (i) the sources of the information on distribution of the species. Status types are endangered, threatened, proposed, formally under review, candidate, deleted, and rejected. Distribution is by Federal Information Processing Standard (FIPS) county code and is of four types: designated critical habitat, present range, potential range, and historic range.

  14. EXTRACTION AND ANTIOXIDANT ACTIVITIES OF TWO SPECIES ...

    African Journals Online (AJOL)

    2013-06-30

    Jun 30, 2013 ... Origanum vulgare were investigated and also the total phenolic and ... species majorana, and vulgare respectively; also the DPPH of essential oil of Origanum ... inflammatory, antimicrobial and antioxidant activities[10] .

  15. Clonal growth and plant species abundance.

    Science.gov (United States)

    Herben, Tomáš; Nováková, Zuzana; Klimešová, Jitka

    2014-08-01

    Both regional and local plant abundances are driven by species' dispersal capacities and their abilities to exploit new habitats and persist there. These processes are affected by clonal growth, which is difficult to evaluate and compare across large numbers of species. This study assessed the influence of clonal reproduction on local and regional abundances of a large set of species and compared the predictive power of morphologically defined traits of clonal growth with data on actual clonal growth from a botanical garden. The role of clonal growth was compared with the effects of seed reproduction, habitat requirements and growth, proxied both by LHS (leaf-height-seed) traits and by actual performance in the botanical garden. Morphological parameters of clonal growth, actual clonal reproduction in the garden and LHS traits (leaf-specific area - height - seed mass) were used as predictors of species abundance, both regional (number of species records in the Czech Republic) and local (mean species cover in vegetation records) for 836 perennial herbaceous species. Species differences in habitat requirements were accounted for by classifying the dataset by habitat type and also by using Ellenberg indicator values as covariates. After habitat differences were accounted for, clonal growth parameters explained an important part of variation in species abundance, both at regional and at local levels. At both levels, both greater vegetative growth in cultivation and greater lateral expansion trait values were correlated with higher abundance. Seed reproduction had weaker effects, being positive at the regional level and negative at the local level. Morphologically defined traits are predictive of species abundance, and it is concluded that simultaneous investigation of several such traits can help develop hypotheses on specific processes (e.g. avoidance of self-competition, support of offspring) potentially underlying clonal growth effects on abundance. Garden

  16. The Endangered Species Act and Sound Science

    Science.gov (United States)

    2006-10-05

    population segment” under ESA? ! If a species is wide-ranging and begins, on its own, to reappear in an area it once occupied (as with a few wolves in... Yellowstone ), should these animals be regarded as a “resident population” for purposes of ESA? ! Should a formerly widely-distributed species (such as bald... wolves ), and is delisted as soon as possible (as with bald eagles and Florida panthers). Representatives of many scientific or environmental

  17. Invasive Species - A Threat to the Homeland?

    Science.gov (United States)

    2003-04-07

    species of weeds, diseases and organisms on both my farm and the surrounding woodlands. Some of these species include soybean cyst nematode, soybean aphid ...natural enemies in their new environment. Parasites, pathogens , or predators that would inhibit or limit their spread are few or non-existent. In...tested, and fielded to control the genetically modified organism. Serums would be less effective, and diagnosis of human pathogens could change and

  18. Isoprene emission from tropical tree species

    International Nuclear Information System (INIS)

    Padhy, P.K.; Varshney, C.K.

    2005-01-01

    Foliar emission of isoprene was measured in nine commonly growing tree species of Delhi, India. Dynamic flow enclosure technique was used and gas samples were collected onto Tenax-GC/Carboseive cartridges, which were then attached to the sample injection system in the gas chromatograph (GC). Eluting compounds were analysed using a flame ionisation detector (FID). Out of the nine tree species, isoprene emission was found in six species (Eucalyptus sp., Ficus benghalensis, Ficus religiosa, Mangifera indica, Melia azedarach, and Syzygium jambolanum), whereas, in the remaining three tree species (Alstonia scholaris, Azadirachta indica, and Cassia fistula) no isoprene emission was detected or the levels of emission were negligible or below the detection limit (BDL). Among six tree species, the highest hourly emission (10.2±6.8 μg g -1 leaf dry weight, average of five seasons) was observed in Ficus religiosa, while minimum emission was from Melia azedarach (2.2±4.9 μg g -1 leaf dry weight, average of five seasons). Isoprene emission (average of six species), over five seasons, was found to vary between 3.9 and 8.5 μg g -1 leaf dry weight during the rainy season. In addition, significant diurnal variation in isoprene emission was observed in each species. The preliminary estimate made in this study on the annual biogenic VOC emission from India may probably be the first of its kind from this part of the world. - Isoprene flux (diurnal and seasonal) from some tropical tree species was estimated and a regional comparison was made

  19. Isoprene emission from tropical tree species

    Energy Technology Data Exchange (ETDEWEB)

    Padhy, P.K. [School of Environmental Sciences, Jawaharlal Nehru University, New Delhi 110 067 (India)]. E-mail: padhypk2003@yahoo.com; Varshney, C.K. [School of Environmental Sciences, Jawaharlal Nehru University, New Delhi 110 067 (India)

    2005-05-01

    Foliar emission of isoprene was measured in nine commonly growing tree species of Delhi, India. Dynamic flow enclosure technique was used and gas samples were collected onto Tenax-GC/Carboseive cartridges, which were then attached to the sample injection system in the gas chromatograph (GC). Eluting compounds were analysed using a flame ionisation detector (FID). Out of the nine tree species, isoprene emission was found in six species (Eucalyptus sp., Ficus benghalensis, Ficus religiosa, Mangifera indica, Melia azedarach, and Syzygium jambolanum), whereas, in the remaining three tree species (Alstonia scholaris, Azadirachta indica, and Cassia fistula) no isoprene emission was detected or the levels of emission were negligible or below the detection limit (BDL). Among six tree species, the highest hourly emission (10.2{+-}6.8 {mu}g g{sup -1} leaf dry weight, average of five seasons) was observed in Ficus religiosa, while minimum emission was from Melia azedarach (2.2{+-}4.9 {mu}g g{sup -1} leaf dry weight, average of five seasons). Isoprene emission (average of six species), over five seasons, was found to vary between 3.9 and 8.5 {mu}g g{sup -1} leaf dry weight during the rainy season. In addition, significant diurnal variation in isoprene emission was observed in each species. The preliminary estimate made in this study on the annual biogenic VOC emission from India may probably be the first of its kind from this part of the world. - Isoprene flux (diurnal and seasonal) from some tropical tree species was estimated and a regional comparison was made.

  20. The ethics of reviving long extinct species.

    Science.gov (United States)

    Sandler, Ronald

    2014-04-01

    There now appears to be a plausible pathway for reviving species that have been extinct for several decades, centuries, or even millennia. I conducted an ethical analysis of de-extinction of long extinct species. I assessed several possible ethical considerations in favor of pursuing de-extinction: that it is a matter of justice; that it would reestablish lost value; that it would create new value; and that society needs it as a conservation last resort. I also assessed several possible ethical arguments against pursuing de-extinction: that it is unnatural; that it could cause animal suffering; that it could be ecologically problematic or detrimental to human health; and that it is hubristic. There are reasons in favor of reviving long extinct species, and it can be ethically acceptable to do so. However, the reasons in favor of pursuing de-extinction do not have to do with its usefulness in species conservation; rather, they concern the status of revived species as scientific and technological achievements, and it would be ethically problematic to promote de-extinction as a significant conservation strategy, because it does not prevent species extinctions, does not address the causes of extinction, and could be detrimental to some species conservation efforts. Moreover, humanity does not have a responsibility or obligation to pursue de-extinction of long extinct species, and reviving them does not address any urgent problem. Therefore, legitimate ecological, political, animal welfare, legal, or human health concerns associated with a de-extinction (and reintroduction) must be thoroughly addressed for it to be ethically acceptable. © 2013 Society for Conservation Biology.

  1. Relation of chironomids with Aeromonas species

    Directory of Open Access Journals (Sweden)

    Sivan eLaviad

    2016-05-01

    Full Text Available Chironomids (Diptera: Chironomidae, also known as non-biting midges, are one of the most abundant groups of insects in aquatic habitats. They undergo a complete metamorphosis of four life stages of which three are aquatic (egg, larva, pupa, and the adult emerges into the air. Chironomids serve as a natural reservoir of Aeromonas and Vibrio cholerae species. Here we review existing knowledge about the mutual relations between Aeromonas species and chironomids. Using 454-pyrosequencing of the 16S rRNA gene, we found that the prevalence of Aeromonas species in the insects’ egg masses and larvae was 1.6% and 3.3% of the insects’ endogenous microbiota, respectively. Aeromonas abundance per egg mass remained stable during a six-month period of bacterial monitoring. Different Aeromonas species were isolated and some demonstrated the ability to degrade the insect’s egg masses and to prevent eggs hatching. Chitinase was identified as the enzyme responsible for the egg mass degradation. Different Aeromonas species isolated from chironomids demonstrated the potential to protect their host from toxic metals. Aeromonas is a causative agent of fish infections. Fish are frequently recorded as feeding on chironomids. Thus, fish might be infected with Aeromonas species via chironomid consumption. Aeromonas strains are also responsible for causing gastroenteritis and wound infections in humans. Different virulence genes were identified in Aeromonas species isolated from chironomids. Chironomids may infest drinking water reservoirs, hence be the source of pathogenic Aeromonas strains in drinking water. Chironomids and Aeromonas species have a complicated mutual relationship.

  2. Phylogeny and species traits predict bird detectability

    Science.gov (United States)

    Solymos, Peter; Matsuoka, Steven M.; Stralberg, Diana; Barker, Nicole K. S.; Bayne, Erin M.

    2018-01-01

    Avian acoustic communication has resulted from evolutionary pressures and ecological constraints. We therefore expect that auditory detectability in birds might be predictable by species traits and phylogenetic relatedness. We evaluated the relationship between phylogeny, species traits, and field‐based estimates of the two processes that determine species detectability (singing rate and detection distance) for 141 bird species breeding in boreal North America. We used phylogenetic mixed models and cross‐validation to compare the relative merits of using trait data only, phylogeny only, or the combination of both to predict detectability. We found a strong phylogenetic signal in both singing rates and detection distances; however the strength of phylogenetic effects was less than expected under Brownian motion evolution. The evolution of behavioural traits that determine singing rates was found to be more labile, leaving more room for species to evolve independently, whereas detection distance was mostly determined by anatomy (i.e. body size) and thus the laws of physics. Our findings can help in disentangling how complex ecological and evolutionary mechanisms have shaped different aspects of detectability in boreal birds. Such information can greatly inform single‐ and multi‐species models but more work is required to better understand how to best correct possible biases in phylogenetic diversity and other community metrics.

  3. The temporal variability of species densities

    International Nuclear Information System (INIS)

    Redfearn, A.; Pimm, S.L.

    1993-01-01

    Ecologists use the term 'stability' to mean to number of different things (Pimm 1984a). One use is to equate stability with low variability in population density over time (henceforth, temporal variability). Temporal variability varies greatly from species to species, so what effects it? There are at least three sets of factors: the variability of extrinsic abiotic factors, food web structure, and the intrinsic features of the species themselves. We can measure temporal variability using at least three statistics: the coefficient of variation of density (CV); the standard deviation of the logarithms of density (SDL); and the variance in the differences between logarithms of density for pairs of consecutive years (called annual variability, hence AV, b y Wolda 1978). There are advantages and disadvantages to each measure (Williamson 1984), though in our experience, the measures are strongly correlated across sets of taxonomically related species. The increasing availability of long-term data sets allows one to calculate these statistics for many species and so to begin to understand the various causes of species differences in temporal variability

  4. Malaria vector species in Colombia: a review

    Directory of Open Access Journals (Sweden)

    James Montoya-Lerma

    2011-08-01

    Full Text Available Here we present a comprehensive review of the literature on the vectorial importance of the major Anopheles malaria vectors in Colombia. We provide basic information on the geographical distribution, altitudinal range, immature habitats, adult behaviour, feeding preferences and anthropophily, endophily and infectivity rates. We additionally review information on the life cycle, longevity and population fluctuation of Colombian Anopheles species. Emphasis was placed on the primary vectors that have been epidemiologically incriminated in malaria transmission: Anopheles darlingi, Anopheles albimanus and Anopheles nuneztovari. The role of a selection of local, regional or secondary vectors (e.g., Anopheles pseudopunctipennis and Anopheles neivai is also discussed. We highlight the importance of combining biological, morphological and molecular data for the correct taxonomical determination of a given species, particularly for members of the species complexes. We likewise emphasise the importance of studying the bionomics of primary and secondary vectors along with an examination of the local conditions affecting the transmission of malaria. The presence and spread of the major vectors and the emergence of secondary species capable of transmitting human Plasmodia are of great interest. When selecting control measures, the anopheline diversity in the region must be considered. Variation in macroclimate conditions over a species' geographical range must be well understood and targeted to plan effective control measures based on the population dynamics of the local Anopheles species.

  5. Inducible Clindamycin Resistance in Staphylococcus Species

    International Nuclear Information System (INIS)

    Afridi, F. I.; Zeb, M.; Farooqi, B. J.; Murtaza, G.; Hussain, A.

    2014-01-01

    Objective: To determine the frequency of inducible clindamycin resistance in clinical isolates of Staphylococcus species by phenotypic D-test. Study Design: Observational study. Place and Duration of Study: Ziauddin University Hospital, Karachi, from July to December 2011. Methodology: Consecutive clinical isolates of Staphylococcus species were collected and identified by conventional microbiological techniques. Antimicrobial susceptibility testing and inducible clindamycin resistance was carried out by performing D-test using CLSI criteria. Methicillin resistance was detected by using Cefoxitin disk as a surrogate marker. Statistical analysis was performed by SPSS version-17. Results: A total of 667 clinical isolates of Staphylococcus species were obtained during the study period. In these isolates, 177 (26.5%) were Staphylococcus aureus, and 490 (73.5%) were coagulase negative Staphylococci. The total frequency of inducible clindamycin resistance among isolates of Staphylococcus species was 120/667 (18%). Frequency of inducible clindamycin resistance among coagulase negative Staphylococci group and Staphylococcus aureus group were 18.57% and 16.38% respectively. Median age of patients in D-test positive group was 19.5 (1 - 54) years. Conclusion: The frequency of inducible clindamycin resistance among Staphylococcus species may differ in different hospital setup. Clinical microbiology laboratories should implement testing simple and effective D-test on all Staphylococcus species. D-test positive isolates should be reported clindamycin resistant to decrease treatment failure. (author)

  6. Chilli anthracnose disease caused by Colletotrichum species.

    Science.gov (United States)

    Than, Po Po; Prihastuti, Haryudian; Phoulivong, Sitthisack; Taylor, Paul W J; Hyde, Kevin D

    2008-10-01

    Anthracnose disease is one of the major economic constraints to chilli production worldwide, especially in tropical and subtropical regions. Accurate taxonomic information is necessary for effective disease control management. In the Colletotrichum patho-system, different Colletotrichum species can be associated with anthracnose of the same host. Little information is known concerning the interactions of the species associated with the chilli anthracnose although several Colletotrichum species have been reported as causal agents of chilli anthracnose disease worldwide. The ambiguous taxonomic status of Colletotrichum species has resulted in inaccurate identification which may cause practical problems in plant breeding and disease management. Although the management and control of anthracnose disease are still being extensively researched, commercial cultivars of Capsicum annuum that are resistant to the pathogens that cause chilli anthracnose have not yet been developed. This paper reviews the causal agents of chilli anthracnose, the disease cycle, conventional methods in identification of the pathogen and molecular approaches that have been used for the identification of Colletotrichum species. Pathogenetic variation and population structure of the causal agents of chilli anthracnose along with the current taxonomic status of Colletotrichum species are discussed. Future developments leading to the disease management strategies are suggested.

  7. Phytochemistry and Pharmacology of Berberis Species

    Science.gov (United States)

    Mokhber-Dezfuli, Najmeh; Saeidnia, Soodabeh; Gohari, Ahmad Reza; Kurepaz-Mahmoodabadi, Mahdieh

    2014-01-01

    The genus Berberis (Berberidaceae) includes about 500 species worldwide, some of which are widely cultivated in the north-eastern regions of Iran. This genus consists of spiny deciduous evergreen shrubs, characterized by yellow wood and flowers. The cultivation of seedless barberry in South Khorasan goes back to two hundred years ago. Medicinal properties for all parts of these plants have been reported, including: Antimicrobial, antiemetic, antipyretic, antioxidant, anti-inflammatory, anti-arrhythmic, sedative, anti-cholinergic, cholagogic, anti-leishmaniasis, and anti-malaria. The main compounds found in various species of Berberis, are berberine and berbamine. Phytochemical analysis of various species of this genus revealed the presence of alkaloids, tannins, phenolic compounds, sterols and triterpenes. Although there are some review articles on Berberis vulgaris (as the most applied species), there is no review on the phytochemical and pharmacological activities of other well-known species of the genus Berberis. For this reason, the present review mainly focused on the diverse secondary metabolites of various species of this genus and the considerable pharmacological and biological activities together with a concise story of the botany and cultivation. PMID:24600191

  8. Rare species are valued big time.

    Directory of Open Access Journals (Sweden)

    Elena Angulo

    Full Text Available BACKGROUND: It has recently been postulated that the value humans place on rarity could cause the extinction of rare species. This is because people are willing to pay the high costs of exploiting the last individuals. Many hobbies, such as ecotourism or the keeping of exotic pets may cause this effect--known as the anthropogenic Allee effect. However, the entire theory relies on the insofar undemonstrated assumption that people do value rarity. METHODOLOGY/PRINCIPAL FINDINGS: In order to quantify how much people valued rare species relative to common ones, we created online slideshows of photographs of either rare or common species on an Internet web site. The slideshow with photographs of rare species attracted more visitors, and visitors spent, in general, more time waiting to view it. CONCLUSIONS/SIGNIFICANCE: We provide evidence that people value rare more than common species. As we did not target consumers of a specific market, this finding suggests that the anthropogenic Allee effect is likely be driven by a large part of the population. Given the substantial participation in our online experiment, we highlight the potential of the world wide web resource as a tool for conservation action. However, the evidence presented here that the general public value rare species, combined with the assumption that anthropogenic Allee effect is operating, implies that conservationists should be prudent when using rarity to promote conservation.

  9. Assessing species saturation: conceptual and methodological challenges.

    Science.gov (United States)

    Olivares, Ingrid; Karger, Dirk N; Kessler, Michael

    2018-05-07

    Is there a maximum number of species that can coexist? Intuitively, we assume an upper limit to the number of species in a given assemblage, or that a lineage can produce, but defining and testing this limit has proven problematic. Herein, we first outline seven general challenges of studies on species saturation, most of which are independent of the actual method used to assess saturation. Among these are the challenge of defining saturation conceptually and operationally, the importance of setting an appropriate referential system, and the need to discriminate among patterns, processes and mechanisms. Second, we list and discuss the methodological approaches that have been used to study species saturation. These approaches vary in time and spatial scales, and in the variables and assumptions needed to assess saturation. We argue that assessing species saturation is possible, but that many studies conducted to date have conceptual and methodological flaws that prevent us from currently attaining a good idea of the occurrence of species saturation. © 2018 Cambridge Philosophical Society.

  10. Reptilian reovirus: a new fusogenic orthoreovirus species

    International Nuclear Information System (INIS)

    Duncan, Roy.; Corcoran, Jennifer; Shou Jingyun; Stoltz, Don

    2004-01-01

    The fusogenic subgroup of orthoreoviruses contains most of the few known examples of non-enveloped viruses capable of inducing syncytium formation. The only unclassified orthoreoviruses at the species level represent several fusogenic reptilian isolates. To clarify the relationship of reptilian reoviruses (RRV) to the existing fusogenic and nonfusogenic orthoreovirus species, we undertook a characterization of a python reovirus isolate. Biochemical, biophysical, and biological analyses confirmed the designation of this reptilian reovirus (RRV) isolate as an unclassified fusogenic orthoreovirus. Sequence analysis revealed that the RRV S1 and S3 genome segments contain a novel conserved 5'-terminal sequence not found in other orthoreovirus species. In addition, the gene arrangement and the coding potential of the bicistronic RRV S1 genome segment differ from that of established orthoreovirus species, encoding a predicted homologue of the reovirus cell attachment protein and a unique 125 residue p14 protein. The RRV S3 genome segment encodes a homologue of the reovirus sigma-class major outer capsid protein, although it is highly diverged from that of other orthoreovirus species (amino acid identities of only 16-25%). Based on sequence analysis, biological properties, and phylogenetic analysis, we propose this python reovirus be designated as the prototype strain of a fifth species of orthoreoviruses, the reptilian reoviruses

  11. Diversity of cuticular wax among Salix species and Populus species hybrids.

    Science.gov (United States)

    Cameron, Kimberly D; Teece, Mark A; Bevilacqua, Eddie; Smart, Lawrence B

    2002-08-01

    The leaf cuticular waxes of three Salix species and two Populus species hybrids, selected for their ability to produce high amounts of biomass, were characterized. Samples were extracted in CH(2)Cl(2) three times over the growing season. Low kV SEM was utilized to observe differences in the ultrastructure of leaf surfaces from each clone. Homologous series of wax components were classified into organic groups, and the variation in wax components due to clone, sample time, and their interaction was identified. All Salix species and Populus species hybrids showed differences in total wax load at each sampling period, whereas the pattern of wax deposition over time differed only between the Salix species. A strong positive relationship was identified between the entire homologous series of alcohols and total wax load in all clones. Similarly strong relationships were observed between fatty acids and total wax load as well as fatty acids and alcohols in two Salix species and one Populus species hybrid. One Salix species, S. dasyclados, also displayed a strong positive relationship between alcohols and alkanes. These data indicate that species grown under the same environmental conditions produce measurably different cuticular waxes and that regulation of wax production appears to be different in each species. The important roles cuticular waxes play in drought tolerance, pest, and pathogen resistance, as well as the ease of wax extraction and analysis, strongly suggest that the characteristics of the cuticular wax may prove to be useful selectable traits in a breeding program.

  12. Reconciliation with non-binary species trees.

    Science.gov (United States)

    Vernot, Benjamin; Stolzer, Maureen; Goldman, Aiton; Durand, Dannie

    2008-10-01

    Reconciliation extracts information from the topological incongruence between gene and species trees to infer duplications and losses in the history of a gene family. The inferred duplication-loss histories provide valuable information for a broad range of biological applications, including ortholog identification, estimating gene duplication times, and rooting and correcting gene trees. While reconciliation for binary trees is a tractable and well studied problem, there are no algorithms for reconciliation with non-binary species trees. Yet a striking proportion of species trees are non-binary. For example, 64% of branch points in the NCBI taxonomy have three or more children. When applied to non-binary species trees, current algorithms overestimate the number of duplications because they cannot distinguish between duplication and incomplete lineage sorting. We present the first algorithms for reconciling binary gene trees with non-binary species trees under a duplication-loss parsimony model. Our algorithms utilize an efficient mapping from gene to species trees to infer the minimum number of duplications in O(|V(G) | x (k(S) + h(S))) time, where |V(G)| is the number of nodes in the gene tree, h(S) is the height of the species tree and k(S) is the size of its largest polytomy. We present a dynamic programming algorithm which also minimizes the total number of losses. Although this algorithm is exponential in the size of the largest polytomy, it performs well in practice for polytomies with outdegree of 12 or less. We also present a heuristic which estimates the minimal number of losses in polynomial time. In empirical tests, this algorithm finds an optimal loss history 99% of the time. Our algorithms have been implemented in NOTUNG, a robust, production quality, tree-fitting program, which provides a graphical user interface for exploratory analysis and also supports automated, high-throughput analysis of large data sets.

  13. The status of Botryosphaeriaceae species infecting grapevines

    Directory of Open Access Journals (Sweden)

    Jose Ramón URBEZ-TORRES

    2011-12-01

    Full Text Available Normal 0 MicrosoftInternetExplorer4 Normal 0 MicrosoftInternetExplorer4 Species in the Botryosphaeriaceae have a cosmopolitan distribution, and occur on a wide range of annual and perennial hosts including grapevines. To date, morphological and taxonomic studies, as well as analyses of nucleotide sequences of multiple genes, have allowed the identification of at least 21 different species in the Botryosphaeriaceae occurring in grapevines worldwide. Grapevine disease symptoms caused by members of this family include leaf spots, fruit rots, shoot dieback, bud necrosis, vascular discoloration of the wood, and perennial cankers, and their current status as pathogens is reviewed. Additionally, the disease name Botryosphaeria dieback is proposed here to describe the different grapevine trunk disease symptoms caused by species of Botryosphaeriaceae. Much has been written during the last decade about the association between species in the Botryosphaeriaceae and grapevine trunk diseases, which has contributed to a better understanding of the role that these fungal taxa play in grapevine diseases. Although virulence has been shown to vary between species and isolates of the same species in different countries, these fungi have become well-recognized as important grapevine pathogens worldwide. Latest and novel findings from studies conducted in different countries, on disease etiology and species distribution, epidemiology and biology are discussed. Much progress has been achieved in the development and implementation of novel diagnostic and detection techniques.Vineyard sanitation techniques, as well as chemical, biological, and cultural control strategies available at the present time to reduce the infection caused by botryosphaeriaceous fungi, are presented in this review. 

  14. New species of Auritella (Inocybaceae) from Cameroon, with a worldwide key to the known species.

    Science.gov (United States)

    Matheny, P Brandon; Henkel, Terry W; Séné, Olivier; Korotkin, Hailee B; Dentinger, Bryn T M; Aime, M Catherine

    2017-12-01

    Two new species in the genus Auritella ( Inocybaceae ) are described as new from tropical rainforest in Cameroon. Descriptions, photographs, line drawings, and a worldwide taxonomic key to the described species of Auritella are presented. Phylogenetic analysis of 28S rDNA and rpb2 nucleotide sequence data suggests at least five phylogenetic species that can be ascribed to Auritella occur in the region comprising Cameroon and Gabon and constitute a strongly supported monophyletic subgroup within the genus. Phylogenetic analysis of ITS data supports the conspecificity of numerous collections attributed to the two new species as well as the monophyly of Australian species of Auritella . This work raises the known number of described species of Auritella to thirteen worldwide, four of which occur in tropical Africa, one in tropical India, and eight in temperate and tropical regions of Australia. This is the first study to confirm an ectomycorrhizal status of Auritella using molecular data.

  15. Molluscan indicator species and their potential use in ecological status assessment using species distribution modeling.

    Science.gov (United States)

    Moraitis, Manos L; Tsikopoulou, Irini; Geropoulos, Antonios; Dimitriou, Panagiotis D; Papageorgiou, Nafsika; Giannoulaki, Marianna; Valavanis, Vasilis D; Karakassis, Ioannis

    2018-05-24

    Marine habitat assessment using indicator species through Species Distribution Modeling (SDM) was investigated. The bivalves: Corbula gibba and Flexopecten hyalinus were the indicator species characterizing disturbed and undisturbed areas respectively in terms of chlorophyll a concentration in Greece. The habitat suitability maps of these species reflected the overall ecological status of the area. The C. gibba model successfully predicted the occurrence of this species in areas with increased physical disturbance driven by chlorophyll a concentration, whereas the habitat map for F. hyalinus showed an increased probability of occurrence in chlorophyll-poor areas, affected mainly by salinity. We advocate the use of C. gibba as a proxy for eutrophication and the incorporation of this species in monitoring studies through SDM methods. For the Mediterranean Sea we suggest the use of F. hyalinus in SDM as an indicator of environmental stability and a possible forecasting tool for salinity fluctuations. Copyright © 2018 Elsevier Ltd. All rights reserved.

  16. Reproductive Impacts of Endocrine-Disrupting Chemicals on Wildlife Species: Implications for Conservation of Endangered Species.

    Science.gov (United States)

    Tubbs, Christopher W; McDonough, Caitlin E

    2018-02-15

    Wildlife have proven valuable to our understanding of the potential effects of endocrine-disrupting chemicals (EDCs) on human health by contributing considerably to our understanding of the mechanisms and consequences of EDC exposure. But the threats EDCs present to populations of wildlife species themselves are significant, particularly for endangered species whose existence is vulnerable to any reproductive perturbation. However, few studies address the threats EDCs pose to endangered species owing to challenges associated with their study. Here, we highlight those barriers and review the available literature concerning EDC effects on endangered species. Drawing from other investigations into nonthreatened wildlife species, we highlight opportunities for new approaches to advance our understanding and potentially mitigate the effects of EDCs on endangered species to enhance their fertility.

  17. Biological review of 82 species of coral petitioned to be included in the Endangered Species Act

    Science.gov (United States)

    Brainard, Russell E.; Birkeland, Charles; Eakin, C. Mark; McElhany, Paul; Miller, Margaret W.; Patterson, Matt; Piniak, G.A.

    2011-01-01

    list 83 coral species as threatened or endangered under the U.S. Endangered Species Act. The petition was based on a predicted decline in available habitat for the species, citing anthropogenic climate change and ocean acidification as the lead factors among the various stressors responsible for the potential decline. The NMFS identified 82 of the corals as candidate species, finding that the petition provided substantive information for a potential listing of these species. The NMFS established a Biological Review Team (BRT) to prepare this Status Review Report that examines the status of these 82 candidate coral species and evaluates extinction risk for each of them. This document makes no recommendations for listing, as that is a separate evaluation to be conducted by the NMFS.

  18. Proactive Conservation Program: Species of Concern :: NOAA Fisheries

    Science.gov (United States)

    Invertebrates & Plants Species of Concern Threatened & Endangered Health & Stranding Marine Mammals : Species of Concern Species of Concern List | Grants and Technical Resources/Links bluefin tuna Bluefin Tuna (Thunnus thynnus) Photo: NOAA Species of Concern are those species about which we have some

  19. Effects of habitat structure and altitudinal gradients on avian species ...

    African Journals Online (AJOL)

    ... effect on bird species diversity. Bird species diversity increased with increase in tree height. A significant decline in bird species diversity with increased number of trees and canopy cover was noted. This result probably suggests an accumulation of forest edge species and generalist species in the less forested habitat.

  20. Delineating probabilistic species pools in ecology and biogeography

    OpenAIRE

    Karger, Dirk Nikolaus; Cord, Anna F; Kessler, Michael; Kreft, Holger; Kühn, Ingolf; Pompe, Sven; Sandel, Brody; Sarmento Cabral, Juliano; Smith, Adam B; Svenning, Jens-Christian; Tuomisto, Hanna; Weigelt, Patrick; Wesche, Karsten

    2016-01-01

    Aim To provide a mechanistic and probabilistic framework for defining the species pool based on species-specific probabilities of dispersal, environmental suitability and biotic interactions within a specific temporal extent, and to show how probabilistic species pools can help disentangle the geographical structure of different community assembly processes. Innovation Probabilistic species pools provide an improved species pool definition based on probabilities in conjuncti...

  1. Two new species of the Phanaeus endymion species group (Coleoptera, Scarabaeidae, Scarabaeinae).

    Science.gov (United States)

    Moctezuma, Victor; Sánchez-Huerta, José Luis; Halffter, Gonzalo

    2017-01-01

    Phanaeus bravoensis sp. n. is described from the coniferous-oak forests in the state of Guerrero, and P. huichol sp. n. from coniferous-oak forests and cloud forests in Jalisco and Nayarit. The new species are closely related to P. halffterorum and P. zoque respectively. Morphological trait combination, geographic distribution, and trophic habits show important differences among the studied species. A distribution map and an updated key to separate the species are included.

  2. Discordance between morphological and molecular species boundaries among Caribbean species of the reef sponge Callyspongia

    OpenAIRE

    DeBiasse, Melissa B; Hellberg, Michael E

    2015-01-01

    Sponges are among the most species-rich and ecologically important taxa on coral reefs, yet documenting their diversity is difficult due to the simplicity and plasticity of their morphological characters. Genetic attempts to identify species are hampered by the slow rate of mitochondrial sequence evolution characteristic of sponges and some other basal metazoans. Here we determine species boundaries of the Caribbean coral reef sponge genus Callyspongia using a multilocus, model-based approach...

  3. Indicator species of essential forest tree species in the Burdur district.

    Science.gov (United States)

    Negiz, Mehmet Güvenç; Eser, Yunus; Kuzugüdenll, Emre; Izkan, Kürşad

    2015-01-01

    The forests of Burdur district for long have been subjected to over grazing and individual selection. As a result of this, majority of the forest areas in the district were degraded. In the district, afforestation efforts included majority of forestry implementations. It is well known that selecting suitable species plays an important role for achieving afforestation efforts. In this context, knowing the indicator species among the target species would be used in afforestation efforts, studies on the interrelationships between environmental factors and target species distribution is vital for selecting suitable species for a given area. In this study, Anatolian Black pine (Pinus nigra), Red pine (Pinus brutia), Crimean juniper (Juniperus excelsa) and Taurus cedar (Cedrus libani), essential tree species, were considered as target species. The data taken from 100 sample plots in Burdur district was used. Interspecific correlation analysis was performed to determine the positive and negative indicator species among each of the target species. As a result of ICA, 2 positive (Berberis crataegina, Juniperus oxycedrus), 2 negative (Phillyrea latifolia, Quercus coccifera) for Crimean Juniper, I positive (Juniperus oxycedrus), 3 negative (Onopordium acanthium, Fraxinus ornus, Phillyrea latifolia) for Anatolian black pine, 3 positive (Paliurus spina-christi, Quercus coccifer, Crataegus orientalis), 2 negative (Berberis crataegina, Astragalus nanus) for Red pine and 3 positive (Berberis crataegina, Rhamnus oleoides, Astragalus prusianus) 2 negative (Paliurus spina-christi, Quercus cerris) for Taurus cedarwere defined as indicator plant species. In this way, practical information was obtained for selecting the most suitable species, among the target species, for afforestation efforts in Burdur district.

  4. Evaluating Hypotheses of Plant Species Invasions on Mediterranean Islands: Inverse Patterns between Alien and Endemic Species

    Directory of Open Access Journals (Sweden)

    Alexander Bjarnason

    2017-08-01

    Full Text Available Invasive alien species cause major changes to ecosystem functioning and patterns of biodiversity, and the main factors involved in invasion success remain contested. Using the Mediterranean island of Crete, Greece as a case study, we suggest a framework for analyzing spatial data of alien species distributions, based on environmental predictors, aiming to gain an understanding of their spatial patterns and spread. Mediterranean islands are under strong ecological pressure from invading species due to their restricted size and increased human impact. Four hypotheses of invasibility, the “propagule pressure hypothesis” (H1, “biotic resistance hypothesis vs. acceptance hypothesis” (H2, “disturbance-mediated hypothesis” (H3, and “environmental heterogeneity hypothesis” (H4 were tested. Using data from alien, native, and endemic vascular plant species, the propagule pressure, biotic resistance vs. acceptance, disturbance-mediated, and environmental heterogeneity hypotheses were tested with Generalized Additive Modeling (GAM of 39 models. Based on model selection, the optimal model includes the positive covariates of native species richness, the negative covariates of endemic species richness, and land area. Variance partitioning between the four hypotheses indicated that the biotic resistance vs. acceptance hypothesis explained the vast majority of the total variance. These results show that areas of high species richness have greater invasibility and support the acceptance hypothesis and “rich-get-richer” distribution of alien species. The negative correlation between alien and endemic species appears to be predominantly driven by altitude, with fewer alien and more endemic species at greater altitudes, and habitat richness. The negative relationship between alien and endemic species richness provides potential for understanding patterns of endemic and alien species on islands, contributing to more effective conservation

  5. Two-species occupancy modeling accounting for species misidentification and nondetection

    Science.gov (United States)

    Chambert, Thierry; Grant, Evan H. Campbell; Miller, David A. W.; Nichols, James; Mulder, Kevin P.; Brand, Adrianne B,

    2018-01-01

    1. In occupancy studies, species misidentification can lead to false positive detections, which can cause severe estimator biases. Currently, all models that account for false positive errors only consider omnibus sources of false detections and are limited to single species occupancy. 2. However, false detections for a given species often occur because of the misidentification with another, closely-related species. To exploit this explicit source of false positive detection error, we develop a two-species occupancy model that accounts for misidentifications between two species of interest. As with other false positive models, identifiability is greatly improved by the availability of unambiguous detections at a subset of site-occasions. Here, we consider the case where some of the field observations can be confirmed using laboratory or other independent identification methods (“confirmatory data”). 3. We performed three simulation studies to (1) assess the model’s performance under various realistic scenarios, (2) investigate the influence of the proportion of confirmatory data on estimator accuracy, and (3) compare the performance of this two-species model with that of the single-species false positive model. The model shows good performance under all scenarios, even when only small proportions of detections are confirmed (e.g., 5%). It also clearly outperforms the single-species model.

  6. Bias correction in species distribution models: pooling survey and collection data for multiple species.

    Science.gov (United States)

    Fithian, William; Elith, Jane; Hastie, Trevor; Keith, David A

    2015-04-01

    Presence-only records may provide data on the distributions of rare species, but commonly suffer from large, unknown biases due to their typically haphazard collection schemes. Presence-absence or count data collected in systematic, planned surveys are more reliable but typically less abundant.We proposed a probabilistic model to allow for joint analysis of presence-only and survey data to exploit their complementary strengths. Our method pools presence-only and presence-absence data for many species and maximizes a joint likelihood, simultaneously estimating and adjusting for the sampling bias affecting the presence-only data. By assuming that the sampling bias is the same for all species, we can borrow strength across species to efficiently estimate the bias and improve our inference from presence-only data.We evaluate our model's performance on data for 36 eucalypt species in south-eastern Australia. We find that presence-only records exhibit a strong sampling bias towards the coast and towards Sydney, the largest city. Our data-pooling technique substantially improves the out-of-sample predictive performance of our model when the amount of available presence-absence data for a given species is scarceIf we have only presence-only data and no presence-absence data for a given species, but both types of data for several other species that suffer from the same spatial sampling bias, then our method can obtain an unbiased estimate of the first species' geographic range.

  7. Seasonal species interactions minimize the impact of species turnover on the likelihood of community persistence.

    Science.gov (United States)

    Saavedra, Serguei; Rohr, Rudolf P; Fortuna, Miguel A; Selva, Nuria; Bascompte, Jordi

    2016-04-01

    Many of the observed species interactions embedded in ecological communities are not permanent, but are characterized by temporal changes that are observed along with abiotic and biotic variations. While work has been done describing and quantifying these changes, little is known about their consequences for species coexistence. Here, we investigate the extent to which changes of species composition impact the likelihood of persistence of the predator-prey community in the highly seasonal Białowieza Primeval Forest (northeast Poland), and the extent to which seasonal changes of species interactions (predator diet) modulate the expected impact. This likelihood is estimated extending recent developments on the study of structural stability in ecological communities. We find that the observed species turnover strongly varies the likelihood of community persistence between summer and winter. Importantly, we demonstrate that the observed seasonal interaction changes minimize the variation in the likelihood of persistence associated with species turnover across the year. We find that these community dynamics can be explained as the coupling of individual species to their environment by minimizing both the variation in persistence conditions and the interaction changes between seasons. Our results provide a homeostatic explanation for seasonal species interactions and suggest that monitoring the association of interactions changes with the level of variation in community dynamics can provide a good indicator of the response of species to environmental pressures.

  8. Socially-parasitic Myrmica species (Hymenoptera, Formicidae) of Himalaya, with the description of a new species.

    Science.gov (United States)

    Bharti, Himender; Radchenko, Alexander; Sasi, Sishal

    2016-01-01

    A new socially-parasitic species, Myrmica latra sp. n. is described based on a queen and male from Indian Himalaya. Its queen differs from other species by the distinctly narrower petiole and postpetiole, blunt and non-divergent propodeal spines, and a darker body colour. The taxonomic position of the three known Himalayan socially-parasitic Myrmica species is discussed, and Myrmica ereptrix Bolton 1988 is transferred to the smythiesii species-group. It is supposed that Myrmica nefaria Bharti 2012 is a temporary social parasite, but Myrmica ereptrix and Myrmica latra sp. n. are permanent social parasites, and a key for their identification is provided.

  9. Onychiurid species from Wanda Mountains in China, with descriptions of two new species (Collembola, Onychiuridae)

    Science.gov (United States)

    Sun, Xin; Wu, Donghui

    2014-01-01

    Abstract A checklist of onychiurid species from the Wanda Mountains in China is presented. Eighteen species belonging to twelve genera have been found, including two new species. Bionychiurus qinglongensis sp. n. can be easily distinguished from other known species of the genus by the absence of pseudocelli on Th. I tergum and fewer number of vesicles in postantennal organ. Onychiurus heilongjiangensis sp. n. is diagnosed by pseudocellar formulae as 32/133/33352 dorsally and 3/011/31120 ventrally, parapseudocellar formula as 0/000/111001+1m, ratio of anal spine/unguis as 0.6, unguiculus without inner basal lamella, and male ventral organ absent. PMID:25147452

  10. Reconciliation of Gene and Species Trees

    Directory of Open Access Journals (Sweden)

    L. Y. Rusin

    2014-01-01

    Full Text Available The first part of the paper briefly overviews the problem of gene and species trees reconciliation with the focus on defining and algorithmic construction of the evolutionary scenario. Basic ideas are discussed for the aspects of mapping definitions, costs of the mapping and evolutionary scenario, imposing time scales on a scenario, incorporating horizontal gene transfers, binarization and reconciliation of polytomous trees, and construction of species trees and scenarios. The review does not intend to cover the vast diversity of literature published on these subjects. Instead, the authors strived to overview the problem of the evolutionary scenario as a central concept in many areas of evolutionary research. The second part provides detailed mathematical proofs for the solutions of two problems: (i inferring a gene evolution along a species tree accounting for various types of evolutionary events and (ii trees reconciliation into a single species tree when only gene duplications and losses are allowed. All proposed algorithms have a cubic time complexity and are mathematically proved to find exact solutions. Solving algorithms for problem (ii can be naturally extended to incorporate horizontal transfers, other evolutionary events, and time scales on the species tree.

  11. SPECIES DIVERSITY AND STABILITY OF BIRD COMMUNITIES

    Directory of Open Access Journals (Sweden)

    Matsyura M.V.

    2011-12-01

    Full Text Available When comparing the suggested stability indicators, we obtained statistically significant correlations for indicators of annual stability of species and total number and standard deviation of the logarithm of the number. Annual Stability Index can be applied with a high degree of reliability as a characteristic of the averaged structure of the community and its pyramid of abundances. The results of correlation analysis confirm our assumptions about the correlation between stability over the years and indices of species diversity and relative uniformity.The final task of the study was to create a mathematical model of stability, where the independent variables are the indices of species diversity. The calculation of these indices allows forecasting birds’ community stability. According to the result of multiple regression for the indicators of diversity and stability of the breeding birds’ community highest correlation coefficients were obtained fro Shannon index and Simpson's dominance Index.Community stability could be determined by its overall species diversity. When considering the stability of community its diversity should be considered as a combination of uniformity of their total number and number of species. The most suitable predictors for the community stability were the nonparametric index of dominance and information-statistical indices, since they considered simultaneously evenness and richness. The community stability is subject of the complexity of its internal communications pattern.

  12. Diversity in protein glycosylation among insect species.

    Directory of Open Access Journals (Sweden)

    Gianni Vandenborre

    Full Text Available BACKGROUND: A very common protein modification in multicellular organisms is protein glycosylation or the addition of carbohydrate structures to the peptide backbone. Although the Class of the Insecta is the largest animal taxon on Earth, almost all information concerning glycosylation in insects is derived from studies with only one species, namely the fruit fly Drosophila melanogaster. METHODOLOGY/PRINCIPAL FINDINGS: In this report, the differences in glycoproteomes between insects belonging to several economically important insect orders were studied. Using GNA (Galanthus nivalis agglutinin affinity chromatography, different sets of glycoproteins with mannosyl-containing glycan structures were purified from the flour beetle (Tribolium castaneum, the silkworm (Bombyx mori, the honeybee (Apis mellifera, the fruit fly (D. melanogaster and the pea aphid (Acyrthosiphon pisum. To identify and characterize the purified glycoproteins, LC-MS/MS analysis was performed. For all insect species, it was demonstrated that glycoproteins were related to a broad range of biological processes and molecular functions. Moreover, the majority of glycoproteins retained on the GNA column were unique to one particular insect species and only a few glycoproteins were present in the five different glycoprotein sets. Furthermore, these data support the hypothesis that insect glycoproteins can be decorated with mannosylated O-glycans. CONCLUSIONS/SIGNIFICANCE: The results presented here demonstrate that oligomannose N-glycosylation events are highly specific depending on the insect species. In addition, we also demonstrated that protein O-mannosylation in insect species may occur more frequently than currently believed.

  13. Pain, Cannabis Species, and Cannabis Use Disorders

    Science.gov (United States)

    Cohen, Nicole L.; Heinz, Adrienne J.; Ilgen, Mark; Bonn-Miller, Marcel O.

    2016-01-01

    Objective: The purpose of this study was to examine whether individuals who used medical cannabis for chronic pain were at increased risk for cannabis use problems compared with individuals who used medical cannabis for other reasons (e.g., anxiety, insomnia, and muscle spasms). An additional aim was to determine whether individuals who used cannabis for chronic pain, as well as those who reported greater within-group pain levels, demonstrated a species preference (i.e., sativa, indica, hybrids) and the extent to which species preference was associated with cannabis use problems. Method: Participants were 163 medical cannabis users (77% male), recruited from a medical marijuana dispensary in California, who completed assessments of medical cannabis use motives, history, preferences (species type), and problems, as well as current pain level. Results: Individuals who used cannabis to manage chronic pain experienced fewer cannabis use problems than those who did not use it for pain; among those who used it for pain, the average pain level in the past week was not associated with cannabis use problems. Furthermore, individuals who used cannabis for chronic pain were more likely to use indica over sativa. Preference for indica was associated with fewer cannabis use problems than preference for hybrid species. Conclusions: Individuals who use cannabis to manage chronic pain may be at a lower risk for cannabis use problems, relative to individuals who use it for other indications, potentially as a function of their species preference. PMID:27172585

  14. Bracken: estimating species abundance in metagenomics data

    Directory of Open Access Journals (Sweden)

    Jennifer Lu

    2017-01-01

    Full Text Available Metagenomic experiments attempt to characterize microbial communities using high-throughput DNA sequencing. Identification of the microorganisms in a sample provides information about the genetic profile, population structure, and role of microorganisms within an environment. Until recently, most metagenomics studies focused on high-level characterization at the level of phyla, or alternatively sequenced the 16S ribosomal RNA gene that is present in bacterial species. As the cost of sequencing has fallen, though, metagenomics experiments have increasingly used unbiased shotgun sequencing to capture all the organisms in a sample. This approach requires a method for estimating abundance directly from the raw read data. Here we describe a fast, accurate new method that computes the abundance at the species level using the reads collected in a metagenomics experiment. Bracken (Bayesian Reestimation of Abundance after Classification with KrakEN uses the taxonomic assignments made by Kraken, a very fast read-level classifier, along with information about the genomes themselves to estimate abundance at the species level, the genus level, or above. We demonstrate that Bracken can produce accurate species- and genus-level abundance estimates even when a sample contains multiple near-identical species.

  15. Atomic collisions research with excited atomic species

    International Nuclear Information System (INIS)

    Hoogerland, M.D.; Gulley, R.J.; Colla, M.; Lu, W.; Milic, D.; Baldwin, K.G.H.; Buckman, S.J.

    1999-01-01

    Measurements and calculations of fundamental atomic collision and spectroscopic properties such as collision cross sections, reaction rates, transition probabilities etc. underpin the understanding and operation of many plasma and gas-discharge-based devices and phenomena, for example plasma processing and deposition. In almost all cases the complex series of reactions which sustains the discharge or plasma, or produces the reactive species of interest, has a precursor electron impact excitation, attachment, dissociation or ionisation event. These processes have been extensively studied in a wide range of atomic and molecular species and an impressive data base of collision cross sections and reaction rates now exists. However, most of these measurements are for collisions with stable atomic or molecular species which are initially in their ground electronic state. Relatively little information is available for scattering from excited states or for scattering from unstable molecular radicals. Examples of such species would be metastable excited rare gases, which are often used as buffer gases, or CF 2 radicals formed by electron impact dissociation in a CF 4 plasma processing discharge. We are interested in developing experimental techniques which will enable the quantitative study of such exotic atomic and molecular species. In this talk I would like to outline one such facility which is being used for studies of collisions with metastable He(2 3 S) atoms

  16. Exploring similarities among many species distributions

    Science.gov (United States)

    Simmerman, Scott; Wang, Jingyuan; Osborne, James; Shook, Kimberly; Huang, Jian; Godsoe, William; Simons, Theodore R.

    2012-01-01

    Collecting species presence data and then building models to predict species distribution has been long practiced in the field of ecology for the purpose of improving our understanding of species relationships with each other and with the environment. Due to limitations of computing power as well as limited means of using modeling software on HPC facilities, past species distribution studies have been unable to fully explore diverse data sets. We build a system that can, for the first time to our knowledge, leverage HPC to support effective exploration of species similarities in distribution as well as their dependencies on common environmental conditions. Our system can also compute and reveal uncertainties in the modeling results enabling domain experts to make informed judgments about the data. Our work was motivated by and centered around data collection efforts within the Great Smoky Mountains National Park that date back to the 1940s. Our findings present new research opportunities in ecology and produce actionable field-work items for biodiversity management personnel to include in their planning of daily management activities.

  17. Species richness, area and climate correlates

    DEFF Research Database (Denmark)

    Nogues, David Bravo; Bastos Araujo, Miguel

    2006-01-01

    affects: (1) the selection of climate variables entering a species richness model; and (2) the accuracy of models in predicting species richness in unsampled grid cells. Location Western Europe. Methods Models are developed for European plant, breeding bird, mammal and herptile species richness using...... seven climate variables. Generalized additive models are used to relate species richness, climate and area. Results We found that variation in the grid cell area was large (50 × 50 km: 8-3311 km2; 220 × 220: 193-55,100 km2), but this did not affect the selection of variables in the models. Similarly...... support the assumption that variation in near-equal area cells may be of second-order importance for models explaining or predicting species richness in relation to climate, although there is a possibility that drops in accuracy might increase with grid cell size. The results are, however, contingent...

  18. Pain, Cannabis Species, and Cannabis Use Disorders.

    Science.gov (United States)

    Cohen, Nicole L; Heinz, Adrienne J; Ilgen, Mark; Bonn-Miller, Marcel O

    2016-05-01

    The purpose of this study was to examine whether individuals who used medical cannabis for chronic pain were at increased risk for cannabis use problems compared with individuals who used medical cannabis for other reasons (e.g., anxiety, insomnia, and muscle spasms). An additional aim was to determine whether individuals who used cannabis for chronic pain, as well as those who reported greater within-group pain levels, demonstrated a species preference (i.e., sativa, indica, hybrids) and the extent to which species preference was associated with cannabis use problems. Participants were 163 medical cannabis users (77% male), recruited from a medical marijuana dispensary in California, who completed assessments of medical cannabis use motives, history, preferences (species type), and problems, as well as current pain level. Individuals who used cannabis to manage chronic pain experienced fewer cannabis use problems than those who did not use it for pain; among those who used it for pain, the average pain level in the past week was not associated with cannabis use problems. Furthermore, individuals who used cannabis for chronic pain were more likely to use indica over sativa. Preference for indica was associated with fewer cannabis use problems than preference for hybrid species. Individuals who use cannabis to manage chronic pain may be at a lower risk for cannabis use problems, relative to individuals who use it for other indications, potentially as a function of their species preference.

  19. 77 FR 30261 - Petition To List 83 Species of Coral as Threatened or Endangered Under the Endangered Species Act...

    Science.gov (United States)

    2012-05-22

    ... List 83 Species of Coral as Threatened or Endangered Under the Endangered Species Act (ESA) AGENCY... Diversity (CBD) to list 83 coral species as threatened or endangered under the Endangered Species Act (ESA... the U.S. Endangered Species Act (Status Review Report) and the draft Management Report for 82 Corals...

  20. Current understanding of multi-species biofilms

    DEFF Research Database (Denmark)

    Yang, Liang; Liu, Yang; Wu, Hong

    2011-01-01

    every year worldwide to deal with damage to equipment, contaminations of products, energy losses, and infections in human beings resulted from microbial biofilms. Microorganisms compete, cooperate, and communicate with each other in multi-species biofilms. Understanding the mechanisms of multi......Direct observation of a wide range of natural microorganisms has revealed the fact that the majority of microbes persist as surface-attached communities surrounded by matrix materials, called biofilms. Biofilms can be formed by a single bacterial strain. However, most natural biofilms are actually......-species biofilm formation will facilitate the development of methods for combating bacterial biofilms in clinical, environmental, industrial, and agricultural areas. The most recent advances in the understanding of multi-species biofilms are summarized and discussed in the review....

  1. Assessing species vulnerability to climate change

    Science.gov (United States)

    Pacifici, Michela; Foden, Wendy B.; Visconti, Piero; Watson, James E. M.; Butchart, Stuart H. M.; Kovacs, Kit M.; Scheffers, Brett R.; Hole, David G.; Martin, Tara G.; Akçakaya, H. Resit; Corlett, Richard T.; Huntley, Brian; Bickford, David; Carr, Jamie A.; Hoffmann, Ary A.; Midgley, Guy F.; Pearce-Kelly, Paul; Pearson, Richard G.; Williams, Stephen E.; Willis, Stephen G.; Young, Bruce; Rondinini, Carlo

    2015-03-01

    The effects of climate change on biodiversity are increasingly well documented, and many methods have been developed to assess species' vulnerability to climatic changes, both ongoing and projected in the coming decades. To minimize global biodiversity losses, conservationists need to identify those species that are likely to be most vulnerable to the impacts of climate change. In this Review, we summarize different currencies used for assessing species' climate change vulnerability. We describe three main approaches used to derive these currencies (correlative, mechanistic and trait-based), and their associated data requirements, spatial and temporal scales of application and modelling methods. We identify strengths and weaknesses of the approaches and highlight the sources of uncertainty inherent in each method that limit projection reliability. Finally, we provide guidance for conservation practitioners in selecting the most appropriate approach(es) for their planning needs and highlight priority areas for further assessments.

  2. Autofluorescence in eleocytes of some earthworm species.

    Directory of Open Access Journals (Sweden)

    Barbara Płytycz

    2006-04-01

    Full Text Available Immunocompetent cells of earthworms, coelomocytes, comprise adherent amoebocytes and granular eleocytes (chloragocytes. Both cell populations can be expelled via dorsal pores of adult earthworms by exposure to an electric current (4.5 V for 1 min. Analysis by phase contrast/fluorescence microscopy and flow cytometry demonstrated that eleocyte population of several species exhibits a strong autofluorescence. A high percentage (11-35% of autofluorescent eleocytes was recorded in Allolobophora chlorotica, Dendrodrilus rubidus, Eisenia fetida, and Octolasion sp. (O. cyaneum, O. tyrtaeum tyrtaeum and O. tyrtaeum lacteum. In contrast, autofluorescent coelomocytes were exceptionally scarce (less than 1% in representative Aporrectodea sp. (A. caliginosa and A. longa and Lumbricus sp. (L. castaneus, L. festivus, L. rubellus, L. terrestris. Thus, this paper for the first time describes profound intrinsic fluorescence of eleocytes in some--but not all--earthworm species. The function (if any and inter-species differences of the autofluorescent coelomocytes still remain elusive.

  3. The prairie dog as a keystone species

    Science.gov (United States)

    Kotliar, Natasha B.; Miller, Brian J.; Reading, Richard P.; Clark, Timothy W.; Hoogland, John L.

    2006-01-01

    The prairie dog has a pronounced impact on its grassland ecosystem (King 1955; Uresk and Bjugstad 1983; Miller et al. 1994; Society for Conservation Biology 1994; Wuerthner 1997; Johnsgard 2005). They maintain short vegetation by their grazing and by selective removal of tall plants and shrubs; provide shelter, foraging grounds, and nesting habitat for a diverse array of animals; serve as prey for many predators; and alter soil chemistry.Do these impacts mean that the prairie dog is a keystone species? To investigate, we first scrutinize the definition for a keystone species. We then document both vertebrates and invertebrates that associate with prairie dogs and their colony-sites. We examine ecosystem processes at colony-sites, and then assess whether the prairie dog is a legitimate keystone species. Finally, we explore the implications of keystone status for the conservation of prairie dogs.

  4. Forms and genesis of species abundance distributions

    Directory of Open Access Journals (Sweden)

    Evans O. Ochiaga

    2015-12-01

    Full Text Available Species abundance distribution (SAD is one of the most important metrics in community ecology. SAD curves take a hollow or hyperbolic shape in a histogram plot with many rare species and only a few common species. In general, the shape of SAD is largely log-normally distributed, although the mechanism behind this particular SAD shape still remains elusive. Here, we aim to review four major parametric forms of SAD and three contending mechanisms that could potentially explain this highly skewed form of SAD. The parametric forms reviewed here include log series, negative binomial, lognormal and geometric distributions. The mechanisms reviewed here include the maximum entropy theory of ecology, neutral theory and the theory of proportionate effect.

  5. Taxonomy of Penicillium citrinum and related species

    DEFF Research Database (Denmark)

    Houbraken, J.A.M.P.; Frisvad, Jens Christian; Samson, A.F.

    2010-01-01

    are related to P. citrinum, P. gorlenkoanum is revived, Penicillium hetheringtonii sp. nov. and Penicillium tropicoides sp. nov. are described here as new species, and the combination Penicillium tropicum is proposed. Penicillium hetheringtonii is closely related to P. citrinum and differs in having slightly......Penicillium citrinum and related species have been examined using a combination of partial beta-tubulin, calmodulin and ITS sequence data, extrolite patterns and phenotypic characters. It is concluded that seven species belong to the series Citrina. Penicillium sizovae and Penicillium steckii...... broader stipes, metulae in verticils of four or more and the production of an uncharacterized metabolite, tentatively named PR1-x. Penicillium tropicoides resembles P. tropicum, but differs in the slow maturation of the cleistothecia, slower growth at 30A degrees C and the production of isochromantoxins...

  6. WHITE BLISTER SPECIES (Albuginaceae ON WEEDS

    Directory of Open Access Journals (Sweden)

    Karolina Vrandečić

    2011-06-01

    Full Text Available The obligate fungi inside the family Albuginaceae are widespread world wide and cause white rust or white blister disease. Mycopopulation of weeds has been researched within the project „The role of weeds in epidemiology of row-crop diseases“. The aim of this research was to identify white blister species occurring on weeds in Eastern Croatia. Weed plants with disease symptoms characteristic for white blister species have been collected since 2001 on location Slavonia and Baranja country. Determination of white blister species was based on morphological characters of pathogen and the host. Wilsoniana bliti was determined on Amaranthus retroflexus and Amaranthus hybridus leaves. Capsella bursa pastoris is a host for Albugo candida. Ambrosia artemisiifolia is a host for Pustula sp. and Cirsium arvense was found to be host for Pustula spinulosa. Wilsoniana portulaceae was determined on Portulaca oleracea.

  7. Distribution of Vulpia species (Poaceae in Poland

    Directory of Open Access Journals (Sweden)

    Ludwik Frey

    2011-01-01

    Full Text Available The distribution of four species of the genus Vulpia [V. myuros (L. C.C. Gmel., V. bromoides (L. S.F. Gray, V. ciliata Dumort. and V. geniculata (L. Link] reported in Poland has been studied. Currently, V. myuros and especially V. bromoides are very rare species, and their greatest concentration can be found only in the Lower Silesia region. The number of their localities decreased after 1950 and it seems resonable to include both species in the "red list" of threatened plants in Poland: V. myuros in the EN category, V. bromoides in the CR category. V. ciliata and V. geniculata are very rare ephemerophytes and their localities not confirmed during ca 60 years are of historical interest only.

  8. Computational botany methods for automated species identification

    CERN Document Server

    Remagnino, Paolo; Wilkin, Paul; Cope, James; Kirkup, Don

    2017-01-01

    This book discusses innovative methods for mining information from images of plants, especially leaves, and highlights the diagnostic features that can be implemented in fully automatic systems for identifying plant species. Adopting a multidisciplinary approach, it explores the problem of plant species identification, covering both the concepts of taxonomy and morphology. It then provides an overview of morphometrics, including the historical background and the main steps in the morphometric analysis of leaves together with a number of applications. The core of the book focuses on novel diagnostic methods for plant species identification developed from a computer scientist’s perspective. It then concludes with a chapter on the characterization of botanists' visions, which highlights important cognitive aspects that can be implemented in a computer system to more accurately replicate the human expert’s fixation process. The book not only represents an authoritative guide to advanced computational tools fo...

  9. Capsular Polysaccharide Expression in Commensal Streptococcus Species

    DEFF Research Database (Denmark)

    Skov Sørensen, Uffe B; Yao, Kaihu; Yang, Yonghong

    2016-01-01

    Expression of a capsular polysaccharide is considered a hallmark of most invasive species of bacteria, including Streptococcus pneumoniae, in which the capsule is among the principal virulence factors and is the basis for successful vaccines. Consequently, it was previously assumed that capsule....... pneumoniae evolved by import of cps fragments from commensal Streptococcus species, resulting in a mosaic of genes of different origins. The demonstrated antigenic identity of at least eight of the numerous capsular polysaccharide structures expressed by commensal streptococci with recognized serotypes of S...... of Streptococcus pneumoniae and is the basis for successful vaccines against infections caused by this important pathogen. Contrasting with previous assumptions, this study showed that expression of capsular polysaccharides by the same genetic mechanisms is a general property of closely related species...

  10. Combinatorial Cis-regulation in Saccharomyces Species

    Directory of Open Access Journals (Sweden)

    Aaron T. Spivak

    2016-03-01

    Full Text Available Transcriptional control of gene expression requires interactions between the cis-regulatory elements (CREs controlling gene promoters. We developed a sensitive computational method to identify CRE combinations with conserved spacing that does not require genome alignments. When applied to seven sensu stricto and sensu lato Saccharomyces species, 80% of the predicted interactions displayed some evidence of combinatorial transcriptional behavior in several existing datasets including: (1 chromatin immunoprecipitation data for colocalization of transcription factors, (2 gene expression data for coexpression of predicted regulatory targets, and (3 gene ontology databases for common pathway membership of predicted regulatory targets. We tested several predicted CRE interactions with chromatin immunoprecipitation experiments in a wild-type strain and strains in which a predicted cofactor was deleted. Our experiments confirmed that transcription factor (TF occupancy at the promoters of the CRE combination target genes depends on the predicted cofactor while occupancy of other promoters is independent of the predicted cofactor. Our method has the additional advantage of identifying regulatory differences between species. By analyzing the S. cerevisiae and S. bayanus genomes, we identified differences in combinatorial cis-regulation between the species and showed that the predicted changes in gene regulation explain several of the species-specific differences seen in gene expression datasets. In some instances, the same CRE combinations appear to regulate genes involved in distinct biological processes in the two different species. The results of this research demonstrate that (1 combinatorial cis-regulation can be inferred by multi-genome analysis and (2 combinatorial cis-regulation can explain differences in gene expression between species.

  11. Nocardiopsis species: Incidence, ecological roles and adaptations.

    Science.gov (United States)

    Bennur, Tahsin; Kumar, Ameeta Ravi; Zinjarde, Smita; Javdekar, Vaishali

    2015-05-01

    Members of the genus Nocardiopsis are ecologically versatile and biotechnologically important. They produce a variety of bioactive compounds such as antimicrobial agents, anticancer substances, tumor inducers, toxins and immunomodulators. They also secrete novel extracellular enzymes such as amylases, chitinases, cellulases, β-glucanases, inulinases, xylanases and proteases. Nocardiopsis species are aerobic, Gram-positive, non-acid-fast, catalase-positive actinomycetes with nocardioform substrate mycelia and their aerial mycelia bear long chains of spores. Their DNA possesses high contents of guanine and cytosine. There is a marked variation in properties of the isolates obtained from different ecological niches and their products. An important feature of several species is their halophilic or halotolerant nature. They are associated with a variety of marine and terrestrial biological forms wherein they produce antibiotics and toxins that help their hosts in evading pathogens and predators. Two Nocardiopsis species, namely, N. dassonvillei and N. synnemataformans (among the thirty nine reported ones) are opportunistic human pathogens and cause mycetoma, suppurative infections and abscesses. Nocardiopsis species are present in some plants (as endophytes or surface microflora) and their rhizospheres. Here, they are reported to produce enzymes such as α-amylases and antifungal agents that are effective in warding-off plant pathogens. They are prevalent as free-living entities in terrestrial locales, indoor locations, marine ecosystems and hypersaline habitats on account of their salt-, alkali- and desiccation-resistant behavior. In such natural locations, Nocardiopsis species mainly help in recycling organic compounds. Survival under these diverse conditions is mediated by the production of extracellular enzymes, antibiotics, surfactants, and the accumulation of compatible solutes. The accommodative genomic features of Nocardiopsis species support their existence

  12. The Drosophila bipectinata species complex: degree of sterility and ...

    Indian Academy of Sciences (India)

    sophila bipectinata species complex, comprising four closely related species namely D. bipectinata, D. parabipectinata,. D. malerkotliana and D. ... vials with four males (two each from the respective parental species, to increase the probability ...

  13. Cryptic Sebastes norvegicus species in Greenland waters revealed by microsatellites

    DEFF Research Database (Denmark)

    Saha, Atal; Hauser, Lorenz; Hedeholm, Rasmus

    2017-01-01

    Identification of cryptic species can have profound implications in fishery management, conservation and biodiversity contexts. In the North Atlantic, the genus Sebastes is currently represented by four species, although additional cryptic species have been assumed. The connectivity of the gene...

  14. Genetic factors in Threatened Species Recovery Plans on three continents

    Science.gov (United States)

    Threatened species' recovery planning is applied globally to stem the current species extinction crisis. Evidence supports a key role of genetic processes, such as inbreeding depression, in determining species viability. We examined whether genetic factors are considered in threa...

  15. Variation in biofouling on different species of Indian timbers

    Digital Repository Service at National Institute of Oceanography (India)

    Raveendran, T.V.; Wagh, A.B.

    Biofouling on twenty species of wood exposed in waters of Mormugao Harbour, Goa, India have been presented. Macrofouling biomass varied from species to species. Maximum biomass was recorded on Artocarpus chaplasha (4 kg/m2) and minimum on Hopea...

  16. Hypoxylon species on beech and other broadleaves

    Directory of Open Access Journals (Sweden)

    Milijašević Tanja

    2004-01-01

    Full Text Available Fungi in the genus Hypoxylon cause wood decay and most of them are saprophytes on dead wood or parasites of weakness. The following species in this genus were identified in this study performed at several localities in Serbia and Montenegro: H. deustum, H. fragiforme, H. nummularium, H. multiforme, H. rubiginosum and H. fuscum. Among them the most significant species is H. deustum, the fungus causing root and butt rot of standing beech trees. It was recorded from all coppice and high forests of beech. This paper presents the morphological characteristics of the recorded fungi their range, plant hosts and significance.

  17. Functional biology of sympatric krill species

    DEFF Research Database (Denmark)

    Agersted, Mette Dalgaard; Nielsen, Torkel Gissel

    2016-01-01

    Here we compare the functional biology of the sympatric krill species, Meganyctiphanes norvegica and Thysanoessa inermis. For M. norvegica, we investigated functional responses on diatoms and copepods, together with prey size spectra on plankton ,400 mm and copepods in the size range 500–3220 mm....... For T. inermis, only prey size spectrum on plankton ,400 mm were investigated. The prey size ranges of both species include organisms ,400 mm, and they consequently graze on several trophic levels. However, T. inermis feed on cells ,10 mm equivalent spherical diameter (ESD), whereas M. norvegica only...

  18. Molecular activation analysis for chemical species studies

    International Nuclear Information System (INIS)

    Chai Zhifang; Mao Xueying; Wang Yuqi; Sun Jingxin; Qian Qingfang; Hou Xiaolin; Zhang Peiqun; Chen Chunying; Feng Weiyu; Ding Wenjun; Li Xiaolin; Li Chunsheng; Dai Xiongxin

    2001-01-01

    The Molecular Activation Analysis (MAA) mainly refers to an activation analysis method that is able to provide information about the chemical species of elements in systems of interest, though its exact definition has remained to be assigned. Its development is strongly stimulated by the urgent need to know the chemical species of elements, because the bulk contents or concentrations are often insignificant for judging biological, environmental or geochemical effects of elements. In this paper, the features, methodology and limitation of MAA were outlined. Further, the up-to-date MAA progress made in our laboratory was introduced as well. (author)

  19. A new dimension in documenting new species

    DEFF Research Database (Denmark)

    Akkari, Nesrine; Enghoff, Henrik; Metscher, Brian D.

    2015-01-01

    We review the state-of-the-art approaches currently applied in myriapod taxonomy, and we describe, for the first time, a new species of millipede (Ommatoiulus avatar n. sp., family Julidae) using high-resolution X-ray microtomography (microCT) as a substantive adjunct to traditional morphological...... examination. We present 3D models of the holotype and paratype specimens and discuss the potential of this non-destructive technique in documenting new species of millipedes and other organisms. The microCT data have been uploaded to an open repository (Dryad) to serve as the first actual millipede cybertypes...

  20. A new alamellate Hygrocybe species from Ecuador

    DEFF Research Database (Denmark)

    Læssøe, Thomas; Boertmann, David

    2008-01-01

    The first known species of Hygrocybe with a smooth hymenophore is described based on material from the eastern slopes of Andean Ecuador. It is considered as incertae sedis in the genus due to a lack of conclusive morphological characters and in the absence of sequence data.......The first known species of Hygrocybe with a smooth hymenophore is described based on material from the eastern slopes of Andean Ecuador. It is considered as incertae sedis in the genus due to a lack of conclusive morphological characters and in the absence of sequence data....

  1. FEATURES DIGESTION OF STURGEON SPECIES (ACIPENSERIDAE (REVIEW

    Directory of Open Access Journals (Sweden)

    M. Simon

    2016-09-01

    Full Text Available Purpose. To review scientific sources are about the anatomical, physiological and biochemical characteristics of the digestive system and proper digestion process in the sturgeon species (Acipenseridae. Outline the common anatomical and morphological characteristics of the gastrointestinal tract. Consider the activity of digestive enzymes and the influence of various factors. Findings. Review of scientific papers reveals that although the digestion of sturgeon are broadly similar to those of the cartilaginous and bony fish, there are a number of species specificity. In particular, sturgeon enzymes have a wider temperature and hydrogen ranges. It is confirmed that temperature adaptations of digestive system poikilothermic organ-isms are realised mainly thanks to reorganisations of fermental systems. It is shown that enzymes in sturgeons are adjustable, as their activity level significantly changes under the influence of divalent metal ions (Mn2+, Fe2+, Co2+, Ni2+, Cu2+, Zn2+. The assumption that evolutionary adaptation of hydrolytic function of intestines of fishes to temperature conditions of an inhabitancy takes place, apparently, is made. The paper describes the effect of sex and age factors on the level of activity of enzymes of sturgeons. Set out the regularities of circadian rhythms of the fish of this family. Showed specific features of the liver and its involvement in lipid metabolism and antioxidant defense system. Practical value. The knowledge of hydrolysis characteristics of a diet of sturgeon species is important for the efficiency estimation of feeding and understanding of evolutionary and ecological aspects of digestion physiology. Systematized data on the digestive system of fish sturgeon species are of interest a wide range of research in two main areas. Firstly, although the sturgeon are relict species, but the adaptation of their digestive system is still going on, allowing you to analyze the evolutionary development of the

  2. Big data of tree species distributions

    DEFF Research Database (Denmark)

    Serra-Diaz, Josep M.; Enquist, Brian J.; Maitner, Brian

    2018-01-01

    are currently available in big databases, several challenges hamper their use, notably geolocation problems and taxonomic uncertainty. Further, we lack a complete picture of the data coverage and quality assessment for open/public databases of tree occurrences. Methods: We combined data from five major...... and data aggregation, especially from national forest inventory programs, to improve the current publicly available data.......Background: Trees play crucial roles in the biosphere and societies worldwide, with a total of 60,065 tree species currently identified. Increasingly, a large amount of data on tree species occurrences is being generated worldwide: from inventories to pressed plants. While many of these data...

  3. 77 FR 15701 - Highly Migratory Species; 2006 Consolidated Highly Migratory Species Fishery Management Plan...

    Science.gov (United States)

    2012-03-16

    ... Species Fishery Management Plan; Amendment 4 AGENCY: National Marine Fisheries Service (NMFS), National.... SUMMARY: This fishery management plan (FMP) amendment addresses Atlantic highly migratory species (HMS... to create an HMS Caribbean Small Boat Commercial Permit (CSBP) allowing fishing for and sales of...

  4. Invasive Species Science Branch: research and management tools for controlling invasive species

    Science.gov (United States)

    Reed, Robert N.; Walters, Katie D.

    2015-01-01

    Invasive, nonnative species of plants, animals, and disease organisms adversely affect the ecosystems they enter. Like “biological wildfires,” they can quickly spread and affect nearly all terrestrial and aquatic ecosystems. Invasive species have become one of the greatest environmental challenges of the 21st century in economic, environmental, and human health costs, with an estimated effect in the United States of more than $120 billion per year. Managers of the Department of the Interior and other public and private lands often rank invasive species as their top resource management problem. The Invasive Species Science Branch of the Fort Collins Science Center provides research and technical assistance relating to management concerns for invasive species, including understanding how these species are introduced, identifying areas vulnerable to invasion, forecasting invasions, and developing control methods. To disseminate this information, branch scientists are developing platforms to share invasive species information with DOI cooperators, other agency partners, and the public. From these and other data, branch scientists are constructing models to understand and predict invasive species distributions for more effective management. The branch also has extensive herpetological and population biology expertise that is applied to harmful reptile invaders such as the Brown Treesnake on Guam and Burmese Python in Florida.

  5. Species composition of a soil invertebrate multi-species test system determines the level of ecotoxicity

    DEFF Research Database (Denmark)

    Sechi, Valentina; D'Annibale, Alessandra; Maraldo, Kristine

    2014-01-01

    A soil multi-species, SMS, experimental test system consisting of the natural microbial community, five collembolan species and a predatory mite along with either Enchytraeus crypticus or the earthworm Eisenia fetida were exposed to α-cypermethrin. A comparison of the performance of these two typ...

  6. The Quercus feeding Stigmella species of the West Palaearctic: new species, key and distribution (Lepidoptera: Nepticulidae)

    NARCIS (Netherlands)

    Nieukerken, van E.J.; Johansson, R.

    2003-01-01

    The species of the Stigmella ruficapitella group occurring in the Western Palaearctic and feeding on Quercus are reviewed. We recognise 19 species, five of which are described as new: Stigmella fasciata sp. n. on Quercus pubescens from Slovenia, Croatia, Greece and Turkey, S. cocciferae sp. n. on Q.

  7. Usefulness of the wildlife species as a focal species in the forest ...

    African Journals Online (AJOL)

    yasinucarlı

    2011-03-14

    Mar 14, 2011 ... keystone species are the most important species in that ecosystems to sustainability. ... bear, Wolf and Eurasian Lynx can be also used as a flagship, indicator and ... Washington's Pacific coast. ... sidered keystones because their effect is not dispro- ..... conservation of South American terrestrial mammals.

  8. A new Amazonian species from the Drosophila annulimana species group (Diptera, Drosophilidae

    Directory of Open Access Journals (Sweden)

    Marco S. Gottschalk

    2012-12-01

    Full Text Available Drosophila caxiuana sp. nov., Drosophila subgenus, is described and illustrated. This new species was collected in the Amazonian Biome (Caquajó river, Portel, Pará, Brazil and is an atypical species to the group due the unusual morphology of the male terminalia.

  9. A Framework for Spatial Risk Assessments: Potential Impacts of Nonindigenous Invasive Species on Native Species

    Directory of Open Access Journals (Sweden)

    Craig R. Allen

    2006-06-01

    Full Text Available Many populations of wild animals and plants are declining and face increasing threats from habitat fragmentation and loss as well as exposure to stressors ranging from toxicants to diseases to invasive nonindigenous species. We describe and demonstrate a spatially explicit ecological risk assessment that allows for the incorporation of a broad array of information that may influence the distribution of an invasive species, toxicants, or other stressors, and the incorporation of landscape variables that may influence the spread of a species or substances. The first step in our analyses is to develop species models and quantify spatial overlap between stressor and target organisms. Risk is assessed as the product of spatial overlap and a hazard index based on target species vulnerabilities to the stressor of interest. We illustrate our methods with an example in which the stressor is the ecologically destructive nonindigenous ant, Solenopsis invicta, and the targets are two declining vertebrate species in the state of South Carolina, USA. A risk approach that focuses on landscapes and that is explicitly spatial is of particular relevance as remaining undeveloped lands become increasingly uncommon and isolated and more important in the management and recovery of species and ecological systems. Effective ecosystem management includes the control of multiple stressors, including invasive species with large impacts, understanding where those impacts may be the most severe, and implementing management strategies to reduce impacts.

  10. 78 FR 65974 - Atlantic Highly Migratory Species; Advisory Panel for Atlantic Highly Migratory Species Southeast...

    Science.gov (United States)

    2013-11-04

    ... Management Councils, the 18 states in the Atlantic and Gulf of Mexico, both the U.S. Virgin Islands and... DEPARTMENT OF COMMERCE National Oceanic and Atmospheric Administration RIN 0648-XC935 Atlantic Highly Migratory Species; Advisory Panel for Atlantic Highly Migratory Species Southeast Data, Assessment...

  11. 76 FR 65700 - Atlantic Highly Migratory Species; Advisory Panel for Atlantic Highly Migratory Species Southeast...

    Science.gov (United States)

    2011-10-24

    .... Virgin Islands and Puerto Rico, and each of the constituent interstate commissions: the Atlantic States... DEPARTMENT OF COMMERCE National Oceanic and Atmospheric Administration RIN 0648-XA776 Atlantic Highly Migratory Species; Advisory Panel for Atlantic Highly Migratory Species Southeast Data, Assessment...

  12. 77 FR 59842 - Atlantic Highly Migratory Species; 2006 Consolidated Highly Migratory Species Fishery Management...

    Science.gov (United States)

    2012-10-01

    ... vessels permitted in the Atlantic tunas General category in Puerto Rico and 10 in the U.S. Virgin Islands... [Docket No. 080603729-2454-02] RIN 0648-AW83 Atlantic Highly Migratory Species; 2006 Consolidated Highly... management plan (FMP) amendment addresses Atlantic highly migratory species (HMS) fishery management measures...

  13. 77 FR 19164 - Atlantic Highly Migratory Species; 2006 Consolidated Highly Migratory Species Fishery Management...

    Science.gov (United States)

    2012-03-30

    ... RIN 0648-XB121 Atlantic Highly Migratory Species; 2006 Consolidated Highly Migratory Species Fishery..., United States Virgin Islands (USVI) St. Thomas, USVI, San Juan, Puerto Rico (PR), Ponce, PR, and Mayaguez... INFORMATION CONTACT: Greg Fairclough or Randy Blankinship at 727-824-5399. SUPPLEMENTARY INFORMATION: Atlantic...

  14. Multilocus phylogeny and coalescent species delimitation in Kotschy's gecko, Mediodactylus kotschyi: Hidden diversity and cryptic species

    Czech Academy of Sciences Publication Activity Database

    Kotsakiozi, P.; Jablonski, D.; Ilgaz, Ç.; Kumlutaş, Y.; Avci, A.; Meiri, S.; Itescu, Y.; Kukushkin, O.; Gvoždík, Václav; Scillitani, G.; Roussos, S. A.; Jandzik, D.; Kasapidis, P.; Lymberakis, P.; Poulakakis, N.

    2018-01-01

    Roč. 125, August (2018), s. 177-187 ISSN 1055-7903 Institutional support: RVO:68081766 Keywords : Gekkonidae * Divergence times * Species delimitation * Species complex * Systematics * Eastern Mediterranean Subject RIV: EG - Zoology OBOR OECD: Zoology Impact factor: 4.419, year: 2016

  15. Setting maximum sustainable yield targets when yield of one species affects that of other species

    DEFF Research Database (Denmark)

    Rindorf, Anna; Reid, David; Mackinson, Steve

    2012-01-01

    species. But how should we prioritize and identify most appropriate targets? Do we prefer to maximize by focusing on total yield in biomass across species, or are other measures targeting maximization of profits or preserving high living qualities more relevant? And how do we ensure that targets remain...

  16. The Scirtothrips perseae species-group (Thysanoptera), with one new species from avocado, Persea americana.

    Science.gov (United States)

    Mound, Laurence A; Hoddle, Mark S

    2016-02-12

    Following recent molecular studies on avocado thrips, a new species is described from Costa Rica, Ecuador, and Colombia from the young leaves of avocado, Persea americana. Scirtothrips hansoni sp.n. is closely related to the Californian pest, S. perseae, and also to S. astrictus from Costa Rica that remains known from a single female. An illustrated key to these three species is provided.

  17. Species composition and abundance of Brevipalpus spp. on different citrus species in Mexican orchards.

    Science.gov (United States)

    Salinas-Vargas, D; Santillán-Galicia, M T; Valdez-Carrasco, J; Mora-Aguilera, G; Atanacio-Serrano, Y; Romero-Pescador, P

    2013-08-01

    We studied the abundance of Brevipalpus spp. in citrus orchards in the Mexican states of Yucatan, Quintana Roo and Campeche. Mites were collected from 100 trees containing a mixture of citrus species where sweet orange was always the main species. Eight collections were made at each location from February 2010 to February 2011. Mites from the genus Brevipalpus were separated from other mites surveyed and their abundance and relationships with the different citrus species were quantified throughout the collection period. A subsample of 25% of the total Brevipalpus mites collected were identified to species level and the interaction of mite species and citrus species were described. Brevipalpus spp. were present on all collection dates and their relative abundance was similar on all citrus species studies. The smallest number of mites collected was during the rainy season. Brevipalpus phoenicis (Geijskes) and Brevipalpus californicus (Banks) were the only two species present and they were found in all locations except Campeche, where only B. phoenicis was present. Yucatan and Campeche are at greater risk of leprosis virus transmission than Quintana Roo because the main vector, B. phoenicis, was more abundant than B. californicus. The implications of our results for the design of more accurate sampling and control methods for Brevipalpus spp. are discussed.

  18. Evaluation of a multiple-species approach to monitoring species at the ecoregional scale

    Science.gov (United States)

    Patricia N. Manley; William J. Zielinski; Matthew D. Schlesinger; Sylvia R. Mori

    2004-01-01

    Monitoring is required of land managers and conservation practitioners to assess the success of management actions. "Shortcuts" are sought to reduce monitoring costs, most often consisting of the selection of a small number of species that are closely monitored to represent the status of many associated species and environmental correlates. Assumptions...

  19. Species status and conservation issues of New Zealand's endemic Latrodectus spider species (Araneae: Theridiidae)

    DEFF Research Database (Denmark)

    Vink, Cor J; Sirvid, Phillip J; Malumbres-Olarte, Jagoba

    2008-01-01

    New Zealand has two endemic widow spiders, Latrodectus katipo Powell, 1871 and L. atritus Urquhart, 1890. Both species face many conservation threats and are actively managed. The species status of the Latrodectus spiders of New Zealand was assessed using molecular (COI, ITS1, ITS2...

  20. New Species of Calamus (Palmae from Lao and Myanmar

    Directory of Open Access Journals (Sweden)

    Andrew Henderson

    2007-06-01

    Full Text Available This paper concerns southern Asian species of Calamus from Beccari’s Groups V and VI. Calamus floribundus var. depauperatus is recognized as a distinct species, C. meghalayensis; C. kingianus is recognized as a distinct species from northeastern India and the Lao population of C. kingianus is recognized as a separate species, C. evansii; recently collected specimens from northern Myanmar are recognized as two distinct species, C. hukaungensis and C. spicatus; C. hypoleucus is recognized as a distinct species from Myanmar and the Lao population of C. hypoleucus is recognized as a distinct species, C minor. Nomenclature, descriptions, illustrations, specimens examined, and distribution maps are given for the new species.