WorldWideScience

Sample records for spatial structure determination

  1. Determination of scattering structures from spatial coherence measurements.

    Science.gov (United States)

    Zarubin, A M

    1996-03-01

    A new method of structure determination and microscopic imaging with short-wavelength radiations (charged particles, X-rays, neutrons), based on measurements of the modulus and the phase of the degree of spatial coherence of the scattered radiation, is developed. The underlying principle of the method--transfer of structural information about the scattering potential via spatial coherence of the secondary (scattering) source of radiation formed by this potential--is expressed by the generalization of the van Cittert-Zernike theorem to wave and particle scattering [A.M. Zarubin, Opt. Commun. 100 (1993) 491; Opt. Commun. 102 (1993) 543]. Shearing interferometric techniques are proposed for implementing the above measurements; the limits of spatial resolution attainable by reconstruction of the absolute square of a 3D scattering potential and its 2D projections from the measurements are analyzed. It is shown theoretically that 3D imaging with atomic resolution can be realized in a "synthetic aperture" electron or ion microscope and that a 3D resolution of about 6 nm can be obtained with a "synthetic aperture" X-ray microscope. A proof-of-principle optical experiment is presented.

  2. Spatial structure of transition metal complexes in solution determined by EXAFS spectroscopy

    Energy Technology Data Exchange (ETDEWEB)

    Erenburg, S.B. E-mail: simon@che.nsk.su; Bausk, N.V.; Zemskova, S.M.; Mazalov, L.N

    2000-06-21

    CdK EXAFS, ZnK and CuK EXAFS and XANES spectra were measured for solutions of cadmium, zinc and copper dialkyldithiocarbamates in organic solvents with varying donating abilities: tributylphosphine, methylene chloride, benzene, dibutylsulfide, pyridine, dimethylsulfoxide and for some model compounds. The parameters of the local surroundings of the Cd, Zn and Cu atoms for complex forms in solutions were determined using EXAFS spectroscopy. Spatial structure models of the complex forms in a metal chelate - nonaqueous solvent system are suggested.

  3. Spatial structure of transition metal complexes in solution determined by EXAFS spectroscopy

    International Nuclear Information System (INIS)

    Erenburg, S.B.; Bausk, N.V.; Zemskova, S.M.; Mazalov, L.N.

    2000-01-01

    CdK EXAFS, ZnK and CuK EXAFS and XANES spectra were measured for solutions of cadmium, zinc and copper dialkyldithiocarbamates in organic solvents with varying donating abilities: tributylphosphine, methylene chloride, benzene, dibutylsulfide, pyridine, dimethylsulfoxide and for some model compounds. The parameters of the local surroundings of the Cd, Zn and Cu atoms for complex forms in solutions were determined using EXAFS spectroscopy. Spatial structure models of the complex forms in a metal chelate - nonaqueous solvent system are suggested

  4. Dispersal Ability Determines the Role of Environmental, Spatial and Temporal Drivers of Metacommunity Structure

    NARCIS (Netherlands)

    Padial, André A.; Ceschin, Fernanda; Declerck, Steven A. J.; De Meester, Luc; Bonecker, Cláudia C.; Lansac-Tôha, Fabio A.; Rodrigues, Liliana; Rodrigues, Luzia C.; Train, Sueli; Velho, Luiz F. M.; Bini, Luis M.

    2014-01-01

    Recently, community ecologists are focusing on the relative importance of local environmental factors and proxies to dispersal limitation to explain spatial variation in community structure. Albeit less explored, temporal processes may also be important in explaining species composition variation in

  5. Dispersal Ability Determines the Role of Environmental, Spatial and Temporal Drivers of Metacommunity Structure

    Science.gov (United States)

    Padial, André A.; Ceschin, Fernanda; Declerck, Steven A. J.; De Meester, Luc; Bonecker, Cláudia C.; Lansac-Tôha, Fabio A.; Rodrigues, Liliana; Rodrigues, Luzia C.; Train, Sueli; Velho, Luiz F. M.; Bini, Luis M.

    2014-01-01

    Recently, community ecologists are focusing on the relative importance of local environmental factors and proxies to dispersal limitation to explain spatial variation in community structure. Albeit less explored, temporal processes may also be important in explaining species composition variation in metacommunities occupying dynamic systems. We aimed to evaluate the relative role of environmental, spatial and temporal variables on the metacommunity structure of different organism groups in the Upper Paraná River floodplain (Brazil). We used data on macrophytes, fish, benthic macroinvertebrates, zooplankton, periphyton, and phytoplankton collected in up to 36 habitats during a total of eight sampling campaigns over two years. According to variation partitioning results, the importance of predictors varied among biological groups. Spatial predictors were particularly important for organisms with comparatively lower dispersal ability, such as aquatic macrophytes and fish. On the other hand, environmental predictors were particularly important for organisms with high dispersal ability, such as microalgae, indicating the importance of species sorting processes in shaping the community structure of these organisms. The importance of watercourse distances increased when spatial variables were the main predictors of metacommunity structure. The contribution of temporal predictors was low. Our results emphasize the strength of a trait-based analysis and of better defining spatial variables. More importantly, they supported the view that “all-or- nothing” interpretations on the mechanisms structuring metacommunities are rather the exception than the rule. PMID:25340577

  6. Determinants of Regional Female Labour Market Participation in the Netherlands : A Spatial Structural Equation Modeling Approach

    NARCIS (Netherlands)

    Liu, An; Noback, Inge

    2011-01-01

    The paper analyses the determinants of female labour participation. Structural equation modelling is used to handle theoretical concepts and to solve the typical problem of multicollinearity. The proposed methodology is applied to a dataset for the year 2002 made up of a sample of 278 municipalities

  7. Flow environment and matrix structure interact to determine spatial competition in Pseudomonas aeruginosa biofilms.

    Science.gov (United States)

    Nadell, Carey D; Ricaurte, Deirdre; Yan, Jing; Drescher, Knut; Bassler, Bonnie L

    2017-01-13

    Bacteria often live in biofilms, which are microbial communities surrounded by a secreted extracellular matrix. Here, we demonstrate that hydrodynamic flow and matrix organization interact to shape competitive dynamics in Pseudomonas aeruginosa biofilms. Irrespective of initial frequency, in competition with matrix mutants, wild-type cells always increase in relative abundance in planar microfluidic devices under simple flow regimes. By contrast, in microenvironments with complex, irregular flow profiles - which are common in natural environments - wild-type matrix-producing and isogenic non-producing strains can coexist. This result stems from local obstruction of flow by wild-type matrix producers, which generates regions of near-zero shear that allow matrix mutants to locally accumulate. Our findings connect the evolutionary stability of matrix production with the hydrodynamics and spatial structure of the surrounding environment, providing a potential explanation for the variation in biofilm matrix secretion observed among bacteria in natural environments.

  8. Human and ecological determinants of the spatial structure of local breed diversity.

    Science.gov (United States)

    Colino-Rabanal, Victor J; Rodríguez-Díaz, Roberto; Blanco-Villegas, María José; Peris, Salvador J; Lizana, Miguel

    2018-04-24

    Since domestication, a large number of livestock breeds adapted to local conditions have been created by natural and artificial selection, representing one of the most powerful ways in which human groups have constructed niches to meet their need. Although many authors have described local breeds as the result of culturally and environmentally mediated processes, this study, located in mainland Spain, is the first aimed at identifying and quantifying the environmental and human contributions to the spatial structure of local breed diversity, which we refer to as livestock niche. We found that the more similar two provinces were in terms of human population, ecological characteristics, historical ties, and geographic distance, the more similar the composition of local breeds in their territories. Isolation by human population distance showed the strongest effect, followed by isolation by the environment, thus supporting the view of livestock niche as a socio-cultural product adapted to the local environment, in whose construction humans make good use of their ecological and cultural inheritances. These findings provide a useful framework to understand and to envisage the effects of climate change and globalization on local breeds and their livestock niches.

  9. Describing migration spatial structure

    NARCIS (Netherlands)

    Rogers, A; Willekens, F; Little, J; Raymer, J

    The age structure of a population is a fundamental concept in demography and is generally depicted in the form of an age pyramid. The spatial structure of an interregional system of origin-destination-specific migration streams is, however, a notion lacking a widely accepted definition. We offer a

  10. Exploring the determinants of phylogenetic diversity and assemblage structure in conifers across temporal, spatial, and taxonomic scales

    DEFF Research Database (Denmark)

    Eiserhardt, Wolf L.; Borchsenius, Finn; Sandel, Brody Steven

    -environmental models are important elements in this framework. Here, we integrate both types of data in order to explore the determinants of forest tree diversity using the conifers as a model group. Conifers are an old, diverse (ca. 650 spp. in 6 families) and widespread group of woody plants of high ecological...... and economic importance. They are better studied than most other globally distributed groups of forest trees, allowing integrative studies with high phylogenetic and spatial resolution. We analyse phylogenetic diversity, assemblage structure, and diversification rates for regional conifer assemblages...

  11. Determination and Verification of the main Dynamic Characteristics of a Spatially Large Structure Using the Basic Records Combination Method

    Directory of Open Access Journals (Sweden)

    Patricia Murzea

    2013-09-01

    Full Text Available The aim of the paper is to present some methodological aspects regarding the determination of the vibration eigenmodes of a spatially large, symmetric structure and afterwards to show the obtained results for a spectral analysis of the ground motion in the horizontal plane, corresponding to steady state micro-tremors. The recorded velocigrams concern the rigid body motion of the main ring of the structure (translation along different horizontal directions and rotation with respect to the vertical symmetry axis as well as ovalization oscillations (mainly second order ovalization. The necessary data for the analysis was obtained through an efficient technique of combining basic records gathered with the help of data acquisition systems, on site, using three different schemes for the placement of the recording sensors.

  12. Spatial Structure of Modern Moscow

    Directory of Open Access Journals (Sweden)

    Daria V. Goloukhova

    2015-01-01

    Full Text Available The article is focused on the spatial structure of modern Moscow and features distinguishing it from the cities of Western Europe and the US. The city has hybrid spatial structure combining elements which emerged on different stages of the city development. In the 14th century two tendencies appeared: the prestige of the city centre and opposition of Western districts as more prestigious to Eastern districts as less prestigious. Crucial spatial characteristics emerged in the Soviet era and up to now they define the image of Moscow. Firstly, it's a peculiar density profile. Population density in post-socialist cities tends to increase as we move further from the city centre while in Western European cities population density is the highest in central districts. Secondly, elementary units of Moscow spatial structure are so called micro-districts (neighbourhoods. The concept of a microdistrict was very popular with Soviet urban planners and widely applied in the residential construction. Another peculiarity of Moscow spatial structure is social heterogeneity of districts and absence of ethnic quarters or ghettos. Furthermore, significant part of the city area is occupied by former industrials zones which are not used anymore and need to be reconstructed. With transition to market economy a number of spatial changes emerged. They were partly related to the large-scale privatization, infill construction and lack of effective urban planning policy. In conclusion the article states the need for the new model of spatial organization which would take into account the specifics of Russian reality.

  13. Using Spatial Structure Analysis of Hyperspectral Imaging Data and Fourier Transformed Infrared Analysis to Determine Bioactivity of Surface Pesticide Treatment

    Directory of Open Access Journals (Sweden)

    Christian Nansen

    2010-03-01

    Full Text Available Many food products are subjected to quality control analyses for detection of surface residue/contaminants, and there is a trend of requiring more and more documentation and reporting by farmers regarding their use of pesticides. Recent outbreaks of food borne illnesses have been a major contributor to this trend. With a growing need for food safety measures and “smart applications” of insecticides, it is important to develop methods for rapid and accurate assessments of surface residues on food and feed items. As a model system, we investigated detection of a miticide applied to maize leaves and its miticidal bioactivity over time, and we compared two types of reflectance data: fourier transformed infrared (FTIR data and hyperspectral imaging (HI data. The miticide (bifenazate was applied at a commercial field rate to maize leaves in the field, with or without application of a surfactant, and with or without application of a simulated “rain event”. In addition, we collected FTIR and HI from untreated control leaves (total of five treatments. Maize leaf data were collected at seven time intervals from 0 to 48 hours after application. FTIR data were analyzed using conventional analysis of variance of miticide-specific vibration peaks. Two unique FTIR vibration peaks were associated with miticide application (1,700 cm−1 and 763 cm−1. The integrated intensities of these two peaks, miticide application, surfactant, rain event, time between miticide application, and rain event were used as explanatory variables in a linear multi-regression fit to spider mite mortality. The same linear multi-regression approach was applied to variogram parameters derived from HI data in five selected spectral bands (664, 683, 706, 740, and 747 nm. For each spectral band, we conducted a spatial structure analysis, and the three standard variogram parameters (“sill”, “range”, and “nugget” were examined as possible “indicators” of miticide

  14. The Determinants of VAT Introduction : A Spatial Duration Analysis

    NARCIS (Netherlands)

    Cizek, P.; Lei, J.; Ligthart, J.E.

    2012-01-01

    Abstract: The spatial survival models typically impose frailties, which characterize unobserved heterogeneity, to be spatially correlated. This specification relies highly on a pre-determinate covariance structure of the errors. However, the spatial effect may not only exist in the unobserved

  15. Determination of the complex refractive index segments of turbid sample with multispectral spatially modulated structured light and models approximation

    Science.gov (United States)

    Meitav, Omri; Shaul, Oren; Abookasis, David

    2017-09-01

    Spectral data enabling the derivation of a biological tissue sample's complex refractive index (CRI) can provide a range of valuable information in the clinical and research contexts. Specifically, changes in the CRI reflect alterations in tissue morphology and chemical composition, enabling its use as an optical marker during diagnosis and treatment. In the present work, we report a method for estimating the real and imaginary parts of the CRI of a biological sample using Kramers-Kronig (KK) relations in the spatial frequency domain. In this method, phase-shifted sinusoidal patterns at single high spatial frequency are serially projected onto the sample surface at different near-infrared wavelengths while a camera mounted normal to the sample surface acquires the reflected diffuse light. In the offline analysis pipeline, recorded images at each wavelength are converted to spatial phase maps using KK analysis and are then calibrated against phase-models derived from diffusion approximation. The amplitude of the reflected light, together with phase data, is then introduced into Fresnel equations to resolve both real and imaginary segments of the CRI at each wavelength. The technique was validated in tissue-mimicking phantoms with known optical parameters and in mouse models of ischemic injury and heat stress. Experimental data obtained indicate variations in the CRI among brain tissue suffering from injury. CRI fluctuations correlated with alterations in the scattering and absorption coefficients of the injured tissue are demonstrated. This technique for deriving dynamic changes in the CRI of tissue may be further developed as a clinical diagnostic tool and for biomedical research applications. To the best of our knowledge, this is the first report of the estimation of the spectral CRI of a mouse head following injury obtained in the spatial frequency domain.

  16. Spatial structure of neuropeptide allatostatin-4

    International Nuclear Information System (INIS)

    Veliyeva, L.I.; Aliyev, E.Z.

    2011-01-01

    By method of conformational analysis there was determined the spatial structure of neuropeptide allatostatin-4 belonging to allatostatins family. On the basic of value of intramolecular conformational energy calculation was conducted quantitative assessment of the stability of molecule's possible conformational status in dipolar medium terms

  17. Stereological analysis of spatial structures

    DEFF Research Database (Denmark)

    Hansen, Linda Vadgård

    The thesis deals with stereological analysis of spatial structures. One area of focus has been to improve the precision of well-known stereological estimators by including information that is available via automatic image analysis. Furthermore, the thesis presents a stochastic model for star......-shaped three-dimensional objects using the radial function. It appears that the model is highly fleksiblel in the sense that it can be used to describe an object with arbitrary irregular surface. Results on the distribution of well-known local stereological volume estimators are provided....

  18. Gender Structure and Spatial Organization

    Directory of Open Access Journals (Sweden)

    Minoosh Sadoughianzadeh

    2013-11-01

    Full Text Available As a contribution to the widespread debate on the “gender reading” of the “built environment,” this article aims to situate the subject in a new context, the Iranian society. To depict the subject, two distinct traditional architectures of the region, associated with their respective socio-spatial organizations, have been comparatively explored: the “Introvert” and “Extrovert.” These two almost ageless “Introvert” and “Extrovert” architectures, evolved through centuries in different geographical parts of the country, are spatial patterns aptly illustrating how the “gender structure” of each social organization has contributed to the formation of the relevant “physical space” and, further, how the specific “gender relationships” are pertinently structured within each one of the two types of the spaces. Based on a systematic approach and through concentration on the macro-socio-spatial organization, this article is to explore the gender/space associated variations within either of the social systems they belong to. This perspective is particularly instrumental in pinpointing the Introvert and Extrovert architectures in the context of their social organizations and carefully scrutinizing “gender” and “space” categories as systematically integrated variables.

  19. Determination of the spatial structure of vegetation on the repository of the mine “Fryderyk” in Tarnowskie Góry, based on airborne laser scanning from the ISOK project and digital orthophotomaps

    Directory of Open Access Journals (Sweden)

    Szostak Marta

    2015-06-01

    Full Text Available The purpose of this study was to determine the spatial structure of vegetation on the repository of the mine “Fryderyk” in Tarnowskie Góry. Tested area was located in the Upper Silesian Industrial Region (a large industrial region in Poland. It was a unique refuge habitat – Natura2000; PLH240008. The main aspect of this elaboration was to investigate the possible use of geotechniques and generally available geodata for mapping LULC changes and determining the spatial structure of vegetation. The presented study focuses on the analysis of a spatial structure of vegetation in the research area. This exploration was based on aerial images and orthophotomaps from 1947, 1998, 2003, 2009, 2011 and airborne laser scanning data (2011, ISOK project. Forest succession changes which occurred between 1947 and 2011 were analysed. The selected features of vegetation overgrowing spoil heap “Fryderyk” was determined.

  20. Spatial-structural interaction and strain energy structural optimisation

    NARCIS (Netherlands)

    Hofmeyer, H.; Davila Delgado, J.M.; Borrmann, A.; Geyer, P.; Rafiq, Y.; Wilde, de P.

    2012-01-01

    A research engine iteratively transforms spatial designs into structural designs and vice versa. Furthermore, spatial and structural designs are optimised. It is suggested to optimise a structural design by evaluating the strain energy of its elements and by then removing, adding, or changing the

  1. Spatial Analysis Of Human Capital Structures

    Directory of Open Access Journals (Sweden)

    Gajdos Artur

    2014-12-01

    Full Text Available The main purpose of this paper is to analyse the interdependence between labour productivity and the occupational structure of human capital in a spatial cross-section. Research indicates (see Fischer 2009 the possibility to assess the impact of the quality of human capital (measured by means of the level of education on labour productivity in a spatial cross-section.

  2. Spatially variant periodic structures in electromagnetics

    Science.gov (United States)

    Rumpf, Raymond C.; Pazos, Javier J.; Digaum, Jennefir L.; Kuebler, Stephen M.

    2015-01-01

    Spatial transforms are a popular technique for designing periodic structures that are macroscopically inhomogeneous. The structures are often required to be anisotropic, provide a magnetic response, and to have extreme values for the constitutive parameters in Maxwell's equations. Metamaterials and photonic crystals are capable of providing these, although sometimes only approximately. The problem still remains about how to generate the geometry of the final lattice when it is functionally graded, or spatially varied. This paper describes a simple numerical technique to spatially vary any periodic structure while minimizing deformations to the unit cells that would weaken or destroy the electromagnetic properties. New developments in this algorithm are disclosed that increase efficiency, improve the quality of the lattices and provide the ability to design aplanatic metasurfaces. The ability to spatially vary a lattice in this manner enables new design paradigms that are not possible using spatial transforms, three of which are discussed here. First, spatially variant self-collimating photonic crystals are shown to flow unguided waves around very tight bends using ordinary materials with low refractive index. Second, multi-mode waveguides in spatially variant band gap materials are shown to guide waves around bends without mixing power between the modes. Third, spatially variant anisotropic materials are shown to sculpt the near-field around electric components. This can be used to improve electromagnetic compatibility between components in close proximity. PMID:26217058

  3. Determinants of capital structure.

    Science.gov (United States)

    McCue, M J; Ozcan, Y A

    1992-01-01

    This study analyzes the determinants of hospital capital structure in a new market setting that are created by the financial pressures of prospective payment and the intense price competition among hospitals. Using California data, the study found hospital system affiliation, bed size, growth rate in revenues, operating risk, and asset structure affected both short- and long-term debt borrowings. In addition, percentage of uncompensated care, profitability, and payer mix influenced short-term borrowings while market conditions and ownership affected long-term borrowings. Most significant of all is the finding that smaller hospitals tend to borrow more, possibly because they cannot generate funds internally.

  4. Exploring the Structure of Spatial Representations

    Science.gov (United States)

    Madl, Tamas; Franklin, Stan; Chen, Ke; Trappl, Robert; Montaldi, Daniela

    2016-01-01

    It has been suggested that the map-like representations that support human spatial memory are fragmented into sub-maps with local reference frames, rather than being unitary and global. However, the principles underlying the structure of these ‘cognitive maps’ are not well understood. We propose that the structure of the representations of navigation space arises from clustering within individual psychological spaces, i.e. from a process that groups together objects that are close in these spaces. Building on the ideas of representational geometry and similarity-based representations in cognitive science, we formulate methods for learning dissimilarity functions (metrics) characterizing participants’ psychological spaces. We show that these learned metrics, together with a probabilistic model of clustering based on the Bayesian cognition paradigm, allow prediction of participants’ cognitive map structures in advance. Apart from insights into spatial representation learning in human cognition, these methods could facilitate novel computational tools capable of using human-like spatial concepts. We also compare several features influencing spatial memory structure, including spatial distance, visual similarity and functional similarity, and report strong correlations between these dimensions and the grouping probability in participants’ spatial representations, providing further support for clustering in spatial memory. PMID:27347681

  5. Spatial structure determination of (√3 x √3)R30 degrees and (1.5 x 1.5)R18 degrees CO on Cu(111) using angle-resolved photoemission extended fine structure

    International Nuclear Information System (INIS)

    Moler, E.J.; Kellar, S.A.; Huff, W.R.A.

    1997-01-01

    The authors report a study of the spatial structure of (√3 x √3)R30 degrees (low coverage) and (1.5 x 1.5)R18 degrees (intermediate coverage) CO adsorbed on Cu(111), using the Angle-Resolved Photoemission Extended Fine Structure (ARPEFS) technique at beamline 9.3.2 at the Advanced Light Source. The CO molecule adsorbs on an atop site for both adsorption phases. Full multiple-scattering spherical-wave (MSSW) calculations were used to extract the C-Cu. bond length and the first Cu-Cu layer spacing for each adsorption phase. The authors find that the C-Cu bond length remains unchanged with increasing coverage, but the 1st Cu-Cu layer spacing contracts at the intermediate coverage. They calculate the bending mode force constant in the (1.5 x 1.5)R18 degrees phase to be K δ = 2.2 (1) x 10 -12 dyne-cm/rad from their experimentally determined bond lengths combined with previously published infra-red absorption frequencies

  6. Spatial structure determination of ({radical}3 x {radical}3)R30{degrees} and (1.5 x 1.5)R18{degrees}CO on Cu(111) using angle-resolved photoemission extended fine structure

    Energy Technology Data Exchange (ETDEWEB)

    Moler, E.J.; Kellar, S.A.; Huff, W.R.A. [Lawrence Berkeley National Lab., CA (United States)] [and others

    1997-04-01

    The authors report a study of the spatial structure of ({radical}3 x {radical}3)R30{degrees} (low coverage) and (1.5 x 1.5)R18{degrees} (intermediate coverage) CO adsorbed on Cu(111), using the Angle-Resolved Photoemission Extended Fine Structure (ARPEFS) technique at beamline 9.3.2 at the Advanced Light Source. The CO molecule adsorbs on an atop site for both adsorption phases. Full multiple-scattering spherical-wave (MSSW) calculations were used to extract the C-Cu. bond length and the first Cu-Cu layer spacing for each adsorption phase. The authors find that the C-Cu bond length remains unchanged with increasing coverage, but the 1st Cu-Cu layer spacing contracts at the intermediate coverage. They calculate the bending mode force constant in the (1.5 x 1.5)R18{degrees} phase to be K{sub {delta}} = 2.2 (1) x 10{sup {minus}12} dyne-cm/rad from their experimentally determined bond lengths combined with previously published infra-red absorption frequencies.

  7. Robustness Assessment of Spatial Timber Structures

    DEFF Research Database (Denmark)

    Kirkegaard, Poul Henning

    2012-01-01

    Robustness of structural systems has obtained a renewed interest due to a much more frequent use of advanced types of structures with limited redundancy and serious consequences in case of failure. In order to minimise the likelihood of such disproportionate structural failures many modern buildi...... to robustness of spatial timber structures and will discuss the consequences of such robustness issues related to the future development of timber structures.......Robustness of structural systems has obtained a renewed interest due to a much more frequent use of advanced types of structures with limited redundancy and serious consequences in case of failure. In order to minimise the likelihood of such disproportionate structural failures many modern building...... codes consider the need for robustness of structures and provide strategies and methods to obtain robustness. Therefore a structural engineer may take necessary steps to design robust structures that are insensitive to accidental circumstances. The present paper summaries issues with respect...

  8. Understanding the brain through its spatial structure

    Science.gov (United States)

    Morrison, Will Zachary

    The spatial location of cells in neural tissue can be easily extracted from many imaging modalities, but the information contained in spatial relationships between cells is seldom utilized. This is because of a lack of recognition of the importance of spatial relationships to some aspects of brain function, and the reflection in spatial statistics of other types of information. The mathematical tools necessary to describe spatial relationships are also unknown to many neuroscientists, and biologists in general. We analyze two cases, and show that spatial relationships can be used to understand the role of a particular type of cell, the astrocyte, in Alzheimer's disease, and that the geometry of axons in the brain's white matter sheds light on the process of establishing connectivity between areas of the brain. Astrocytes provide nutrients for neuronal metabolism, and regulate the chemical environment of the brain, activities that require manipulation of spatial distributions (of neurotransmitters, for example). We first show, through the use of a correlation function, that inter-astrocyte forces determine the size of independent regulatory domains in the cortex. By examining the spatial distribution of astrocytes in a mouse model of Alzheimer's Disease, we determine that astrocytes are not actively transported to fight the disease, as was previously thought. The paths axons take through the white matter determine which parts of the brain are connected, and how quickly signals are transmitted. The rules that determine these paths (i.e. shortest distance) are currently unknown. By measurement of axon orientation distributions using three-point correlation functions and the statistics of axon turning and branching, we reveal that axons are restricted to growth in three directions, like a taxicab traversing city blocks, albeit in three-dimensions. We show how geometric restrictions at the small scale are related to large-scale trajectories. Finally we discuss the

  9. Integrating spatial and numerical structure in mathematical patterning

    Science.gov (United States)

    Ni’mah, K.; Purwanto; Irawan, E. B.; Hidayanto, E.

    2018-03-01

    This paper reports a study monitoring the integrating spatial and numerical structure in mathematical patterning skills of 30 students grade 7th of junior high school. The purpose of this research is to clarify the processes by which learners construct new knowledge in mathematical patterning. Findings indicate that: (1) students are unable to organize the structure of spatial and numerical, (2) students were only able to organize the spatial structure, but the numerical structure is still incorrect, (3) students were only able to organize numerical structure, but its spatial structure is still incorrect, (4) students were able to organize both of the spatial and numerical structure.

  10. The spatial structure of transnational human activity.

    Science.gov (United States)

    Deutschmann, Emanuel

    2016-09-01

    Starting from conflictive predictions of hitherto disconnected debates in the natural and social sciences, this article examines the spatial structure of transnational human activity (THA) worldwide (a) across eight types of mobility and communication and (b) in its development over time. It is shown that the spatial structure of THA is similar to that of animal displacements and local-scale human motion in that it can be approximated by Lévy flights with heavy tails that obey power laws. Scaling exponent and power-law fit differ by type of THA, being highest in refuge-seeking and tourism and lowest in student exchange. Variance in the availability of resources and opportunities for satisfying associated needs appears to explain these differences. Over time (1960-2010), the Lévy-flight pattern remains intact and remarkably stable, contradicting the popular notion that socio-technological trends lead to a "death of distance." Humans have not become more "global" over time, they rather became more mobile in general, i.e. they move and communicate more at all distances. Hence, it would be more adequate to speak of "mobilization" than of "globalization." Longitudinal change occurs only in some types of THA and predominantly at short distances, indicating regional rather than global shifts. Copyright © 2016 Elsevier Inc. All rights reserved.

  11. Dropwise chains as the elements of water fog spatial structure

    International Nuclear Information System (INIS)

    Shavlov, A.V.; Sokolov, I.V.; Romanyuk, S.N.; Dzhumandzhi, V.A.

    2013-01-01

    Video images of water fog drops were acquired under standard atmospheric conditions with weak turbulence of the environment. Pair correlation functions of the drops were performed and traces of the spatial arrangement of the drops inside the fog determined. The fog structure carriers are the drop chains with a fixed interdroplet distance. The possible influence of the drop chains on the shear viscosity and fog surface tension has been analysed.

  12. Spatially modulated structural colour in bird feathers

    Science.gov (United States)

    Parnell, Andrew J.; Washington, Adam L.; Mykhaylyk, Oleksandr O.; Hill, Christopher J.; Bianco, Antonino; Burg, Stephanie L.; Dennison, Andrew J. C.; Snape, Mary; Cadby, Ashley J.; Smith, Andrew; Prevost, Sylvain; Whittaker, David M.; Jones, Richard A. L.; Fairclough, J. Patrick. A.; Parker, Andrew R.

    2015-12-01

    Eurasian Jay (Garrulus glandarius) feathers display periodic variations in the reflected colour from white through light blue, dark blue and black. We find the structures responsible for the colour are continuous in their size and spatially controlled by the degree of spinodal phase separation in the corresponding region of the feather barb. Blue structures have a well-defined broadband ultra-violet (UV) to blue wavelength distribution; the corresponding nanostructure has characteristic spinodal morphology with a lengthscale of order 150 nm. White regions have a larger 200 nm nanostructure, consistent with a spinodal process that has coarsened further, yielding broader wavelength white reflectance. Our analysis shows that nanostructure in single bird feather barbs can be varied continuously by controlling the time the keratin network is allowed to phase separate before mobility in the system is arrested. Dynamic scaling analysis of the single barb scattering data implies that the phase separation arrest mechanism is rapid and also distinct from the spinodal phase separation mechanism i.e. it is not gelation or intermolecular re-association. Any growing lengthscale using this spinodal phase separation approach must first traverse the UV and blue wavelength regions, growing the structure by coarsening, resulting in a broad distribution of domain sizes.

  13. Spatially modulated structural colour in bird feathers.

    Science.gov (United States)

    Parnell, Andrew J; Washington, Adam L; Mykhaylyk, Oleksandr O; Hill, Christopher J; Bianco, Antonino; Burg, Stephanie L; Dennison, Andrew J C; Snape, Mary; Cadby, Ashley J; Smith, Andrew; Prevost, Sylvain; Whittaker, David M; Jones, Richard A L; Fairclough, J Patrick A; Parker, Andrew R

    2015-12-21

    Eurasian Jay (Garrulus glandarius) feathers display periodic variations in the reflected colour from white through light blue, dark blue and black. We find the structures responsible for the colour are continuous in their size and spatially controlled by the degree of spinodal phase separation in the corresponding region of the feather barb. Blue structures have a well-defined broadband ultra-violet (UV) to blue wavelength distribution; the corresponding nanostructure has characteristic spinodal morphology with a lengthscale of order 150 nm. White regions have a larger 200 nm nanostructure, consistent with a spinodal process that has coarsened further, yielding broader wavelength white reflectance. Our analysis shows that nanostructure in single bird feather barbs can be varied continuously by controlling the time the keratin network is allowed to phase separate before mobility in the system is arrested. Dynamic scaling analysis of the single barb scattering data implies that the phase separation arrest mechanism is rapid and also distinct from the spinodal phase separation mechanism i.e. it is not gelation or intermolecular re-association. Any growing lengthscale using this spinodal phase separation approach must first traverse the UV and blue wavelength regions, growing the structure by coarsening, resulting in a broad distribution of domain sizes.

  14. State determination for composite systems of two spatial qubits

    International Nuclear Information System (INIS)

    Lima, G; Torres-Ruiz, F A; Neves, L; Delgado, A; Saavedra, C; Padua, S

    2007-01-01

    In a recent letter [Phys. Rev. Lett. 94, 100501 (2005)], we presented a scheme for generating pure entangled states of spatial qudits using transverse correlations of parametric down-converted photons. Here we show how the modication of this scheme can be used to generate mixed states and we investigate the state determination for composite systems of two spatial qubits, motivated by the fact that quantum information protocols may be easier to be implemented for this case. By means of local operations on the twin photons we were able to perform the quantum tomography process to reconstruct the density matrix of a mixed state of two spatial qubits

  15. Birthday Cake Activity Structured Arrangement for Helping Children Determining Quantities

    Science.gov (United States)

    Mariana, Neni

    2010-01-01

    Few researches have been concerned about relation between children's spatial thinking and number sense. Narrowing for this small research, we focused on one component of spatial thinking, that is structuring objects, and one component of number senses, that is cardinality by determining quantities. This study focused on a design research that was…

  16. Crystal structure determination of Efavirenz

    International Nuclear Information System (INIS)

    Popeneciu, Horea; Dumitru, Ristoiu; Tripon, Carmen; Borodi, Gheorghe; Pop, Mihaela Maria

    2015-01-01

    Needle-shaped single crystals of the title compound, C 14 H 9 ClF 3 NO 2 , were obtained from a co-crystallization experiment of Efavirenz with maleic acid in a (1:1) ratio, using methanol as solvent. Crystal structure determination at room temperature revealed a significant anisotropy of the lattice expansion compared to the previously reported low-temperature structure. In both low- and room temperature structures the cyclopropylethynyl fragment in one of the asymmetric unit molecules is disordered. While at low-temperature only one C atom exhibits positional disorder, at room temperature the disorder is present for two C atoms of the cyclopropane ring

  17. Structural determination of organic compounds

    International Nuclear Information System (INIS)

    Kintzinger, J.P.

    1991-01-01

    This paper reports that the current methods available in high-field NMR spectroscopy are such that the tridimensional structure determination of any rigid molecule containing only carbon and hydrogen atoms may be achieved. The connectivities between carbon-carbon, carbon-hydrogen, and hydrogen-hydrogen atoms are determined by multipulse and two-dimensional (2D) experiments. These connectivity patterns or maps allow a step-by-step reconstruction of the molecular structures. From the carbon-carbon connectivity map, the carbon framework of the molecule is obtained, whereas the carbon-hydrogen pattern allows determination of the positions of the hydrogen atoms on their corresponding carbon atoms. High-field spectrometers are then necessary to remove fortuitous degeneracy and to reduce the proton spectra to a nearly first-order one, allowing an easy measurement of the chemical shifts and the coupling constants

  18. Automated simulation and study of spatial-structural design processes

    NARCIS (Netherlands)

    Davila Delgado, J.M.; Hofmeyer, H.; Stouffs, R.; Sariyildiz, S.

    2013-01-01

    A so-called "Design Process Investigation toolbox" (DPI toolbox), has been developed. It is a set of computational tools that simulate spatial-structural design processes. Its objectives are to study spatial-structural design processes and to support the involved actors. Two case-studies are

  19. Young children's spatial structuring ability and emerging number sense

    NARCIS (Netherlands)

    van Nes, F.T.

    2009-01-01

    This thesis documents research into the role of young children’s spatial structuring ability in the development of number sense, particularly in terms of insight into numerical relations. We take Battista and Clements’ (1996, p. 503) definition to define the act of spatial structuring as “the mental

  20. Book Review. Mapping the determinants of spatial data sharing By ...

    African Journals Online (AJOL)

    Book Review. Mapping the determinants of spatial data sharing. By Uta Wehn de Montalvo (2003). Yoichi Mine. Abstract. Aldershot: Ashgate. Africa Development Vol. XXX(3) 2005: 145-146. http://dx.doi.org/10.4314/ad.v30i3.22237 · AJOL African Journals Online. HOW TO USE AJOL... for Researchers · for Librarians ...

  1. Spatial Pattern Determination of Biodiversity Threats at Landscape Level (Case Study: Golestan Province)

    OpenAIRE

    R. Mirzaei; A. Esmaili-Sari; M. R. Hemami; H. R. Rezaei

    2015-01-01

    Mapping spatial patterns of potential biodiversity threats is one of the important steps for effective conservation planning and activities. To determine the spatial patterns of threats in Golestan province, 12 criteria in four main groups including structural (fractal coefficient of perimeter, circularity ratio of area, average slope), compositional aspects of biodiversity (presence of species at risk), non-biological threats (distance to city, distance to village, distance to road, distance...

  2. SPATIAL STRUCTURE OF WATERFRONT CITIES: COMPARISSON BETWEEN KENDARI AND MANADO

    Directory of Open Access Journals (Sweden)

    Slamet Trisutomo

    2016-01-01

    Full Text Available As an archipelagic country, many cities in Indonesia exist and grow at the waterfronts. This research aims to explore comparatively the spatial structure of two waterfront cities: Kendari represents a bay-front with U-form coast line, and Manado as a sea-front with straight line coast line. The spatial structures are represented by spatial pattern, land use pattern, population density, road network, BCR and urban hierarchy. Data were collected through field survey, reading government documents and doing in-depth interview of some key informants. Descriptive and comparative analyses - both similarities and differences - on spatial structures were focused on the relationships between spatial structures with the existence of the waterfronts. The findings show that at the early period of growth, spatial structures of both cities were formed by the existence of the waterfront similarly. Influenced by physical development such as commercial facilities and housing settlements, the spatial structure recently spreads out to the mainland area created some new sub-centers. Understanding the character of spatial structures will be significant for directing and controlling the urban land use to create a sustainable waterfront city.

  3. Structure determination of enterovirus 71

    Energy Technology Data Exchange (ETDEWEB)

    Plevka, Pavel; Perera, Rushika; Cardosa, Jane; Kuhn, Richard J.; Rossmann, Michael G. (Purdue); (Sentinext)

    2013-02-20

    Enterovirus 71 is a picornavirus that causes hand, foot and mouth disease but may induce fatal neurological illness in infants and young children. Enterovirus 71 crystallized in a body-centered orthorhombic space group with two particles in general orientations in the crystallographic asymmetric unit. Determination of the particle orientations required that the locked rotation function excluded the twofold symmetry axes from the set of icosahedral symmetry operators. This avoided the occurrence of misleading high rotation-function values produced by the alignment of icosahedral and crystallographic twofold axes. Once the orientations and positions of the particles had been established, the structure was solved by molecular replacement and phase extension.

  4. Structures and properties of spatially distorted porphyrins

    International Nuclear Information System (INIS)

    Golubchikov, Oleg A; Kuvshinova, Elizaveta M; Pukhovskaya, Svetlana G

    2005-01-01

    The published data on the structures and properties of porphyrins with distorted aromatic macrocycles are generalised and analysed. Data on the crystal structures, spectra and kinetics of formation and dissociation of their coordination derivatives are summarised. It is demonstrated that the distortion of the planar structure of the tetrapyrrole core is one of the most efficient means of controlling spectral, physicochemical and coordination properties of these compounds.

  5. China’s Energy Intensity, Determinants and Spatial Effects

    Directory of Open Access Journals (Sweden)

    Lei Jiang

    2016-06-01

    Full Text Available In the shadow of the energy crisis and environmental degradation, energy intensity is a hot topic in academic circles in China. The energy intensity distribution map of China indicates the fairly large geographic disparities globally and clustering locally in some areas, ascending from the southeast regions to the northwest provinces. Although energy intensity and its determinants vary from place to place, few studies have been made from the spatial perspective. Determinates of energy intensity and spatial spillover effects should be taken into consideration. Controlling for seven exogenous variables (per capita GDP; the share of the secondary sector; foreign direct investment; international trade, energy price, the share of coal, and transport sector and their spatial lags, we apply a spatial Durbin model to test for spatial spillover effects among energy intensity and exogenous variables from a panel of 29 Chinese provinces over 1998 to 2014. We find that per capita GDP has an insignificant and negative direct and indirect effect, but has a significant and negative total effect on energy intensity. The share of the secondary sector and the share of coal are found to have significant and positive direct and indirect effects on energy intensity. Foreign Direct Investment (FDI and Trade have significant and negative direct and indirect effects on energy intensity. The direct effect of energy price is found to be significantly positive while the indirect effect is negative. Only the direct effect of the Transport variable is significant and positive. The results of this study offer some theoretical evidence for differential localized policy making related to reduction in energy intensity.

  6. Toward Accessing Spatial Structure from Building Information Models

    Science.gov (United States)

    Schultz, C.; Bhatt, M.

    2011-08-01

    Data about building designs and layouts is becoming increasingly more readily available. In the near future, service personal (such as maintenance staff or emergency rescue workers) arriving at a building site will have immediate real-time access to enormous amounts of data relating to structural properties, utilities, materials, temperature, and so on. The critical problem for users is the taxing and error prone task of interpreting such a large body of facts in order to extract salient information. This is necessary for comprehending a situation and deciding on a plan of action, and is a particularly serious issue in time-critical and safety-critical activities such as firefighting. Current unifying building models such as the Industry Foundation Classes (IFC), while being comprehensive, do not directly provide data structures that focus on spatial reasoning and spatial modalities that are required for high-level analytical tasks. The aim of the research presented in this paper is to provide computational tools for higher level querying and reasoning that shift the cognitive burden of dealing with enormous amounts of data away from the user. The user can then spend more energy and time in planning and decision making in order to accomplish the tasks at hand. We present an overview of our framework that provides users with an enhanced model of "built-up space". In order to test our approach using realistic design data (in terms of both scale and the nature of the building models) we describe how our system interfaces with IFC, and we conduct timing experiments to determine the practicality of our approach. We discuss general computational approaches for deriving higher-level spatial modalities by focusing on the example of route graphs. Finally, we present a firefighting scenario with alternative route graphs to motivate the application of our framework.

  7. The Nature of Tectonic Spatial Structures

    DEFF Research Database (Denmark)

    Carter, Adrian; Kirkegaard, Poul Henning

    2010-01-01

    Since earliest times mankind has sought inspiration from nature for our built structures. However until the dawn of the modern era in architecture and design, the true structural character of a building was invariably full y or partially encased in an ornamented cladding, of often stylised motifs...... particularly of Kenneth Frampton, this paper will argue that the direct inspiration of nature and the increasing use of advanced parametric digital design tools that replicate virtually instantaneously evolutionary processes results in structures that are not only elegant tectonically and in terms of economy...

  8. Spatial Structures and Regulation in Biological Systems

    DEFF Research Database (Denmark)

    Yde, Pernille

    , and the other is the spatial regulation of biological systems, here related to different aspects of the inflammatory response. All systems are studied using computational modelling and mathematical analysis. The first part of the thesis explores different protein aggregation scenarios. In Chapter 1, we consider...... a previously studied and very general aggregation model describing frangible linear filaments. This model is especially relevant for the growth of amyloid fibres, that have been related to a number of serious human diseases, and which are known to grow in an accelerated self-enhanced manner.We derive...... model of the tissue and show how coupled cells are able to function as an excitable medium and propagate waves of high cytokine concentration through the tissue. If the internal regulation in the cells is over-productive, the model predicts a continuous amplification of cytokines, which spans the entire...

  9. Determination and optimization of spatial samples for distributed measurements.

    Energy Technology Data Exchange (ETDEWEB)

    Huo, Xiaoming (Georgia Institute of Technology, Atlanta, GA); Tran, Hy D.; Shilling, Katherine Meghan; Kim, Heeyong (Georgia Institute of Technology, Atlanta, GA)

    2010-10-01

    There are no accepted standards for determining how many measurements to take during part inspection or where to take them, or for assessing confidence in the evaluation of acceptance based on these measurements. The goal of this work was to develop a standard method for determining the number of measurements, together with the spatial distribution of measurements and the associated risks for false acceptance and false rejection. Two paths have been taken to create a standard method for selecting sampling points. A wavelet-based model has been developed to select measurement points and to determine confidence in the measurement after the points are taken. An adaptive sampling strategy has been studied to determine implementation feasibility on commercial measurement equipment. Results using both real and simulated data are presented for each of the paths.

  10. Spatial structure arising from neighbour-dependent bias in collective cell movement

    Directory of Open Access Journals (Sweden)

    Rachelle N. Binny

    2016-02-01

    Full Text Available Mathematical models of collective cell movement often neglect the effects of spatial structure, such as clustering, on the population dynamics. Typically, they assume that individuals interact with one another in proportion to their average density (the mean-field assumption which means that cell–cell interactions occurring over short spatial ranges are not accounted for. However, in vitro cell culture studies have shown that spatial correlations can play an important role in determining collective behaviour. Here, we take a combined experimental and modelling approach to explore how individual-level interactions give rise to spatial structure in a moving cell population. Using imaging data from in vitro experiments, we quantify the extent of spatial structure in a population of 3T3 fibroblast cells. To understand how this spatial structure arises, we develop a lattice-free individual-based model (IBM and simulate cell movement in two spatial dimensions. Our model allows an individual’s direction of movement to be affected by interactions with other cells in its neighbourhood, providing insights into how directional bias generates spatial structure. We consider how this behaviour scales up to the population level by using the IBM to derive a continuum description in terms of the dynamics of spatial moments. In particular, we account for spatial correlations between cells by considering dynamics of the second spatial moment (the average density of pairs of cells. Our numerical results suggest that the moment dynamics description can provide a good approximation to averaged simulation results from the underlying IBM. Using our in vitro data, we estimate parameters for the model and show that it can generate similar spatial structure to that observed in a 3T3 fibroblast cell population.

  11. Spatial structure arising from neighbour-dependent bias in collective cell movement.

    Science.gov (United States)

    Binny, Rachelle N; Haridas, Parvathi; James, Alex; Law, Richard; Simpson, Matthew J; Plank, Michael J

    2016-01-01

    Mathematical models of collective cell movement often neglect the effects of spatial structure, such as clustering, on the population dynamics. Typically, they assume that individuals interact with one another in proportion to their average density (the mean-field assumption) which means that cell-cell interactions occurring over short spatial ranges are not accounted for. However, in vitro cell culture studies have shown that spatial correlations can play an important role in determining collective behaviour. Here, we take a combined experimental and modelling approach to explore how individual-level interactions give rise to spatial structure in a moving cell population. Using imaging data from in vitro experiments, we quantify the extent of spatial structure in a population of 3T3 fibroblast cells. To understand how this spatial structure arises, we develop a lattice-free individual-based model (IBM) and simulate cell movement in two spatial dimensions. Our model allows an individual's direction of movement to be affected by interactions with other cells in its neighbourhood, providing insights into how directional bias generates spatial structure. We consider how this behaviour scales up to the population level by using the IBM to derive a continuum description in terms of the dynamics of spatial moments. In particular, we account for spatial correlations between cells by considering dynamics of the second spatial moment (the average density of pairs of cells). Our numerical results suggest that the moment dynamics description can provide a good approximation to averaged simulation results from the underlying IBM. Using our in vitro data, we estimate parameters for the model and show that it can generate similar spatial structure to that observed in a 3T3 fibroblast cell population.

  12. Forensic steganalysis: determining the stego key in spatial domain steganography

    Science.gov (United States)

    Fridrich, Jessica; Goljan, Miroslav; Soukal, David; Holotyak, Taras

    2005-03-01

    This paper is an extension of our work on stego key search for JPEG images published at EI SPIE in 2004. We provide a more general theoretical description of the methodology, apply our approach to the spatial domain, and add a method that determines the stego key from multiple images. We show that in the spatial domain the stego key search can be made significantly more efficient by working with the noise component of the image obtained using a denoising filter. The technique is tested on the LSB embedding paradigm and on a special case of embedding by noise adding (the +/-1 embedding). The stego key search can be performed for a wide class of steganographic techniques even for sizes of secret message well below those detectable using known methods. The proposed strategy may prove useful to forensic analysts and law enforcement.

  13. Determination Of Slope Instability Using Spatially Integrated Mapping Framework

    Science.gov (United States)

    Baharuddin, I. N. Z.; Omar, R. C.; Roslan, R.; Khalid, N. H. N.; Hanifah, M. I. M.

    2016-11-01

    The determination and identification of slope instability are often rely on data obtained from in-situ soil investigation work where it involves the logistic of machineries and manpower, thus these aspects may increase the cost especially for remote locations. Therefore a method, which is able to identify possible slope instability without frequent ground walkabout survey, is needed. This paper presents the method used in prediction of slope instability using spatial integrated mapping framework which applicable for remote areas such as tropical forest and natural hilly terrain. Spatial data such as geology, topography, land use map, slope angle and elevation were used in regional analysis during desktop study. Through this framework, the occurrence of slope instability was able to be identified and was validate using a confirmatory site- specific analysis.

  14. Spatially varying determinants of farmland conversion across Qiantang watershed, China.

    Science.gov (United States)

    Su, Shiliang; Xiao, Rui

    2013-10-01

    This paper employed geographically weighted regression (GWR) to characterize the determinants of farmland conversion at administrative scale between 1994 and 2003 across Qiantang watershed, China. Six determinants were identified: total area of forest, distance to highway, distance to second road, distance to river, population, and gross domestic product. Relationships between these identified determinants and farmland conversion showed great spatial non-stationarity, since their character, nature, and strength varied significantly across space. Typically, for cities whose development was heavily relied on road infrastructure development, the impacts of "distance to second road" and "distance to river" was negative. However, in mountainous areas, the restriction of terrain factors led to positive impacts from these two variables. For areas undergoing rapid socio-economic development, farmland conversion was accelerated by population growth and economic development. However, for more urbanized regions, a slow-down rate of farmland conversion would be expected. Our study highlighted that the problem of spatial non-stationarity should be addressed when qualifying the determinants of farmland conversion. Linking our results within the context of farmland protection, we argue that implementing local-specific land management practices, instead of the current one-size-fits-all framework, is the key for the success of farmland protection in China.

  15. Modeling structural change in spatial system dynamics: A Daisyworld example.

    Science.gov (United States)

    Neuwirth, C; Peck, A; Simonović, S P

    2015-03-01

    System dynamics (SD) is an effective approach for helping reveal the temporal behavior of complex systems. Although there have been recent developments in expanding SD to include systems' spatial dependencies, most applications have been restricted to the simulation of diffusion processes; this is especially true for models on structural change (e.g. LULC modeling). To address this shortcoming, a Python program is proposed to tightly couple SD software to a Geographic Information System (GIS). The approach provides the required capacities for handling bidirectional and synchronized interactions of operations between SD and GIS. In order to illustrate the concept and the techniques proposed for simulating structural changes, a fictitious environment called Daisyworld has been recreated in a spatial system dynamics (SSD) environment. The comparison of spatial and non-spatial simulations emphasizes the importance of considering spatio-temporal feedbacks. Finally, practical applications of structural change models in agriculture and disaster management are proposed.

  16. Measurement of turbulent spatial structure and kinetic energy spectrum by exact temporal-to-spatial mapping

    DEFF Research Database (Denmark)

    Buchhave, Preben; Velte, Clara Marika

    2017-01-01

    distortions caused by Taylor’s hypothesis. The method is first confirmed to produce the correct statistics using computer simulations and later applied to measurements in some of the most difficult regions of a round turbulent jet—the non-equilibrium developing region and the outermost parts of the developed......We present a method for converting a time record of turbulent velocity measured at a point in a flow to a spatial velocity record consisting of consecutive convection elements. The spatial record allows computation of dynamic statistical moments such as turbulent kinetic wavenumber spectra...... and spatial structure functions in a way that completely bypasses the need for Taylor’s hypothesis. The spatial statistics agree with the classical counterparts, such as the total kinetic energy spectrum, at least for spatial extents up to the Taylor microscale. The requirements for applying the method...

  17. Spatial network surrogates for disentangling complex system structure from spatial embedding of nodes

    Science.gov (United States)

    Wiedermann, Marc; Donges, Jonathan F.; Kurths, Jürgen; Donner, Reik V.

    2016-04-01

    Networks with nodes embedded in a metric space have gained increasing interest in recent years. The effects of spatial embedding on the networks' structural characteristics, however, are rarely taken into account when studying their macroscopic properties. Here, we propose a hierarchy of null models to generate random surrogates from a given spatially embedded network that can preserve certain global and local statistics associated with the nodes' embedding in a metric space. Comparing the original network's and the resulting surrogates' global characteristics allows one to quantify to what extent these characteristics are already predetermined by the spatial embedding of the nodes and links. We apply our framework to various real-world spatial networks and show that the proposed models capture macroscopic properties of the networks under study much better than standard random network models that do not account for the nodes' spatial embedding. Depending on the actual performance of the proposed null models, the networks are categorized into different classes. Since many real-world complex networks are in fact spatial networks, the proposed approach is relevant for disentangling the underlying complex system structure from spatial embedding of nodes in many fields, ranging from social systems over infrastructure and neurophysiology to climatology.

  18. Effect of long-term mechanical perturbation on intertidal soft-bottom meiofaunal community spatial structure

    Science.gov (United States)

    Boldina, Inna; Beninger, Peter G.; Le Coz, Maïwen

    2014-01-01

    Situated at the interface of the microbial and macrofaunal compartments, soft-bottom meiofauna accomplish important ecological functions. However, little is known of their spatial distribution in the benthic environment. To assess the effects of long-term mechanical disturbance on soft-bottom meiofaunal spatial distribution, we compared a site subjected to long-term clam digging to a nearby site untouched by such activities, in Bourgneuf Bay, on the Atlantic coast of France. Six patterned replicate samples were taken at 3, 6, 9, 12, 15, 18, 21 and 24 cm lags, all sampling stations being separated by 5 m. A combined correlogram-variogram approach was used to enhance interpretation of the meiofaunal spatial distribution; in particular, the definition of autocorrelation strength and its statistical significance, as well as the detailed characteristics of the periodic spatial structure of nematode assemblages, and the determination of the maximum distance of their spatial autocorrelation. At both sites, nematodes and copepods clearly exhibited aggregated spatial structure at the meso scale; this structure was attenuated at the impacted site. The nematode spatial distribution showed periodicity at the non-impacted site, but not at the impacted site. This is the first explicit report of a periodic process in meiofaunal spatial distribution. No such cyclic spatial process was observed for the more motile copepods at either site. This first study to indicate the impacts of long-term anthropogenic mechanical perturbation on meiofaunal spatial structure opens the door to a new dimension of mudflat ecology. Since macrofaunal predator search behaviour is known to be strongly influenced by prey spatial structure, the alteration of this structure may have important consequences for ecosystem functioning.

  19. Coevolutionary and genetic algorithm based building spatial and structural design

    NARCIS (Netherlands)

    Hofmeyer, H.; Davila Delgado, J.M.

    2015-01-01

    In this article, two methods to develop and optimize accompanying building spatial and structural designs are compared. The first, a coevolutionary method, applies deterministic procedures, inspired by realistic design processes, to cyclically add a suitable structural design to the input of a

  20. Spatially ordered structures in storm clouds and fogs

    International Nuclear Information System (INIS)

    Shavlov, A.V.; Dzhumandzhi, V.A.

    2010-01-01

    The article shows the possibility of formation of the spatially ordered structures by the charged drops of water in both storm clouds and fogs. To predict the existence of the given structures there was proposed a model of interaction mechanism among the charged particles. We also estimated the influence of drop ordering onto the surface tension and the shear viscosity in clouds.

  1. Multilayer networks reveal the spatial structure of seed-dispersal interactions across the Great Rift landscapes.

    Science.gov (United States)

    Timóteo, Sérgio; Correia, Marta; Rodríguez-Echeverría, Susana; Freitas, Helena; Heleno, Ruben

    2018-01-10

    Species interaction networks are traditionally explored as discrete entities with well-defined spatial borders, an oversimplification likely impairing their applicability. Using a multilayer network approach, explicitly accounting for inter-habitat connectivity, we investigate the spatial structure of seed-dispersal networks across the Gorongosa National Park, Mozambique. We show that the overall seed-dispersal network is composed by spatially explicit communities of dispersers spanning across habitats, functionally linking the landscape mosaic. Inter-habitat connectivity determines spatial structure, which cannot be accurately described with standard monolayer approaches either splitting or merging habitats. Multilayer modularity cannot be predicted by null models randomizing either interactions within each habitat or those linking habitats; however, as habitat connectivity increases, random processes become more important for overall structure. The importance of dispersers for the overall network structure is captured by multilayer versatility but not by standard metrics. Highly versatile species disperse many plant species across multiple habitats, being critical to landscape functional cohesion.

  2. Near-Infrared Spatially Resolved Spectroscopy for Tablet Quality Determination.

    Science.gov (United States)

    Igne, Benoît; Talwar, Sameer; Feng, Hanzhou; Drennen, James K; Anderson, Carl A

    2015-12-01

    Near-infrared (NIR) spectroscopy has become a well-established tool for the characterization of solid oral dosage forms manufacturing processes and finished products. In this work, the utility of a traditional single-point NIR measurement was compared with that of a spatially resolved spectroscopic (SRS) measurement for the determination of tablet assay. Experimental designs were used to create samples that allowed for calibration models to be developed and tested on both instruments. Samples possessing a poor distribution of ingredients (highly heterogeneous) were prepared by under-blending constituents prior to compaction to compare the analytical capabilities of the two NIR methods. The results indicate that SRS can provide spatial information that is usually obtainable only through imaging experiments for the determination of local heterogeneity and detection of abnormal tablets that would not be detected with single-point spectroscopy, thus complementing traditional NIR measurement systems for in-line, and in real-time tablet analysis. © 2015 Wiley Periodicals, Inc. and the American Pharmacists Association.

  3. Structured illumination to spatially map chromatin motions.

    Science.gov (United States)

    Bonin, Keith; Smelser, Amanda; Moreno, Naike Salvador; Holzwarth, George; Wang, Kevin; Levy, Preston; Vidi, Pierre-Alexandre

    2018-05-01

    We describe a simple optical method that creates structured illumination of a photoactivatable probe and apply this method to characterize chromatin motions in nuclei of live cells. A laser beam coupled to a diffractive optical element at the back focal plane of an excitation objective generates an array of near diffraction-limited beamlets with FWHM of 340  ±  30  nm, which simultaneously photoactivate a 7  ×  7 matrix pattern of GFP-labeled histones, with spots 1.70  μm apart. From the movements of the photoactivated spots, we map chromatin diffusion coefficients at multiple microdomains of the cell nucleus. The results show correlated motions of nearest chromatin microdomain neighbors, whereas chromatin movements are uncorrelated at the global scale of the nucleus. The method also reveals a DNA damage-dependent decrease in chromatin diffusion. The diffractive optical element instrumentation can be easily and cheaply implemented on commercial inverted fluorescence microscopes to analyze adherent cell culture models. A protocol to measure chromatin motions in nonadherent human hematopoietic stem and progenitor cells is also described. We anticipate that the method will contribute to the identification of the mechanisms regulating chromatin mobility, which influences most genomic processes and may underlie the biogenesis of genomic translocations associated with hematologic malignancies. (2018) COPYRIGHT Society of Photo-Optical Instrumentation Engineers (SPIE).

  4. A Versatile and Efficient GPU Data Structure for Spatial Indexing

    KAUST Repository

    Schneider, Jens

    2016-08-10

    In this paper we present a novel GPU-based data structure for spatial indexing. Based on Fenwick trees—a special type of binary indexed trees—our data structure allows construction in linear time. Updates and prefixes can be computed in logarithmic time, whereas point queries require only constant time on average. Unlike competing data structures such as summed-area tables and spatial hashing, our data structure requires a constant amount of bits for each data element, and it offers unconstrained point queries. This property makes our data structure ideally suited for applications requiring unconstrained indexing of large data, such as block-storage of large and block-sparse volumes. Finally, we provide asymptotic bounds on both run-time and memory requirements, and we show applications for which our new data structure is useful.

  5. A Versatile and Efficient GPU Data Structure for Spatial Indexing

    KAUST Repository

    Schneider, Jens; Rautek, Peter

    2016-01-01

    In this paper we present a novel GPU-based data structure for spatial indexing. Based on Fenwick trees—a special type of binary indexed trees—our data structure allows construction in linear time. Updates and prefixes can be computed in logarithmic time, whereas point queries require only constant time on average. Unlike competing data structures such as summed-area tables and spatial hashing, our data structure requires a constant amount of bits for each data element, and it offers unconstrained point queries. This property makes our data structure ideally suited for applications requiring unconstrained indexing of large data, such as block-storage of large and block-sparse volumes. Finally, we provide asymptotic bounds on both run-time and memory requirements, and we show applications for which our new data structure is useful.

  6. Topologically determined optimal stochastic resonance responses of spatially embedded networks

    International Nuclear Information System (INIS)

    Gosak, Marko; Marhl, Marko; Korosak, Dean

    2011-01-01

    We have analyzed the stochastic resonance phenomenon on spatial networks of bistable and excitable oscillators, which are connected according to their location and the amplitude of external forcing. By smoothly altering the network topology from a scale-free (SF) network with dominating long-range connections to a network where principally only adjacent oscillators are connected, we reveal that besides an optimal noise intensity, there is also a most favorable interaction topology at which the best correlation between the response of the network and the imposed weak external forcing is achieved. For various distributions of the amplitudes of external forcing, the optimal topology is always found in the intermediate regime between the highly heterogeneous SF network and the strong geometric regime. Our findings thus indicate that a suitable number of hubs and with that an optimal ratio between short- and long-range connections is necessary in order to obtain the best global response of a spatial network. Furthermore, we link the existence of the optimal interaction topology to a critical point indicating the transition from a long-range interactions-dominated network to a more lattice-like network structure.

  7. Spatial structure of extensive air showers near the axis

    Energy Technology Data Exchange (ETDEWEB)

    Alekseev, E N; Gal' perin, M D; Glemba, P Ya [AN SSSR, Moscow. Inst. Yadernykh Issledovanij; Moskovskij Gosudarstvennyj Univ. (USSR). Nauchno-Issledovatel' skij Inst. Yadernoj Fiziki; Consiglio Nazionale delle Ricerche, Turin (Italy). Lab. di Cosmo-Geofisica)

    1978-07-01

    The spatial structure of the extensive air showers has been investigated. The tests have been staged on the 400 scintillation counter installation. It has been shown, that spatial distribution of the extensive air showers in the vicinity of the axis does not vary in case of the Nsub(e) electron number showers in the 10/sup 5/-10/sup 6/ range. The share of the showers having a clear-cut multicore structure is approximately 3% with Nsub(e) >= 2x10/sup 5/.

  8. A spatial structural derivative model for ultraslow diffusion

    Directory of Open Access Journals (Sweden)

    Xu Wei

    2017-01-01

    Full Text Available This study investigates the ultraslow diffusion by a spatial structural derivative, in which the exponential function ex is selected as the structural function to construct the local structural derivative diffusion equation model. The analytical solution of the diffusion equation is a form of Biexponential distribution. Its corresponding mean squared displacement is numerically calculated, and increases more slowly than the logarithmic function of time. The local structural derivative diffusion equation with the structural function ex in space is an alternative physical and mathematical modeling model to characterize a kind of ultraslow diffusion.

  9. Spatial temporal determination of phosphorus concentration in Lake Tota

    International Nuclear Information System (INIS)

    Cordero, Ruben D; Ruiz, J Efraim; Vargas, Edgar F

    2005-01-01

    The lapse from July to November of 2003 a study was made to determine the spatial and temporal concentration of phosphorus in the lake of Tota (Boyaca, Colombia). Samples were taken with a Van-Dorn bottle of the horizontal type of two-liter capacity in the superficial stratum up to 20 cm in the water column and at 10 m depth. The different forms of phosphorus studied, show that there are significant differences in their concentrations, the highest values being found in the sector known as Lago Chico and the lowest in the area of Lago Grande; this behavior is found to be closely related to the agricultural uses of the land in the littoral zone and additionally with the climatic factors especially the precipitation in the area investigated

  10. Solution NMR structure determination of proteins revisited

    International Nuclear Information System (INIS)

    Billeter, Martin; Wagner, Gerhard; Wuethrich, Kurt

    2008-01-01

    This 'Perspective' bears on the present state of protein structure determination by NMR in solution. The focus is on a comparison of the infrastructure available for NMR structure determination when compared to protein crystal structure determination by X-ray diffraction. The main conclusion emerges that the unique potential of NMR to generate high resolution data also on dynamics, interactions and conformational equilibria has contributed to a lack of standard procedures for structure determination which would be readily amenable to improved efficiency by automation. To spark renewed discussion on the topic of NMR structure determination of proteins, procedural steps with high potential for improvement are identified

  11. Birthday Cake Activity Structured Arrangement for Helping Children Determining Quantities

    Directory of Open Access Journals (Sweden)

    Neni Mariana

    2010-07-01

    Full Text Available Few researches have been concerned about relation between children’s spatial thinking and number sense. Narrowing for this small research, we focused on one component of spatial thinking, that is structuring objects, and one component of number senses, that is cardinality by determining quantities. This study focused on a design research that was conducted in Indonesia in which we investigated pre-school children’s (between 2 and 3.5 years old ability in making structured arrangement and their ability to determine the quantities by looking at the arrangements. The result shows us that some of the children were able to make such arrangement. However, the children found difficulties either to determine quantities from those arrangements or to compare some structures to easily recognize number of objects.

  12. Villes et structures spatiales élémentaires du KwaZulu-Natal

    Directory of Open Access Journals (Sweden)

    Fabrice Folio

    2004-12-01

    Full Text Available However significant the legacy of former segregational policies in the spatial organisation of South African cities, it is important to include other basic spatial structures that have often been minimised. That is the aim of this paper. The towns in KwaZulu-Natal province provide a strong illustration of this point. The urban entities in the province can be differentiated by several criteria – either historical or contemporary – that are not always related to apartheid policy. The towns are underpinned by basic structures that organise the province. These structures are determined not only by racial discrimination, but also by economics. Recent developments seem to reinforce this trend.

  13. Spatial structure increases the waiting time for cancer

    Science.gov (United States)

    Martens, Erik A.; Kostadinov, Rumen; Maley, Carlo C.; Hallatschek, Oskar

    2011-11-01

    Cancer results from a sequence of genetic and epigenetic changes that lead to a variety of abnormal phenotypes including increased proliferation and survival of somatic cells and thus to a selective advantage of pre-cancerous cells. The notion of cancer progression as an evolutionary process has been attracting increasing interest in recent years. A great deal of effort has been made to better understand and predict the progression to cancer using mathematical models; these mostly consider the evolution of a well-mixed cell population, even though pre-cancerous cells often evolve in highly structured epithelial tissues. In this study, we propose a novel model of cancer progression that considers a spatially structured cell population where clones expand via adaptive waves. This model is used to assess two different paradigms of asexual evolution that have been suggested to delineate the process of cancer progression. The standard scenario of periodic selection assumes that driver mutations are accumulated strictly sequentially over time. However, when the mutation supply is sufficiently high, clones may arise simultaneously on distinct genetic backgrounds, and clonal adaptation waves interfere with each other. We find that in the presence of clonal interference, spatial structure increases the waiting time for cancer, leads to a patchwork structure of non-uniformly sized clones and decreases the survival probability of virtually neutral (passenger) mutations, and that genetic distance begins to increase over a characteristic length scale Lc. These characteristic features of clonal interference may help us to predict the onset of cancers with pronounced spatial structure and to interpret spatially sampled genetic data obtained from biopsies. Our estimates suggest that clonal interference likely occurs in the progression of colon cancer and possibly other cancers where spatial structure matters.

  14. A Structural Equation Approach to Models with Spatial Dependence

    NARCIS (Netherlands)

    Oud, Johan H. L.; Folmer, Henk

    We introduce the class of structural equation models (SEMs) and corresponding estimation procedures into a spatial dependence framework. SEM allows both latent and observed variables within one and the same (causal) model. Compared with models with observed variables only, this feature makes it

  15. A structural equation approach to models with spatial dependence

    NARCIS (Netherlands)

    Oud, J.H.L.; Folmer, H.

    2008-01-01

    We introduce the class of structural equation models (SEMs) and corresponding estimation procedures into a spatial dependence framework. SEM allows both latent and observed variables within one and the same (causal) model. Compared with models with observed variables only, this feature makes it

  16. A Structural Equation Approach to Models with Spatial Dependence

    NARCIS (Netherlands)

    Oud, J.H.L.; Folmer, H.

    2008-01-01

    We introduce the class of structural equation models (SEMs) and corresponding estimation procedures into a spatial dependence framework. SEM allows both latent and observed variables within one and the same (causal) model. Compared with models with observed variables only, this feature makes it

  17. Digital Speckle Photography of Subpixel Displacements of Speckle Structures Based on Analysis of Their Spatial Spectra

    Science.gov (United States)

    Maksimova, L. A.; Ryabukho, P. V.; Mysina, N. Yu.; Lyakin, D. V.; Ryabukho, V. P.

    2018-04-01

    We have investigated the capabilities of the method of digital speckle interferometry for determining subpixel displacements of a speckle structure formed by a displaceable or deformable object with a scattering surface. An analysis of spatial spectra of speckle structures makes it possible to perform measurements with a subpixel accuracy and to extend the lower boundary of the range of measurements of displacements of speckle structures to the range of subpixel values. The method is realized on the basis of digital recording of the images of undisplaced and displaced speckle structures, their spatial frequency analysis using numerically specified constant phase shifts, and correlation analysis of spatial spectra of speckle structures. Transformation into the frequency range makes it possible to obtain quantities to be measured with a subpixel accuracy from the shift of the interference-pattern minimum in the diffraction halo by introducing an additional phase shift into the complex spatial spectrum of the speckle structure or from the slope of the linear plot of the function of accumulated phase difference in the field of the complex spatial spectrum of the displaced speckle structure. The capabilities of the method have been investigated in natural experiment.

  18. Spatial structure of the arc in a pulsed GMAW process

    International Nuclear Information System (INIS)

    Kozakov, R; Gött, G; Schöpp, H; Uhrlandt, D; Schnick, M; Häßler, M; Füssel, U; Rose, S

    2013-01-01

    A pulsed gas metal arc welding (GMAW) process of steel under argon shielding gas in the globular mode is investigated by measurements and simulation. The analysis is focussed on the spatial structure of the arc during the current pulse. Therefore, the radial profiles of the temperature, the metal vapour species and the electric conductivity are determined at different heights above the workpiece by optical emission spectroscopy (OES). It is shown that under the presence of metal vapour the temperature minimum occurs at the centre of the arc. This minimum is preserved at different axial positions up to 1 mm above the workpiece. In addition, estimations of the electric field in the arc from the measurements are given. All these results are compared with magneto-hydrodynamic simulations which include the evaporation of the wire material and the change of the plasma properties due to the metal vapour admixture in particular. The experimental method and the simulation model are validated by means of the satisfactory correspondence between the results. Possible reasons for the remaining deviations and improvements of the methods which should be aspired are discussed. (paper)

  19. Spatial Dynamics and Determinants of County-Level Education Expenditure in China

    Science.gov (United States)

    Gu, Jiafeng

    2012-01-01

    In this paper, a multivariate spatial autoregressive model of local public education expenditure determination with autoregressive disturbance is developed and estimated. The existence of spatial interdependence is tested using Moran's I statistic and Lagrange multiplier test statistics for both the spatial error and spatial lag models. The full…

  20. A general modeling framework for describing spatially structured population dynamics

    Science.gov (United States)

    Sample, Christine; Fryxell, John; Bieri, Joanna; Federico, Paula; Earl, Julia; Wiederholt, Ruscena; Mattsson, Brady; Flockhart, Tyler; Nicol, Sam; Diffendorfer, James E.; Thogmartin, Wayne E.; Erickson, Richard A.; Norris, D. Ryan

    2017-01-01

    Variation in movement across time and space fundamentally shapes the abundance and distribution of populations. Although a variety of approaches model structured population dynamics, they are limited to specific types of spatially structured populations and lack a unifying framework. Here, we propose a unified network-based framework sufficiently novel in its flexibility to capture a wide variety of spatiotemporal processes including metapopulations and a range of migratory patterns. It can accommodate different kinds of age structures, forms of population growth, dispersal, nomadism and migration, and alternative life-history strategies. Our objective was to link three general elements common to all spatially structured populations (space, time and movement) under a single mathematical framework. To do this, we adopt a network modeling approach. The spatial structure of a population is represented by a weighted and directed network. Each node and each edge has a set of attributes which vary through time. The dynamics of our network-based population is modeled with discrete time steps. Using both theoretical and real-world examples, we show how common elements recur across species with disparate movement strategies and how they can be combined under a unified mathematical framework. We illustrate how metapopulations, various migratory patterns, and nomadism can be represented with this modeling approach. We also apply our network-based framework to four organisms spanning a wide range of life histories, movement patterns, and carrying capacities. General computer code to implement our framework is provided, which can be applied to almost any spatially structured population. This framework contributes to our theoretical understanding of population dynamics and has practical management applications, including understanding the impact of perturbations on population size, distribution, and movement patterns. By working within a common framework, there is less chance

  1. Determinants of Glycosaminoglycan (GAG Structure

    Directory of Open Access Journals (Sweden)

    Kristian Prydz

    2015-08-01

    Full Text Available Proteoglycans (PGs are glycosylated proteins of biological importance at cell surfaces, in the extracellular matrix, and in the circulation. PGs are produced and modified by glycosaminoglycan (GAG chains in the secretory pathway of animal cells. The most common GAG attachment site is a serine residue followed by a glycine (-ser-gly-, from which a linker tetrasaccharide extends and may continue as a heparan sulfate, a heparin, a chondroitin sulfate, or a dermatan sulfate GAG chain. Which type of GAG chain becomes attached to the linker tetrasaccharide is influenced by the structure of the protein core, modifications occurring to the linker tetrasaccharide itself, and the biochemical environment of the Golgi apparatus, where GAG polymerization and modification by sulfation and epimerization take place. The same cell type may produce different GAG chains that vary, depending on the extent of epimerization and sulfation. However, it is not known to what extent these differences are caused by compartmental segregation of protein cores en route through the secretory pathway or by differential recruitment of modifying enzymes during synthesis of different PGs. The topic of this review is how different aspects of protein structure, cellular biochemistry, and compartmentalization may influence GAG synthesis.

  2. Vascular structure determines pulmonary blood flow distribution

    Science.gov (United States)

    Hlastala, M. P.; Glenny, R. W.

    1999-01-01

    Scientific knowledge develops through the evolution of new concepts. This process is usually driven by new methodologies that provide observations not previously available. Understanding of pulmonary blood flow determinants advanced significantly in the 1960s and is now changing rapidly again, because of increased spatial resolution of regional pulmonary blood flow measurements.

  3. Determining disease intervention strategies using spatially resolved simulations.

    Directory of Open Access Journals (Sweden)

    Mark Read

    Full Text Available Predicting efficacy and optimal drug delivery strategies for small molecule and biological therapeutics is challenging due to the complex interactions between diverse cell types in different tissues that determine disease outcome. Here we present a new methodology to simulate inflammatory disease manifestation and test potential intervention strategies in silico using agent-based computational models. Simulations created using this methodology have explicit spatial and temporal representations, and capture the heterogeneous and stochastic cellular behaviours that lead to emergence of pathology or disease resolution. To demonstrate this methodology we have simulated the prototypic murine T cell-mediated autoimmune disease experimental autoimmune encephalomyelitis, a mouse model of multiple sclerosis. In the simulation immune cell dynamics, neuronal damage and tissue specific pathology emerge, closely resembling behaviour found in the murine model. Using the calibrated simulation we have analysed how changes in the timing and efficacy of T cell receptor signalling inhibition leads to either disease exacerbation or resolution. The technology described is a powerful new method to understand cellular behaviours in complex inflammatory disease, permits rational design of drug interventional strategies and has provided new insights into the role of TCR signalling in autoimmune disease progression.

  4. Measurement of turbulent spatial structure and kinetic energy spectrum by exact temporal-to-spatial mapping

    Science.gov (United States)

    Buchhave, Preben; Velte, Clara M.

    2017-08-01

    We present a method for converting a time record of turbulent velocity measured at a point in a flow to a spatial velocity record consisting of consecutive convection elements. The spatial record allows computation of dynamic statistical moments such as turbulent kinetic wavenumber spectra and spatial structure functions in a way that completely bypasses the need for Taylor's hypothesis. The spatial statistics agree with the classical counterparts, such as the total kinetic energy spectrum, at least for spatial extents up to the Taylor microscale. The requirements for applying the method are access to the instantaneous velocity magnitude, in addition to the desired flow quantity, and a high temporal resolution in comparison to the relevant time scales of the flow. We map, without distortion and bias, notoriously difficult developing turbulent high intensity flows using three main aspects that distinguish these measurements from previous work in the field: (1) The measurements are conducted using laser Doppler anemometry and are therefore not contaminated by directional ambiguity (in contrast to, e.g., frequently employed hot-wire anemometers); (2) the measurement data are extracted using a correctly and transparently functioning processor and are analysed using methods derived from first principles to provide unbiased estimates of the velocity statistics; (3) the exact mapping proposed herein has been applied to the high turbulence intensity flows investigated to avoid the significant distortions caused by Taylor's hypothesis. The method is first confirmed to produce the correct statistics using computer simulations and later applied to measurements in some of the most difficult regions of a round turbulent jet—the non-equilibrium developing region and the outermost parts of the developed jet. The proposed mapping is successfully validated using corresponding directly measured spatial statistics in the fully developed jet, even in the difficult outer regions of

  5. A Malthusian curb on spatial structure in microorganism populations.

    Science.gov (United States)

    Martin, A P

    2004-10-07

    That all organisms are born in the company of a parent but die alone is a fundamental biological asymmetry. It has been suggested that this provides a deep-rooted source of spatial pattern formation for microorganisms even at the scale of the population. Such a theory, however, neglects the strong influence in nature of the limited and spatially variable availability of food. The tendency, first recognized by Thomas Malthus in the 18th century, of a population to out-strip its food resources will eventually lead, through local starvation, to the suppression of a heterogeneity growing within a population. Using a generic model it is demonstrated that including local food limitation of breeding strongly dampens spatial structure otherwise resulting from birth and death. The extent of this damping is shown to be a function of the strength of the coupling between organisms and their food and of the total abundance of organic material. Moreover, this work provides an example of a density-dependent process acting to diminish spatial structure rather than to create it and highlights the rich variety of behaviour that is missed by continuum models which fail to represent such local dynamics.

  6. Control of Spin Wave Dynamics in Spatially Twisted Magnetic Structures

    Science.gov (United States)

    2017-06-27

    control the spin wave dynamics of magnetic structures twisted spatially, we prepared the exchange-coupled films with the hard magnetic L10-FePt and...information writing of magnetic storage and spintronic applications. Introduction and Objective: Recent rapid progress in the research field of nano...scaled bilayer elements is also an important aim of this project. Approach/Method: The exchange-coupled films with the hard magnetic L10-FePt and

  7. From mobile phone data to the spatial structure of cities

    Science.gov (United States)

    Louail, Thomas; Lenormand, Maxime; Cantu Ros, Oliva G.; Picornell, Miguel; Herranz, Ricardo; Frias-Martinez, Enrique; Ramasco, José J.; Barthelemy, Marc

    2014-01-01

    Pervasive infrastructures, such as cell phone networks, enable to capture large amounts of human behavioral data but also provide information about the structure of cities and their dynamical properties. In this article, we focus on these last aspects by studying phone data recorded during 55 days in 31 Spanish cities. We first define an urban dilatation index which measures how the average distance between individuals evolves during the day, allowing us to highlight different types of city structure. We then focus on hotspots, the most crowded places in the city. We propose a parameter free method to detect them and to test the robustness of our results. The number of these hotspots scales sublinearly with the population size, a result in agreement with previous theoretical arguments and measures on employment datasets. We study the lifetime of these hotspots and show in particular that the hierarchy of permanent ones, which constitute the ‘heart' of the city, is very stable whatever the size of the city. The spatial structure of these hotspots is also of interest and allows us to distinguish different categories of cities, from monocentric and “segregated” where the spatial distribution is very dependent on land use, to polycentric where the spatial mixing between land uses is much more important. These results point towards the possibility of a new, quantitative classification of cities using high resolution spatio-temporal data. PMID:24923248

  8. Monte Carlo determination of heteroepitaxial misfit structures

    DEFF Research Database (Denmark)

    Baker, J.; Lindgård, Per-Anker

    1996-01-01

    We use Monte Carlo simulations to determine the structure of KBr overlayers on a NaCl(001) substrate, a system with large (17%) heteroepitaxial misfit. The equilibrium relaxation structure is determined for films of 2-6 ML, for which extensive helium-atom scattering data exist for comparison...

  9. POPULATION STRUCTURE AND SPATIAL DISTRIBUTION OF Ceratozamia mexicana BRONGN. (ZAMIACEAE IN PRESERVED AND DISTURBED ENVIRONMENTS

    Directory of Open Access Journals (Sweden)

    Andrés Rivera-Fernández

    2012-11-01

    Full Text Available Vegetal populations are affected by biotic and abiotic factors that influence the regeneration processes. The aims of this study were to know the population structure of Ceratozamia mexicana under two contrasting conditions (conserved site and disturbed site, and to determine if the sexual structure, the population density and the spatial distribution of C. mexicana are modified by effect of disturbance. Eight plots of 25 m2 within each site (conserved and disturbed were used. The structure and spatial distribution of the sites were determined. Methods included analysis of variance, spatial distribution indexes, and climatic and edaphic factors determined by conventional methods for their comparison. The conserved site showed a demographic structure of an inverted "J", while the disturbed site varied slightly with more discontinuous distribution. Population density was 0.78 individuals/m2 in the conserved site and 0.26 individuals/m2 in the disturbed site. Spatial distribution for all development stages of the plant was random, with the exception of the seedling stage, which was aggregated. Results showed that perturbation decreases the density of plants and removes reproductive individuals, which threatens the persistence of the population.

  10. A transfer-matrix method for spatially modulated structures

    International Nuclear Information System (INIS)

    Surda, A.

    1991-03-01

    A cluster transfer-matrix method convenient for calculation of spatially modulated structures of a wide class of lattice-gas models is developed. The method formulates the problem of calculation of the partition function in terms of non-linear mapping of effective multi-site fields. It is applied to a lattice-gas model qualitatively describing the system of oxygen atoms in the basal planes of high-temperature superconductors. The properties of an incommensurate structure occurring at intermediate temperatures are discussed in detail. (author). 21 refs, 15 figs

  11. BIRTHDAY CAKE ACTIVITY STRUCTURED ARRANGEMENT FOR HELPING CHILDREN DETERMINING QUANTITIES

    Directory of Open Access Journals (Sweden)

    Neni Mariana

    2010-07-01

    Full Text Available Few researches have been concerned about relation between children’s spatialthinking and number sense. Narrowing for this small research, we focused onone component of spatial thinking, that is structuring objects, and onecomponent of number senses, that is cardinality by determining quantities. Thisstudy focused on a design research that was conducted in Indonesia in which weinvestigated pre-school children’s (between 2 and 3.5 years old ability inmaking structured arrangement and their ability to determine the quantities bylooking at the arrangements. The result shows us that some of the children wereable to make such arrangement. However, the children found difficulties eitherto determine quantities from those arrangements or to compare some structuresto easily recognize number of objects.Keywords: structures, structured arrangement, cardinality DOI: http://dx.doi.org/10.22342/jme.1.1.790.53-70

  12. Spatial and Temporal Extent of Ion Spectral Structures at the Inner Edge of the Plasma Sheet

    Science.gov (United States)

    Ferradas, C.; Reeves, G. D.; Zhang, J.; Spence, H. E.; Kistler, L. M.; Larsen, B.; Skoug, R. M.; Funsten, H. O.

    2017-12-01

    Several ion spectral structures are observed near the inner edge of the plasma sheet and constitute the signatures of ion drift and loss in the highly dynamic environment of the inner magnetosphere. Their study helps us understand ion access and losses in this region. Several studies have found that these structures vary with geomagnetic activity, local time, and ion species, but their spatial and temporal extent remain undetermined. We use data from the Helium, Oxygen, Proton, and Electron (HOPE) mass spectrometers onboard the Van Allen Probes to analyze the spectral structures in the energy range of 1- 50 keV. HOPE measurements on both Van Allen Probes spacecraft enable us to resolve the extent of these ion structures in space and time. As the structures respond to changes in the convection electric field on a variety of time scales, the lapping of the two spacecraft on time scales of minutes to hours helps determine their spatial and temporal evolution.

  13. Efficient Spatial Data Structure for Multiversion Management of Engineering Drawings

    Directory of Open Access Journals (Sweden)

    Yasuaki Nakamura

    2004-08-01

    Full Text Available In the engineering database system, multiple versions of a design including engineering drawings should be managed efficiently. The paper proposes an extended spatial data structure for efficient management of multiversion engineering drawings. The R-tree is adapted as a basic data structure. The efficient mechanism to manage the difference between drawings is introduced to the R-tree to eliminate redundant duplications and to reduce the amount of storage required for the data structure. The extended data structures of the R-tree, MVR and MVR* trees, are developed and the performances of these trees are evaluated. A series of simulation tests shows that, compared with the basic R-tree, the amounts of storage required for the MVR and MVR* trees are reduced to 50% and 30%, respectively. The search efficiencies of the R, MVR, and MVR* trees are almost the same.

  14. Quantifying spatial genetic structuring in mesophotic populations of the precious coral Corallium rubrum.

    Directory of Open Access Journals (Sweden)

    Federica Costantini

    Full Text Available While shallow water red coral populations have been overharvested in the past, nowadays, commercial harvesting shifted its pressure on mesophotic organisms. An understanding of red coral population structure, particularly larval dispersal patterns and connectivity among harvested populations is paramount to the viability of the species. In order to determine patterns of genetic spatial structuring of deep water Corallium rubrum populations, for the first time, colonies found between 58-118 m depth within the Tyrrhenian Sea were collected and analyzed. Ten microsatellite loci and two regions of mitochondrial DNA (mtMSH and mtC were used to quantify patterns of genetic diversity within populations and to define population structuring at spatial scales from tens of metres to hundreds of kilometres. Microsatellites showed heterozygote deficiencies in all populations. Significant levels of genetic differentiation were observed at all investigated spatial scales, suggesting that populations are likely to be isolated. This differentiation may by the results of biological interactions, occurring within a small spatial scale and/or abiotic factors acting at a larger scale. Mitochondrial markers revealed significant genetic structuring at spatial scales greater then 100 km showing the occurrence of a barrier to gene flow between northern and southern Tyrrhenian populations. These findings provide support for the establishment of marine protected areas in the deep sea and off-shore reefs, in order to effectively maintain genetic diversity of mesophotic red coral populations.

  15. Quantifying spatial genetic structuring in mesophotic populations of the precious coral Corallium rubrum.

    Science.gov (United States)

    Costantini, Federica; Carlesi, Lorenzo; Abbiati, Marco

    2013-01-01

    While shallow water red coral populations have been overharvested in the past, nowadays, commercial harvesting shifted its pressure on mesophotic organisms. An understanding of red coral population structure, particularly larval dispersal patterns and connectivity among harvested populations is paramount to the viability of the species. In order to determine patterns of genetic spatial structuring of deep water Corallium rubrum populations, for the first time, colonies found between 58-118 m depth within the Tyrrhenian Sea were collected and analyzed. Ten microsatellite loci and two regions of mitochondrial DNA (mtMSH and mtC) were used to quantify patterns of genetic diversity within populations and to define population structuring at spatial scales from tens of metres to hundreds of kilometres. Microsatellites showed heterozygote deficiencies in all populations. Significant levels of genetic differentiation were observed at all investigated spatial scales, suggesting that populations are likely to be isolated. This differentiation may by the results of biological interactions, occurring within a small spatial scale and/or abiotic factors acting at a larger scale. Mitochondrial markers revealed significant genetic structuring at spatial scales greater then 100 km showing the occurrence of a barrier to gene flow between northern and southern Tyrrhenian populations. These findings provide support for the establishment of marine protected areas in the deep sea and off-shore reefs, in order to effectively maintain genetic diversity of mesophotic red coral populations.

  16. Using Remote Sensing to Determine the Spatial Scales of Estuaries

    Science.gov (United States)

    Davis, C. O.; Tufillaro, N.; Nahorniak, J.

    2016-02-01

    One challenge facing Earth system science is to understand and quantify the complexity of rivers, estuaries, and coastal zone regions. Earlier studies using data from airborne hyperspectral imagers (Bissett et al., 2004, Davis et al., 2007) demonstrated from a very limited data set that the spatial scales of the coastal ocean could be resolved with spatial sampling of 100 m Ground Sample Distance (GSD) or better. To develop a much larger data set (Aurin et al., 2013) used MODIS 250 m data for a wide range of coastal regions. Their conclusion was that farther offshore 500 m GSD was adequate to resolve large river plume features while nearshore regions (a few kilometers from the coast) needed higher spatial resolution data not available from MODIS. Building on our airborne experience, the Hyperspectral Imager for the Coastal Ocean (HICO, Lucke et al., 2011) was designed to provide hyperspectral data for the coastal ocean at 100 m GSD. HICO operated on the International Space Station for 5 years and collected over 10,000 scenes of the coastal ocean and other regions around the world. Here we analyze HICO data from an example set of major river delta regions to assess the spatial scales of variability in those systems. In one system, the San Francisco Bay and Delta, we also analyze Landsat 8 OLI data at 30 m and 15 m to validate the 100 m GSD sampling scale for the Bay and assess spatial sampling needed as you move up river.

  17. Generating spatial precipitation ensembles: impact of temporal correlation structure

    Science.gov (United States)

    Rakovec, O.; Hazenberg, P.; Torfs, P. J. J. F.; Weerts, A. H.; Uijlenhoet, R.

    2012-09-01

    Sound spatially distributed rainfall fields including a proper spatial and temporal error structure are of key interest for hydrologists to force hydrological models and to identify uncertainties in the simulated and forecasted catchment response. The current paper presents a temporally coherent error identification method based on time-dependent multivariate spatial conditional simulations, which are conditioned on preceding simulations. A sensitivity analysis and real-world experiment are carried out within the hilly region of the Belgian Ardennes. Precipitation fields are simulated for pixels of 10 km × 10 km resolution. Uncertainty analyses in the simulated fields focus on (1) the number of previous simulation hours on which the new simulation is conditioned, (2) the advection speed of the rainfall event, (3) the size of the catchment considered, and (4) the rain gauge density within the catchment. The results for a sensitivity analysis show for typical advection speeds >20 km h-1, no uncertainty is added in terms of across ensemble spread when conditioned on more than one or two previous hourly simulations. However, for the real-world experiment, additional uncertainty can still be added when conditioning on a larger number of previous simulations. This is because for actual precipitation fields, the dynamics exhibit a larger spatial and temporal variability. Moreover, by thinning the observation network with 50%, the added uncertainty increases only slightly and the cross-validation shows that the simulations at the unobserved locations are unbiased. Finally, the first-order autocorrelation coefficients show clear temporal coherence in the time series of the areal precipitation using the time-dependent multivariate conditional simulations, which was not the case using the time-independent univariate conditional simulations. The presented work can be easily implemented within a hydrological calibration and data assimilation framework and can be used as an

  18. Generating spatial precipitation ensembles: impact of temporal correlation structure

    Directory of Open Access Journals (Sweden)

    O. Rakovec

    2012-09-01

    Full Text Available Sound spatially distributed rainfall fields including a proper spatial and temporal error structure are of key interest for hydrologists to force hydrological models and to identify uncertainties in the simulated and forecasted catchment response. The current paper presents a temporally coherent error identification method based on time-dependent multivariate spatial conditional simulations, which are conditioned on preceding simulations. A sensitivity analysis and real-world experiment are carried out within the hilly region of the Belgian Ardennes. Precipitation fields are simulated for pixels of 10 km × 10 km resolution. Uncertainty analyses in the simulated fields focus on (1 the number of previous simulation hours on which the new simulation is conditioned, (2 the advection speed of the rainfall event, (3 the size of the catchment considered, and (4 the rain gauge density within the catchment. The results for a sensitivity analysis show for typical advection speeds >20 km h−1, no uncertainty is added in terms of across ensemble spread when conditioned on more than one or two previous hourly simulations. However, for the real-world experiment, additional uncertainty can still be added when conditioning on a larger number of previous simulations. This is because for actual precipitation fields, the dynamics exhibit a larger spatial and temporal variability. Moreover, by thinning the observation network with 50%, the added uncertainty increases only slightly and the cross-validation shows that the simulations at the unobserved locations are unbiased. Finally, the first-order autocorrelation coefficients show clear temporal coherence in the time series of the areal precipitation using the time-dependent multivariate conditional simulations, which was not the case using the time-independent univariate conditional simulations. The presented work can be easily implemented within a hydrological calibration and data assimilation

  19. Non-Stationary Dependence Structures for Spatial Extremes

    KAUST Repository

    Huser, Raphaël

    2016-03-03

    Max-stable processes are natural models for spatial extremes because they provide suitable asymptotic approximations to the distribution of maxima of random fields. In the recent past, several parametric families of stationary max-stable models have been developed, and fitted to various types of data. However, a recurrent problem is the modeling of non-stationarity. In this paper, we develop non-stationary max-stable dependence structures in which covariates can be easily incorporated. Inference is performed using pairwise likelihoods, and its performance is assessed by an extensive simulation study based on a non-stationary locally isotropic extremal t model. Evidence that unknown parameters are well estimated is provided, and estimation of spatial return level curves is discussed. The methodology is demonstrated with temperature maxima recorded over a complex topography. Models are shown to satisfactorily capture extremal dependence.

  20. Spatial Pattern Determination of Biodiversity Threats at Landscape Level (Case Study: Golestan Province

    Directory of Open Access Journals (Sweden)

    R. Mirzaei

    2015-06-01

    Full Text Available Mapping spatial patterns of potential biodiversity threats is one of the important steps for effective conservation planning and activities. To determine the spatial patterns of threats in Golestan province, 12 criteria in four main groups including structural (fractal coefficient of perimeter, circularity ratio of area, average slope, compositional aspects of biodiversity (presence of species at risk, non-biological threats (distance to city, distance to village, distance to road, distance to infrastructure, distance to agricultural land, soil pollution, risk of fire and isolation (Nearest Neighbor Index were used. These data layers were digitized in GIS environment and were weighted through Analytical Hierarchy Process. A weighted linear combination was then used to map the spatial pattern of biodiversity threats in the province. Compositional aspect (0.59, non-biological threats (0.23, isolation (0.11, and structural aspect (0.07 were relatively weighted in the order of importance. Central parts of the province and patches in the northern and southern parts were recognized to be more exposed to biodiversity threats. The central parts of the province were mostly threatened by urban, industrial, road and agricultural development, whereas the northern and southern parts were recognized as areas of conservation importance having a variety of threatened birds.

  1. Hierarchical spatial structure of stream fish colonization and extinction

    Science.gov (United States)

    Hitt, N.P.; Roberts, J.H.

    2012-01-01

    Spatial variation in extinction and colonization is expected to influence community composition over time. In stream fish communities, local species richness (alpha diversity) and species turnover (beta diversity) are thought to be regulated by high extinction rates in headwater streams and high colonization rates in downstream areas. We evaluated the spatiotemporal structure of fish communities in streams originally surveyed by Burton and Odum 1945 (Ecology 26: 182-194) in Virginia, USA and explored the effects of species traits on extinction and colonization dynamics. We documented dramatic changes in fish community structure at both the site and stream scales. Of the 34 fish species observed, 20 (59%) were present in both time periods, but 11 (32%) colonized the study area and three (9%) were extirpated over time. Within streams, alpha diversity increased in two of three streams but beta diversity decreased dramatically in all streams due to fish community homogenization caused by colonization of common species and extirpation of rare species. Among streams, however, fish communities differentiated over time. Regression trees indicated that reproductive life-history traits such as spawning mound construction, associations with mound-building species, and high fecundity were important predictors of species persistence or colonization. Conversely, native fishes not associated with mound-building exhibited the highest rates of extirpation from streams. Our results demonstrate that stream fish colonization and extinction dynamics exhibit hierarchical spatial structure and suggest that mound-building fishes serve as keystone species for colonization of headwater streams.

  2. Structural determinants of students' employability: Influence of ...

    African Journals Online (AJOL)

    Structural determinants of students' employability: Influence of career ... greatest influence on students' employability, followed by decision-making skills, and ... efforts in developing app-ropriate strategies so as to engage undergraduates with ...

  3. Spatial structure of compound dither in L/H transition

    International Nuclear Information System (INIS)

    Toda, Shinichiro; Itoh, Kimitaka; Itoh, Sanae I.; Yagi, Masatoshi; Fukuyama, Atsushi

    2000-03-01

    To study the plasma evolution and spatial structure at the L/H transition, the double hysteresis is examined by use of the 1-dimensional transport model equations. Three mechanisms for the bipolar losses, i.e., the loss cone loss, collisional bulk viscosity loss of ions and the anomalous loss are simultaneously retained. Five-fold multiple bifurcations are found to exist at the plasma edge, similar to the previous 0-dimensional study. Double hysteresis causes a self-generated oscillation, which is attributed to the compound dither, a kind of ELMs. Spatio-temporal evolution of the compound dither is analyzed. (author)

  4. Spatially periodic structures, under femtosecond pulsed excitation of crystals

    International Nuclear Information System (INIS)

    Martynovitch, Evgueni F.; Petite, Guillaume; Dresvianski, Vladimir P.; Starchenko, Anton A.

    2004-01-01

    Measuring the luminescence intensity of specially prepared irradiation defects induced in crystals, we observe that the longitudinal structure of quasi-interferences induced by two orthogonally polarized femtosecond pulses propagating together with different velocities is insensitive to the spatial broadening due to velocity dispersion in the crystals. On the contrary, it does depend on the pulse duration when it is changed by varying the spectral width of the radiation. It thus allows a direct measurement of the coherence time of such pulses. Stability of the axial selectivity is a good sign, taking away a number of serious limitations concerning possible applications

  5. Characterizing the multi–scale spatial structure of remotely sensed evapotranspiration with information theory

    Directory of Open Access Journals (Sweden)

    N. A. Brunsell

    2011-08-01

    Full Text Available A more thorough understanding of the multi-scale spatial structure of land surface heterogeneity will enhance understanding of the relationships and feedbacks between land surface conditions, mass and energy exchanges between the surface and the atmosphere, and regional meteorological and climatological conditions. The objectives of this study were to (1 quantify which spatial scales are dominant in determining the evapotranspiration flux between the surface and the atmosphere and (2 to quantify how different spatial scales of atmospheric and surface processes interact for different stages of the phenological cycle. We used the ALEXI/DisALEXI model for three days (DOY 181, 229 and 245 in 2002 over the Ft. Peck Ameriflux site to estimate the latent heat flux from Landsat, MODIS and GOES satellites. We then applied a multiresolution information theory methodology to quantify these interactions across different spatial scales and compared the dynamics across the different sensors and different periods. We note several important results: (1 spatial scaling characteristics vary with day, but are usually consistent for a given sensor, but (2 different sensors give different scalings, and (3 the different sensors exhibit different scaling relationships with driving variables such as fractional vegetation and near surface soil moisture. In addition, we note that while the dominant length scale of the vegetation index remains relatively constant across the dates, the contribution of the vegetation index to the derived latent heat flux varies with time. We also note that length scales determined from MODIS are consistently larger than those determined from Landsat, even at scales that should be detectable by MODIS. This may imply an inability of the MODIS sensor to accurately determine the fine scale spatial structure of the land surface. These results aid in identifying the dominant cross-scale nature of local to regional biosphere

  6. Protein Structure Determination Using Chemical Shifts

    DEFF Research Database (Denmark)

    Christensen, Anders Steen

    is determined using only chemical shifts recorded and assigned through automated processes. The CARMSD to the experimental X-ray for this structure is 1.1. Å. Additionally, the method is combined with very sparse NOE-restraints and evolutionary distance restraints and tested on several protein structures >100...

  7. Population and evolutionary dynamics in spatially structured seasonally varying environments.

    Science.gov (United States)

    Reid, Jane M; Travis, Justin M J; Daunt, Francis; Burthe, Sarah J; Wanless, Sarah; Dytham, Calvin

    2018-03-25

    Increasingly imperative objectives in ecology are to understand and forecast population dynamic and evolutionary responses to seasonal environmental variation and change. Such population and evolutionary dynamics result from immediate and lagged responses of all key life-history traits, and resulting demographic rates that affect population growth rate, to seasonal environmental conditions and population density. However, existing population dynamic and eco-evolutionary theory and models have not yet fully encompassed within-individual and among-individual variation, covariation, structure and heterogeneity, and ongoing evolution, in a critical life-history trait that allows individuals to respond to seasonal environmental conditions: seasonal migration. Meanwhile, empirical studies aided by new animal-tracking technologies are increasingly demonstrating substantial within-population variation in the occurrence and form of migration versus year-round residence, generating diverse forms of 'partial migration' spanning diverse species, habitats and spatial scales. Such partially migratory systems form a continuum between the extreme scenarios of full migration and full year-round residence, and are commonplace in nature. Here, we first review basic scenarios of partial migration and associated models designed to identify conditions that facilitate the maintenance of migratory polymorphism. We highlight that such models have been fundamental to the development of partial migration theory, but are spatially and demographically simplistic compared to the rich bodies of population dynamic theory and models that consider spatially structured populations with dispersal but no migration, or consider populations experiencing strong seasonality and full obligate migration. Second, to provide an overarching conceptual framework for spatio-temporal population dynamics, we define a 'partially migratory meta-population' system as a spatially structured set of locations that can

  8. A quantitative method for determining spatial discriminative capacity

    Directory of Open Access Journals (Sweden)

    Dennis Robert G

    2008-03-01

    Full Text Available Abstract Background The traditional two-point discrimination (TPD test, a widely used tactile spatial acuity measure, has been criticized as being imprecise because it is based on subjective criteria and involves a number of non-spatial cues. The results of a recent study showed that as two stimuli were delivered simultaneously, vibrotactile amplitude discrimination became worse when the two stimuli were positioned relatively close together and was significantly degraded when the probes were within a subject's two-point limen. The impairment of amplitude discrimination with decreasing inter-probe distance suggested that the metric of amplitude discrimination could possibly provide a means of objective and quantitative measurement of spatial discrimination capacity. Methods A two alternative forced-choice (2AFC tracking procedure was used to assess a subject's ability to discriminate the amplitude difference between two stimuli positioned at near-adjacent skin sites. Two 25 Hz flutter stimuli, identical except for a constant difference in amplitude, were delivered simultaneously to the hand dorsum. The stimuli were initially spaced 30 mm apart, and the inter-stimulus distance was modified on a trial-by-trial basis based on the subject's performance of discriminating the stimulus with higher intensity. The experiment was repeated via sequential, rather than simultaneous, delivery of the same vibrotactile stimuli. Results Results obtained from this study showed that the performance of the amplitude discrimination task was significantly degraded when the stimuli were delivered simultaneously and were near a subject's two-point limen. In contrast, subjects were able to correctly discriminate between the amplitudes of the two stimuli when they were sequentially delivered at all inter-probe distances (including those within the two-point limen, and improved when an adapting stimulus was delivered prior to simultaneously delivered stimuli. Conclusion

  9. Risk Management of Large RC Structures within Spatial Information System

    DEFF Research Database (Denmark)

    Qin, Jianjun; Faber, Michael Havbro

    2012-01-01

    Abstract: The present article addresses the development of a spatial information system (SIS), which aims to facilitate risk management of large‐scale concrete structures. The formulation of the SIS is based on ideas developed in the context of indicator‐based risk modeling for concrete structures...... subject to corrosion and geographical information system based risk modeling concerning large‐scale risk management. The term “risk management” here refers in particular to the process of condition assessment and optimization of the inspection and repair activities. The SIS facilitates the storage...... and handling of all relevant information to the risk management. The probabilistic modeling utilized in the condition assessment takes basis in a Bayesian hierarchical modeling philosophy. It facilitates the updating of risks as well as optimizing inspection plans whenever new information about the condition...

  10. Killing mediated spatial structure in V. Cholerae biofilms

    Science.gov (United States)

    Yanni, David

    Most bacteria live in biofilms, which are implicated in 60 - 80 % of microbial infections in the body. The spatial structure of a biofilm confers advantages to its member-cells, such as antibiotic resistance, and is strongly affected by competition between strains and taxa. However, A complete picture of how competition affects the self-organized structure of these complex, far-from-equilibrium systems, is yet to emerge. To that end, we investigate phase separation dynamics driven by T6SS-facilitated bacterial warfare in a system composed of two strains of mutually antagonistic V. cholerae. T6SS is a contact mediated killing mechanism present in 25 % of all gram negative bacteria, and has been shown by recent work to play a major role in the spatial assortment of biofilms. T6SS events induce lysis, causing variations in local mechanical pressure, and acting as thermalizing events. We study cells immobilized in biofilms at the air-solid interface, so our experimental system represents a different type active matter, wherein activity is due to cell death and reproduction, not mobility. Here, we show how that activity imposes a constraint of minimal curvature on strain-strain interfaces; an effective Laplace pressure is characterized which governs interfacial dynamics.

  11. Thermal behavior of spatial structures under solar irradiation

    International Nuclear Information System (INIS)

    Liu, Hongbo; Liao, Xiangwei; Chen, Zhihua; Zhang, Qian

    2015-01-01

    The temperature, particularly the non-uniform temperature under solar irradiation, is the main load for large-span steel structures. Due the shortage of in-site temperature test in previous studies, an in-site test was conducted on the large-span steel structures under solar irradiation, which was covered by glass roof and light roof, to gain insight into the temperature distribution of steel members under glass roof or light roof. A numerical method also was presented and verified to forecast the temperature of steel member under glass roof or light roof. Based on the on-site measurement and numerical analyses conducted, the following conclusions were obtained: 1) a remarkable temperature difference exists between the steel member under glass roof and that under light roof, 2) solar irradiation has a significant effect on the temperature distribution and thermal behavior of large-span spatial structures, 3) negative thermal load is the controlling factor for member stress, and the positive thermal load is the controlling factor for nodal displacement. - Highlights: • Temperature was measured for a steel structures under glass roof and light roof. • Temperature simulation method was presented and verified. • The thermal behavior of steel structures under glass or light roof was presented

  12. Capital Structure Determinants and Governance Structure Variety in Franchising

    NARCIS (Netherlands)

    T. Jiang (Tao)

    2009-01-01

    textabstractThis thesis investigates two questions: the determinants of capital structure in franchising and its subsequent impact on the franchise financing decisions; and the efficient governance structure choice in franchising. We posit that firms franchise in order to benefit from the reduced

  13. Research on spatial structure of regional tourism resources——Taking Nanjing city as an example

    Directory of Open Access Journals (Sweden)

    Liu Binglin

    2017-08-01

    Full Text Available The spatial structure of tourism resources can help to understand the spatial distribution characteristics of tourism resources,and then guide the tourism planning and improve the competitive advantage of tourism area.Based on the relevant data released by Jiangsu Provincial Tourism Bureau,taking advantage of the ArcGIS platform,the development and utilization of tourism resources and the problems in the spatial structure of tourism resources were analyzed by using the superiority index,Nearest Neighbor Index and Traffic Connectivity Index.The results show that:1 the spatial distribution of tourism resources in Nanjing is clustered;the distribution of the main urban area is relatively dense,and the resource level is higher;2 the spatial distribution of the traffic network between the tourist resources is in the middle and lower levels,and the traffic loops are poor and the accessibility is not high.The accessibility degree shows ‘center high,four weeks low’ and ‘east and west high,north and south low’.3The resource of Nanjing tourism can be optimized by optimization of the transport network;by determining the core of tourism,clarifying the level of scenic spots;increasing the efforts of tourism development and developing tourism products in depth;integration of the tourism resources,construction of the clusters and zones of tourism resources;and other aspects.

  14. Hydrology Affects Environmental and Spatial Structuring of Microalgal Metacommunities in Tropical Pacific Coast Wetlands.

    Directory of Open Access Journals (Sweden)

    Carmen Rojo

    Full Text Available The alternating climate between wet and dry periods has important effects on the hydrology and therefore on niche-based processes of water bodies in tropical areas. Additionally, assemblages of microorganism can show spatial patterns, in the form of a distance decay relationship due to their size or life form. We aimed to test spatial and environmental effects, modulated by a seasonal flooding climatic pattern, on the distribution of microalgae in 30 wetlands of a tropical dry forest region: the Pacific coast of Costa Rica and Nicaragua. Three surveys were conducted corresponding to the beginning, the highest peak, and the end of the hydrological year during the wet season, and species abundance and composition of planktonic and benthic microalgae was determined. Variation partitioning analysis (as explained by spatial distance or environmental factors was applied to each seasonal dataset by means of partial redundancy analysis. Our results show that microalgal assemblages were structured by spatial and environmental factors depending on the hydrological period of the year. At the onset of hydroperiod and during flooding, neutral effects dominated community dynamics, but niche-based local effects resulted in more structured algal communities at the final periods of desiccating water bodies. Results suggest that climate-mediated effects on hydrology can influence the relative role of spatial and environmental factors on metacommunities of microalgae. Such variability needs to be accounted in order to describe accurately community dynamics in tropical coastal wetlands.

  15. Hydrology Affects Environmental and Spatial Structuring of Microalgal Metacommunities in Tropical Pacific Coast Wetlands.

    Science.gov (United States)

    Rojo, Carmen; Mesquita-Joanes, Francesc; Monrós, Juan S; Armengol, Javier; Sasa, Mahmood; Bonilla, Fabián; Rueda, Ricardo; Benavent-Corai, José; Piculo, Rubén; Segura, M Matilde

    2016-01-01

    The alternating climate between wet and dry periods has important effects on the hydrology and therefore on niche-based processes of water bodies in tropical areas. Additionally, assemblages of microorganism can show spatial patterns, in the form of a distance decay relationship due to their size or life form. We aimed to test spatial and environmental effects, modulated by a seasonal flooding climatic pattern, on the distribution of microalgae in 30 wetlands of a tropical dry forest region: the Pacific coast of Costa Rica and Nicaragua. Three surveys were conducted corresponding to the beginning, the highest peak, and the end of the hydrological year during the wet season, and species abundance and composition of planktonic and benthic microalgae was determined. Variation partitioning analysis (as explained by spatial distance or environmental factors) was applied to each seasonal dataset by means of partial redundancy analysis. Our results show that microalgal assemblages were structured by spatial and environmental factors depending on the hydrological period of the year. At the onset of hydroperiod and during flooding, neutral effects dominated community dynamics, but niche-based local effects resulted in more structured algal communities at the final periods of desiccating water bodies. Results suggest that climate-mediated effects on hydrology can influence the relative role of spatial and environmental factors on metacommunities of microalgae. Such variability needs to be accounted in order to describe accurately community dynamics in tropical coastal wetlands.

  16. Impact of spatial dimension on structural ordering in metallic glass.

    Science.gov (United States)

    Hu, Yuan-Chao; Tanaka, Hajime; Wang, Wei-Hua

    2017-08-01

    Metallic glasses (MGs) have so far attracted considerable attention for their applications as bulk materials. However, new physics and applications often emerge by dimensional reduction from three dimensions (3D) to two dimensions (2D). Here, we study, by molecular dynamics simulations, how the liquid-to-glass transition of a binary Cu_{50}Zr_{50} MG is affected by spatial dimensionality. We find clear evidence that crystal-like structural ordering controls both dynamic heterogeneity and slow dynamics, and thus plays a crucial role in the formation of the 2DMG. Although the 2DMG reproduces the dynamical behaviors of its 3D counterpart by considering Mermin-Wagner-type fluctuations specific to 2D, this atomic-scale structural mechanism is essentially different from that for the 3DMG in which icosahedral clusters incompatible with crystallographic symmetry play a key role in glassy behaviors. Our finding provides a structural mechanism for the formation of 2DMGs, which cannot be inferred from the knowledge of 3DMGs. The results suggest a structural basis for the glass transition in 2DMG and provide possible explanations for some previous experimental observations in ultrathin film MGs.

  17. Determining the spatial variability of personal sampler inlet locations.

    Science.gov (United States)

    Vinson, Robert; Volkwein, Jon; McWilliams, Linda

    2007-09-01

    This article examines the spatial variability of dust concentrations within a coal miner's breathing zone and the impact of sampling location at the cap lamp, nose, and lapel. Tests were conducted in the National Institute for Safety and Health Pittsburgh Research Laboratory full-scale, continuous miner gallery using three prototype personal dust monitors (PDM). The dust masses detected by the PDMs were used to calculate the percentage difference of dust mass between the cap lamp and the nose and between the lapel and the nose. The calculated percentage differences of the masses ranged from plus 12% to minus 25%. Breathing zone tests were also conducted in four underground coal mines using the torso of a mannequin to simulate a miner. Coal mine dust was sampled with multi-cyclone sampling cans mounted directly in front of the mannequin near the cap lamp, nose, and lapel. These four coal mine tests found that the spatial variability of dust levels and imprecision of the current personal sampler is a greater influence than the sampler location within the breathing zone. However, a one-sample t-test of this data did find that the overall mean value of the cap lamp/nose ratio was not significantly different than 1 (p-value = 0.21). However, when applied to the overall mean value of the lapel/nose ratio there was a significant difference from 1 (p-value sampling location for coal mine dust samples. But these results suggest that the cap location is slightly more indicative of what is breathed through the nose area.

  18. The influence of sampling unit size and spatial arrangement patterns on neighborhood-based spatial structure analyses of forest stands

    Energy Technology Data Exchange (ETDEWEB)

    Wang, H.; Zhang, G.; Hui, G.; Li, Y.; Hu, Y.; Zhao, Z.

    2016-07-01

    Aim of study: Neighborhood-based stand spatial structure parameters can quantify and characterize forest spatial structure effectively. How these neighborhood-based structure parameters are influenced by the selection of different numbers of nearest-neighbor trees is unclear, and there is some disagreement in the literature regarding the appropriate number of nearest-neighbor trees to sample around reference trees. Understanding how to efficiently characterize forest structure is critical for forest management. Area of study: Multi-species uneven-aged forests of Northern China. Material and methods: We simulated stands with different spatial structural characteristics and systematically compared their structure parameters when two to eight neighboring trees were selected. Main results: Results showed that values of uniform angle index calculated in the same stand were different with different sizes of structure unit. When tree species and sizes were completely randomly interspersed, different numbers of neighbors had little influence on mingling and dominance indices. Changes of mingling or dominance indices caused by different numbers of neighbors occurred when the tree species or size classes were not randomly interspersed and their changing characteristics can be detected according to the spatial arrangement patterns of tree species and sizes. Research highlights: The number of neighboring trees selected for analyzing stand spatial structure parameters should be fixed. We proposed that the four-tree structure unit is the best compromise between sampling accuracy and costs for practical forest management. (Author)

  19. Advances on surface structural determination by LEED

    International Nuclear Information System (INIS)

    Soares, Edmar A; De Carvalho, Vagner E; De Castilho, Caio M C

    2011-01-01

    In the last 40 years, low energy electron diffraction (LEED) has proved to be the most reliable quantitative technique for surface structural determination. In this review, recent developments related to the theory that gives support to LEED structural determination are discussed under a critical analysis of the main theoretical approximation-the muffin-tin calculation. The search methodologies aimed at identifying the best matches between theoretical and experimental intensity versus voltage curves are also considered, with the most recent procedures being reviewed in detail. (topical review)

  20. Dynamic multiprotein assemblies shape the spatial structure of cell signaling.

    Science.gov (United States)

    Nussinov, Ruth; Jang, Hyunbum

    2014-01-01

    Cell signaling underlies critical cellular decisions. Coordination, efficiency as well as fail-safe mechanisms are key elements. How the cell ensures that these hallmarks are at play are important questions. Cell signaling is often viewed as taking place through discrete and cross-talking pathways; oftentimes these are modularized to emphasize distinct functions. While simple, convenient and clear, such models largely neglect the spatial structure of cell signaling; they also convey inter-modular (or inter-protein) spatial separation that may not exist. Here our thesis is that cell signaling is shaped by a network of multiprotein assemblies. While pre-organized, the assemblies and network are loose and dynamic. They contain transiently-associated multiprotein complexes which are often mediated by scaffolding proteins. They are also typically anchored in the membrane, and their continuum may span the cell. IQGAP1 scaffolding protein which binds proteins including Raf, calmodulin, Mek, Erk, actin, and tens more, with actin shaping B-cell (and likely other) membrane-anchored nanoclusters and allosterically polymerizing in dynamic cytoskeleton formation, and Raf anchoring in the membrane along with Ras, provides a striking example. The multivalent network of dynamic proteins and lipids, with specific interactions forming and breaking, can be viewed as endowing gel-like properties. Collectively, this reasons that efficient, productive and reliable cell signaling takes place primarily through transient, preorganized and cooperative protein-protein interactions spanning the cell rather than stochastic, diffusion-controlled processes. Copyright © 2014 Elsevier Ltd. All rights reserved.

  1. Spatial structure and distribution of small pelagic fish in the northwestern Mediterranean Sea.

    Science.gov (United States)

    Saraux, Claire; Fromentin, Jean-Marc; Bigot, Jean-Louis; Bourdeix, Jean-Hervé; Morfin, Marie; Roos, David; Van Beveren, Elisabeth; Bez, Nicolas

    2014-01-01

    Understanding the ecological and anthropogenic drivers of population dynamics requires detailed studies on habitat selection and spatial distribution. Although small pelagic fish aggregate in large shoals and usually exhibit important spatial structure, their dynamics in time and space remain unpredictable and challenging. In the Gulf of Lions (north-western Mediterranean), sardine and anchovy biomasses have declined over the past 5 years causing an important fishery crisis while sprat abundance rose. Applying geostatistical tools on scientific acoustic surveys conducted in the Gulf of Lions, we investigated anchovy, sardine and sprat spatial distributions and structures over 10 years. Our results show that sardines and sprats were more coastal than anchovies. The spatial structure of the three species was fairly stable over time according to variogram outputs, while year-to-year variations in kriged maps highlighted substantial changes in their location. Support for the McCall's basin hypothesis (covariation of both population density and presence area with biomass) was found only in sprats, the most variable of the three species. An innovative method to investigate species collocation at different scales revealed that globally the three species strongly overlap. Although species often co-occurred in terms of presence/absence, their biomass density differed at local scale, suggesting potential interspecific avoidance or different sensitivity to local environmental characteristics. Persistent favourable areas were finally detected, but their environmental characteristics remain to be determined.

  2. Generalized synchronization and coherent structures in spatially extended systems

    International Nuclear Information System (INIS)

    Basnarkov, Lasko; Duane, Gregory S.; Kocarev, Ljupco

    2014-01-01

    We study the synchronization of a coupled pair of one-dimensional Kuramoto–Sivashinsky systems, with equations augmented by a third-space-derivative term. With two different values of a system parameter, the two systems synchronize in the generalized sense. The phenomenon persists even in the extreme case when one of the equations is missing the extra term. Master–slave synchronization error is small, so the generalized synchronization relationship is useful for predicting the state of the master from that of the slave, or conversely, for controlling the slave. The spatial density of coupling points required to bring about generalized synchronization appears to be related to the wavelength of traveling wave solutions, and more generally to the width of coherent structures in the separate systems

  3. Spatial distribution of inbound tourism in China : Determinants and implications

    NARCIS (Netherlands)

    Zhang, J.

    2009-01-01

    This study sets up an integrative framework to analyse the determinants of a region's international inbound tourism. Meanwhile, the competition and complimentarity between regions are also examined in the same framework. This study concludes that development level, openness, tourism resources,

  4. Structural Constraints On The Spatial Distribution of Aftershocks

    Science.gov (United States)

    McCloskey, J.; Nalbant, S. S.; Steacy, S.; Nostro, C.; Scotti, O.; Baumont, D.

    Real-time, forward modelling of spatial distributions of potentially damaging after- shocks by calculating stress perturbations due to large earthquakes may produce so- cially useful, time- dependent hazard estimates in the foreseeable future. Such calcula- tions, however, rely on the resolution of a stress perturbation tensor (SPT) onto planes whose geometry is unknown and decisions as to the orientations of these planes have a first order effect on the geometry of the resulting hazard distributions. Commonly, these decisions are based on the assumption that structures optimally oriented for fail- ure in the regional stress field, exist everywhere and stress maps are produced by resolving onto these orientations. Here we investigate this proposition using a 3D cal- culation for the optimally oriented planes (OOPs) for the 1992 Landers earthquake (M = 7.3). We examine the encouraged mechanisms as a function of location and show that enhancement for failure exists over a much wider area than in the equivalent, and more usual, 2.5D calculations. Mechanisms predicted in these areas are not consistent with the local structural geology, however, and corresponding aftershocks are gener- ally not observed. We argue that best hazard estimates will result from geometrically restricted versions of the OOP concept in which observed structure constrains possible orientations for failure.

  5. Spatial and mass distributions of molecular clouds and spiral structure

    International Nuclear Information System (INIS)

    Kwan, J.; Valdes, F.; National Optical Astronomy Observatories, Tucson, AZ)

    1987-01-01

    The growth of molecular clouds resulting from cloud-cloud collisions and coalescence in the Galactic ring between 4 and 8 kpc are modeled, taking into account the presence of a spiral potential and the mutual cloud-cloud gravitational attraction. The mean lifetime of molecular clouds is determined to be about 200 million years. The clouds are present in both spiral arm and interarm regions, but a spiral pattern in their spatial distribution is clearly discernible, with the more massive clouds showing a stronger correlation with the spiral arms. As viewed from within the Galactic disk, however, it is very difficult to ascertain that the molecular cloud distribution in longitude-velocity space has a spiral pattern. 19 references

  6. Representing Personal Determinants in Causal Structures.

    Science.gov (United States)

    Bandura, Albert

    1984-01-01

    Responds to Staddon's critique of the author's earlier article and addresses issues raised by Staddon's (1984) alternative models of causality. The author argues that it is not the formalizability of causal processes that is the issue but whether cognitive determinants of behavior are reducible to past stimulus inputs in causal structures.…

  7. Spatial Abilities of High-School Students in the Perception of Geologic Structures.

    Science.gov (United States)

    Kali, Yael; Orion, Nir

    1996-01-01

    Characterizes specific spatial abilities required in geology studies through the examination of the performance of high school students in solving structural geology problems on the geologic spatial ability test (GeoSAT). Concludes that visual penetration ability and the ability to perceive the spatial configuration of the structure are…

  8. Capital Structure Determinants and Governance Structure Variety in Franchising

    OpenAIRE

    Jiang, Tao

    2009-01-01

    textabstractThis thesis investigates two questions: the determinants of capital structure in franchising and its subsequent impact on the franchise financing decisions; and the efficient governance structure choice in franchising. We posit that firms franchise in order to benefit from the reduced franchisees’ operational risks by limiting the debt level, such that the franchisor can bear more debt and gain tax-deduction benefits. Specific hypotheses are based on various theories like resource...

  9. The ambivalent effect of lattice structure on a spatial game

    Science.gov (United States)

    Zhang, Hui; Gao, Meng; Li, Zizhen; Maa, Zhihui; Wang, Hailong

    2011-06-01

    The evolution of cooperation is studied in lattice-structured populations, in which each individual who adopts one of the following strategies ‘always defect' (ALLD), ‘tit-for-tat' (TFT), and ‘always cooperate' (ALLC) plays the repeated Prisoner's Dilemma game with its neighbors according to an asynchronous update rule. Computer simulations are applied to analyse the dynamics depending on major parameters. Mathematical analyses based on invasion probability analysis, mean-field approximation, as well as pair approximation are also used. We find that the lattice structure promotes the evolution of cooperation compared with a non-spatial population, this is also confirmed by invasion probability analysis in one dimension. Meanwhile, it also inhibits the evolution of cooperation due to the advantage of being spiteful, which indicates the key role of specific life-history assumptions. Mean-field approximation fails to predict the outcome of computer simulations. Pair approximation is accurate in two dimensions but fails in one dimension.

  10. Spatial Determinants of Import Traffic Distribution At Port Harcourt (Nigeria

    Directory of Open Access Journals (Sweden)

    Soddy I. Inyang

    2013-07-01

    Full Text Available This paper highlights the result of a study carried out to examine the Geographic determinants of import traffic distribution at the Port Harcourt Port. A substantial aspect of the study involved building a regression model to estimate import distribution from the Port. The import function was specified in log-linear form. The adequacy of the model was then tested; this, involved statistical experiments to obtain the R-squared, as well as t and f values. Further test on the adequacy of the nwdel was conducted through diagnostic exercises designed to check for inulticollinedrity and heteroscedasticity, in the data used. Results obtained show that road distance and manufacturing industries are significant Geographic determinants of import Cargo distribution at the study Port. It is therefore important to lake the two variables into account in any policy or planning exercise at Port Harcourt Port.

  11. Spatial Structure of Soil Macrofauna Diversity and Tree Canopy in Riparian Forest of Maroon River

    Directory of Open Access Journals (Sweden)

    Ehsan Sayad

    2017-02-01

    with a mean temperature of 24.5oc. Plant cover, mainly comprises Populus euphratica Olivie and Tamarix arceuthoides Bge and Lycium shawii Roemer & Schultes. Soil macrofauna were sampled using 175 sampling point along parallel transects (perpendicular to the river. The distance between transects was 100m. We considered distance between samples as 50 m. tree canopy were measured in 5* 5 plots. soil macrofauna were extracted from 50 cm×50 cm×10 cm soil monolith by hand-sorting procedure. All soil macrofauna were identified to family level. Evenness (Sheldon index, richness (Menhinich index and diversity (Shannon H’ index by using PAST version 1.39, were determined in each sample. Classical statistical parameters, i.e. mean, standard deviation, coefficient of variation, minimum and maximum, were calculated using SPSS17 software. For analysis of the relationship between Soil macrofauna diversity indices and tree canopy (Total canopy, Populous canopy, Tamarix canopy and Serim canopy we calculated the correlation among soil properties and macrofauna using the Pearson correlation coefficient. Next, to determining the spatial structure, we calculated the semivariances. Semivariance quantifies the spatial dependence of spatially ordered variable values. In order to gather information about the spatial connection between any two variables, and to compare the similarity of their spatial structure patterns, cross-variograms were constructed. Cross-variograms are plots of cross-semivariance against the lag distance. Results and Discussion: Soil macrofauna communities were dominated by earthworm, diplopods, coleoptera, gastropoda, araneae, and insect larvae. Correlation analysis of soil macrofauna and tree canopy indicated weak relationships between them. Weak, but significant relationships were found between macrofauna diversity, evenness, richness and total canopy, Populous canopy and Tamarix canopy (positive. Macrofauna indices and tree canopy(excepted Tamarix canopy were

  12. Geographical ecology of the palms (Arecaceae): determinants of diversity and distributions across spatial scales

    DEFF Research Database (Denmark)

    Eiserhardt, Wolf L.; Svenning, J.-C.; Kissling, W. Daniel

    2011-01-01

    , and dispersal again at all scales. For species richness, climate and dispersal appear to be important at continental to global scales, soil at landscape and broader scales, and topography at landscape and finer scales. Some scale–predictor combinations have not been studied or deserve further attention, e......Background The palm family occurs in all tropical and sub-tropical regions of the world. Palms are of high ecological and economical importance, and display complex spatial patterns of species distributions and diversity. Scope This review summarizes empirical evidence for factors that determine...... palm species distributions, community composition and species richness such as the abiotic environment (climate, soil chemistry, hydrology and topography), the biotic environment (vegetation structure and species interactions) and dispersal. The importance of contemporary vs. historical impacts...

  13. “Markhi” spatial design structure: numerical study of its work under static load

    Directory of Open Access Journals (Sweden)

    Alpatov Vadim

    2016-01-01

    Full Text Available There is a problem of internal stress volume existing for some types of spatial structures and their joint connections. The problem occurs when a massive body is used as a joint connector. It is quite simple to determine tension on this joint connector surface using electric resistive tensometry method. It is not simple though to empirically determine internal tension in the massive body of the connector. To determine internal tension we can use modern calculation systems, such as Ansys, Abaqus, CosmosWorks, Nastran, Autodesk Inventor, Robot Structural Analysis, Bentley STAAD, CSI SAP2000; etc: Internal tension analysis in a massive joint connector makes possible to select both surplus stock parts and shortage stock parts. In this paper the authors base their analysis on both surface and internal tension of MARKHI connector and come up with solutions for its improvement.

  14. Simultaneous determination of protein structure and dynamics

    DEFF Research Database (Denmark)

    Lindorff-Larsen, Kresten; Best, Robert B.; DePristo, M. A.

    2005-01-01

    at the atomic level about the structural and dynamical features of proteins-with the ability of molecular dynamics simulations to explore a wide range of protein conformations. We illustrate the method for human ubiquitin in solution and find that there is considerable conformational heterogeneity throughout......We present a protocol for the experimental determination of ensembles of protein conformations that represent simultaneously the native structure and its associated dynamics. The procedure combines the strengths of nuclear magnetic resonance spectroscopy-for obtaining experimental information...... the protein structure. The interior atoms of the protein are tightly packed in each individual conformation that contributes to the ensemble but their overall behaviour can be described as having a significant degree of liquid-like character. The protocol is completely general and should lead to significant...

  15. Validating spatial structure in canopy water content using geostatistics

    Science.gov (United States)

    Sanderson, E. W.; Zhang, M. H.; Ustin, S. L.; Rejmankova, E.; Haxo, R. S.

    1995-01-01

    Heterogeneity in ecological phenomena are scale dependent and affect the hierarchical structure of image data. AVIRIS pixels average reflectance produced by complex absorption and scattering interactions between biogeochemical composition, canopy architecture, view and illumination angles, species distributions, and plant cover as well as other factors. These scales affect validation of pixel reflectance, typically performed by relating pixel spectra to ground measurements acquired at scales of 1m(exp 2) or less (e.g., field spectra, foilage and soil samples, etc.). As image analysis becomes more sophisticated, such as those for detection of canopy chemistry, better validation becomes a critical problem. This paper presents a methodology for bridging between point measurements and pixels using geostatistics. Geostatistics have been extensively used in geological or hydrogeolocial studies but have received little application in ecological studies. The key criteria for kriging estimation is that the phenomena varies in space and that an underlying controlling process produces spatial correlation between the measured data points. Ecological variation meets this requirement because communities vary along environmental gradients like soil moisture, nutrient availability, or topography.

  16. Spatial structure of ion-scale plasma turbulence

    Directory of Open Access Journals (Sweden)

    Yasuhito eNarita

    2014-03-01

    Full Text Available Spatial structure of small-scale plasma turbulence is studied under different conditions of plasma parameter beta directly in the three-dimensional wave vector domain. Two independent approaches are taken: observations of turbulent magnetic field fluctuations in the solar wind measured by four Cluster spacecraft, and direct numerical simulations of plasma turbulence using the hybrid code AIKEF, both resolving turbulence on the ion kinetic scales. The two methods provide independently evidence of wave vector anisotropy as a function of beta. Wave vector anisotropy is characterized primarily by an extension of the energy spectrum in the direction perpendicular to the large-scale magnetic field. The spectrum is strongly anisotropic at lower values of beta, and is more isotropic at higher values of beta. Cluster magnetic field data analysis also provides evidence of axial asymmetry of the spectrum in the directions around the large-scale field. Anisotropy is interpreted as filament formation as plasma evolves into turbulence. Axial asymmetry is interpreted as the effect of radial expansion of the solar wind from the corona.

  17. Spatial variation of phytoplankton community structure in Daya Bay, China.

    Science.gov (United States)

    Jiang, Zhao-Yu; Wang, You-Shao; Cheng, Hao; Zhang, Jian-Dong; Fei, Jiao

    2015-10-01

    Daya Bay is one of the largest and most important gulfs in the southern coast of China, in the northern part of the South China Sea. The phylogenetic diversity and spatial distribution of phytoplankton from the Daya Bay surface water and the relationship with the in situ water environment were investigated by the clone library of the large subunit of ribulose-1, 5-bisphosphate carboxylase (rbcL) gene. The dominant species of phytoplankton were diatoms and eustigmatophytes, which accounted for 81.9 % of all the clones of the rbcL genes. Prymnesiophytes were widely spread and wide varieties lived in Daya Bay, whereas the quantity was limited. The community structure of phytoplankton was shaped by pH and salinity and the concentration of silicate, phosphorus and nitrite. The phytoplankton biomass was significantly positively affected by phosphorus and nitrite but negatively by salinity and pH. Therefore, the phytoplankton distribution and biomass from Daya Bay were doubly affected by anthropic activities and natural factors.

  18. Mathematical Modeling of the Thermal State of the Spatial Layered Rod Structures

    Directory of Open Access Journals (Sweden)

    I. V. Stankevich

    2016-01-01

    Full Text Available The paper considers the features of finite element technology to determine the temperature state of layered rod structures with complex spatial design. The area of research, on the one hand, is defined by the fact that the rod structures (frames are so-called “skeletal framework” of aviation, machinery, shipbuilding products and structures for industrial construction and an issue of implementation of most research and industrial projects, strongly promising from the practical point of view, depends largely on the level of reliability, bearing capacity, and general performance of its “skeletal framework”. On the other hand, the laminates have a wide range and unique combination of valuable properties such as high strength, corrosion resistance, electrical conductivity, thermal conductivity, heat resistance, abrasion resistance and many others. The use of layered metal compositions allows to increase the reliability and durability of a large range of parts and equipment and to reduce significantly the consumption of high-alloyed steels and nonferrous metals. A temperature field is one of the main factors to determine the expected performance of multilayer rod structures, operation conditions of which imply intensive thermal loading.The paper shows how within a single finite element model that approximates the spatial design of steel structures consisting of multilayer curvilinear rods, at the stage of discretization in space to take into account the thermo-physical properties of all materials, forming layer of each timber. Using the technique described in the paper has been created a complex of application programs that allows us to solve a wide class of scientific and applied problems, and explore the impact of various structural, technological and operational factors on the temperature state of multilayer rod structures. The paper presents research results of the multilayer rod design. It shows that the high conductivity layer available

  19. High Resolution Powder Diffraction and Structure Determination

    International Nuclear Information System (INIS)

    Cox, D. E.

    1999-01-01

    It is clear that high-resolution synchrotrons X-ray powder diffraction is a very powerful and convenient tool for material characterization and structure determination. Most investigations to date have been carried out under ambient conditions and have focused on structure solution and refinement. The application of high-resolution techniques to increasingly complex structures will certainly represent an important part of future studies, and it has been seen how ab initio solution of structures with perhaps 100 atoms in the asymmetric unit is within the realms of possibility. However, the ease with which temperature-dependence measurements can be made combined with improvements in the technology of position-sensitive detectors will undoubtedly stimulate precise in situ structural studies of phase transitions and related phenomena. One challenge in this area will be to develop high-resolution techniques for ultra-high pressure investigations in diamond anvil cells. This will require highly focused beams and very precise collimation in front of the cell down to dimensions of 50 (micro)m or less. Anomalous scattering offers many interesting possibilities as well. As a means of enhancing scattering contrast it has applications not only to the determination of cation distribution in mixed systems such as the superconducting oxides discussed in Section 9.5.3, but also to the location of specific cations in partially occupied sites, such as the extra-framework positions in zeolites, for example. Another possible application is to provide phasing information for ab initio structure solution. Finally, the precise determination of f as a function of energy through an absorption edge can provide useful information about cation oxidation states, particularly in conjunction with XANES data. In contrast to many experiments at a synchrotron facility, powder diffraction is a relatively simple and user-friendly technique, and most of the procedures and software for data analysis

  20. High spatial sampling global mode structure measurements via multichannel reflectometry in NSTX

    Energy Technology Data Exchange (ETDEWEB)

    Crocker, N A; Peebles, W A; Kubota, S; Zhang, J [Department of Physics and Astronomy, University of California-Los Angeles, Los Angeles, CA 90095-7099 (United States); Bell, R E; Fredrickson, E D; Gorelenkov, N N; LeBlanc, B P; Menard, J E; Podesta, M [Princeton Plasma Physics Laboratory, PO Box 451, Princeton, NJ 08543-0451 (United States); Sabbagh, S A [Department of Applied Physics and Applied Mathematics, Columbia University, New York, NY 10027 (United States); Tritz, K [Johns Hopkins University, Baltimore, MD 21218 (United States); Yuh, H [Nova Photonics, Princeton, NJ 08540 (United States)

    2011-10-15

    Global modes-including kinks and tearing modes (f <{approx} 50 kHz), toroidicity-induced Alfven eigenmodes (TAE; f {approx} 50-250 kHz) and global and compressional Alfven eigenmodes (GAE and CAE; f >{approx} 400 kHz)-play critical roles in many aspects of plasma performance. Their investigation on NSTX is aided by an array of fixed-frequency quadrature reflectometers used to determine their radial density perturbation structure. The array has been recently upgraded to 16 channels spanning 30-75 GHz (n{sub cutoff} = (1.1-6.9) x 10{sup 19} m{sup -3} in O-mode), improving spatial sampling and access to the core of H-mode plasmas. The upgrade has yielded significant new results that advance the understanding of global modes in NSTX. The GAE and CAE structures have been measured for the first time in the core of an NSTX high-power (6 MW) beam-heated H-mode plasma. The CAE structure is strongly core-localized, which has important implications for electron thermal transport. The TAE structure has been measured with greatly improved spatial sampling, and measurements of the TAE phase, the first in NSTX, show strong radial variation near the midplane, indicating radial propagation caused by non-ideal MHD effects. Finally, the tearing mode structure measurements provide unambiguous evidence of coupling to an external kink.

  1. Covariance-based Spatial Channel Structure Emulation for MIMO OTA Testing

    DEFF Research Database (Denmark)

    Tsakalaki, Elpiniki; Alrabadi, Osama; Fan, Wei

    2014-01-01

    The paper presents a general framework for recreating the spatial channel structure in a MIMO over-the-air (OTA) multiprobe anechoic chamber testing setup. The idea is to find the power weights of the spatial taps (antenna probes) that minimize a certain distance between the spatial channel covar...

  2. Multiple Scales of Control on the Structure and Spatial Distribution of Woody Vegetation in African Savanna Watersheds.

    Directory of Open Access Journals (Sweden)

    Nicholas R Vaughn

    Full Text Available Factors controlling savanna woody vegetation structure vary at multiple spatial and temporal scales, and as a consequence, unraveling their combined effects has proven to be a classic challenge in savanna ecology. We used airborne LiDAR (light detection and ranging to map three-dimensional woody vegetation structure throughout four savanna watersheds, each contrasting in geologic substrate and climate, in Kruger National Park, South Africa. By comparison of the four watersheds, we found that geologic substrate had a stronger effect than climate in determining watershed-scale differences in vegetation structural properties, including cover, height and crown density. Generalized Linear Models were used to assess the spatial distribution of woody vegetation structural properties, including cover, height and crown density, in relation to mapped hydrologic, topographic and fire history traits. For each substrate and climate combination, models incorporating topography, hydrology and fire history explained up to 30% of the remaining variation in woody canopy structure, but inclusion of a spatial autocovariate term further improved model performance. Both crown density and the cover of shorter woody canopies were determined more by unknown factors likely to be changing on smaller spatial scales, such as soil texture, herbivore abundance or fire behavior, than by our mapped regional-scale changes in topography and hydrology. We also detected patterns in spatial covariance at distances up to 50-450 m, depending on watershed and structural metric. Our results suggest that large-scale environmental factors play a smaller role than is often attributed to them in determining woody vegetation structure in southern African savannas. This highlights the need for more spatially-explicit, wide-area analyses using high resolution remote sensing techniques.

  3. Spatial structure of directional wave spectra in hurricanes

    Science.gov (United States)

    Esquivel-Trava, Bernardo; Ocampo-Torres, Francisco J.; Osuna, Pedro

    2015-01-01

    The spatial structure of the wave field during hurricane conditions is studied using the National Data Buoy Center directional wave buoy data set from the Caribbean Sea and the Gulf of Mexico. The buoy information, comprising the directional wave spectra during the passage of several hurricanes, was referenced to the center of the hurricane using the path of the hurricane, the propagation velocity, and the radius of the maximum winds. The directional wave spectra were partitioned into their main components to quantify the energy corresponding to the observed wave systems and to distinguish between wind-sea and swell. The findings are consistent with those found using remote sensing data (e.g., Scanning Radar Altimeter data). Based on the previous work, the highest waves are found in the right forward quadrant of the hurricane, where the spectral shape tends to become uni-modal, in the vicinity of the region of maximum winds. More complex spectral shapes are observed in distant regions at the front of and in the rear quadrants of the hurricane, where there is a tendency of the spectra to become bi- and tri-modal. The dominant waves generally propagate at significant angles to the wind direction, except in the regions next to the maximum winds of the right quadrants. Evidence of waves generated by concentric eyewalls associated with secondary maximum winds was also found. The frequency spectra display some of the characteristics of the JONSWAP spectrum adjusted by Young (J Geophys Res 111:8020, 2006); however, at the spectral peak, the similarity with the Pierson-Moskowitz spectrum is clear. These results establish the basis for the use in assessing the ability of numerical models to simulate the wave field in hurricanes.

  4. Is the spatial distribution of mankind's most basic economic traits determined by climate and soil alone?

    Science.gov (United States)

    Beck, Jan; Sieber, Andrea

    2010-05-05

    Several authors, most prominently Jared Diamond (1997, Guns, Germs and Steel), have investigated biogeographic determinants of human history and civilization. The timing of the transition to an agricultural lifestyle, associated with steep population growth and consequent societal change, has been suggested to be affected by the availability of suitable organisms for domestication. These factors were shown to quantitatively explain some of the current global inequalities of economy and political power. Here, we advance this approach one step further by looking at climate and soil as sole determining factors. As a simplistic 'null model', we assume that only climate and soil conditions affect the suitability of four basic landuse types - agriculture, sedentary animal husbandry, nomadic pastoralism and hunting-and-gathering. Using ecological niche modelling (ENM), we derive spatial predictions of the suitability for these four landuse traits and apply these to the Old World and Australia. We explore two aspects of the properties of these predictions, conflict potential and population density. In a calculation of overlap of landuse suitability, we map regions of potential conflict between landuse types. Results are congruent with a number of real, present or historical, regions of conflict between ethnic groups associated with different landuse traditions. Furthermore, we found that our model of agricultural suitability explains a considerable portion of population density variability. We mapped residuals from this correlation, finding geographically highly structured deviations that invite further investigation. We also found that ENM of agricultural suitability correlates with a metric of local wealth generation (Gross Domestic Product, Purchasing Power Parity). From simplified assumptions on the links between climate, soil and landuse we are able to provide good predictions on complex features of human geography. The spatial distribution of deviations from ENM

  5. Is the Spatial Distribution of Mankind's Most Basic Economic Traits Determined by Climate and Soil Alone?

    Science.gov (United States)

    Beck, Jan; Sieber, Andrea

    2010-01-01

    Background Several authors, most prominently Jared Diamond (1997, Guns, Germs and Steel), have investigated biogeographic determinants of human history and civilization. The timing of the transition to an agricultural lifestyle, associated with steep population growth and consequent societal change, has been suggested to be affected by the availability of suitable organisms for domestication. These factors were shown to quantitatively explain some of the current global inequalities of economy and political power. Here, we advance this approach one step further by looking at climate and soil as sole determining factors. Methodology/Principal Findings As a simplistic ‘null model’, we assume that only climate and soil conditions affect the suitability of four basic landuse types – agriculture, sedentary animal husbandry, nomadic pastoralism and hunting-and-gathering. Using ecological niche modelling (ENM), we derive spatial predictions of the suitability for these four landuse traits and apply these to the Old World and Australia. We explore two aspects of the properties of these predictions, conflict potential and population density. In a calculation of overlap of landuse suitability, we map regions of potential conflict between landuse types. Results are congruent with a number of real, present or historical, regions of conflict between ethnic groups associated with different landuse traditions. Furthermore, we found that our model of agricultural suitability explains a considerable portion of population density variability. We mapped residuals from this correlation, finding geographically highly structured deviations that invite further investigation. We also found that ENM of agricultural suitability correlates with a metric of local wealth generation (Gross Domestic Product, Purchasing Power Parity). Conclusions/Significance From simplified assumptions on the links between climate, soil and landuse we are able to provide good predictions on complex features

  6. Environmental and Spatial Influences on Biogeography and Community Structure of Benthic Diatoms

    Science.gov (United States)

    Plante, C.; Hill-Spanik, K.; Lowry, J.

    2016-02-01

    Several theoretical and practical reasons suggest that benthic microalgae could be useful bioindicators. For instance, an ideal indicator species or community would be associated with a given habitat due to local physical conditions or biotic interactions (i.e., `environmental filtering'), not due to dispersal limitation. Due to their small size, immense abundances, and reliance on passive dispersal, the popular notion about micro-organisms is that `Everything is everywhere, but, the environment selects' (Baas-Becking 1934). Although much recent research concerning planktonic bacteria and dispersal limitation has been conducted, very little in this regard is known about microeukaryotes, especially benthic microbes. The purpose of our study was to identify and compare spatial and environmental influences on benthic diatom community structure and biogeography. In summer 2015, sediment was sampled at various spatial scales from four barrier island beaches in South Carolina, USA, and high-throughput (Ion Torrent) DNA sequencing was used to characterize diatom assemblages. ANOSIM and principal coordinates analysis revealed that communities were statistically distinct on the four islands. Community dissimilarity was compared to both spatial distance and environmental differences to determine potential influences of these variables on community structure. We found that geographic distance had the strongest correlation with community similarity, with and without one anomalous location, while differences in temperature (air, water, and sediment), nutrients, organic matter, and turbidity also had significant but weaker relationships with community structure. Surprisingly, air temperature, which changes on very short time scales, appeared to be the environmental factor most strongly related to diatom species composition, potentially implicating some unmeasured variable (e.g., cloud cover). However, we also found that temperature and geographic distance were strongly

  7. Single-acquisition method for simultaneous determination of extrinsic gamma-camera sensitivity and spatial resolution

    Energy Technology Data Exchange (ETDEWEB)

    Santos, J.A.M. [Servico de Fisica Medica, Instituto Portugues de Oncologia Francisco Gentil do Porto, E.P.E., Rua Dr. Antonio Bernardino de Almeida, 4200-072 Porto (Portugal)], E-mail: a.miranda@portugalmail.pt; Sarmento, S. [Servico de Fisica Medica, Instituto Portugues de Oncologia Francisco Gentil do Porto, E.P.E., Rua Dr. Antonio Bernardino de Almeida, 4200-072 Porto (Portugal); Alves, P.; Torres, M.C. [Departamento de Fisica da Universidade do Porto, Rua do Campo Alegre 687, 4169-007 Porto (Portugal); Bastos, A.L. [Servico de Medicina Nuclear, Instituto Portugues de Oncologia Francisco Gentil do Porto, E.P.E., Rua Dr. Antonio Bernardino de Almeida, 4200-072 Porto (Portugal); Ponte, F. [Servico de Fisica Medica, Instituto Portugues de Oncologia Francisco Gentil do Porto, E.P.E., Rua Dr. Antonio Bernardino de Almeida, 4200-072 Porto (Portugal)

    2008-01-15

    A new method for measuring simultaneously both the extrinsic sensitivity and spatial resolution of a gamma-camera in a single planar acquisition was implemented. A dual-purpose phantom (SR phantom; sensitivity/resolution) was developed, tested and the results compared with other conventional methods used for separate determination of these two important image quality parameters. The SR phantom yielded reproducible and accurate results, allowing an immediate visual inspection of the spatial resolution as well as the quantitative determination of the contrast for six different spatial frequencies. It also proved to be useful in the estimation of the modulation transfer function (MTF) of the image formation collimator/detector system at six different frequencies and can be used to estimate the spatial resolution as function of the direction relative to the digital matrix of the detector.

  8. Single-acquisition method for simultaneous determination of extrinsic gamma-camera sensitivity and spatial resolution

    International Nuclear Information System (INIS)

    Santos, J.A.M.; Sarmento, S.; Alves, P.; Torres, M.C.; Bastos, A.L.; Ponte, F.

    2008-01-01

    A new method for measuring simultaneously both the extrinsic sensitivity and spatial resolution of a gamma-camera in a single planar acquisition was implemented. A dual-purpose phantom (SR phantom; sensitivity/resolution) was developed, tested and the results compared with other conventional methods used for separate determination of these two important image quality parameters. The SR phantom yielded reproducible and accurate results, allowing an immediate visual inspection of the spatial resolution as well as the quantitative determination of the contrast for six different spatial frequencies. It also proved to be useful in the estimation of the modulation transfer function (MTF) of the image formation collimator/detector system at six different frequencies and can be used to estimate the spatial resolution as function of the direction relative to the digital matrix of the detector

  9. Spatial organisation: development, structure and approximation of geographical systems

    Czech Academy of Sciences Publication Activity Database

    Klapka, Pavel; Frantál, Bohumil; Halás, M.; Kunc, Josef

    2010-01-01

    Roč. 18, č. 3 (2010), s. 53-65 ISSN 1210-8812 R&D Projects: GA AV ČR KJB300860901 Grant - others:GA ČR(CZ) GA403/09/0885; GA AV ČR(CZ) IAA301670901 Program:GA Institutional research plan: CEZ:AV0Z30860518 Keywords : spatial organisation * spatial behaviour * quantitative methods Subject RIV: DE - Earth Magnetism, Geodesy, Geography

  10. Determinants of the distribution and concentration of biogas production in Germany. A spatial econometric analysis

    International Nuclear Information System (INIS)

    Scholz, Lukas

    2015-01-01

    The biogas production in Germany is characterized by a heterogeneous distribution and the formation of regional centers. In the present study the determinants of the spatial distribution and concentration are analyzed with methods of spatial statistics and spatial econometrics. In addition to the consideration of ''classic'' site factors of agricultural production, the analysis here focuses on the possible relevance of agglomeration effects. The results of the work contribute to a better understanding of the regional distribution and concentration of the biogas production in Germany. [de

  11. Strongyloides stercoralis and hookworm co-infection: spatial distribution and determinants in Preah Vihear Province, Cambodia.

    Science.gov (United States)

    Forrer, Armelle; Khieu, Virak; Schär, Fabian; Vounatsou, Penelope; Chammartin, Frédérique; Marti, Hanspeter; Muth, Sinuon; Odermatt, Peter

    2018-01-12

    Strongyloides stercoralis and hookworm are two soil-transmitted helminths (STH) that are highly prevalent in Cambodia. Strongyloides stercoralis causes long-lasting infections and significant morbidity but is largely neglected, while hookworm causes the highest public health burden among STH. The two parasites have the same infection route, i.e. skin penetration. The extent of co-distribution, which could result in potential high co-morbidities, is unknown in highly endemic settings like Cambodia. The aim of this study was to predict the spatial distribution of S. stercoralis-hookworm co-infection risk and to investigate determinants of co-infection in Preah Vihear Province, North Cambodia. A cross-sectional survey was conducted in 2010 in 60 villages of Preah Vihear Province. Diagnosis was performed on two stool samples, using combined Baermann technique and Koga agar culture plate for S. stercoralis and Kato-Katz technique for hookworm. Bayesian multinomial geostatistical models were used to assess demographic, socioeconomic, and behavioural determinants of S. stercoralis-hookworm co-infection and to predict co-infection risk at non-surveyed locations. Of the 2576 participants included in the study, 48.6% and 49.0% were infected with S. stercoralis and hookworm, respectively; 43.8% of the cases were co-infections. Females, preschool aged children, adults aged 19-49 years, and participants who reported regularly defecating in toilets, systematically boiling drinking water and having been treated with anthelmintic drugs had lower odds of co-infection. While S. stercoralis infection risk did not appear to be spatially structured, hookworm mono-infection and co-infection exhibited spatial correlation at about 20 km. Co-infection risk was positively associated with longer walking distances to a health centre and exhibited a small clustering tendency. The association was only partly explained by climatic variables, suggesting a role for underlying factors, such as

  12. Characteristics of Spatial Structural Patterns and Temporal Variability of Annual Precipitation in Ningxia

    Institute of Scientific and Technical Information of China (English)

    2011-01-01

    [Objective] The aim was to study the characteristics of the spatial structural patterns and temporal variability of annual precipitation in Ningxia.[Method] Using rotated empirical orthogonal function,the precipitation concentration index,wavelet analysis and Mann-Kendall rank statistic method,the characteristics of precipitation on the spatial-temporal variability and trend were analyzed by the monthly precipitation series in Ningxia during 1951-2008.[Result] In Ningxia,the spatial structural patterns of a...

  13. Visualisation and research strategy for computational spatial and structural design interaction

    NARCIS (Netherlands)

    Peeten, D.; Hofmeyer, H.; Thabet, W

    2010-01-01

    A research engine is under development for studying the interaction of spatial and structural design processes. The design processes are being implemented as two separate configurable transformation steps; a conversion step and an optimisation step. A significant part of the spatial-to-structural

  14. Spatial pattern of Baccharis platypoda shrub as determined by sex and life stages

    Science.gov (United States)

    Fonseca, Darliana da Costa; de Oliveira, Marcio Leles Romarco; Pereira, Israel Marinho; Gonzaga, Anne Priscila Dias; de Moura, Cristiane Coelho; Machado, Evandro Luiz Mendonça

    2017-11-01

    Spatial patterns of dioecious species can be determined by their nutritional requirements and intraspecific competition, apart from being a response to environmental heterogeneity. The aim of the study was to evaluate the spatial pattern of populations of a dioecious shrub reporting to sex and reproductive stage patterns of individuals. Sampling was carried out in three areas located in the meridional portion of Serra do Espinhaço, where in individuals of the studied species were mapped. The spatial pattern was determined through O-ring analysis and Ripley's K-function and the distribution of individuals' frequencies was verified through x2 test. Populations in two areas showed an aggregate spatial pattern tending towards random or uniform according to the observed scale. Male and female adults presented an aggregate pattern at smaller scales, while random and uniform patterns were verified above 20 m for individuals of both sexes of the areas A2 and A3. Young individuals presented an aggregate pattern in all areas and spatial independence in relation to adult individuals, especially female plants. The interactions between individuals of both genders presented spatial independence with respect to spatial distribution. Baccharis platypoda showed characteristics in accordance with the spatial distribution of savannic and dioecious species, whereas the population was aggregated tending towards random at greater spatial scales. Young individuals showed an aggregated pattern at different scales compared to adults, without positive association between them. Female and male adult individuals presented similar characteristics, confirming that adult individuals at greater scales are randomly distributed despite their distinct preferences for environments with moisture variation.

  15. Genetic Diversity and Spatial Genetic Structure of the Grassland Perennial Saxifraga granulata along Two River Systems.

    Directory of Open Access Journals (Sweden)

    Sascha van der Meer

    Full Text Available Due to changes in land use, the natural habitats of an increasing number of plant species have become more and more fragmented. In landscapes that consist of patches of suitable habitat, the frequency and extent of long-distance seed dispersal can be expected to be an important factor determining local genetic diversity and regional population structure of the remaining populations. In plant species that are restricted to riparian habitats, rivers can be expected to have a strong impact on the dynamics and spatial genetic structure of populations as they may enable long-distance seed dispersal and thus maintain gene flow between fragmented populations. In this study, we used polymorphic microsatellite markers to investigate the genetic diversity and the spatial genetic structure of 28 populations of Saxifraga granulata along two rivers in central Belgium. We hypothesized that rivers might be essential for gene flow among increasingly isolated populations of this species. Genetic diversity was high (HS = 0.68, which to a certain extent can be explained by the octoploid nature of S. granulata in the study area. Populations along the Dijle and Demer rivers were also highly differentiated (G"ST = 0.269 and 0.164 and DEST = 0.190 and 0.124, respectively and showed significant isolation-by-distance, indicating moderate levels of gene flow primarily between populations that are geographically close to each other. Along the river Demer population genetic diversity was higher upstream than downstream, suggesting that seed dispersal via the water was not the primary mode of dispersal. Overall, these results indicate that despite increasing fragmentation populations along both rivers were highly genetically diverse. The high ploidy level and longevity of S. granulata have most likely buffered negative effects of fragmentation on genetic diversity and the spatial genetic structure of populations in riparian grasslands.

  16. Extinction threshold for spatial forest dynamics with height structure.

    Science.gov (United States)

    Garcia-Domingo, Josep L; Saldaña, Joan

    2011-05-07

    We present a pair-approximation model for spatial forest dynamics defined on a regular lattice. The model assumes three possible states for a lattice site: empty (gap site), occupied by an immature tree, and occupied by a mature tree, and considers three nonlinearities in the dynamics associated to the processes of light interference, gap expansion, and recruitment. We obtain an expression of the basic reproduction number R(0) which, in contrast to the one obtained under the mean-field approach, uses information about the spatial arrangement of individuals close to extinction. Moreover, we analyze the corresponding survival-extinction transition of the forest and the spatial correlations among gaps, immature and mature trees close to this critical point. Predictions of the pair-approximation model are compared with those of a cellular automaton. Copyright © 2011 Elsevier Ltd. All rights reserved.

  17. Structure determination by X-ray crystallography

    CERN Document Server

    Ladd, M F C

    1977-01-01

    Crystallography may be described as the science of the structure of materi­ als, using this word in its widest sense, and its ramifications are apparent over a broad front of current scientific endeavor. It is not surprising, therefore, to find that most universities offer some aspects of crystallography in their undergraduate courses in the physical sciences. It is the principal aim of this book to present an introduction to structure determination by X-ray crystal­ lography that is appropriate mainly to both final-year undergraduate studies in crystallography, chemistry, and chemical physics, and introductory post­ graduate work in this area of crystallography. We believe that the book will be of interest in other disciplines, such as physics, metallurgy, biochemistry, and geology, where crystallography has an important part to play. In the space of one book, it is not possible either to cover all aspects of crystallography or to treat all the subject matter completely rigorously. In particular, certain ...

  18. Compositional divergence and convergence in local communities and spatially structured landscapes.

    Directory of Open Access Journals (Sweden)

    Tancredi Caruso

    Full Text Available Community structure depends on both deterministic and stochastic processes. However, patterns of community dissimilarity (e.g. difference in species composition are difficult to interpret in terms of the relative roles of these processes. Local communities can be more dissimilar (divergence than, less dissimilar (convergence than, or as dissimilar as a hypothetical control based on either null or neutral models. However, several mechanisms may result in the same pattern, or act concurrently to generate a pattern, and much research has recently been focusing on unravelling these mechanisms and their relative contributions. Using a simulation approach, we addressed the effect of a complex but realistic spatial structure in the distribution of the niche axis and we analysed patterns of species co-occurrence and beta diversity as measured by dissimilarity indices (e.g. Jaccard index using either expectations under a null model or neutral dynamics (i.e., based on switching off the niche effect. The strength of niche processes, dispersal, and environmental noise strongly interacted so that niche-driven dynamics may result in local communities that either diverge or converge depending on the combination of these factors. Thus, a fundamental result is that, in real systems, interacting processes of community assembly can be disentangled only by measuring traits such as niche breadth and dispersal. The ability to detect the signal of the niche was also dependent on the spatial resolution of the sampling strategy, which must account for the multiple scale spatial patterns in the niche axis. Notably, some of the patterns we observed correspond to patterns of community dissimilarities previously observed in the field and suggest mechanistic explanations for them or the data required to solve them. Our framework offers a synthesis of the patterns of community dissimilarity produced by the interaction of deterministic and stochastic determinants of community

  19. Spatial Patterns in Herbivory on a Coral Reef Are Influenced by Structural Complexity but Not by Algal Traits

    Science.gov (United States)

    Vergés, Adriana; Vanderklift, Mathew A.; Doropoulos, Christopher; Hyndes, Glenn A.

    2011-01-01

    Background Patterns of herbivory can alter the spatial structure of ecosystems, with important consequences for ecosystem functions and biodiversity. While the factors that drive spatial patterns in herbivory in terrestrial systems are well established, comparatively less is known about what influences the distribution of herbivory in coral reefs. Methodology and Principal Findings We quantified spatial patterns of macroalgal consumption in a cross-section of Ningaloo Reef (Western Australia). We used a combination of descriptive and experimental approaches to assess the influence of multiple macroalgal traits and structural complexity in establishing the observed spatial patterns in macroalgal herbivory, and to identify potential feedback mechanisms between herbivory and macroalgal nutritional quality. Spatial patterns in macroalgal consumption were best explained by differences in structural complexity among habitats. The biomass of herbivorous fish, and rates of herbivory were always greater in the structurally-complex coral-dominated outer reef and reef flat habitats, which were also characterised by high biomass of herbivorous fish, low cover and biomass of macroalgae and the presence of unpalatable algae species. Macroalgal consumption decreased to undetectable levels within 75 m of structurally-complex reef habitat, and algae were most abundant in the structurally-simple lagoon habitats, which were also characterised by the presence of the most palatable algae species. In contrast to terrestrial ecosystems, herbivory patterns were not influenced by the distribution, productivity or nutritional quality of resources (macroalgae), and we found no evidence of a positive feedback between macroalgal consumption and the nitrogen content of algae. Significance This study highlights the importance of seascape-scale patterns in structural complexity in determining spatial patterns of macroalgal consumption by fish. Given the importance of herbivory in maintaining the

  20. Spatial patterns in herbivory on a coral reef are influenced by structural complexity but not by algal traits.

    Directory of Open Access Journals (Sweden)

    Adriana Vergés

    2011-02-01

    Full Text Available Patterns of herbivory can alter the spatial structure of ecosystems, with important consequences for ecosystem functions and biodiversity. While the factors that drive spatial patterns in herbivory in terrestrial systems are well established, comparatively less is known about what influences the distribution of herbivory in coral reefs.We quantified spatial patterns of macroalgal consumption in a cross-section of Ningaloo Reef (Western Australia. We used a combination of descriptive and experimental approaches to assess the influence of multiple macroalgal traits and structural complexity in establishing the observed spatial patterns in macroalgal herbivory, and to identify potential feedback mechanisms between herbivory and macroalgal nutritional quality. Spatial patterns in macroalgal consumption were best explained by differences in structural complexity among habitats. The biomass of herbivorous fish, and rates of herbivory were always greater in the structurally-complex coral-dominated outer reef and reef flat habitats, which were also characterised by high biomass of herbivorous fish, low cover and biomass of macroalgae and the presence of unpalatable algae species. Macroalgal consumption decreased to undetectable levels within 75 m of structurally-complex reef habitat, and algae were most abundant in the structurally-simple lagoon habitats, which were also characterised by the presence of the most palatable algae species. In contrast to terrestrial ecosystems, herbivory patterns were not influenced by the distribution, productivity or nutritional quality of resources (macroalgae, and we found no evidence of a positive feedback between macroalgal consumption and the nitrogen content of algae.This study highlights the importance of seascape-scale patterns in structural complexity in determining spatial patterns of macroalgal consumption by fish. Given the importance of herbivory in maintaining the ability of coral reefs to reorganise and

  1. Determinants of developing widened spatial QRS-T angle in HIV-infected individuals

    DEFF Research Database (Denmark)

    Dawood, Farah Z; Roediger, Mollie P; Grandits, Greg

    2014-01-01

    BACKGROUND: A widened electrocardiographic spatial QRS-T angle has been shown to be predictive of cardiovascular disease in HIV-infected individuals. However, determinants and risk factors of developing widened QRS-T angle over time in this population remain unknown. METHODS AND RESULTS: Spatial...... QRS-T angle was automatically measured from standard electrocardiogram of 1444 HIV-infected individuals without baseline widened spatial QRS-T angle from the Strategies for Management of Antiretroviral Therapy [SMART], a clinical trial comparing two antiretroviral treatment strategies [Drug...... Conservation (DC) vs. Viral Suppression (VS)]. Conditional logistic regression analysis was used to examine the association between baseline characteristics and incident widened spatial QRS-T angle (a new angle>93° in males and>74° in females). During 2544 person-years of follow-up, 199 participants developed...

  2. Estimate of energy density on CYCLOPS spatial filter pinhole structure

    International Nuclear Information System (INIS)

    Guch, S. Jr.

    1974-01-01

    The inclusion of a spatial filter between the B and C stages in CYCLOPS to reduce the effects of small-scale beam self-focusing is discussed. An estimate is made of the energy density to which the pinhole will be subjected, and the survivability of various pinhole materials and designs is discussed

  3. The Structure of Spatial Ability Items: A Faceted Analysis.

    Science.gov (United States)

    Guttman, Ruth; Shoham, Ilana

    1982-01-01

    Eight spatial tests assembled with a mapping sentence of four content facets (rule type, dimensionality, presence or absence of rotation, and test format) were administered to 800 individuals. Smallest Space Analysis of an intercorrelation matrix yielded three facets which formed distinct regions in a two-dimensional projection of a…

  4. Structural Synthesis of 3-DoF Spatial Fully Parallel Manipulators

    Directory of Open Access Journals (Sweden)

    Alfonso Hernandez

    2014-07-01

    Full Text Available In this paper, the architectures of three degrees of freedom (3-DoF spatial, fully parallel manipulators (PMs, whose limbs are structurally identical, are obtained systematically. To do this, the methodology followed makes use of the concepts of the displacement group theory of rigid body motion. This theory works with so-called ‘motion generators’. That is, every limb is a kinematic chain that produces a certain type of displacement in the mobile platform or end-effector. The laws of group algebra will determine the actual motion pattern of the end-effector. The structural synthesis is a combinatorial process of different kinematic chains’ topologies employed in order to get all of the 3-DoF motion pattern possibilities in the end-effector of the fully parallel manipulator.

  5. Spatial pattern of structural ageing in eastern Croatia: evolution and explanations

    Directory of Open Access Journals (Sweden)

    Marijan Jukic

    2015-11-01

    Full Text Available This article aims to examine the ageing situation and social policy issues in the Osijek-Baranja County of eastern Croatia. Using historical evidence from census data, research suggests that the evolution of the ageing pattern has been mainly determined by such factors as development of the transport system, changes in political-territorial organisation, supply of jobs in the cities, deagrarianisation and a domestic war in the 1990s. The increased importance of urban centres, through planned industrialisation and administrative centralisation, has accelerated and intensified rural-tourban migration. Consequently, the spatial pattern of structural ageing has been substantially affected. A significant variation was found in urban and rural areas and also within sub-regional units. The findings suggest that the evolution of spatial disparities in the ageing pattern is because of unplanned migration; spatial differences in the level of socio-economic development; the influence of tradition, such as higher fertility rates historically in some areas; and suburbanisation, notably around the city of Osijek. The article concludes that ageing is affecting the country's economic growth and the formal and informal social support systems, including the provision of resources for older citizens in the endangered areas.

  6. The cause of spatial structure in solar He I 1083 nm multiplet images

    Science.gov (United States)

    Leenaarts, Jorrit; Golding, Thomas; Carlsson, Mats; Libbrecht, Tine; Joshi, Jayant

    2016-10-01

    Context. The He I 1083 nm is a powerful diagnostic for inferring properties of the upper solar chromosphere, in particular for the magnetic field. The basic formation of the line in one-dimensional models is well understood, but the influence of the complex three-dimensional structure of the chromosphere and corona has however never been investigated. This structure must play an essential role because images taken in He I 1083 nm show structures with widths down to 100 km. Aims: We aim to understand the effect of the three-dimensional temperature and density structure in the solar atmosphere on the formation of the He I 1083 nm line. Methods: We solved the non-LTE radiative transfer problem assuming statistical equilibrium for a simple nine-level helium atom that nevertheless captures all essential physics. As a model atmosphere we used a snapshot from a 3D radiation-MHD simulation computed with the Bifrost code. Ionising radiation from the corona was self-consistently taken into account. Results: The emergent intensity in the He I 1083 nm is set by the source function and the opacity in the upper chromosphere. The former is dominated by scattering of photospheric radiation and does not vary much with spatial location. The latter is determined by the photonionisation rate in the He I ground state continuum, as well as the electron density in the chromosphere. The spatial variation of the flux of ionising radiation is caused by the spatially-structured emissivity of the ionising photons from material at T ≈ 100 kK in the transition region. The hotter coronal material produces more ionising photons, but the resulting radiation field is smooth and does not lead to small-scale variation of the UV flux. The corrugation of the transition region further increases the spatial variation of the amount of UV radiation in the chromosphere. Finally we find that variations in the chromospheric electron density also cause strong variation in He I 1083 nm opacity. We compare our

  7. Spatial-structural analysis of leafless woody riparian vegetation for hydraulic considerations

    Science.gov (United States)

    Weissteiner, Clemens; Jalonen, Johanna; Järvelä, Juha; Rauch, Hans Peter

    2013-04-01

    Woody riparian vegetation is a vital element of riverine environments. On one hand woody riparian vegetation has to be taken into account from a civil engineering point of view due to boundary shear stress and vegetation drag. On the other hand it has to be considered from a river ecological point of view due to shadowing effects and as a source of organic material for aquatic habitats. In hydrodynamic and hydro-ecological studies the effects of woody riparian vegetation on flow patterns are usually investigated on a very detailed level. On the contrary vegetation elements and their spatial patterns are generally analysed and discussed on the basis of an integral approach measuring for example basal diameters, heights and projected plant areas. For a better understanding of the influence of woody riparian vegetation on turbulent flow and on river ecology, it is essential to record and analyse plant data sets on the same level of quality as for hydrodynamic or hydro-ecologic purposes. As a result of the same scale of the analysis it is possible to incorporate riparian vegetation as a sub-model in the hydraulic analysis. For plant structural components, such as branches on different topological levels it is crucial to record plant geometrical parameters describing the habitus of the plant on branch level. An exact 3D geometrical model of real plants allows for an extraction of various spatial-structural plant parameters. In addition, allometric relationships help to summarize and describe plant traits of riparian vegetation. This paper focuses on the spatial-structural composition of leafless riparia woddy vegetation. Structural and spatial analyses determine detailed geometric properties of the structural components of the plants. Geometrical and topological parameters were recorded with an electro-magnetic scanning device. In total, 23 plants (willows, alders and birches) were analysed in the study. Data were recorded on branch level, which allowed for the

  8. The Importance of Temporal and Spatial Vegetation Structure Information in Biotope Mapping Schemes: A Case Study in Helsingborg, Sweden

    Science.gov (United States)

    Gao, Tian; Qiu, Ling; Hammer, Mårten; Gunnarsson, Allan

    2012-02-01

    Temporal and spatial vegetation structure has impact on biodiversity qualities. Yet, current schemes of biotope mapping do only to a limited extend incorporate these factors in the mapping. The purpose of this study is to evaluate the application of a modified biotope mapping scheme that includes temporal and spatial vegetation structure. A refined scheme was developed based on a biotope classification, and applied to a green structure system in Helsingborg city in southern Sweden. It includes four parameters of vegetation structure: continuity of forest cover, age of dominant trees, horizontal structure, and vertical structure. The major green structure sites were determined by interpretation of panchromatic aerial photographs assisted with a field survey. A set of biotope maps was constructed on the basis of each level of modified classification. An evaluation of the scheme included two aspects in particular: comparison of species richness between long-continuity and short-continuity forests based on identification of woodland continuity using ancient woodland indicators (AWI) species and related historical documents, and spatial distribution of animals in the green space in relation to vegetation structure. The results indicate that (1) the relationship between forest continuity: according to verification of historical documents, the richness of AWI species was higher in long-continuity forests; Simpson's diversity was significantly different between long- and short-continuity forests; the total species richness and Shannon's diversity were much higher in long-continuity forests shown a very significant difference. (2) The spatial vegetation structure and age of stands influence the richness and abundance of the avian fauna and rabbits, and distance to the nearest tree and shrub was a strong determinant of presence for these animal groups. It is concluded that continuity of forest cover, age of dominant trees, horizontal and vertical structures of vegetation

  9. Methods and apparatus for determining the spatial distribution of a radioactive material

    International Nuclear Information System (INIS)

    Todd, R.W.

    1975-01-01

    The spatial distribution of a radioactive material is determined by locating the positions of and energy losses resulting from Compton interactions which occur in a detector as a result of gamma photons emitted by the radioactive material, which may, for example, have been administered to a patient for medical diagnostic investigation. (auth)

  10. Spatial channel theory: A technique for determining the directional flow of radiation through reactor systems

    International Nuclear Information System (INIS)

    Williams, M.L.; Engle, W.W.

    1977-01-01

    A method is introduced for determining streaming paths through a non-multiplying medium. The concepts of a ''response continuum'' and a pseudo-particle called a contribution are developed to describe the spatial channels through which response flows from a source to a detector. An example application of channel theory to complex shield analysis is cited

  11. Determinants of beta diversity: the relative importance of environmental and spatial processes in structuring phytoplankton communities in an Amazonian floodplain Determinantes da diversidade beta: a importância relativa de processos ambientais e espaciais na estrutura de comunidades fitoplanctônicas de uma planície de inundação amazônica

    Directory of Open Access Journals (Sweden)

    Ina de Souza Nogueira

    2010-09-01

    Full Text Available AIM: Beta diversity is defined as the change in species composition along environmental gradients, and in the present study, we investigated the influence of local (i.e., environmental and regional (i.e., dispersal factors in community structure. The aims of this study were to evaluate the beta diversity of phytoplankton communities in the Curuaí floodplain and to determine the relative importance of environmental and spatial processes in shaping phytoplankton community structure; METHOD: The phytoplankton communities were sampled in 16 lakes of the Curuaí floodplain (Amazon Basin during high-water periods in 2002 and 2003. We used partial redundancy analysis (pRDA to evaluate the pure effect of environmental (six variables and spatial (spatial filter variability on phytoplankton community composition; RESULTS: There were 156 taxa recorded in the two study years, including 122 algae species in 2002 and 66 algae species in 2003. The beta diversity that we measured (βSIM index was 0.889 in 2002 and 0.789 in 2003. The partitioning variation demonstrated that the majority of variation in phytoplankton community structure was not significantly explained by pure environmental and pure spatial components. However, environmental variables presented a larger coefficient of determination than the spatial variable; CONCLUSION: Other factors than those we measured in this study, such as local variables (i.e., biotic interactions, hydrology, etc. and stochastic events, affected the absence of significant results in our data. Therefore, we suggest that additional variables, such as biological interactions and other local factors, should be considered in this type of analysis to increase its explanatory power for understanding the variation of diversity in these communities.OBJETIVO: A diversidade beta é definida como as mudanças na composição de espécies ao longo de um gradiente ambiental, e atualmente, ecólogos têm investigado a influência de

  12. The Relative Importance of Spatial Versus Temporal Structure in the Perception of Biological Motion: An Event-Related Potential Study

    Science.gov (United States)

    Hirai, Masahiro; Hiraki, Kazuo

    2006-01-01

    We investigated how the spatiotemporal structure of animations of biological motion (BM) affects brain activity. We measured event-related potentials (ERPs) during the perception of BM under four conditions: normal spatial and temporal structure; scrambled spatial and normal temporal structure; normal spatial and scrambled temporal structure; and…

  13. Study on spatial structure of retailing based on GIS in the city of Wuhan

    Science.gov (United States)

    Liu, Cheng-liang; Tian, Ying

    2008-10-01

    With the agility of market economy, the characteristic of market spatial structure becomes more complex since the reformation and open policy. The spatial structure has broken through the traditional framework which is non-equilibriums and scattered, and represented such modern development character as diversification, grade, network, and non-equilibrium. This paper chooses 200 stochastic retailing stores whose acreages all exceed 40m2 in the four circles of Wuhan city, after the analysis of spatial difference on acreages, number, population density, and manage forms with GIS spatial methods, and makes a conclusion that the retailing spatial structure of Wuhan city has took on figure of rating circle wholly and frame of centralization-diffusion and enchasing partially; as location is concerned, centralization and diffusion takes place simultaneously, has behaved that retailing concentrated in heartland of city with more favorable traffic and market location by the means of market infiltration, and distributed in suburb more dispersive by market monopoly.

  14. Food-web structure of seagrass communities across different spatial scales and human impacts.

    Science.gov (United States)

    Coll, Marta; Schmidt, Allison; Romanuk, Tamara; Lotze, Heike K

    2011-01-01

    Seagrass beds provide important habitat for a wide range of marine species but are threatened by multiple human impacts in coastal waters. Although seagrass communities have been well-studied in the field, a quantification of their food-web structure and functioning, and how these change across space and human impacts has been lacking. Motivated by extensive field surveys and literature information, we analyzed the structural features of food webs associated with Zostera marina across 16 study sites in 3 provinces in Atlantic Canada. Our goals were to (i) quantify differences in food-web structure across local and regional scales and human impacts, (ii) assess the robustness of seagrass webs to simulated species loss, and (iii) compare food-web structure in temperate Atlantic seagrass beds with those of other aquatic ecosystems. We constructed individual food webs for each study site and cumulative webs for each province and the entire region based on presence/absence of species, and calculated 16 structural properties for each web. Our results indicate that food-web structure was similar among low impact sites across regions. With increasing human impacts associated with eutrophication, however, food-web structure show evidence of degradation as indicated by fewer trophic groups, lower maximum trophic level of the highest top predator, fewer trophic links connecting top to basal species, higher fractions of herbivores and intermediate consumers, and higher number of prey per species. These structural changes translate into functional changes with impacted sites being less robust to simulated species loss. Temperate Atlantic seagrass webs are similar to a tropical seagrass web, yet differed from other aquatic webs, suggesting consistent food-web characteristics across seagrass ecosystems in different regions. Our study illustrates that food-web structure and functioning of seagrass habitats change with human impacts and that the spatial scale of food-web analysis

  15. Food-web structure of seagrass communities across different spatial scales and human impacts.

    Directory of Open Access Journals (Sweden)

    Marta Coll

    Full Text Available Seagrass beds provide important habitat for a wide range of marine species but are threatened by multiple human impacts in coastal waters. Although seagrass communities have been well-studied in the field, a quantification of their food-web structure and functioning, and how these change across space and human impacts has been lacking. Motivated by extensive field surveys and literature information, we analyzed the structural features of food webs associated with Zostera marina across 16 study sites in 3 provinces in Atlantic Canada. Our goals were to (i quantify differences in food-web structure across local and regional scales and human impacts, (ii assess the robustness of seagrass webs to simulated species loss, and (iii compare food-web structure in temperate Atlantic seagrass beds with those of other aquatic ecosystems. We constructed individual food webs for each study site and cumulative webs for each province and the entire region based on presence/absence of species, and calculated 16 structural properties for each web. Our results indicate that food-web structure was similar among low impact sites across regions. With increasing human impacts associated with eutrophication, however, food-web structure show evidence of degradation as indicated by fewer trophic groups, lower maximum trophic level of the highest top predator, fewer trophic links connecting top to basal species, higher fractions of herbivores and intermediate consumers, and higher number of prey per species. These structural changes translate into functional changes with impacted sites being less robust to simulated species loss. Temperate Atlantic seagrass webs are similar to a tropical seagrass web, yet differed from other aquatic webs, suggesting consistent food-web characteristics across seagrass ecosystems in different regions. Our study illustrates that food-web structure and functioning of seagrass habitats change with human impacts and that the spatial scale of

  16. Spatial and functional city structure with examples of Valjevo, Bor and Knjaževac

    Directory of Open Access Journals (Sweden)

    Spasić Nenad

    2005-01-01

    Full Text Available Cities represent such social environments which develop under the influence of their resource hinterland, yet at the same time they vigorously affect changes in their immediate or broader surroundings, depending on dynamics of city limits change. From city origins to the present day, interdependences between its spatial and functional structures can be noticed. Historical context plays a significant role in city development, both in terms of its spatial structure formation as well as in terms of development of city functions and territorial distribution of urban services. Spatial structure of a city is also defined by a set of geographical, economic, social functional and other features in their interdependency. Functional structure of a city depends on its size and position it takes in the functional distribution on a regional level as well as it is related to the functional capacity of a city. This paper analyses concrete examples of spatial and functional structures featuring three Serbian towns: Valjevo, Bor and Knjaževac. From the analysis of their common attributes in this respect, the following can be noticed: formation of the case study towns happened around inherited historical city cores, which even now perform a number of public functions; basic road networks significantly influenced formation of spatial patterns of these towns; spatial development of the towns in the last decade or so was slowed down because of economic and social stagnation, which didn't show major influence on change of spatial and functional structures of the towns involved.

  17. Defining an essence of structure determining residue contacts in proteins.

    Science.gov (United States)

    Sathyapriya, R; Duarte, Jose M; Stehr, Henning; Filippis, Ioannis; Lappe, Michael

    2009-12-01

    The network of native non-covalent residue contacts determines the three-dimensional structure of a protein. However, not all contacts are of equal structural significance, and little knowledge exists about a minimal, yet sufficient, subset required to define the global features of a protein. Characterisation of this "structural essence" has remained elusive so far: no algorithmic strategy has been devised to-date that could outperform a random selection in terms of 3D reconstruction accuracy (measured as the Ca RMSD). It is not only of theoretical interest (i.e., for design of advanced statistical potentials) to identify the number and nature of essential native contacts-such a subset of spatial constraints is very useful in a number of novel experimental methods (like EPR) which rely heavily on constraint-based protein modelling. To derive accurate three-dimensional models from distance constraints, we implemented a reconstruction pipeline using distance geometry. We selected a test-set of 12 protein structures from the four major SCOP fold classes and performed our reconstruction analysis. As a reference set, series of random subsets (ranging from 10% to 90% of native contacts) are generated for each protein, and the reconstruction accuracy is computed for each subset. We have developed a rational strategy, termed "cone-peeling" that combines sequence features and network descriptors to select minimal subsets that outperform the reference sets. We present, for the first time, a rational strategy to derive a structural essence of residue contacts and provide an estimate of the size of this minimal subset. Our algorithm computes sparse subsets capable of determining the tertiary structure at approximately 4.8 A Ca RMSD with as little as 8% of the native contacts (Ca-Ca and Cb-Cb). At the same time, a randomly chosen subset of native contacts needs about twice as many contacts to reach the same level of accuracy. This "structural essence" opens new avenues in the

  18. Between structures and norms : Assessing tax increment financing for the Dutch spatial planning toolkit

    NARCIS (Netherlands)

    Root, Liz; Van Der Krabben, Erwin; Spit, Tejo

    2015-01-01

    The aim of the paper is to assess the institutional (mis)fit of tax increment financing for the Dutch spatial planning financial toolkit. By applying an institutionally oriented assessment framework, we analyse the interconnectivity of Dutch municipal finance and spatial planning structures and

  19. Spatial Analysis of Linear Structures in the Exploration of Groundwater

    Directory of Open Access Journals (Sweden)

    Abdramane Dembele

    2017-11-01

    Full Text Available The analysis of linear structures on major geological formations plays a crucial role in resource exploration in the Inner Niger Delta. Highlighting and mapping of the large lithological units were carried out using image fusion, spectral bands (RGB coding, Principal Component Analysis (PCA, and band ratio methods. The automatic extraction method of linear structures has permitted the obtaining of a structural map with 82,659 linear structures, distributed on different stratigraphic stages. The intensity study shows an accentuation in density over 12.52% of the total area, containing 22.02% of the linear structures. The density and nodes (intersections of fractures formed by the linear structures on the different lithologies allowed to observe the behavior of the region’s aquifers in the exploration of subsoil resources. The central density, in relation to the hydrographic network of the lowlands, shows the conditioning of the flow and retention of groundwater in the region, and in-depth fluids. The node areas and high-density linear structures, have shown an ability to have rejections in deep (pores that favor the formation of structural traps for oil resources.

  20. The Urban Heat Island Impact in Consideration of Spatial Pattern of Urban Landscape and Structure

    Science.gov (United States)

    Kim, J.; Lee, D. K.; Jeong, W.; Sung, S.; Park, J.

    2015-12-01

    Preceding study has established a clear relationship between land surface temperature and area of land covers. However, only few studies have specifically examined the effects of spatial patterns of land covers and urban structure. To examine how much the local climate is affected by the spatial pattern in highly urbanized city, we investigated the correlation between land surface temperature and spatial patterns of land covers. In the analysis of correlation, we categorized urban structure to four different land uses: Apartment residential area, low rise residential area, industrial area and central business district. Through this study, we aims to examine the types of residential structure and land cover pattern for reducing urban heat island and sustainable development. Based on land surface temperature, we investigated the phenomenon of urban heat island through using the data of remote sensing. This study focused on Daegu in Korea. This city, one of the hottest city in Korea has basin form. We used high-resolution land cover data and land surface temperature by using Landsat8 satellite image to examine 100 randomly selected sample sites of 884.15km2 (1)In each land use, we quantified several landscape-levels and class-level landscape metrics for the sample study sites. (2)In addition, we measured the land surface temperature in 3 year hot summer seasons (July to September). Then, we investigated the pattern of land surface temperature for each land use through Ecognition package. (3)We deducted the Pearson correlation coefficients between land surface temperature and each landscape metrics. (4)We analyzed the variance among the four land uses. (5)Using linear regression, we determined land surface temperature model for each land use. (6)Through this analysis, we aims to examine the best pattern of land cover and artificial structure for reducing urban heat island effect in highly urbanized city. The results of linear regression showed that proportional land

  1. Spatial Diversity in Composition and Structure of Nekton in Ngenep Spring and its Channels, Karangploso - Malang

    Directory of Open Access Journals (Sweden)

    Lia Hapsari

    2014-04-01

    Full Text Available Water springs and its channel degradation due to anthropogenic pollution may alter the community structure of aquatic organisms. Water spring degradation tehrefore affect the quality of water as tourism resources. This study aims to investigate the changes in community structure of nekton  and determine the relationships between water quality characteristics to the diversity of nekton.  The field survey was set up in Ngenep spring and its channels. Results showed that nekton species found in Ngenep spring and its channels consists of 4 classes, 4 orders, 6 families, and 7 species with total 627 nekton samples. It is comprises of fishes, shrimp, frogs and waterstriders. Nekton diversity index (H’ in the spring and irrigation channel were in moderate level (1spatial variations of  physico-chemical water qualitiy parameters in Ngenep springs and its channels (temperature, stream velocity, turbidity, conductivity, pH, DO, BOD and TOM which affected to nekton diversity and community structure. Clustering analyses and PCA result shows correlation pattern between nekton distribution with physico-chemical water quality parameters. However, physico-chemical water quality parameters in Ngenep springs and its channel were still optimum as nekton habitat (PP No. 82/ 2001. Keywords: Community structure, Nekton, Spatial diversity, Spring, Water channel

  2. Spatial and kinematic structure of Monoceros star-forming region

    Science.gov (United States)

    Costado, M. T.; Alfaro, E. J.

    2018-05-01

    The principal aim of this work is to study the velocity field in the Monoceros star-forming region using the radial velocity data available in the literature, as well as astrometric data from the Gaia first release. This region is a large star-forming complex formed by two associations named Monoceros OB1 and OB2. We have collected radial velocity data for more than 400 stars in the area of 8 × 12 deg2 and distance for more than 200 objects. We apply a clustering analysis in the subspace of the phase space formed by angular coordinates and radial velocity or distance data using the Spectrum of Kinematic Grouping methodology. We found four and three spatial groupings in radial velocity and distance variables, respectively, corresponding to the Local arm, the central clusters forming the associations and the Perseus arm, respectively.

  3. Migration of northern yellowstone elk: Implications of spatial structuring

    Science.gov (United States)

    White, P.J.; Proffitt, K.M.; Mech, L.D.; Evans, S.B.; Cunningham, J.A.; Hamlin, K.L.

    2010-01-01

    Migration can enhance survival and recruitment of mammals by increasing access to higher-quality forage or reducing predation risk, or both. We used telemetry locations collected from 140 adult female elk during 20002003 and 20072008 to identify factors influencing the migration of northern Yellowstone elk. Elk wintered in 2 semidistinct herd segments and migrated 10140 km to at least 12 summer areas in Yellowstone National Park (YNP) and nearby areas of Montana. Spring migrations were delayed after winters with increased snow pack, with earlier migration in years with earlier vegetation green-up. Elk wintering at lower elevations outside YNP migrated an average of 13 days earlier than elk at higher elevations. The timing of autumn migrations varied annually, but elk left their summer ranges at about the same time regardless of elevation, wolf numbers, or distance to their wintering areas. Elk monitored for multiple years typically returned to the same summer (96 fidelity, n 52) and winter (61 fidelity, n 41) ranges. Elk that wintered at lower elevations in or near the northwestern portion of the park tended to summer in the western part of YNP (56), and elk that wintered at higher elevations spent summer primarily in the eastern and northern parts of the park (82). Elk did not grossly modify their migration timing, routes, or use areas after wolf restoration. Elk mortality was low during summer and migration (8 of 225 elk-summers). However, spatial segregation and differential mortality and recruitment between herd segments on the northern winter range apparently contributed to a higher proportion of the elk population wintering outside the northwestern portion of YNP and summering in the western portion of the park. This change could shift wolf spatial dynamics more outside YNP and increase the risk of transmission of brucellosis from elk to cattle north of the park. ?? 2010 American Society of Mammalogists.

  4. The role and origin of dilatant structural environments in the spatial control of geo-economic deposits

    International Nuclear Information System (INIS)

    Rosello, E.

    2010-01-01

    A major controlling the geometry, size and spatial location of the mineralization is the tectonic structure. This control is indeed essential in epigenetic deposits, where the structure is the main factor to determine the circulation, precipitation, and in many cases the generation of hydrothermal solutions associated with mineral deposits and / or alterations. Therefore, learning the type of structural control that a particular deposit is charged on a particular aspect and of fundamental importance not only in yacimientología to contribute to the genetic knowledge but also in economic terms to provide ideas and guidance in tasks prospecting, exploration and mineral exploitation

  5. Analyzing the simplicial decomposition of spatial protein structures

    Directory of Open Access Journals (Sweden)

    Szabadka Zoltán

    2008-02-01

    Full Text Available Abstract Background The fast growing Protein Data Bank contains the three-dimensional description of more than 45000 protein- and nucleic-acid structures today. The large majority of the data in the PDB are measured by X-ray crystallography by thousands of researchers in millions of work-hours. Unfortunately, lots of structural errors, bad labels, missing atoms, falsely identified chains and groups make dificult the automated processing of this treasury of structural biological data. Results After we performed a rigorous re-structuring of the whole PDB on graph-theoretical basis, we created the RS-PDB (Rich-Structure PDB database. Using this cleaned and repaired database, we defined simplicial complexes on the heavy-atoms of the PDB, and analyzed the tetrahedra for geometric properties. Conclusion We have found surprisingly characteristic differences between simplices with atomic vertices of different types, and between the atomic neighborhoods – described also by simplices – of different ligand atoms in proteins.

  6. Overcoming barriers to membrane protein structure determination.

    Science.gov (United States)

    Bill, Roslyn M; Henderson, Peter J F; Iwata, So; Kunji, Edmund R S; Michel, Hartmut; Neutze, Richard; Newstead, Simon; Poolman, Bert; Tate, Christopher G; Vogel, Horst

    2011-04-01

    After decades of slow progress, the pace of research on membrane protein structures is beginning to quicken thanks to various improvements in technology, including protein engineering and microfocus X-ray diffraction. Here we review these developments and, where possible, highlight generic new approaches to solving membrane protein structures based on recent technological advances. Rational approaches to overcoming the bottlenecks in the field are urgently required as membrane proteins, which typically comprise ~30% of the proteomes of organisms, are dramatically under-represented in the structural database of the Protein Data Bank.

  7. Methods for Enhancing Geological Structures in Spectral Spatial Difference-Based on Remote-Sensing Image

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    @@In this paper, some image processing methods such as directional template (mask) matching enhancement, pseudocolor or false color enhancement, K-L transform enhancement are used to enhance a geological structure, one of important ore-controlling factors, shown in the remote-sensing images.This geological structure is regarded as image anomaly in the remote-sensing image, since considerable differences, based on the spatial spectral distribution pattern, in gray values (spectral), color tones and texture, are always present between the geological structure and background. Therefore,the enhancement of the geological structure in the remotesensing image is that of the spectral spatial difference.

  8. determination of verticality of reservoir engineering structure

    African Journals Online (AJOL)

    user

    applications is 3D survey and management of oil and gas facilities and other engineering structures. This recent .... also affect ground water contamination. 2. VERTICALITY ...... The soil, water and concrete in a Reservoir at the foundation bed ...

  9. DETERMINANTS OF FINANCIAL STRUCTURE OF GREEK COMPANIES

    Directory of Open Access Journals (Sweden)

    Gargalis PANAGIOTIS

    2016-06-01

    Full Text Available Capital structure is essential for the survival, growth and performance of a firm. There has been a growing interest worldwide in identifying the factors associated with debt leverage. This article aims to investigate the factors affecting the capital structure of companies listed on the Athens Stock Exchange (ASE. The data set used is composed of indicators reflecting the financial position and performance of 40 firms listed on the ASE in 2014. Using a regression model we estimate in what extent the financial structure of companies is affected by performance indicators and other specific factors like the field of activity or the size of the firms. The results obtained show an important influence of share of tangible assets in total assets of the company on the financial leverage, as main variable selected in order to reflect the capital structure of Greek companies.

  10. Capturing the age and spatial structures of migration

    NARCIS (Netherlands)

    Rogers, A; Raymer, J; Willekens, F

    In this paper we model the structures found in the level (generation) and allocation (distribution) components of age-specific and origin-destination-specific migration flows. For the examples, we examine the regional migration patterns in the USA for four periods: 1955-60, 1965-70, 1975-80, and

  11. FRAGSTATS: spatial pattern analysis program for quantifying landscape structure.

    Science.gov (United States)

    Kevin McGarigal; Barbara J. Marks

    1995-01-01

    This report describes a program, FRAGSTATS, developed to quantify landscape structure. FRAGSTATS offers a comprehensive choice of landscape metrics and was designed to be as versatile as possible. The program is almost completely automated and thus requires little technical training. Two separate versions of FRAGSTATS exist: one for vector images and one for raster...

  12. Non-Stationary Dependence Structures for Spatial Extremes

    KAUST Repository

    Huser, Raphaë l; Genton, Marc G.

    2016-01-01

    been developed, and fitted to various types of data. However, a recurrent problem is the modeling of non-stationarity. In this paper, we develop non-stationary max-stable dependence structures in which covariates can be easily incorporated. Inference

  13. Spatial and population genetic structure of microsatellites in white pine

    Science.gov (United States)

    Paula E. Marquardt; Bryan K. Epperson

    2004-01-01

    We evaluated the population genetic structure of seven microsatellite loci for old growth and second growth populations of eastern white pine (Pinus strobus). From each population, located within Hartwick Pines State Park, Grayling, Michigan, USA, 120-122 contiguous trees were sampled for genetic analysis. Within each population, genetic diversity...

  14. Spatial variability in the icthyoplankton structure of a subtropicalhypersaline lagoon

    Directory of Open Access Journals (Sweden)

    Judson da Cruz Lopes da Rosa

    Full Text Available Abstract The Lagoa de Araruama is a hypersaline ecosystem inhabited by distinct fish species, either permanently or during their reproductive season. Over recent years, some significant environmental changes have been observed in this ecosystem related to the sewage runoff, as salinity decrease (from 64 to 41 psu during the last 40 years and nutrients increase. As both changes are thought to affect the ichthyoplankton assemblage, the present study aimed to evaluate all the potential relationships between salinity disruption and fish larvae distribution. Ichtyoplankton samples were collected monthly from January 2010 to March 2011 at eight sites in Araruama Lagoon by means of a WP2 plankton net equipped with a flowmeter. During this period, low egg densities were coincident with high salinity regions, suggesting that adults are avoiding to release their eggs under less favorable environmental conditions to the larvae. The uneven distribution of eggs and larvae inside the lagoon, as revealed by both spatial and temporal analyses lead us to suggest that changes in salinity have influenced the reproductive rhythms of those fish species that depend upon the Lagoa de Araruama.

  15. An experimental magnetic moment determination method based on spatial harmonic analysis of magnetic flux density signatures

    Directory of Open Access Journals (Sweden)

    A.V. Getman

    2013-12-01

    Full Text Available Theoretical aspects of an experimental determination method for residual and inductive magnetic moments of a technical object are considered. As input data, the technical object magnetic induction signatures obtained under its linear movement near a pair of three-component sensors are used. A magnetic signature integration technique based on spatial harmonic analysis of the magnetic field represented by twenty-four multipole coefficients is introduced.

  16. Multiscale Spatial Assessment of Determinant Factors of Land Use Change: Study at Urban Area of Yogyakarta

    Science.gov (United States)

    Susilo, Bowo

    2017-12-01

    Studies of land use change have been undertaken by different researchers using various methods. Among those methods, modelling is widely utilized. Modelling land use change required several components remarked as model variables. Those represent any conditions or factors which considered relevant or have some degree of correlation to the changes of land use. Variables which have significant correlation to land use change are referred as determinant factors or driving forces. Those factors as well as changes of land use are distributed across space and therefore referred as spatial determinant factors. The main objective of the research was to examine land use change and its determinant factors. Area and location of land use change were analysed based on three different years of land use maps, which are 1993, 2000 and 2007. Spatial and temporal analysis were performed which emphasize to the influence of scale to both of analysis’s. Urban area of Yogyakarta was selected as study area. Study area covered three different districts (kabupaten), involving 20 sub districts and totally consists of 74 villages. Result of this study shows that during 14 years periods (1993 to 2007), there were about 1,460 hectares of land use change had been taken place. Dominant type of land use change is agricultural to residential. The uses of different spatial and temporal scale in analysis were able to reveal different factors related to land use change. In general, factors influencing the quantities of land use change in the study area were population growth and the availability of land. The use of data with different spatial resolution can reveal the presence of various factors associated with the location of the change. Locations of land use change were influenced or determined by accessibility factors.

  17. MODELING OF HARDWARE AND ALGORITHMIC STRUCTURE OF MOBILE MULTIPOSITIONING RADIO RANGEFINDING NAVIGATION AND LANDING AEROSYSTEM IN ITS SPATIAL CONFIGURATION

    Directory of Open Access Journals (Sweden)

    Ya. V. Kondrashov

    2014-01-01

    Full Text Available The concept of structuring of radio equipment, mathematical and algorithmic tools to provide computing operations for determining the location of aircraft in spatial configuration of mobile (portable multipositioning radio rangefinding interrogation-reply navigation and landing system is considered in this article. The mathematical modeling of algorithms of aircraft traffic terminal control is carried out. The results of calculations of potential system performance and its analysis for compliance with international safety requirements are represented.

  18. Geostatistical mapping of Cs-137 contamination depth in building structures by integrating ISOCS measurements of different spatial supports

    Energy Technology Data Exchange (ETDEWEB)

    Boden, S.; Jacques, D. [Institute for Environment, Health and Safety, Belgian Nuclear Research Centre (SCK-CEN), Boeretang 200, BE-2400, Mol (Belgium); Rogiers, B. [Dept. of Earth and Environmental Sciences, KU Leuven - University of Leuven Celestijnenlaan 200e - bus 2410, BE-3001, Leuven (Belgium)

    2013-07-01

    Reliable methods to determine the contamination depth in nuclear building structures are very much needed for minimizing the radioactive waste volume and the decontamination workload. This paper investigates the geostatistical integration of in situ gamma-ray spectroscopy measurements of different spatial supports. A case study is presented from the BR3 decommissioning project, yielding an estimated reduction of waste volume of ∼35%, and recommendations are made for future application of the proposed methodology. (authors)

  19. Multi-level analyses of spatial and temporal determinants for dengue infection.

    Science.gov (United States)

    Vanwambeke, Sophie O; van Benthem, Birgit H B; Khantikul, Nardlada; Burghoorn-Maas, Chantal; Panart, Kamolwan; Oskam, Linda; Lambin, Eric F; Somboon, Pradya

    2006-01-18

    Dengue is a mosquito-borne viral infection that is now endemic in most tropical countries. In Thailand, dengue fever/dengue hemorrhagic fever is a leading cause of hospitalization and death among children. A longitudinal study among 1750 people in two rural and one urban sites in northern Thailand from 2001 to 2003 studied spatial and temporal determinants for recent dengue infection at three levels (time, individual and household). Determinants for dengue infection were measured by questionnaire, land-cover maps and GIS. IgM antibodies against dengue were detected by ELISA. Three-level multi-level analysis was used to study the risk determinants of recent dengue infection. Rates of recent dengue infection varied substantially in time from 4 to 30%, peaking in 2002. Determinants for recent dengue infection differed per site. Spatial clustering was observed, demonstrating variation in local infection patterns. Most of the variation in recent dengue infection was explained at the time-period level. Location of a person and the environment around the house (including irrigated fields and orchards) were important determinants for recent dengue infection. We showed the focal nature of asymptomatic dengue infections. The great variation of determinants for recent dengue infection in space and time should be taken into account when designing local dengue control programs.

  20. Multi-level analyses of spatial and temporal determinants for dengue infection

    Directory of Open Access Journals (Sweden)

    Oskam Linda

    2006-01-01

    Full Text Available Abstract Background Dengue is a mosquito-borne viral infection that is now endemic in most tropical countries. In Thailand, dengue fever/dengue hemorrhagic fever is a leading cause of hospitalization and death among children. A longitudinal study among 1750 people in two rural and one urban sites in northern Thailand from 2001 to 2003 studied spatial and temporal determinants for recent dengue infection at three levels (time, individual and household. Methods Determinants for dengue infection were measured by questionnaire, land-cover maps and GIS. IgM antibodies against dengue were detected by ELISA. Three-level multi-level analysis was used to study the risk determinants of recent dengue infection. Results Rates of recent dengue infection varied substantially in time from 4 to 30%, peaking in 2002. Determinants for recent dengue infection differed per site. Spatial clustering was observed, demonstrating variation in local infection patterns. Most of the variation in recent dengue infection was explained at the time-period level. Location of a person and the environment around the house (including irrigated fields and orchards were important determinants for recent dengue infection. Conclusion We showed the focal nature of asymptomatic dengue infections. The great variation of determinants for recent dengue infection in space and time should be taken into account when designing local dengue control programs.

  1. Science achievement determinants: factorial structure of family ...

    African Journals Online (AJOL)

    The family plays an important role in determining the academic achievement ... parents' assistance, expectation, and encouragement in their children's mathematics ... suggested that cultural upbringing is a strong factor contributing to the.

  2. Toolbox for super-structured and super-structure free multi-disciplinary building spatial design optimisation

    NARCIS (Netherlands)

    Boonstra, S.; van der Blom, K.; Hofmeyer, H.; Emmerich, M.T.M.; van Schijndel, A.W.M.; de Wilde, P.

    2018-01-01

    Multi-disciplinary optimisation of building spatial designs is characterised by large solution spaces. Here two approaches are introduced, one being super-structured and the other super-structure free. Both are different in nature and perform differently for large solution spaces and each requires

  3. Structure determination by X-ray crystallography

    CERN Document Server

    Ladd, M F C

    1995-01-01

    X-ray crystallography provides us with the most accurate picture we can get of atomic and molecular structures in crystals. It provides a hard bedrock of structural results in chemistry and in mineralogy. In biology, where the structures are not fully crystalline, it can still provide valuable results and, indeed, the impact here has been revolutionary. It is still an immense field for young workers, and no doubt will provide yet more striking develop­ ments of a major character. It does, however, require a wide range of intellectual application, and a considerable ability in many fields. This book will provide much help. It is a very straightforward and thorough guide to every aspect of the subject. The authors are experienced both as research workers themselves and as teachers of standing, and this is shown in their clarity of exposition. There are plenty of iliustrations and worked examples to aid the student to obtain a real grasp of the subject.

  4. Structural determinants in the bulk heterojunction.

    Science.gov (United States)

    Acocella, Angela; Höfinger, Siegfried; Haunschmid, Ernst; Pop, Sergiu C; Narumi, Tetsu; Yasuoka, Kenji; Yasui, Masato; Zerbetto, Francesco

    2018-02-21

    Photovoltaics is one of the key areas in renewable energy research with remarkable progress made every year. Here we consider the case of a photoactive material and study its structural composition and the resulting consequences for the fundamental processes driving solar energy conversion. A multiscale approach is used to characterize essential molecular properties of the light-absorbing layer. A selection of bulk-representative pairs of donor/acceptor molecules is extracted from the molecular dynamics simulation of the bulk heterojunction and analyzed at increasing levels of detail. Significantly increased ground state energies together with an array of additional structural characteristics are identified that all point towards an auxiliary role of the material's structural organization in mediating charge-transfer and -separation. Mechanistic studies of the type presented here can provide important insights into fundamental principles governing solar energy conversion in next-generation photovoltaic devices.

  5. Spatial Dynamics of Coherent Structures in a Thermal Plasma Jet

    Czech Academy of Sciences Publication Activity Database

    Hlína, Jan; Sekerešová, Zuzana; Šonský, Jiří

    2008-01-01

    Roč. 36, č. 4 (2008), s. 1066-1067 ISSN 0093-3813 R&D Projects: GA ČR GA202/05/0728 Institutional research plan: CEZ:AV0Z20570509 Keywords : charge-coupled-device (CCD) camera * coherent structure * thermal plasma jet * turbulence Subject RIV: BL - Plasma and Gas Discharge Physics Impact factor: 1.447, year: 2008

  6. Automation method to identify the geological structure of seabed using spatial statistic analysis of echo sounding data

    Science.gov (United States)

    Kwon, O.; Kim, W.; Kim, J.

    2017-12-01

    Recently construction of subsea tunnel has been increased globally. For safe construction of subsea tunnel, identifying the geological structure including fault at design and construction stage is more than important. Then unlike the tunnel in land, it's very difficult to obtain the data on geological structure because of the limit in geological survey. This study is intended to challenge such difficulties in a way of developing the technology to identify the geological structure of seabed automatically by using echo sounding data. When investigation a potential site for a deep subsea tunnel, there is the technical and economical limit with borehole of geophysical investigation. On the contrary, echo sounding data is easily obtainable while information reliability is higher comparing to above approaches. This study is aimed at developing the algorithm that identifies the large scale of geological structure of seabed using geostatic approach. This study is based on theory of structural geology that topographic features indicate geological structure. Basic concept of algorithm is outlined as follows; (1) convert the seabed topography to the grid data using echo sounding data, (2) apply the moving window in optimal size to the grid data, (3) estimate the spatial statistics of the grid data in the window area, (4) set the percentile standard of spatial statistics, (5) display the values satisfying the standard on the map, (6) visualize the geological structure on the map. The important elements in this study include optimal size of moving window, kinds of optimal spatial statistics and determination of optimal percentile standard. To determine such optimal elements, a numerous simulations were implemented. Eventually, user program based on R was developed using optimal analysis algorithm. The user program was designed to identify the variations of various spatial statistics. It leads to easy analysis of geological structure depending on variation of spatial statistics

  7. Some structural determinants of melody recall.

    Science.gov (United States)

    Boltz, M

    1991-05-01

    Sophisticated musicians were asked to recall, using musical notation, a set of unfamiliar folk tunes that varied in rhythmic structure and referents of tonality. The results showed that memory was facilitated by tonic triad members marking phrase endings, but only when their presence was highlighted by a corresponding pattern of temporal accents. Conversely, recall significantly declined when tonal information was either absent or obscured by rhythmic structure. Error analyses further revealed that the retention of overall pitch contour and information at phrase ending points varied as a function of these manipulations. The results are discussed in terms of a framework that links the acts of perceiving and remembering to a common attentional scheme.

  8. Lionfish abundance, size structure and spatial distribution along the Venezuelan coast (Pterois volitans, Pteroinae: Scorpaenidae

    Directory of Open Access Journals (Sweden)

    Esteban A. Agudo

    2014-09-01

    Full Text Available The recent invasion of lionfish (Pterois volitans in the Atlantic is considered a new threat to benthic and fish communities in the Caribbean region. This species was first reported in Venezuela in 2009 at various sites. Increasing reports in the past five years suggest lionfish has expanded its range of distribution and habitats. Nevertheless, this information is mostly anecdotal and extensive surveys aimed to determine its abundance, size structure and other ecological aspects encompassing wider spatial scales are necessary to understand the actual role of this species on sub-tidal marine communities in Venezuela. We determined its density and population size structure through visual census along the Venezuelan coast. Visual censuses were made following strip transects at a depth between 5 and 20m and in daylight time, at 19 sites in five localities. Average density ranged between 7 to 55 individuals per hectare among sites. Most individuals were adults and most were found in caves, coexisting with other lionfish or with different species, while others were actively preying. The fish Pterois volitans seems to be well-established along the Venezuelan coast in densities that in some sites appear to be higher than in their Pacific native range but lower than in some invaded localities of the Atlantic.

  9. Spatiotemporal Dynamics and Spatial Determinants of Urban Growth in Suzhou, China

    Directory of Open Access Journals (Sweden)

    Ling Zhang

    2017-03-01

    Full Text Available This paper analyzes the spatiotemporal dynamics of urban growth and models its spatial determinants in China through a case study of Suzhou, a rapidly industrializing and globalizing city. We conducted spatial analysis on land use data derived from multi-temporal remote sensing images of Suzhou from 1986 to 2008. Three urban growth types, namely infilling, edge-expansion, and leapfrog, were identified. We used landscape metrics to quantify the temporal trend of urban growth in Suzhou. During these 22 years, Suzhou’s urbanization changed from bottom-up rural urbanization to city-based top-down urban expansion. The underlying mechanism changed from TVE (town village enterprise driven rural industrialization to FDI (foreign direct investment driven development zone fever. Furthermore, we employed both global and local logistic regressions to model the probability of urban land conversion against a set of spatial variables. The global logistic regression model found the significance of proximity, neighborhood conditions, and socioeconomic factors. The logistic geographically weighted regression (GWR model improved the global regression model with better model goodness-of-fit and higher prediction accuracy. More importantly, the local parameter estimates of variables enabled us to exam spatial variations of the influences of variables on urban growth in Suzhou.

  10. Overcoming barriers to membrane protein structure determination

    NARCIS (Netherlands)

    Bill, Roslyn M.; Henderson, Peter J. F.; Iwata, So; Kunji, Edmund R. S.; Michel, Hartmut; Neutze, Richard; Newstead, Simon; Poolman, Bert; Tate, Christopher G.; Vogel, Horst

    After decades of slow progress, the pace of research on membrane protein structures is beginning to quicken thanks to various improvements in technology, including protein engineering and microfocus X-ray diffraction. Here we review these developments and, where possible, highlight generic new

  11. Structural determination and gynecological tumor diagnosis using ...

    African Journals Online (AJOL)

    covalent bonding patterns and branched structures. Studies have shown that changes in protein glycosylation at the cell surface during tumorigenesis are closely related to the occurrence and development of some cancers, including pancreatic cancer, mammary cancer, prostatic cancer, colon cancer, and gastric cancer [1].

  12. Determining the structure of Carbon-60

    International Nuclear Information System (INIS)

    Wif, D.

    1994-01-01

    Carbon-60 is the most stable and best known of the carbon cage structures known collectively as the fullerenes. It is a remarkable molecule that forms a fascinating solid. Although the molecular shape of C sub 6 sub 0 is familiar - it is simply the shape of a soccer ball with 12 pentagons and 20 hexagons - the manner in which it forms a crystal structure is by no means obvious. This talk will focus on the insights which neutron scattering at ISIS has brought to our understanding of solid C sub6 sub 0. At room temperature, the structure may be regarded as forming as essentially ideal cubic-close packed molecular b ubble-raft : each molecule is reorienting so rapidly that a time-averaged picture, over as little as a nanosecond, reveals a closely spherical shell of atomic density. At 260 K, a rather unusual structural transition occurs. The molecules order but still retain cubic symmetry. Although this may not appear to be a rather dramatic change, detailed considerations show that a profound transition has occurred that bears close similarities to a solid-liquid phase transition but in two dimensions. Below 260 K, reorientation still occurs but at a dramatically reduced rate as the temperature is lowered. Indeed at around 90 K, The reorientation is so slow that thermodynamic equilibrium cannot be achieved in a reasonable timescale an orientational glass transition occurs. Although the behaviour of solid C sub 6 sub 0 undergoes dramatic changes as a function of temperature, a coherent description has evolved in which neutron scattering plays a central role. Close analogies are to be found in the study of systems as diverse as solid H sub 2 and human-rhinovirus structures. These analogies and the central role played by neutron scattering at ISIS will be emphasised in this paper. 5 figs., 10 refs. (author)

  13. Recognition of management structure and spatial planning in Tehran metropolitan area

    Directory of Open Access Journals (Sweden)

    Manijeh Lalehpour

    2016-06-01

    Full Text Available Metropolitan areas are concentrated and dense areas filled settlements and include a central urban region with its surrounding residences. Severity and complexity of issues in metropolitan areas along with intricacy and quantity of influential factors in these areas necessitate novel approaches and innovative solutions for comprehensive strategies and management coordination of land use in these regions. The present study has taken this approach to investigate management structure and spatial planning in Tehran metropolitan area. The study takes parameters like political and management decentralization, elements affecting urban management based on the sources of power and province and finally spatial domain of urban management into account. Findings revealed that decentralization in national management and political structure has limited tasks and authority of urban management. In this regard, a closer look at management structure and spatial planning of Tehran metropolitan are demonstrates that the government and its element dominate policy making, planning and spatial management of the city and inherent position of municipality and city council suffer weaknesses in their role as urban management. Results from investigating official tasks in urban management elements and their spatial domain reveals lack of coordination and Fragmentation in management structure and spatial planning in the region. The paper attempts to discuss these Fragmentation in the fields of management, function, politics and domains.

  14. Energy spectrum, dissipation, and spatial structures in reduced Hall magnetohydrodynamic

    Energy Technology Data Exchange (ETDEWEB)

    Martin, L. N.; Dmitruk, P. [Departamento de Fisica, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires and IFIBA, CONICET, Ciudad Universitaria, 1428 Buenos Aires (Argentina); Gomez, D. O. [Departamento de Fisica, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires and IFIBA, CONICET, Ciudad Universitaria, 1428 Buenos Aires (Argentina); Instituto de Astronomia y Fisica del Espacio, CONICET, Buenos Aires (Argentina)

    2012-05-15

    We analyze the effect of the Hall term in the magnetohydrodynamic turbulence under a strong externally supported magnetic field, seeing how this changes the energy cascade, the characteristic scales of the flow, and the dynamics of global magnitudes, with particular interest in the dissipation. Numerical simulations of freely evolving three-dimensional reduced magnetohydrodynamics are performed, for different values of the Hall parameter (the ratio of the ion skin depth to the macroscopic scale of the turbulence) controlling the impact of the Hall term. The Hall effect modifies the transfer of energy across scales, slowing down the transfer of energy from the large scales up to the Hall scale (ion skin depth) and carrying faster the energy from the Hall scale to smaller scales. The final outcome is an effective shift of the dissipation scale to larger scales but also a development of smaller scales. Current sheets (fundamental structures for energy dissipation) are affected in two ways by increasing the Hall effect, with a widening but at the same time generating an internal structure within them. In the case where the Hall term is sufficiently intense, the current sheet is fully delocalized. The effect appears to reduce impulsive effects in the flow, making it less intermittent.

  15. Analysis of small scale turbulent structures and the effect of spatial scales on gas transfer

    Science.gov (United States)

    Schnieders, Jana; Garbe, Christoph

    2014-05-01

    The exchange of gases through the air-sea interface strongly depends on environmental conditions such as wind stress and waves which in turn generate near surface turbulence. Near surface turbulence is a main driver of surface divergence which has been shown to cause highly variable transfer rates on relatively small spatial scales. Due to the cool skin of the ocean, heat can be used as a tracer to detect areas of surface convergence and thus gather information about size and intensity of a turbulent process. We use infrared imagery to visualize near surface aqueous turbulence and determine the impact of turbulent scales on exchange rates. Through the high temporal and spatial resolution of these types of measurements spatial scales as well as surface dynamics can be captured. The surface heat pattern is formed by distinct structures on two scales - small-scale short lived structures termed fish scales and larger scale cold streaks that are consistent with the footprints of Langmuir Circulations. There are two key characteristics of the observed surface heat patterns: 1. The surface heat patterns show characteristic features of scales. 2. The structure of these patterns change with increasing wind stress and surface conditions. In [2] turbulent cell sizes have been shown to systematically decrease with increasing wind speed until a saturation at u* = 0.7 cm/s is reached. Results suggest a saturation in the tangential stress. Similar behaviour has been observed by [1] for gas transfer measurements at higher wind speeds. In this contribution a new model to estimate the heat flux is applied which is based on the measured turbulent cell size und surface velocities. This approach allows the direct comparison of the net effect on heat flux of eddies of different sizes and a comparison to gas transfer measurements. Linking transport models with thermographic measurements, transfer velocities can be computed. In this contribution, we will quantify the effect of small scale

  16. Structure Preserving Spatial Discretization of a 1-D Piezoelectric Timoshenko Beam

    NARCIS (Netherlands)

    Voss, T.; Scherpen, J. M. A.

    2011-01-01

    In this paper we show how to spatially discretize a distributed model of a piezoelectric beam representing the dynamics of an inflatable space reflector in port-Hamiltonian (pH) form. This model can then be used to design a controller for the shape of the inflatable structure. Inflatable structures

  17. Density perturbations due to the inhomogeneous discrete spatial structure of space-time

    International Nuclear Information System (INIS)

    Wolf, C.

    1998-01-01

    For the case that space-time permits an inhomogeneous discrete spatial structure due to varying gravitational fields or a foam-like structure of space-time, it is demonstrated that thermodynamic reasoning implies that matter-density perturbations will arise in the early universe

  18. Hydrologic linkages drive spatial structuring of bacterial assemblages and functioning in alpine floodplains

    OpenAIRE

    Freimann, Remo; Bürgmann, Helmut; Findlay, Stuart E.G.; Robinson, Christopher T.

    2015-01-01

    Microbial community assembly and microbial functions are affected by a number of different but coupled drivers such as local habitat characteristics, dispersal rates, and species interactions. In groundwater systems, hydrological flow can introduce spatial structure and directional dependencies among these drivers. We examined the importance of hydrology in structuring bacterial communities and their function within two alpine floodplains during different hydrological states. Piezometers were...

  19. A Correlational Study of Seven Projective Spatial Structures with Regard to the Phases of the MOON^

    Science.gov (United States)

    Wellner, Karen Linette

    1995-01-01

    This study investigated the relationship between projective spatial structures and the ability to construct a scientific model. In addition, gender-related performance and the influence of prior astronomy experience on task success were evaluated. Sixty-one college science undergraduates were individually administered Piagetian tasks to assess for projective spatial structures and the ability to set up a phases of the moon model. The spatial tasks included: (a) Mountains task (coordination of perspectives); (b) Railroad task (size and intervals of objects with increasing distance); (c) Telephone Poles task (masking and ordering objects); and (d) Shadows task (spatial relationships between an object and its shadow, dependent upon the object's orientation). Cramer coefficient analyses indicated that significant relationships existed between Moon task and spatial task success. In particular, the Shadows task, requiring subjects to draw shadows of objects in different orientations, proved most difficult and was most strongly associated with with a subject's understanding of lunar phases. Chi-square tests for two independent samples were used to analyze gender performance differences on each of the Ave tasks. Males performed significantly better at a.05 significance level in regard to the Shadows task and the Moon task. Chi-square tests for two independent samples showed no significant difference in Moon task performance between subjects with astronomy or Earth science coursework, and those without such science classroom experience. Overall, only six subjects passed all seven projective spatial structure tasks. Piaget (1967) contends that concrete -operational spatial structures must be established before an individual is able to develop formal-operational patterns of thinking. The results of this study indicate that 90% of the interviewed science majors are still operating at the concrete-operational level. Several educational implications were drawn from this study

  20. Regional distribution of photovoltaic deployment in the UK and its determinants: A spatial econometric approach

    International Nuclear Information System (INIS)

    Balta-Ozkan, Nazmiye; Yildirim, Julide; Connor, Peter M.

    2015-01-01

    Photovoltaic (PV) panels offer significant potential for contributing to the UK's energy policy goals relating to decarbonisation of the energy system, security of supply and affordability. The substantive drop in the cost of panels since 2007, coupled with the introduction of the Feed-in Tariff (FiT) Scheme in 2010, has resulted in a rapid increase in installation of PV panels in the UK, from 26.5MWp in 2009 to over 5GW by the end of 2014. Yet there has been no comprehensive analysis of the determinants of PV deployment in the UK. This paper addresses this gap by employing spatial econometrics methods to a recently available data set at a fine geographical detail. Following a traditional regression analysis, a general to specific approach has been adopted where spatial variations in the relationships have been examined utilising the spatial Durbin model using the cross-sectional data relating to the UK NUTS level 3 data. Empirical results indicate that demand for electricity, population density, pollution levels, education level of households and housing types are among the factors that affect PV uptake in a region. Moreover Lagrange Multiplier test results indicate that the spatial Durbin model may be properly applied to describe the PV uptake relationship in the UK as there are significant regional spillover effects. - Highlights: • Spatial econometrics models applied to UK PV installation for the first time • Significant regional spillover effects are apparent. • Smaller households in highly polluted, less dense areas are the early adopters. • Strong substitution effect as high electricity spending induces PV installations. • Solar irradiation data are found to be significant.

  1. Underlying drivers and spatial determinants of post-Soviet agricultural land abandonment in temperate Eastern Europe

    DEFF Research Database (Denmark)

    Prishchepov, Alexander; Müller, Daniel; Baumann, Matthias

    2016-01-01

    Our goal was to understand the underlying drivers and spatial determinants of agricultural land abandonment following the collapse of the Soviet Union and the subsequent transition from state-command to market-driven economies from 1990 to 2000. We brought an example of agricultural land-use change...... in one agro-climatic zone stretching across Lithuania, Belarus, and Russia. Here, we provide an overview of the agricultural changes for the studied countries. We estimated the rates and patterns of agricultural land abandonment based on Landsat TM/ETM+ satellite images and linked these data...... %), and the differences in land abandonment rates reflected the contrasting strategies for transitioning toward a market economy. The spatial patterns of agricultural land abandonment across Lithuania and Russia corresponded to the land rent theory of von Thünen, as sites with low crop yields that were distant from...

  2. Spatio-temporal structure, path characteristics and perceptual grouping in immediate serial spatial recall

    Directory of Open Access Journals (Sweden)

    Carlo De Lillo

    2016-11-01

    Full Text Available Immediate serial spatial recall measures the ability to retain sequences of locations in short-term memory and is considered the spatial equivalent of digit span. It is tested by requiring participants to reproduce sequences of movements performed by an experimenter or displayed on a monitor. Different organizational factors dramatically affect serial spatial recall but they are often confounded or underspecified. Untangling them is crucial for the characterization of working-memory models and for establishing the contribution of structure and memory capacity to spatial span. We report five experiments assessing the relative role and independence of factors that have been reported in the literature. Experiment 1 disentangled the effects of spatial clustering and path-length by manipulating the distance of items displayed on a touchscreen monitor. Long-path sequences segregated by spatial clusters were compared with short-path sequences not segregated by clusters. Recall was more accurate for sequences segregated by clusters independently from path-length. Experiment 2 featured conditions where temporal pauses were introduced between or within cluster boundaries during the presentation of sequences with the same paths. Thus, the temporal structure of the sequences was either consistent or inconsistent with a hierarchical representation based on segmentation by spatial clusters but the effect of structure could not be confounded with effects of path-characteristics. Pauses at cluster boundaries yielded more accurate recall, as predicted by a hierarchical model. In Experiment 3, the systematic manipulation of sequence structure, path-length and presence of path-crossings of sequences showed that structure explained most of the variance, followed by the presence/absence of path-crossings, and path-length. Experiments 4 and 5 replicated the results of the previous experiments in immersive virtual reality navigation tasks where the viewpoint of the

  3. Structural properties and spatial ordering in multilayered ZnMgTe/ZnSe type-II quantum dot structures

    International Nuclear Information System (INIS)

    Manna, U.; Noyan, I. C.; Neumark, G. F.; Zhang, Q.; Moug, R.; Salakhutdinov, I. F.; Dunn, K. A.; Novak, S. W.; Tamargo, M. C.; Kuskovsky, I. L.

    2012-01-01

    We report the structural properties and spatial ordering of multilayer ZnMgTe quantum dots (QDs) embedded in ZnSe, where sub-monolayer quantities of Mg were introduced periodically during growth in order to reduce the valence band offset of ZnTe QDs. The periodicity, period dispersion, individual layer thickness, and the composition of the multilayer structures were determined by comparing the experimental high resolution x-ray diffraction (HRXRD) spectra to simulated ones for the allowed (004) and quasi-forbidden (002) reflections in combination with transmission electron microscopy (TEM) results. Secondary ion mass spectroscopy (SIMS) profiles confirmed the incorporation of Mg inside the QD layers, and the HRXRD analysis revealed that there is approximately 32% Mg in the ZnMgTe QDs. The presence of Mg contributes to higher scattering intensity of the HRXRD, leading to the observation of higher order superlattice peaks in both the (004) and (002) reflections. The distribution of scattered intensity in the reciprocal space map (RSM) shows that the diffuse scattered intensity is elongated along the q x axis, indicating a vertical correlation of the dots, which is found to be less defined for the sample with larger periodicity. The diffuse scattered intensity is also found to be weakly correlated along the q z direction indicating a weak lateral correlation of the dots.

  4. Reduced fine-scale spatial genetic structure in grazed populations of Dianthus carthusianorum.

    Science.gov (United States)

    Rico, Y; Wagner, H H

    2016-11-01

    Strong spatial genetic structure in plant populations can increase homozygosity, reducing genetic diversity and adaptive potential. The strength of spatial genetic structure largely depends on rates of seed dispersal and pollen flow. Seeds without dispersal adaptations are likely to be dispersed over short distances within the vicinity of the mother plant, resulting in spatial clustering of related genotypes (fine-scale spatial genetic structure, hereafter spatial genetic structure (SGS)). However, primary seed dispersal by zoochory can promote effective dispersal, increasing the mixing of seeds and influencing SGS within plant populations. In this study, we investigated the effects of seed dispersal by rotational sheep grazing on the strength of SGS and genetic diversity using 11 nuclear microsatellites for 49 populations of the calcareous grassland forb Dianthus carthusianorum. Populations connected by rotational sheep grazing showed significantly weaker SGS and higher genetic diversity than populations in ungrazed grasslands. Independent of grazing treatment, small populations showed significantly stronger SGS and lower genetic diversity than larger populations, likely due to genetic drift. A lack of significant differences in the strength of SGS and genetic diversity between populations that were recently colonized and pre-existing populations suggested that populations colonized after the reintroduction of rotational sheep grazing were likely founded by colonists from diverse source populations. We conclude that dispersal by rotational sheep grazing has the potential to considerably reduce SGS within D. carthusianorum populations. Our study highlights the effectiveness of landscape management by rotational sheep grazing to importantly reduce genetic structure at local scales within restored plant populations.

  5. A Spatial Framework for Understanding Population Structure and Admixture.

    Science.gov (United States)

    Bradburd, Gideon S; Ralph, Peter L; Coop, Graham M

    2016-01-01

    Geographic patterns of genetic variation within modern populations, produced by complex histories of migration, can be difficult to infer and visually summarize. A general consequence of geographically limited dispersal is that samples from nearby locations tend to be more closely related than samples from distant locations, and so genetic covariance often recapitulates geographic proximity. We use genome-wide polymorphism data to build "geogenetic maps," which, when applied to stationary populations, produces a map of the geographic positions of the populations, but with distances distorted to reflect historical rates of gene flow. In the underlying model, allele frequency covariance is a decreasing function of geogenetic distance, and nonlocal gene flow such as admixture can be identified as anomalously strong covariance over long distances. This admixture is explicitly co-estimated and depicted as arrows, from the source of admixture to the recipient, on the geogenetic map. We demonstrate the utility of this method on a circum-Tibetan sampling of the greenish warbler (Phylloscopus trochiloides), in which we find evidence for gene flow between the adjacent, terminal populations of the ring species. We also analyze a global sampling of human populations, for which we largely recover the geography of the sampling, with support for significant histories of admixture in many samples. This new tool for understanding and visualizing patterns of population structure is implemented in a Bayesian framework in the program SpaceMix.

  6. Three-Dimensional Structure Determination of Botulinum Toxin

    National Research Council Canada - National Science Library

    Stevens, Ray

    1997-01-01

    ...) Based on the structure of the neurotoxin, understand the toxins mechanism of action. We have accomplished the first goal of determining the three-dimensional structure of the 150 kD botulinum neurotoxin serotype...

  7. Three-Dimensional Structure Determination of Botulinum Toxin

    National Research Council Canada - National Science Library

    Stevens, Ray

    1998-01-01

    ...) Based on the structure of the neurotoxin, understand the toxins mechanism of action. We have accomplished the first goal of determining the three-dimensional structure of the 150 kD botulinum neurotoxin serotype...

  8. Linking Spatial Structure and Community-Level Biotic Interactions through Cooccurrence and Time Series Modeling of the Human Intestinal Microbiota.

    Science.gov (United States)

    de Muinck, Eric J; Lundin, Knut E A; Trosvik, Pål

    2017-01-01

    The gastrointestinal (GI) microbiome is a densely populated ecosystem where dynamics are determined by interactions between microbial community members, as well as host factors. The spatial organization of this system is thought to be important in human health, yet this aspect of our resident microbiome is still poorly understood. In this study, we report significant spatial structure of the GI microbiota, and we identify general categories of spatial patterning in the distribution of microbial taxa along a healthy human GI tract. We further estimate the biotic interaction structure in the GI microbiota, both through time series and cooccurrence modeling of microbial community data derived from a large number of sequentially collected fecal samples. Comparison of these two approaches showed that species pairs involved in significant negative interactions had strong positive contemporaneous correlations and vice versa, while for species pairs without significant interactions, contemporaneous correlations were distributed around zero. We observed similar patterns when comparing these models to the spatial correlations between taxa identified in the adherent microbiota. This suggests that colocalization of microbial taxon pairs, and thus the spatial organization of the GI microbiota, is driven, at least in part, by direct or indirect biotic interactions. Thus, our study can provide a basis for an ecological interpretation of the biogeography of the human gut. IMPORTANCE The human gut microbiome is the subject of intense study due to its importance in health and disease. The majority of these studies have been based on the analysis of feces. However, little is known about how the microbial composition in fecal samples relates to the spatial distribution of microbial taxa along the gastrointestinal tract. By characterizing the microbial content both in intestinal tissue samples and in fecal samples obtained daily, we provide a conceptual framework for how the spatial

  9. The determinants of capital structure: evidence from Dutch panel data

    OpenAIRE

    Chen, Linda H.; Lensink, Robert; Sterken, Elmer

    1999-01-01

    This paper studies the determinants of capital structure choice of Dutch firms. Our main objective is to investigate whether and to what extent the main capital structure theories can explain capital structure choice of Dutch firms. A better understanding of the capital structure determinants in a rela-tively small yet open industrialized economy is essential not only for enrich-ing empirical studies in this field, but also for the purpose of cross country asset evaluation. By estimating a pa...

  10. How structure determines correlations in neuronal networks.

    Directory of Open Access Journals (Sweden)

    Volker Pernice

    2011-05-01

    Full Text Available Networks are becoming a ubiquitous metaphor for the understanding of complex biological systems, spanning the range between molecular signalling pathways, neural networks in the brain, and interacting species in a food web. In many models, we face an intricate interplay between the topology of the network and the dynamics of the system, which is generally very hard to disentangle. A dynamical feature that has been subject of intense research in various fields are correlations between the noisy activity of nodes in a network. We consider a class of systems, where discrete signals are sent along the links of the network. Such systems are of particular relevance in neuroscience, because they provide models for networks of neurons that use action potentials for communication. We study correlations in dynamic networks with arbitrary topology, assuming linear pulse coupling. With our novel approach, we are able to understand in detail how specific structural motifs affect pairwise correlations. Based on a power series decomposition of the covariance matrix, we describe the conditions under which very indirect interactions will have a pronounced effect on correlations and population dynamics. In random networks, we find that indirect interactions may lead to a broad distribution of activation levels with low average but highly variable correlations. This phenomenon is even more pronounced in networks with distance dependent connectivity. In contrast, networks with highly connected hubs or patchy connections often exhibit strong average correlations. Our results are particularly relevant in view of new experimental techniques that enable the parallel recording of spiking activity from a large number of neurons, an appropriate interpretation of which is hampered by the currently limited understanding of structure-dynamics relations in complex networks.

  11. Structured Additive Quantile Regression for Assessing the Determinants of Childhood Anemia in Rwanda.

    Science.gov (United States)

    Habyarimana, Faustin; Zewotir, Temesgen; Ramroop, Shaun

    2017-06-17

    Childhood anemia is among the most significant health problems faced by public health departments in developing countries. This study aims at assessing the determinants and possible spatial effects associated with childhood anemia in Rwanda. The 2014/2015 Rwanda Demographic and Health Survey (RDHS) data was used. The analysis was done using the structured spatial additive quantile regression model. The findings of this study revealed that the child's age; the duration of breastfeeding; gender of the child; the nutritional status of the child (whether underweight and/or wasting); whether the child had a fever; had a cough in the two weeks prior to the survey or not; whether the child received vitamin A supplementation in the six weeks before the survey or not; the household wealth index; literacy of the mother; mother's anemia status; mother's age at the birth are all significant factors associated with childhood anemia in Rwanda. Furthermore, significant structured spatial location effects on childhood anemia was found.

  12. Spatial structure changes in 4He at fixed density as a function of temperature

    International Nuclear Information System (INIS)

    Wirth, F.W.; Ewen, D.A.; Hallock, R.B.

    1983-01-01

    X-ray scattering techniques have been used to determine changes in spatial order when cooling 4 He below T/sub lambda/ at several fixed values of the density. The results show surprisingly little density dependence and are relevant to the discussion of condensate fraction determinations in 4 He

  13. Process and device for determining the spatial distribution of a radioactive substance

    International Nuclear Information System (INIS)

    1977-01-01

    This invention describes a process for determining the spatial distribution of a radioactive substance consisting in determining the positions and energy losses associated to the interactions of the Compton effect and the photoelectric interactions that occur owing to the emission of gamma photons by the radioactive material and in deducing an information on the spatial distribution of the radioactive substance, depending on the positions and energy losses associated to the interactions of the Compton effect of these gamma photons and the positions and energy losses associated to the subsequent photoelectric interactions of these same photons. The invention also concerns a processing system for identifying, among the signals representing the positions and energy losses of the interactions of the Compton effect and the photoelectric interactions of the gamma photons emitted by a radioactive source, those signals that are in keeping with the gamma photons that have been subjected to an initial interaction of the Compton effect and a second and last photoelectric interaction. It further concerns a system for determining, among the identified signals, the positions of the sources of several gamma photons. This detector of Compton interaction can be used with conventional Auger-type imaging system (gamma camera) for detecting photoelectric interactions [fr

  14. Determining building interior structures using compressive sensing

    Science.gov (United States)

    Lagunas, Eva; Amin, Moeness G.; Ahmad, Fauzia; Nájar, Montse

    2013-04-01

    We consider imaging of the building interior structures using compressive sensing (CS) with applications to through-the-wall imaging and urban sensing. We consider a monostatic synthetic aperture radar imaging system employing stepped frequency waveform. The proposed approach exploits prior information of building construction practices to form an appropriate sparse representation of the building interior layout. We devise a dictionary of possible wall locations, which is consistent with the fact that interior walls are typically parallel or perpendicular to the front wall. The dictionary accounts for the dominant normal angle reflections from exterior and interior walls for the monostatic imaging system. CS is applied to a reduced set of observations to recover the true positions of the walls. Additional information about interior walls can be obtained using a dictionary of possible corner reflectors, which is the response of the junction of two walls. Supporting results based on simulation and laboratory experiments are provided. It is shown that the proposed sparsifying basis outperforms the conventional through-the-wall CS model, the wavelet sparsifying basis, and the block sparse model for building interior layout detection.

  15. Environmental determinants and spatial mismatch of mammal diversity measures in Colombia

    Energy Technology Data Exchange (ETDEWEB)

    Gonzalez-Maya, J.F.; Arias-Alzate, A.; Granados-Peña, R.; Mancera-Rodriguez, N.J.; Ceballos, G.

    2016-07-01

    Including complementary diversity measures into ecological and conservation studies should improve our ability to link species assemblages to ecosystems. Recent measures such as phylogenetic and functional diversity have furthered our understanding of assemblage patterns of ecosystems and species, allowing improved inference of ecosystem function and conservation. We evaluated spatial patterns of taxonomic, phylogenetic and functional diversity of mammals in Colombia and identified their main environmental determinants, as well as interrelationships and spatial mismatch between the three measures. We found significant effects of elevation and precipitation on species richness, slope and species richness on phylogenetic diversity, and slope and phylogenetic diversity on functional diversity. We also identified a spatial mismatch of the three measures in some areas of the country: 12% of the country for species richness and 14% for phylogenetic and functional diversity. Our results highlight the importance of including species relationships within environmental drivers with biogeographical and distribution analyses and could facilitate selection of priority areas for conservation, especially when mismatch occurs between measures. (Author)

  16. Environmental determinants and spatial mismatch of mammal diversity measures in Colombia

    Directory of Open Access Journals (Sweden)

    González–Maya, J. F.

    2016-02-01

    Full Text Available Including complementary diversity measures into ecological and conservation studies should improve our ability to link species assemblages to ecosystems. Recent measures such as phylogenetic and functional diversity have furthered our understanding of assemblage patterns of ecosystems and species, allowing improved inference of ecosystem function and conservation. We evaluated spatial patterns of taxonomic, phylogenetic and functional diversity of mammals in Colombia and identified their main environmental determinants, as well as interrelationships and spatial mismatch between the three measures. We found significant effects of elevation and precipitation on species richness, slope and species richness on phylogenetic diversity, and slope and phylogenetic diversity on functional diversity. We also identified a spatial mismatch of the three measures in some areas of the country: 12% of the country for species richness and 14% for phylogenetic and functional diversity. Our results highlight the importance of including species relationships within environmental drivers with biogeographical and distribution analyses and could facilitate selection of priority areas for conservation, especially when mismatch occurs between measures.

  17. Language structure is partly determined by social structure.

    Directory of Open Access Journals (Sweden)

    Gary Lupyan

    Full Text Available BACKGROUND: Languages differ greatly both in their syntactic and morphological systems and in the social environments in which they exist. We challenge the view that language grammars are unrelated to social environments in which they are learned and used. METHODOLOGY/PRINCIPAL FINDINGS: We conducted a statistical analysis of >2,000 languages using a combination of demographic sources and the World Atlas of Language Structures--a database of structural language properties. We found strong relationships between linguistic factors related to morphological complexity, and demographic/socio-historical factors such as the number of language users, geographic spread, and degree of language contact. The analyses suggest that languages spoken by large groups have simpler inflectional morphology than languages spoken by smaller groups as measured on a variety of factors such as case systems and complexity of conjugations. Additionally, languages spoken by large groups are much more likely to use lexical strategies in place of inflectional morphology to encode evidentiality, negation, aspect, and possession. Our findings indicate that just as biological organisms are shaped by ecological niches, language structures appear to adapt to the environment (niche in which they are being learned and used. As adults learn a language, features that are difficult for them to acquire, are less likely to be passed on to subsequent learners. Languages used for communication in large groups that include adult learners appear to have been subjected to such selection. Conversely, the morphological complexity common to languages used in small groups increases redundancy which may facilitate language learning by infants. CONCLUSIONS/SIGNIFICANCE: We hypothesize that language structures are subjected to different evolutionary pressures in different social environments. Just as biological organisms are shaped by ecological niches, language structures appear to adapt to the

  18. Microwave Determination of the Structure of Pyridine

    Energy Technology Data Exchange (ETDEWEB)

    Bak, B.; Hansen, L.; Rastrup-Andersen, J. [Chemical Laboratory of the University of Copenhagen, Copenhagen (Denmark)

    1954-12-15

    2‐, 3‐, and 4‐mono‐deutero‐pyridine have been prepared and the microwave spectra recorded. For each of the isotopic species 11—12 transitions (Q‐ and R‐branch lines) were localized, a number of which could be identified by their Stark effect. For all three species rotational constants of high precision were calculated. The material so provided in connection with known rotational constants for ordinary pyridine is insufficient for a complete determination of the ten geometrical parameters of the molecule. Seven models with a choice of C – H distances close to the correct value (1.075‐1.085 A) were considered one of which was shown to be consistent with electron‐diffraction work and current valence theory. In this model d(N – C(2)) = 1.340±0.005; d(C(2) – C(3)) = 1.390±0.005; d(C(3) – C(4)) = 1.400±0.005 A. The valence angles in the aromatic ring (starting with the C(6) – N – C(2) angle) are: 116° 42′; 124° 00′; 118° 36′; 118° 06′.

  19. Interference competition as a key determinant for spatial distribution of mangrove crabs

    KAUST Repository

    Cannicci, Stefano

    2018-02-15

    The spatial distribution of mangrove crabs has been commonly associated with tree zonation and abiotic factors such as ground temperature and soil granulometry. Conversely, no studies were designed to investigate the role of competition for resources and predation in shaping crab distribution in mangroves, despite these biotic factors are recognised as key determinants for spatial patterns observed in the communities colonising rocky and sandy intertidal habitats.We studied floral and faunal assemblages in two zones of a Sri Lankan mangrove, a man-made upper intertidal level and a natural eulittoral, mid-shore one. Leaf choice experiments were designed to study both feeding rate and intra and inter-specific interactions for food of sesarmid crabs in the two habitats in order to better understand crab spatial distribution.The two intertidal belts differed in terms of floral composition and crab species abundance. The eulittoral zone was strongly dominated by Neosarmatium smithi, while within the elevated littoral fringe four sesarmids (N. smithi, N. asiaticum, N. malabaricum and Muradium tetragonum) were more evenly distributed. At both levels, all sesarmids showed to collect significantly more Bruguiera spp. and Rhizophora apiculata leaves than Excoecaria agallocha ones. There was no temporal segregation in feeding activity among the four species, resulting in a high interference competition for leaves. Regardless of the habitat, N. smithi was always successful in winning inter-specific fights.Our results showed that the elevated littoral fringe was more crowded with crabs, but was less favourable in terms of food availability and environmental conditions. The dominance of N. smithi in gathering mangrove leaves suggests that this species may segregate the other sesarmids into less favourable habitats. The present data strongly suggest for the first time that interference competition for food can contribute to shape mangrove crab spatial distribution.

  20. Interference competition as a key determinant for spatial distribution of mangrove crabs

    KAUST Repository

    Cannicci, Stefano; Fusi, Marco; Cimó , Filippo; Dahdouh-Guebas, Farid; Fratini, Sara

    2018-01-01

    The spatial distribution of mangrove crabs has been commonly associated with tree zonation and abiotic factors such as ground temperature and soil granulometry. Conversely, no studies were designed to investigate the role of competition for resources and predation in shaping crab distribution in mangroves, despite these biotic factors are recognised as key determinants for spatial patterns observed in the communities colonising rocky and sandy intertidal habitats.We studied floral and faunal assemblages in two zones of a Sri Lankan mangrove, a man-made upper intertidal level and a natural eulittoral, mid-shore one. Leaf choice experiments were designed to study both feeding rate and intra and inter-specific interactions for food of sesarmid crabs in the two habitats in order to better understand crab spatial distribution.The two intertidal belts differed in terms of floral composition and crab species abundance. The eulittoral zone was strongly dominated by Neosarmatium smithi, while within the elevated littoral fringe four sesarmids (N. smithi, N. asiaticum, N. malabaricum and Muradium tetragonum) were more evenly distributed. At both levels, all sesarmids showed to collect significantly more Bruguiera spp. and Rhizophora apiculata leaves than Excoecaria agallocha ones. There was no temporal segregation in feeding activity among the four species, resulting in a high interference competition for leaves. Regardless of the habitat, N. smithi was always successful in winning inter-specific fights.Our results showed that the elevated littoral fringe was more crowded with crabs, but was less favourable in terms of food availability and environmental conditions. The dominance of N. smithi in gathering mangrove leaves suggests that this species may segregate the other sesarmids into less favourable habitats. The present data strongly suggest for the first time that interference competition for food can contribute to shape mangrove crab spatial distribution.

  1. Determination of atomic cluster structure with cluster fusion algorithm

    DEFF Research Database (Denmark)

    Obolensky, Oleg I.; Solov'yov, Ilia; Solov'yov, Andrey V.

    2005-01-01

    We report an efficient scheme of global optimization, called cluster fusion algorithm, which has proved its reliability and high efficiency in determination of the structure of various atomic clusters.......We report an efficient scheme of global optimization, called cluster fusion algorithm, which has proved its reliability and high efficiency in determination of the structure of various atomic clusters....

  2. Ten-Structure as Strategy of Addition 1-20 by Involving Spatial Structuring Ability for First Grade Students

    Science.gov (United States)

    Salmah, Ummy; Putri, Ratu Ilma Indra; Somakim

    2015-01-01

    The aim of this study is to design learning activities that can support students to develop strategies for the addition of number 1 to 20 in the first grade by involving students' spatial structuring ability. This study was conducted in Indonesia by involving 27 students. In this paper, one of three activities is discussed namely ten-box activity.…

  3. Spatial variation in the parasite communities and genomic structure of urban rats in New York City.

    Science.gov (United States)

    Angley, L P; Combs, M; Firth, C; Frye, M J; Lipkin, I; Richardson, J L; Munshi-South, J

    2018-02-01

    Brown rats (Rattus norvegicus) are a globally distributed pest. Urban habitats can support large infestations of rats, posing a potential risk to public health from the parasites and pathogens they carry. Despite the potential influence of rodent-borne zoonotic diseases on human health, it is unclear how urban habitats affect the structure and transmission dynamics of ectoparasite and microbial communities (all referred to as "parasites" hereafter) among rat colonies. In this study, we use ecological data on parasites and genomic sequencing of their rat hosts to examine associations between spatial proximity, genetic relatedness and the parasite communities associated with 133 rats at five sites in sections of New York City with persistent rat infestations. We build on previous work showing that rats in New York carry a wide variety of parasites and report that these communities differ significantly among sites, even across small geographical distances. Ectoparasite community similarity was positively associated with geographical proximity; however, there was no general association between distance and microbial communities of rats. Sites with greater overall parasite diversity also had rats with greater infection levels and parasite species richness. Parasite community similarity among sites was not linked to genetic relatedness of rats, suggesting that these communities are not associated with genetic similarity among host individuals or host dispersal among sites. Discriminant analysis identified site-specific associations of several parasite species, suggesting that the presence of some species within parasite communities may allow researchers to determine the sites of origin for newly sampled rats. The results of our study help clarify the roles that colony structure and geographical proximity play in determining the ecology of R. norvegicus as a significant urban reservoir of zoonotic diseases. Our study also highlights the spatial variation present in urban

  4. Determination of the spatial response of neutron based analysers using a Monte Carlo based method

    International Nuclear Information System (INIS)

    Tickner, James

    2000-01-01

    One of the principal advantages of using thermal neutron capture (TNC, also called prompt gamma neutron activation analysis or PGNAA) or neutron inelastic scattering (NIS) techniques for measuring elemental composition is the high penetrating power of both the incident neutrons and the resultant gamma-rays, which means that large sample volumes can be interrogated. Gauges based on these techniques are widely used in the mineral industry for on-line determination of the composition of bulk samples. However, attenuation of both neutrons and gamma-rays in the sample and geometric (source/detector distance) effects typically result in certain parts of the sample contributing more to the measured composition than others. In turn, this introduces errors in the determination of the composition of inhomogeneous samples. This paper discusses a combined Monte Carlo/analytical method for estimating the spatial response of a neutron gauge. Neutron propagation is handled using a Monte Carlo technique which allows an arbitrarily complex neutron source and gauge geometry to be specified. Gamma-ray production and detection is calculated analytically which leads to a dramatic increase in the efficiency of the method. As an example, the method is used to study ways of reducing the spatial sensitivity of on-belt composition measurements of cement raw meal

  5. Spatial distribution of coefficients for determination of global radiation in Serbia

    Directory of Open Access Journals (Sweden)

    Nikolić Jugoslav L.

    2012-01-01

    Full Text Available The aim of this paper is a creation of the spatial distribution of the corresponding coefficients for the indirect determination of global radiation using all direct measurements data of this shortwave radiation balance component in Serbia in the standard climate period (1961-1990. Based on the global radiation direct measurements data recorded in the past and routine measurements/observations of cloudiness and sunshine duration, the spatial distribution coefficients maps required for calculation of global radiation were produced on the basis of sunshine/cloudiness in an arbitrary point on the territory of Serbia. Besides, a specific verification of the proposed empirical formula was performed. This paper contributes to a wide range of practical applications as direct measurements of global radiation are relatively rare, and are not carried out in Serbia today. Significant application is possible in the domain of renewable energy sources. The development of method for determination of the global radiation has an importance from the aspect of the environmental protection; however it also has an economic importance through applications in numerous commercial projects, as it does not require special measurements or additional financial investments.

  6. Structure of catalase determined by MicroED

    Science.gov (United States)

    Nannenga, Brent L; Shi, Dan; Hattne, Johan; Reyes, Francis E; Gonen, Tamir

    2014-01-01

    MicroED is a recently developed method that uses electron diffraction for structure determination from very small three-dimensional crystals of biological material. Previously we used a series of still diffraction patterns to determine the structure of lysozyme at 2.9 Å resolution with MicroED (Shi et al., 2013). Here we present the structure of bovine liver catalase determined from a single crystal at 3.2 Å resolution by MicroED. The data were collected by continuous rotation of the sample under constant exposure and were processed and refined using standard programs for X-ray crystallography. The ability of MicroED to determine the structure of bovine liver catalase, a protein that has long resisted atomic analysis by traditional electron crystallography, demonstrates the potential of this method for structure determination. DOI: http://dx.doi.org/10.7554/eLife.03600.001 PMID:25303172

  7. Nonequilibrium Conditions Explain Spatial Variability in Genetic Structuring of Little Penguin (Eudyptula minor)

    Science.gov (United States)

    Peucker, Amanda J.; Valautham, Sureen K.; Styan, Craig A.; Dann, Peter

    2015-01-01

    Factors responsible for spatial structuring of population genetic variation are varied, and in many instances there may be no obvious explanations for genetic structuring observed, or those invoked may reflect spurious correlations. A study of little penguins (Eudyptula minor) in southeast Australia documented low spatial structuring of genetic variation with the exception of colonies at the western limit of sampling, and this distinction was attributed to an intervening oceanographic feature (Bonney Upwelling), differences in breeding phenology, or sea level change. Here, we conducted sampling across the entire Australian range, employing additional markers (12 microsatellites and mitochondrial DNA, 697 individuals, 17 colonies). The zone of elevated genetic structuring previously observed actually represents the eastern half of a genetic cline, within which structuring exists over much shorter spatial scales than elsewhere. Colonies separated by as little as 27 km in the zone are genetically distinguishable, while outside the zone, homogeneity cannot be rejected at scales of up to 1400 km. Given a lack of additional physical or environmental barriers to gene flow, the zone of elevated genetic structuring may reflect secondary contact of lineages (with or without selection against interbreeding), or recent colonization and expansion from this region. This study highlights the importance of sampling scale to reveal the cause of genetic structuring. PMID:25833231

  8. New conception of the spatial structure of the galactic clusters: Pleiades, Praesepe and Coma Berenices

    International Nuclear Information System (INIS)

    Pejkov, Z.I.

    1990-01-01

    The spatial structure of the galactic cluster Pleiads, Praesepe and Coma Berenices in the dependence on different star magnitude intervals and on different limiting star magnitudes is investigated on the basis of the star density distribution functions which were published by Kholopov and Artyukhina. It is shown that the spatial structure of these clusters, similarly to the globular ones, systematically changes with the star magnitude of the included stars, starting from the brightest stars of the upper part of the main sequance and descending along the 'V, B-V' diagram for the clusters. This change consists in an increase of the spatial zones radii, following the same law, whith the transition to the fainter stars

  9. The evolution of intermediate castration virulence and ant coexistence in a spatially structured environment.

    Science.gov (United States)

    Szilágyi, András; Scheuring, István; Edwards, David P; Orivel, Jerome; Yu, Douglas W

    2009-12-01

    Theory suggests that spatial structuring should select for intermediate levels of virulence in parasites, but empirical tests are rare and have never been conducted with castration (sterilizing) parasites. To test this theory in a natural landscape, we construct a spatially explicit model of the symbiosis between the ant-plant Cordia nodosa and its two, protecting ant symbionts, Allomerus and Azteca. Allomerus is also a castration parasite, preventing fruiting to increase colony fecundity. Limiting the dispersal of Allomerus and host plant selects for intermediate castration virulence. Increasing the frequency of the mutualist, Azteca, selects for higher castration virulence in Allomerus, because seeds from Azteca-inhabited plants are a public good that Allomerus exploits. These results are consistent with field observations and, to our knowledge, provide the first empirical evidence supporting the hypothesis that spatial structure can reduce castration virulence and the first such evidence in a natural landscape for either mortality or castration virulence.

  10. Indirect effects of ecosystem engineering combine with consumer behaviour to determine the spatial distribution of herbivory.

    Science.gov (United States)

    Griffen, Blaine D; Riley, Megan E; Cannizzo, Zachary J; Feller, Ilka C

    2017-10-01

    Ecosystem engineers alter environments by creating, modifying or destroying habitats. The indirect impacts of ecosystem engineering on trophic interactions should depend on the combination of the spatial distribution of engineered structures and the foraging behaviour of consumers that use these structures as refuges. In this study, we assessed the indirect effects of ecosystem engineering by a wood-boring beetle in a neotropical mangrove forest system. We identified herbivory patterns in a dwarf mangrove forest on the archipelago of Twin Cays, Belize. Past wood-boring activity impacted more than one-third of trees through the creation of tree holes that are now used, presumably as predation or thermal refuge, by the herbivorous mangrove tree crab Aratus pisonii. The presence of these refuges had a significant impact on plant-animal interactions; herbivory was more than fivefold higher on trees influenced by tree holes relative to those that were completely isolated from these refuges. Additionally, herbivory decreased exponentially with increasing distance from tree holes. We use individual-based simulation modelling to demonstrate that the creation of these herbivory patterns depends on a combination of the use of engineered tree holes for refuge by tree crabs, and the use of two behaviour patterns in this species-site fidelity to a "home tree," and more frequent foraging near their home tree. We demonstrate that understanding the spatial distribution of herbivory in this system depends on combining both the use of ecosystem engineering structures with individual behavioural patterns of herbivores. © 2017 The Authors. Journal of Animal Ecology © 2017 British Ecological Society.

  11. Effect of Spatial Variability on Maintenance and Repair Decisions for Concrete Structures

    NARCIS (Netherlands)

    Li, Y.

    2004-01-01

    Due to the increasingly number of elder and deteriorating structures, maintenance is becoming a serious and more complex problem in most of the countries. A lot of studies have been carried out in this area for years. However, the fact that a lot of parameters show spatial random variability, which

  12. Spatial and dynamic organization of molecular structures in the cell nucleus

    NARCIS (Netherlands)

    Brouwer, Anne-Kee

    2010-01-01

    In this thesis we attempt to provide a better understanding of the principles that underlie the spatial dynamic organization of the cell nucleus. Chapter 1 reviews the current status of knowledge about the structural and functional organization of the cell nucleus. In chapter 2, the development of a

  13. Rapid and reliable protein structure determination via chemical shift threading.

    Science.gov (United States)

    Hafsa, Noor E; Berjanskii, Mark V; Arndt, David; Wishart, David S

    2018-01-01

    Protein structure determination using nuclear magnetic resonance (NMR) spectroscopy can be both time-consuming and labor intensive. Here we demonstrate how chemical shift threading can permit rapid, robust, and accurate protein structure determination using only chemical shift data. Threading is a relatively old bioinformatics technique that uses a combination of sequence information and predicted (or experimentally acquired) low-resolution structural data to generate high-resolution 3D protein structures. The key motivations behind using NMR chemical shifts for protein threading lie in the fact that they are easy to measure, they are available prior to 3D structure determination, and they contain vital structural information. The method we have developed uses not only sequence and chemical shift similarity but also chemical shift-derived secondary structure, shift-derived super-secondary structure, and shift-derived accessible surface area to generate a high quality protein structure regardless of the sequence similarity (or lack thereof) to a known structure already in the PDB. The method (called E-Thrifty) was found to be very fast (often chemical shift refinement, these results suggest that protein structure determination, using only NMR chemical shifts, is becoming increasingly practical and reliable. E-Thrifty is available as a web server at http://ethrifty.ca .

  14. METHOD FOR DETERMINING THE SPATIAL COORDINATES IN THE ACTIVE STEREOSCOPIC SYSTEM

    Directory of Open Access Journals (Sweden)

    Valery V. Korotaev

    2014-11-01

    Full Text Available The paper deals with the structural scheme of active stereoscopic system and algorithm of its operation, providing the fast calculation of the spatial coordinates. The system includes two identical cameras, forming a stereo pair, and a laser scanner, which provides vertical scanning of the space before the system by the laser beam. A separate synchronizer provides synchronous operation of the two cameras. The developed algorithm of the system operation is implemented in MATLAB. In the proposed algorithm, the influence of background light is eliminated by interframe processing. The algorithm is based on precomputation of coordinates for epipolar lines and corresponding points in stereoscopic image. These data are used to quick calculation of the three-dimensional coordinates of points that form the three-dimensional images of objects. Experiment description on a physical model is given. Experimental results confirm the efficiency of the proposed active stereoscopic system and its operation algorithm. The proposed scheme of active stereoscopic system and calculating method for the spatial coordinates can be recommended for creation of stereoscopic systems, operating in real time and at high processing speed: devices for face recognition, systems for the position control of railway track, automobile active safety systems.

  15. Effects of Thinning on the Spatial Structure of Larix principis-rupprechtii Plantation

    Directory of Open Access Journals (Sweden)

    Shengxing Ye

    2018-04-01

    Full Text Available Structure-based forest management is a scientific and easy-to-operate method for sustainable forest management. We analyzed the stand spatial structure of Larix principis-rupprechtii plantation under five reserve densities. The results indicated that with the decrease of densities after thinning, the average mingling degree and uniform angle index had an increasing tendency, but the amplitude was small. Most of the trees were in zero mix, and a few of them were in moderate, strong, and relatively strong mix; the horizontal distribution patterns were uniform or near-uniform random. The distribution of neighborhood comparison and opening degree changed with a fluctuant pattern, but thinning decreased the competitive intensities to some extent. A composite structure index (Ci was established, based on the relative importance of the above four indicators, to evaluate the overall effect of thinning on stand structure characteristics. The findings showed that Ci increased with the increase of thinning intensity, that is, the stand spatial structure became more complex. This indicated that Ci may be a simple and rapid indicator to evaluate the overall effect of thinning on stand spatial structure within densities after thinning.

  16. Structure in nascent carbon nanotubes revealed by spatially resolved Raman spectroscopy

    Energy Technology Data Exchange (ETDEWEB)

    Landois, Périne [CEA, IRAMIS, SPAM, Laboratoire Francis Perrin (CNRS URA 2453), 91191 Gif-sur-Yvette (France); Laboratoire de Physique des Solides, UMR CNRS 8502, Université Paris Sud 11, 91405 Orsay (France); Pinault, Mathieu [CEA, IRAMIS, SPAM, Laboratoire Francis Perrin (CNRS URA 2453), 91191 Gif-sur-Yvette (France); Huard, Mickaël [Laboratoire de Physique des Solides, UMR CNRS 8502, Université Paris Sud 11, 91405 Orsay (France); Reita, Valérie [Univ. Grenoble Alpes, Inst NEEL, F-38042 Grenoble (France); CNRS, Inst NEEL, F-38042 Grenoble (France); Rouzière, Stéphan; Launois, Pascale [Laboratoire de Physique des Solides, UMR CNRS 8502, Université Paris Sud 11, 91405 Orsay (France); Mayne-L' Hermite, Martine [CEA, IRAMIS, SPAM, Laboratoire Francis Perrin (CNRS URA 2453), 91191 Gif-sur-Yvette (France); Bendiab, Nedjma, E-mail: nedjma.bendiab@grenoble.cnrs.fr [Univ. Grenoble Alpes, Inst NEEL, F-38042 Grenoble (France); CNRS, Inst NEEL, F-38042 Grenoble (France)

    2014-10-01

    The understanding of carbon nanotube (CNT) growth is crucial for the control of their production. In particular, the identification of structural changes of carbon possibly occurring near the catalyst particle in the very early stages of their formation is of high interest. In this study, samples of nascent CNT obtained during nucleation step and samples of vertically aligned CNT obtained during growth step are analysed by combined spatially resolved Raman spectroscopy and X-ray diffraction measurements. Spatially resolved Raman spectroscopy reveals that iron-based phases and carbon phases are co-localized at the same position, and indicates that sp{sup 2} carbon nucleates preferentially on iron-based particles during this nucleation step. Depth scan Raman spectroscopy analysis, performed on nascent CNT, highlights that carbon structural organisation is significantly changing from defective graphene layers surrounding the iron-based particles at their base up to multi-walled nanotube structures in the upper part of iron-based particles. - Highlights: • Spatial co-localization of iron and carbon structures in nascent carbon nanotubes • Imaging local carbon structure changes along catalyst particles by Raman spectroscopy. • In nascent nanotubes, significant structural changes occur along catalyst particle.

  17. Determination of spatial resolution of positron emission tomograph of clear PET-XPAD3/CT system

    Energy Technology Data Exchange (ETDEWEB)

    Olaya D, H.; Martinez O, S. A. [Universidad Pedagogica y Tecnologica de Colombia, Grupo de Fisica Nuclear Aplicada y Simulacion, 150003 Tunja, Boyaca (Colombia); Morel, C. [Centre de Physique des Particules de Marseille, ImXgam Group, 13009 Marseille (France); Castro, H. F. [Universidad Nacional de Colombia, Physics Department, Carrera 45 No. 26-85, Bogota (Colombia)

    2016-10-15

    Based on the National Electrical Manufacturers Association (Nema), using the Amine software to construction of sinograms and using a radioactive source {sup 22}Na that emitting positrons were made calculations for determine spatial resolution of ring array system of phoswich detectors of positron emission tomograph included in the Clear PET-XPAD3/CT prototype for small animals made in the laboratories of CCPM and whose project is led by the research group ImXgam. The radioactive source {sup 22}Na approximately 9 MBq of activity, with spherical shape and diameter of 0.57 mm immersed in a plexiglas disc was located at the geometric center of tomographic system with a Field of View (Fov) of 35 mm in the axial and transverse directions. Displacements of radioactive source were performed on the three cartesian axes and was rebuilt a sinogram for each axis. The shape of sinogram allow describe the correct position and the maximum efficiency of each detector. Subsequently, was carried out a scanning in each one of three spatial axes taking an enough distance covering the dimensions of radioactive source, were recorded data for each one of phoswich detector crystals which are aligned in the axis of movement. The process was repeated for other axes and then was offsetting the radioactive source with respect to the Fov and were calculated FWHM (Full Width at Half Maximum) and FWTM (Full Width at Tenth Maximum) values and performing statistics of these values with parabolic fitting, the latter setting allows to obtain parameters of spatial resolution of system. (Author)

  18. Environmental determinants of the spatial distribution of Echinococcus multilocularis in Hungary.

    Science.gov (United States)

    Tolnai, Z; Széll, Z; Sréter, T

    2013-12-06

    Human alveolar echinococcosis, caused by the metacestode stage of Echinococcus multilocularis, is one of the most pathogenic zoonoses in the temperate and arctic region of the Northern Hemisphere. To investigate the spatial distribution of E. multilocularis and the factors influencing this distribution in the recently identified endemic area of Hungary, 1612 red fox (Vulpes vulpes) carcasses were randomly collected from the whole Hungarian territory from November 2008 to February 2009 and from November 2012 to February 2013. The topographic positions of foxes were recorded in geographic information system database. The digitized home ranges and the vector data were used to calculate the altitude, mean annual temperature, annual precipitation, soil water retention, soil permeability, areas of land cover types and the presence and buffer zone of permanent water bodies within the fox territories. The intestinal mucosa from all the foxes was tested by sedimentation and counting technique. Multiple regression analysis was performed with environmental parameter values and E. multilocularis counts. The spatial distribution of the parasite was clumped. Based on statistical analysis, mean annual temperature and annual precipitation were the major determinants of the spatial distribution of E. multilocularis in Hungary. It can be attributed to the sensitivity of E. multilocularis eggs to high temperatures and desiccation. Although spreading and emergence of the parasite was observed in Hungary before 2009, the prevalence and intensity of infection did not change significantly between the two collection periods. It can be explained by the considerably lower annual precipitation before the second collection period. Copyright © 2013 Elsevier B.V. All rights reserved.

  19. Environmental determinants of the spatial distribution of Alaria alata in Hungary.

    Science.gov (United States)

    Széll, Z; Tolnai, Z; Sréter, T

    2013-11-15

    Alaria alata is a potential zoonotic parasite, which is widely distributed in Eurasia. To assess the risk of human infection, it is important to know the spatial distribution pattern of the parasite and factors influencing this pattern. To investigate these relationships, 1612 red fox (Vulpes vulpes) carcasses were randomly collected from the whole Hungarian territory, and the intestines were examined by sedimentation and counting technique. The spatial distribution of the parasite was highly clumped. The topographic positions where the foxes had been shot and the intensity of infections were recorded in geographic information system database. Digitized home ranges of infected and uninfected foxes were analysed on the background of geographic vector data of altitude, land cover types, permanent waters, mean annual temperature, annual precipitation and soil permeability. Multiple regression analysis was performed with environmental parameter values and A. alata scores. Based on the statistical analysis, lack of permanent waters, mean annual temperature, annual precipitation and soil permeability were the major determinants of the spatial distribution of A. alata. It can be explained by the use of biotopes by the intermediate hosts. The lack of permanent waters results in the use of temporary waters by the second intermediate hosts, frogs. The higher temperature, the lower precipitation and the higher soil permeability lead to earlier desiccation of temporary waters, and tadpoles and frogs infected with mesocercariae can be more easily predated by the final hosts (e.g., red foxes). Moreover, temporary waters are more easily contaminated with the faeces of the final hosts containing eggs than permanent waters. Therefore, high infection rate with A. alata can be expected mainly in lowland areas, where the hydrogeography of permanent waters is less complex, the precipitation is lower, the mean temperature and the soil permeability are higher than in highland areas

  20. Determination of spatial resolution of positron emission tomograph of clear PET-XPAD3/CT system

    International Nuclear Information System (INIS)

    Olaya D, H.; Martinez O, S. A.; Morel, C.; Castro, H. F.

    2016-10-01

    Based on the National Electrical Manufacturers Association (Nema), using the Amine software to construction of sinograms and using a radioactive source "2"2Na that emitting positrons were made calculations for determine spatial resolution of ring array system of phoswich detectors of positron emission tomograph included in the Clear PET-XPAD3/CT prototype for small animals made in the laboratories of CCPM and whose project is led by the research group ImXgam. The radioactive source "2"2Na approximately 9 MBq of activity, with spherical shape and diameter of 0.57 mm immersed in a plexiglas disc was located at the geometric center of tomographic system with a Field of View (Fov) of 35 mm in the axial and transverse directions. Displacements of radioactive source were performed on the three cartesian axes and was rebuilt a sinogram for each axis. The shape of sinogram allow describe the correct position and the maximum efficiency of each detector. Subsequently, was carried out a scanning in each one of three spatial axes taking an enough distance covering the dimensions of radioactive source, were recorded data for each one of phoswich detector crystals which are aligned in the axis of movement. The process was repeated for other axes and then was offsetting the radioactive source with respect to the Fov and were calculated FWHM (Full Width at Half Maximum) and FWTM (Full Width at Tenth Maximum) values and performing statistics of these values with parabolic fitting, the latter setting allows to obtain parameters of spatial resolution of system. (Author)

  1. Structured Spatial Modeling and Mapping of Domestic Violence Against Women of Reproductive Age in Rwanda.

    Science.gov (United States)

    Habyarimana, Faustin; Zewotir, Temesgen; Ramroop, Shaun

    2018-03-01

    The main objective of this study was to assess the risk factors and spatial correlates of domestic violence against women of reproductive age in Rwanda. A structured spatial approach was used to account for the nonlinear nature of some covariates and the spatial variability on domestic violence. The nonlinear effect was modeled through second-order random walk, and the structured spatial effect was modeled through Gaussian Markov Random Fields specified as an intrinsic conditional autoregressive model. The data from the Rwanda Demographic and Health Survey 2014/2015 were used as an application. The findings of this study revealed that the risk factors of domestic violence against women are the wealth quintile of the household, the size of the household, the husband or partner's age, the husband or partner's level of education, ownership of the house, polygamy, the alcohol consumption status of the husband or partner, the woman's perception of wife-beating attitude, and the use of contraceptive methods. The study also highlighted the significant spatial variation of domestic violence against women at district level.

  2. Uniform functional structure across spatial scales in an intertidal benthic assemblage.

    Science.gov (United States)

    Barnes, R S K; Hamylton, Sarah

    2015-05-01

    To investigate the causes of the remarkable similarity of emergent assemblage properties that has been demonstrated across disparate intertidal seagrass sites and assemblages, this study examined whether their emergent functional-group metrics are scale related by testing the null hypothesis that functional diversity and the suite of dominant functional groups in seagrass-associated macrofauna are robust structural features of such assemblages and do not vary spatially across nested scales within a 0.4 ha area. This was carried out via a lattice of 64 spatially referenced stations. Although densities of individual components were patchily dispersed across the locality, rank orders of importance of the 14 functional groups present, their overall functional diversity and evenness, and the proportions of the total individuals contained within each showed, in contrast, statistically significant spatial uniformity, even at areal scales functional groups in their geospatial context also revealed weaker than expected levels of spatial autocorrelation, and then only at the smaller scales and amongst the most dominant groups, and only a small number of negative correlations occurred between the proportional importances of the individual groups. In effect, such patterning was a surface veneer overlying remarkable stability of assemblage functional composition across all spatial scales. Although assemblage species composition is known to be homogeneous in some soft-sediment marine systems over equivalent scales, this combination of patchy individual components yet basically constant functional-group structure seems as yet unreported. Copyright © 2015 Elsevier Ltd. All rights reserved.

  3. Spatial genetic structure in continuous and fragmented populations of Pinus pinaster Aiton.

    Science.gov (United States)

    De-Lucas, A I; González-Martínez, S C; Vendramin, G G; Hidalgo, E; Heuertz, M

    2009-11-01

    Habitat fragmentation, i.e., the reduction of populations into small isolated remnants, is expected to increase spatial genetic structure (SGS) in plant populations through nonrandom mating, lower population densities and potential aggregation of reproductive individuals. We investigated the effects of population size reduction and genetic isolation on SGS in maritime pine (Pinus pinaster Aiton) using a combined experimental and simulation approach. Maritime pine is a wind-pollinated conifer which has a scattered distribution in the Iberian Peninsula as a result of forest fires and habitat fragmentation. Five highly polymorphic nuclear microsatellites were genotyped in a total of 394 individuals from two population pairs from the Iberian Peninsula, formed by one continuous and one fragmented population each. In agreement with predictions, SGS was significant and stronger in fragments (Sp = 0.020 and Sp = 0.026) than in continuous populations, where significant SGS was detected for one population only (Sp = 0.010). Simulations suggested that under fat-tailed dispersal, small population size is a stronger determinant of SGS than genetic isolation, while under normal dispersal, genetic isolation has a stronger effect. SGS was always stronger in real populations than in simulations, except if unrealistically narrow dispersal and/or high variance of reproductive success were modelled (even when accounting for potential overestimation of SGS in real populations as a result of short-distance sampling). This suggests that factors such as nonrandom mating or selection not considered in the simulations were additionally operating on SGS in Iberian maritime pine populations.

  4. DETERMINATION OF SPATIAL INTEGRATION AND SUBSTITUTION OF FOREIGN RICE FOR LOCAL RICE IN GHANA

    Directory of Open Access Journals (Sweden)

    Philip Kofi ADOM

    2014-11-01

    Full Text Available This study tested for spatial integration in the rice market and the substitution of imported rice for local rice in Ghana. It is established that the markets for domestic imported rice are well-integrated, but not complete. The imperfect spatial integration of domestic foreign rice markets implies that the market provides opportunities for arbitrage. Price leadership roles are found to be determined by the kind of sub-inter-regional-trade network defined. However, in all, the Accra market emerged as a dominant market leader in the domestic foreign rice market. There is evidence of significant regional substitution of foreign rice for local rice in the long run, but the result is mixed in the short run. The result that local rice is not a perfect substitute for imported rice implies that price disincentive measures such as increasing the import tariffs on foreign rice will only produce a mild effect on increasing the producer price faced by local rice farmers, but aggravate the burden on households’ budget.

  5. Determination of spatially dependent diffusion parameters in bovine bone using Kalman filter.

    Science.gov (United States)

    Shokry, Abdallah; Ståhle, Per; Svensson, Ingrid

    2015-11-07

    Although many studies have been made for homogenous constant diffusion, bone is an inhomogeneous material. It has been suggested that bone porosity decreases from the inner boundaries to the outer boundaries of the long bones. The diffusivity of substances in the bone matrix is believed to increase as the bone porosity increases. In this study, an experimental set up is used where bovine bone samples, saturated with potassium chloride (KCl), were put into distilled water and the conductivity of the water was followed. Chloride ions in the bone samples escaped out in the water through diffusion and the increase of the conductivity was measured. A one-dimensional, spatially dependent mathematical model describing the diffusion process is used. The diffusion parameters in the model are determined using a Kalman filter technique. The parameters for spatially dependent at endosteal and periosteal surfaces are found to be (12.8 ± 4.7) × 10(-11) and (5 ± 3.5) × 10(-11)m(2)/s respectively. The mathematical model function using the obtained diffusion parameters fits very well with the experimental data with mean square error varies from 0.06 × 10(-6) to 0.183 × 10(-6) (μS/m)(2). Copyright © 2015 Elsevier Ltd. All rights reserved.

  6. De novo protein structure determination using sparse NMR data

    International Nuclear Information System (INIS)

    Bowers, Peter M.; Strauss, Charlie E.M.; Baker, David

    2000-01-01

    We describe a method for generating moderate to high-resolution protein structures using limited NMR data combined with the ab initio protein structure prediction method Rosetta. Peptide fragments are selected from proteins of known structure based on sequence similarity and consistency with chemical shift and NOE data. Models are built from these fragments by minimizing an energy function that favors hydrophobic burial, strand pairing, and satisfaction of NOE constraints. Models generated using this procedure with ∼1 NOE constraint per residue are in some cases closer to the corresponding X-ray structures than the published NMR solution structures. The method requires only the sparse constraints available during initial stages of NMR structure determination, and thus holds promise for increasing the speed with which protein solution structures can be determined

  7. Spatial structures of the environment and of dispersal impact species distribution in competitive metacommunities.

    Science.gov (United States)

    Ai, Dexiecuo; Gravel, Dominique; Chu, Chengjin; Wang, Gang

    2013-01-01

    The correspondence between species distribution and the environment depends on species' ability to track favorable environmental conditions (via dispersal) and to maintain competitive hierarchy against the constant influx of migrants (mass effect) and demographic stochasticity (ecological drift). Here we report a simulation study of the influence of landscape structure on species distribution. We consider lottery competition for space in a spatially heterogeneous environment, where the landscape is represented as a network of localities connected by dispersal. We quantified the contribution of neutrality and species sorting to their spatial distribution. We found that neutrality increases and the strength of species-sorting decreases with the centrality of a community in the landscape when the average dispersal among communities is low, whereas the opposite was found at elevated dispersal. We also found that the strength of species-sorting increases with environmental heterogeneity. Our results illustrate that spatial structure of the environment and of dispersal must be taken into account for understanding species distribution. We stress the importance of spatial geographic structure on the relative importance of niche vs. neutral processes in controlling community dynamics.

  8. Spatial structures of the environment and of dispersal impact species distribution in competitive metacommunities.

    Directory of Open Access Journals (Sweden)

    Dexiecuo Ai

    Full Text Available The correspondence between species distribution and the environment depends on species' ability to track favorable environmental conditions (via dispersal and to maintain competitive hierarchy against the constant influx of migrants (mass effect and demographic stochasticity (ecological drift. Here we report a simulation study of the influence of landscape structure on species distribution. We consider lottery competition for space in a spatially heterogeneous environment, where the landscape is represented as a network of localities connected by dispersal. We quantified the contribution of neutrality and species sorting to their spatial distribution. We found that neutrality increases and the strength of species-sorting decreases with the centrality of a community in the landscape when the average dispersal among communities is low, whereas the opposite was found at elevated dispersal. We also found that the strength of species-sorting increases with environmental heterogeneity. Our results illustrate that spatial structure of the environment and of dispersal must be taken into account for understanding species distribution. We stress the importance of spatial geographic structure on the relative importance of niche vs. neutral processes in controlling community dynamics.

  9. Cryo-EM Structure Determination Using Segmented Helical Image Reconstruction.

    Science.gov (United States)

    Fromm, S A; Sachse, C

    2016-01-01

    Treating helices as single-particle-like segments followed by helical image reconstruction has become the method of choice for high-resolution structure determination of well-ordered helical viruses as well as flexible filaments. In this review, we will illustrate how the combination of latest hardware developments with optimized image processing routines have led to a series of near-atomic resolution structures of helical assemblies. Originally, the treatment of helices as a sequence of segments followed by Fourier-Bessel reconstruction revealed the potential to determine near-atomic resolution structures from helical specimens. In the meantime, real-space image processing of helices in a stack of single particles was developed and enabled the structure determination of specimens that resisted classical Fourier helical reconstruction and also facilitated high-resolution structure determination. Despite the progress in real-space analysis, the combination of Fourier and real-space processing is still commonly used to better estimate the symmetry parameters as the imposition of the correct helical symmetry is essential for high-resolution structure determination. Recent hardware advancement by the introduction of direct electron detectors has significantly enhanced the image quality and together with improved image processing procedures has made segmented helical reconstruction a very productive cryo-EM structure determination method. © 2016 Elsevier Inc. All rights reserved.

  10. Spatial variability of hydraulic conductivity of an unconfined sandy aquifer determined by a mini slug test

    DEFF Research Database (Denmark)

    Bjerg, Poul Løgstrup; Hinsby, Klaus; Christensen, Thomas Højlund

    1992-01-01

    The spatial variability of the hydraulic conductivity in a sandy aquifer has been determined by a mini slug test method. The hydraulic conductivity (K) of the aquifer has a geometric mean of 5.05 × 10−4 m s−1, and an overall variance of 1n K equal to 0.37 which corresponds quite well to the results...... obtained by two large scale tracer experiments performed in the aquifer. A geological model of the aquifer based on 31 sediment cores, proposed three hydrogeological layers in the aquifer concurrent with the vertical variations observed with respect to hydraulic conductivity. The horizontal correlation......, to be in the range of 0.3–0.5 m compared with a value of 0.42 m obtained in one of the tracer tests performed....

  11. Spatial confinement of acoustic and optical waves in stubbed slab structure as optomechanical resonator

    Energy Technology Data Exchange (ETDEWEB)

    Li, Changsheng, E-mail: lcs135@163.com; Huang, Dan; Guo, Jierong

    2015-02-20

    We theoretically demonstrate that acoustic waves and optical waves can be spatially confined in the same micro-cavity by specially designed stubbed slab structure. The proposed structure presents both phononic and photonic band gaps from finite element calculation. The creation of cavity mode inside the band gap region provides strong localization of phonon and photon in the defect region. The practical parameters to inject cavity and work experimentally at telecommunication range are discussed. This structure can be precisely fabricated, hold promises to enhance acousto-optical interactions and design new applications as optomechanical resonator. - Highlights: • A resonator simultaneously supports acoustic and optical modes. • Strong spatial confinement and slow group velocity. • Potential to work as active optomechanical resonator.

  12. Spatial structure of an individual-based plant–pollinator network

    DEFF Research Database (Denmark)

    Dupont, Yoko Luise; Nielsen, Kristian Trøjelsgaard; Hagen, Melanie

    2014-01-01

    The influence of space on the structure (e.g. modularity) of complex ecological networks remains largely unknown. Here, we sampled an individual-based plant–pollinator network by following the movements and flower visits of marked bumblebee individuals within a population of thistle plants...... for which the identities and spatial locations of stems were mapped in a 50  50 m study plot. The plant–pollinator network was dominated by parasitic male bumblebees and had a significantly modular structure, with four identified modules being clearly separated in space. This indicated that individual....... This demonstrated that individual-based plant–pollinator networks are influenced by both the spatial structure of plant populations and individual-specific plant traits. Additionally, bumblebee individuals with long observation times were important for both the connectivity between and within modules. The latter...

  13. Disentangling environmental and spatial effects on phylogenetic structure of angiosperm tree communities in China.

    Science.gov (United States)

    Qian, Hong; Chen, Shengbin; Zhang, Jin-Long

    2017-07-17

    Niche-based and neutrality-based theories are two major classes of theories explaining the assembly mechanisms of local communities. Both theories have been frequently used to explain species diversity and composition in local communities but their relative importance remains unclear. Here, we analyzed 57 assemblages of angiosperm trees in 0.1-ha forest plots across China to examine the effects of environmental heterogeneity (relevant to niche-based processes) and spatial contingency (relevant to neutrality-based processes) on phylogenetic structure of angiosperm tree assemblages distributed across a wide range of environment and space. Phylogenetic structure was quantified with six phylogenetic metrics (i.e., phylogenetic diversity, mean pairwise distance, mean nearest taxon distance, and the standardized effect sizes of these three metrics), which emphasize on different depths of evolutionary histories and account for different degrees of species richness effects. Our results showed that the variation in phylogenetic metrics explained independently by environmental variables was on average much greater than that explained independently by spatial structure, and the vast majority of the variation in phylogenetic metrics was explained by spatially structured environmental variables. We conclude that niche-based processes have played a more important role than neutrality-based processes in driving phylogenetic structure of angiosperm tree species in forest communities in China.

  14. Spatial structure and scaling of macropores in hydrological process at small catchment scale

    Science.gov (United States)

    Silasari, Rasmiaditya; Broer, Martine; Blöschl, Günter

    2013-04-01

    During rainfall events, the formation of overland flow can occur under the circumstances of saturation excess and/or infiltration excess. These conditions are affected by the soil moisture state which represents the soil water content in micropores and macropores. Macropores act as pathway for the preferential flows and have been widely studied locally. However, very little is known about their spatial structure and conductivity of macropores and other flow characteristic at the catchment scale. This study will analyze these characteristics to better understand its importance in hydrological processes. The research will be conducted in Petzenkirchen Hydrological Open Air Laboratory (HOAL), a 64 ha catchment located 100 km west of Vienna. The land use is divided between arable land (87%), pasture (5%), forest (6%) and paved surfaces (2%). Video cameras will be installed on an agricultural field to monitor the overland flow pattern during rainfall events. A wireless soil moisture network is also installed within the monitored area. These field data will be combined to analyze the soil moisture state and the responding surface runoff occurrence. The variability of the macropores spatial structure of the observed area (field scale) then will be assessed based on the topography and soil data. Soil characteristics will be supported with laboratory experiments on soil matrix flow to obtain proper definitions of the spatial structure of macropores and its variability. A coupled physically based distributed model of surface and subsurface flow will be used to simulate the variability of macropores spatial structure and its effect on the flow behaviour. This model will be validated by simulating the observed rainfall events. Upscaling from field scale to catchment scale will be done to understand the effect of macropores variability on larger scales by applying spatial stochastic methods. The first phase in this study is the installation and monitoring configuration of video

  15. Determinants of the geographical distribution of endemic giardiasis in Ontario, Canada: a spatial modelling approach.

    Science.gov (United States)

    Odoi, A; Martin, S W; Michel, P; Holt, J; Middleton, D; Wilson, J

    2004-10-01

    Giardiasis surveillance data as well as drinking water, socioeconomic and land-use data were used in spatial regression models to investigate determinants of the geographic distribution of endemic giardiasis in southern Ontario. Higher giardiasis rates were observed in areas using surface water [rate ratio (RR) 2.36, 95 % CI 1.38-4.05] and in rural areas (RR 1.79, 95 % CI 1.32-2.37). Lower rates were observed in areas using filtered water (RR 0.55, 95 % CI 0.42-0.94) and in those with high median income (RR 0.62, 95 % CI 0.42-0.92). Chlorination of drinking water, cattle density and intensity of manure application on farmland were not significant determinants. The study shows that waterborne transmission plays an important role in giardiasis distribution in southern Ontario and that well-collected routine surveillance data could be useful for investigation of disease determinants and identification of high-risk communities. This information is useful in guiding decisions on control strategies.

  16. Determinants of fish assemblage structure in Northwestern Great Plains streams

    Science.gov (United States)

    Mullen, J.A.; Bramblett, R.G.; Guy, C.S.; Zale, A.V.; Roberts, D.W.

    2011-01-01

    Prairie streams are known for their harsh and stochastic physical conditions, and the fish assemblages therein have been shown to be temporally variable. We assessed the spatial and temporal variation in fish assemblage structure in five intermittent, adventitious northwestern Great Plains streams representing a gradient of watershed areas. Fish assemblages and abiotic conditions varied more spatially than temporally. The most important variables explaining fish assemblage structure were longitudinal position and the proportion of fine substrates. The proportion of fine substrates increased proceeding upstream, approaching 100% in all five streams, and species richness declined upstream with increasing fine substrates. High levels of fine substrate in the upper reaches appeared to limit the distribution of obligate lithophilic fish species to reaches further downstream. Species richness and substrates were similar among all five streams at the lowermost and uppermost sites. However, in the middle reaches, species richness increased, the amount of fine substrate decreased, and connectivity increased as watershed area increased. Season and some dimensions of habitat (including thalweg depth, absolute distance to the main-stem river, and watershed size) were not essential in explaining the variation in fish assemblages. Fish species richness varied more temporally than overall fish assemblage structure did because common species were consistently abundant across seasons, whereas rare species were sometimes absent or perhaps not detected by sampling. The similarity in our results among five streams varying in watershed size and those from other studies supports the generalization that spatial variation exceeds temporal variation in the fish assemblages of prairie and warmwater streams. Furthermore, given longitudinal position, substrate, and stream size, general predictions regarding fish assemblage structure and function in prairie streams are possible. ?? American

  17. Determinants of capital structure and financial crisis impact: evidence

    OpenAIRE

    Proença, Pedro Miguel Correia

    2012-01-01

    Mestrado em contabilidade The objectives of this empirical work are to investigate the determinants of Portuguese SMEs capital structure, evaluate whether and how the impacts of those determinants affect the debt ratios and examine the effects of financial crisis and industry on Portuguese SMEs capital structure. The sample used considers the period 2007-2010, resulting in 12.857 Portugues e SMEs per year observations. R...

  18. Corticostriatal Divergent Function in Determining the Temporal and Spatial Properties of Motor Tics.

    Science.gov (United States)

    Israelashvili, Michal; Bar-Gad, Izhar

    2015-12-16

    Striatal disinhibition leads to the formation of motor tics resembling those expressed during Tourette syndrome and other tic disorders. The spatial properties of these tics are dependent on the location of the focal disinhibition within the striatum; however, the factors affecting the temporal properties of tic expression are still unknown. Here, we used microstimulation within the motor cortex of freely behaving rats before and after striatal disinhibition to explore the factors underlying the timing of individual tics. Cortical activation determined the timing of individual tics via an accumulation process of inputs that was dependent on the frequency and amplitude of the inputs. The resulting tics and their neuronal representation within the striatum were highly stereotypic and independent of the cortical activity properties. The generation of tics was limited by absolute and relative tic refractory periods that were derived from an internal striatal state. Thus, the precise time of the tic expression depends on the interaction between the summation of incoming excitatory inputs to the striatum and the timing of the previous tic. A data-driven computational model of corticostriatal function closely replicated the temporal properties of tic generation and enabled the prediction of tic timing based on incoming cortical activity and tic history. These converging experimental and computational findings suggest a clear functional dichotomy within the corticostriatal network, pointing to disparate temporal (cortical) versus spatial (striatal) encoding. Thus, the abnormal striatal inhibition typical of Tourette syndrome and other tic disorders results in tics due to cortical activation of the abnormal striatal network. The factors underlying the temporal properties of tics expressed in Tourette syndrome and other tic disorders have eluded clinicians and scientists for decades. In this study, we highlight the key role of corticostriatal activity in determining the

  19. Transaction cost determinants of credit governance structures of ...

    African Journals Online (AJOL)

    This paper explores transaction cost determinants of credit governance structures (CGS) of commercial banks in Tanzania. Descriptive statistics, linear regression model, binary and multinomial logistic regression models were employed for analysis. Findings revealed four modes of credit governance structures that are ...

  20. The Determinants of Capital Structure: Some Evidence from Banks

    OpenAIRE

    Heider, Florian; Gropp, Reint

    2008-01-01

    This paper documents that standard cross-sectional determinants of firm leverage also apply to the capital structure of large banks in the United States and Europe. We find a remarkable consistency in sign, significance and economic magnitude. Like non-financial firms, banks appear to have stable capital structures at levels that are specific to each individual bank. The results suggest that capital requirements may only be of second-order importance for banks’ capital structures and confirm ...

  1. Spatial distribution and optimal harvesting of an age-structured population in a fluctuating environment.

    Science.gov (United States)

    Engen, Steinar; Lee, Aline Magdalena; Sæther, Bernt-Erik

    2018-02-01

    We analyze a spatial age-structured model with density regulation, age specific dispersal, stochasticity in vital rates and proportional harvesting. We include two age classes, juveniles and adults, where juveniles are subject to logistic density dependence. There are environmental stochastic effects with arbitrary spatial scales on all birth and death rates, and individuals of both age classes are subject to density independent dispersal with given rates and specified distributions of dispersal distances. We show how to simulate the joint density fields of the age classes and derive results for the spatial scales of all spatial autocovariance functions for densities. A general result is that the squared scale has an additive term equal to the squared scale of the environmental noise, corresponding to the Moran effect, as well as additive terms proportional to the dispersal rate and variance of dispersal distance for the age classes and approximately inversely proportional to the strength of density regulation. We show that the optimal harvesting strategy in the deterministic case is to harvest only juveniles when their relative value (e.g. financial) is large, and otherwise only adults. With increasing environmental stochasticity there is an interval of increasing length of values of juveniles relative to adults where both age classes should be harvested. Harvesting generally tends to increase all spatial scales of the autocovariances of densities. Copyright © 2017. Published by Elsevier Inc.

  2. Variations in the Spatial Distribution of Areas of Economic Growth and Stagnation in Poland: Determinants and Consequences

    Directory of Open Access Journals (Sweden)

    Churski Paweł

    2014-06-01

    Full Text Available This study seeks to identify the spatial distribution of and changes in areas of economic growth and stagnation in Poland resulting from spatial differences in the process of the country’s socio-economic advancement. The research covered two spatial systems, NUTS 2 and NUTS 4, and embraced the following steps: (1 identification of the spatial distribution of areas of economic growth and stagnation, by region and subregion, and of its determinants; (2 analysis of variations in the spatial distribution of areas of economic growth and stagnation, by region and subregion, and of its consequences; and (3 conclusions from the development trajectories identified and recommendations for intervention measures to be taken under cohesion policy.

  3. Predator attack rate evolution in space: the role of ecology mediated by complex emergent spatial structure and self-shading.

    Science.gov (United States)

    Messinger, Susanna M; Ostling, Annette

    2013-11-01

    Predation interactions are an important element of ecological communities. Population spatial structure has been shown to influence predator evolution, resulting in the evolution of a reduced predator attack rate; however, the evolutionary role of traits governing predator and prey ecology is unknown. The evolutionary effect of spatial structure on a predator's attack rate has primarily been explored assuming a fixed metapopulation spatial structure, and understood in terms of group selection. But endogenously generated, emergent spatial structure is common in nature. Furthermore, the evolutionary influence of ecological traits may be mediated through the spatial self-structuring process. Drawing from theory on pathogens, the evolutionary effect of emergent spatial structure can be understood in terms of self-shading, where a voracious predator limits its long-term invasion potential by reducing local prey availability. Here we formalize the effects of self-shading for predators using spatial moment equations. Then, through simulations, we show that in a spatial context self-shading leads to relationships between predator-prey ecology and the predator's attack rate that are not expected in a non-spatial context. Some relationships are analogous to relationships already shown for host-pathogen interactions, but others represent new trait dimensions. Finally, since understanding the effects of ecology using existing self-shading theory requires simplifications of the emergent spatial structure that do not apply well here, we also develop metrics describing the complex spatial structure of the predator and prey populations to help us explain the evolutionary effect of predator and prey ecology in the context of self-shading. The identification of these metrics may provide a step towards expansion of the predictive domain of self-shading theory to more complex spatial dynamics. Copyright © 2013 Elsevier Inc. All rights reserved.

  4. Determining the specific microbial populations and their spatial distribution within the stromatolite ecosystem of Shark Bay.

    Science.gov (United States)

    Goh, Falicia; Allen, Michelle A; Leuko, Stefan; Kawaguchi, Tomohiro; Decho, Alan W; Burns, Brendan P; Neilan, Brett A

    2009-04-01

    The stromatolites at Shark Bay, Western Australia, are analogues of some of the oldest evidence of life on Earth. The aim of this study was to identify and spatially characterize the specific microbial communities associated with Shark Bay intertidal columnar stromatolites. Conventional culturing methods and construction of 16S rDNA clone libraries from community genomic DNA with both universal and specific PCR primers were employed. The estimated coverage, richness and diversity of stromatolite microbial populations were compared with earlier studies on these ecosystems. The estimated coverage for all clone libraries indicated that population coverage was comprehensive. Phylogenetic analyses of stromatolite and surrounding seawater sequences were performed in ARB with the Greengenes database of full-length non-chimaeric 16S rRNA genes. The communities identified exhibited extensive diversity. The most abundant sequences from the stromatolites were alpha- and gamma-proteobacteria (58%), whereas the cyanobacterial community was characterized by sequences related to the genera Euhalothece, Gloeocapsa, Gloeothece, Chroococcidiopsis, Dermocarpella, Acaryochloris, Geitlerinema and Schizothrix. All clones from the archaeal-specific clone libraries were related to the halophilic archaea; however, no archaeal sequence was identified from the surrounding seawater. Fluorescence in situ hybridization also revealed stromatolite surfaces to be dominated by unicellular cyanobacteria, in contrast to the sub-surface archaea and sulphate-reducing bacteria. This study is the first to compare the microbial composition of morphologically similar stromatolites over time and examine the spatial distribution of specific microorganismic groups in these intertidal structures and the surrounding seawater at Shark Bay. The results provide a platform for identifying the key microbial physiology groups and their potential roles in modern stromatolite morphogenesis and ecology.

  5. Labor Market Structure and Salary Determination among Professional Basketball Players.

    Science.gov (United States)

    Wallace, Michael

    1988-01-01

    The author investigates the labor market structure and determinants of salaries for professional basketball players. An expanded version of the resource perspective is used. A three-tiered model of labor market segmentation is revealed for professional basketball players, but other variables also are important in salary determination. (Author/CH)

  6. Denotational, Causal, and Operational Determinism in Event Structures

    NARCIS (Netherlands)

    Rensink, Arend; Kirchner, H.

    1996-01-01

    Determinism of labelled transition systems and trees is a concept of theoretical and practical importance. We study its generalisation to event structures. It turns out that the result depends on what characterising property of tree determinism one sets out to generalise. We present three distinct

  7. Denotational, Causal, and Operational Determinism in Event Structures

    NARCIS (Netherlands)

    Rensink, Arend

    Determinism is a theoretically and practically important concept in labelled transition systems and trees. We study its generalisation to event structures. It turns out that the result depends on what characterising property of tree determinism one sets out to generalise. We present three distinct

  8. SPATIAL DETERMINISM AND TERRITORIAL PUBLIC ACTION IN FRANCE: CHALLENGES AND EVOLUTIONS

    Directory of Open Access Journals (Sweden)

    Grégory BUSQUET

    2011-06-01

    Full Text Available The French policy called “politique de la ville” that was institutionalized in the 80s, aimed to manage social contemporary problems of low cost housing built by the state in the 50s and 60s at the peripheries of cities following grand schemes (“grands ensembles”. Based on the study of the actors of this policy since its beginnings and of its underlying ideologies, this article shows that these districts are managed at present following the same patterns of thinking as the ones that engendered them. Since the 60s, the criticism of these grand schemes of low cost housing carried on by slogans such as “living environment” and “urban self-management” determined an answer from public authorities. However, I argue that these responses used different terms but continued in fact on same track. An ideology of spatial determinism and an ideal of social mix span all French urban policies since the 50s, while the idea of urban participation appears and then fades away. These ideologies were and continue being inherent in understanding the relations between space and society.

  9. Field mapping measurements to determine spatial and field dependence of critical current density in YBCO tapes

    International Nuclear Information System (INIS)

    Leclerc, J.; Berger, K.; Douine, B.; Lévêque, J.

    2013-01-01

    Highlights: • A method for characterizing superconducting tapes from field mapping is presented. • A new and efficient field mapping apparatus has been setup. • This method allows the spatial characterization of superconducting tapes. • The critical current density is obtained as a function of the flux density. • This method has been experimentally tested on an YBCO tape. -- Abstract: In this paper a measurement method that allows the determination of the critical current density of superconducting tape from field mapping measurements is presented. This contact-free method allows obtaining characteristics of the superconductor as a function of the position and of the applied flux density. With some modifications, this technique can be used for reel-to-reel measurements. The determination of the critical current density is based on an inverse calculation. This involves calculating the current distribution in the tape from magnetic measurements. An YBaCuO tape has been characterized at 77 K. A defect in this superconductor has been identified. Various tests were carried out to check the efficiency of the method. The inverse calculation was tested theoretically and experimentally. Comparison with a transport current measurement was also performed

  10. Environmental determinants of the spatial distribution of Angiostrongylus vasorum, Crenosoma vulpis and Eucoleus aerophilus in Hungary.

    Science.gov (United States)

    Tolnai, Z; Széll, Z; Sréter, T

    2015-01-30

    Angiostrongylus vasorum, Crenosoma vulpis and Eucoleus aerophilus (syn. Capillaria aerophila) are the most important lungworm species infecting wild and domesticated canids in Europe. To investigate the spatial distribution of these parasites and the factors influencing their circulation in the fox populations, 937 red foxes (Vulpes vulpes) were tested for lungworm infection in Hungary. The prevalence of A. vasorum, C. vulpis and E. aerophilus infection was high (17.9, 24.6 and 61.7%). The distribution pattern of infection in foxes and the relationship of this pattern with landscape and climate was analyzed by geographic information system. Based on the analysis, the annual precipitation was the major determinant of the spatial distribution of A. vasorum and C. vulpis and E. aerophilus. Nevertheless, the mean annual temperature also influenced the distribution of A. vasorum and E. aerophilus. The positive relationship with annual precipitation and the negative relationship with mean annual temperature can be attributed to the sensitivity of larvae, eggs and intermediate hosts (snails and slugs) of lungworms for desiccation. Based on the highly clumped distribution of A. vasorum and C. vulpis, the indirect life cycle (larvae, slugs and snails) of these parasites seems to be particularly sensitive for environmental effects. The distribution of E. aerophilus was considerably less clumped indicating a lower sensitivity of the direct life cycle (eggs) of this parasite for environmental factors. Based on these results, lungworm infections in canids including dogs can be expected mainly in relatively wet and cool areas. Copyright © 2014 Elsevier B.V. All rights reserved.

  11. Environmental determinants of the spatial distribution of Trichinella britovi and Trichinella spiralis in Hungary.

    Science.gov (United States)

    Tolnai, Z; Széll, Z; Marucci, G; Pozio, E; Sréter, T

    2014-08-29

    Trichinella spiralis and Trichinella britovi are the two most common species of the genus Trichinella persisting in the European wildlife. To investigate the spatial distribution of these Trichinella spp. and the factors influencing their circulation in Hungary, 3304 red foxes (Vulpes vulpes) and 0.29 million wild boars (Sus scrofa) were tested for Trichinella sp. infection in Hungary from 2006 to 2013. Trichinella spp. larvae from 68 (2.06%) foxes and 44 (0.015%) wild boars were identified by a multiplex PCR as T. britovi or T. spiralis. The locality of origin of foxes and wild boars were recorded in a geographic information system database. There was no correlation between environmental parameters in the home range of foxes and wild boars and the T. spiralis larval counts, but there was a positive correlation between the boundary zone of Hungary and T. spiralis infection (Pdistribution of T. spiralis in the Hungarian wildlife is determined by the transborder transmission of the parasite from the surrounding endemic countries. Multiple regression analysis was performed with environmental parameter values and T. britovi larval counts. Based on the statistical analysis, non-agricultural areas (forests, scrubs, herbaceous vegetation and pastures) and the mean annual temperature (Pdeterminants of the spatial distribution of T. britovi in Hungary. The positive relationship with non-agricultural areas can be explained by the generalist feeding behaviour including scavenging of foxes in these areas. The negative relationship with the mean annual temperature can be attributed to the slower decomposition of wildlife carcasses favouring a longer survival of T. britovi larvae in the host carrion and to the increase of scavenging of foxes. Copyright © 2014 Elsevier B.V. All rights reserved.

  12. Application of spatial and non-spatial data analysis in determination of the factors that impact municipal solid waste generation rates in Turkey

    International Nuclear Information System (INIS)

    Keser, Saniye; Duzgun, Sebnem; Aksoy, Aysegul

    2012-01-01

    Highlights: ► Spatial autocorrelation exists in municipal solid waste generation rates for different provinces in Turkey. ► Traditional non-spatial regression models may not provide sufficient information for better solid waste management. ► Unemployment rate is a global variable that significantly impacts the waste generation rates in Turkey. ► Significances of global parameters may diminish at local scale for some provinces. ► GWR model can be used to create clusters of cities for solid waste management. - Abstract: In studies focusing on the factors that impact solid waste generation habits and rates, the potential spatial dependency in solid waste generation data is not considered in relating the waste generation rates to its determinants. In this study, spatial dependency is taken into account in determination of the significant socio-economic and climatic factors that may be of importance for the municipal solid waste (MSW) generation rates in different provinces of Turkey. Simultaneous spatial autoregression (SAR) and geographically weighted regression (GWR) models are used for the spatial data analyses. Similar to ordinary least squares regression (OLSR), regression coefficients are global in SAR model. In other words, the effect of a given independent variable on a dependent variable is valid for the whole country. Unlike OLSR or SAR, GWR reveals the local impact of a given factor (or independent variable) on the waste generation rates of different provinces. Results show that provinces within closer neighborhoods have similar MSW generation rates. On the other hand, this spatial autocorrelation is not very high for the exploratory variables considered in the study. OLSR and SAR models have similar regression coefficients. GWR is useful to indicate the local determinants of MSW generation rates. GWR model can be utilized to plan waste management activities at local scale including waste minimization, collection, treatment, and disposal. At global

  13. Low-Carbon Transportation Oriented Urban Spatial Structure: Theory, Model and Case Study

    Directory of Open Access Journals (Sweden)

    Yuyao Ye

    2017-12-01

    Full Text Available Optimising the spatial structure of cities to promote low-carbon travel is a primary goal of urban planning and construction innovation in the low-carbon era. There is a need for basic research on the structural characteristics that help to reduce motor traffic, thereby promoting energy conservation. We first review the existing literature on the influence of urban spatial structure on transport carbon dioxide emissions and summarise the influence mechanisms. We then present two low-carbon transportation oriented patterns of urban spatial structure including the traditional walking city and the modern transit metropolis, illustrated by case studies. Furthermore, we propose an improved model Green Transportation System Oriented Development (GTOD, which is an extension of traditional transit-oriented development (TOD and includes the additional features of a walking city and an emphasis on the integration of land use with a green transportation system, consisting of the public transportation and non-auto travel system. A compact urban form, effective mix of land use and appropriate scale of block are the basic structural features of a low-carbon transportation city. However, these features are only effective at promoting low-carbon transportation when integrated with the green traffic systems. Proper integration of the urban structural system with the green space system is also required. The optimal land use/transportation integration strategy is to divide traffic corridors with wedge-shaped green spaces and limit development along the transit corridors. This strategy forms the basis of the proposed urban structural model to promote low-carbon transportation and sustainable urban growth management.

  14. Spatial Dependence and Determinants of Dairy Farmers' Adoption of Best Management Practices for Water Protection in New Zealand

    Science.gov (United States)

    Yang, Wei; Sharp, Basil

    2017-04-01

    This paper analyses spatial dependence and determinants of the New Zealand dairy farmers' adoption of best management practices to protect water quality. A Bayesian spatial durbin probit model is used to survey data collected from farmers in the Waikato region of New Zealand. The results show that farmers located near each other exhibit similar choice behaviour, indicating the importance of farmer interactions in adoption decisions. The results also address that information acquisition is the most important determinant of farmers' adoption of best management practices. Financial problems are considered a significant barrier to adopting best management practices. Overall, the existence of distance decay effect and spatial dependence in farmers' adoption decisions highlights the importance of accounting for spatial effects in farmers' decision-making, which emerges as crucial to the formulation of sustainable agriculture policy.

  15. Integral membrane protein structure determination using pseudocontact shifts

    Energy Technology Data Exchange (ETDEWEB)

    Crick, Duncan J.; Wang, Jue X. [University of Cambridge, Department of Biochemistry (United Kingdom); Graham, Bim; Swarbrick, James D. [Monash University, Monash Institute of Pharmaceutical Sciences (Australia); Mott, Helen R.; Nietlispach, Daniel, E-mail: dn206@cam.ac.uk [University of Cambridge, Department of Biochemistry (United Kingdom)

    2015-04-15

    Obtaining enough experimental restraints can be a limiting factor in the NMR structure determination of larger proteins. This is particularly the case for large assemblies such as membrane proteins that have been solubilized in a membrane-mimicking environment. Whilst in such cases extensive deuteration strategies are regularly utilised with the aim to improve the spectral quality, these schemes often limit the number of NOEs obtainable, making complementary strategies highly beneficial for successful structure elucidation. Recently, lanthanide-induced pseudocontact shifts (PCSs) have been established as a structural tool for globular proteins. Here, we demonstrate that a PCS-based approach can be successfully applied for the structure determination of integral membrane proteins. Using the 7TM α-helical microbial receptor pSRII, we show that PCS-derived restraints from lanthanide binding tags attached to four different positions of the protein facilitate the backbone structure determination when combined with a limited set of NOEs. In contrast, the same set of NOEs fails to determine the correct 3D fold. The latter situation is frequently encountered in polytopical α-helical membrane proteins and a PCS approach is thus suitable even for this particularly challenging class of membrane proteins. The ease of measuring PCSs makes this an attractive route for structure determination of large membrane proteins in general.

  16. Structural determination of intact proteins using mass spectrometry

    Science.gov (United States)

    Kruppa, Gary [San Francisco, CA; Schoeniger, Joseph S [Oakland, CA; Young, Malin M [Livermore, CA

    2008-05-06

    The present invention relates to novel methods of determining the sequence and structure of proteins. Specifically, the present invention allows for the analysis of intact proteins within a mass spectrometer. Therefore, preparatory separations need not be performed prior to introducing a protein sample into the mass spectrometer. Also disclosed herein are new instrumental developments for enhancing the signal from the desired modified proteins, methods for producing controlled protein fragments in the mass spectrometer, eliminating complex microseparations, and protein preparatory chemical steps necessary for cross-linking based protein structure determination.Additionally, the preferred method of the present invention involves the determination of protein structures utilizing a top-down analysis of protein structures to search for covalent modifications. In the preferred method, intact proteins are ionized and fragmented within the mass spectrometer.

  17. Energy group structure determination using particle swarm optimization

    International Nuclear Information System (INIS)

    Yi, Ce; Sjoden, Glenn

    2013-01-01

    Highlights: ► Particle swarm optimization is applied to determine broad group structure. ► A graph representation of the broad group structure problem is introduced. ► The approach is tested on a fuel-pin model. - Abstract: Multi-group theory is widely applied for the energy domain discretization when solving the Linear Boltzmann Equation. To reduce the computational cost, fine group cross libraries are often down-sampled into broad group cross section libraries. Cross section data collapsing generally involves two steps: Firstly, the broad group structure has to be determined; secondly, a weighting scheme is used to evaluate the broad cross section library based on the fine group cross section data and the broad group structure. A common scheme is to average the fine group cross section weighted by the fine group flux. Cross section collapsing techniques have been intensively researched. However, most studies use a pre-determined group structure, open based on experience, to divide the neutron energy spectrum into thermal, epi-thermal, fast, etc. energy range. In this paper, a swarm intelligence algorithm, particle swarm optimization (PSO), is applied to optimize the broad group structure. A graph representation of the broad group structure determination problem is introduced. And the swarm intelligence algorithm is used to solve the graph model. The effectiveness of the approach is demonstrated using a fuel-pin model

  18. Research Update: Spatially resolved mapping of electronic structure on atomic level by multivariate statistical analysis

    International Nuclear Information System (INIS)

    Belianinov, Alex; Ganesh, Panchapakesan; Lin, Wenzhi; Jesse, Stephen; Pan, Minghu; Kalinin, Sergei V.; Sales, Brian C.; Sefat, Athena S.

    2014-01-01

    Atomic level spatial variability of electronic structure in Fe-based superconductor FeTe 0.55 Se 0.45 (T c = 15 K) is explored using current-imaging tunneling-spectroscopy. Multivariate statistical analysis of the data differentiates regions of dissimilar electronic behavior that can be identified with the segregation of chalcogen atoms, as well as boundaries between terminations and near neighbor interactions. Subsequent clustering analysis allows identification of the spatial localization of these dissimilar regions. Similar statistical analysis of modeled calculated density of states of chemically inhomogeneous FeTe 1−x Se x structures further confirms that the two types of chalcogens, i.e., Te and Se, can be identified by their electronic signature and differentiated by their local chemical environment. This approach allows detailed chemical discrimination of the scanning tunneling microscopy data including separation of atomic identities, proximity, and local configuration effects and can be universally applicable to chemically and electronically inhomogeneous surfaces

  19. The Spatial Release of Cognitive Load in Cocktail Party Is Determined by the Relative Levels of the Talkers.

    Science.gov (United States)

    Andéol, Guillaume; Suied, Clara; Scannella, Sébastien; Dehais, Frédéric

    2017-06-01

    In a multi-talker situation, spatial separation between talkers reduces cognitive processing load: this is the "spatial release of cognitive load". The present study investigated the role played by the relative levels of the talkers on this spatial release of cognitive load. During the experiment, participants had to report the speech emitted by a target talker in the presence of a concurrent masker talker. The spatial separation (0° and 120° angular distance in azimuth) and the relative levels of the talkers (adverse, intermediate, and favorable target-to-masker ratio) were manipulated. The cognitive load was assessed with a prefrontal functional near-infrared spectroscopy. Data from 14 young normal-hearing listeners revealed that the target-to-masker ratio had a direct impact on the spatial release of cognitive load. Spatial separation significantly reduced the prefrontal activity only for the intermediate target-to-masker ratio and had no effect on prefrontal activity for the favorable and the adverse target-to-masker ratios. Therefore, the relative levels of the talkers might be a key point to determine the spatial release of cognitive load and more specifically the prefrontal activity induced by spatial cues in multi-talker situations.

  20. Scanning moiré and spatial-offset phase-stepping for surface inspection of structures

    Science.gov (United States)

    Yoneyama, S.; Morimoto, Y.; Fujigaki, M.; Ikeda, Y.

    2005-06-01

    In order to develop a high-speed and accurate surface inspection system of structures such as tunnels, a new surface profile measurement method using linear array sensors is studied. The sinusoidal grating is projected on a structure surface. Then, the deformed grating is scanned by linear array sensors that move together with the grating projector. The phase of the grating is analyzed by a spatial offset phase-stepping method to perform accurate measurement. The surface profile measurements of the wall with bricks and the concrete surface of a structure are demonstrated using the proposed method. The change of geometry or fabric of structures and the defects on structure surfaces can be detected by the proposed method. It is expected that the surface profile inspection system of tunnels measuring from a running train can be constructed based on the proposed method.

  1. Chromosphere of K giant stars. Geometrical extent and spatial structure detection

    Science.gov (United States)

    Berio, P.; Merle, T.; Thévenin, F.; Bonneau, D.; Mourard, D.; Chesneau, O.; Delaa, O.; Ligi, R.; Nardetto, N.; Perraut, K.; Pichon, B.; Stee, P.; Tallon-Bosc, I.; Clausse, J. M.; Spang, A.; McAlister, H.; ten Brummelaar, T.; Sturmann, J.; Sturmann, L.; Turner, N.; Farrington, C.; Goldfinger, P. J.

    2011-11-01

    Context. Interferometers provide accurate diameter measurements of stars by analyzing both the continuum and the lines formed in photospheres and chromospheres. Tests of the geometrical extent of the chromospheres are therefore possible by comparing the estimated radius in the continuum of the photosphere and the estimated radii in chromospheric lines. Aims: We aim to constrain the geometrical extent of the chromosphere of non-binary K giant stars and detect any spatial structures in the chromosphere. Methods: We performed observations with the CHARA interferometer and the VEGA beam combiner at optical wavelengths. We observed seven non-binary K giant stars (β and η Cet, δ Crt, ρ Boo, β Oph, 109 Her, and ι Cep). We measured the ratio of the radii of the photosphere to the chromosphere using the interferometric measurements in the Hα and the Ca II infrared triplet line cores. For β Cet, spectro-interferometric observations are compared to a non-local thermal equilibrium (NLTE) semi-empirical model atmosphere including a chromosphere. The NLTE computations provide line intensities and contribution functions that indicate the relative locations where the line cores are formed and can constrain the size of the limb-darkened disk of the stars with chromospheres. We measured the angular diameter of seven K giant stars and deduced their fundamental parameters: effective temperatures, radii, luminosities, and masses. We determined the geometrical extent of the chromosphere for four giant stars (β and η Cet, δ Crt and ρ Boo). Results: The chromosphere extents obtained range between 16% to 47% of the stellar radius. The NLTE computations confirm that the Ca II/849 nm line core is deeper in the chromosphere of β Cet than either of the Ca II/854 nm and Ca II/866 nm line cores. We present a modified version of a semi-empirical model atmosphere derived by fitting the Ca II triplet line cores of this star. In four of our targets, we also detect the signature of a

  2. Contrasting spatial structures of Atlantic Multidecadal Oscillation between observations and slab ocean model simulations

    Science.gov (United States)

    Sun, Cheng; Li, Jianping; Kucharski, Fred; Xue, Jiaqing; Li, Xiang

    2018-04-01

    The spatial structure of Atlantic multidecadal oscillation (AMO) is analyzed and compared between the observations and simulations from slab ocean models (SOMs) and fully coupled models. The observed sea surface temperature (SST) pattern of AMO is characterized by a basin-wide monopole structure, and there is a significantly high degree of spatial coherence of decadal SST variations across the entire North Atlantic basin. The observed SST anomalies share a common decadal-scale signal, corresponding to the basin-wide average (i. e., the AMO). In contrast, the simulated AMO in SOMs (AMOs) exhibits a tripole-like structure, with the mid-latitude North Atlantic SST showing an inverse relationship with other parts of the basin, and the SOMs fail to reproduce the observed strong spatial coherence of decadal SST variations associated with the AMO. The observed spatial coherence of AMO SST anomalies is identified as a key feature that can be used to distinguish the AMO mechanism. The tripole-like SST pattern of AMOs in SOMs can be largely explained by the atmosphere-forced thermodynamics mechanism due to the surface heat flux changes associated with the North Atlantic Oscillation (NAO). The thermodynamic forcing of AMOs by the NAO gives rise to a simultaneous inverse NAO-AMOs relationship at both interannual and decadal timescales and a seasonal phase locking of the AMOs variability to the cold season. However, the NAO-forced thermodynamics mechanism cannot explain the observed NAO-AMO relationship and the seasonal phase locking of observed AMO variability to the warm season. At decadal timescales, a strong lagged relationship between NAO and AMO is observed, with the NAO leading by up to two decades, while the simultaneous correlation of NAO with AMO is weak. This lagged relationship and the spatial coherence of AMO can be well understood from the view point of ocean dynamics. A time-integrated NAO index, which reflects the variations in Atlantic meridional overturning

  3. Development of XAFS Into a Structure Determination Technique

    Science.gov (United States)

    Stern, E. A.

    After the detection of diffraction of x-rays by M. Laue in 1912, the technique was soon applied to structure determination by Bragg within a year. On the other hand, although the edge steps in X-Ray absorption were discovered even earlier by Barkla and both the near edge (XANES) and extended X-Ray fine structure (EXAFS) past the edge were detected by 1929, it still took over 40 years to realize the structure information contained in this X-Ray absorption fine structure (XAFS). To understand this delay a brief historical review of the development of the scientific ideas that transformed XAFS into the premiere technique for local structure determination is given. The development includes both advances in theoretical understanding and calculational capabilities, and in experimental facilities, especially synchrotron radiation sources. The present state of the XAFS technique and its capabilities are summarized.

  4. Alexa Fluor-labeled Fluorescent Cellulose Nanocrystals for Bioimaging Solid Cellulose in Spatially Structured Microenvironments

    Energy Technology Data Exchange (ETDEWEB)

    Grate, Jay W.; Mo, Kai-For; Shin, Yongsoon; Vasdekis, Andreas; Warner, Marvin G.; Kelly, Ryan T.; Orr, Galya; Hu, Dehong; Dehoff, Karl J.; Brockman, Fred J.; Wilkins, Michael J.

    2015-03-18

    Cellulose nanocrystal materials have been labeled with modern Alexa Fluor dyes in a process that first links the dye to a cyanuric chloride molecule. Subsequent reaction with cellulose nanocrystals provides dyed solid microcrystalline cellulose material that can be used for bioimaging and suitable for deposition in films and spatially structured microenvironments. It is demonstrated with single molecular fluorescence microscopy that these films are subject to hydrolysis by cellulose enzymes.

  5. New Constraints on Spatial Variations of the Fine Structure Constant from Clusters of Galaxies

    Directory of Open Access Journals (Sweden)

    Ivan De Martino

    2016-12-01

    Full Text Available We have constrained the spatial variation of the fine structure constant using multi-frequency measurements of the thermal Sunyaev-Zeldovich effect of 618 X-ray selected clusters. Although our results are not competitive with the ones from quasar absorption lines, we improved by a factor 10 and ∼2.5 previous results from Cosmic Microwave Background power spectrum and from galaxy clusters, respectively.

  6. Spatial Scales of Genetic Structure in Free-Standing and Strangler Figs (Ficus, Moraceae Inhabiting Neotropical Forests.

    Directory of Open Access Journals (Sweden)

    Katrin Heer

    Full Text Available Wind-borne pollinating wasps (Agaonidae can transport fig (Ficus sp., Moraceae pollen over enormous distances (> 100 km. Because of their extensive breeding areas, Neotropical figs are expected to exhibit weak patterns of genetic structure at local and regional scales. We evaluated genetic structure at the regional to continental scale (Panama, Costa Rica, and Peru for the free-standing fig species Ficus insipida. Genetic differentiation was detected only at distances > 300 km (Jost´s Dest = 0.68 ± 0.07 & FST = 0.30 ± 0.03 between Mesoamerican and Amazonian sites and evidence for phylogeographic structure (RST>>permuted RST was only significant in comparisons between Central and South America. Further, we assessed local scale spatial genetic structure (SGS, d ≤ 8 km in Panama and developed an agent-based model parameterized with data from F. insipida to estimate minimum pollination distances, which determine the contribution of pollen dispersal on SGS. The local scale data for F. insipida was compared to SGS data collected for an additional free-standing fig, F. yoponensis (subgenus Pharmacosycea, and two species of strangler figs, F. citrifolia and F. obtusifolia (subgenus Urostigma sampled in Panama. All four species displayed significant SGS (mean Sp = 0.014 ± 0.012. Model simulations indicated that most pollination events likely occur at distances > > 1 km, largely ruling out spatially limited pollen dispersal as the determinant of SGS in F. insipida and, by extension, the other fig species. Our results are consistent with the view that Ficus develops fine-scale SGS primarily as a result of localized seed dispersal and/or clumped seedling establishment despite extensive long-distance pollen dispersal. We discuss several ecological and life history factors that could have species- or subgenus-specific impacts on the genetic structure of Neotropical figs.

  7. Spatial resolution limit study of a CCD camera and scintillator based neutron imaging system according to MTF determination and analysis

    International Nuclear Information System (INIS)

    Kharfi, F.; Denden, O.; Bourenane, A.; Bitam, T.; Ali, A.

    2012-01-01

    Spatial resolution limit is a very important parameter of an imaging system that should be taken into consideration before examination of any object. The objectives of this work are the determination of a neutron imaging system's response in terms of spatial resolution. The proposed procedure is based on establishment of the Modulation Transfer Function (MTF). The imaging system being studied is based on a high sensitivity CCD neutron camera (2×10 −5 lx at f1.4). The neutron beam used is from the horizontal beam port (H.6) of the Algerian Es-Salam research reactor. Our contribution is on the MTF determination by proposing an accurate edge identification method and a line spread function undersampling problem-resolving procedure. These methods and procedure are integrated into a MatLab code. The methods, procedures and approaches proposed in this work are available for any other neutron imaging system and allow for judging the ability of a neutron imaging system to produce spatial (internal details) properties of any object under examination. - Highlights: ► Determination of spatial response of a neutron imaging system. ► Ability of a neutron imaging system to reproduce spatial properties of any object. ► Spatial resolution limits measurement using MTF with the slanted edge method. ► Accurate edge identification and line spread function sampling improvement. ► Development of a MatLab code to compute automatically the MTF.

  8. Spatial genetic structuring of baobab (Adansonia digitata, Malvaceae) in the traditional agroforestry systems of West Africa.

    Science.gov (United States)

    Kyndt, Tina; Assogbadjo, Achille E; Hardy, Olivier J; Glele Kakaï, Romain; Sinsin, Brice; Van Damme, Patrick; Gheysen, Godelieve

    2009-05-01

    This study evaluates the spatial genetic structure of baobab (Adansonia digitata) populations from West African agroforestry systems at different geographical scales using AFLP fingerprints. Eleven populations from four countries (Benin, Ghana, Burkina Faso, and Senegal) had comparable levels of genetic diversity, although the two populations in the extreme west (Senegal) had less diversity. Pairwise F(ST) ranged from 0.02 to 0.28 and increased with geographic distance, even at a regional scale. Gene pools detected by Bayesian clustering seem to be a byproduct of the isolation-by-distance pattern rather than representing actual discrete entities. The organization of genetic diversity appears to result essentially from spatially restricted gene flow, with some influences of human seed exchange. Despite the potential for relatively long-distance pollen and seed dispersal by bats within populations, statistically significant spatial genetic structuring within populations (SGS) was detected and gave a mean indirect estimate of neighborhood size of ca. 45. This study demonstrated that relatively high levels of genetic structuring are present in baobab at both large and within-population level, which was unexpected in regard to its dispersal by bats and the influence of human exchange of seeds. Implications of these results for the conservation of baobab populations are discussed.

  9. Characterizing the spatial structure of endangered species habitat using geostatistical analysis of IKONOS imagery

    Science.gov (United States)

    Wallace, C.S.A.; Marsh, S.E.

    2005-01-01

    Our study used geostatistics to extract measures that characterize the spatial structure of vegetated landscapes from satellite imagery for mapping endangered Sonoran pronghorn habitat. Fine spatial resolution IKONOS data provided information at the scale of individual trees or shrubs that permitted analysis of vegetation structure and pattern. We derived images of landscape structure by calculating local estimates of the nugget, sill, and range variogram parameters within 25 ?? 25-m image windows. These variogram parameters, which describe the spatial autocorrelation of the 1-m image pixels, are shown in previous studies to discriminate between different species-specific vegetation associations. We constructed two independent models of pronghorn landscape preference by coupling the derived measures with Sonoran pronghorn sighting data: a distribution-based model and a cluster-based model. The distribution-based model used the descriptive statistics for variogram measures at pronghorn sightings, whereas the cluster-based model used the distribution of pronghorn sightings within clusters of an unsupervised classification of derived images. Both models define similar landscapes, and validation results confirm they effectively predict the locations of an independent set of pronghorn sightings. Such information, although not a substitute for field-based knowledge of the landscape and associated ecological processes, can provide valuable reconnaissance information to guide natural resource management efforts. ?? 2005 Taylor & Francis Group Ltd.

  10. The impact of natural transformation on adaptation in spatially structured bacterial populations.

    Science.gov (United States)

    Moradigaravand, Danesh; Engelstädter, Jan

    2014-06-20

    Recent studies have demonstrated that natural transformation and the formation of highly structured populations in bacteria are interconnected. In spite of growing evidence about this connection, little is known about the dynamics of natural transformation in spatially structured bacterial populations. In this work, we model the interdependency between the dynamics of the bacterial gene pool and those of environmental DNA in space to dissect the effect of transformation on adaptation. Our model reveals that even with only a single locus under consideration, transformation with a free DNA fragment pool results in complex adaptation dynamics that do not emerge in previous models focusing only on the gene shuffling effect of transformation at multiple loci. We demonstrate how spatial restriction on population growth and DNA diffusion in the environment affect the impact of transformation on adaptation. We found that in structured bacterial populations intermediate DNA diffusion rates predominantly cause transformation to impede adaptation by spreading deleterious alleles in the population. Overall, our model highlights distinctive evolutionary consequences of bacterial transformation in spatially restricted compared to planktonic bacterial populations.

  11. Spatial extent of analysis influences observed patterns of population genetic structure in a widespread darter species (Percidae)

    Science.gov (United States)

    Argentina, Jane E.; Angermeier, Paul L.; Hallerman, Eric M.; Welsh, Stuart A.

    2018-01-01

    Connectivity among stream fish populations allows for exchange of genetic material and helps maintain genetic diversity, adaptive potential and population stability over time. Changes in species demographics and population connectivity have the potential to permanently alter the genetic patterns of stream fish, although these changes through space and time are variable and understudied in small‐bodied freshwater fish.As a spatially widespread, common species of benthic freshwater fish, the variegate darter (Etheostoma variatum) is a model species for documenting how patterns of genetic structure and diversity respond to increasing isolation due to large dams and how scale of study may shape our understanding of these patterns. We sampled variegate darters from 34 sites across their range in the North American Ohio River basin and examined how patterns of genetic structure and diversity within and between populations responded to historical population changes and dams within and between populations.Spatial scale and configuration of genetic structure varied across the eight identified populations, from tributaries within a watershed, to a single watershed, to multiple watersheds that encompass Ohio River mainstem habitats. This multiwatershed pattern of population structuring suggests genetic dispersal across large distances was and may continue to be common, although some populations remain isolated despite no apparent structural dispersal barriers. Populations with low effective population sizes and evidence of past population bottlenecks showed low allelic richness, but diversity patterns were not related to watershed size, a surrogate for habitat availability. Pairwise genetic differentiation (FST) increased with fluvial distance and was related to both historic and contemporary processes. Genetic diversity changes were influenced by underlying population size and stability, and while instream barriers were not strong determinants of genetic structuring or

  12. Spatial genetic structure across a hybrid zone between European rabbit subspecies

    Directory of Open Access Journals (Sweden)

    Fernando Alda

    2014-09-01

    Full Text Available The Iberian Peninsula is the only region in the world where the two existing subspecies of the European rabbit (Oryctolagus cuniculus naturally occur and hybridize. In this study we explore the relative roles of historical and contemporary processes in shaping the spatial genetic structure of the rabbit across its native distribution range, and how they differently affect each subspecies and the hybrid zone. For that purpose we obtained multilocus genotypes and mitochondrial DNA data from 771 rabbits across most of the distribution range of the European rabbit in Spain. Based on the nuclear markers we observed a hierarchical genetic structure firstly comprised by two genetic groups, largely congruent with the mitochondrial lineages and subspecies distributions (O. c. algirus and O. c. cuniculus, which were subsequently subdivided into seven genetic groups. Geographic distance alone emerged as an important factor explaining genetic differentiation across the whole range, without the need to invoke for the effect for geographical barriers. Additionally, the significantly positive spatial correlation up to a distance of only 100 km supported the idea that differentiation at a local level is of greater importance when considering the species overall genetic structure. When looking at the subspecies, northern populations of O. c. cuniculus showed more spatial genetic structure and differentiation than O. c. algirus. This could be due to local geographic barriers, limited resources, soil type and/or social behavior limiting dispersal. The hybrid zone showed similar genetic structure to the southern populations but a larger introgression from the northern lineage genome. These differences have been attributed to selection against the hybrids rather than to behavioral differences between subspecies. Ultimately, the genetic structure of the rabbit in its native distribution range is the result of an ensemble of factors, from geographical and ecological

  13. Regulation of the demographic structure in isomorphic biphasic life cycles at the spatial fine scale.

    Directory of Open Access Journals (Sweden)

    Vasco Manuel Nobre de Carvalho da Silva Vieira

    Full Text Available Isomorphic biphasic algal life cycles often occur in the environment at ploidy abundance ratios (Haploid:Diploid different from 1. Its spatial variability occurs within populations related to intertidal height and hydrodynamic stress, possibly reflecting the niche partitioning driven by their diverging adaptation to the environment argued necessary for their prevalence (evolutionary stability. Demographic models based in matrix algebra were developed to investigate which vital rates may efficiently generate an H:D variability at a fine spatial resolution. It was also taken into account time variation and type of life strategy. Ploidy dissimilarities in fecundity rates set an H:D spatial structure miss-fitting the ploidy fitness ratio. The same happened with ploidy dissimilarities in ramet growth whenever reproductive output dominated the population demography. Only through ploidy dissimilarities in looping rates (stasis, breakage and clonal growth did the life cycle respond to a spatially heterogeneous environment efficiently creating a niche partition. Marginal locations were more sensitive than central locations. Related results have been obtained experimentally and numerically for widely different life cycles from the plant and animal kingdoms. Spore dispersal smoothed the effects of ploidy dissimilarities in fertility and enhanced the effects of ploidy dissimilarities looping rates. Ploidy dissimilarities in spore dispersal could also create the necessary niche partition, both over the space and time dimensions, even in spatial homogeneous environments and without the need for conditional differentiation of the ramets. Fine scale spatial variability may be the key for the prevalence of isomorphic biphasic life cycles, which has been neglected so far.

  14. Capital Structure Determinants of Small and Medium Enterprises in Croatia

    Directory of Open Access Journals (Sweden)

    Nataša Šarlija

    2016-09-01

    Full Text Available Most of the research about capital structure is focused towards two theories: trade off theory (TOT and pecking order theory (POT. The idea is to explore which theory works better in certain conditions and identify the key determinants that affect the capital structure of the company. However, in different countries different determinants with opposite relation to the leverage are found to be significant. Besides, most of the previous researches are oriented on listed companies. The aim of this paper is to analyse the capital structure of small and medium enterprises in Croatia through the analysis of the fundamental determinants of the capital structure. The research was conducted on a data sample of 500 SMEs in Croatia in the period of 2005–2011. On the unbalanced panel data set a linear regression is applied. Influence of determinants on leverage is estimated by a static panel model with random effect and with fixed effect estimation. Four capital structure determinants are analysed: growth, size, profitability and tangible assets. The results of this research support the pecking order theory confirming that SMEs in Croatia are primarily financed frominternally generated funds that affect profitability, growth, tangible assets and enterprise size.

  15. Multilevel Spatial Structure Impacts on the Pollination Services of Comarum palustre (Rosaceae)

    Science.gov (United States)

    Somme, Laurent; Mayer, Carolin; Jacquemart, Anne-Laure

    2014-01-01

    Habitat destruction and fragmentation accelerate pollinator decline, consequently disrupting ecosystem processes such as pollination. To date, the impacts of multilevel spatial structure on pollination services have rarely been addressed. We focused on the effects of population spatial structure on the pollination services of Comarum palustre at three levels (i.e. within-population, between-populations and landscape). For three years, we investigated 14 Belgian populations, which differed in their within-population flower density, population surface, closure (i.e. proportion of the population edge that consisted of woody elements) and isolation (i.e. percentage of woody area cover within a 500 m radius from the population centre). We tested whether these spatial characteristics impact on pollinator abundance and visitation rate and thus, reproductive success of C. palustre. Insects were observed in 15 randomly-chosen plots in each population. We tested for pollen limitation with supplemental hand-cross pollination. Bumble bees and solitary bees were the major pollinators through all populations. Within populations, plots with high flower densities attracted high numbers of bumble bees and other insects. High bumble bee and solitary bee abundance was observed in populations presenting high proportions of woody edges and in populations within landscapes presenting high proportions of woody areas. Seed set resulting from open pollination varied with bumble bee and solitary bee visitation rate, leading to increased pollen limitation when pollinators were scarce. Since the reproductive success depended on the visitation rate of the main pollinators, which depended on multilevel spatial structure, wetland management plans should pay special attention to favour a mosaic of biotopes, including nesting sites and food resources for insects. This study particularly supports the relevance of a mix wetlands and woody habitats to bees. PMID:24915450

  16. Multilevel spatial structure impacts on the pollination services of Comarum palustre (Rosaceae).

    Science.gov (United States)

    Somme, Laurent; Mayer, Carolin; Jacquemart, Anne-Laure

    2014-01-01

    Habitat destruction and fragmentation accelerate pollinator decline, consequently disrupting ecosystem processes such as pollination. To date, the impacts of multilevel spatial structure on pollination services have rarely been addressed. We focused on the effects of population spatial structure on the pollination services of Comarum palustre at three levels (i.e. within-population, between-populations and landscape). For three years, we investigated 14 Belgian populations, which differed in their within-population flower density, population surface, closure (i.e. proportion of the population edge that consisted of woody elements) and isolation (i.e. percentage of woody area cover within a 500 m radius from the population centre). We tested whether these spatial characteristics impact on pollinator abundance and visitation rate and thus, reproductive success of C. palustre. Insects were observed in 15 randomly-chosen plots in each population. We tested for pollen limitation with supplemental hand-cross pollination. Bumble bees and solitary bees were the major pollinators through all populations. Within populations, plots with high flower densities attracted high numbers of bumble bees and other insects. High bumble bee and solitary bee abundance was observed in populations presenting high proportions of woody edges and in populations within landscapes presenting high proportions of woody areas. Seed set resulting from open pollination varied with bumble bee and solitary bee visitation rate, leading to increased pollen limitation when pollinators were scarce. Since the reproductive success depended on the visitation rate of the main pollinators, which depended on multilevel spatial structure, wetland management plans should pay special attention to favour a mosaic of biotopes, including nesting sites and food resources for insects. This study particularly supports the relevance of a mix wetlands and woody habitats to bees.

  17. Multilevel spatial structure impacts on the pollination services of Comarum palustre (Rosaceae.

    Directory of Open Access Journals (Sweden)

    Laurent Somme

    Full Text Available Habitat destruction and fragmentation accelerate pollinator decline, consequently disrupting ecosystem processes such as pollination. To date, the impacts of multilevel spatial structure on pollination services have rarely been addressed. We focused on the effects of population spatial structure on the pollination services of Comarum palustre at three levels (i.e. within-population, between-populations and landscape. For three years, we investigated 14 Belgian populations, which differed in their within-population flower density, population surface, closure (i.e. proportion of the population edge that consisted of woody elements and isolation (i.e. percentage of woody area cover within a 500 m radius from the population centre. We tested whether these spatial characteristics impact on pollinator abundance and visitation rate and thus, reproductive success of C. palustre. Insects were observed in 15 randomly-chosen plots in each population. We tested for pollen limitation with supplemental hand-cross pollination. Bumble bees and solitary bees were the major pollinators through all populations. Within populations, plots with high flower densities attracted high numbers of bumble bees and other insects. High bumble bee and solitary bee abundance was observed in populations presenting high proportions of woody edges and in populations within landscapes presenting high proportions of woody areas. Seed set resulting from open pollination varied with bumble bee and solitary bee visitation rate, leading to increased pollen limitation when pollinators were scarce. Since the reproductive success depended on the visitation rate of the main pollinators, which depended on multilevel spatial structure, wetland management plans should pay special attention to favour a mosaic of biotopes, including nesting sites and food resources for insects. This study particularly supports the relevance of a mix wetlands and woody habitats to bees.

  18. The spatial structure of magnetospheric plasma disturbance estimated by using magnetic data obtained by SWARM satellites.

    Science.gov (United States)

    Yokoyama, Y.; Iyemori, T.; Aoyama, T.

    2017-12-01

    Field-aligned currents with various spatial scales flow into and out from high-latitude ionosphere. The magnetic fluctuations observed by LEO satellites along their orbits having period longer than a few seconds can be regarded as the manifestations of spatial structure of field aligned currents.This has been confirmed by using the initial orbital characteristics of 3 SWARM-satellites. From spectral analysis, we evaluated the spectral indices of these magnetic fluctuations and investigated their dependence on regions, such as magnetic latitude and MLT and so on. We found that the spectral indices take quite different values between the regions lower than the equatorward boundary of the auroral oval (around 63 degrees' in magnetic latitude) and the regions higher than that. On the other hands, we could not find the clear MLT dependence. In general, the FACs are believed to be generated in the magnetiospheric plasma sheet and boundary layer, and they flow along the field lines conserving their currents.The theory of FAC generation [e.g., Hasegawa and Sato ,1978] indicates that the FACs are strongly connected with magnetospheric plasma disturbances. Although the spectral indices above are these of spatial structures of the FACs over the ionosphere, by using the theoretical equation of FAC generation, we evaluate the spectral indices of magnetospheric plasma disturbance in FAC's generation regions. Furthermore, by projecting the area of fluctuations on the equatorial plane of magnetosphere (i.e. plasma sheet), we can estimate the spatial structure of magnetospheric plasma disturbance. In this presentation, we focus on the characteristics of disturbance in midnight region and discuss the relations to the substorm.

  19. Reconstruction of the spatial dependence of dielectric and geometrical properties of adhesively bonded structures

    International Nuclear Information System (INIS)

    Mackay, C; Hayward, D; Mulholland, A J; McKee, S; Pethrick, R A

    2005-01-01

    An inverse problem motivated by the nondestructive testing of adhesively bonded structures used in the aircraft industry is studied. Using transmission line theory, a model is developed which, when supplied with electrical and geometrical parameters, accurately predicts the reflection coefficient associated with such structures. Particular attention is paid to modelling the connection between the structures and the equipment used to measure the reflection coefficient. The inverse problem is then studied and an optimization approach employed to recover these electrical and geometrical parameters from experimentally obtained data. In particular the approach focuses on the recovery of spatially varying geometrical parameters as this is paramount to the successful reconstruction of electrical parameters. Reconstructions of structure geometry using this method are found to be in close agreement with experimental observations

  20. Genetic structuring of northern myotis (Myotis septentrionalis) at multiple spatial scales

    Science.gov (United States)

    Johnson, Joshua B.; Roberts, James H.; King, Timothy L.; Edwards, John W.; Ford, W. Mark; Ray, David A.

    2014-01-01

    Although groups of bats may be genetically distinguishable at large spatial scales, the effects of forest disturbances, particularly permanent land use conversions on fine-scale population structure and gene flow of summer aggregations of philopatric bat species are less clear. We genotyped and analyzed variation at 10 nuclear DNA microsatellite markers in 182 individuals of the forest-dwelling northern myotis (Myotis septentrionalis) at multiple spatial scales, from within first-order watersheds scaling up to larger regional areas in West Virginia and New York. Our results indicate that groups of northern myotis were genetically indistinguishable at any spatial scale we considered, and the collective population maintained high genetic diversity. It is likely that the ability to migrate, exploit small forest patches, and use networks of mating sites located throughout the Appalachian Mountains, Interior Highlands, and elsewhere in the hibernation range have allowed northern myotis to maintain high genetic diversity and gene flow regardless of forest disturbances at local and regional spatial scales. A consequence of maintaining high gene flow might be the potential to minimize genetic founder effects following population declines caused currently by the enzootic White-nose Syndrome.

  1. Determination of the spatial characteristics of an RF electrodeless discharge by the method of emission tomography

    International Nuclear Information System (INIS)

    Denisova, N. V.; Revalde, G.; Skudra, A.

    2006-01-01

    The spatial distribution of the density of mercury atoms in the 7 3 S state in a spherical RF electrode-less gas-discharge lamp is reconstructed by the method of emission tomography. The local values of the corresponding emission coefficients, which are proportional to the density of mercury atoms in the 7 3 S state, are determined from integral (over the plasma volume) measurements of the lamp radiation at a wavelength of 546.1 nm with the help of an algorithm based on the maximum entropy method. The results obtained show that, for all of the operating modes under study, the profile of the density of mercury atoms in the 7 3 S state has a minimum in the center of the lamp and a maximum near its wall. At a generator current of 100 mA and cold-spot temperature of 41 deg. C, the density of mercury atoms in the 7 3 S state is observed to drop substantially both in the center of the lamp and near its wall, the density in the center being reduced to almost zero. An explanation of this phenomenon is proposed

  2. Spatial Model for Determining the Optimum Placement of Logistics Centers in a Predefined Economic Area

    Directory of Open Access Journals (Sweden)

    Ramona Iulia Țarțavulea (Dieaconescu

    2016-08-01

    Full Text Available The process of globalization has stimulated the demand for logistics services at a level of speed and increased efficiency, which involves using of techniques, tools, technologies and modern models in supply chain management. The aim of this research paper is to present a model that can be used in order to achieve an optimized supply chain, associated with minimum transportation costs. The utilization of spatial modeling for determining the optimal locations for logistics centers in a predefined economic area is proposd in this paper. The principal methods used to design the model are mathematic optimization and linear programming. The output data of the model are the precise placement of one up to ten logistics centers, in terms of minimum operational costs for delivery from the optimum locations to consumer points. The results of the research indicate that by using the proposed model, an efficient supply chain that is consistent with optimization of transport can be designed, in order to streamline the delivery process and thus reduce operational costs

  3. Spatial distribution of tuberculosis in Manaus and its social determinants, 2008-2013.

    Science.gov (United States)

    de Castro, D B; Sadahiro, M; Pinto, R C; de Albuquerque, B C; Braga, J U

    2018-02-01

    Brazil ranks eighteenth worldwide in annual numbers of new tuberculosis (TB) cases. The municipality of Manaus, Amazonas State, has the highest incidence of TB in Brazil. To evaluate the quality of TB epidemiological surveillance, and to describe the spatial distribution pattern of TB incidence in Manaus and its social determinants. An ecological study was performed based on secondary data from TB epidemiological surveillance reports. An index was developed to classify neighborhoods in terms of the quality of surveillance and suspected underreporting. Based on data from neighborhoods with better surveillance performance, we observed that the average number of residents per room, the unemployment rate and the proportion of households connected to a sewage system were significant predictors of TB incidence. Seven neighborhoods in the south and west of the city had clusters of high TB transmission. Our results suggest that the association between TB and social vulnerability is obscured by the poor quality of TB surveillance data. We identified priority areas that require immediate TB control interventions and those where local surveillance efforts should be improved, and generated information useful for formulating more effective actions.

  4. Spatial structure of the meroplankton community along a Patagonian fjord - The role of changing freshwater inputs

    Science.gov (United States)

    Meerhoff, Erika; Tapia, Fabián J.; Castro, Leonardo R.

    2014-12-01

    Freshwater inputs are major drivers of circulation, hydrographic structure, and productivity patterns along estuarine systems. We assessed the degree to which meroplankton community structure in the Baker/Martinez fjord complex (Chilean Patagonia, 47.5°S) responds to spatial and temporal changes in hydrographic conditions driven by seasonal changes in Baker river outflow. Zooplankton and hydrographic measurements were conducted along the fjord in early spring (October) and late summer (February), when river outflow was minimal and maximal, respectively. Major meroplankton groups found on these surveys were larval barnacles, crabs, bivalves and gastropods. There was a clear change in community structure between October and February, explained by a switch in the numerically dominant group from barnacle to bivalve larvae. This change in community structure was related to changes in hydrographic structure along the fjord, which are mainly associated with seasonal changes in the Baker river outflow. A variance partition analysis showed no significant spatial trend that could account for the variation in meroplankton along the Martinez channel, whereas temporal variability and environmental variables accounted for 36.6% and 27.6% of the variance, respectively. When comparing meroplankton among the Baker and Martinez channels in October, changes in environmental variables explained 44.9% of total variance, whereas spatial variability accounted for 23.5%. Early and late-stage barnacle larvae (i.e. nauplii and cyprids) were more abundant in water with lower temperature, and higher dissolved oxygen and chlorophyll-a concentration, whereas bivalve larvae were more strongly associated to warmer waters. The seasonal shift in numerical dominance, from barnacle larvae in early spring to bivalve larvae in late summer, suggests that reproduction of these groups is triggered by substantially different sets of conditions, both in terms of hydrography and food availability. The

  5. In cellulo structure determination of a novel cypovirus polyhedrin

    International Nuclear Information System (INIS)

    Axford, Danny; Ji, Xiaoyun; Stuart, David I.; Sutton, Geoff

    2014-01-01

    The crystal structure of a previously unsolved type of cypovirus polyhedrin has been determined from data collected directly from frozen live insect cells. This work demonstrates that with the use of a microfocus synchrotron beam the structure of a novel viral polyhedrin could be successfully determined from microcrystals within cells, removing the preparatory step of sample isolation and maintaining a favourable biological environment. The data obtained are of high quality, comparable to that obtained from isolated crystals, and enabled a facile structure determination. A small but significant difference is observed between the unit-cell parameters and the mosaic spread of in cellulo and isolated crystals, suggesting that even these robust crystals are adversely affected by removal from the cell

  6. Nucleic acid helix structure determination from NMR proton chemical shifts

    Energy Technology Data Exchange (ETDEWEB)

    Werf, Ramon M. van der; Tessari, Marco; Wijmenga, Sybren S., E-mail: S.Wijmenga@science.ru.nl [Radboud University Nijmegen, Department of Biophysical Chemistry, Institute of Molecules and Materials (Netherlands)

    2013-06-15

    We present a method for de novo derivation of the three-dimensional helix structure of nucleic acids using non-exchangeable proton chemical shifts as sole source of experimental restraints. The method is called chemical shift de novo structure derivation protocol employing singular value decomposition (CHEOPS) and uses iterative singular value decomposition to optimize the structure in helix parameter space. The correct performance of CHEOPS and its range of application are established via an extensive set of structure derivations using either simulated or experimental chemical shifts as input. The simulated input data are used to assess in a defined manner the effect of errors or limitations in the input data on the derived structures. We find that the RNA helix parameters can be determined with high accuracy. We finally demonstrate via three deposited RNA structures that experimental proton chemical shifts suffice to derive RNA helix structures with high precision and accuracy. CHEOPS provides, subject to further development, new directions for high-resolution NMR structure determination of nucleic acids.

  7. Determining airborne concentrations of spatial repellent chemicals in mosquito behavior assay systems.

    Directory of Open Access Journals (Sweden)

    Nicholas J Martin

    Full Text Available BACKGROUND: Mosquito behavior assays have been used to evaluate the efficacy of vector control interventions to include spatial repellents (SR. Current analytical methods are not optimized to determine short duration concentrations of SR active ingredients (AI in air spaces during entomological evaluations. The aim of this study was to expand on our previous research to further validate a novel air sampling method to detect and quantitate airborne concentrations of a SR under laboratory and field conditions. METHODOLOGY/PRINCIPAL FINDINGS: A thermal desorption (TD gas chromatography-mass spectrometry (GC-MS method was used to determine the amount of dichlorodiphenyltrichloroethane (DDT in samples of air. During laboratory experiments, 1 L volumes of air were collected over 10 min intervals from a three-chamber mosquito behavior assay system. Significantly higher levels of airborne DDT were measured in the chamber containing textiles treated with DDT compared to chambers free of AI. In the field, 57 samples of air were collected from experimental huts with and without DDT for onsite analysis. Airborne DDT was detected in samples collected from treated huts. The mean DDT air concentrations in these two huts over a period of four days with variable ambient temperature were 0.74 µg/m(3 (n = 17; SD = 0.45 and 1.42 µg/m(3 (n = 30; SD = 0.96. CONCLUSIONS/SIGNIFICANCE: The results from laboratory experiments confirmed that significantly different DDT exposure conditions existed in the three-chamber system establishing a chemical gradient to evaluate mosquito deterrency. The TD GC-MS method addresses a need to measure short-term (<1 h SR concentrations in small volume (<100 L samples of air and should be considered for standard evaluation of airborne AI levels in mosquito behavior assay systems. Future studies include the use of TD GC-MS to measure other semi-volatile vector control compounds.

  8. Determinants of Capital Structure in Non-Financial Companies

    OpenAIRE

    Kühnhausen, Fabian; Stieber, Harald W.

    2014-01-01

    In this paper, we evaluate firm-, industry- and country-specific factors determining a firm's capital structure. The empirical validity of several capital structure theories has been ambiguous so far. We shed light on the main drivers of leverage and depict differences in industry and country characteristics. Using a short panel data set with a large cross-section, we are able to show that firm size, industry leverage, industry growth and tax shield positively affect leverage ratios, while pr...

  9. A study on determinants of capital structure in India

    Directory of Open Access Journals (Sweden)

    Anshu Handoo

    2014-09-01

    Full Text Available The paper identifies the most important determinants of capital structure of 870 listed Indian firms comprising both private sector companies and government companies for the period 2001–2010. Ten independent variables and three dependent variables have been tested using regression analysis. It has been concluded that factors such as profitability, growth, asset tangibility, size, cost of debt, tax rate, and debt serving capacity have significant impact on the leverage structure chosen by firms in the Indian context.

  10. Sulfated oligosaccharide structures, as determined by NMR techniques

    International Nuclear Information System (INIS)

    Noseda, M.D.; Duarte, M.E.R.; Tischer, C.A.; Gorin, P.A.J.; Cerezo, A.S.

    1997-01-01

    Carrageenans are sulfated polysaccharides, produced by red seaweeds (Rhodophyta), that have important biological and physico-chemical properties. Using partial autohydrolysis, we obtained sulfated oligosaccharides from a λ-carrageenan (Noseda and Cerezo, 1993). These oligosaccharides are valuable not only for the study of the structures of the parent carrageenans but also for their possible biological activities. In this work we determined the chemical structure of one of the sulfated oligosaccharides using 1D and 2D NMR techniques. (author)

  11. Determinants of Market Structure and the Airline Industry

    Science.gov (United States)

    Raduchel, W.

    1972-01-01

    The general economic determinants of market structure are outlined with special reference to the airline industry. Included are the following facets: absolute size of firms; distributions of firms by size; concentration; entry barriers; product and service differentiation; diversification; degrees of competition; vertical integration; market boundaries; and economies of scale. Also examined are the static and dynamic properties of market structure in terms of mergers, government policies, and economic growth conditions.

  12. Generative probabilistic models extend the scope of inferential structure determination

    DEFF Research Database (Denmark)

    Olsson, Simon; Boomsma, Wouter; Frellsen, Jes

    2011-01-01

    demonstrate that the use of generative probabilistic models instead of physical forcefields in the Bayesian formalism is not only conceptually attractive, but also improves precision and efficiency. Our results open new vistas for the use of sophisticated probabilistic models of biomolecular structure......Conventional methods for protein structure determination from NMR data rely on the ad hoc combination of physical forcefields and experimental data, along with heuristic determination of free parameters such as weight of experimental data relative to a physical forcefield. Recently, a theoretically...

  13. Rotational characterization of methyl methacrylate: Internal dynamics and structure determination

    Science.gov (United States)

    Herbers, Sven; Wachsmuth, Dennis; Obenchain, Daniel A.; Grabow, Jens-Uwe

    2018-01-01

    Rotational constants, Watson's S centrifugal distortion coefficients, and internal rotation parameters of the two most stable conformers of methyl methacrylate were retrieved from the microwave spectrum. Splittings of rotational energy levels were caused by two non equivalent methyl tops. Constraining the centrifugal distortion coefficients and internal rotation parameters to the values of the main isotopologues, the rotational constants of all single substituted 13C and 18O isotopologues were determined. From these rotational constants the substitution structures and semi-empirical zero point structures of both conformers were precisely determined.

  14. Organizational Structure as a Determinant of Job Burnout.

    Science.gov (United States)

    Bilal, Atif; Ahmed, Hafiz Mushtaq

    2017-03-01

    This exploratory study determined the impact of organizational structure, particularly participation in decision making, instrumental communication, formalization, integration, and promotional opportunity, on burnout among Pakistani pediatric nurses. Data were collected from pediatric nurses working for Punjab's largest state-run hospital. The findings revealed that participation in decision making, instrumental communication, and promotional opportunity prevented burnout. Formalization contributed to burnout but integration was not related to burnout. Quite interestingly, except for supervisory status, most control variables for this study were not significantly related to emotional burnout. Hence, the hypothesis that organizational structure is a determinant of job burnout was accepted.

  15. Preservation of three-dimensional spatial structure in the gut microbiome.

    Directory of Open Access Journals (Sweden)

    Yuko Hasegawa

    Full Text Available Preservation of three-dimensional structure in the gut is necessary in order to analyze the spatial organization of the gut microbiota and gut luminal contents. In this study, we evaluated preparation methods for mouse gut with the goal of preserving micron-scale spatial structure while performing fluorescence imaging assays. Our evaluation of embedding methods showed that commonly used media such as Tissue-Tek Optimal Cutting Temperature (OCT compound, paraffin, and polyester waxes resulted in redistribution of luminal contents. By contrast, a hydrophilic methacrylate resin, Technovit H8100, preserved three-dimensional organization. Our mouse intestinal preparation protocol optimized using the Technovit H8100 embedding method was compatible with microbial fluorescence in situ hybridization (FISH and other labeling techniques, including immunostaining and staining with both wheat germ agglutinin (WGA and 4', 6-diamidino-2-phenylindole (DAPI. Mucus could be visualized whether the sample was fixed with paraformaldehyde (PFA or with Carnoy's fixative. The protocol optimized in this study enabled simultaneous visualization of micron-scale spatial patterns formed by microbial cells in the mouse intestines along with biogeographical landmarks such as host-derived mucus and food particles.

  16. Doppler HF Radar Application for the Study of Spatial Structure of Currents in the Black Sea

    Directory of Open Access Journals (Sweden)

    V.V. Gorbatskiy

    2017-06-01

    Full Text Available The results of the surface current spatial structure observations performed by SeaSonde Doppler HF radar (operating frequency is 25 MHz in the Black Sea region adjacent to the city of Gelendzhik are represented. The observations imply a special technique consisting in successive measurements at two selected points of the coastline. Initially, the measurements are carried out in the first of two selected coastal points during two hours. Then the radar system is transferred to the second point on the coast where the procedure is repeated. At that the velocity field is assumed to remain unchanged during the total measurement period (including the time of the radar displacement from both points. The measurement results are shown in a form of a spatial map of the current velocity vectors in the research region (with 20 × 20 km dimensions. Some features of the current spatial and temporal variability in the coastal waters are revealed. Particularly, the eddy-like formations (the diameter is a few kilometers which rapidly move and collapse. Since similar eddies are detected using the contact measurement methods, complex and variable structure of the surface currents measured by a radar does not seem to be an artifact. Nevertheless, reliability of the data resulted from the radar measurements of the surface current velocity field should be verified in future by comparing it with the results of the quasi-synchronous velocity field measurements performed by stationary, drifting and towed velocity meters.

  17. Deployment of spatial attention to a structural framework: exogenous (alerting) and endogenous (goal-directed) factors.

    Science.gov (United States)

    Jefferies, Lisa N; Di Lollo, Vincent

    2017-10-01

    The main question examined in the present work was whether spatial attention can be deployed to an appropriate structural framework not only endogenously when the framework is displayed continuously, as in previous work, but also exogenously, when it is displayed transiently 100 ms before the target. The results of five experiments answered that question in the negative. We found that the onset transient triggered by a brief presentation of the structural framework did enhance the response to the upcoming target. That enhancement, however, was due not to the framework itself but to the alerting effect produced by its sudden onset, witness the finding that the same enhancement was produced by an onset transient triggered by a featureless stimulus (i.e., by a brief dimming of the entire screen, in the absence of a structural framework). We conclude that spatial attention can be deployed to the region demarcated by a structural framework when it is deployed endogenously but not when it is deployed exogenously. A theoretical account of the results is proposed in terms of the temporal dynamics of the locus cœruleus/norepinephrine neuromodulatory system.

  18. Metabolic and demographic feedbacks shape the emergent spatial structure and function of microbial communities.

    Directory of Open Access Journals (Sweden)

    Sylvie Estrela

    Full Text Available Microbes are predominantly found in surface-attached and spatially structured polymicrobial communities. Within these communities, microbial cells excrete a wide range of metabolites, setting the stage for interspecific metabolic interactions. The links, however, between metabolic and ecological interactions (functional relationships, and species spatial organization (structural relationships are still poorly understood. Here, we use an individual-based modelling framework to simulate the growth of a two-species surface-attached community where food (resource is traded for detoxification (service and investigate how metabolic constraints of individual species shape the emergent structural and functional relationships of the community. We show that strong metabolic interdependence drives the emergence of mutualism, robust interspecific mixing, and increased community productivity. Specifically, we observed a striking and highly stable emergent lineage branching pattern, generating a persistent lineage mixing that was absent when the metabolic exchange was removed. These emergent community properties are driven by demographic feedbacks, such that aid from neighbouring cells directly enhances focal cell growth, which in turn feeds back to neighbour fecundity. In contrast, weak metabolic interdependence drives conflict (exploitation or competition, and in turn greater interspecific segregation. Together, these results support the idea that species structural and functional relationships represent the net balance of metabolic interdependencies.

  19. Visualizing Escherichia coli sub-cellular structure using sparse deconvolution Spatial Light Interference Tomography.

    Directory of Open Access Journals (Sweden)

    Mustafa Mir

    Full Text Available Studying the 3D sub-cellular structure of living cells is essential to our understanding of biological function. However, tomographic imaging of live cells is challenging mainly because they are transparent, i.e., weakly scattering structures. Therefore, this type of imaging has been implemented largely using fluorescence techniques. While confocal fluorescence imaging is a common approach to achieve sectioning, it requires fluorescence probes that are often harmful to the living specimen. On the other hand, by using the intrinsic contrast of the structures it is possible to study living cells in a non-invasive manner. One method that provides high-resolution quantitative information about nanoscale structures is a broadband interferometric technique known as Spatial Light Interference Microscopy (SLIM. In addition to rendering quantitative phase information, when combined with a high numerical aperture objective, SLIM also provides excellent depth sectioning capabilities. However, like in all linear optical systems, SLIM's resolution is limited by diffraction. Here we present a novel 3D field deconvolution algorithm that exploits the sparsity of phase images and renders images with resolution beyond the diffraction limit. We employ this label-free method, called deconvolution Spatial Light Interference Tomography (dSLIT, to visualize coiled sub-cellular structures in E. coli cells which are most likely the cytoskeletal MreB protein and the division site regulating MinCDE proteins. Previously these structures have only been observed using specialized strains and plasmids and fluorescence techniques. Our results indicate that dSLIT can be employed to study such structures in a practical and non-invasive manner.

  20. High-throughput determination of RNA structure by proximity ligation.

    Science.gov (United States)

    Ramani, Vijay; Qiu, Ruolan; Shendure, Jay

    2015-09-01

    We present an unbiased method to globally resolve RNA structures through pairwise contact measurements between interacting regions. RNA proximity ligation (RPL) uses proximity ligation of native RNA followed by deep sequencing to yield chimeric reads with ligation junctions in the vicinity of structurally proximate bases. We apply RPL in both baker's yeast (Saccharomyces cerevisiae) and human cells and generate contact probability maps for ribosomal and other abundant RNAs, including yeast snoRNAs, the RNA subunit of the signal recognition particle and the yeast U2 spliceosomal RNA homolog. RPL measurements correlate with established secondary structures for these RNA molecules, including stem-loop structures and long-range pseudoknots. We anticipate that RPL will complement the current repertoire of computational and experimental approaches in enabling the high-throughput determination of secondary and tertiary RNA structures.

  1. Orientation determination of interfacial beta-sheet structures in situ.

    Science.gov (United States)

    Nguyen, Khoi Tan; King, John Thomas; Chen, Zhan

    2010-07-01

    Structural information such as orientations of interfacial proteins and peptides is important for understanding properties and functions of such biological molecules, which play crucial roles in biological applications and processes such as antimicrobial selectivity, membrane protein activity, biocompatibility, and biosensing performance. The alpha-helical and beta-sheet structures are the most widely encountered secondary structures in peptides and proteins. In this paper, for the first time, a method to quantify the orientation of the interfacial beta-sheet structure using a combined attenuated total reflectance Fourier transformation infrared spectroscopic (ATR-FTIR) and sum frequency generation (SFG) vibrational spectroscopic study was developed. As an illustration of the methodology, the orientation of tachyplesin I, a 17 amino acid peptide with an antiparallel beta-sheet, adsorbed to polymer surfaces as well as associated with a lipid bilayer was determined using the regular and chiral SFG spectra, together with polarized ATR-FTIR amide I signals. Both the tilt angle (theta) and the twist angle (psi) of the beta-sheet at interfaces are determined. The developed method in this paper can be used to obtain in situ structural information of beta-sheet components in complex molecules. The combination of this method and the existing methodology that is currently used to investigate alpha-helical structures will greatly broaden the application of optical spectroscopy in physical chemistry, biochemistry, biophysics, and structural biology.

  2. Nutritional deficits during early development affect hippocampal structure and spatial memory later in life.

    Science.gov (United States)

    Pravosudov, Vladimir V; Lavenex, Pierre; Omanska, Alicja

    2005-10-01

    Development rates vary among individuals, often as a result of direct competition for food. Survival of young might depend on their learning abilities, but it remains unclear whether learning abilities are affected by nutrition during development. The authors demonstrated that compared with controls, 1-year-old Western scrub jays (Aphelocoma californica) that experienced nutritional deficits during early posthatching development had smaller hippocampi with fewer neurons and performed worse in a cache recovery task and in a spatial version of an associative learning task. In contrast, performance of nutritionally deprived birds was similar to that of controls in 2 color versions of an associative learning task. These findings suggest that nutritional deficits during early development have long-term consequences for hippocampal structure and spatial memory, which, in turn, are likely to have a strong impact on animals' future fitness.

  3. A novel approach for introducing cloud spatial structure into cloud radiative transfer parameterizations

    International Nuclear Information System (INIS)

    Huang, Dong; Liu, Yangang

    2014-01-01

    Subgrid-scale variability is one of the main reasons why parameterizations are needed in large-scale models. Although some parameterizations started to address the issue of subgrid variability by introducing a subgrid probability distribution function for relevant quantities, the spatial structure has been typically ignored and thus the subgrid-scale interactions cannot be accounted for physically. Here we present a new statistical-physics-like approach whereby the spatial autocorrelation function can be used to physically capture the net effects of subgrid cloud interaction with radiation. The new approach is able to faithfully reproduce the Monte Carlo 3D simulation results with several orders less computational cost, allowing for more realistic representation of cloud radiation interactions in large-scale models. (letter)

  4. A novel approach for introducing cloud spatial structure into cloud radiative transfer parameterizations

    Science.gov (United States)

    Huang, Dong; Liu, Yangang

    2014-12-01

    Subgrid-scale variability is one of the main reasons why parameterizations are needed in large-scale models. Although some parameterizations started to address the issue of subgrid variability by introducing a subgrid probability distribution function for relevant quantities, the spatial structure has been typically ignored and thus the subgrid-scale interactions cannot be accounted for physically. Here we present a new statistical-physics-like approach whereby the spatial autocorrelation function can be used to physically capture the net effects of subgrid cloud interaction with radiation. The new approach is able to faithfully reproduce the Monte Carlo 3D simulation results with several orders less computational cost, allowing for more realistic representation of cloud radiation interactions in large-scale models.

  5. Structure and Spatial Distribution of Ge Nanocrystals Subjected to Fast Neutron Irradiation

    Directory of Open Access Journals (Sweden)

    Alexander N. Ionov

    2011-07-01

    Full Text Available The influence of fast neutron irradiation on the structure and spatial distribution of Ge nanocrystals (NC embedded in an amorphous SiO2 matrix has been studied. The investigation was conducted by means of laser Raman Scattering (RS, High Resolution Transmission Electron Microscopy (HR-TEM and X-ray photoelectron spectroscopy (XPS. The irradiation of Ge- NC samples by a high dose of fast neutrons lead to a partial destruction of the nanocrystals. Full reconstruction of crystallinity was achieved after annealing the radiation damage at 8000C, which resulted in full restoration of the RS spectrum. HR-TEM images show, however, that the spatial distributions of Ge-NC changed as a result of irradiation and annealing. A sharp decrease in NC distribution towards the SiO2 surface has been observed. This was accompanied by XPS detection of Ge oxides and elemental Ge within both the surface and subsurface region.

  6. Structural response of existing spatial truss roof construction based on Cosserat rod theory

    Science.gov (United States)

    Miśkiewicz, Mikołaj

    2018-04-01

    Paper presents the application of the Cosserat rod theory and newly developed associated finite elements code as the tools that support in the expert-designing engineering practice. Mechanical principles of the 3D spatially curved rods, dynamics (statics) laws, principle of virtual work are discussed. Corresponding FEM approach with interpolation and accumulation techniques of state variables are shown that enable the formulation of the C0 Lagrangian rod elements with 6-degrees of freedom per node. Two test examples are shown proving the correctness and suitability of the proposed formulation. Next, the developed FEM code is applied to assess the structural response of the spatial truss roof of the "Olivia" Sports Arena Gdansk, Poland. The numerical results are compared with load test results. It is shown that the proposed FEM approach yields correct results.

  7. Directional approach to spatial structure of solutions to the Navier–Stokes equations in the plane

    International Nuclear Information System (INIS)

    Konieczny, P; Mucha, P B

    2011-01-01

    We investigate a steady flow of incompressible fluid in the plane. The motion is governed by the Navier–Stokes equations with prescribed velocity u ∞ at infinity. The main result shows the existence of unique solutions for arbitrary force, provided sufficient largeness of u ∞ . Furthermore a spatial structure of the solution is obtained in comparison with the Oseen flow. A key element of our new approach is based on a setting which treats the direction of the flow as the time direction. The analysis is done in the framework of the Fourier transform taken in one (perpendicular) direction and a special choice of function spaces which take into account the inhomogeneous character of the symbol of the Oseen system. From that point of view our technique can be used as an effective tool in examining spatial asymptotics of solutions to other systems modelled by elliptic equations

  8. Disease spread across multiple scales in a spatial hierarchy: effect of host spatial structure and of inoculum quantity and distribution.

    Science.gov (United States)

    Gosme, Marie; Lucas, Philippe

    2009-07-01

    Spatial patterns of both the host and the disease influence disease spread and crop losses. Therefore, the manipulation of these patterns might help improve control strategies. Considering disease spread across multiple scales in a spatial hierarchy allows one to capture important features of epidemics developing in space without using explicitly spatialized variables. Thus, if the system under study is composed of roots, plants, and planting hills, the effect of host spatial pattern can be studied by varying the number of plants per planting hill. A simulation model based on hierarchy theory was used to simulate the effects of large versus small planting hills, low versus high level of initial infections, and aggregated versus uniform distribution of initial infections. The results showed that aggregating the initially infected plants always resulted in slower epidemics than spreading out the initial infections uniformly. Simulation results also showed that, in most cases, disease epidemics were slower in the case of large host aggregates (100 plants/hill) than with smaller aggregates (25 plants/hill), except when the initially infected plants were both numerous and spread out uniformly. The optimal strategy for disease control depends on several factors, including initial conditions. More importantly, the model offers a framework to account for the interplay between the spatial characteristics of the system, rates of infection, and aggregation of the disease.

  9. Simple vibration modeling of structural fuzzy with continuous boundary by including two-dimensional spatial memory

    DEFF Research Database (Denmark)

    Friis, Lars; Ohlrich, Mogens

    2008-01-01

    Many complicated systems of practical interest consist basically of a well-defined outer shell-like master structure and a complicated internal structure with uncertain dynamic properties. Using the "fuzzy structure theory" for predicting audible frequency vibration, the internal structure......-dimensional continuous boundary. Additionally, a simple method for determining the so-called equivalent coupling factor is presented. The validity of this method is demonstrated by numerical simulations of the vibration response of a master plate structure with fuzzy attachments. It is revealed that the method performs...

  10. Direct electron crystallographic determination of zeolite zonal structures

    International Nuclear Information System (INIS)

    Dorset, Douglas L.; Gilmore, Christopher J.; Jorda, Jose Luis; Nicolopoulos, Stavros

    2007-01-01

    The prospect for improving the success of ab initio zeolite structure investigations with electron diffraction data is evaluated. First of all, the quality of intensities obtained by precession electron diffraction at small hollow cone illumination angles is evaluated for seven representative materials: ITQ-1, ITQ-7, ITQ-29, ZSM-5, ZSM-10, mordenite, and MCM-68. It is clear that, for most examples, an appreciable fraction of a secondary scattering perturbation is removed by precession at small angles. In one case, ZSM-10, it can also be argued that precession diffraction produces a dramatically improved 'kinematical' data set. There seems to no real support for application of a Lorentz correction to these data and there is no reason to expect for any of these samples that a two-beam dynamical scattering relationship between structure factor amplitude and observed intensity should be valid. Removal of secondary scattering by the precession mode appears to facilitate ab initio structure analysis. Most zeolite structures investigated could be solved by maximum entropy and likelihood phasing via error-correcting codes when precession data were used. Examples include the projected structure of mordenite that could not be determined from selected area data alone. One anomaly is the case of ZSM-5, where the best structure determination in projection is made from selected area diffraction data. In a control study, the zonal structure of SSZ-48 could be determined from selected area diffraction data by either maximum entropy and likelihood or traditional direct methods. While the maximum entropy and likelihood approach enjoys some advantages over traditional direct methods (non-dependence on predicted phase invariant sums), some effort must be made to improve the figures of merit used to identify potential structure solutions

  11. Document boundary determination using structural and lexical analysis

    Science.gov (United States)

    Taghva, Kazem; Cartright, Marc-Allen

    2009-01-01

    The document boundary determination problem is the process of identifying individual documents in a stack of papers. In this paper, we report on a classification system for automation of this process. The system employs features based on document structure and lexical content. We also report on experimental results to support the effectiveness of this system.

  12. New method to determine structures in thermonuclear plasmas

    International Nuclear Information System (INIS)

    Tanzi, C.P.

    1998-01-01

    The information from tomographic methods is not always sufficient to determine fast changing structures, e.g. very hot plasmas. A new method has been developed by means of which, among other things, physical mechanisms of plasma instability can be disentangled. 4 refs

  13. Dynamic Capital Structure: Dynamics, Determinants and Speed of Adjustment

    NARCIS (Netherlands)

    Tamirat, A.S.; Trujillo Barrera, A.A.; Pennings, J.M.E.

    2017-01-01

    The corporate finance literature has focused on explaining the determinants of firms target capital structure and speed of adjustment using the well-established theories such as pecking order, signaling and trade-off theories. However, less attention has been paid to understanding the financing

  14. Farm Target Capital Structure: Dynamics, Determinants and Speed of Adjustment

    NARCIS (Netherlands)

    Tamirat, A.S.; Trujillo Barrera, A.A.; Pennings, J.M.E.

    2017-01-01

    The corporate finance literature has focused on explaining the determinants of firms target capital structure and speed of adjustment using the well-established theories such as pecking order, signaling and trade-off theories. However, less attention has been paid to understanding the financing

  15. A Laboratory Exercise in the Determination of Carbohydrate Structures.

    Science.gov (United States)

    White, Bernard J.; Robyt, John F.

    1988-01-01

    Describes an experiment in which students are given a naturally occurring oligosaccharide as an unknown and are asked to determine both its monosaccharide composition and its structure. Discusses methods and experimental techniques including thin layer chromatography and the use of enzymes. (CW)

  16. Determining modulus of elasticity of ancient structural timber

    Science.gov (United States)

    Houjiang Zhang; Lei Zhu; Yanliang Sun; Xiping Wang; Haicheng Yan

    2011-01-01

    During maintenance of ancient timber architectures, it is important to determine mechanical properties of the wood component materials non-destructively and effectively, so that degraded members may be replaced or repaired to avoid structural failure. Experimental materials are four larch (Larix principis-rupprechtii Mayr.) components, which were taken down from the...

  17. Macromolecular structure determination in the post-genome era

    International Nuclear Information System (INIS)

    Kuhn, P.; Soltis, S.M.

    2001-01-01

    Recent advances in genetics, molecular biology and crystallographic instrumentation and methodology have led to a revolution in the field of Structural Molecular Biology (SMB). These combined advances have paved the way to a more complete and detailed understanding of the biological macromolecules that make up an organism, both in terms of their individual functions and also the interactions between them. In this paper we describe a large-scale, genomic approach to the three-dimensional structure determination of macromolecules and their complexes, using high-throughput methodology to streamline all aspects of the process. This task requires the development of automated high-intensity synchrotron beam lines for X-ray diffraction data collection from single crystal samples. Furthermore, these beam lines must be operated within a sophisticated software and hardware environment, which is capable of delivering a completely automated structure determination pipeline. The SMB resource at SSRL is developing a system for the structure determination steps of this process, starting with the initial characterization of the frozen sample, followed by data collection, data reduction, phase determination, and model building. This paper focuses on the data collection elements of this high-throughput system

  18. Spatial variation and socio-economic determinants of Plasmodium falciparum infection in northeastern Tanzania

    DEFF Research Database (Denmark)

    Mmbando, Bruno P; Kamugisha, Mathias L; Lusingu, John P

    2011-01-01

    system (GPS) unit. The effects of risk factors were determined using generalized estimating equation and spatial risk of P. falciparum infection was modelled using a kernel (non-parametric) method. RESULTS: There was a significant spatial variation of P. falciparum infection, and urban areas were......ABSTRACT: BACKGROUND: Malaria due to Plasmodium falciparum is the leading cause of morbidity and mortality in Tanzania. According to health statistics, malaria accounts for about 30% and 15% of hospital admissions and deaths, respectively. The risk of P. falciparum infection varies across...... the country. This study describes the spatial variation and socio-economic determinants of P. falciparum infection in northeastern Tanzania. METHODS: The study was conducted in 14 villages located in highland, lowland and urban areas of Korogwe district. Four cross-sectional malaria surveys involving...

  19. From bacterial to human dihydrouridine synthase: automated structure determination

    Energy Technology Data Exchange (ETDEWEB)

    Whelan, Fiona, E-mail: fiona.whelan@york.ac.uk; Jenkins, Huw T., E-mail: fiona.whelan@york.ac.uk [The University of York, Heslington, York YO10 5DD (United Kingdom); Griffiths, Samuel C. [University of Oxford, Headington, Oxford OX3 7BN (United Kingdom); Byrne, Robert T. [Ludwig-Maximilians-University Munich, Feodor-Lynen-Strasse 25, 81377 Munich (Germany); Dodson, Eleanor J.; Antson, Alfred A., E-mail: fiona.whelan@york.ac.uk [The University of York, Heslington, York YO10 5DD (United Kingdom)

    2015-06-30

    The crystal structure of a human dihydrouridine synthase, an enzyme associated with lung cancer, with 18% sequence identity to a T. maritima enzyme, has been determined at 1.9 Å resolution by molecular replacement after extensive molecular remodelling of the template. The reduction of uridine to dihydrouridine at specific positions in tRNA is catalysed by dihydrouridine synthase (Dus) enzymes. Increased expression of human dihydrouridine synthase 2 (hDus2) has been linked to pulmonary carcinogenesis, while its knockdown decreased cancer cell line viability, suggesting that it may serve as a valuable target for therapeutic intervention. Here, the X-ray crystal structure of a construct of hDus2 encompassing the catalytic and tRNA-recognition domains (residues 1–340) determined at 1.9 Å resolution is presented. It is shown that the structure can be determined automatically by phenix.mr-rosetta starting from a bacterial Dus enzyme with only 18% sequence identity and a significantly divergent structure. The overall fold of the human Dus2 is similar to that of bacterial enzymes, but has a larger recognition domain and a unique three-stranded antiparallel β-sheet insertion into the catalytic domain that packs next to the recognition domain, contributing to domain–domain interactions. The structure may inform the development of novel therapeutic approaches in the fight against lung cancer.

  20. From bacterial to human dihydrouridine synthase: automated structure determination

    International Nuclear Information System (INIS)

    Whelan, Fiona; Jenkins, Huw T.; Griffiths, Samuel C.; Byrne, Robert T.; Dodson, Eleanor J.; Antson, Alfred A.

    2015-01-01

    The crystal structure of a human dihydrouridine synthase, an enzyme associated with lung cancer, with 18% sequence identity to a T. maritima enzyme, has been determined at 1.9 Å resolution by molecular replacement after extensive molecular remodelling of the template. The reduction of uridine to dihydrouridine at specific positions in tRNA is catalysed by dihydrouridine synthase (Dus) enzymes. Increased expression of human dihydrouridine synthase 2 (hDus2) has been linked to pulmonary carcinogenesis, while its knockdown decreased cancer cell line viability, suggesting that it may serve as a valuable target for therapeutic intervention. Here, the X-ray crystal structure of a construct of hDus2 encompassing the catalytic and tRNA-recognition domains (residues 1–340) determined at 1.9 Å resolution is presented. It is shown that the structure can be determined automatically by phenix.mr-rosetta starting from a bacterial Dus enzyme with only 18% sequence identity and a significantly divergent structure. The overall fold of the human Dus2 is similar to that of bacterial enzymes, but has a larger recognition domain and a unique three-stranded antiparallel β-sheet insertion into the catalytic domain that packs next to the recognition domain, contributing to domain–domain interactions. The structure may inform the development of novel therapeutic approaches in the fight against lung cancer

  1. Using photoelectron diffraction to determine complex molecular adsorption structures

    International Nuclear Information System (INIS)

    Woodruff, D P

    2010-01-01

    Backscattering photoelectron diffraction, particularly in the energy-scan mode, is now an established technique for determining in a quantitative fashion the local structure of adsorbates on surfaces, and has been used successfully for ∼100 adsorbate phases. The elemental and chemical-state specificity afforded by the characteristic core level photoelectron binding energies means that it has particular advantages for molecular adsorbates, as the local geometry of inequivalent atoms in the molecule can be determined in a largely independent fashion. On the other hand, polyatomic molecules present a general problem for all methods of surface structure determination in that a mismatch of intramolecular distances with interatomic distances on the substrate surface means that the atoms in the adsorbed molecule are generally in low-symmetry sites. The quantities measured experimentally then represent an incoherent sum of the properties of each structural domain that is inequivalent with respect to the substrate point group symmetry. This typically leads to greater ambiguity or precision in the structural solutions. The basic principles of the method are described and illustrated with a simple example involving molecule/substrate bonding through only one constituent atom (TiO 2 -(110)/H 2 O). This example demonstrates the importance of obtaining quantitative local structural information. Further examples illustrate both the successes and the problems of this approach when applied to somewhat more complex molecular adsorbates.

  2. An integrated photogrammetric and spatial database management system for producing fully structured data using aerial and remote sensing images.

    Science.gov (United States)

    Ahmadi, Farshid Farnood; Ebadi, Hamid

    2009-01-01

    3D spatial data acquired from aerial and remote sensing images by photogrammetric techniques is one of the most accurate and economic data sources for GIS, map production, and spatial data updating. However, there are still many problems concerning storage, structuring and appropriate management of spatial data obtained using these techniques. According to the capabilities of spatial database management systems (SDBMSs); direct integration of photogrammetric and spatial database management systems can save time and cost of producing and updating digital maps. This integration is accomplished by replacing digital maps with a single spatial database. Applying spatial databases overcomes the problem of managing spatial and attributes data in a coupled approach. This management approach is one of the main problems in GISs for using map products of photogrammetric workstations. Also by the means of these integrated systems, providing structured spatial data, based on OGC (Open GIS Consortium) standards and topological relations between different feature classes, is possible at the time of feature digitizing process. In this paper, the integration of photogrammetric systems and SDBMSs is evaluated. Then, different levels of integration are described. Finally design, implementation and test of a software package called Integrated Photogrammetric and Oracle Spatial Systems (IPOSS) is presented.

  3. An Integrated Photogrammetric and Spatial Database Management System for Producing Fully Structured Data Using Aerial and Remote Sensing Images

    Directory of Open Access Journals (Sweden)

    Farshid Farnood Ahmadi

    2009-03-01

    Full Text Available 3D spatial data acquired from aerial and remote sensing images by photogrammetric techniques is one of the most accurate and economic data sources for GIS, map production, and spatial data updating. However, there are still many problems concerning storage, structuring and appropriate management of spatial data obtained using these techniques. According to the capabilities of spatial database management systems (SDBMSs; direct integration of photogrammetric and spatial database management systems can save time and cost of producing and updating digital maps. This integration is accomplished by replacing digital maps with a single spatial database. Applying spatial databases overcomes the problem of managing spatial and attributes data in a coupled approach. This management approach is one of the main problems in GISs for using map products of photogrammetric workstations. Also by the means of these integrated systems, providing structured spatial data, based on OGC (Open GIS Consortium standards and topological relations between different feature classes, is possible at the time of feature digitizing process. In this paper, the integration of photogrammetric systems and SDBMSs is evaluated. Then, different levels of integration are described. Finally design, implementation and test of a software package called Integrated Photogrammetric and Oracle Spatial Systems (IPOSS is presented.

  4. Determination of Spatial Chromium Contamination of the Environment around Industrial Zones

    Science.gov (United States)

    Homa, Dereje; Haile, Ermias

    2016-01-01

    This study was conducted to determine the spatial levels of chromium contamination of water, agricultural soil, and vegetables in the leather tanning industrial areas using spectrophotometric methods. The results showed elevated accumulation of total Cr ranging from 10.85 ± 0.885 mg/L to 39.696 ± 0.326 mg/L, 16.225 ± 0.12 mg/Kg to 1581.667 ± 0.122 mg/Kg, and 1.0758 ± 0.05348 mg/Kg to 11.75 ± 0.206 mg/Kg in water, agricultural soil, and vegetable samples, respectively. The highest levels of chromium (VI) found from the speciation study were 2.23 ± 0.032 mg/Kg and 0.322 ± 0.07 mg/L in soil and water samples, respectively, which decreased with distance from the tannery. Among the vegetables, the highest load of Cr(VI) was detected in onion root (0.048 ± 0.065 mg/Kg) and the lowest (0.004 ± 0.007 mg/Kg) in fruit of green pepper. The detected levels of Cr in all of the suggested samples were above the WHO permissible limits. The variations of the levels Cr(III) and Cr(VI) contamination of the environment with distance from the tannery were statistically significant (p = 0.05). Similarly, significant difference in the levels of Cr among the tested vegetables was recorded. The levels increased with decreasing distance from the effluent channel. PMID:28044079

  5. Determination of Spatial Chromium Contamination of the Environment around Industrial Zones

    Directory of Open Access Journals (Sweden)

    Dereje Homa

    2016-01-01

    Full Text Available This study was conducted to determine the spatial levels of chromium contamination of water, agricultural soil, and vegetables in the leather tanning industrial areas using spectrophotometric methods. The results showed elevated accumulation of total Cr ranging from 10.85±0.885 mg/L to 39.696±0.326 mg/L, 16.225±0.12 mg/Kg to 1581.667±0.122 mg/Kg, and 1.0758±0.05348 mg/Kg to 11.75±0.206 mg/Kg in water, agricultural soil, and vegetable samples, respectively. The highest levels of chromium (VI found from the speciation study were 2.23±0.032 mg/Kg and 0.322±0.07 mg/L in soil and water samples, respectively, which decreased with distance from the tannery. Among the vegetables, the highest load of Cr(VI was detected in onion root (0.048±0.065 mg/Kg and the lowest (0.004±0.007 mg/Kg in fruit of green pepper. The detected levels of Cr in all of the suggested samples were above the WHO permissible limits. The variations of the levels Cr(III and Cr(VI contamination of the environment with distance from the tannery were statistically significant (p=0.05. Similarly, significant difference in the levels of Cr among the tested vegetables was recorded. The levels increased with decreasing distance from the effluent channel.

  6. Determination of Spatial Chromium Contamination of the Environment around Industrial Zones.

    Science.gov (United States)

    Homa, Dereje; Haile, Ermias; Washe, Alemayehu P

    2016-01-01

    This study was conducted to determine the spatial levels of chromium contamination of water, agricultural soil, and vegetables in the leather tanning industrial areas using spectrophotometric methods. The results showed elevated accumulation of total Cr ranging from 10.85 ± 0.885 mg/L to 39.696 ± 0.326 mg/L, 16.225 ± 0.12 mg/Kg to 1581.667 ± 0.122 mg/Kg, and 1.0758 ± 0.05348 mg/Kg to 11.75 ± 0.206 mg/Kg in water, agricultural soil, and vegetable samples, respectively. The highest levels of chromium (VI) found from the speciation study were 2.23 ± 0.032 mg/Kg and 0.322 ± 0.07 mg/L in soil and water samples, respectively, which decreased with distance from the tannery. Among the vegetables, the highest load of Cr(VI) was detected in onion root (0.048 ± 0.065 mg/Kg) and the lowest (0.004 ± 0.007 mg/Kg) in fruit of green pepper. The detected levels of Cr in all of the suggested samples were above the WHO permissible limits. The variations of the levels Cr(III) and Cr(VI) contamination of the environment with distance from the tannery were statistically significant ( p = 0.05). Similarly, significant difference in the levels of Cr among the tested vegetables was recorded. The levels increased with decreasing distance from the effluent channel.

  7. Macromolecular structure determination in the post-genome era

    CERN Document Server

    Kuhn, P

    2001-01-01

    Recent advances in genetics, molecular biology and crystallographic instrumentation and methodology have led to a revolution in the field of Structural Molecular Biology (SMB). These combined advances have paved the way to a more complete and detailed understanding of the biological macromolecules that make up an organism, both in terms of their individual functions and also the interactions between them. In this paper we describe a large-scale, genomic approach to the three-dimensional structure determination of macromolecules and their complexes, using high-throughput methodology to streamline all aspects of the process. This task requires the development of automated high-intensity synchrotron beam lines for X-ray diffraction data collection from single crystal samples. Furthermore, these beam lines must be operated within a sophisticated software and hardware environment, which is capable of delivering a completely automated structure determination pipeline. The SMB resource at SSRL is developing a system...

  8. Direct experimental determination of the atomic structure at internal interfaces

    Energy Technology Data Exchange (ETDEWEB)

    Browning, N.D. [Oak Ridge National Lab., TN (United States)]|[Illinois Univ., Chicago, IL (United States); Pennycook, S.J. [Oak Ridge National Lab., TN (United States)

    1995-07-01

    A crucial first step in understanding the effect that internal interfaces have on the properties of materials is the ability to determine the atomic structure at the interface. As interfaces can contain atomic disorder, dislocations, segregated impurities and interphases, sensitivity to all of these features is essential for complete experimental characterization. By combining Z-contrast imaging and electron energy loss spectroscopy (EELS) in a dedicated scanning transmission electron microscope (STEM), the ability to probe the structure, bonding and composition at interfaces with the necessary atomic resolution has been obtained. Experimental conditions can be controlled to provide, simultaneously, both incoherent imaging and spectroscopy. This enables interface structures observed in the image to be interpreted intuitively and the bonding in a specified atomic column to be probed directly by EELS. The bonding and structure information can then be correlated using bond-valence sum analysis to produce structural models. This technique is demonstrated for 25{degrees}, 36{degrees} and 67{degrees} symmetric and 45{degrees} and 25{degrees} asymmetric [001] tilt grain boundaries in SrTiO{sub 3} The structures of both types of boundary were found to contain partially occupied columns in the boundary plane. From these experimental results, a series of structural units were identified which could be combined, using continuity of gain boundary structure principles, to construct all [001] tilt boundaries in SrTiO{sub 3}. Using these models, the ability of this technique to address the issues of vacancies and dopant segregation at grain boundaries in electroceramics is discussed.

  9. Global search in photoelectron diffraction structure determination using genetic algorithms

    Energy Technology Data Exchange (ETDEWEB)

    Viana, M L [Departamento de Fisica, Icex, UFMG, Belo Horizonte, Minas Gerais (Brazil); Muino, R Diez [Donostia International Physics Center DIPC, Paseo Manuel de Lardizabal 4, 20018 San Sebastian (Spain); Soares, E A [Departamento de Fisica, Icex, UFMG, Belo Horizonte, Minas Gerais (Brazil); Hove, M A Van [Department of Physics and Materials Science, City University of Hong Kong, Hong Kong (China); Carvalho, V E de [Departamento de Fisica, Icex, UFMG, Belo Horizonte, Minas Gerais (Brazil)

    2007-11-07

    Photoelectron diffraction (PED) is an experimental technique widely used to perform structural determinations of solid surfaces. Similarly to low-energy electron diffraction (LEED), structural determination by PED requires a fitting procedure between the experimental intensities and theoretical results obtained through simulations. Multiple scattering has been shown to be an effective approach for making such simulations. The quality of the fit can be quantified through the so-called R-factor. Therefore, the fitting procedure is, indeed, an R-factor minimization problem. However, the topography of the R-factor as a function of the structural and non-structural surface parameters to be determined is complex, and the task of finding the global minimum becomes tough, particularly for complex structures in which many parameters have to be adjusted. In this work we investigate the applicability of the genetic algorithm (GA) global optimization method to this problem. The GA is based on the evolution of species, and makes use of concepts such as crossover, elitism and mutation to perform the search. We show results of its application in the structural determination of three different systems: the Cu(111) surface through the use of energy-scanned experimental curves; the Ag(110)-c(2 x 2)-Sb system, in which a theory-theory fit was performed; and the Ag(111) surface for which angle-scanned experimental curves were used. We conclude that the GA is a highly efficient method to search for global minima in the optimization of the parameters that best fit the experimental photoelectron diffraction intensities to the theoretical ones.

  10. CAPITAL STRUCTURE DETERMINANTS: EVIDENCE FROM PALESTINE AND EGYPT STOCK EXCHANGES

    Directory of Open Access Journals (Sweden)

    Abdul Razak Abdul Hadi

    2017-04-01

    Full Text Available Abstract -This study is driven by the motivation to examine the capital structure determinants for Palestine Stock Exchange (PEX and Egypt Stock Exchange (EGX. Within the framework of capital structure theories, this study uses Generalized Method of Moments (GMM,1982 as an estimation model employing quarterly panel data analysis during the observed period from 2008 till 2012. The test results from GMM indicate that all the examined determinants have significant relationship with leverage. It has a negative value with liquidity, non-debt tax shield, profitability, size and growth. The Egyptian firms have some uniqueness in its trend. Current assets, debt ratio and liquidity behave positively with leverage except for growth. The other tested determinants in Egyptian companies are found to be not significant.

  11. The molecular clock of neutral evolution can be accelerated or slowed by asymmetric spatial structure.

    Science.gov (United States)

    Allen, Benjamin; Sample, Christine; Dementieva, Yulia; Medeiros, Ruben C; Paoletti, Christopher; Nowak, Martin A

    2015-02-01

    Over time, a population acquires neutral genetic substitutions as a consequence of random drift. A famous result in population genetics asserts that the rate, K, at which these substitutions accumulate in the population coincides with the mutation rate, u, at which they arise in individuals: K = u. This identity enables genetic sequence data to be used as a "molecular clock" to estimate the timing of evolutionary events. While the molecular clock is known to be perturbed by selection, it is thought that K = u holds very generally for neutral evolution. Here we show that asymmetric spatial population structure can alter the molecular clock rate for neutral mutations, leading to either Ku. Our results apply to a general class of haploid, asexually reproducing, spatially structured populations. Deviations from K = u occur because mutations arise unequally at different sites and have different probabilities of fixation depending on where they arise. If birth rates are uniform across sites, then K ≤ u. In general, K can take any value between 0 and Nu. Our model can be applied to a variety of population structures. In one example, we investigate the accumulation of genetic mutations in the small intestine. In another application, we analyze over 900 Twitter networks to study the effect of network topology on the fixation of neutral innovations in social evolution.

  12. The molecular clock of neutral evolution can be accelerated or slowed by asymmetric spatial structure.

    Directory of Open Access Journals (Sweden)

    Benjamin Allen

    2015-02-01

    Full Text Available Over time, a population acquires neutral genetic substitutions as a consequence of random drift. A famous result in population genetics asserts that the rate, K, at which these substitutions accumulate in the population coincides with the mutation rate, u, at which they arise in individuals: K = u. This identity enables genetic sequence data to be used as a "molecular clock" to estimate the timing of evolutionary events. While the molecular clock is known to be perturbed by selection, it is thought that K = u holds very generally for neutral evolution. Here we show that asymmetric spatial population structure can alter the molecular clock rate for neutral mutations, leading to either Ku. Our results apply to a general class of haploid, asexually reproducing, spatially structured populations. Deviations from K = u occur because mutations arise unequally at different sites and have different probabilities of fixation depending on where they arise. If birth rates are uniform across sites, then K ≤ u. In general, K can take any value between 0 and Nu. Our model can be applied to a variety of population structures. In one example, we investigate the accumulation of genetic mutations in the small intestine. In another application, we analyze over 900 Twitter networks to study the effect of network topology on the fixation of neutral innovations in social evolution.

  13. Geostatistical investigation into the temporal evolution of spatial structure in a shallow water table

    Directory of Open Access Journals (Sweden)

    S. W. Lyon

    2006-01-01

    Full Text Available Shallow water tables near-streams often lead to saturated, overland flow generating areas in catchments in humid climates. While these saturated areas are assumed to be principal biogeochemical hot-spots and important for issues such as non-point pollution sources, the spatial and temporal behavior of shallow water tables, and associated saturated areas, is not completely understood. This study demonstrates how geostatistical methods can be used to characterize the spatial and temporal variation of the shallow water table for the near-stream region. Event-based and seasonal changes in the spatial structure of the shallow water table, which influences the spatial pattern of surface saturation and related runoff generation, can be identified and used in conjunction to characterize the hydrology of an area. This is accomplished through semivariogram analysis and indicator kriging to produce maps combining soft data (i.e., proxy information to the variable of interest representing general shallow water table patterns with hard data (i.e., actual measurements that represent variation in the spatial structure of the shallow water table per rainfall event. The area used was a hillslope in the Catskill Mountains region of New York State. The shallow water table was monitored for a 120 m×180 m near-stream region at 44 sampling locations on 15-min intervals. Outflow of the area was measured at the same time interval. These data were analyzed at a short time interval (15 min and at a long time interval (months to characterize the changes in the hydrologic behavior of the hillslope. Indicator semivariograms based on binary-transformed ground water table data (i.e., 1 if exceeding the time-variable median depth to water table and 0 if not were created for both short and long time intervals. For the short time interval, the indicator semivariograms showed a high degree of spatial structure in the shallow water table for the spring, with increased range

  14. Geometrical modeling of a two-dimensional sensor array for determining spatial position of a passive object

    DEFF Research Database (Denmark)

    Harbo, Anders La-Cour

    2004-01-01

    This paper presents a model of an active sensor array which can determine the spatial position of a passive object by illuminating the object via a small set of emitters and measure the intensity of the reflection by means of a small set of receivers. All emitters and receivers are located...

  15. Spatial distribution of detrital resources determines the outcome of competition between bacteria and a facultative detritivorous worm

    NARCIS (Netherlands)

    Van Nugteren, P.; Herman, P.M.J.; Moodley, L.; Middelburg, J.J.; Vos, M.; Heip, C.H.R.

    2009-01-01

    Macrobenthic deposit feeders and bacteria compete for the same detrital food resources. We hypothesize that the spatial scale at which food is distributed in the sediment is an important factor determining the outcome of this competition. Macrobenthic deposit feeders are better adapted for fast

  16. An Investigation of the Fine Spatial Structure of Meteor Streams Using the Relational Database ``Meteor''

    Science.gov (United States)

    Karpov, A. V.; Yumagulov, E. Z.

    2003-05-01

    We have restored and ordered the archive of meteor observations carried out with a meteor radar complex ``KGU-M5'' since 1986. A relational database has been formed under the control of the Database Management System (DBMS) Oracle 8. We also improved and tested a statistical method for studying the fine spatial structure of meteor streams with allowance for the specific features of application of the DBMS. Statistical analysis of the results of observations made it possible to obtain information about the substance distribution in the Quadrantid, Geminid, and Perseid meteor streams.

  17. Spatially structured oscillations in a two-dimensional excitatory neuronal network with synaptic depression

    KAUST Repository

    Kilpatrick, Zachary P.; Bressloff, Paul C.

    2009-01-01

    We study the spatiotemporal dynamics of a two-dimensional excitatory neuronal network with synaptic depression. Coupling between populations of neurons is taken to be nonlocal, while depression is taken to be local and presynaptic. We show that the network supports a wide range of spatially structured oscillations, which are suggestive of phenomena seen in cortical slice experiments and in vivo. The particular form of the oscillations depends on initial conditions and the level of background noise. Given an initial, spatially localized stimulus, activity evolves to a spatially localized oscillating core that periodically emits target waves. Low levels of noise can spontaneously generate several pockets of oscillatory activity that interact via their target patterns. Periodic activity in space can also organize into spiral waves, provided that there is some source of rotational symmetry breaking due to external stimuli or noise. In the high gain limit, no oscillatory behavior exists, but a transient stimulus can lead to a single, outward propagating target wave. © Springer Science + Business Media, LLC 2009.

  18. Spatially structured oscillations in a two-dimensional excitatory neuronal network with synaptic depression

    KAUST Repository

    Kilpatrick, Zachary P.

    2009-10-29

    We study the spatiotemporal dynamics of a two-dimensional excitatory neuronal network with synaptic depression. Coupling between populations of neurons is taken to be nonlocal, while depression is taken to be local and presynaptic. We show that the network supports a wide range of spatially structured oscillations, which are suggestive of phenomena seen in cortical slice experiments and in vivo. The particular form of the oscillations depends on initial conditions and the level of background noise. Given an initial, spatially localized stimulus, activity evolves to a spatially localized oscillating core that periodically emits target waves. Low levels of noise can spontaneously generate several pockets of oscillatory activity that interact via their target patterns. Periodic activity in space can also organize into spiral waves, provided that there is some source of rotational symmetry breaking due to external stimuli or noise. In the high gain limit, no oscillatory behavior exists, but a transient stimulus can lead to a single, outward propagating target wave. © Springer Science + Business Media, LLC 2009.

  19. Understanding structure of urban traffic network based on spatial-temporal correlation analysis

    Science.gov (United States)

    Yang, Yanfang; Jia, Limin; Qin, Yong; Han, Shixiu; Dong, Honghui

    2017-08-01

    Understanding the structural characteristics of urban traffic network comprehensively can provide references for improving road utilization rate and alleviating traffic congestion. This paper focuses on the spatial-temporal correlations between different pairs of traffic series and proposes a complex network-based method of constructing the urban traffic network. In the network, the nodes represent road segments, and an edge between a pair of nodes is added depending on the result of significance test for the corresponding spatial-temporal correlation. Further, a modified PageRank algorithm, named the geographical weight-based PageRank algorithm (GWPA), is proposed to analyze the spatial distribution of important segments in the road network. Finally, experiments are conducted by using three kinds of traffic series collected from the urban road network in Beijing. Experimental results show that the urban traffic networks constructed by three traffic variables all indicate both small-world and scale-free characteristics. Compared with the results of PageRank algorithm, GWPA is proved to be valid in evaluating the importance of segments and identifying the important segments with small degree.

  20. SCANDI – an all-sky Doppler imager for studies of thermospheric spatial structure

    Directory of Open Access Journals (Sweden)

    A. L. Aruliah

    2010-02-01

    Full Text Available A new all-sky Fabry-Perot Interferometer called the Scanning Doppler Imager (SCANDI was built and installed at Longyearbyen in December 2006. Observations have been made of the Doppler shifts and Doppler broadening of the 630 nm airglow and aurora, from which upper thermospheric winds and temperatures are calculated. SCANDI allows measurements over a field-of-view (FOV with a horizontal radius of nearly 600 km for observations at an altitude of 250 km using a time resolution of 8 min. The instrument provides the ability to observe thermospheric spatial structure within a FOV which overlaps that of the EISCAT Svalbard radar and CUTLASS SuperDARN radars. Coordinating with these instruments provides an important opportunity for studying ion-neutral coupling. The all-sky image is divided into several sectors to provide a horizontal spatial resolution of between 100–300 km. This is a powerful extension in observational capability but requires careful calibration and data analysis, as described here. Two observation modes were used: a fixed and a scanning etalon gap. SCANDI results are corroborated using the Longyearbyen single look direction FPI, and ESR measurements of the ion temperatures. The data show thermospheric temperature gradients of a few Kelvins per kilometre, and a great deal of meso-scale variability on spatial scales of several tens of kilometres.

  1. STRUCTURE, SPATIAL DISTRIBUTION AND SEED YIELD FOR ANDIROBA (Carapa guianensis Aubl. IN SOUTH RORAIMA

    Directory of Open Access Journals (Sweden)

    Helio Tonini

    2009-10-01

    Full Text Available Andiroba is one of the Amazon species with great potential of exploration for timber and non-timber forest products (NFTPs. This work was carried out with the objective of studying the population structure, spatial distribution and seed yield in a native forest of andiroba in the south of Roraima state. A permanent sample plot of 300 x 300 m (9 ha was installed and all the trees with DBH equal or superior to 10 cm were identified, mapped and measured. In each tree, the light climate, crown form and lianas load were appraised. To identify the spatial distribution, the medium variance/average rate and the Morisita’s Index were used. The seed yield data were obtained by the seed weighing, being 145 trees monitored during 2006. The population presented a diametric distribution of the j inverted type, and a seed yield of 65,4 kg.ha-1 with average of 8,3 kg.tree-1 was observed. DBH ≥ 30 cm was considered as borderline for commercial seed yield, allowing stratifying the population in juveniles (DBH ≤ 30 cm and adults (DBH > 30 cm. The spatial distribution analysis showed that adult individuals presented random distribution and the juveniles tendency of grouping.

  2. X-ray structure determination and deuteration of nattokinase

    International Nuclear Information System (INIS)

    Yanagisawa, Yasuhide; Chatake, Toshiyuki; Naito, Sawa; Ohsugi, Tadanori; Yatagai, Chieko; Sumi, Hiroyuki; Kawaguchi, Akio; Chiba-Kamosida, Kaori; Ogawa, Megumi; Adachi, Tatsumi; Morimoto, Yukio

    2013-01-01

    X-ray structure determination and deuteration of nattokinase were performed to facilitate neutron crystallographic analysis. Nattokinase (NK) is a strong fibrinolytic enzyme, which is produced in abundance by Bacillus subtilis natto. Although NK is a member of the subtilisin family, it displays different substrate specificity when compared with other subtilisins. The results of molecular simulations predict that hydrogen arrangements around Ser221 at the active site probably account for the substrate specificity of NK. Therefore, neutron crystallographic analysis should provide valuable information that reveals the enzymatic mechanism of NK. In this report, the X-ray structure of the non-hydrogen form of undeuterated NK was determined, and the preparation of deuterated NK was successfully achieved. The non-hydrogen NK structure was determined at 1.74 Å resolution. The three-dimensional structures of NK and subtilisin E from Bacillus subtilis DB104 are near identical. Deuteration of NK was carried out by cultivating Bacillus subtilis natto in deuterated medium. The D 2 O resistant strain of Bacillus subtilis natto was obtained by successive cultivation rounds, in which the concentration of D 2 O in the medium was gradually increased. NK was purified from the culture medium and its activity was confirmed by the fibrin plate method. The results lay the framework for neutron protein crystallography analysis

  3. X-ray structure determination and deuteration of nattokinase

    Energy Technology Data Exchange (ETDEWEB)

    Yanagisawa, Yasuhide [Chiba Institute of Science, 15-8 Shiomi-cho, Cho-shi, Chiba 288-025 (Japan); Chatake, Toshiyuki [Kyoto University, Asashironishi 2, Kumatori, Osaka 590-0494 (Japan); Naito, Sawa; Ohsugi, Tadanori; Yatagai, Chieko; Sumi, Hiroyuki [Kurashiki University of Science and the Arts, 2640 Nishinoura, Tsurajima-cho, Kurashiki, Okayama 712-8505 (Japan); Kawaguchi, Akio [Kyoto University, Asashironishi 2, Kumatori, Osaka 590-0494 (Japan); Chiba-Kamosida, Kaori [Nippon Advanced Technology Co. Ltd, J-PARC, 2-4 Shirane Shirakata, Tokai, Ibaraki 319-1195 (Japan); Ogawa, Megumi; Adachi, Tatsumi [Chiba Institute of Science, 15-8 Shiomi-cho, Cho-shi, Chiba 288-025 (Japan); Morimoto, Yukio [Kyoto University, Asashironishi 2, Kumatori, Osaka 590-0494 (Japan)

    2013-11-01

    X-ray structure determination and deuteration of nattokinase were performed to facilitate neutron crystallographic analysis. Nattokinase (NK) is a strong fibrinolytic enzyme, which is produced in abundance by Bacillus subtilis natto. Although NK is a member of the subtilisin family, it displays different substrate specificity when compared with other subtilisins. The results of molecular simulations predict that hydrogen arrangements around Ser221 at the active site probably account for the substrate specificity of NK. Therefore, neutron crystallographic analysis should provide valuable information that reveals the enzymatic mechanism of NK. In this report, the X-ray structure of the non-hydrogen form of undeuterated NK was determined, and the preparation of deuterated NK was successfully achieved. The non-hydrogen NK structure was determined at 1.74 Å resolution. The three-dimensional structures of NK and subtilisin E from Bacillus subtilis DB104 are near identical. Deuteration of NK was carried out by cultivating Bacillus subtilis natto in deuterated medium. The D{sub 2}O resistant strain of Bacillus subtilis natto was obtained by successive cultivation rounds, in which the concentration of D{sub 2}O in the medium was gradually increased. NK was purified from the culture medium and its activity was confirmed by the fibrin plate method. The results lay the framework for neutron protein crystallography analysis.

  4. Overconfidence, Managerial Optimism, and the Determinants of Capital Structure

    Directory of Open Access Journals (Sweden)

    Alexandre di Miceli da Silveira

    2008-12-01

    Full Text Available This research examines the determinants of the capital structure of firms introducing a behavioral perspective that has received little attention in corporate finance literature. The following central hypothesis emerges from a set of recently developed theories: firms managed by optimistic and/or overconfident people will choose more levered financing structures than others, ceteris paribus. We propose different proxies for optimism/overconfidence, based on the manager’s status as an entrepreneur or non-entrepreneur, an idea that is supported by theories and solid empirical evidence, as well as on the pattern of ownership of the firm’s shares by its manager. The study also includes potential determinants of capital structure used in earlier research. We use a sample of Brazilian firms listed in the Sao Paulo Stock Exchange (Bovespa in the years 1998 to 2003. The empirical analysis suggests that the proxies for the referred cognitive biases are important determinants of capital structure. We also found as relevant explanatory variables: profitability, size, dividend payment and tangibility, as well as some indicators that capture the firms’ corporate governance standards. These results suggest that behavioral approaches based on human psychology research can offer relevant contributions to the understanding of corporate decision making.

  5. Laser-Induced Breakdown Spectroscopy (LIBS) for the Measurement of Spatial Structures and Fuel Distribution in Flames.

    Science.gov (United States)

    Kotzagianni, Maria; Kakkava, Eirini; Couris, Stelios

    2016-04-01

    Laser-induced breakdown spectroscopy (LIBS) is used for the mapping of local structures (i.e., reactants and products zones) and for the determination of fuel distribution by means of the local equivalence ratio ϕ in laminar, premixed air-hydrocarbon flames. The determination of laser threshold energy to induce breakdown in the different zones of flames is employed for the identification and demarcation of the local structures of a premixed laminar flame, while complementary results about fuel concentration were obtained from measurements of the cyanogen (CN) band Β(2)Σ(+)--Χ(2)Σ(+), (Δυ = 0) at 388.3 nm and the ratio of the atomic lines of hydrogen (Hα) and oxygen (O(I)), Hα/O. The combination of these LIBS-based methods provides a relatively simple to use, rapid, and accurate tool for online and in situ combustion diagnostics, providing valuable information about the fuel distribution and the spatial variations of the local structures of a flame. © The Author(s) 2016.

  6. Structured Additive Quantile Regression for Assessing the Determinants of Childhood Anemia in Rwanda

    Directory of Open Access Journals (Sweden)

    Faustin Habyarimana

    2017-06-01

    Full Text Available Childhood anemia is among the most significant health problems faced by public health departments in developing countries. This study aims at assessing the determinants and possible spatial effects associated with childhood anemia in Rwanda. The 2014/2015 Rwanda Demographic and Health Survey (RDHS data was used. The analysis was done using the structured spatial additive quantile regression model. The findings of this study revealed that the child’s age; the duration of breastfeeding; gender of the child; the nutritional status of the child (whether underweight and/or wasting; whether the child had a fever; had a cough in the two weeks prior to the survey or not; whether the child received vitamin A supplementation in the six weeks before the survey or not; the household wealth index; literacy of the mother; mother’s anemia status; mother’s age at the birth are all significant factors associated with childhood anemia in Rwanda. Furthermore, significant structured spatial location effects on childhood anemia was found.

  7. On Spatial Resolution in Habitat Models: Can Small-scale Forest Structure Explain Capercaillie Numbers?

    Directory of Open Access Journals (Sweden)

    Ilse Storch

    2002-06-01

    Full Text Available This paper explores the effects of spatial resolution on the performance and applicability of habitat models in wildlife management and conservation. A Habitat Suitability Index (HSI model for the Capercaillie (Tetrao urogallus in the Bavarian Alps, Germany, is presented. The model was exclusively built on non-spatial, small-scale variables of forest structure and without any consideration of landscape patterns. The main goal was to assess whether a HSI model developed from small-scale habitat preferences can explain differences in population abundance at larger scales. To validate the model, habitat variables and indirect sign of Capercaillie use (such as feathers or feces were mapped in six study areas based on a total of 2901 20 m radius (for habitat variables and 5 m radius sample plots (for Capercaillie sign. First, the model's representation of Capercaillie habitat preferences was assessed. Habitat selection, as expressed by Ivlev's electivity index, was closely related to HSI scores, increased from poor to excellent habitat suitability, and was consistent across all study areas. Then, habitat use was related to HSI scores at different spatial scales. Capercaillie use was best predicted from HSI scores at the small scale. Lowering the spatial resolution of the model stepwise to 36-ha, 100-ha, 400-ha, and 2000-ha areas and relating Capercaillie use to aggregated HSI scores resulted in a deterioration of fit at larger scales. Most importantly, there were pronounced differences in Capercaillie abundance at the scale of study areas, which could not be explained by the HSI model. The results illustrate that even if a habitat model correctly reflects a species' smaller scale habitat preferences, its potential to predict population abundance at larger scales may remain limited.

  8. Experimental determination of the structure of H3+

    International Nuclear Information System (INIS)

    Gaillard, M.J.; Gemmell, D.S.; Goldring, G.; Levine, I.; Pietsch, W.J.; Poizat, J.C.; Ratkowski, A.J.; Remillieux, J.; Vager, Z.; Zabransky, B.J.

    1978-01-01

    Three different measurements on the structure of the H 3 + molecular ion are reported. The measurements all make use of a new technique: the foil-induced dissociation of a fast molecular-ion beam. It is shown that the structure is equilaterally triangular in shape. The most probable length of side of the triangle is determined by the three measurements to be 0.97 +- 0.03 A, 0.95 +- 0.06 A, and 1.2 +- 0.2 A, respectively

  9. Sulfated oligosaccharide structures, as determined by NMR techniques

    Energy Technology Data Exchange (ETDEWEB)

    Noseda, M.D.; Duarte, M.E.R.; Tischer, C.A.; Gorin, P.A.J. [Parana Univ., Curitiba, PR (Brazil). Dept. De Bioquimica; Cerezo, A.S. [Buenos Aires Univ. Nacional (Argentina). Dept. de Quimica Organica

    1997-12-31

    Carrageenans are sulfated polysaccharides, produced by red seaweeds (Rhodophyta), that have important biological and physico-chemical properties. Using partial autohydrolysis, we obtained sulfated oligosaccharides from a {lambda}-carrageenan (Noseda and Cerezo, 1993). These oligosaccharides are valuable not only for the study of the structures of the parent carrageenans but also for their possible biological activities. In this work we determined the chemical structure of one of the sulfated oligosaccharides using 1D and 2D NMR techniques. (author) 4 refs., 8 figs., 1 tabs.

  10. Taking MAD to the extreme: ultrafast protein structure determination

    International Nuclear Information System (INIS)

    Walsh, M.A.; Dementieva, I.; Evans, G.; Sanishvili, R.; Joachimiak, A.

    1999-01-01

    Multiwavelength anomalous diffraction data were measured in 23 min from a 16 kDa selenomethionyl-substituted protein, producing experimental phases to 2.25 (angstrom) resolution. The data were collected on a mosaic 3 x 3 charge-coupled device using undulator radiation from the Structural Biology Center 19ID beamline at the Argonne National Laboratory's Advanced Photon Source. The phases were independently obtained semiautomatically by two crystallographic program suites, CCP4 and CNS. The quality and speed of this data acquisition exemplify the opportunities at third-generation synchrotron sources for high-throughput protein crystal structure determination

  11. Implantation measurements to determine tritium permeation in first wall structures

    International Nuclear Information System (INIS)

    Holland, D.F.; Causey, R.A.

    1983-01-01

    A principal safety concern for a D-T burning fusion reactor is release of tritium during routine operation. Tritium implantation into first wall structures, and subsequent permeation into coolants, is potentially an important source of tritium loss. This paper reports on an experiment in which an ion accelerator was used to implant deuterium atoms in a stainless steel disk to simulate tritium implantation in first wall structures. The permeation rate was measured under various operating conditions. These results were used in the TMAP computer code to determine potential tritium loss rates for fusion reactors

  12. DETERMINANT FACTORS OF THE CAPITAL STRUCTURE OF BRAZILIAN TECHNOLOGY COMPANIES

    Directory of Open Access Journals (Sweden)

    Camila Freitas Sant´Ana

    2015-12-01

    Full Text Available The purpose of this study is to identify determinant factors of the capital structure of Brazilian technology companies. The research was characterized as descriptive, document and quantitative, consisting of 21 companies in the communications, telecommunications and digital industry, according to the Exame magazine ranking. The analysis was established from 2009 to 2013 using panel data regression. The results indicate that the growth rate of capital and control type have a positive relationship with the general and long-term debt. However, it was found that company size, profitability and type of capital point to a negative relationship with the capital structure.

  13. Spatial correlation structure of the ionosphere predicted by geomagnetic indices and application to global field modelling

    Science.gov (United States)

    Holschneider, M.; Ferrat, K.; Lesur, V.; Stolle, C.

    2017-12-01

    Ionospheric fields are modelled in terms of random structures taking into account a mean behaviour as well as random fluctuations which are described through two point correlation kernels. These kernels are estimated from long time series of numerical simulations from various models. These correlations are best expressed in SM system of coordinates. For the moment we limit ourselves to spatial correlations only in this coordinate system. We study the influence of various indices as possible predictor parameters for these correlations as well as seasonal effects. The various time series of ionospheric fields are stored in a HDF5 database which is accessible via a web interface. The obtained correlation structures serve as prior information to separate external and internal field components from observatory based measurements. We present a model that predicts the correlations as a function of time and some geomagnetic indices. First results of the inversion from observatory data are presented.

  14. Population structure, spatial distribution and life-history traits of blacktip reef sharks Carcharhinus melanopterus.

    Science.gov (United States)

    Mourier, J; Mills, S C; Planes, S

    2013-03-01

    During a survey of the population of blacktip reef shark Carcharhinus melanopterus in Moorea (French Polynesia) between 2007 and 2011, population structural characteristics were estimated from 268 individuals. Total length (LT ) ranged from 48 to 139 cm and 48 to 157 cm for males and females, respectively, demonstrating that the average LT of females was larger than that of males. The C. melanopterus population at Moorea showed an apparent spatial sexual segregation with females preferentially frequenting lagoons and males the fore-reefs. Mean growth rate was c. 6 cm year(-1) . Males reached sexual maturity at 111 cm LT . This study reports on the population characteristics of this widespread carcharhinid shark species and makes comparisons with other locations, confirming high geographic variability in the population structure of the species. © 2013 The Authors. Journal of Fish Biology © 2013 The Fisheries Society of the British Isles.

  15. Spatial Factors Play a Major Role as Determinants of Endemic Ground Beetle Beta Diversity of Madeira Island Laurisilva

    Science.gov (United States)

    Boieiro, Mário; Carvalho, José C.; Cardoso, Pedro; Aguiar, Carlos A. S.; Rego, Carla; de Faria e Silva, Israel; Amorim, Isabel R.; Pereira, Fernando; Azevedo, Eduardo B.; Borges, Paulo A. V.; Serrano, Artur R. M.

    2013-01-01

    The development in recent years of new beta diversity analytical approaches highlighted valuable information on the different processes structuring ecological communities. A crucial development for the understanding of beta diversity patterns was also its differentiation in two components: species turnover and richness differences. In this study, we evaluate beta diversity patterns of ground beetles from 26 sites in Madeira Island distributed throughout Laurisilva – a relict forest restricted to the Macaronesian archipelagos. We assess how the two components of ground beetle beta diversity (βrepl – species turnover and βrich - species richness differences) relate with differences in climate, geography, landscape composition matrix, woody plant species richness and soil characteristics and the relative importance of the effects of these variables at different spatial scales. We sampled 1025 specimens from 31 species, most of which are endemic to Madeira Island. A spatially explicit analysis was used to evaluate the contribution of pure environmental, pure spatial and environmental spatially structured effects on variation in ground beetle species richness and composition. Variation partitioning showed that 31.9% of species turnover (βrepl) and 40.7% of species richness variation (βrich) could be explained by the environmental and spatial variables. However, different environmental variables controlled the two types of beta diversity: βrepl was influenced by climate, disturbance and soil organic matter content whilst βrich was controlled by altitude and slope. Furthermore, spatial variables, represented through Moran’s eigenvector maps, played a significant role in explaining both βrepl and βrich, suggesting that both dispersal ability and Madeira Island complex orography are crucial for the understanding of beta diversity patterns in this group of beetles. PMID:23724065

  16. Shade tree spatial structure and pod production explain frosty pod rot intensity in cacao agroforests, Costa Rica.

    Science.gov (United States)

    Gidoin, Cynthia; Avelino, Jacques; Deheuvels, Olivier; Cilas, Christian; Bieng, Marie Ange Ngo

    2014-03-01

    Vegetation composition and plant spatial structure affect disease intensity through resource and microclimatic variation effects. The aim of this study was to evaluate the independent effect and relative importance of host composition and plant spatial structure variables in explaining disease intensity at the plot scale. For that purpose, frosty pod rot intensity, a disease caused by Moniliophthora roreri on cacao pods, was monitored in 36 cacao agroforests in Costa Rica in order to assess the vegetation composition and spatial structure variables conducive to the disease. Hierarchical partitioning was used to identify the most causal factors. Firstly, pod production, cacao tree density and shade tree spatial structure had significant independent effects on disease intensity. In our case study, the amount of susceptible tissue was the most relevant host composition variable for explaining disease intensity by resource dilution. Indeed, cacao tree density probably affected disease intensity more by the creation of self-shading rather than by host dilution. Lastly, only regularly distributed forest trees, and not aggregated or randomly distributed forest trees, reduced disease intensity in comparison to plots with a low forest tree density. A regular spatial structure is probably crucial to the creation of moderate and uniform shade as recommended for frosty pod rot management. As pod production is an important service expected from these agroforests, shade tree spatial structure may be a lever for integrated management of frosty pod rot in cacao agroforests.

  17. Phage-Bacterial Dynamics with Spatial Structure: Self Organization around Phage Sinks Can Promote Increased Cell Densities.

    Science.gov (United States)

    Bull, James J; Christensen, Kelly A; Scott, Carly; Jack, Benjamin R; Crandall, Cameron J; Krone, Stephen M

    2018-01-29

    Bacteria growing on surfaces appear to be profoundly more resistant to control by lytic bacteriophages than do the same cells grown in liquid. Here, we use simulation models to investigate whether spatial structure per se can account for this increased cell density in the presence of phages. A measure is derived for comparing cell densities between growth in spatially structured environments versus well mixed environments (known as mass action). Maintenance of sensitive cells requires some form of phage death; we invoke death mechanisms that are spatially fixed, as if produced by cells. Spatially structured phage death provides cells with a means of protection that can boost cell densities an order of magnitude above that attained under mass action, although the effect is sometimes in the opposite direction. Phage and bacteria self organize into separate refuges, and spatial structure operates so that the phage progeny from a single burst do not have independent fates (as they do with mass action). Phage incur a high loss when invading protected areas that have high cell densities, resulting in greater protection for the cells. By the same metric, mass action dynamics either show no sustained bacterial elevation or oscillate between states of low and high cell densities and an elevated average. The elevated cell densities observed in models with spatial structure do not approach the empirically observed increased density of cells in structured environments with phages (which can be many orders of magnitude), so the empirical phenomenon likely requires additional mechanisms than those analyzed here.

  18. Hemoglobin concentration determination based on near infrared spatially resolved transmission spectra

    Science.gov (United States)

    Zhang, Linna; Li, Gang; Lin, Ling

    2016-10-01

    Spatially resolved diffuse reflectance spectroscopy method has been proved to be more effective than single point spectroscopy method in the experiment to predict the concentration of the Intralipid diluted solutions. However, Intralipid diluted solution is simple, cannot be the representative of turbid liquids. Blood is a natural and meaningful turbid liquid, more complicate. Hemoglobin is the major constituent of the whole blood. And hemoglobin concentration is commonly used in clinical medicine to diagnose many diseases. In this paper, near infrared spatially resolved transmission spectra (NIRSRTS) and Partial Least Square Regression (PLSR) were used to predict the hemoglobin concentration of human blood. The results showed the prediction ability for hemoglobin concentration of the proposed method is better than single point transmission spectroscopy method. This paper demonstrated the feasibility of the spatially resolved diffuse reflectance spectroscopy method for practical liquid composition analysis. This research provided a new thinking of practical turbid liquid composition analysis.

  19. Asymmetric segregation of damaged cellular components in spatially structured multicellular organisms.

    Directory of Open Access Journals (Sweden)

    Charlotte Strandkvist

    Full Text Available The asymmetric distribution of damaged cellular components has been observed in species ranging from fission yeast to humans. To study the potential advantages of damage segregation, we have developed a mathematical model describing ageing mammalian tissue, that is, a multicellular system of somatic cells that do not rejuvenate at cell division. To illustrate the applicability of the model, we specifically consider damage incurred by mutations to mitochondrial DNA, which are thought to be implicated in the mammalian ageing process. We show analytically that the asymmetric distribution of damaged cellular components reduces the overall damage level and increases the longevity of the cell population. Motivated by the experimental reports of damage segregation in human embryonic stem cells, dividing symmetrically with respect to cell-fate, we extend the model to consider spatially structured systems of cells. Imposing spatial structure reduces, but does not eliminate, the advantage of asymmetric division over symmetric division. The results suggest that damage partitioning could be a common strategy for reducing the accumulation of damage in a wider range of cell types than previously thought.

  20. A selfsimilar behavior of the urban structure in the spatially inhomogeneous model

    Science.gov (United States)

    Echkina, E. Y.; Inovenkov, O. I.; Kostomarov, D. P.

    2006-03-01

    At present there is a strong tendency to use new methods for the description of the regional and spatial economy. In increasing frequency we consider that any economic activity is spatially dependent. The problem of the evolution of internal urban formation can be described with the exact supposition. So that is why we use partial derivative equations set with the appropriate boundary and initial conditions for the solving the problem of the urban evolution. Here we describe the model of urban population's density modification taking into account a modification of the housing quality. A program has been created which realizes difference method of mixed problem solution for population's density. For the wide class of coefficients it has been shown that the problem's solution “quickly forgets” the parts of the initial conditions and comes out to the intermediate asymptotic form, which nature depends only on the problem's operator. Actually it means that the urban structure does not depend on external circumstances and is formed by the internal structure of the model.

  1. Temporal and spatial influences incur reconfiguration of Arctic heathland soil bacterial community structure.

    Science.gov (United States)

    Hill, Richard; Saetnan, Eli R; Scullion, John; Gwynn-Jones, Dylan; Ostle, Nick; Edwards, Arwyn

    2016-06-01

    Microbial responses to Arctic climate change could radically alter the stability of major stores of soil carbon. However, the sensitivity of plot-scale experiments simulating climate change effects on Arctic heathland soils to potential confounding effects of spatial and temporal changes in soil microbial communities is unknown. Here, the variation in heathland soil bacterial communities at two survey sites in Sweden between spring and summer 2013 and at scales between 0-1 m and, 1-100 m and between sites (> 100 m) were investigated in parallel using 16S rRNA gene T-RFLP and amplicon sequencing. T-RFLP did not reveal spatial structuring of communities at scales structuring effects may not confound comparison between plot-scale treatments, temporal change is a significant influence. Moreover, the prominence of two temporally exclusive keystone taxa suggests that the stability of Arctic heathland soil bacterial communities could be disproportionally influenced by seasonal perturbations affecting individual taxa. © 2015 Society for Applied Microbiology and John Wiley & Sons Ltd.

  2. Temporal and spatial scaling of the genetic structure of a vector-borne plant pathogen.

    Science.gov (United States)

    Coletta-Filho, Helvécio D; Francisco, Carolina S; Almeida, Rodrigo P P

    2014-02-01

    The ecology of plant pathogens of perennial crops is affected by the long-lived nature of their immobile hosts. In addition, changes to the genetic structure of pathogen populations may affect disease epidemiology and management practices; examples include local adaptation of more fit genotypes or introduction of novel genotypes from geographically distant areas via human movement of infected plant material or insect vectors. We studied the genetic structure of Xylella fastidiosa populations causing disease in sweet orange plants in Brazil at multiple scales using fast-evolving molecular markers (simple-sequence DNA repeats). Results show that populations of X. fastidiosa were regionally isolated, and that isolation was maintained for populations analyzed a decade apart from each other. However, despite such geographic isolation, local populations present in year 2000 were largely replaced by novel genotypes in 2009 but not as a result of migration. At a smaller spatial scale (individual trees), results suggest that isolates within plants originated from a shared common ancestor. In summary, new insights on the ecology of this economically important plant pathogen were obtained by sampling populations at different spatial scales and two different time points.

  3. Phylogeographic analysis reveals significant spatial genetic structure of Incarvillea sinensis as a product of mountain building

    Directory of Open Access Journals (Sweden)

    Chen Shaotian

    2012-04-01

    Full Text Available Abstract Background Incarvillea sinensis is widely distributed from Southwest China to Northeast China and in the Russian Far East. The distribution of this species was thought to be influenced by the uplift of the Qinghai-Tibet Plateau and Quaternary glaciation. To reveal the imprints of geological events on the spatial genetic structure of Incarvillea sinensis, we examined two cpDNA segments ( trnH- psbA and trnS- trnfM in 705 individuals from 47 localities. Results A total of 16 haplotypes was identified, and significant genetic differentiation was revealed (GST =0.843, NST = 0.975, P  Conclusions The results revealed that the uplift of the Qinghai-Tibet Plateau likely resulted in the significant divergence between the lineage in the eastern Qinghai-Tibet Plateau and the other one outside this area. The diverse niches in the eastern Qinghai-Tibet Plateau created a wide spectrum of habitats to accumulate and accommodate new mutations. The features of genetic diversity of populations outside the eastern Qinghai-Tibet Plateau seemed to reveal the imprints of extinction during the Glacial and the interglacial and postglacial recolonization. Our study is a typical case of the significance of the uplift of the Qinghai-Tibet Plateau and the Quaternary Glacial in spatial genetic structure of eastern Asian plants, and sheds new light on the evolution of biodiversity in the Qinghai-Tibet Plateau at the intraspecies level.

  4. Spatial organization and correlation properties quantify structural changes on mesoscale of parenchymatous plant tissue

    Energy Technology Data Exchange (ETDEWEB)

    Valous, N. A.; Delgado, A.; Sun, D.-W., E-mail: dawen.sun@ucd.ie [School of Biosystems Engineering, University College Dublin, National University of Ireland, Belfield, Dublin 4, Dublin (Ireland); Drakakis, K. [Complex and Adaptive Systems Laboratory, University College Dublin, National University of Ireland, Belfield, Dublin 4, Dublin (Ireland)

    2014-02-14

    The study of plant tissue parenchyma's intercellular air spaces contributes to the understanding of anatomy and physiology. This is challenging due to difficulty in making direct measurements of the pore space and the complex mosaic of parenchymatous tissue. The architectural complexity of pore space has shown that single geometrical measurements are not sufficient for characterization. The inhomogeneity of distribution depends not only on the percentage content of phase, but also on how the phase fills the space. The lacunarity morphometric, as multiscale measure, provides information about the distribution of gaps that correspond to degree of spatial organization in parenchyma. Additionally, modern theories have suggested strategies, where the focus has shifted from the study of averages and histograms to the study of patterns in data fluctuations. Detrended fluctuation analysis provides information on the correlation properties of the parenchyma at different spatial scales. The aim is to quantify (with the aid of the aforementioned metrics), the mesostructural changes—that occur from one cycle of freezing and thawing—in the void phase of pome fruit parenchymatous tissue, acquired with X-ray microcomputed tomography. Complex systems methods provide numerical indices and detailed insights regarding the freezing-induced modifications upon the arrangement of cells and voids. These structural changes have the potential to lead to physiological disorders. The work can further stimulate interest for the analysis of internal plant tissue structures coupled with other physico-chemical processes or phenomena.

  5. Spatial organization and correlation properties quantify structural changes on mesoscale of parenchymatous plant tissue

    International Nuclear Information System (INIS)

    Valous, N. A.; Delgado, A.; Sun, D.-W.; Drakakis, K.

    2014-01-01

    The study of plant tissue parenchyma's intercellular air spaces contributes to the understanding of anatomy and physiology. This is challenging due to difficulty in making direct measurements of the pore space and the complex mosaic of parenchymatous tissue. The architectural complexity of pore space has shown that single geometrical measurements are not sufficient for characterization. The inhomogeneity of distribution depends not only on the percentage content of phase, but also on how the phase fills the space. The lacunarity morphometric, as multiscale measure, provides information about the distribution of gaps that correspond to degree of spatial organization in parenchyma. Additionally, modern theories have suggested strategies, where the focus has shifted from the study of averages and histograms to the study of patterns in data fluctuations. Detrended fluctuation analysis provides information on the correlation properties of the parenchyma at different spatial scales. The aim is to quantify (with the aid of the aforementioned metrics), the mesostructural changes—that occur from one cycle of freezing and thawing—in the void phase of pome fruit parenchymatous tissue, acquired with X-ray microcomputed tomography. Complex systems methods provide numerical indices and detailed insights regarding the freezing-induced modifications upon the arrangement of cells and voids. These structural changes have the potential to lead to physiological disorders. The work can further stimulate interest for the analysis of internal plant tissue structures coupled with other physico-chemical processes or phenomena

  6. GISAXS and SAXS studies on the spatial structures of Co nanowire arrays

    International Nuclear Information System (INIS)

    Cheng Weidong; Xing Xueqing; Wang Dehong; Gong Yu; Mo Guang; Cai Quan; Chen Zhongjun; Wu Zhonghua

    2011-01-01

    The spatial structures of magnetic Co nanowire array embedded in anodic aluminium membranes were investigated by grazing incidence small angle X-ray scattering (GISAXS) and conventional small angle X-ray scattering (SAXS) techniques. Compared with SEM observation, the GISAXS and SAXS measurements can get more overall structural information in a large-area scale. In this study, the two-dimensional GISAXS pattern was well reconstructed by using the IsGISAXS program. The results demonstrate that the hexagonal lattice formed by the Co nanowires is distorted (a≈105 nm, b≈95 nm). These Co nanowires are isolated into many structure domains with different orientations with a size of about 2 μm. The SAXS results have also confirmed that the nanopore structures in the AAM can be retained after depositing Co nanowires although the Co nanowires can not completely but only just fill up the nanopores. These results are helpful for understanding the global structure of the Co nanowire array. (authors)

  7. Determinants of spatial distribution in a bee community: nesting resources, flower resources, and body size.

    Science.gov (United States)

    Torné-Noguera, Anna; Rodrigo, Anselm; Arnan, Xavier; Osorio, Sergio; Barril-Graells, Helena; da Rocha-Filho, Léo Correia; Bosch, Jordi

    2014-01-01

    Understanding biodiversity distribution is a primary goal of community ecology. At a landscape scale, bee communities are affected by habitat composition, anthropogenic land use, and fragmentation. However, little information is available on local-scale spatial distribution of bee communities within habitats that are uniform at the landscape scale. We studied a bee community along with floral and nesting resources over a 32 km2 area of uninterrupted Mediterranean scrubland. Our objectives were (i) to analyze floral and nesting resource composition at the habitat scale. We ask whether these resources follow a geographical pattern across the scrubland at bee-foraging relevant distances; (ii) to analyze the distribution of bee composition across the scrubland. Bees being highly mobile organisms, we ask whether bee composition shows a homogeneous distribution or else varies spatially. If so, we ask whether this variation is irregular or follows a geographical pattern and whether bees respond primarily to flower or to nesting resources; and (iii) to establish whether body size influences the response to local resource availability and ultimately spatial distribution. We obtained 6580 specimens belonging to 98 species. Despite bee mobility and the absence of environmental barriers, our bee community shows a clear geographical pattern. This pattern is mostly attributable to heterogeneous distribution of small (<55 mg) species (with presumed smaller foraging ranges), and is mostly explained by flower resources rather than nesting substrates. Even then, a large proportion (54.8%) of spatial variability remains unexplained by flower or nesting resources. We conclude that bee communities are strongly conditioned by local effects and may exhibit spatial heterogeneity patterns at a scale as low as 500-1000 m in patches of homogeneous habitat. These results have important implications for local pollination dynamics and spatial variation of plant-pollinator networks.

  8. Determinants of spatial distribution in a bee community: nesting resources, flower resources, and body size.

    Directory of Open Access Journals (Sweden)

    Anna Torné-Noguera

    Full Text Available Understanding biodiversity distribution is a primary goal of community ecology. At a landscape scale, bee communities are affected by habitat composition, anthropogenic land use, and fragmentation. However, little information is available on local-scale spatial distribution of bee communities within habitats that are uniform at the landscape scale. We studied a bee community along with floral and nesting resources over a 32 km2 area of uninterrupted Mediterranean scrubland. Our objectives were (i to analyze floral and nesting resource composition at the habitat scale. We ask whether these resources follow a geographical pattern across the scrubland at bee-foraging relevant distances; (ii to analyze the distribution of bee composition across the scrubland. Bees being highly mobile organisms, we ask whether bee composition shows a homogeneous distribution or else varies spatially. If so, we ask whether this variation is irregular or follows a geographical pattern and whether bees respond primarily to flower or to nesting resources; and (iii to establish whether body size influences the response to local resource availability and ultimately spatial distribution. We obtained 6580 specimens belonging to 98 species. Despite bee mobility and the absence of environmental barriers, our bee community shows a clear geographical pattern. This pattern is mostly attributable to heterogeneous distribution of small (<55 mg species (with presumed smaller foraging ranges, and is mostly explained by flower resources rather than nesting substrates. Even then, a large proportion (54.8% of spatial variability remains unexplained by flower or nesting resources. We conclude that bee communities are strongly conditioned by local effects and may exhibit spatial heterogeneity patterns at a scale as low as 500-1000 m in patches of homogeneous habitat. These results have important implications for local pollination dynamics and spatial variation of plant-pollinator networks.

  9. Determinants of Spatial Distribution in a Bee Community: Nesting Resources, Flower Resources, and Body Size

    Science.gov (United States)

    Torné-Noguera, Anna; Rodrigo, Anselm; Arnan, Xavier; Osorio, Sergio; Barril-Graells, Helena; da Rocha-Filho, Léo Correia; Bosch, Jordi

    2014-01-01

    Understanding biodiversity distribution is a primary goal of community ecology. At a landscape scale, bee communities are affected by habitat composition, anthropogenic land use, and fragmentation. However, little information is available on local-scale spatial distribution of bee communities within habitats that are uniform at the landscape scale. We studied a bee community along with floral and nesting resources over a 32 km2 area of uninterrupted Mediterranean scrubland. Our objectives were (i) to analyze floral and nesting resource composition at the habitat scale. We ask whether these resources follow a geographical pattern across the scrubland at bee-foraging relevant distances; (ii) to analyze the distribution of bee composition across the scrubland. Bees being highly mobile organisms, we ask whether bee composition shows a homogeneous distribution or else varies spatially. If so, we ask whether this variation is irregular or follows a geographical pattern and whether bees respond primarily to flower or to nesting resources; and (iii) to establish whether body size influences the response to local resource availability and ultimately spatial distribution. We obtained 6580 specimens belonging to 98 species. Despite bee mobility and the absence of environmental barriers, our bee community shows a clear geographical pattern. This pattern is mostly attributable to heterogeneous distribution of small (nesting substrates. Even then, a large proportion (54.8%) of spatial variability remains unexplained by flower or nesting resources. We conclude that bee communities are strongly conditioned by local effects and may exhibit spatial heterogeneity patterns at a scale as low as 500–1000 m in patches of homogeneous habitat. These results have important implications for local pollination dynamics and spatial variation of plant-pollinator networks. PMID:24824445

  10. The potential for biological structure determination with pulsed neutrons

    Energy Technology Data Exchange (ETDEWEB)

    Wilson, C.C. [CLRC Rutherford Appleton Laboratory, Chilton Didcot Oxon (United Kingdom)

    1994-12-31

    The potential of pulsed neutron diffraction in structural determination of biological materials is discussed. The problems and potential solutions in this area are outlined, with reference to both current and future sources and instrumentation. The importance of developing instrumentation on pulsed sources in emphasized, with reference to the likelihood of future expansion in this area. The possibilities and limitations of single crystal, fiber and powder diffraction in this area are assessed.

  11. The potential for biological structure determination with pulsed neutrons

    International Nuclear Information System (INIS)

    Wilson, C.C.

    1994-01-01

    The potential of pulsed neutron diffraction in structural determination of biological materials is discussed. The problems and potential solutions in this area are outlined, with reference to both current and future sources and instrumentation. The importance of developing instrumentation on pulsed sources in emphasized, with reference to the likelihood of future expansion in this area. The possibilities and limitations of single crystal, fiber and powder diffraction in this area are assessed

  12. Determining the helicity structure of third generation resonances

    International Nuclear Information System (INIS)

    Papaefstathiou, Andreas

    2011-11-01

    We examine methods that have been proposed for determining the helicity structure of decays of new resonances to third generation quarks and/or leptons. We present analytical and semi-analytical predictions and assess the applicability of the relevant variables in realistic reconstruction scenarios using Monte Carlo-generated events, including the effects of QCD radiation and multiple parton interactions, combinatoric ambiguities and fast detector simulation. (orig.)

  13. Determination of the Basin Structure Beneath European Side of Istanbul

    Science.gov (United States)

    Karabulut, Savas; Cengiz Cinku, Mulla; Thomas, Michael; Lamontagne, Maurice

    2016-04-01

    Istanbul (near North Anatolian Fault Zone:NAFZ, Turkey) is located in northern part of Sea of Marmara, an area that has been influenced by possible Marmara Earthquakes. The general geology of Istanbul divided into two stratigraphic unit such as sedimentary (from Oligocene to Quaternary Deposits) and bedrock (Paleozoic and Eocene). The bedrock units consists of sand stone, clay stone to Paleozoic age and limestone to Eocene age and sedimentary unit consist of sand, clay, mil and gravel from Oligocene to Quaternary age. Earthquake disaster mitigation studies divided into two important phases, too. Firstly, earthquake, soil and engineering structure problems identify for investigation area, later on strategic emergency plan can prepare for these problems. Soil amplification play important role the disaster mitigation and the site effect analysis and basin structure is also a key parameter for determining of site effect. Some geophysical, geological and geotechnical measurements are requeired to defined this relationship. Istanbul Megacity has been waiting possible Marmara Earthquake and their related results. In order to defined to possible damage potential related to site effect, gravity measurements carried out for determining to geological structure, basin geometry and faults in Istanbul. Gravity data were collected at 640 sites by using a Scientrex CG-5 Autogravity meter Standard corrections applied to the gravity data include those for instrumental drift, Earth tides and latitude, and the free-air and Bouguer corrections. The corrected gravity data were imported into a Geosoft database to create a grid and map of the Bouguer gravity anomaly (grid cell size of 200 m). As a previously results, we determined some lineminants, faults and basins beneath Istanbul City. Especially, orientation of faults were NW-SE direction and some basin structures determined on between Buyukcekmece and Kucukcekmece Lake.

  14. MOTIVATION INTERNALIZATION AND SIMPLEX STRUCTURE IN SELF-DETERMINATION THEORY.

    Science.gov (United States)

    Ünlü, Ali; Dettweiler, Ulrich

    2015-12-01

    Self-determination theory, as proposed by Deci and Ryan, postulated different types of motivation regulation. As to the introjected and identified regulation of extrinsic motivation, their internalizations were described as "somewhat external" and "somewhat internal" and remained undetermined in the theory. This paper introduces a constrained regression analysis that allows these vaguely expressed motivations to be estimated in an "optimal" manner, in any given empirical context. The approach was even generalized and applied for simplex structure analysis in self-determination theory. The technique was exemplified with an empirical study comparing science teaching in a classical school class versus an expeditionary outdoor program. Based on a sample of 84 German pupils (43 girls, 41 boys, 10 to 12 years old), data were collected using the German version of the Academic Self-Regulation Questionnaire. The science-teaching format was seen to not influence the pupils' internalization of identified regulation. The internalization of introjected regulation differed and shifted more toward the external pole in the outdoor teaching format. The quantification approach supported the simplex structure of self-determination theory, whereas correlations may disconfirm the simplex structure.

  15. Determinants of capital structure: evidence from the Czech automotive industry

    Directory of Open Access Journals (Sweden)

    Pavlína Pinková

    2012-01-01

    Full Text Available The objective of the paper is to identify the determinants influencing the capital structure of large and medium-sized enterprises of the automotive industry in the Czech Republic. The sample consists of 100 companies belonging to NACE division 29. The data come from financial statements of selected companies and cover a period from 2006 to 2010. For the purpose of the paper quantitative research is used. The selection of appropriate dependent and independent is realized on the basis of secondary research on studies of capital structure. The analysis of variance, correlation and regression analyses have been performed to see the nature of relationship between variables. Size, tangibility, profitability and liquidity appear to be relevant determinants of capital structure. Growth is not a statistically significant determinant of leverage. It has been observed that the maturity of debt has to be considered, since the investigation of total debt only does not provide precious results. The findings do not unequivocally support either the static trade-off theory or the pecking order theory.

  16. Local magnetic structure determination using polarized neutron holography

    International Nuclear Information System (INIS)

    Szakál, Alex; Markó, Márton; Cser, László

    2015-01-01

    A unique and important property of the neutron is that it possesses magnetic moment. This property is widely used for determination of magnetic structure of crystalline samples observing the magnetic components of the diffraction peaks. Investigations of diffraction patterns give information only about the averaged structure of a crystal but for discovering of local spin arrangement around a specific (e.g., impurity) nucleus remains still a challenging problem. Neutron holography is a useful tool to investigate the local structure around a specific nucleus embedded in a crystal lattice. The method has been successfully applied experimentally in several cases using non-magnetic short range interaction of the neutron and the nucleus. A mathematical model of the hologram using interaction between magnetic moment of the atom and the neutron spin for polarized neutron holography is provided. Validity of a polarized neutron holographic experiment is demonstrated by applying the proposed method on model systems

  17. Spatial Relationships between Deep-focus Earthquakes and Structural Heterogeneities within the Subducting Slabs of the Western Pacific Subduction Zones

    Science.gov (United States)

    Chen, M.; Kiser, E.; Niu, F.

    2016-12-01

    The nature of deep-focus earthquakes with depths greater than 300 km has long been controversial. Mechanisms that may promote brittle deformation at such depths include dehydration embrittlement, phase transformational faulting, and thermal runaway instabilities. Of these, the most commonly referenced mechanism—phase transformational faulting—involves the breakdown of metastable olivine within the core of a cold subducting slab. Seismic observations of the metastable olivine wedge, as well as its spatial relationship to deep-focus seismicity, are limited. Classical 1-D ray-theory based tomography images indicate that deep-focus hypocenters coincide with the highest wave speed anomalies within the slab, traditionally viewed as the slab's cold core. However, our latest full waveform tomography images of the Kuril, Japan, and Izu-Bonin slabs show systematically deep-focus earthquakes located near the top of high wave speed regions, with hypocentral or centroid locations determined by EHB, global CMT, or JMA. In order to reduce location bias in global CMT solutions due to unmodeled 3-D structure, we relocate tens of deep-focus earthquakes within the new 3-D structural model based on a full wavefield modeling code SPECFEM3D_GLOBE, with seismic waves simulated to the shortest period of 9 seconds. We also determine the centroid locations of high-frequency energy (0.8 Hz-2 Hz) from back-projection results of several large earthquakes to understand how rupture propagates within the slab. The spatial correlations between the 3-D wave speed model and high-precision centroid locations from both long period and high frequency seismic waves further indicate that the deep-focus earthquakes occur and propagate near the top of the subducting slab. We will discuss the constraints that these relationships place on the mechanism of deep-focus earthquakes.

  18. DNA nanotubes for NMR structure determination of membrane proteins.

    Science.gov (United States)

    Bellot, Gaëtan; McClintock, Mark A; Chou, James J; Shih, William M

    2013-04-01

    Finding a way to determine the structures of integral membrane proteins using solution nuclear magnetic resonance (NMR) spectroscopy has proved to be challenging. A residual-dipolar-coupling-based refinement approach can be used to resolve the structure of membrane proteins up to 40 kDa in size, but to do this you need a weak-alignment medium that is detergent-resistant and it has thus far been difficult to obtain such a medium suitable for weak alignment of membrane proteins. We describe here a protocol for robust, large-scale synthesis of detergent-resistant DNA nanotubes that can be assembled into dilute liquid crystals for application as weak-alignment media in solution NMR structure determination of membrane proteins in detergent micelles. The DNA nanotubes are heterodimers of 400-nm-long six-helix bundles, each self-assembled from a M13-based p7308 scaffold strand and >170 short oligonucleotide staple strands. Compatibility with proteins bearing considerable positive charge as well as modulation of molecular alignment, toward collection of linearly independent restraints, can be introduced by reducing the negative charge of DNA nanotubes using counter ions and small DNA-binding molecules. This detergent-resistant liquid-crystal medium offers a number of properties conducive for membrane protein alignment, including high-yield production, thermal stability, buffer compatibility and structural programmability. Production of sufficient nanotubes for four or five NMR experiments can be completed in 1 week by a single individual.

  19. Structural determinants and mechanism of HIV-1 genome packaging.

    Science.gov (United States)

    Lu, Kun; Heng, Xiao; Summers, Michael F

    2011-07-22

    Like all retroviruses, the human immunodeficiency virus selectively packages two copies of its unspliced RNA genome, both of which are utilized for strand-transfer-mediated recombination during reverse transcription-a process that enables rapid evolution under environmental and chemotherapeutic pressures. The viral RNA appears to be selected for packaging as a dimer, and there is evidence that dimerization and packaging are mechanistically coupled. Both processes are mediated by interactions between the nucleocapsid domains of a small number of assembling viral Gag polyproteins and RNA elements within the 5'-untranslated region of the genome. A number of secondary structures have been predicted for regions of the genome that are responsible for packaging, and high-resolution structures have been determined for a few small RNA fragments and protein-RNA complexes. However, major questions regarding the RNA structures (and potentially the structural changes) that are responsible for dimeric genome selection remain unanswered. Here, we review efforts that have been made to identify the molecular determinants and mechanism of human immunodeficiency virus type 1 genome packaging. Copyright © 2011 Elsevier Ltd. All rights reserved.

  20. Airborne-Measured Spatially-Averaged Temperature and Moisture Turbulent Structure Parameters Over a Heterogeneous Surface

    Science.gov (United States)

    Platis, Andreas; Martinez, Daniel; Bange, Jens

    2014-05-01

    Turbulent structure parameters of temperature and humidity can be derived from scintillometer measurements along horizontal paths of several 100 m to several 10 km. These parameters can be very useful to estimate the vertical turbulent heat fluxes at the surface (applying MOST). However, there are many assumptions required by this method which can be checked using in situ data, e.g. 1) Were CT2 and CQ2 correctly derived from the initial CN2 scintillometer data (structure parameter of density fluctuations or refraction index, respectively)? 2) What is the influence of the surround hetereogeneous surface regarding its footprint and the weighted averaging effect of the scintillometer method 3) Does MOST provide the correct turbulent fluxes from scintillometer data. To check these issues, in situ data from low-level flight measurements are well suited, since research aircraft cover horizontal distances in very short time (Taylor's hypothesis of a frozen turbulence structure can be applyed very likely). From airborne-measured time series the spatial series are calculated and then their structure functions that finally provide the structure parameters. The influence of the heterogeneous surface can be controlled by the definition of certain moving-average window sizes. A very useful instrument for this task are UAVs since they can fly very low and maintain altitude very precisely. However, the data base of such unmanned operations is still quite thin. So in this contribution we want to present turbulence data obtained with the Helipod, a turbulence probe hanging below a manned helicopter. The structure parameters of temperature and moisture, CT2 and CQ2, in the lower convective boundary layer were derived from data measured using the Helipod in 2003. The measurements were carried out during the LITFASS03 campaign over a heterogeneous land surface around the boundary-layer field site of the Lindenberg Meteorological Observatory-Richard-Aßmann-Observatory (MOL) of the

  1. Spatial structure changes inside post-communist capital city of Bucharest

    Directory of Open Access Journals (Sweden)

    Gabriel Simion

    2012-05-01

    Full Text Available The paper focusses on the analyses of the recent development concerning post-socialist urban transformation of Bucharest, the Romanian country capital. The paper describes the spatial typology of metropolitan landscapes, and underlines the changes occurred inside the residential, commercial, services and industrial areas. The most noticeable occurrence is the urban sprawl and multiplication of the buildings and implicitly the diminishing of the agricultural area., It has been confirmed, at least theoretically, that spatial development of the largest cities determined a continuous decreasing of agriculture in the metropolitan area, landowners preferring selling or seeking to sell their land. The paper is empirically trying to argue the fact that post-socialist development of the land market in Bucharest metropolitan area determined a decline of agriculture in the city’s proximity. It is also showing that at increasing distance from the Bucharest city agriculture still has its importance as subsistence activity – in the south-eastern part, or as market oriented – in the south-western part or in the northern border.

  2. Seeing and Feeling for Self and Other: Proprioceptive Spatial Location Determines Multisensory Enhancement of Touch

    Science.gov (United States)

    Cardini, Flavia; Haggard, Patrick; Ladavas, Elisabetta

    2013-01-01

    We have investigated the relation between visuo-tactile interactions and the self-other distinction. In the Visual Enhancement of Touch (VET) effect, non-informative vision of one's own hand improves tactile spatial perception. Previous studies suggested that looking at "another"person's hand could also enhance tactile perception, but did not…

  3. Spatial patterns of agricultural expansion determine impacts on biodiversity and carbon storage.

    Science.gov (United States)

    Chaplin-Kramer, Rebecca; Sharp, Richard P; Mandle, Lisa; Sim, Sarah; Johnson, Justin; Butnar, Isabela; Milà I Canals, Llorenç; Eichelberger, Bradley A; Ramler, Ivan; Mueller, Carina; McLachlan, Nikolaus; Yousefi, Anahita; King, Henry; Kareiva, Peter M

    2015-06-16

    The agricultural expansion and intensification required to meet growing food and agri-based product demand present important challenges to future levels and management of biodiversity and ecosystem services. Influential actors such as corporations, governments, and multilateral organizations have made commitments to meeting future agricultural demand sustainably and preserving critical ecosystems. Current approaches to predicting the impacts of agricultural expansion involve calculation of total land conversion and assessment of the impacts on biodiversity or ecosystem services on a per-area basis, generally assuming a linear relationship between impact and land area. However, the impacts of continuing land development are often not linear and can vary considerably with spatial configuration. We demonstrate what could be gained by spatially explicit analysis of agricultural expansion at a large scale compared with the simple measure of total area converted, with a focus on the impacts on biodiversity and carbon storage. Using simple modeling approaches for two regions of Brazil, we find that for the same amount of land conversion, the declines in biodiversity and carbon storage can vary two- to fourfold depending on the spatial pattern of conversion. Impacts increase most rapidly in the earliest stages of agricultural expansion and are more pronounced in scenarios where conversion occurs in forest interiors compared with expansion into forests from their edges. This study reveals the importance of spatially explicit information in the assessment of land-use change impacts and for future land management and conservation.

  4. The contribution of spatial analysis to understanding HIV/TB mortality in children: a structural equation modelling approach

    Directory of Open Access Journals (Sweden)

    Eustasius Musenge

    2013-01-01

    Full Text Available Background: South Africa accounts for more than a sixth of the global population of people infected with HIV and TB, ranking her highest in HIV/TB co-infection worldwide. Remote areas often bear the greatest burden of morbidity and mortality, yet there are spatial differences within rural settings. Objectives: The primary aim was to investigate HIV/TB mortality determinants and their spatial distribution in the rural Agincourt sub-district for children aged 1–5 years in 2004. Our secondary aim was to model how the associated factors were interrelated as either underlying or proximate factors of child mortality using pathway analysis based on a Mosley-Chen conceptual framework. Methods: We conducted a secondary data analysis based on cross-sectional data collected in 2004 from the Agincourt sub-district in rural northeast South Africa. Child HIV/TB death was the outcome measure derived from physician assessed verbal autopsy. Modelling used multiple logit regression models with and without spatial household random effects. Structural equation models were used in modelling the complex relationships between multiple exposures and the outcome (child HIV/TB mortality as relayed on a conceptual framework. Results: Fifty-four of 6,692 children aged 1–5 years died of HIV/TB, from a total of 5,084 households. Maternal death had the greatest effect on child HIV/TB mortality (adjusted odds ratio=4.00; 95% confidence interval=1.01–15.80. A protective effect was found in households with better socio-economic status and when the child was older. Spatial models disclosed that the areas which experienced the greatest child HIV/TB mortality were those without any health facility. Conclusion: Low socio-economic status and maternal deaths impacted indirectly and directly on child mortality, respectively. These factors are major concerns locally and should be used in formulating interventions to reduce child mortality. Spatial prediction maps can guide policy

  5. Spatial changes in the prokaryotic community structure across a soil catena

    Science.gov (United States)

    Semenov, Mikhail; Zhuravleva, Anna; Tkhakakhova, Azida

    2017-04-01

    Mesorelief is a complex biogeochemical factor regulating hydrothermal regimes of the surface soil layer, the type of plant cover, etc., and, therefore, influences on soil microbial community structure. A natural model of soil sequence across the slope is a soil catena. Soils forming on various mesorelief positions significantly differ in physicochemical and biological properties, leading to the changes in spatial distribution of various bacterial and archaeal taxa across the soil catena. The aim of this study was to determine soil microbial community structure of different ecosystems corresponding to three mesorelief positions within the soil catena. The catena was located at the right bank of the Oka River (Moscow region, Russian Federation). Soil samples were taken at depths of 0-20 cm, 20-40 cm, and 40-60 cm from three sites within the transect of 960 m with elevation of 80 m, corresponding to the autonomous (AU), transitional (TR) (both Luvisols), and accumulative (AC) (Fluvisol Umbric) positions of the landscape. The dominant vegetation of studied sites were rootstock- and loose bunchgrasses of the fallow ecosystem (AU), a secondary small-leaved forest of the forest ecosystem (TR), and a meadow-bog association of the meadow-bog ecosystem (AC). The distances between the sites were 680 m (AU and TR), and 280 m (TR and AC). The soil samples were homogenized, and the total community DNA of three replicates was extracted using the FastDNA® SPIN kit for Soil. All DNA replicates were combined in a pooled sample and the DNA was used for PCR with specific primers for the 16S V3 and V4 regions. The products were purified and submitted to Illumina MiSeq sequencing. Obtained sequence data were evaluated using the MiSeq Reporter Metagenomics Workflow and QIIME. Quantification of the bacterial and archaeal metabolically active cells was quantified by the FISH-method. Verrucomicrobia, Proteobacteria, Firmictutes and Actinobacteria were the major phyla in autonomous site

  6. NOTES ON SPATIAL-STRUCTURAL CHANGE IN URBAN SOUTH AFRICA - THE 1990S

    Directory of Open Access Journals (Sweden)

    Hermanus S. GEYER

    2009-12-01

    Full Text Available Informal businesses used to be something that was only tolerated in the former black townships during the years of apartheid. Since then the informal business sector has become an integral part of the central business setup of cities in South Africa. It not only serves to widen the security net of the urban poor in cities, it also epresents the outcome of the democratization process in the country over the past fifteen years. Yet, there has been a tendency amongst local authorities to take steps to reduce the footprint of this sector in the urban environment in recent years. This trend ties in with the new approach of government to transform South African cities to become ’world class’ centres—a step that is aimed at making the cities more visually acceptable to visitors from abroad. In this paperan attempt is made to demonstrate the importance of the informal ector within the urban business makeup and to show what role it played in the spatial-structural evolution of the urban economies during the 1990s. The paper analyzes the structure of the urban business sector as a whole and structurally links the formal and informal sectors, demonstrating the importance of both sectors in the economic makeup of the cities. It analyses the structure of the informal sector and shows how different layers of the sector potentially relates to the formal urban sector.

  7. Analysis of the spatial structure of rigid polyphenylene dendrimers by small-angle neutron scattering

    International Nuclear Information System (INIS)

    Rosenfeldt, S.; Dingenouts, N.; Poetschke, D.; Ballauff, M.; Berresheim, A.J.; Muellen, K.; Lindner, P.; Saalwaechter, K.

    2005-01-01

    The analysis of the spatial structure of a rigid polyphenylene dendrimer G4-M of fourth generation by small-angle neutron scattering (SANS) is presented. This dendrimer is composed of phenyl units and is therefore devoid of any flexible unit. The scattering intensity of dilute solutions of the dendrimer was measured by SANS at different contrast which was adjusted by mixtures of protonated and deuterated toluene. Hence, the method of contrast variation could be applied and the data yield the scattering function extrapolated to infinite contrast. The comparison of this data with simulations demonstrates that the scaffold of the dendrimer is rigid as expected from its chemical structure. The positions of the various units setting up consecutive shells of the dendrimer are relatively well localized and the entire structure cannot be modeled in terms of spherically symmetric models. No backfolding of the terminal groups can occur and the model calculations demonstrate that higher generations of this dendritic scaffold must exhibit a dense shell and a congestion of the terminal groups. This finding is directly corroborated by recent solid-state NMR data. All results show that the rigid dendrimer investigated here presents the first example for a dendritic structure whose segment density does not have its maximum at the center. Rigid scaffolds are therefore the only way to achieve the goal of a 'dense-shell' dendrimer whereas flexible scaffolds leads invariably to the 'dense-core' case

  8. NOTES ON SPATIAL-STRUCTURAL CHANGE IN URBAN SOUTH AFRICA -THE 1990s

    Directory of Open Access Journals (Sweden)

    Hermanus S. GEYER

    2009-12-01

    Full Text Available Informal businesses used to be something that was only tolerated in the former black townships during the years of apartheid. Since then the informal business sector has become an integral part of the central business setup of cities in South Africa. It not only serves to widen the security net of the urban poor in cities, it also represents the outcome of the democratization process in the country over the past fifteen years. Yet, there has been a tendency amongst local authorities to take steps to reduce the footprint of this sector in the urban environment in recent years. This trend ties in with the new approach of government to transform South African cities to become ’world class’ centres - a step that is aimed at making the cities more visually acceptable to visitors from abroad. In this paper an attempt is made to demonstrate the importance of the informal sector within the urban business makeup and to show what role it played in the spatial-structural evolution of the urban economies during the 1990s. The paper analyzes the structure of the urban business sector as a whole and structurally links the formal and informal sectors, demonstrating the importance of both sectors in the economic makeup of the cities. It analyses the structure of the informal sector and shows how different layers of the sector potentially relates to the formal urban sector.

  9. Spatial genetic structure and mitochondrial DNA phylogeography of Argentinean populations of the grasshopper Dichroplus elongatus.

    Directory of Open Access Journals (Sweden)

    Natalia Rosetti

    Full Text Available Many grasshopper species are considered of agronomical importance because they cause damage to pastures and crops. Comprehension of pest population dynamics requires a clear understanding of the genetic diversity and spatial structure of populations. In this study we report on patterns of genetic variation in the South American grasshopper Dichroplus elongatus which is an agricultural pest of crops and forage grasses of great economic significance in Argentina. We use Direct Amplification of Minisatellite Regions (DAMD and partial sequences of the cytochrome oxydase 1 (COI mitochondrial gene to investigate intraspecific structure, demographic history and gene flow patterns in twenty Argentinean populations of this species belonging to different geographic and biogeographic regions. DAMD data suggest that, although genetic drift and migration occur within and between populations, measurable relatedness among neighbouring populations declines with distance and dispersal over distances greater than 200 km is not typical, whereas effective gene flow may occur for populations separated by less than 100 km. Landscape analysis was useful to detect genetic discontinuities associated with environmental heterogeneity reflecting the changing agroecosystem. The COI results indicate the existence of strong genetic differentiation between two groups of populations located at both margins of the Paraná River which became separated during climate oscillations of the Middle Pleistocene, suggesting a significant restriction in effective dispersion mediated by females and large scale geographic differentiation. The number of migrants between populations estimated through mitochondrial and DAMD markers suggest that gene flow is low prompting a non-homogeneous spatial structure and justifying the variation through space. Moreover, the genetic analysis of both markers allows us to conclude that males appear to disperse more than females, reducing the chance of the

  10. Glycan structures contain information for the spatial arrangement of glycoproteins in the plasma membrane.

    Directory of Open Access Journals (Sweden)

    M Kristen Hall

    Full Text Available Glycoconjugates at the cell surface are crucial for cells to communicate with each other and the extracellular microenvironment. While it is generally accepted that glycans are vectorial biopolymers, their information content is unclear. This report provides evidence that distinct N-glycan structures influence the spatial arrangement of two integral membrane glycoproteins, Kv3.1 and E-cadherin, at the adherent membrane which in turn alter cellular properties. Distinct N-glycan structures were generated by heterologous expression of these glycoproteins in parental and glycosylation mutant Chinese hamster ovary cell lines. Unlike the N-linked glycans, the O-linked glycans of the mutant cell lines are similar to those of the parental cell line. Western and lectin blots of total membranes and GFP immunopurified samples, combined with glycosidase digestion reactions, were employed to verify the glycoproteins had predominantly complex, oligomannose, and bisecting type N-glycans from Pro(-5, Lec1, and Lec10B cell lines, respectively. Based on total internal reflection fluorescence and differential interference contrast microscopy techniques, and cellular assays of live parental and glycosylation mutant CHO cells, we propose that glycoproteins with complex, oligomannose or bisecting type N-glycans relay information for localization of glycoproteins to various regions of the plasma membrane in both a glycan-specific and protein-specific manner, and furthermore cell-cell interactions are required for deciphering much of this information. These distinct spatial arrangements also impact cell adhesion and migration. Our findings provide direct evidence that N-glycan structures of glycoproteins contribute significantly to the information content of cells.

  11. Spatial scale affects the relative role of stochasticity versus determinism in soil bacterial communities in wheat fields across the North China Plain.

    Science.gov (United States)

    Shi, Yu; Li, Yuntao; Xiang, Xingjia; Sun, Ruibo; Yang, Teng; He, Dan; Zhang, Kaoping; Ni, Yingying; Zhu, Yong-Guan; Adams, Jonathan M; Chu, Haiyan

    2018-02-05

    The relative importance of stochasticity versus determinism in soil bacterial communities is unclear, as are the possible influences that alter the balance between these. Here, we investigated the influence of spatial scale on the relative role of stochasticity and determinism in agricultural monocultures consisting only of wheat, thereby minimizing the influence of differences in plant species cover and in cultivation/disturbance regime, extending across a wide range of soils and climates of the North China Plain (NCP). We sampled 243 sites across 1092 km and sequenced the 16S rRNA bacterial gene using MiSeq. We hypothesized that determinism would play a relatively stronger role at the broadest scales, due to the strong influence of climate and soil differences in selecting many distinct OTUs of bacteria adapted to the different environments. In order to test the more general applicability of the hypothesis, we also compared with a natural ecosystem on the Tibetan Plateau. Our results revealed that the relative importance of stochasticity vs. determinism did vary with spatial scale, in the direction predicted. On the North China Plain, stochasticity played a dominant role from 150 to 900 km (separation between pairs of sites) and determinism dominated at more than 900 km (broad scale). On the Tibetan Plateau, determinism played a dominant role from 130 to 1200 km and stochasticity dominated at less than 130 km. Among the identifiable deterministic factors, soil pH showed the strongest influence on soil bacterial community structure and diversity across the North China Plain. Together, 23.9% of variation in soil microbial community composition could be explained, with environmental factors accounting for 19.7% and spatial parameters 4.1%. Our findings revealed that (1) stochastic processes are relatively more important on the North China Plain, while deterministic processes are more important on the Tibetan Plateau; (2) soil pH was the major factor in shaping

  12. Local topography shapes fine-scale spatial genetic structure in the Arkansas Valley evening primrose, Oenothera harringtonii (Onagraceae).

    Science.gov (United States)

    Rhodes, Matthew K; Fant, Jeremie B; Skogen, Krissa A

    2014-01-01

    Identifying factors that shape the spatial distribution of genetic variation is crucial to understanding many population- and landscape-level processes. In this study, we explore fine-scale spatial genetic structure in Oenothera harringtonii (Onagraceae), an insect-pollinated, gravity-dispersed herb endemic to the grasslands of south-central and southeastern Colorado, USA. We genotyped 315 individuals with 11 microsatellite markers and utilized a combination of spatial autocorrelation analyses and landscape genetic models to relate life history traits and landscape features to dispersal processes. Spatial genetic structure was consistent with theoretical expectations of isolation by distance, but this pattern was weak (Sp = 0.00374). Anisotropic analyses indicated that spatial genetic structure was markedly directional, in this case consistent with increased dispersal along prominent slopes. Landscape genetic models subsequently confirmed that spatial genetic variation was significantly influenced by local topographic heterogeneity, specifically that geographic distance, elevation and aspect were important predictors of spatial genetic structure. Among these variables, geographic distance was ~68% more important than elevation in describing spatial genetic variation, and elevation was ~42% more important than aspect after removing the effect of geographic distance. From these results, we infer a mechanism of hydrochorous seed dispersal along major drainages aided by seasonal monsoon rains. Our findings suggest that landscape features may shape microevolutionary processes at much finer spatial scales than typically considered, and stress the importance of considering how particular dispersal vectors are influenced by their environmental context. © The American Genetic Association 2014. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

  13. Spatial structure of single and interacting Mn acceptors in GaAs

    Science.gov (United States)

    Koenraad, Paul

    2005-03-01

    Ferromagnetic semiconductors such as Ga1-xMnxAs are receiving a lot of attention at the moment because of their application in spintronic devices. However, despite intense study of deep acceptors in III-V semiconductors such as MnGa, little information has been obtained on their electronic properties at the atomic scale. Yet the spatial shape of the Mn acceptor state will influence the hole-mediated Mn-Mn coupling and thus all of the magnetic properties of ferromagnetic semiconductors such as Ga1-xMnxAs. This study presents an experimental and theoretical description of the spatial symmetry of the Mn acceptor wave-function in GaAs. We present measurements of the spatial mapping of the anisotropic wavefunction of a hole localized at a Mn acceptor. To achieve this, we have used the STM tip not only to image the Mn acceptor but also to manipulate its charge state A^0/A^- at room temperature. Within an envelope function effective mass model (EFM) the anisotropy in the acceptor wave-function can be traced to the influence of the cubic symmetry of the GaAs crystal which selects specific d-states that mix into the ground state due to the spin-orbit interaction in the valence band. Comparison with calculations based on a tight-binding model (TBM) for the Mn acceptor structure supports this conclusion. Using the same experimental and theoretical approach we furthermore explored the interaction between Mn acceptors directly by analyzing close Mn-Mn pairs, which were separated by less than 2 nm. We will discuss some implications of these results for Mn delta-doped layers grown on differently oriented growth surfaces.

  14. Seasonal and spatial variations in fish and macrocrustacean assemblage structure in Mad Island Marsh estuary, Texas

    Science.gov (United States)

    Akin, S.; Winemiller, K. O.; Gelwick, F. P.

    2003-05-01

    Fish and macrocrustacean assemblage structure was analyzed along an estuarine gradient at Mad Island Marsh (MIM), Matagorda Bay, TX, during March 1998-August 1999. Eight estuarine-dependent fish species accounted for 94% of the individual fishes collected, and three species accounted for 96% of macrocrustacean abundance. Consistent with evidence from other Gulf of Mexico estuarine studies, species richness and abundance were highest during late spring and summer, and lowest during winter and early spring. Sites near the bay supported the most individuals and species. Associations between fish abundance and environmental variables were examined with canonical correspondence analysis. The dominant gradient was associated with water depth and distance from the bay. The secondary gradient reflected seasonal variation and was associated with temperature, salinity, dissolved oxygen, and vegetation cover. At the scales examined, estuarine biota responded to seasonal variation more than spatial variation. Estuarine-dependent species dominated the fauna and were common throughout the open waters of the shallow lake during winter-early spring when water temperature and salinity were low and dissolved oxygen high. During summer-early fall, sub-optimal environmental conditions (high temperature, low DO) in upper reaches accounted for strong spatial variation in assemblage composition. Small estuarine-resident fishes and the blue crab ( Callinectes sapidus) were common in warm, shallow, vegetated inland sites during summer-fall. Estuarine-dependent species were common at deeper, more saline locations near the bay during this period. During summer, freshwater species, such as gizzard shad ( Dorosoma cepedianum) and gars ( Lepisosteus spp.), were positively associated with water depth and proximity to the bay. The distribution and abundance of fishes in MIM appear to result from the combined effects of endogenous, seasonal patterns of reproduction and migration operating on large

  15. Spatial structure of soil properties at different scales of Mt. Kilimanjaro, Tanzania

    Science.gov (United States)

    Kühnel, Anna; Huwe, Bernd

    2013-04-01

    Soils of tropical mountain ecosystems provide important ecosystem services like water and carbon storage, water filtration and erosion control. As these ecosystems are threatened by global warming and the conversion of natural to human-modified landscapes, it is important to understand the implications of these changes. Within the DFG Research Unit "Kilimanjaro ecosystems under global change: Linking biodiversity, biotic interactions and biogeochemical ecosystem processes", we study the spatial heterogeneity of soils and the available water capacity for different land use systems. In the savannah zone of Mt. Kilimanjaro, maize fields are compared to natural savannah ecosystems. In the lower montane forest zone, coffee plantations, traditional home gardens, grasslands and natural forests are studied. We characterize the soils with respect to soil hydrology, emphasizing on the spatial variability of soil texture and bulk density at different scales. Furthermore soil organic carbon and nitrogen, cation exchange capacity and the pH-value are measured. Vis/Nir-Spectroscopy is used to detect small scale physical and chemical heterogeneity within soil profiles, as well as to get information of soil properties on a larger scale. We aim to build a spectral database for these soil properties for the Kilimanjaro region in order to get rapid information for geostatistical analysis. Partial least square regression with leave one out cross validation is used for model calibration. Results for silt and clay content, as well as carbon and nitrogen content are promising, with adjusted R² ranging from 0.70 for silt to 0.86 for nitrogen. Furthermore models for other nutrients, cation exchange capacity and available water capacity will be calibrated. We compare heterogeneity within and across the different ecosystems and state that spatial structure characteristics and complexity patterns in soil parameters can be quantitatively related to biodiversity and functional diversity

  16. Spatial genetic structure within populations and management implications of the South American species Acacia aroma (Fabaceae).

    Science.gov (United States)

    Pometti, Carolina; Bessega, Cecilia; Cialdella, Ana; Ewens, Mauricio; Saidman, Beatriz; Vilardi, Juan

    2018-01-01

    The identification of factors that structure intraspecific diversity is of particular interest for biological conservation and restoration ecology. All rangelands in Argentina are currently experiencing some form of deterioration or desertification. Acacia aroma is a multipurpose species widely distributed throughout this country. In this study, we used the AFLP technique to study genetic diversity, population genetic structure, and fine-scale spatial genetic structure in 170 individuals belonging to 6 natural Argentinean populations. With 401 loci, the mean heterozygosity (HE = 0.2) and the mean percentage of polymorphic loci (PPL = 62.1%) coefficients indicated that the genetic variation is relatively high in A. aroma. The analysis with STRUCTURE showed that the number of clusters (K) was 3. With Geneland analysis, the number of clusters was K = 4, sharing the same grouping as STRUCTURE but dividing one population into two groups. When studying SGS, significant structure was detected in 3 of 6 populations. The neighbourhood size in these populations ranged from 15.2 to 64.3 individuals. The estimated gene dispersal distance depended on the effective population density and disturbance level and ranged from 45 to 864 m. The combined results suggest that a sampling strategy, which aims to maintain a considerable part of the variability contained in natural populations sampled here, would include at least 3 units defined by the clusters analyses that exhibit particular genetic properties. Moreover, the current SGS analysis suggests that within the wider management units/provinces, seed collection from A. aroma should target trees separated by a minimum distance of 50 m but preferably 150 m to reduce genetic relatedness among seeds from different trees.

  17. The Spatial Structure of Planform Migration - Curvature Relation of Meandering Rivers

    Science.gov (United States)

    Guneralp, I.; Rhoads, B. L.

    2005-12-01

    Planform dynamics of meandering rivers have been of fundamental interest to fluvial geomorphologists and engineers because of the intriguing complexity of these dynamics, the role of planform change in floodplain development and landscape evolution, and the economic and social consequences of bank erosion and channel migration. Improved understanding of the complex spatial structure of planform change and capacity to predict these changes are important for effective stream management, engineering and restoration. The planform characteristics of a meandering river channel are integral to its planform dynamics. Active meandering rivers continually change their positions and shapes as a consequence of hydraulic forces exerted on the channel banks and bed, but as the banks and bed change through sediment transport, so do the hydraulic forces. Thus far, this complex feedback between form and process is incompletely understood, despite the fact that the characteristics and the dynamics of meandering rivers have been studied extensively. Current theoretical models aimed at predicting planform dynamics relate rates of meander migration to local and upstream planform curvature where weighting of the influence of curvature on migration rate decays exponentially over distance. This theoretical relation, however, has not been rigorously evaluated empirically. Furthermore, although models based on exponential-weighting of curvature effects yield fairly realistic predictions of meander migration, such models are incapable of reproducing complex forms of bend development, such as double heading or compound looping. This study presents the development of a new methodology based on parametric cubic spline interpolation for the characterization of channel planform and the planform curvature of meandering rivers. The use of continuous mathematical functions overcomes the reliance on bend-averaged values or piece-wise discrete approximations of planform curvature - a major limitation

  18. Synthesis and Structural Determination of Temocapril Sulfoxide Hydrochlorides

    International Nuclear Information System (INIS)

    Seong, Seok Bong; Moon, Jong Taik; Kim, Jung Ahn; Choo, Dong Joon; Lee, Jae Yeol

    2012-01-01

    Impurity (or related substance) control in pharmaceutical products is a primary goal of drug development. Stringent international regulatory requirements have been in place for several years as outlined in the International Conference on Harmonization (ICH) Guidelines Q3A (R), Q3B (R) and Q3C. According to ICH guidelines, impurities associated with the manufacture of a drug substance, also known as an active pharmaceutical ingredient (API), are classified into the following categories: (1) organic impurities (process and drug-related); (2) inorganic impurities (3) residual solvents. Many potential impurities result from the API manufacturing process including starting materials, isomers, intermediates, reagents, solvents, catalysts and reaction by-products. These potential impurities should be investigated to determine process control mechanisms for their removal and the need for specification controls at appropriate points in the process. The suggested structures of the impurities can be synthesized and will provide the final evidence for their structures, previously determined by spectroscopic methods. Therefore it is essential to know the structure of these impurities in the bulk drug in order to alter the reaction condition and to reduce the quantity of impurity to an acceptable level. Isolation, identification and quantification of impurities help the pharmaceutical company to obtain a pure substance with less toxicity and safety in drug therapy

  19. Assessment of carotid plaque vulnerability using structural and geometrical determinants

    International Nuclear Information System (INIS)

    Li, Z.Y.; Tang, T.; U-King-Im, J.; Graves, M.; Gillard, J.H.; Sutcliffe, M.

    2008-01-01

    Because many acute cerebral ischemic events are caused by rupture of vulnerable carotid atheroma and subsequent thrombosis, the present study used both idealized and patient-specific carotid atheromatous plaque models to evaluate the effect of structural determinants on stress distributions within plaque. Using a finite element method, structural analysis was performed using models derived from in vivo high-resolution magnetic resonance imaging (MRI) of carotid atheroma in 40 non-consecutive patients (20 symptomatic, 20 asymptomatic). Plaque components were modeled as hyper-elastic materials. The effects of varying fibrous cap thickness, lipid core size and lumen curvature on plaque stress distributions were examined. Lumen curvature and fibrous cap thickness were found to be major determinants of plaque stress. The size of the lipid core did not alter plaque stress significantly when the fibrous cap was relatively thick. The correlation between plaque stress and lumen curvature was significant for both symptomatic (p=0.01; correlation coefficient: 0.689) and asymptomatic patients (p=0.01; correlation coefficient: 0.862). Lumen curvature in plaques of symptomatic patients was significantly larger than those of asymptomatic patients (1.50±1.0 mm -1 vs 1.25±0.75 mm -1 ; p=0.01). Specific plaque morphology (large lumen curvature and thin fibrous cap) is closely related to plaque vulnerability. Structural analysis using high-resolution MRI of carotid atheroma may help in detecting vulnerable atheromatous plaque and aid the risk stratification of patients with carotid disease. (author)

  20. X-ray structure determination and deuteration of nattokinase.

    Science.gov (United States)

    Yanagisawa, Yasuhide; Chatake, Toshiyuki; Naito, Sawa; Ohsugi, Tadanori; Yatagai, Chieko; Sumi, Hiroyuki; Kawaguchi, Akio; Chiba-Kamosida, Kaori; Ogawa, Megumi; Adachi, Tatsumi; Morimoto, Yukio

    2013-11-01

    Nattokinase (NK) is a strong fibrinolytic enzyme, which is produced in abundance by Bacillus subtilis natto. Although NK is a member of the subtilisin family, it displays different substrate specificity when compared with other subtilisins. The results of molecular simulations predict that hydrogen arrangements around Ser221 at the active site probably account for the substrate specificity of NK. Therefore, neutron crystallographic analysis should provide valuable information that reveals the enzymatic mechanism of NK. In this report, the X-ray structure of the non-hydrogen form of undeuterated NK was determined, and the preparation of deuterated NK was successfully achieved. The non-hydrogen NK structure was determined at 1.74 Å resolution. The three-dimensional structures of NK and subtilisin E from Bacillus subtilis DB104 are near identical. Deuteration of NK was carried out by cultivating Bacillus subtilis natto in deuterated medium. The D2O resistant strain of Bacillus subtilis natto was obtained by successive cultivation rounds, in which the concentration of D2O in the medium was gradually increased. NK was purified from the culture medium and its activity was confirmed by the fibrin plate method. The results lay the framework for neutron protein crystallography analysis.

  1. Determination of spatial continuity of soil lead levels in an urban residential neighborhood

    Energy Technology Data Exchange (ETDEWEB)

    Shinn, N.J.; Bing-Canar, J.; Cailas, M.; Peneff, N.; Binns, H.J.

    2000-01-01

    This study uses geostatistical techniques to model and estimate soil lead levels in an urban, residential neighborhood. Sixty-two composite soil samples in a four-block area of brick and stone homes were obtained. The spatial continuity of soil lead levels was modeled with a semi-variogram, which was then used to estimate lead levels at unsampled locations, a process called kriging. Because soil lead levels were spatially correlated, it is likely that a nonrandom process generated the lead distribution found. This finding signifies the existence of lead sources which were tentatively identified on historical maps of the area and from past traffic volume patterns. The distribution of kriged estimates of soil lead levels provides an explanatory tool for exploring and identifying potential sources and may be useful for targeting urban soil abatement efforts.

  2. Spatial variations and determinants of infant and under-five mortality in Bangladesh.

    Science.gov (United States)

    Gruebner, Oliver; Khan, Mmh; Burkart, Katrin; Lautenbach, Sven; Lakes, Tobia; Krämer, Alexander; Subramanian, S V; Galea, Sandro

    2017-09-01

    Reducing child mortality is a Sustainable Development Goal yet to be achieved by many low-income countries. We applied a subnational and spatial approach based on publicly available datasets and identified permanent insolvency, urbanicity, and malaria endemicity as factors associated with child mortality. We further detected spatial clusters in the east of Bangladesh and noted Sylhet and Jamalpur as those districts that need immediate attention to reduce child mortality. Our approach is transferable to other regions in comparable settings worldwide and may guide future studies to identify subnational regions in need for public health attention. Our study adds to our understanding where we may intervene to more effectively improve health, particularly among disadvantaged populations. Copyright © 2017 Elsevier Ltd. All rights reserved.

  3. Life history and spatial determinants of somatic growth dynamics in Komodo dragon populations

    OpenAIRE

    Laver, Rj; Purwandana, D; Ariefiandy, A; Imansyah, J; Forsyth, D; Ciofi, C; Jessop, Ts

    2012-01-01

    Somatic growth patterns represent a major component of organismal fitness and may vary among sexes and populations due to genetic and environmental processes leading to profound differences in life-history and demography. This study considered the ontogenic, sex-specific and spatial dynamics of somatic growth patterns in ten populations of the world's largest lizard the Komodo dragon (Varanus komodoensis). The growth of 400 individual Komodo dragons was measured in a capture-mark-recapture st...

  4. The determinants of total entrepreneurial activity : a spatial approach / by Albertus Jacobus Meintjes

    OpenAIRE

    Meintjes, Albertus Jakobus

    2006-01-01

    Various bodies and governments from around the world have recognised the importance of entrepreneurship in economic growth and job creation. The rate of start-up businesses and entrepreneurial activity is crucial in every country. The Global Entrepreneurship Monitor (GEM) recognises the contribution of entrepreneurial activity to economic growth and measures it by means of the total entrepreneurial activity (TEA) index. Most recent evidence suggests that regional (or spatial...

  5. Spatial variation of dung beetle assemblages associated with forest structure in remnants of southern Brazilian Atlantic Forest

    Directory of Open Access Journals (Sweden)

    Pedro Giovâni da Silva

    2016-01-01

    Full Text Available The Brazilian Atlantic Forest is one of the world's biodiversity hotspots, and is currently highly fragmented and disturbed due to human activities. Variation in environmental conditions in the Atlantic Forest can influence the distribution of species, which may show associations with some environmental features. Dung beetles (Coleoptera: Scarabaeinae are insects that act in nutrient cycling via organic matter decomposition and have been used for monitoring environmental changes. The aim of this study is to identify associations between the spatial distribution of dung beetle species and Atlantic Forest structure. The spatial distribution of some dung beetle species was associated with structural forest features. The number of species among the sampling sites ranged widely, and few species were found in all remnant areas. Principal coordinates analysis indicated that species composition, abundance and biomass showed a spatially structured distribution, and these results were corroborated by permutational multivariate analysis of variance. The indicator value index and redundancy analysis showed an association of several dung beetle species with some explanatory environmental variables related to Atlantic Forest structure. This work demonstrated the existence of a spatially structured distribution of dung beetles, with significant associations between several species and forest structure in Atlantic Forest remnants from Southern Brazil. Keywords: Beta diversity, Species composition, Species diversity, Spatial distribution, Tropical forest

  6. Chromatin Structure and Replication Origins: Determinants Of Chromosome Replication And Nuclear Organization

    Science.gov (United States)

    Smith, Owen K.; Aladjem, Mirit I.

    2014-01-01

    The DNA replication program is, in part, determined by the epigenetic landscape that governs local chromosome architecture and directs chromosome duplication. Replication must coordinate with other biochemical processes occurring concomitantly on chromatin, such as transcription and remodeling, to insure accurate duplication of both genetic and epigenetic features and to preserve genomic stability. The importance of genome architecture and chromatin looping in coordinating cellular processes on chromatin is illustrated by two recent sets of discoveries. First, chromatin-associated proteins that are not part of the core replication machinery were shown to affect the timing of DNA replication. These chromatin-associated proteins could be working in concert, or perhaps in competition, with the transcriptional machinery and with chromatin modifiers to determine the spatial and temporal organization of replication initiation events. Second, epigenetic interactions are mediated by DNA sequences that determine chromosomal replication. In this review we summarize recent findings and current models linking spatial and temporal regulation of the replication program with epigenetic signaling. We discuss these issues in the context of the genome’s three-dimensional structure with an emphasis on events occurring during the initiation of DNA replication. PMID:24905010

  7. Updated constraints on spatial variations of the fine-structure constant

    Directory of Open Access Journals (Sweden)

    A.M.M. Pinho

    2016-05-01

    Full Text Available Recent work by Webb et al. has provided indications of spatial variations of the fine-structure constant, α, at a level of a few parts per million. Using a dataset of 293 archival measurements, they further show that a dipole provides a statistically good fit to the data, a result subsequently confirmed by other authors. Here we show that a more recent dataset of dedicated measurements further constrains these variations: although there are only 10 such measurements, their uncertainties are considerably smaller. We find that a dipolar variation is still a good fit to the combined dataset, but the amplitude of such a dipole must be somewhat smaller: 8.1±1.7 ppm for the full dataset, versus 9.4±2.2 ppm for the Webb et al. data alone, both at the 68.3% confidence level. Constraints on the direction on the sky of such a dipole are also significantly improved. On the other hand the data can't yet discriminate between a pure spatial dipole and one with an additional redshift dependence.

  8. Understanding Urban Spatial Structure of Shanghai Central City Based on Mobile Phone Data

    Institute of Scientific and Technical Information of China (English)

    Niu; Xinyi; Ding; Liang; Song; Xiaodong; Zhang; Qingfei

    2015-01-01

    Taking Shanghai Central City as its case study, this paper presents an approach to exploring the urban spatial structure through mobile phone positioning data. Firstly, based on base station location data and mobile phone signaling data, the paper analyses the number of users connecting to each base station, and further generates the maps of mobile phone user density through kernel density analysis. We move on to calculate the multi-day average user density based on a time frame of 10:00 and 23:00 at workdays and 15:00 and 23:00 at weekends for Shanghai Central City. Then, through spatial aggregation and density classifi cation on the density maps of 10:00 at workdays and 15:00 at weekends, we identify the ranks and functions of public centers within Shanghai Central City. Lastly, we identify residential areas, business off ice areas, and leisure areas in Shanghai Central City and measure the degree of functional mix by comparing the ratio of day and night user density as well as the user density at nighttime of workdays and weekends.

  9. CCD observations of the spatial structure of the hydrogen Balmer-alpha (Hα) diffuse galactic background

    International Nuclear Information System (INIS)

    Brinkmann, J.V.

    1987-01-01

    Images of hydrogen Balmer alpha emission were obtained in the galactic plane at the Orion arm rest velocity at longitudes of 66, 96, and 114 0 and at the Perseus arm velocity at 114 0 . These directions were chosen because of their lack of birth nebular emission and their high [Sll]6731/Hα ratio, a characteristic of the faint galactic emission-line background. The narrow band (0.26A) images were obtained during June and August 1985, and June 1986, with a newly-constructed RCA SID501DX CCD camera used with the existing 15-cm Fabry-Perot spectrometer at the Physical Sciences Laboratory of the University of Wisconsin, Madison. The field of view was 0. 0 75, with each binned pixel covering about two arc minutes. All images show a significant variation in detected Hα emission at the third-of-half-degree scale. The emission intensity varies by a factor of two over each field of view. Comparison of Orion arm and Perseus arm results indicates extinction is the most-likely cause of the observed spatial structure but star counts taken from the blue plate of Palomar Sky Survey show little spatial correlation with the α emission. This dilemma may be resolved by further investigations using IRAS images, which were not available in time for inclusion in this thesis

  10. STRUCTURE, SPATIAL DISTRIBUTION AND SEED YIELD FOR ANDIROBA (Carapa guianensis Aubl. IN SOUTH RORAIMA

    Directory of Open Access Journals (Sweden)

    Ademir R. Ruschel

    2009-09-01

    Full Text Available Andiroba is one of the Amazon species with great potential of exploration for timber and non-timberforest products (NFTPs. This work was carried out with the objective of studying the population structure,spatial distribution and seed yield in a native forest of andiroba in the south of Roraima state. A permanentsample plot of 300 x 300 m (9 ha was installed and all the trees with DBH equal or superior to 10 cm wereidentified, mapped and measured. In each tree, the light climate, crown form and lianas load were appraised.To identify the spatial distribution, the medium variance/average rate and the Morisita’s Index were used.The seed yield data were obtained by the seed weighing, being 145 trees monitored during 2006. Thepopulation presented a diametric distribution of the j inverted type, and a seed yield of 65,4 kg.ha-1 withaverage of 8,3 kg.tree-1 was observed. DBH ≥ 30 cm was considered as borderline for commercial seed yield,allowing stratifying the population in juveniles (DBH ≤ 30 cm and adults (DBH > 30 cm. The spatialdistribution analysis showed that adult individuals presented random distribution and the juveniles tendencyof grouping.

  11. The Focus of Spatial Attention Determines the Number and Precision of Face Representations in Working Memory.

    Science.gov (United States)

    Towler, John; Kelly, Maria; Eimer, Martin

    2016-06-01

    The capacity of visual working memory for faces is extremely limited, but the reasons for these limitations remain unknown. We employed event-related brain potential measures to demonstrate that individual faces have to be focally attended in order to be maintained in working memory, and that attention is allocated to only a single face at a time. When 2 faces have to be memorized simultaneously in a face identity-matching task, the focus of spatial attention during encoding predicts which of these faces can be successfully maintained in working memory and matched to a subsequent test face. We also show that memory representations of attended faces are maintained in a position-dependent fashion. These findings demonstrate that the limited capacity of face memory is directly linked to capacity limits of spatial attention during the encoding and maintenance of individual face representations. We suggest that the capacity and distribution of selective spatial attention is a dynamic resource that constrains the capacity and fidelity of working memory for faces. © The Author 2015. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

  12. Life-stage differences in spatial genetic structure in an irruptive forest insect: implications for dispersal and spatial synchrony

    Science.gov (United States)

    Patrick M.A. James; Barry Cooke; Bryan M.T. Brunet; Lisa M. Lumley; Felix A.H. Sperling; Marie-Josee Fortin; Vanessa S. Quinn; Brian R. Sturtevant

    2015-01-01

    Dispersal determines the flux of individuals, energy and information and is therefore a key determinant of ecological and evolutionary dynamics. Yet, it remains difficult to quantify its importance relative to other factors. This is particularly true in cyclic populations in which demography, drift and dispersal contribute to spatio-temporal variability in genetic...

  13. A use of Ramachandran potentials in protein solution structure determinations

    International Nuclear Information System (INIS)

    Bertini, Ivano; Cavallaro, Gabriele; Luchinat, Claudio; Poli, Irene

    2003-01-01

    A strategy is developed to use database-derived φ-ψ constraints during simulated annealing procedures for protein solution structure determination in order to improve the Ramachandran plot statistics, while maintaining the agreement with the experimental constraints as the sole criterion for the selection of the family. The procedure, fully automated, consists of two consecutive simulated annealing runs. In the first run, the database-derived φ-ψ constraints are enforced for all aminoacids (but prolines and glycines). A family of structures is then selected on the ground of the lowest violations of the experimental constraints only, and the φ-ψ values for each residue are examined. In the second and final run, the database-derived φ-ψ constraints are enforced only for those residues which in the first run have ended in one and the same favored φ-ψ region. For residues which are either spread over different favored regions or concentrated in disallowed regions, the constraints are not enforced. The final family is then selected, after the second run, again only based on the agreement with the experimental constraints. This automated approach was implemented in DYANA and was tested on as many as 12 proteins, including some containing paramagnetic metals, whose structures had been previously solved in our laboratory. The quality of the structures, and of Ramachandran plot statistics in particular, was notably improved while preserving the agreement with the experimental constraints

  14. What determines the structures of native folds of proteins?

    International Nuclear Information System (INIS)

    Trovato, Antonio; Hoang, Trinh X; Banavar, Jayanth R; Maritan, Amos; Seno, Flavio

    2005-01-01

    We review a simple physical model (Hoang et al 2004 Proc. Natl Acad. Sci. USA 101 7960, Banavar et al 2004 Phys. Rev. E at press) which captures the essential physico-chemical ingredients that determine protein structure, such as the inherent anisotropy of a chain molecule, the geometrical and energetic constraints placed by hydrogen bonds, sterics, and hydrophobicity. Within this framework, marginally compact conformations resembling the native state folds of proteins emerge as competing minima in the free energy landscape. Here we demonstrate that a hydrophobic-polar (HP) sequence composed of regularly repeated patterns has as its ground state a β-helical structure remarkably similar to a known architecture in the Protein Data Bank

  15. Host Proteins Determine MRSA Biofilm Structure and Integrity

    DEFF Research Database (Denmark)

    Dreier, Cindy; Nielsen, Astrid; Jørgensen, Nis Pedersen

    Human extracellular matrix (hECM) proteins aids the initial attachment and initiation of an infection, by specific binding to bacterial cell surface proteins. However, the importance of hECM proteins in structure, integrity and antibiotic resilience of a biofilm is unknown. This study aims...... to determine how specific hECM proteins affect S. aureus USA300 JE2 biofilms. Biofilms were grown in the presence of synovial fluid from rheumatoid arteritis patients to mimic in vivo conditions, where bacteria incorporate hECM proteins into the biofilm matrix. Difference in biofilm structure, with and without...... addition of hECM to growth media, was visualized by confocal laser scanning microscopy. Two enzymatic degradation experiments were used to study biofilm matrix composition and importance of hECM proteins: enzymatic removal of specific hECM proteins from growth media, before biofilm formation, and enzymatic...

  16. Spatial Control of Functional Response in 4D-Printed Active Metallic Structures

    Science.gov (United States)

    Ma, Ji; Franco, Brian; Tapia, Gustavo; Karayagiz, Kubra; Johnson, Luke; Liu, Jun; Arroyave, Raymundo; Karaman, Ibrahim; Elwany, Alaa

    2017-04-01

    We demonstrate a method to achieve local control of 3-dimensional thermal history in a metallic alloy, which resulted in designed spatial variations in its functional response. A nickel-titanium shape memory alloy part was created with multiple shape-recovery stages activated at different temperatures using the selective laser melting technique. The multi-stage transformation originates from differences in thermal history, and thus the precipitate structure, at various locations created from controlled variations in the hatch distance within the same part. This is a first example of precision location-dependent control of thermal history in alloys beyond the surface, and utilizes additive manufacturing techniques as a tool to create materials with novel functional response that is difficult to achieve through conventional methods.

  17. A Matérn model of the spatial covariance structure of point rain rates

    KAUST Repository

    Sun, Ying

    2014-07-15

    It is challenging to model a precipitation field due to its intermittent and highly scale-dependent nature. Many models of point rain rates or areal rainfall observations have been proposed and studied for different time scales. Among them, the spectral model based on a stochastic dynamical equation for the instantaneous point rain rate field is attractive, since it naturally leads to a consistent space–time model. In this paper, we note that the spatial covariance structure of the spectral model is equivalent to the well-known Matérn covariance model. Using high-quality rain gauge data, we estimate the parameters of the Matérn model for different time scales and demonstrate that the Matérn model is superior to an exponential model, particularly at short time scales.

  18. Multiple quasi-monoenergetic electron beams from laser-wakefield acceleration with spatially structured laser pulse

    Energy Technology Data Exchange (ETDEWEB)

    Ma, Y.; Li, M. H.; Li, Y. F.; Wang, J. G.; Tao, M. Z.; Han, Y. J.; Zhao, J. R.; Huang, K.; Yan, W. C.; Ma, J. L.; Li, Y. T. [Beijing National Laboratory of Condensed Matter Physics, Institute of Physics, CAS, Beijing 100080 (China); Chen, L. M., E-mail: lmchen@iphy.ac.cn [Beijing National Laboratory of Condensed Matter Physics, Institute of Physics, CAS, Beijing 100080 (China); Department of Physics and Astronomy and IFSA Collaborative Innovation Center, Shanghai Jiao Tong University, Shanghai 200240 (China); Li, D. Z. [Institute of High Energy Physics, CAS, Beijing 100049 (China); Chen, Z. Y. [Institute of Fluid Physics, China Academy of Engineering Physics, Mianyang, Sichuan 621999 (China); Sheng, Z. M. [Department of Physics and Astronomy and IFSA Collaborative Innovation Center, Shanghai Jiao Tong University, Shanghai 200240 (China); Department of Physics, Scottish Universities Physics Alliance, University of Strathclyde, Glasgow G4 0NG (United Kingdom); Zhang, J. [Department of Physics and Astronomy and IFSA Collaborative Innovation Center, Shanghai Jiao Tong University, Shanghai 200240 (China)

    2015-08-15

    By adjusting the focus geometry of a spatially structured laser pulse, single, double, and treble quasi-monoenergetic electron beams were generated, respectively, in laser-wakefield acceleration. Single electron beam was produced as focusing the laser pulse to a single spot. While focusing the laser pulse to two spots that are approximately equal in energy and size and intense enough to form their own filaments, two electron beams were produced. Moreover, with a proper distance between those two focal spots, three electron beams emerged with a certain probability owing to the superposition of the diffractions of those two spots. The energy spectra of the multiple electron beams are quasi-monoenergetic, which are different from that of the large energy spread beams produced due to the longitudinal multiple-injection in the single bubble.

  19. Constraining spatial variations of the fine-structure constant in symmetron models

    Directory of Open Access Journals (Sweden)

    A.M.M. Pinho

    2017-06-01

    Full Text Available We introduce a methodology to test models with spatial variations of the fine-structure constant α, based on the calculation of the angular power spectrum of these measurements. This methodology enables comparisons of observations and theoretical models through their predictions on the statistics of the α variation. Here we apply it to the case of symmetron models. We find no indications of deviations from the standard behavior, with current data providing an upper limit to the strength of the symmetron coupling to gravity (log⁡β2<−0.9 when this is the only free parameter, and not able to constrain the model when also the symmetry breaking scale factor aSSB is free to vary.

  20. A Matérn model of the spatial covariance structure of point rain rates

    KAUST Repository

    Sun, Ying; Bowman, Kenneth P.; Genton, Marc G.; Tokay, Ali

    2014-01-01

    It is challenging to model a precipitation field due to its intermittent and highly scale-dependent nature. Many models of point rain rates or areal rainfall observations have been proposed and studied for different time scales. Among them, the spectral model based on a stochastic dynamical equation for the instantaneous point rain rate field is attractive, since it naturally leads to a consistent space–time model. In this paper, we note that the spatial covariance structure of the spectral model is equivalent to the well-known Matérn covariance model. Using high-quality rain gauge data, we estimate the parameters of the Matérn model for different time scales and demonstrate that the Matérn model is superior to an exponential model, particularly at short time scales.

  1. Restoring method for missing data of spatial structural stress monitoring based on correlation

    Science.gov (United States)

    Zhang, Zeyu; Luo, Yaozhi

    2017-07-01

    Long-term monitoring of spatial structures is of great importance for the full understanding of their performance and safety. The missing part of the monitoring data link will affect the data analysis and safety assessment of the structure. Based on the long-term monitoring data of the steel structure of the Hangzhou Olympic Center Stadium, the correlation between the stress change of the measuring points is studied, and an interpolation method of the missing stress data is proposed. Stress data of correlated measuring points are selected in the 3 months of the season when missing data is required for fitting correlation. Data of daytime and nighttime are fitted separately for interpolation. For a simple linear regression when single point's correlation coefficient is 0.9 or more, the average error of interpolation is about 5%. For multiple linear regression, the interpolation accuracy is not significantly increased after the number of correlated points is more than 6. Stress baseline value of construction step should be calculated before interpolating missing data in the construction stage, and the average error is within 10%. The interpolation error of continuous missing data is slightly larger than that of the discrete missing data. The data missing rate of this method should better not exceed 30%. Finally, a measuring point's missing monitoring data is restored to verify the validity of the method.

  2. Spatial-temporal analysis of coherent offshore wind field structures measured by scanning Doppler-lidar

    Science.gov (United States)

    Valldecabres, L.; Friedrichs, W.; von Bremen, L.; Kühn, M.

    2016-09-01

    An analysis of the spatial and temporal power fluctuations of a simplified wind farm model is conducted on four offshore wind fields data sets, two from lidar measurements and two from LES under unstable and neutral atmospheric conditions. The integral length scales of the horizontal wind speed computed in the streamwise and the cross-stream direction revealed the elongation of the structures in the direction of the mean flow. To analyse the effect of the structures on the power output of a wind turbine, the aggregated equivalent power of two wind turbines with different turbine spacing in the streamwise and cross-stream direction is analysed at different time scales under 10 minutes. The fact of considering the summation of the power of two wind turbines smooths out the fluctuations of the power output of a single wind turbine. This effect, which is stronger with increasing spacing between turbines, can be seen in the aggregation of the power of two wind turbines in the streamwise direction. Due to the anti-correlation of the coherent structures in the cross-stream direction, this smoothing effect is stronger when the aggregated power is computed with two wind turbines aligned orthogonally to the mean flow direction.

  3. Purification and primary structure determination of human lysosomal dipeptidase.

    Science.gov (United States)

    Dolenc, Iztok; Mihelic, Marko

    2003-02-01

    The lysosomal metallopeptidase is an enzyme that acts preferentially on dipeptides with unsubstituted N- and C-termini. Its activity is highest in slightly acidic pH. Here we describe the isolation and characterization of lysosomal dipeptidase from human kidney. The isolated enzyme has the amino-terminal sequence DVAKAIINLAVY and is a homodimer with a molecular mass of 100 kDa. So far no amino acid sequence has been determined for this metallopeptidase. The complete primary structure as deduced from the nucleotide sequence revealed that the isolated dipeptidase is similar to blood plasma glutamate carboxypeptidase.

  4. Structure determination of spider silk from X-ray images

    Energy Technology Data Exchange (ETDEWEB)

    Ulrich, Stephan; Zippelius, Annette [Universitaet Goettingen, Institut fuer Theoretische Physik (Germany); Meling, Martin [Max-Planck-Institut fuer biophysikalische Chemie, Goettingen (Germany); Glisovic, Anja; Salditt, Tim [Universitaet Goettingen, Institut fuer Roentgenphysik (Germany)

    2008-07-01

    Spider silk consists of interconnected crystallites, which are typically aligned along the fiber axis. We present a method to systematically determine the structure of these crystallites. Hereby we introduce a model that calculates the scattering function G(q) which is fitted to the measured X-ray image (silk from nephila clavipes). With it, the crystallites' size, the constitution and dimensions of their unit cell, as well as their tilt with respect to the fiber axis is identified, and furthermore the effect of coherent scattering from different crystallites is investigated. The shown methods and the presented model can easily be generalized to a wide class of composite materials.

  5. Shallow lunar structure determined from the passive seismic experiment

    International Nuclear Information System (INIS)

    Nakamura, Y.; Dorman, J.; Duennebier, F.; Lammlein, D.; Latham, G.

    1975-01-01

    Data relevant to the shallow structure of the Moon obtained at the Apollo seismic stations are compared with previously published results of the active seismic experiments. It is concluded that the lunar surface is covered by a layer of low seismic velocity (Vsub(p) approximately equal to 100 ms -1 ), which appears to be equivalent to the lunar regolith defined previously by geological observations. This layer is underlain by a zone of distinctly higher seismic velocity at all of the Apollo landing sites. The regolith thicknesses at the Apollo 11, 12, and 15 sites are estimated from the shear-wave resonance to be 4.4, 3.7, and 4.4m, respectively. These thicknesses and those determined at the other Apollo sites by the active seismic experiments appear to be correlated with the age determinations and the abundances of extra-lunar components at the sites. (Auth.)

  6. Crystallographic Orientation Determination of Hexagonal Structure Crystals by Laser Ultrasonic Technique

    International Nuclear Information System (INIS)

    Li, W; Coulson, J; Marrow, P; Smith, R J; Clark, M; Sharples, S D; Lainé, S J

    2016-01-01

    Spatially resolved acoustic spectroscopy (SRAS) is a laser ultrasonic technique that shows qualitative contrast between grains of different orientation, illustrating the sensitivity of acoustic waves to the material structure. The technique has been improved significantly on determining the full orientation of multigrain cubic metals, by comparing the measured surface acoustic wave (SAW) velocity to a pre-calculated model. In this paper we demonstrate the ability of this technique to determine the orientation of hexagonal structure crystals, such as magnesium and titanium based alloys. Because of the isotropy of the SAW velocity on the basal plane (0001) of hexagonal crystals, the slowness surface is shown as a circle. As the plane moves from (0001) towards (112-bar0) or towards (101-bar0), the slowness surface gradually turns into an oval. These acoustic properties increase the difficulty in orientation determination. The orientation results of a grade 1 commercially pure titanium by SRAS is presented, with comparison with electron backscattered diffraction (EBSD) results. Due to the nature of SAWs on hexagonal structure crystals, only the results of Euler angles 1 and 2 are discussed. The error between SRAS and EBSD is also investigated. (paper)

  7. Congruence between morphological and molecular markers inferred from the analysis of the intra-morphotype genetic diversity and the spatial structure of Oxalis tuberosa Mol.

    Science.gov (United States)

    Pissard, Audrey; Arbizu, Carlos; Ghislain, Marc; Faux, Anne-Michèle; Paulet, Sébastien; Bertin, Pierre

    2008-01-01

    Oxalis tuberosa is an important crop cultivated in the highest Andean zones. A germplasm collection is maintained ex situ by CIP, which has developed a morphological markers system to classify the accessions into morphotypes, i.e. groups of morphologically identical accessions. However, their genetic uniformity is currently unknown. The ISSR technique was used in two experiments to determine the relationships between both morphological and molecular markers systems. The intra-morphotype genetic diversity, the spatial structures of the diversity and the congruence between both markers systems were determined. In the first experience, 44 accessions representing five morphotypes, clearly distinct from each other, were analyzed. At the molecular level, the accessions exactly clustered according to their morphotypes. However, a genetic variability was observed inside each morphotype. In the second experiment, 34 accessions gradually differing from each other on morphological base were analyzed. The morphological clustering showed no geographical structure. On the opposite, the molecular analysis showed that the genetic structure was slightly related to the collection site. The correlation between both markers systems was weak but significant. The lack of perfect congruence between morphological and molecular data suggests that the morphological system may be useful for the morphotypes management but is not appropriate to study the genetic structure of the oca. The spatial structure of the genetic diversity can be related to the evolution of the species and the discordance between the morphological and molecular structures may result from similar selection pressures at different places leading to similar forms with a different genetic background.

  8. Spatial Structure of Cities and Distribution of Retail Sales - Analysis based on a Potential NEG Model (Japanese)

    OpenAIRE

    NAKAMURA Ryohei; TAKATSUKA Hajime

    2009-01-01

    This paper aims to estimate the retail sales turnover in cities based on a potential New Economic Geography (NEG) model, addressing how (the distribution of) sales turnover is explained by the spatial structure of cities. This also takes into account the population distribution, by treating the spatial distribution of population and retail sales turnover in the cities by district and street (cho and chome) data. The cities covered are prefectural cities excluding government ordinance cities l...

  9. Determining the spatial heterogeneity underlying racial and ethnic differences in timely mammography screening

    Directory of Open Access Journals (Sweden)

    Joseph Gibbons

    2016-11-01

    Full Text Available Abstract Background The leading cause of cancer death for women worldwide continues to be breast cancer. Early detection through timely mammography has been recognized to increase the probability of survival. While mammography rates have risen for many women in recent years, disparities in screening along racial/ethnic lines persist across nations. In this paper, we argue that the role of local context, as identified through spatial heterogeneity, is an unexplored dynamic which explains some of the gaps in mammography utilization by race/ethnicity. Methods We apply geographically weighted regression methods to responses from the 2008 Public Health Corporations’ Southeastern Household Health Survey, to examine the spatial heterogeneity in mammograms in the Philadelphia metropolitan area. Results We find first aspatially that minority identity, in fact, increases the odds of a timely mammogram: 74% for non-Hispanic Blacks and 80% for Hispanic/Latinas. However, the geographically weighted regression confirms the relation of race/ethnicity to mammograms varies by space. Notably, the coefficients for Hispanic/Latinas are only significant in portions of the region. In other words, the increased odds of a timely mammography we found are not constant spatially. Other key variables that are known to influence timely screening, such as the source of healthcare and social capital, measured as community connection, also vary by space. Conclusions These results have ramifications globally, demonstrating that the influence of individual characteristics which motivate, or inhibit, cancer screening may not be constant across space. This inconsistency calls for healthcare practitioners and outreach services to be mindful of the local context in their planning and resource allocation efforts.

  10. Determination of spatially dependent transfer function of zero power reactor by using pseudo-random incentive

    International Nuclear Information System (INIS)

    Kostic, Lj.

    1973-01-01

    Specially constructed fast reactivity oscillator was stimulating the zero power reactor by a stimulus which caused pseudo-random reactivity changes. Measuring system included stochastic oscillator BCR-1 supplied by pseudo-random pulses from noise generator GBS-16, instrumental tape-recorder, system for data acquisition and digital computer ZUSE-Z-23. For measuring the spatially dependent transfer function, reactor response was measured at a number of different positions of stochastic oscillator and ionization chamber. In order to keep the reactor system linear, experiment was limited to small reactivity fluctuations. Experimental results were compared to theoretical ones

  11. Spatial distribution

    DEFF Research Database (Denmark)

    Borregaard, Michael Krabbe; Hendrichsen, Ditte Katrine; Nachman, Gøsta Støger

    2008-01-01

    , depending on the nature of intraspecific interactions between them: while the individuals of some species repel each other and partition the available area, others form groups of varying size, determined by the fitness of each group member. The spatial distribution pattern of individuals again strongly......Living organisms are distributed over the entire surface of the planet. The distribution of the individuals of each species is not random; on the contrary, they are strongly dependent on the biology and ecology of the species, and vary over different spatial scale. The structure of whole...... populations reflects the location and fragmentation pattern of the habitat types preferred by the species, and the complex dynamics of migration, colonization, and population growth taking place over the landscape. Within these, individuals are distributed among each other in regular or clumped patterns...

  12. Is a matrix exponential specification suitable for the modeling of spatial correlation structures?

    Science.gov (United States)

    Strauß, Magdalena E; Mezzetti, Maura; Leorato, Samantha

    2017-05-01

    This paper investigates the adequacy of the matrix exponential spatial specifications (MESS) as an alternative to the widely used spatial autoregressive models (SAR). To provide as complete a picture as possible, we extend the analysis to all the main spatial models governed by matrix exponentials comparing them with their spatial autoregressive counterparts. We propose a new implementation of Bayesian parameter estimation for the MESS model with vague prior distributions, which is shown to be precise and computationally efficient. Our implementations also account for spatially lagged regressors. We further allow for location-specific heterogeneity, which we model by including spatial splines. We conclude by comparing the performances of the different model specifications in applications to a real data set and by running simulations. Both the applications and the simulations suggest that the spatial splines are a flexible and efficient way to account for spatial heterogeneities governed by unknown mechanisms.

  13. Simple surface structure determination from Fourier transforms of angle-resolved photoemission extended fine structure

    Energy Technology Data Exchange (ETDEWEB)

    Zheng, Y. [Pennsylvania State Univ., University Park, PA (United States)]|[Lawrence Berkeley Lab., CA (United States); Shirley, D.A. [Pennsylvania State Univ., University Park, PA (United States)

    1995-02-01

    The authors show by Fourier analyses of experimental data, with no further treatment, that the positions of all the strong peaks in Fourier transforms of angle-resolved photoemission extended fine structure (ARPEFS) from adsorbed surfaces can be explicitly predicted from a trial structure with an accuracy of about {+-} 0.3 {angstrom} based on a single-scattering cluster model together with the concept of a strong backscattering cone, and without any additional analysis. This characteristic of ARPEFS Fourier transforms can be developed as a simple method for determining the structures of adsorbed surfaces to an accuracy of about {+-} 0.1 {angstrom}.

  14. Life-history and spatial determinants of somatic growth dynamics in Komodo dragon populations.

    Science.gov (United States)

    Laver, Rebecca J; Purwandana, Deni; Ariefiandy, Achmad; Imansyah, Jeri; Forsyth, David; Ciofi, Claudio; Jessop, Tim S

    2012-01-01

    Somatic growth patterns represent a major component of organismal fitness and may vary among sexes and populations due to genetic and environmental processes leading to profound differences in life-history and demography. This study considered the ontogenic, sex-specific and spatial dynamics of somatic growth patterns in ten populations of the world's largest lizard the Komodo dragon (Varanus komodoensis). The growth of 400 individual Komodo dragons was measured in a capture-mark-recapture study at ten sites on four islands in eastern Indonesia, from 2002 to 2010. Generalized Additive Mixed Models (GAMMs) and information-theoretic methods were used to examine how growth rates varied with size, age and sex, and across and within islands in relation to site-specific prey availability, lizard population density and inbreeding coefficients. Growth trajectories differed significantly with size and between sexes, indicating different energy allocation tactics and overall costs associated with reproduction. This leads to disparities in maximum body sizes and longevity. Spatial variation in growth was strongly supported by a curvilinear density-dependent growth model with highest growth rates occurring at intermediate population densities. Sex-specific trade-offs in growth underpin key differences in Komodo dragon life-history including evidence for high costs of reproduction in females. Further, inverse density-dependent growth may have profound effects on individual and population level processes that influence the demography of this species.

  15. History and Productivity Determine the Spatial Distribution of Key Habitats for Biodiversity in Norwegian Forest Landscapes

    Directory of Open Access Journals (Sweden)

    Magne Sætersdal

    2016-01-01

    Full Text Available Retention forestry, including the retention of woodland key habitats (WKH at the forest stand scale, has become an essential management practice in boreal forests. Here, we investigate the spatial distribution of 9470 habitat patches, mapped according to the Complementary Habitat Inventory method (CHI habitats, as potential WKHs in 10 sample areas in Norway. We ask whether there are parts of the forest landscapes that have consistently low or high density of CHI habitats compared to the surveyed landscape as a whole, and therefore have a low or high degree of conflict with harvesting, respectively. We found that there was a general pattern of clumped distribution of CHI habitats at distances up to a few kilometres. Furthermore, results showed that most types of CHI habitats were approximately two to three times as common in the 25% steepest slopes, lowest altitudes and highest site indices. CHI habitats that are most common in old-growth forests were found at longer distances from roads, whereas habitats rich in deciduous trees were found at shorter distances from roads than expected. Both environmental factors and the history of human impact are needed to explain the spatial distribution of CHI habitats. The overrepresentation of WKHs in parts of the forest landscapes represents a good starting point to develop more efficient inventory methods.

  16. Life-history and spatial determinants of somatic growth dynamics in Komodo dragon populations.

    Directory of Open Access Journals (Sweden)

    Rebecca J Laver

    Full Text Available Somatic growth patterns represent a major component of organismal fitness and may vary among sexes and populations due to genetic and environmental processes leading to profound differences in life-history and demography. This study considered the ontogenic, sex-specific and spatial dynamics of somatic growth patterns in ten populations of the world's largest lizard the Komodo dragon (Varanus komodoensis. The growth of 400 individual Komodo dragons was measured in a capture-mark-recapture study at ten sites on four islands in eastern Indonesia, from 2002 to 2010. Generalized Additive Mixed Models (GAMMs and information-theoretic methods were used to examine how growth rates varied with size, age and sex, and across and within islands in relation to site-specific prey availability, lizard population density and inbreeding coefficients. Growth trajectories differed significantly with size and between sexes, indicating different energy allocation tactics and overall costs associated with reproduction. This leads to disparities in maximum body sizes and longevity. Spatial variation in growth was strongly supported by a curvilinear density-dependent growth model with highest growth rates occurring at intermediate population densities. Sex-specific trade-offs in growth underpin key differences in Komodo dragon life-history including evidence for high costs of reproduction in females. Further, inverse density-dependent growth may have profound effects on individual and population level processes that influence the demography of this species.

  17. Life-History and Spatial Determinants of Somatic Growth Dynamics in Komodo Dragon Populations

    Science.gov (United States)

    Laver, Rebecca J.; Purwandana, Deni; Ariefiandy, Achmad; Imansyah, Jeri; Forsyth, David; Ciofi, Claudio; Jessop, Tim S.

    2012-01-01

    Somatic growth patterns represent a major component of organismal fitness and may vary among sexes and populations due to genetic and environmental processes leading to profound differences in life-history and demography. This study considered the ontogenic, sex-specific and spatial dynamics of somatic growth patterns in ten populations of the world’s largest lizard the Komodo dragon (Varanus komodoensis). The growth of 400 individual Komodo dragons was measured in a capture-mark-recapture study at ten sites on four islands in eastern Indonesia, from 2002 to 2010. Generalized Additive Mixed Models (GAMMs) and information-theoretic methods were used to examine how growth rates varied with size, age and sex, and across and within islands in relation to site-specific prey availability, lizard population density and inbreeding coefficients. Growth trajectories differed significantly with size and between sexes, indicating different energy allocation tactics and overall costs associated with reproduction. This leads to disparities in maximum body sizes and longevity. Spatial variation in growth was strongly supported by a curvilinear density-dependent growth model with highest growth rates occurring at intermediate population densities. Sex-specific trade-offs in growth underpin key differences in Komodo dragon life-history including evidence for high costs of reproduction in females. Further, inverse density-dependent growth may have profound effects on individual and population level processes that influence the demography of this species. PMID:23028983

  18. Oh sister, where art thou? Spatial population structure and the evolution of an altruistic defence trait.

    Science.gov (United States)

    Pamminger, T; Foitzik, S; Metzler, D; Pennings, P S

    2014-11-01

    The evolution of parasite virulence and host defences is affected by population structure. This effect has been confirmed in studies focusing on large spatial scales, whereas the importance of local structure is not well understood. Slavemaking ants are social parasites that exploit workers of another species to rear their offspring. Enslaved workers of the host species Temnothorax longispinosus have been found to exhibit an effective post-enslavement defence behaviour: enslaved workers were observed killing a large proportion of the parasites' offspring. As enslaved workers do not reproduce, they gain no direct fitness benefit from this 'rebellion' behaviour. However, there may be an indirect benefit: neighbouring host nests that are related to 'rebel' nests can benefit from a reduced raiding pressure, as a result of the reduction in parasite nest size due to the enslaved workers' killing behaviour. We use a simple mathematical model to examine whether the small-scale population structure of the host species could explain the evolution of this potentially altruistic defence trait against slavemaking ants. We find that this is the case if enslaved host workers are related to nearby host nests. In a population genetic study, we confirm that enslaved workers are, indeed, more closely related to host nests within the raiding range of their resident slavemaker nest, than to host nests outside the raiding range. This small-scale population structure seems to be a result of polydomy (e.g. the occupation of several nests in close proximity by a single colony) and could have enabled the evolution of 'rebellion' by kin selection. © 2014 European Society For Evolutionary Biology. Journal of Evolutionary Biology © 2014 European Society For Evolutionary Biology.

  19. Influence of ionizing radiation on the spatial structure of erythrocyte membranes

    International Nuclear Information System (INIS)

    Dreval', V.Yi.; Syichevs'ka, L.V.; Doroshenko, A.O.; Roshal', O.D.

    1998-01-01

    Influence of gamma-radiation of doses of 10, 10 2 , 5 centre dot 10 2 , and 10 3 Gy on the structure of the protein-lipid complexes of erythrocyte membranes is investigated. The allotment of fluorescence of protein in the donor-acceptor pair of tryptophan-pyrene and the distance of protein from the surface of the lipid bilayer of a membrane are determined by the method of inductive-resonance transfer of energy. The pair is localized at the distance of above 3.2 nm from lipids. We find that the action of irradiation changes the space structure of proteins and lipids of the erythrocyte membrane

  20. Obama cares about visuo-spatial attention: perception of political figures moves attention and determines gaze direction.

    Science.gov (United States)

    Mills, Mark; Smith, Kevin B; Hibbing, John R; Dodd, Michael D

    2015-02-01

    Processing an abstract concept such as political ideology by itself is difficult but becomes easier when a background situation contextualizes it. Political ideology within American politics, for example, is commonly processed using space metaphorically, i.e., the political "left" and "right" (referring to Democrat and Republican views, respectively), presumably to provide a common metric to which abstract features of ideology can be grounded and understood. Commonplace use of space as metaphor raises the question of whether an inherently non-spatial stimulus (e.g., picture of the political "left" leader, Barack Obama) can trigger a spatially-specific response (e.g., attentional bias toward "left" regions of the visual field). Accordingly, pictures of well-known Democrats and Republicans were presented as central cues in peripheral target detection (Experiment 1) and saccadic free-choice (Experiment 2) tasks to determine whether perception of stimuli lacking a direct association with physical space nonetheless induce attentional and oculomotor biases in the direction compatible with the ideological category of the cue (i.e., Democrat/left and Republican/right). In Experiment 1, target detection following presentation of a Democrat (Republican) was facilitated for targets appearing to the left (right). In Experiment 2, participants were more likely to look left (right) following presentation of a Democrat (Republican). Thus, activating an internal representation of political ideology induced a shift of attention and biased choice of gaze direction in a spatially-specific manner. These findings demonstrate that the link between conceptual processing and spatial attention can be totally arbitrary, with no reference to physical or symbolic spatial information. Published by Elsevier B.V.

  1. Hierarchical spatial genetic structure of Common Eiders (Somateria mollissima) breeding along a migratory corridor

    Science.gov (United States)

    Sonsthagen, S.A.; Talbot, S.L.; Lanctot, Richard B.; Scribner, K.T.; McCracken, K.G.

    2009-01-01

    Documentation of spatial genetic discordance among breeding populations of Arctic-nesting avian species is important, because anthropogenic change is altering environmental linkages at micro- and macrogeographic scales. We estimated levels of population subdivision within Pacific Common Eiders (Somateria mollissima v-nigrum) breeding on 12 barrier islands in the western Beaufort Sea, Alaska, using molecular markers and capture—mark—recapture (CMR) data. Common Eider populations were genetically structured on a microgeographic scale. Regional comparisons between populations breeding on island groups separated by 90 km (Mikkelsen Bay and Simpson Lagoon) revealed structuring at 14 microsatellite loci (F ST = 0.004, P Sea are strongly philopatric to island groups rather than to a particular island. Despite the apparent high site fidelity of females, coalescence-based models of gene flow suggest that asymmetrical western dispersal occurs between island groups and is likely mediated by Mikkelsen Bay females stopping early on spring migration at Simpson Lagoon to breed. Alternatively, late-arriving females may be predisposed to nest in Simpson Lagoon because of the greater availability and wider distribution of nesting habitat. Our results indicate that genetic discontinuities, mediated by female philopatry, can exist at microgeographic scales along established migratory corridors.

  2. Spatially resolved determination of the short-circuit current density of silicon solar cells via lock-in thermography

    International Nuclear Information System (INIS)

    Fertig, Fabian; Greulich, Johannes; Rein, Stefan

    2014-01-01

    We present a spatially resolved method to determine the short-circuit current density of crystalline silicon solar cells by means of lock-in thermography. The method utilizes the property of crystalline silicon solar cells that the short-circuit current does not differ significantly from the illuminated current under moderate reverse bias. Since lock-in thermography images locally dissipated power density, this information is exploited to extract values of spatially resolved current density under short-circuit conditions. In order to obtain an accurate result, one or two illuminated lock-in thermography images and one dark lock-in thermography image need to be recorded. The method can be simplified in a way that only one image is required to generate a meaningful short-circuit current density map. The proposed method is theoretically motivated, and experimentally validated for monochromatic illumination in comparison to the reference method of light-beam induced current.

  3. Structure determination by photoelectron diffraction of small molecules on surfaces

    International Nuclear Information System (INIS)

    Booth, N.A.

    1998-05-01

    The synchrotron radiation based technique of Photoelectron Diffraction (PhD) has been applied to three adsorption systems. Structure determinations, are presented for each system which involve the adsorption of small molecules on the low index {110} plane of single crystal Cu and Ni substrates. For the NH 3 -Cu(110) system PhD was successful in determining a N-Cu bondlength of 2.05 ± 0.03 A as well as values for the anisotropic vibrational amplitudes of the N and an expansion of the 1st to 2nd Cu substrate layer spacing from the bulk value of 0.08 ± 0.08 A. The most significant and surprising structural parameter determined for this system was that the N atom occupies an asymmetric adsorption site. Rather than being situated in the expected high symmetry atop site the N atom was found to be offset parallel to the surface by 0.37 ± 0.12 A in the [001] azimuth. In studying the glycine-Cu(110) system the adsorption structure of an amino-acid has been quantified. The local adsorption geometries of all the atoms involved in the molecule to surface bond have been determined. The glycine molecule is found to be bonded to the surface via both its amino and carboxylate functional groups. The molecule straddles two [11-bar0] rows of the Cu substrate. The two O atoms are found to be in identical sites both approximately atop Cu atoms on the [11-bar0] rows offset parallel to the surface by 0.80 ± 0.05 A in the [001] azimuth, the O-Cu bondlength was found to be 2.03 ± 0.05 A. The N atom was also found to adsorb in an approximately atop geometry but offset parallel to the surface by 0.24 ± 0.10A in the [11-bar0] direction, the N-Cu bondlength was found to be 2.05± 0.05 A. PhD was unsuccessful in determining the positions of the two C atoms that form a bridge between the two functional groups bonded to the surface due to difficulties in separating the two inequivalent contributions to the final intensity modulation function. For the CN-Ni(110) system both PhD and Near Edge

  4. Calibration of neutron moisture gauges and their ability to spatially determine soil water content in environmental studies

    International Nuclear Information System (INIS)

    Nyhan, J.W.; Martinez, J.L.; Langhorst, G.J.

    1994-10-01

    Several neutron moisture gauges were calibrated, and their ability to spatially determine soil water content was evaluated. In 1982, the midpoint of sensitivity of each neutron probe to the detection of hydrogen was determined, as well as the radius of investigation of each probe in crushed Bandelier Tuff with varying water contents. After determining the response of one of the moisture gauges to changes in soil water at the soil-air interface, a neutron transport model was successfully calibrated to predict spatial variations in soil water content. The model was then used to predict various shapes and volumes of crushed Bandelier Tuff interrogated by the neutron moisture gauge. From 1991 through 1994, six neutron moisture gauges were calibrated for soil water determinations in a local topsoil and crushed Bandelier Tuff, as well as for a sample of fine sand and soils from a field experiment at Hill Air Force Base. Statistical analysis of the calibration results is presented and summarized, and a final summary of practical implications for future neutron moisture gauge studies at Los Alamos is included

  5. Structure of the gravitational field at spatial infinity. II. Asymptotically Minkowskian space--times

    International Nuclear Information System (INIS)

    Persides, S.

    1980-01-01

    A new formulation is established for the study of the asymptotic structure at spatial infinity of asymptotically Minkowskian space--times. First, the concept of an asymptotically simple space--time at spatial infinity is defined. This is a (physical) space--time (M,g) which can be imbedded in an unphysical space--time (M,g) with a boundary S, a C/sup infinity/ metric g and a C/sup infinity/ scalar field Ω such that Ω=0 on S, Ω>0 on M-S, and g/sup munu/ + g/sup mulambda/ g/sup nurho/ Ω/sub vertical-barlambda/ Ω/sub vertical-barrho/=Ω -2 g/sup murho/ +Ω -4 g/sup mulambda/ g/sup nurho/ Ω/sub ;/lambda Ω/sub ;/rho on M. Then an almost asymptotically flat space--time (AAFS) is defined as an asymptotically simple space--time for which S is isometric to the unit timelike hyperboloid and g/sup munu/ Ω/sub vertical-barmu/ Ω/sub vertical-barnu/ =Ω -4 g/sup munu/ Ω/sub ;/μΩ/sub ;/ν=-1 on S. Equivalent definitions are given in terms of the existence of coordinate systems in which g/sub munu/ or g/sub munu/ have simple explicitly given forms. The group of asymptotic symmetries of (M,g) is studied and is found to be isomorphic to the Lorentz group. The asymptotic behavior of an AAFS is studied. It is proven that the conformal metric g/sub munu/=Ω 2 g/sub munu/ gives C/sup lambdamurhonu/=0, Ω -1 C/sup lambdamurhonu/ Ω/sub ;/μ =0, Ω -2 C/sup lambdamurhonu/ Ω/sub ;/μ Ω/sub ;/ν=0 on S

  6. Smooth- and rough-wall boundary layer structure from high spatial range particle image velocimetry

    Science.gov (United States)

    Squire, D. T.; Morrill-Winter, C.; Hutchins, N.; Marusic, I.; Schultz, M. P.; Klewicki, J. C.

    2016-10-01

    Two particle image velocimetry arrangements are used to make true spatial comparisons between smooth- and rough-wall boundary layers at high Reynolds numbers across a very wide range of streamwise scales. Together, the arrangements resolve scales ranging from motions on the order of the Kolmogorov microscale to those longer than twice the boundary layer thickness. The rough-wall experiments were obtained above a continuous sandpaper sheet, identical to that used by Squire et al. [J. Fluid Mech. 795, 210 (2016), 10.1017/jfm.2016.196], and cover a range of friction and equivalent sand-grain roughness Reynolds numbers (12 000 ≲δ+≲ 18000, 62 ≲ks+≲104 ). The smooth-wall experiments comprise new and previously published data spanning 6500 ≲δ+≲17 000 . Flow statistics from all experiments show similar Reynolds number trends and behaviors to recent, well-resolved hot-wire anemometry measurements above the same rough surface. Comparisons, at matched δ+, between smooth- and rough-wall two-point correlation maps and two-point magnitude-squared coherence maps demonstrate that spatially the outer region of the boundary layer is the same between the two flows. This is apparently true even at wall-normal locations where the total (inner-normalized) energy differs between the smooth and rough wall. Generally, the present results provide strong support for Townsend's [The Structure of Turbulent Shear Flow (Cambridge University Press, Cambridge, 1956), Vol. 1] wall-similarity hypothesis in high Reynolds number fully rough boundary layer flows.

  7. INFLUENCE OF THE SPATIAL ARRANGEMENT OF SEISMIC DETECTORS ON THE ACCURACY OF EARTHQUAKE HYPOCENTRE DETERMINATION

    Directory of Open Access Journals (Sweden)

    T. G. Aslanov

    2016-01-01

    Full Text Available Objectives. To determine the coordinates of the seismic focus of an earthquake with a minimum margin of error with the use of an optimal selection of seismic sensors. Method. Seismic wave velocity data, relying on the time discrepancies between the registering of seismic waves on the seismic sensor and the defined error in determining the time difference, were used to identify errors in the location of an earthquake's hypocenter depending on the respective positions of three seismic sensors. Discrepancies between data containing an error and those without it used to determine two hypocenters provide information about the hypocenter locating error. An analysis of the influence of the respective arrangements of the seismic sensors and the earthquake epicentre on the accuracy of determination of epicentre coordinates was carried out. Results. It is established that, in order to improve the accuracy of epicenter and hypocenter earthquake coordinate determination, it is preferable to use different combinations of seismic sensors. The present recommendations are based on the desire to reduce errors in determining the earthquake source coordinates. Due to earthquake epicenter distance determination errors found in different seismic sensors both with increasing and decreasing distance, the hypocenter coordinate determining error has been found to depend on the respective arrangement of seismic sensors and on the earthquake source's geographical location. In order to determine the dependence of the source coordinate determining error on the relative position of three seismic sensors, the third seismic sensor was displaced on a horizontal plane at the location centered at the coordinate of the origin. Conclusion. When selecting seismic sensors it is essential that one of them be located perpendicular to the center of the segment formed by the other two seismic sensors. The probability of a multidirectional error of measurement at the moment of arrival of

  8. Evaluating spatial patterns of dioxins in sediments to aid determination of potential implications for marine reptiles

    Energy Technology Data Exchange (ETDEWEB)

    Hermanussen, S.; Gaus, C. [National Research Centre for Environmental Toxicology, Brisbane (Australia); Limpus, C.J. [Queensland Environmental Protection Agency, Brisbane (Australia); Paepke, O. [ERGO Forschungsgesellschaft mbH, Hamburg (Germany); Blanshard, W. [Sea World, Gold Coast (Australia); Connell, D. [School of Public Health, Griffith Univ., Brisbane (Australia)

    2004-09-15

    Recent investigations have identified elevated concentrations of polychlorinated dibenzo-p-dioxins (dioxins) in marine sediments and wildlife of Queensland, Australia. While it has been demonstrated that the contamination is widespread and predominantly land-based, limited information exists on the pathways and fate of these compounds within the near-shore marine system. This environment supports unique and threatened species including green sea turtles (Chelonia mydas). Adult green turtles are predominantly herbivorous, feeding on seagrass and algae. Apart from initial migration to feeding grounds (at {proportional_to}10 years of age) and intermittent migrations to breeding grounds (at {proportional_to}30-50 years and thereafter), green turtles remain and feed within relatively small home ranges. Long life-span (50 years or more), near-shore feeding grounds and highly specialized food requirements render green turtles potentially vulnerable to contaminant exposure. Recent studies have shown a relationship between PCDD/F concentrations found in herbivorous marine wildlife and concentrations in sediments of their habitats. Hence, the spatial evaluation of sediment PCDD/F distribution may assist the assessment of green turtle exposure and its potential implications. The present study provides baseline information on green turtle PCDD/F concentrations in Queensland, Australia and investigates exposure pathways. In addition, spatial distribution of PCDD/Fs in sediments from known green turtle feeding regions is assessed using geographic information systems. This represents the first stage of a large scale investigation into the exposure and sensitivity of marine reptiles to dioxins and dioxin-like compounds and to evaluate whether poor health status observed in some populations may be related to contaminant exposure.

  9. Three-dimensional spatial structures of solar wind turbulence from 10 000-km to 100-km scales

    Directory of Open Access Journals (Sweden)

    Y. Narita

    2011-10-01

    Full Text Available Using the four Cluster spacecraft, we have determined the three-dimensional wave-vector spectra of fluctuating magnetic fields in the solar wind. Three different solar wind intervals of Cluster data are investigated for this purpose, representing three different spatial scales: 10 000 km, 1000 km, and 100 km. The spectra are determined using the wave telescope technique (k-filtering technique without assuming the validity of Taylor's frozen-in-flow hypothesis nor are any assumptions made as to the symmetry properties of the fluctuations. We find that the spectra are anisotropic on all the three scales and the power is extended primarily in the directions perpendicular to the mean magnetic field, as might be expected of two-dimensional turbulence, however, the analyzed fluctuations are not axisymmetric. The lack of axisymmetry invalidates some earlier techniques using single spacecraft observations that were used to estimate the percentage of magnetic energy residing in quasi-two-dimensional power. However, the dominance of two-dimensional turbulence is consistent with the relatively long mean free paths of cosmic rays in observed in the heliosphere. On the other hand, the spectra also exhibit secondary extended structures oblique from the mean magnetic field direction. We discuss possible origins of anisotropy and asymmetry of solar wind turbulence spectra.

  10. Spatial and temporal changes in household structure locations using high-resolution satellite imagery for population assessment: an analysis in southern Zambia, 2006-2011

    Directory of Open Access Journals (Sweden)

    Timothy Shields

    2016-05-01

    Full Text Available Satellite imagery is increasingly available at high spatial resolution and can be used for various purposes in public health research and programme implementation. Comparing a census generated from two satellite images of the same region in rural southern Zambia obtained four and a half years apart identified patterns of household locations and change over time. The length of time that a satellite image-based census is accurate determines its utility. Households were enumerated manually from satellite images obtained in 2006 and 2011 of the same area. Spatial statistics were used to describe clustering, cluster detection, and spatial variation in the location of households. A total of 3821 household locations were enumerated in 2006 and 4256 in 2011, a net change of 435 houses (11.4% increase. Comparison of the images indicated that 971 (25.4% structures were added and 536 (14.0% removed. Further analysis suggested similar household clustering in the two images and no substantial difference in concentration of households across the study area. Cluster detection analysis identified a small area where significantly more household structures were removed than expected; however, the amount of change was of limited practical significance. These findings suggest that random sampling of households for study participation would not induce geographic bias if based on a 4.5-year-old image in this region. Application of spatial statistical methods provides insights into the population distribution changes between two time periods and can be helpful in assessing the accuracy of satellite imagery.

  11. Spatial Genetic Structure of the Abundant and Widespread Peatmoss Sphagnum magellanicum Brid.

    Directory of Open Access Journals (Sweden)

    Magni Olsen Kyrkjeeide

    Full Text Available Spore-producing organisms have small dispersal units enabling them to become widespread across continents. However, barriers to gene flow and cryptic speciation may exist. The common, haploid peatmoss Sphagnum magellanicum occurs in both the Northern and Southern hemisphere, and is commonly used as a model in studies of peatland ecology and peatmoss physiology. Even though it will likely act as a rich source in functional genomics studies in years to come, surprisingly little is known about levels of genetic variability and structuring in this species. Here, we assess for the first time how genetic variation in S. magellanicum is spatially structured across its full distribution range (Northern Hemisphere and South America. The morphologically similar species S. alaskense was included for comparison. In total, 195 plants were genotyped at 15 microsatellite loci. Sequences from two plastid loci (trnG and trnL were obtained from 30 samples. Our results show that S. alaskense and almost all plants of S. magellanicum in the northern Pacific area are diploids and share the same gene pool. Haploid plants occur in South America, Europe, eastern North America, western North America, and southern Asia, and five genetically differentiated groups with different distribution ranges were found. Our results indicate that S. magellanicum consists of several distinct genetic groups, seemingly with little or no gene flow among them. Noteworthy, the geographical separation of diploids and haploids is strikingly similar to patterns found within other haploid Sphagnum species spanning the Northern Hemisphere. Our results confirm a genetic division between the Beringian and the Atlantic that seems to be a general pattern in Sphagnum taxa. The pattern of strong genetic population structuring throughout the distribution range of morphologically similar plants need to be considered in future functional genomic studies of S. magellanicum.

  12. Limited gene dispersal and spatial genetic structure as stabilizing factors in an ant-plant mutualism.

    Science.gov (United States)

    Malé, P-J G; Leroy, C; Humblot, P; Dejean, A; Quilichini, A; Orivel, J

    2016-12-01

    Comparative studies of the population genetics of closely associated species are necessary to properly understand the evolution of these relationships because gene flow between populations affects the partners' evolutionary potential at the local scale. As a consequence (at least for antagonistic interactions), asymmetries in the strength of the genetic structures of the partner populations can result in one partner having a co-evolutionary advantage. Here, we assess the population genetic structure of partners engaged in a species-specific and obligatory mutualism: the Neotropical ant-plant, Hirtella physophora, and its ant associate, Allomerus decemarticulatus. Although the ant cannot complete its life cycle elsewhere than on H. physophora and the plant cannot live for long without the protection provided by A. decemarticulatus, these species also have antagonistic interactions: the ants have been shown to benefit from castrating their host plant and the plant is able to retaliate against too virulent ant colonies. We found similar short dispersal distances for both partners, resulting in the local transmission of the association and, thus, inbred populations in which too virulent castrating ants face the risk of local extinction due to the absence of H. physophora offspring. On the other hand, we show that the plant populations probably experienced greater gene flow than did the ant populations, thus enhancing the evolutionary potential of the plants. We conclude that such levels of spatial structure in the partners' populations can increase the stability of the mutualistic relationship. Indeed, the local transmission of the association enables partial alignments of the partners' interests, and population connectivity allows the plant retaliation mechanisms to be locally adapted to the castration behaviour of their symbionts. © 2016 European Society For Evolutionary Biology. Journal of Evolutionary Biology © 2016 European Society For Evolutionary Biology.

  13. Influence of Interspecific Competition and Landscape Structure on Spatial Homogenization of Avian Assemblages

    Science.gov (United States)

    Robertson, Oliver J.; McAlpine, Clive; House, Alan; Maron, Martine

    2013-01-01

    Human-induced biotic homogenization resulting from landscape change and increased competition from widespread generalists or ‘winners’, is widely recognized as a global threat to biodiversity. However, it remains unclear what aspects of landscape structure influence homogenization. This paper tests the importance of interspecific competition and landscape structure, for the spatial homogeneity of avian assemblages within a fragmented agricultural landscape of eastern Australia. We used field observations of the density of 128 diurnal bird species to calculate taxonomic and functional similarity among assemblages. We then examined whether taxonomic and functional similarity varied with patch type, the extent of woodland habitat, land-use intensity, habitat subdivision, and the presence of Manorina colonies (a competitive genus of honeyeaters). We found the presence of a Manorina colony was the most significant factor positively influencing both taxonomic and functional similarity of bird assemblages. Competition from members of this widespread genus of native honeyeater, rather than landscape structure, was the main cause of both taxonomic and functional homogenization. These species have not recently expanded their range, but rather have increased in density in response to agricultural landscape change. The negative impacts of Manorina honeyeaters on assemblage similarity were most pronounced in landscapes of moderate land-use intensity. We conclude that in these human-modified landscapes, increased competition from dominant native species, or ‘winners’, can result in homogeneous avian assemblages and the loss of specialist species. These interacting processes make biotic homogenization resulting from land-use change a global threat to biodiversity in modified agro-ecosystems. PMID:23724136

  14. Spatial Genetic Structure of the Abundant and Widespread Peatmoss Sphagnum magellanicum Brid.

    Science.gov (United States)

    Kyrkjeeide, Magni Olsen; Hassel, Kristian; Flatberg, Kjell Ivar; Shaw, A Jonathan; Yousefi, Narjes; Stenøien, Hans K

    2016-01-01

    Spore-producing organisms have small dispersal units enabling them to become widespread across continents. However, barriers to gene flow and cryptic speciation may exist. The common, haploid peatmoss Sphagnum magellanicum occurs in both the Northern and Southern hemisphere, and is commonly used as a model in studies of peatland ecology and peatmoss physiology. Even though it will likely act as a rich source in functional genomics studies in years to come, surprisingly little is known about levels of genetic variability and structuring in this species. Here, we assess for the first time how genetic variation in S. magellanicum is spatially structured across its full distribution range (Northern Hemisphere and South America). The morphologically similar species S. alaskense was included for comparison. In total, 195 plants were genotyped at 15 microsatellite loci. Sequences from two plastid loci (trnG and trnL) were obtained from 30 samples. Our results show that S. alaskense and almost all plants of S. magellanicum in the northern Pacific area are diploids and share the same gene pool. Haploid plants occur in South America, Europe, eastern North America, western North America, and southern Asia, and five genetically differentiated groups with different distribution ranges were found. Our results indicate that S. magellanicum consists of several distinct genetic groups, seemingly with little or no gene flow among them. Noteworthy, the geographical separation of diploids and haploids is strikingly similar to patterns found within other haploid Sphagnum species spanning the Northern Hemisphere. Our results confirm a genetic division between the Beringian and the Atlantic that seems to be a general pattern in Sphagnum taxa. The pattern of strong genetic population structuring throughout the distribution range of morphologically similar plants need to be considered in future functional genomic studies of S. magellanicum.

  15. Effects of spatial subsidies and habitat structure on the foraging ecology and size of geckos.

    Directory of Open Access Journals (Sweden)

    Amy A Briggs

    Full Text Available While it is well established that ecosystem subsidies--the addition of energy, nutrients, or materials across ecosystem boundaries--can affect consumer abundance, there is less information available on how subsidy levels may affect consumer diet, body condition, trophic position, and resource partitioning among consumer species. There is also little information on whether changes in vegetation structure commonly associated with spatial variation in subsidies may play an important role in driving consumer responses to subsidies. To address these knowledge gaps, we studied changes in abundance, diet, trophic position, size, and body condition of two congeneric gecko species (Lepidodactylus spp. that coexist in palm dominated and native (hereafter dicot dominated forests across the Central Pacific. These forests differ strongly both in the amount of marine subsidies that they receive from seabird guano and carcasses, and in the physical structure of the habitat. Contrary to other studies, we found that subsidy level had no impact on the abundance of either gecko species; it also did