WorldWideScience

Sample records for source software tools

  1. The Value of Open Source Software Tools in Qualitative Research

    Science.gov (United States)

    Greenberg, Gary

    2011-01-01

    In an era of global networks, researchers using qualitative methods must consider the impact of any software they use on the sharing of data and findings. In this essay, I identify researchers' main areas of concern regarding the use of qualitative software packages for research. I then examine how open source software tools, wherein the publisher…

  2. The Systems Biology Research Tool: evolvable open-source software

    Directory of Open Access Journals (Sweden)

    Wright Jeremiah

    2008-06-01

    Full Text Available Abstract Background Research in the field of systems biology requires software for a variety of purposes. Software must be used to store, retrieve, analyze, and sometimes even to collect the data obtained from system-level (often high-throughput experiments. Software must also be used to implement mathematical models and algorithms required for simulation and theoretical predictions on the system-level. Results We introduce a free, easy-to-use, open-source, integrated software platform called the Systems Biology Research Tool (SBRT to facilitate the computational aspects of systems biology. The SBRT currently performs 35 methods for analyzing stoichiometric networks and 16 methods from fields such as graph theory, geometry, algebra, and combinatorics. New computational techniques can be added to the SBRT via process plug-ins, providing a high degree of evolvability and a unifying framework for software development in systems biology. Conclusion The Systems Biology Research Tool represents a technological advance for systems biology. This software can be used to make sophisticated computational techniques accessible to everyone (including those with no programming ability, to facilitate cooperation among researchers, and to expedite progress in the field of systems biology.

  3. Commissioning software tools at the Advanced Photon Source

    International Nuclear Information System (INIS)

    Emery, L.

    1995-01-01

    A software tool-oriented approach has been adopted in the commissioning of the Advanced Photon Source (APS) at Argonne National Laboratory, particularly in the commissioning of the Positron Accumulator Ring (PAR). The general philosophy is to decompose a complicated procedure involving measurement, data processing, and control into a series of simpler steps, each accomplished by a generic toolkit program. The implementation is greatly facilitated by adopting the SDDS (self-describing data set protocol), which comes with its own toolkit. The combined toolkit has made accelerator physics measurements easier. For instance, the measurement of the optical functions of the PAR and the beamlines connected to it have been largely automated. Complicated measurements are feasible with a combination of tools running independently

  4. The Systems Biology Research Tool: evolvable open-source software

    OpenAIRE

    Wright, J; Wagner, A

    2008-01-01

    Abstract Background Research in the field of systems biology requires software for a variety of purposes. Software must be used to store, retrieve, analyze, and sometimes even to collect the data obtained from system-level (often high-throughput) experiments. Software must also be used to implement mathematical models and algorithms required for simulation and theoretical predictions on the system-level. Results We introduce a free, easy-to-use, open-source, integrated software platform calle...

  5. Educatie en open-source software: meer dan gratis tools.

    NARCIS (Netherlands)

    Bakker, de G.M.

    2008-01-01

    In het onderwijs wordt steeds meer open source software gebruikt, zo merkt ook Gijs de Bakker*. In de regel moet daar niet al te veel achtergezocht worden. 'Het is in de regel niet meer dan een slimme manier om aan gratis en doorgaans kwalitatief goede software te komen'. Wat De Bakker betreft een

  6. Survivability as a Tool for Evaluating Open Source Software

    Science.gov (United States)

    2015-06-01

    tremendously successful in certain applications such as the Mozilla Firefox web browser and the Apache web server [10]. Open source software is often...source versions (such as Internet Explorer compared to Mozilla Firefox ), which typically conclude that vulnerabilities are, in fact, much more...for radios M. Smith ACS ACS ROS autonomous functionality (none) ACS PX4 Firmware PX4 FMU driver BSD 3-clause ACS PX4 Nuttx real time OS BSD ACS

  7. An Open-Source Tool Set Enabling Analog-Digital-Software Co-Design

    Directory of Open Access Journals (Sweden)

    Michelle Collins

    2016-02-01

    Full Text Available This paper presents an analog-digital hardware-software co-design environment for simulating and programming reconfigurable systems. The tool simulates, designs, as well as enables experimental measurements after compiling to configurable systems in the same integrated design tool framework. High level software in Scilab/Xcos (open-source programs similar to MATLAB/Simulink that converts the high-level block description by the user to blif format (sci2blif, which acts as an input to the modified VPR tool, including the code v p r 2 s w c s , encoding the specific platform through specific architecture files, resulting in a targetable switch list on the resulting configurable analog–digital system. The resulting tool uses an analog and mixed-signal library of components, enabling users and future researchers access to the basic analog operations/computations that are possible.

  8. SOFTWARE OPEN SOURCE, SOFTWARE GRATIS?

    Directory of Open Access Journals (Sweden)

    Nur Aini Rakhmawati

    2006-01-01

    Full Text Available Normal 0 false false false IN X-NONE X-NONE MicrosoftInternetExplorer4 Berlakunya Undang – undang Hak Atas Kekayaan Intelektual (HAKI, memunculkan suatu alternatif baru untuk menggunakan software open source. Penggunaan software open source menyebar seiring dengan isu global pada Information Communication Technology (ICT saat ini. Beberapa organisasi dan perusahaan mulai menjadikan software open source sebagai pertimbangan. Banyak konsep mengenai software open source ini. Mulai dari software yang gratis sampai software tidak berlisensi. Tidak sepenuhnya isu software open source benar, untuk itu perlu dikenalkan konsep software open source mulai dari sejarah, lisensi dan bagaimana cara memilih lisensi, serta pertimbangan dalam memilih software open source yang ada. Kata kunci :Lisensi, Open Source, HAKI

  9. WannierTools: An open-source software package for novel topological materials

    Science.gov (United States)

    Wu, QuanSheng; Zhang, ShengNan; Song, Hai-Feng; Troyer, Matthias; Soluyanov, Alexey A.

    2018-03-01

    We present an open-source software package WannierTools, a tool for investigation of novel topological materials. This code works in the tight-binding framework, which can be generated by another software package Wannier90 (Mostofi et al., 2008). It can help to classify the topological phase of a given material by calculating the Wilson loop, and can get the surface state spectrum, which is detected by angle resolved photoemission (ARPES) and in scanning tunneling microscopy (STM) experiments. It also identifies positions of Weyl/Dirac points and nodal line structures, calculates the Berry phase around a closed momentum loop and Berry curvature in a part of the Brillouin zone (BZ).

  10. ProteoWizard: open source software for rapid proteomics tools development.

    Science.gov (United States)

    Kessner, Darren; Chambers, Matt; Burke, Robert; Agus, David; Mallick, Parag

    2008-11-01

    The ProteoWizard software project provides a modular and extensible set of open-source, cross-platform tools and libraries. The tools perform proteomics data analyses; the libraries enable rapid tool creation by providing a robust, pluggable development framework that simplifies and unifies data file access, and performs standard proteomics and LCMS dataset computations. The library contains readers and writers of the mzML data format, which has been written using modern C++ techniques and design principles and supports a variety of platforms with native compilers. The software has been specifically released under the Apache v2 license to ensure it can be used in both academic and commercial projects. In addition to the library, we also introduce a rapidly growing set of companion tools whose implementation helps to illustrate the simplicity of developing applications on top of the ProteoWizard library. Cross-platform software that compiles using native compilers (i.e. GCC on Linux, MSVC on Windows and XCode on OSX) is available for download free of charge, at http://proteowizard.sourceforge.net. This website also provides code examples, and documentation. It is our hope the ProteoWizard project will become a standard platform for proteomics development; consequently, code use, contribution and further development are strongly encouraged.

  11. Semantic integration of gene expression analysis tools and data sources using software connectors

    Science.gov (United States)

    2013-01-01

    Background The study and analysis of gene expression measurements is the primary focus of functional genomics. Once expression data is available, biologists are faced with the task of extracting (new) knowledge associated to the underlying biological phenomenon. Most often, in order to perform this task, biologists execute a number of analysis activities on the available gene expression dataset rather than a single analysis activity. The integration of heteregeneous tools and data sources to create an integrated analysis environment represents a challenging and error-prone task. Semantic integration enables the assignment of unambiguous meanings to data shared among different applications in an integrated environment, allowing the exchange of data in a semantically consistent and meaningful way. This work aims at developing an ontology-based methodology for the semantic integration of gene expression analysis tools and data sources. The proposed methodology relies on software connectors to support not only the access to heterogeneous data sources but also the definition of transformation rules on exchanged data. Results We have studied the different challenges involved in the integration of computer systems and the role software connectors play in this task. We have also studied a number of gene expression technologies, analysis tools and related ontologies in order to devise basic integration scenarios and propose a reference ontology for the gene expression domain. Then, we have defined a number of activities and associated guidelines to prescribe how the development of connectors should be carried out. Finally, we have applied the proposed methodology in the construction of three different integration scenarios involving the use of different tools for the analysis of different types of gene expression data. Conclusions The proposed methodology facilitates the development of connectors capable of semantically integrating different gene expression analysis tools

  12. BYMUR software: a free and open source tool for quantifying and visualizing multi-risk analyses

    Science.gov (United States)

    Tonini, Roberto; Selva, Jacopo

    2013-04-01

    The BYMUR software aims to provide an easy-to-use open source tool for both computing multi-risk and managing/visualizing/comparing all the inputs (e.g. hazard, fragilities and exposure) as well as the corresponding results (e.g. risk curves, risk indexes). For all inputs, a complete management of inter-model epistemic uncertainty is considered. The BYMUR software will be one of the final products provided by the homonymous ByMuR project (http://bymur.bo.ingv.it/) funded by Italian Ministry of Education, Universities and Research (MIUR), focused to (i) provide a quantitative and objective general method for a comprehensive long-term multi-risk analysis in a given area, accounting for inter-model epistemic uncertainty through Bayesian methodologies, and (ii) apply the methodology to seismic, volcanic and tsunami risks in Naples (Italy). More specifically, the BYMUR software will be able to separately account for the probabilistic hazard assessment of different kind of hazardous phenomena, the relative (time-dependent/independent) vulnerabilities and exposure data, and their possible (predefined) interactions: the software will analyze these inputs and will use them to estimate both single- and multi- risk associated to a specific target area. In addition, it will be possible to connect the software to further tools (e.g., a full hazard analysis), allowing a dynamic I/O of results. The use of Python programming language guarantees that the final software will be open source and platform independent. Moreover, thanks to the integration of some most popular and rich-featured Python scientific modules (Numpy, Matplotlib, Scipy) with the wxPython graphical user toolkit, the final tool will be equipped with a comprehensive Graphical User Interface (GUI) able to control and visualize (in the form of tables, maps and/or plots) any stage of the multi-risk analysis. The additional features of importing/exporting data in MySQL databases and/or standard XML formats (for

  13. Software Tools for Software Maintenance

    Science.gov (United States)

    1988-10-01

    COMMUNICATIONS, AND COMPUTER SCIENCES I ,(AIRMICS) FO~SOFTWARE TOOLS (.o FOR SOF1 ’ARE MAINTENANCE (ASQBG-1-89-001) October, 1988 DTIC ELECTE -ifB...SUNWW~. B..c Program An~Iysw HA.c C-Tractr C Cobol Stncturing Facility VS Cobol 11 F-Scan Foctma Futbol Cobol Fortran Sltiuc Code Anaiyaer Fortran IS

  14. Tracing catchment fine sediment sources using the new SIFT (SedIment Fingerprinting Tool) open source software.

    Science.gov (United States)

    Pulley, S; Collins, A L

    2018-09-01

    The mitigation of diffuse sediment pollution requires reliable provenance information so that measures can be targeted. Sediment source fingerprinting represents one approach for supporting these needs, but recent methodological developments have resulted in an increasing complexity of data processing methods rendering the approach less accessible to non-specialists. A comprehensive new software programme (SIFT; SedIment Fingerprinting Tool) has therefore been developed which guides the user through critical data analysis decisions and automates all calculations. Multiple source group configurations and composite fingerprints are identified and tested using multiple methods of uncertainty analysis. This aims to explore the sediment provenance information provided by the tracers more comprehensively than a single model, and allows for model configurations with high uncertainties to be rejected. This paper provides an overview of its application to an agricultural catchment in the UK to determine if the approach used can provide a reduction in uncertainty and increase in precision. Five source group classifications were used; three formed using a k-means cluster analysis containing 2, 3 and 4 clusters, and two a-priori groups based upon catchment geology. Three different composite fingerprints were used for each classification and bi-plots, range tests, tracer variability ratios and virtual mixtures tested the reliability of each model configuration. Some model configurations performed poorly when apportioning the composition of virtual mixtures, and different model configurations could produce different sediment provenance results despite using composite fingerprints able to discriminate robustly between the source groups. Despite this uncertainty, dominant sediment sources were identified, and those in close proximity to each sediment sampling location were found to be of greatest importance. This new software, by integrating recent methodological developments in

  15. An open-source software tool for the generation of relaxation time maps in magnetic resonance imaging

    International Nuclear Information System (INIS)

    Messroghli, Daniel R; Rudolph, Andre; Abdel-Aty, Hassan; Wassmuth, Ralf; Kühne, Titus; Dietz, Rainer; Schulz-Menger, Jeanette

    2010-01-01

    In magnetic resonance (MR) imaging, T1, T2 and T2* relaxation times represent characteristic tissue properties that can be quantified with the help of specific imaging strategies. While there are basic software tools for specific pulse sequences, until now there is no universal software program available to automate pixel-wise mapping of relaxation times from various types of images or MR systems. Such a software program would allow researchers to test and compare new imaging strategies and thus would significantly facilitate research in the area of quantitative tissue characterization. After defining requirements for a universal MR mapping tool, a software program named MRmap was created using a high-level graphics language. Additional features include a manual registration tool for source images with motion artifacts and a tabular DICOM viewer to examine pulse sequence parameters. MRmap was successfully tested on three different computer platforms with image data from three different MR system manufacturers and five different sorts of pulse sequences: multi-image inversion recovery T1; Look-Locker/TOMROP T1; modified Look-Locker (MOLLI) T1; single-echo T2/T2*; and multi-echo T2/T2*. Computing times varied between 2 and 113 seconds. Estimates of relaxation times compared favorably to those obtained from non-automated curve fitting. Completed maps were exported in DICOM format and could be read in standard software packages used for analysis of clinical and research MR data. MRmap is a flexible cross-platform research tool that enables accurate mapping of relaxation times from various pulse sequences. The software allows researchers to optimize quantitative MR strategies in a manufacturer-independent fashion. The program and its source code were made available as open-source software on the internet

  16. An open-source software tool for the generation of relaxation time maps in magnetic resonance imaging

    Directory of Open Access Journals (Sweden)

    Kühne Titus

    2010-07-01

    Full Text Available Abstract Background In magnetic resonance (MR imaging, T1, T2 and T2* relaxation times represent characteristic tissue properties that can be quantified with the help of specific imaging strategies. While there are basic software tools for specific pulse sequences, until now there is no universal software program available to automate pixel-wise mapping of relaxation times from various types of images or MR systems. Such a software program would allow researchers to test and compare new imaging strategies and thus would significantly facilitate research in the area of quantitative tissue characterization. Results After defining requirements for a universal MR mapping tool, a software program named MRmap was created using a high-level graphics language. Additional features include a manual registration tool for source images with motion artifacts and a tabular DICOM viewer to examine pulse sequence parameters. MRmap was successfully tested on three different computer platforms with image data from three different MR system manufacturers and five different sorts of pulse sequences: multi-image inversion recovery T1; Look-Locker/TOMROP T1; modified Look-Locker (MOLLI T1; single-echo T2/T2*; and multi-echo T2/T2*. Computing times varied between 2 and 113 seconds. Estimates of relaxation times compared favorably to those obtained from non-automated curve fitting. Completed maps were exported in DICOM format and could be read in standard software packages used for analysis of clinical and research MR data. Conclusions MRmap is a flexible cross-platform research tool that enables accurate mapping of relaxation times from various pulse sequences. The software allows researchers to optimize quantitative MR strategies in a manufacturer-independent fashion. The program and its source code were made available as open-source software on the internet.

  17. Machine Tool Software

    Science.gov (United States)

    1988-01-01

    A NASA-developed software package has played a part in technical education of students who major in Mechanical Engineering Technology at William Rainey Harper College. Professor Hack has been using (APT) Automatically Programmed Tool Software since 1969 in his CAD/CAM Computer Aided Design and Manufacturing curriculum. Professor Hack teaches the use of APT programming languages for control of metal cutting machines. Machine tool instructions are geometry definitions written in APT Language to constitute a "part program." The part program is processed by the machine tool. CAD/CAM students go from writing a program to cutting steel in the course of a semester.

  18. Sustaining an Online, Shared Community Resource for Models, Robust Open source Software Tools and Data for Volcanology - the Vhub Experience

    Science.gov (United States)

    Patra, A. K.; Valentine, G. A.; Bursik, M. I.; Connor, C.; Connor, L.; Jones, M.; Simakov, N.; Aghakhani, H.; Jones-Ivey, R.; Kosar, T.; Zhang, B.

    2015-12-01

    Over the last 5 years we have created a community collaboratory Vhub.org [Palma et al, J. App. Volc. 3:2 doi:10.1186/2191-5040-3-2] as a place to find volcanology-related resources, and a venue for users to disseminate tools, teaching resources, data, and an online platform to support collaborative efforts. As the community (current active users > 6000 from an estimated community of comparable size) embeds the tools in the collaboratory into educational and research workflows it became imperative to: a) redesign tools into robust, open source reusable software for online and offline usage/enhancement; b) share large datasets with remote collaborators and other users seamlessly with security; c) support complex workflows for uncertainty analysis, validation and verification and data assimilation with large data. The focus on tool development/redevelopment has been twofold - firstly to use best practices in software engineering and new hardware like multi-core and graphic processing units. Secondly we wish to enhance capabilities to support inverse modeling, uncertainty quantification using large ensembles and design of experiments, calibration, validation. Among software engineering practices we practice are open source facilitating community contributions, modularity and reusability. Our initial targets are four popular tools on Vhub - TITAN2D, TEPHRA2, PUFF and LAVA. Use of tools like these requires many observation driven data sets e.g. digital elevation models of topography, satellite imagery, field observations on deposits etc. These data are often maintained in private repositories that are privately shared by "sneaker-net". As a partial solution to this we tested mechanisms using irods software for online sharing of private data with public metadata and access limits. Finally, we adapted use of workflow engines (e.g. Pegasus) to support the complex data and computing workflows needed for usage like uncertainty quantification for hazard analysis using physical

  19. Biogem: an effective tool based approach for scaling up open source software development in bioinformatics

    NARCIS (Netherlands)

    Bonnal, R.J.P.; Smant, G.; Prins, J.C.P.

    2012-01-01

    Biogem provides a software development environment for the Ruby programming language, which encourages community-based software development for bioinformatics while lowering the barrier to entry and encouraging best practices. Biogem, with its targeted modular and decentralized approach, software

  20. Open Source Software Development

    Science.gov (United States)

    2011-01-01

    appropriate to refer to FOSS or FLOSS (L for Libre , where the alternative term “ libre software ” has popularity in some parts of the world) in order...Applying Social Network Analysis to Community-Drive Libre Software Projects, Intern. J. Info. Tech. and Web Engineering, 2006, 1(3), 27-28. 17...Open Source Software Development* Walt Scacchi Institute for Software Researcher University of California, Irvine Irvine, CA 92697-3455 USA Abstract

  1. A new software for deformation source optimization, the Bayesian Earthquake Analysis Tool (BEAT)

    Science.gov (United States)

    Vasyura-Bathke, H.; Dutta, R.; Jonsson, S.; Mai, P. M.

    2017-12-01

    Modern studies of crustal deformation and the related source estimation, including magmatic and tectonic sources, increasingly use non-linear optimization strategies to estimate geometric and/or kinematic source parameters and often consider both jointly, geodetic and seismic data. Bayesian inference is increasingly being used for estimating posterior distributions of deformation source model parameters, given measured/estimated/assumed data and model uncertainties. For instance, some studies consider uncertainties of a layered medium and propagate these into source parameter uncertainties, while others use informative priors to reduce the model parameter space. In addition, innovative sampling algorithms have been developed to efficiently explore the high-dimensional parameter spaces. Compared to earlier studies, these improvements have resulted in overall more robust source model parameter estimates that include uncertainties. However, the computational burden of these methods is high and estimation codes are rarely made available along with the published results. Even if the codes are accessible, it is usually challenging to assemble them into a single optimization framework as they are typically coded in different programing languages. Therefore, further progress and future applications of these methods/codes are hampered, while reproducibility and validation of results has become essentially impossible. In the spirit of providing open-access and modular codes to facilitate progress and reproducible research in deformation source estimations, we undertook the effort of developing BEAT, a python package that comprises all the above-mentioned features in one single programing environment. The package builds on the pyrocko seismological toolbox (www.pyrocko.org), and uses the pymc3 module for Bayesian statistical model fitting. BEAT is an open-source package (https://github.com/hvasbath/beat), and we encourage and solicit contributions to the project. Here, we

  2. Open Source Software Acquisition

    DEFF Research Database (Denmark)

    Holck, Jesper; Kühn Pedersen, Mogens; Holm Larsen, Michael

    2005-01-01

    Lately we have seen a growing interest from both public and private organisations to adopt OpenSource Software (OSS), not only for a few, specific applications but also on a more general levelthroughout the organisation. As a consequence, the organisations' decisions on adoption of OSS arebecoming...

  3. FREEWAT: FREE and open source software tools for WATer resource management

    OpenAIRE

    Rossetto, Rudy; Borsi, Iacopo; Foglia, Laura

    2015-01-01

    FREEWAT is an HORIZON 2020 project financed by the EU Commission under the call WATER INNOVATION: BOOSTING ITS VALUE FOR EUROPE. FREEWAT main result will be an open source and public domain GIS integrated modelling environment for the simulation of water quantity and quality in surface water and groundwater with an integrated water management and planning module. FREEWAT aims at promoting water resource management by simplifying the application of the Water Framework Directive and other EU wa...

  4. Neurophysiological analytics for all! Free open-source software tools for documenting, analyzing, visualizing, and sharing using electronic notebooks.

    Science.gov (United States)

    Rosenberg, David M; Horn, Charles C

    2016-08-01

    Neurophysiology requires an extensive workflow of information analysis routines, which often includes incompatible proprietary software, introducing limitations based on financial costs, transfer of data between platforms, and the ability to share. An ecosystem of free open-source software exists to fill these gaps, including thousands of analysis and plotting packages written in Python and R, which can be implemented in a sharable and reproducible format, such as the Jupyter electronic notebook. This tool chain can largely replace current routines by importing data, producing analyses, and generating publication-quality graphics. An electronic notebook like Jupyter allows these analyses, along with documentation of procedures, to display locally or remotely in an internet browser, which can be saved as an HTML, PDF, or other file format for sharing with team members and the scientific community. The present report illustrates these methods using data from electrophysiological recordings of the musk shrew vagus-a model system to investigate gut-brain communication, for example, in cancer chemotherapy-induced emesis. We show methods for spike sorting (including statistical validation), spike train analysis, and analysis of compound action potentials in notebooks. Raw data and code are available from notebooks in data supplements or from an executable online version, which replicates all analyses without installing software-an implementation of reproducible research. This demonstrates the promise of combining disparate analyses into one platform, along with the ease of sharing this work. In an age of diverse, high-throughput computational workflows, this methodology can increase efficiency, transparency, and the collaborative potential of neurophysiological research. Copyright © 2016 the American Physiological Society.

  5. Software engineering methodologies and tools

    Science.gov (United States)

    Wilcox, Lawrence M.

    1993-01-01

    Over the years many engineering disciplines have developed, including chemical, electronic, etc. Common to all engineering disciplines is the use of rigor, models, metrics, and predefined methodologies. Recently, a new engineering discipline has appeared on the scene, called software engineering. For over thirty years computer software has been developed and the track record has not been good. Software development projects often miss schedules, are over budget, do not give the user what is wanted, and produce defects. One estimate is there are one to three defects per 1000 lines of deployed code. More and more systems are requiring larger and more complex software for support. As this requirement grows, the software development problems grow exponentially. It is believed that software quality can be improved by applying engineering principles. Another compelling reason to bring the engineering disciplines to software development is productivity. It has been estimated that productivity of producing software has only increased one to two percent a year in the last thirty years. Ironically, the computer and its software have contributed significantly to the industry-wide productivity, but computer professionals have done a poor job of using the computer to do their job. Engineering disciplines and methodologies are now emerging supported by software tools that address the problems of software development. This paper addresses some of the current software engineering methodologies as a backdrop for the general evaluation of computer assisted software engineering (CASE) tools from actual installation of and experimentation with some specific tools.

  6. Development of a web GIS application for emissions inventory spatial allocation based on open source software tools

    Science.gov (United States)

    Gkatzoflias, Dimitrios; Mellios, Giorgos; Samaras, Zissis

    2013-03-01

    Combining emission inventory methods and geographic information systems (GIS) remains a key issue for environmental modelling and management purposes. This paper examines the development of a web GIS application as part of an emission inventory system that produces maps and files with spatial allocated emissions in a grid format. The study is not confined in the maps produced but also presents the features and capabilities of a web application that can be used by every user even without any prior knowledge of the GIS field. The development of the application was based on open source software tools such as MapServer for the GIS functions, PostgreSQL and PostGIS for the data management and HTML, PHP and JavaScript as programming languages. In addition, background processes are used in an innovative manner to handle the time consuming and computational costly procedures of the application. Furthermore, a web map service was created to provide maps to other clients such as the Google Maps API v3 that is used as part of the user interface. The output of the application includes maps in vector and raster format, maps with temporal resolution on daily and hourly basis, grid files that can be used by air quality management systems and grid files consistent with the European Monitoring and Evaluation Programme Grid. Although the system was developed and validated for the Republic of Cyprus covering a remarkable wide range of pollutant and emissions sources, it can be easily customized for use in other countries or smaller areas, as long as geospatial and activity data are available.

  7. Toxicity Estimation Software Tool (TEST)

    Science.gov (United States)

    The Toxicity Estimation Software Tool (TEST) was developed to allow users to easily estimate the toxicity of chemicals using Quantitative Structure Activity Relationships (QSARs) methodologies. QSARs are mathematical models used to predict measures of toxicity from the physical c...

  8. Open source software and libraries

    OpenAIRE

    Randhawa, Sukhwinder

    2008-01-01

    Open source software is, software that users have the ability to run, copy, distribute, study, change, share and improve for any purpose. Open source library software’s does not need the initial cost of commercial software and enables libraries to have greater control over their working environment. Library professionals should be aware of the advantages of open source software and should involve in their development. They should have basic knowledge about the selection, installation and main...

  9. Software development an open source approach

    CERN Document Server

    Tucker, Allen; de Silva, Chamindra

    2011-01-01

    Overview and Motivation Software Free and Open Source Software (FOSS)Two Case Studies Working with a Project Team Key FOSS Activities Client-Oriented vs. Community-Oriented Projects Working on a Client-Oriented Project Joining a Community-Oriented Project Using Project Tools Collaboration Tools Code Management Tools Run-Time System ConstraintsSoftware Architecture Architectural Patterns Layers, Cohesion, and Coupling Security Concurrency, Race Conditions, and DeadlocksWorking with Code Bad Smells and Metrics Refactoring Testing Debugging Extending the Software for a New ProjectDeveloping the D

  10. Open source clustering software.

    Science.gov (United States)

    de Hoon, M J L; Imoto, S; Nolan, J; Miyano, S

    2004-06-12

    We have implemented k-means clustering, hierarchical clustering and self-organizing maps in a single multipurpose open-source library of C routines, callable from other C and C++ programs. Using this library, we have created an improved version of Michael Eisen's well-known Cluster program for Windows, Mac OS X and Linux/Unix. In addition, we generated a Python and a Perl interface to the C Clustering Library, thereby combining the flexibility of a scripting language with the speed of C. The C Clustering Library and the corresponding Python C extension module Pycluster were released under the Python License, while the Perl module Algorithm::Cluster was released under the Artistic License. The GUI code Cluster 3.0 for Windows, Macintosh and Linux/Unix, as well as the corresponding command-line program, were released under the same license as the original Cluster code. The complete source code is available at http://bonsai.ims.u-tokyo.ac.jp/mdehoon/software/cluster. Alternatively, Algorithm::Cluster can be downloaded from CPAN, while Pycluster is also available as part of the Biopython distribution.

  11. An open source software tool to assign the material properties of bone for ABAQUS finite element simulations.

    Science.gov (United States)

    Pegg, Elise C; Gill, Harinderjit S

    2016-09-06

    A new software tool to assign the material properties of bone to an ABAQUS finite element mesh was created and compared with Bonemat, a similar tool originally designed to work with Ansys finite element models. Our software tool (py_bonemat_abaqus) was written in Python, which is the chosen scripting language for ABAQUS. The purpose of this study was to compare the software packages in terms of the material assignment calculation and processing speed. Three element types were compared (linear hexahedral (C3D8), linear tetrahedral (C3D4) and quadratic tetrahedral elements (C3D10)), both individually and as part of a mesh. Comparisons were made using a CT scan of a hemi-pelvis as a test case. A small difference, of -0.05kPa on average, was found between Bonemat version 3.1 (the current version) and our Python package. Errors were found in the previous release of Bonemat (version 3.0 downloaded from www.biomedtown.org) during calculation of the quadratic tetrahedron Jacobian, and conversion of the apparent density to modulus when integrating over the Young׳s modulus field. These issues caused up to 2GPa error in the modulus assignment. For these reasons, we recommend users upgrade to the most recent release of Bonemat. Processing speeds were assessed for the three different element types. Our Python package took significantly longer (110s on average) to perform the calculations compared with the Bonemat software (10s). Nevertheless, the workflow advantages of the package and added functionality makes 'py_bonemat_abaqus' a useful tool for ABAQUS users. Copyright © 2016 Elsevier Ltd. All rights reserved.

  12. Software Tools Streamline Project Management

    Science.gov (United States)

    2009-01-01

    Three innovative software inventions from Ames Research Center (NETMARK, Program Management Tool, and Query-Based Document Management) are finding their way into NASA missions as well as industry applications. The first, NETMARK, is a program that enables integrated searching of data stored in a variety of databases and documents, meaning that users no longer have to look in several places for related information. NETMARK allows users to search and query information across all of these sources in one step. This cross-cutting capability in information analysis has exponentially reduced the amount of time needed to mine data from days or weeks to mere seconds. NETMARK has been used widely throughout NASA, enabling this automatic integration of information across many documents and databases. NASA projects that use NETMARK include the internal reporting system and project performance dashboard, Erasmus, NASA s enterprise management tool, which enhances organizational collaboration and information sharing through document routing and review; the Integrated Financial Management Program; International Space Station Knowledge Management; Mishap and Anomaly Information Reporting System; and management of the Mars Exploration Rovers. Approximately $1 billion worth of NASA s projects are currently managed using Program Management Tool (PMT), which is based on NETMARK. PMT is a comprehensive, Web-enabled application tool used to assist program and project managers within NASA enterprises in monitoring, disseminating, and tracking the progress of program and project milestones and other relevant resources. The PMT consists of an integrated knowledge repository built upon advanced enterprise-wide database integration techniques and the latest Web-enabled technologies. The current system is in a pilot operational mode allowing users to automatically manage, track, define, update, and view customizable milestone objectives and goals. The third software invention, Query

  13. Perspectives on Open Source Software

    National Research Council Canada - National Science Library

    Hissam, Scott

    2001-01-01

    Open source software (OSS) is emerging as the software community's next "silver bullet" and appears to be playing a significant role in the acquisition and development plans of the Department of Defense (DoD) and industry...

  14. Converging free and open source software tools for knowledge sharing in smallholder agricultural communities in Sri Lanka

    Directory of Open Access Journals (Sweden)

    Chandana Kumara Jayathilake

    2017-12-01

    Full Text Available In a world where the notion of ‘sharing of knowledge’ has been gained much prominence in the recent past, the importance of information and communications technologies (ICTs to promote sustainable agriculture, especially when combined with mobile and open source software technologies is discussed critically. On this rationale, this study was carried out to explore the applicability of the concept of converging ‘Free and Open Source Software (FOSS’ to promote sustainable knowledge sharing amongst the agricultural communities in Sri Lanka. A multi-stage community consultative process with a set of designated officials (“Sponsors” and a series of semi-structured questionnaire survey with a cross section of smallholder agriculture farmers (n=246, were carried out in the Batticaloa, Kurunegala and Puttalam districts to gather the baseline data. This was followed by a number of field experiments (“Campaigns” with the farmers (n=340 from same geographical areas. The two FOSS, namely: (1 “FrontlineSMS” for ‘Text Messaging’ and (2 “FreedomFone” for ‘Interactive Voice Responses’, were applied to evaluate the effectiveness of knowledge sharing within the farming communities. It was found that FOSS intervention increases the ‘Text messaging’ and ‘Voice Call’ usage in day-to-day agricultural communication by 26 and 8 percent, respectively. The demographic factors like age and income level of the farmers has positively influence on the knowledge sharing process. And also the ‘Mobile Telephony’ was the most extensive mode of communication within the communities. The outcome of analysis, as a whole, implies that, with a fitting mechanism in place, this approach can be promoted as a “drive for positive changes” in agriculture-based rural communities in developing countries like Sri Lanka, and those in South and East Asia with similar socio-economic and cultural perspectives.

  15. Evaluation of three methods for retrospective correction of vignetting on medical microscopy images utilizing two open source software tools.

    Science.gov (United States)

    Babaloukas, Georgios; Tentolouris, Nicholas; Liatis, Stavros; Sklavounou, Alexandra; Perrea, Despoina

    2011-12-01

    Correction of vignetting on images obtained by a digital camera mounted on a microscope is essential before applying image analysis. The aim of this study is to evaluate three methods for retrospective correction of vignetting on medical microscopy images and compare them with a prospective correction method. One digital image from four different tissues was used and a vignetting effect was applied on each of these images. The resulted vignetted image was replicated four times and in each replica a different method for vignetting correction was applied with fiji and gimp software tools. The highest peak signal-to-noise ratio from the comparison of each method to the original image was obtained from the prospective method in all tissues. The morphological filtering method provided the highest peak signal-to-noise ratio value amongst the retrospective methods. The prospective method is suggested as the method of choice for correction of vignetting and if it is not applicable, then the morphological filtering may be suggested as the retrospective alternative method. © 2011 The Authors Journal of Microscopy © 2011 Royal Microscopical Society.

  16. Software architecture analysis tool : software architecture metrics collection

    NARCIS (Netherlands)

    Muskens, J.; Chaudron, M.R.V.; Westgeest, R.

    2002-01-01

    The Software Engineering discipline lacks the ability to evaluate software architectures. Here we describe a tool for software architecture analysis that is based on metrics. Metrics can be used to detect possible problems and bottlenecks in software architectures. Even though metrics do not give a

  17. Design of parametric software tools

    DEFF Research Database (Denmark)

    Sabra, Jakob Borrits; Mullins, Michael

    2011-01-01

    The studies investigate the field of evidence-based design used in architectural design practice and propose a method using 2D/3D CAD applications to: 1) enhance integration of evidence-based design knowledge in architectural design phases with a focus on lighting and interior design and 2) assess...... fulfilment of evidence-based design criterion regarding light distribution and location in relation to patient safety in architectural health care design proposals. The study uses 2D/3D CAD modelling software Rhinoceros 3D with plug-in Grasshopper to create parametric tool prototypes to exemplify...... the operations and functions of the design method. To evaluate the prototype potentials, surveys with architectural and healthcare design companies are conducted. Evaluation is done by the administration of questionnaires being part of the development of the tools. The results show that architects, designers...

  18. Tools for Embedded Computing Systems Software

    Science.gov (United States)

    1978-01-01

    A workshop was held to assess the state of tools for embedded systems software and to determine directions for tool development. A synopsis of the talk and the key figures of each workshop presentation, together with chairmen summaries, are presented. The presentations covered four major areas: (1) tools and the software environment (development and testing); (2) tools and software requirements, design, and specification; (3) tools and language processors; and (4) tools and verification and validation (analysis and testing). The utility and contribution of existing tools and research results for the development and testing of embedded computing systems software are described and assessed.

  19. Improvement of Computer Software Quality through Software Automated Tools.

    Science.gov (United States)

    1986-08-30

    information that are returned from the tools to the human user, and the forms in which these outputs are presented. Page 2 of 4 STAGE OF DEVELOPMENT: What... AUTOMIATED SOFTWARE TOOL MONITORING SYSTEM APPENDIX 2 2-1 INTRODUCTION This document and Automated Software Tool Monitoring Program (Appendix 1) are...t Output Output features provide links from the tool to both the human user and the target machine (where applicable). They describe the types

  20. When to make proprietary software open source

    NARCIS (Netherlands)

    Caulkins, J.P.; Feichtinger, G.; Grass, D.; Hartl, R.F.; Kort, P.M.; Seidl, A.

    Software can be distributed closed source (proprietary) or open source (developed collaboratively). While a firm cannot sell open source software, and so loses potential sales revenue, the open source software development process can have a substantial positive impact on the quality of a software,

  1. Structure and software tools of AIDA.

    Science.gov (United States)

    Duisterhout, J S; Franken, B; Witte, F

    1987-01-01

    AIDA consists of a set of software tools to allow for fast development and easy-to-maintain Medical Information Systems. AIDA supports all aspects of such a system both during development and operation. It contains tools to build and maintain forms for interactive data entry and on-line input validation, a database management system including a data dictionary and a set of run-time routines for database access, and routines for querying the database and output formatting. Unlike an application generator, the user of AIDA may select parts of the tools to fulfill his needs and program other subsystems not developed with AIDA. The AIDA software uses as host language the ANSI-standard programming language MUMPS, an interpreted language embedded in an integrated database and programming environment. This greatly facilitates the portability of AIDA applications. The database facilities supported by AIDA are based on a relational data model. This data model is built on top of the MUMPS database, the so-called global structure. This relational model overcomes the restrictions of the global structure regarding string length. The global structure is especially powerful for sorting purposes. Using MUMPS as a host language allows the user an easy interface between user-defined data validation checks or other user-defined code and the AIDA tools. AIDA has been designed primarily for prototyping and for the construction of Medical Information Systems in a research environment which requires a flexible approach. The prototyping facility of AIDA operates terminal independent and is even to a great extent multi-lingual. Most of these features are table-driven; this allows on-line changes in the use of terminal type and language, but also causes overhead. AIDA has a set of optimizing tools by which it is possible to build a faster, but (of course) less flexible code from these table definitions. By separating the AIDA software in a source and a run-time version, one is able to write

  2. Usability in open source software development

    DEFF Research Database (Denmark)

    Andreasen, M. S.; Nielsen, H. V.; Schrøder, S. O.

    2006-01-01

    Open Source Software (OSS) development has gained significant importance in the production of soft-ware products. Open Source Software developers have produced systems with a functionality that is competitive with similar proprietary software developed by commercial software organizations. Yet OSS...

  3. Tools & training for more secure software

    CERN Multimedia

    CERN. Geneva

    2017-01-01

    Just by fate of nature, software today is shipped out as “beta”, coming with vulnerabilities and weaknesses, which should already have been fixed at the programming stage. This presentation will show the consequences of suboptimal software, why good programming, thorough software design, and a proper software development process is imperative for the overall security of the Organization, and how a few simple tools and training are supposed to make CERN software more secure.

  4. Web accessibility and open source software.

    Science.gov (United States)

    Obrenović, Zeljko

    2009-07-01

    A Web browser provides a uniform user interface to different types of information. Making this interface universally accessible and more interactive is a long-term goal still far from being achieved. Universally accessible browsers require novel interaction modalities and additional functionalities, for which existing browsers tend to provide only partial solutions. Although functionality for Web accessibility can be found as open source and free software components, their reuse and integration is complex because they were developed in diverse implementation environments, following standards and conventions incompatible with the Web. To address these problems, we have started several activities that aim at exploiting the potential of open-source software for Web accessibility. The first of these activities is the development of Adaptable Multi-Interface COmmunicator (AMICO):WEB, an infrastructure that facilitates efficient reuse and integration of open source software components into the Web environment. The main contribution of AMICO:WEB is in enabling the syntactic and semantic interoperability between Web extension mechanisms and a variety of integration mechanisms used by open source and free software components. Its design is based on our experiences in solving practical problems where we have used open source components to improve accessibility of rich media Web applications. The second of our activities involves improving education, where we have used our platform to teach students how to build advanced accessibility solutions from diverse open-source software. We are also partially involved in the recently started Eclipse projects called Accessibility Tools Framework (ACTF), the aim of which is development of extensible infrastructure, upon which developers can build a variety of utilities that help to evaluate and enhance the accessibility of applications and content for people with disabilities. In this article we briefly report on these activities.

  5. Refurbishment and open source software

    CSIR Research Space (South Africa)

    Mabuza, S

    2006-11-01

    Full Text Available  & Open Source Software Electronic Waste Management Conference 2006 Sibongile Mabuza 2 Presentation Outline  About Meraka Institute Open Source Centre  Background to OSS  Extending life span using OSS  Different choices for different situations  Examples of... = common grazing ground (Sesotho)  Shared space for creative productivity  Emphasise African nature of scope and needs 4 Meraka Open Source Centre  Open Source Centre is part of the Meraka  Institute.  Currently, there are two offices:  CSIR headquarters  Soweto  Set up to amplify the beneficial impact of...

  6. From Open Source Software to Open Source Hardware

    OpenAIRE

    Viseur , Robert

    2012-01-01

    Part 2: Lightning Talks; International audience; The open source software principles progressively give rise to new initiatives for culture (free culture), data (open data) or hardware (open hardware). The open hardware is experiencing a significant growth but the business models and legal aspects are not well known. This paper is dedicated to the economics of open hardware. We define the open hardware concept and determine intellectual property tools we can apply to open hardware, with a str...

  7. FFI: A software tool for ecological monitoring

    Science.gov (United States)

    Duncan C. Lutes; Nathan C. Benson; MaryBeth Keifer; John F. Caratti; S. Austin Streetman

    2009-01-01

    A new monitoring tool called FFI (FEAT/FIREMON Integrated) has been developed to assist managers with collection, storage and analysis of ecological information. The tool was developed through the complementary integration of two fire effects monitoring systems commonly used in the United States: FIREMON and the Fire Ecology Assessment Tool. FFI provides software...

  8. Software Tools for Development on the Peregrine System | High-Performance

    Science.gov (United States)

    Computing | NREL Software Tools for Development on the Peregrine System Software Tools for and manage software at the source code level. Cross-Platform Make and SCons The "Cross-Platform Make" (CMake) package is from Kitware, and SCons is a modern software build tool based on Python

  9. Texas traffic thermostat software tool.

    Science.gov (United States)

    2013-04-01

    The traffic thermostat decision tool is built to help guide the user through a logical, step-wise, process of examining potential changes to their Manage Lane/toll facility. : **NOTE: Project Title: Application of the Traffic Thermostat Framework. Ap...

  10. Requirements Specification for Open Source Software Selection

    OpenAIRE

    YANG, YING

    2008-01-01

    Open source software has been widely used. The software world is enjoying the advantages of collaboration and cooperation in software development and use with the advent of open source movement. However, little research is concerned about the practical guidelines of OSS selection. It is hard for an organization to make a decision whether they should use the OSS or not, and to select an appropriate one from a number of OSS candidates. This thesis studies how to select an open source software f...

  11. Tool Support for Software Lookup Table Optimization

    Directory of Open Access Journals (Sweden)

    Chris Wilcox

    2011-01-01

    Full Text Available A number of scientific applications are performance-limited by expressions that repeatedly call costly elementary functions. Lookup table (LUT optimization accelerates the evaluation of such functions by reusing previously computed results. LUT methods can speed up applications that tolerate an approximation of function results, thereby achieving a high level of fuzzy reuse. One problem with LUT optimization is the difficulty of controlling the tradeoff between performance and accuracy. The current practice of manual LUT optimization adds programming effort by requiring extensive experimentation to make this tradeoff, and such hand tuning can obfuscate algorithms. In this paper we describe a methodology and tool implementation to improve the application of software LUT optimization. Our Mesa tool implements source-to-source transformations for C or C++ code to automate the tedious and error-prone aspects of LUT generation such as domain profiling, error analysis, and code generation. We evaluate Mesa with five scientific applications. Our results show a performance improvement of 3.0× and 6.9× for two molecular biology algorithms, 1.4× for a molecular dynamics program, 2.1× to 2.8× for a neural network application, and 4.6× for a hydrology calculation. We find that Mesa enables LUT optimization with more control over accuracy and less effort than manual approaches.

  12. Software tool for portal dosimetry research.

    Science.gov (United States)

    Vial, P; Hunt, P; Greer, P B; Oliver, L; Baldock, C

    2008-09-01

    This paper describes a software tool developed for research into the use of an electronic portal imaging device (EPID) to verify dose for intensity modulated radiation therapy (IMRT) beams. A portal dose image prediction (PDIP) model that predicts the EPID response to IMRT beams has been implemented into a commercially available treatment planning system (TPS). The software tool described in this work was developed to modify the TPS PDIP model by incorporating correction factors into the predicted EPID image to account for the difference in EPID response to open beam radiation and multileaf collimator (MLC) transmitted radiation. The processes performed by the software tool include; i) read the MLC file and the PDIP from the TPS, ii) calculate the fraction of beam-on time that each point in the IMRT beam is shielded by MLC leaves, iii) interpolate correction factors from look-up tables, iv) create a corrected PDIP image from the product of the original PDIP and the correction factors and write the corrected image to file, v) display, analyse, and export various image datasets. The software tool was developed using the Microsoft Visual Studio.NET framework with the C# compiler. The operation of the software tool was validated. This software provided useful tools for EPID dosimetry research, and it is being utilised and further developed in ongoing EPID dosimetry and IMRT dosimetry projects.

  13. Open source in Finnish software companies

    OpenAIRE

    Seppä, Arto

    2006-01-01

    This paper explores survey data focusing on open source software supply collected from 170 Finnish software firms using descriptive statistical analysis. The first half of the report contains general data about software companies and the differences between proprietary and open source firms. The second half focuses on open source firms. A subject of analysis are copyrights, products and services supply, the firms’ relationships with the open source community, and their views on opportunities ...

  14. A Software Tool for Legal Drafting

    Directory of Open Access Journals (Sweden)

    Daniel Gorín

    2011-09-01

    Full Text Available Although many attempts at automated aids for legal drafting have been made, they were based on the construction of a new tool, completely from scratch. This is at least curious, considering that a strong parallelism can be established between a normative document and a software specification: both describe what an entity should or should not do, can or cannot do. In this article we compare normative documents and software specifications to find out their similarities and differences. The comparison shows that there are distinctive particularities, but they are restricted to a very specific subclass of normative propositions. The rest, we postulate, can be dealt with software tools. For such an enterprise the FormaLex tool set was devised: an LTL-based language and companion tools that utilize model checking to find out normative incoherences in regulations, contracts and other legal documents. A feature-rich case study is analyzed with the presented tools.

  15. PISCES: A Tool for Predicting Software Testability

    Science.gov (United States)

    Voas, Jeffrey M.; Miller, Keith W.; Payne, Jeffery E.

    1991-01-01

    Before a program can fail, a software fault must be executed, that execution must alter the data state, and the incorrect data state must propagate to a state that results directly in an incorrect output. This paper describes a tool called PISCES (developed by Reliable Software Technologies Corporation) for predicting the probability that faults in a particular program location will accomplish all three of these steps causing program failure. PISCES is a tool that is used during software verification and validation to predict a program's testability.

  16. Free for All: Open Source Software

    Science.gov (United States)

    Schneider, Karen

    2008-01-01

    Open source software has become a catchword in libraryland. Yet many remain unclear about open source's benefits--or even what it is. So what is open source software (OSS)? It's software that is free in every sense of the word: free to download, free to use, and free to view or modify. Most OSS is distributed on the Web and one doesn't need to…

  17. Free software and open source databases

    Directory of Open Access Journals (Sweden)

    Napoleon Alexandru SIRITEANU

    2006-01-01

    Full Text Available The emergence of free/open source software -FS/OSS- enterprises seeks to push software development out of the academic stream into the commercial mainstream, and as a result, end-user applications such as open source database management systems (PostgreSQL, MySQL, Firebird are becoming more popular. Companies like Sybase, Oracle, Sun, IBM are increasingly implementing open source strategies and porting programs/applications into the Linux environment. Open source software is redefining the software industry in general and database development in particular.

  18. Intellectual Property Protection of Software – At the Crossroads of Software Patents and Open Source Software

    OpenAIRE

    Tantarimäki, Maria

    2018-01-01

    The thesis considers the intellectual property protection of software in Europe and in the US, which is increasingly important subject as the world is globalizing and digitalizing. The special nature of software has challenges the intellectual property rights. The current protection of software is based on copyright protection but in this thesis, two other options are considered: software patents and open source software. Software patents provide strong protection for software whereas the pur...

  19. Benchmarking State-of-the-Art Deep Learning Software Tools

    OpenAIRE

    Shi, Shaohuai; Wang, Qiang; Xu, Pengfei; Chu, Xiaowen

    2016-01-01

    Deep learning has been shown as a successful machine learning method for a variety of tasks, and its popularity results in numerous open-source deep learning software tools. Training a deep network is usually a very time-consuming process. To address the computational challenge in deep learning, many tools exploit hardware features such as multi-core CPUs and many-core GPUs to shorten the training time. However, different tools exhibit different features and running performance when training ...

  20. Software tool for physics chart checks.

    Science.gov (United States)

    Li, H Harold; Wu, Yu; Yang, Deshan; Mutic, Sasa

    2014-01-01

    Physics chart check has long been a central quality assurance (QC) measure in radiation oncology. The purpose of this work is to describe a software tool that aims to accomplish simplification, standardization, automation, and forced functions in the process. Nationally recognized guidelines, including American College of Radiology and American Society for Radiation Oncology guidelines and technical standards, and the American Association of Physicists in Medicine Task Group reports were identified, studied, and summarized. Meanwhile, the reported events related to physics chart check service were analyzed using an event reporting and learning system. A number of shortfalls in the chart check process were identified. To address these problems, a software tool was designed and developed under Microsoft. Net in C# to hardwire as many components as possible at each stage of the process. The software consists of the following 4 independent modules: (1) chart check management; (2) pretreatment and during treatment chart check assistant; (3) posttreatment chart check assistant; and (4) quarterly peer-review management. The users were a large group of physicists in the author's radiation oncology clinic. During over 1 year of use the tool has proven very helpful in chart checking management, communication, documentation, and maintaining consistency. The software tool presented in this work aims to assist physicists at each stage of the physics chart check process. The software tool is potentially useful for any radiation oncology clinics that are either in the process of pursuing or maintaining the American College of Radiology accreditation.

  1. Tool Use Within NASA Software Quality Assurance

    Science.gov (United States)

    Shigeta, Denise; Port, Dan; Nikora, Allen P.; Wilf, Joel

    2013-01-01

    As space mission software systems become larger and more complex, it is increasingly important for the software assurance effort to have the ability to effectively assess both the artifacts produced during software system development and the development process itself. Conceptually, assurance is a straightforward idea - it is the result of activities carried out by an organization independent of the software developers to better inform project management of potential technical and programmatic risks, and thus increase management's confidence in the decisions they ultimately make. In practice, effective assurance for large, complex systems often entails assessing large, complex software artifacts (e.g., requirements specifications, architectural descriptions) as well as substantial amounts of unstructured information (e.g., anomaly reports resulting from testing activities during development). In such an environment, assurance engineers can benefit greatly from appropriate tool support. In order to do so, an assurance organization will need accurate and timely information on the tool support available for various types of assurance activities. In this paper, we investigate the current use of tool support for assurance organizations within NASA, and describe on-going work at JPL for providing assurance organizations with the information about tools they need to use them effectively.

  2. Code Forking, Governance, and Sustainability in Open Source Software

    OpenAIRE

    Juho Lindman; Linus Nyman

    2013-01-01

    The right to fork open source code is at the core of open source licensing. All open source licenses grant the right to fork their code, that is to start a new development effort using an existing code as its base. Thus, code forking represents the single greatest tool available for guaranteeing sustainability in open source software. In addition to bolstering program sustainability, code forking directly affects the governance of open source initiatives. Forking, and even the mere possibilit...

  3. Open source software development : some historical perspectives

    NARCIS (Netherlands)

    Nuvolari, A.

    2005-01-01

    In this paper we suggest that historical studies of technology can help us to account for some, perplexing (at least for traditional economic reasoning) features of open source software development. From a historical perspective, open source software seems to be a particular case of what Robert C.

  4. Open source software development : some historical perspectives

    NARCIS (Netherlands)

    Nuvolari, A.

    2003-01-01

    In this paper we suggest that historical studies of technology can help us to account for some, perplexing (at least for traditional economic reasoning) features of open source software development. When looked in historical perspective, open source software seems to be a particular case of what

  5. Analysis of open source GIS software

    OpenAIRE

    Božnis, Andrius

    2006-01-01

    GIS is one of the most perspective information technology sciences sphere. GIS conjuncts the digital image analysis and data base systems. This makes GIS wide applicable and very high skills demanding system. There is a lot of commercial GIS software which is well advertised and which functionality is pretty well known, while open source software is forgotten. In this diploma work is made analysis of available open source GIS software on the Internet, in the scope of different projects interr...

  6. Practical open source software for libraries

    CERN Document Server

    Engard, Nicole

    2010-01-01

    Open source refers to an application whose source code is made available for use or modification as users see fit. This means libraries gain more flexibility and freedom than with software purchased with license restrictions. Both the open source community and the library world live by the same rules and principles. Practical Open Source Software for Libraries explains the facts and dispels myths about open source. Chapters introduce librarians to open source and what it means for libraries. The reader is provided with links to a toolbox full of freely available open source products to use in

  7. Software project management tools in global software development: a systematic mapping study.

    Science.gov (United States)

    Chadli, Saad Yasser; Idri, Ali; Ros, Joaquín Nicolás; Fernández-Alemán, José Luis; de Gea, Juan M Carrillo; Toval, Ambrosio

    2016-01-01

    Global software development (GSD) which is a growing trend in the software industry is characterized by a highly distributed environment. Performing software project management (SPM) in such conditions implies the need to overcome new limitations resulting from cultural, temporal and geographic separation. The aim of this research is to discover and classify the various tools mentioned in literature that provide GSD project managers with support and to identify in what way they support group interaction. A systematic mapping study has been performed by means of automatic searches in five sources. We have then synthesized the data extracted and presented the results of this study. A total of 102 tools were identified as being used in SPM activities in GSD. We have classified these tools, according to the software life cycle process on which they focus and how they support the 3C collaboration model (communication, coordination and cooperation). The majority of the tools found are standalone tools (77%). A small number of platforms (8%) also offer a set of interacting tools that cover the software development lifecycle. Results also indicate that SPM areas in GSD are not adequately supported by corresponding tools and deserve more attention from tool builders.

  8. A coherent environment of software improvement tools for CMS

    International Nuclear Information System (INIS)

    Eulisse, G.; Muzaffar, S.; Osborne, I.; Taylor, L.; Tuura, L.A.

    2004-01-01

    CMS has developed approximately one million lines of C++ code and uses many more from HEP, Grid and public domain projects. We describe a suite of tools which help to manage this complexity by measuring software dependencies, quality metrics, and CPU and memory performance. This coherent environment integrates and extends existing open-source tools where possible and provides new in-house components where a suitable solution does not already exist. This is a freely available environment with graphical user interface which can be run on any software without the need to recompile or instrument it. We have developed ignominy which performs software dependency analysis of source code, binary products and external software. CPU profiling is provided based on oprofile, with added features such as profile snapshots, distributed profiling and aggregate profiles for farm systems including server-side tools for collecting profile data. Finally, we have developed a low-overhead performance and memory profiling tool, MemProf, which can perform (gprof-style) hierarchical performance profiling, in a way that works with multiple threads and dynamically loaded libraries (unlike gprof). It also gathers exact memory allocation profiles including which code allocates most, in what sizes of chunks, for how long, where the memory is getting freed and where it is getting leaked. We describe this tool suite and how it has been used to enhance the quality of CMS software

  9. Software Tools Used for Continuous Assessment

    Directory of Open Access Journals (Sweden)

    Corina SBUGHEA

    2016-04-01

    Full Text Available he present paper addresses the subject of continuous evaluation and of the IT tools that support it. The approach starts from the main concepts and methods used in the teaching process, according to the assessment methodology and, then, it focuses on their implementation in the Wondershare QuizCreator software.

  10. Software tools for the particle accelerator designs

    International Nuclear Information System (INIS)

    Sugimoto, Masayoshi

    1988-01-01

    The software tools used for the designs of the particle accelerators are going to be implemented on the small computer systems, such as the personal computers or the work stations. These are called from the interactive environment like a window application program. The environment contains the small expert system to make easy to select the design parameters. (author)

  11. OSIRIX: open source multimodality image navigation software

    Science.gov (United States)

    Rosset, Antoine; Pysher, Lance; Spadola, Luca; Ratib, Osman

    2005-04-01

    The goal of our project is to develop a completely new software platform that will allow users to efficiently and conveniently navigate through large sets of multidimensional data without the need of high-end expensive hardware or software. We also elected to develop our system on new open source software libraries allowing other institutions and developers to contribute to this project. OsiriX is a free and open-source imaging software designed manipulate and visualize large sets of medical images: http://homepage.mac.com/rossetantoine/osirix/

  12. Software Tools for Battery Design | Transportation Research | NREL

    Science.gov (United States)

    Software Tools for Battery Design Software Tools for Battery Design Under the Computer-Aided Engineering for Electric Drive Vehicle Batteries (CAEBAT) project, NREL has developed software tools to help using CAEBAT software tools. Knowledge of the interplay of multi-physics at varied scales is imperative

  13. Co-sourcing in software development offshoring

    DEFF Research Database (Denmark)

    Schlichter, Bjarne Rerup; Persson, John Stouby

    2013-01-01

    Software development projects are increasingly geographical distributed with offshoring, which introduce complex risks that can lead to project failure. Co-sourcing is a highly integrative and cohesive approach, seen successful, to software development offshoring. However, research of how co......-sourcing shapes the perception and alleviation of common offshoring risks is limited. We present a case study of how a certified CMMI-level 5 Danish software supplier approaches these risks in offshore co-sourcing. The paper explains how common offshoring risks are perceived and alleviated when adopting the co...

  14. SESAME: a software tool for the numerical dosimetric reconstruction of radiological accidents involving external sources and its application to the accident in Chile in December 2005.

    Science.gov (United States)

    Huet, C; Lemosquet, A; Clairand, I; Rioual, J B; Franck, D; de Carlan, L; Aubineau-Lanièce, I; Bottollier-Depois, J F

    2009-01-01

    Estimating the dose distribution in a victim's body is a relevant indicator in assessing biological damage from exposure in the event of a radiological accident caused by an external source. This dose distribution can be assessed by physical dosimetric reconstruction methods. Physical dosimetric reconstruction can be achieved using experimental or numerical techniques. This article presents the laboratory-developed SESAME--Simulation of External Source Accident with MEdical images--tool specific to dosimetric reconstruction of radiological accidents through numerical simulations which combine voxel geometry and the radiation-material interaction MCNP(X) Monte Carlo computer code. The experimental validation of the tool using a photon field and its application to a radiological accident in Chile in December 2005 are also described.

  15. Open Source Software and the Intellectual Commons.

    Science.gov (United States)

    Dorman, David

    2002-01-01

    Discusses the Open Source Software method of software development and its relationship to control over information content. Topics include digital library resources; reference services; preservation; the legal and economic status of information; technical standards; access to digital data; control of information use; and copyright and patent laws.…

  16. Trust in Co-sourced Software Development

    DEFF Research Database (Denmark)

    Schlichter, Bjarne Rerup; Persson, John Stouby

    2014-01-01

    Software development projects are increasingly geographical distributed with offshoring. Co-sourcing is a highly integrative and cohesive approach, seen successful, to software development offshoring. However, research of how dynamic aspects of trust are shaped in co-sourcing activities is limite...... understanding or personal trust relations. The paper suggests how certain work practices among developers and managers can be explained using a dynamic trust lens based on Abstract Systems, especially dis- and re-embedding mechanisms......Software development projects are increasingly geographical distributed with offshoring. Co-sourcing is a highly integrative and cohesive approach, seen successful, to software development offshoring. However, research of how dynamic aspects of trust are shaped in co-sourcing activities is limited...

  17. Software development tools using GPGPU potentialities

    International Nuclear Information System (INIS)

    Dudnik, V.A.; Kudryavtsev, V.I.; Sereda, T.M.; Us, S.A.; Shestakov, M.V.

    2011-01-01

    The paper deals with potentialities of various up-to-date software development tools for making use of graphic processor (GPU) parallel computing resources. Examples are given to illustrate the use of present-day software tools for the development of applications and realization of algorithms for scientific-technical calculations performed by GPGPU. The paper presents some classes of hard mathematical problems of scientific-technical calculations, for which the GPGPU can be efficiently used. is possible. To reduce the time of calculation program development with the use of GPGPU capabilities, various dedicated programming systems and problem-oriented subroutine libraries are recommended. Performance parameters when solving the problems with and without the use of GPGPU potentialities are compared.

  18. Software Engineering Tools for Scientific Models

    Science.gov (United States)

    Abrams, Marc; Saboo, Pallabi; Sonsini, Mike

    2013-01-01

    Software tools were constructed to address issues the NASA Fortran development community faces, and they were tested on real models currently in use at NASA. These proof-of-concept tools address the High-End Computing Program and the Modeling, Analysis, and Prediction Program. Two examples are the NASA Goddard Earth Observing System Model, Version 5 (GEOS-5) atmospheric model in Cell Fortran on the Cell Broadband Engine, and the Goddard Institute for Space Studies (GISS) coupled atmosphere- ocean model called ModelE, written in fixed format Fortran.

  19. Three novel software tools for ASDEX Upgrade

    International Nuclear Information System (INIS)

    Martinov, S.; Löbhard, T.; Lunt, T.; Behler, K.; Drube, R.; Eixenberger, H.; Herrmann, A.; Lohs, A.; Lüddecke, K.; Merkel, R.; Neu, G.; ASDEX Upgrade Team; MPCDF Garching

    2016-01-01

    Highlights: • Key features of innovative software tools for data visualization and inspection are presented to the nuclear fusion research community. • 3D animation of experiment geometry together with diagnostic data and images allow better understanding of measurements and influence of machine construction details behind them. • Multi-video viewer with fusion relevant image manipulation abilities and event database features allows faster and better decision making from video streams coming from various plasma and machine diagnostics. • Platform independant Web technologies enable the inspection of diagnostic raw signals with virtually any kind of display device. - Abstract: Visualization of measurements together with experimental settings is a general subject in experiments analysis. The complex engineering design, 3D geometry, and manifold of diagnostics in larger fusion research experiments justify the development of special analysis and visualization programs. Novel ASDEX Upgrade (AUG) software tools bring together virtual navigation through 3D device models and advanced play-back and interpretation of video streams from plasma discharges. A third little tool allows the web-based platform independent observation of real-time diagnostic signals. While all three tools stem from spontaneous development ideas and are not considered mission critical for the operation of a fusion device, they with time and growing completeness shaped up as valuable helpers to visualize acquired data in fusion research. A short overview on the goals, the features, and the design as well as the operation of these tools is given in this paper.

  20. Three novel software tools for ASDEX Upgrade

    Energy Technology Data Exchange (ETDEWEB)

    Martinov, S. [Max-Planck-Institut für Plasmaphysik, Boltzmannstr. 2, D-85748 Garching bei München (Germany); Löbhard, T. [Conovum GmbH & Co. KG, Nymphenburger Straße 13, D-80335 München (Germany); Lunt, T. [Max-Planck-Institut für Plasmaphysik, Boltzmannstr. 2, D-85748 Garching bei München (Germany); Behler, K., E-mail: karl.behler@ipp.mpg.de [Max-Planck-Institut für Plasmaphysik, Boltzmannstr. 2, D-85748 Garching bei München (Germany); Drube, R.; Eixenberger, H.; Herrmann, A.; Lohs, A. [Max-Planck-Institut für Plasmaphysik, Boltzmannstr. 2, D-85748 Garching bei München (Germany); Lüddecke, K. [Unlimited Computer Systems GmbH, Seeshaupterstr. 15, D-82393 Iffeldorf (Germany); Merkel, R.; Neu, G.; ASDEX Upgrade Team [Max-Planck-Institut für Plasmaphysik, Boltzmannstr. 2, D-85748 Garching bei München (Germany); MPCDF Garching [Max Planck Compu ting and Data Facility, Boltzmannstr. 2, D-85748 Garching (Germany)

    2016-11-15

    Highlights: • Key features of innovative software tools for data visualization and inspection are presented to the nuclear fusion research community. • 3D animation of experiment geometry together with diagnostic data and images allow better understanding of measurements and influence of machine construction details behind them. • Multi-video viewer with fusion relevant image manipulation abilities and event database features allows faster and better decision making from video streams coming from various plasma and machine diagnostics. • Platform independant Web technologies enable the inspection of diagnostic raw signals with virtually any kind of display device. - Abstract: Visualization of measurements together with experimental settings is a general subject in experiments analysis. The complex engineering design, 3D geometry, and manifold of diagnostics in larger fusion research experiments justify the development of special analysis and visualization programs. Novel ASDEX Upgrade (AUG) software tools bring together virtual navigation through 3D device models and advanced play-back and interpretation of video streams from plasma discharges. A third little tool allows the web-based platform independent observation of real-time diagnostic signals. While all three tools stem from spontaneous development ideas and are not considered mission critical for the operation of a fusion device, they with time and growing completeness shaped up as valuable helpers to visualize acquired data in fusion research. A short overview on the goals, the features, and the design as well as the operation of these tools is given in this paper.

  1. Software architecture considerations for ion source control systems

    International Nuclear Information System (INIS)

    Sinclair, J.W.

    1997-09-01

    General characteristics of distributed control system software tools are examined from the perspective of ion source control system requirements. Emphasis is placed on strategies for building extensible, distributed systems in which the ion source element is one component of a larger system. Vsystem, a commercial software tool kit from Vista Control Systems was utilized extensively in the control system upgrade of the Holifield Radioactive Ion Beam Facility. Part of the control system is described and the characteristics of Vsystem are examined and compared with those of EPICS, the Experimental Physics and Industrial Control System

  2. Holistic Framework For Establishing Interoperability of Heterogeneous Software Development Tools

    National Research Council Canada - National Science Library

    Puett, Joseph

    2003-01-01

    This dissertation presents a Holistic Framework for Software Engineering (HFSE) that establishes collaborative mechanisms by which existing heterogeneous software development tools and models will interoperate...

  3. Hard- and software of real time simulation tools of Electric Power System for adequate modeling power semiconductors in voltage source convertor based HVDC and FACTS

    Directory of Open Access Journals (Sweden)

    Ufa Ruslan A.

    2014-01-01

    Full Text Available The motivation of the presented research is based on the needs for development of new methods and tools for adequate simulation of Flexible Alternating Current Transmission System (FACTS devices and High Voltage Direct Current Transmission (HVDC system as part of real electric power systems (EPS. For that, a hybrid approach for advanced simulation of the FACTS and HVDC based on Voltage Source is proposed. The presented simulation results of the developed hybrid model of VSC confirm the achievement of the desired properties of the model and the effectiveness of the proposed solutions.

  4. Cost Optimization Through Open Source Software

    Directory of Open Access Journals (Sweden)

    Mark VonFange

    2010-12-01

    Full Text Available The cost of information technology (IT as a percentage of overall operating and capital expenditures is growing as companies modernize their operations and as IT becomes an increasingly indispensable part of company resources. The price tag associated with IT infrastructure is a heavy one, and, in today's economy, companies need to look for ways to reduce overhead while maintaining quality operations and staying current with technology. With its advancements in availability, usability, functionality, choice, and power, free/libre open source software (F/LOSS provides a cost-effective means for the modern enterprise to streamline its operations. iXsystems wanted to quantify the benefits associated with the use of open source software at their company headquarters. This article is the outgrowth of our internal analysis of using open source software instead of commercial software in all aspects of company operations.

  5. Westinghouse waste simulation and optimization software tool

    International Nuclear Information System (INIS)

    Mennicken, Kim; Aign, Jorg

    2013-01-01

    Applications for dynamic simulation can be found in virtually all areas of process engineering. The tangible benefits of using dynamic simulation can be seen in tighter design, smoother start-ups and optimized operation. Thus, proper implementation of dynamic simulation can deliver substantial benefits. These benefits are typically derived from improved process understanding. Simulation gives confidence in evidence based decisions and enables users to try out lots of 'what if' scenarios until one is sure that a decision is the right one. In radioactive waste treatment tasks different kinds of waste with different volumes and properties have to be treated, e.g. from NPP operation or D and D activities. Finding a commercially and technically optimized waste treatment concept is a time consuming and difficult task. The Westinghouse Waste Simulation and Optimization Software Tool will enable the user to quickly generate reliable simulation models of various process applications based on equipment modules. These modules can be built with ease and be integrated into the simulation model. This capability ensures that this tool is applicable to typical waste treatment tasks. The identified waste streams and the selected treatment methods are the basis of the simulation and optimization software. After implementing suitable equipment data into the model, process requirements and waste treatment data are fed into the simulation to finally generate primary simulation results. A sensitivity analysis of automated optimization features of the software generates the lowest possible lifecycle cost for the simulated waste stream. In combination with proven waste management equipments and integrated waste management solutions, this tool provides reliable qualitative results that lead to an effective planning and minimizes the total project planning risk of any waste management activity. It is thus the ideal tool for designing a waste treatment facility in an optimum manner

  6. Westinghouse waste simulation and optimization software tool

    Energy Technology Data Exchange (ETDEWEB)

    Mennicken, Kim; Aign, Jorg [Westinghouse Electric Germany GmbH, Hamburg (Germany)

    2013-07-01

    Applications for dynamic simulation can be found in virtually all areas of process engineering. The tangible benefits of using dynamic simulation can be seen in tighter design, smoother start-ups and optimized operation. Thus, proper implementation of dynamic simulation can deliver substantial benefits. These benefits are typically derived from improved process understanding. Simulation gives confidence in evidence based decisions and enables users to try out lots of 'what if' scenarios until one is sure that a decision is the right one. In radioactive waste treatment tasks different kinds of waste with different volumes and properties have to be treated, e.g. from NPP operation or D and D activities. Finding a commercially and technically optimized waste treatment concept is a time consuming and difficult task. The Westinghouse Waste Simulation and Optimization Software Tool will enable the user to quickly generate reliable simulation models of various process applications based on equipment modules. These modules can be built with ease and be integrated into the simulation model. This capability ensures that this tool is applicable to typical waste treatment tasks. The identified waste streams and the selected treatment methods are the basis of the simulation and optimization software. After implementing suitable equipment data into the model, process requirements and waste treatment data are fed into the simulation to finally generate primary simulation results. A sensitivity analysis of automated optimization features of the software generates the lowest possible lifecycle cost for the simulated waste stream. In combination with proven waste management equipments and integrated waste management solutions, this tool provides reliable qualitative results that lead to an effective planning and minimizes the total project planning risk of any waste management activity. It is thus the ideal tool for designing a waste treatment facility in an optimum manner

  7. A software tool for ecosystem services assessments

    Science.gov (United States)

    Riegels, Niels; Klinting, Anders; Butts, Michael; Middelboe, Anne Lise; Mark, Ole

    2017-04-01

    The EU FP7 DESSIN project is developing methods and tools for assessment of ecosystem services (ESS) and associated economic values, with a focus on freshwater ESS in urban settings. Although the ESS approach has gained considerable visibility over the past ten years, operationalizing the approach remains a challenge. Therefore, DESSSIN is also supporting development of a free software tool to support users implementing the DESSIN ESS evaluation framework. The DESSIN ESS evaluation framework is a structured approach to measuring changes in ecosystem services. The main purpose of the framework is to facilitate the application of the ESS approach in the appraisal of projects that have impacts on freshwater ecosystems and their services. The DESSIN framework helps users evaluate changes in ESS by linking biophysical, economic, and sustainability assessments sequentially. It was developed using the Common International Classification of Ecosystem Services (CICES) and the DPSIR (Drivers, Pressures, States, Impacts, Responses) adaptive management cycle. The former is a standardized system for the classification of ESS developed by the European Union to enhance the consistency and comparability of ESS assessments. The latter is a well-known concept to disentangle the biophysical and social aspects of a system under study. As part of its analytical component, the DESSIN framework also integrates elements of the Final Ecosystem Goods and Services-Classification System (FEGS-CS) of the US Environmental Protection Agency (USEPA). As implemented in the software tool, the DESSIN framework consists of five parts: • In part I of the evaluation, the ecosystem is defined and described and the local stakeholders are identified. In addition, administrative details and objectives of the assessment are defined. • In part II, drivers and pressures are identified. Once these first two elements of the DPSIR scheme have been characterized, the claimed/expected capabilities of a

  8. Software tools for microprocessor based systems

    International Nuclear Information System (INIS)

    Halatsis, C.

    1981-01-01

    After a short review of the hardware and/or software tools for the development of single-chip, fixed instruction set microprocessor-based sytems we focus on the software tools for designing systems based on microprogrammed bit-sliced microprocessors. Emphasis is placed on meta-microassemblers and simulation facilties at the register-transfer-level and architecture level. We review available meta-microassemblers giving their most important features, advantages and disadvantages. We also make extentions to higher-level microprogramming languages and associated systems specifically developed for bit-slices. In the area of simulation facilities we first discuss the simulation objectives and the criteria for chosing the right simulation language. We consertrate to simulation facilities already used in bit-slices projects and discuss the gained experience. We conclude by describing the way the Signetics meta-microassembler and the ISPS simulation tool have been employed in the design of a fast microprogrammed machine, called MICE, made out of ECL bit-slices. (orig.)

  9. ATLAS software configuration and build tool optimisation

    Science.gov (United States)

    Rybkin, Grigory; Atlas Collaboration

    2014-06-01

    ATLAS software code base is over 6 million lines organised in about 2000 packages. It makes use of some 100 external software packages, is developed by more than 400 developers and used by more than 2500 physicists from over 200 universities and laboratories in 6 continents. To meet the challenge of configuration and building of this software, the Configuration Management Tool (CMT) is used. CMT expects each package to describe its build targets, build and environment setup parameters, dependencies on other packages in a text file called requirements, and each project (group of packages) to describe its policies and dependencies on other projects in a text project file. Based on the effective set of configuration parameters read from the requirements files of dependent packages and project files, CMT commands build the packages, generate the environment for their use, or query the packages. The main focus was on build time performance that was optimised within several approaches: reduction of the number of reads of requirements files that are now read once per package by a CMT build command that generates cached requirements files for subsequent CMT build commands; introduction of more fine-grained build parallelism at package task level, i.e., dependent applications and libraries are compiled in parallel; code optimisation of CMT commands used for build; introduction of package level build parallelism, i. e., parallelise the build of independent packages. By default, CMT launches NUMBER-OF-PROCESSORS build commands in parallel. The other focus was on CMT commands optimisation in general that made them approximately 2 times faster. CMT can generate a cached requirements file for the environment setup command, which is especially useful for deployment on distributed file systems like AFS or CERN VMFS. The use of parallelism, caching and code optimisation significantly-by several times-reduced software build time, environment setup time, increased the efficiency of

  10. Co-sourcing in software development offshoring

    DEFF Research Database (Denmark)

    Schlichter, Bjarne Rerup; Persson, John Stouby

    2013-01-01

    Software development projects are increasingly geographical distributed with offshoring, which introduce complex risks that can lead to project failure. Co-sourcing is a highly integrative and cohesive approach, seen successful, to software development offshoring. However, research of how co-sour......-taking by high attention to of the closely interrelated structure and technology components in terms of CMMI and the actors’ cohesion and integration in terms of Scrum....

  11. A review of electronic engineering design free software tools

    OpenAIRE

    Medrano Sánchez, Carlos; Plaza García, Inmaculada; Castro Gil, Manuel Alonso; García Sevilla, Francisco; Martínez Calero, J.D.; Pou Félix, Josep; Corbalán Fuertes, Montserrat

    2010-01-01

    In this paper, we review electronic design free software tools. We have searched open source programs that help with several tasks of the electronic design flow: analog and digital simulation, schematic capture, printed circuit board design and hardware description language compilation and simulation. Using some rapid criteria for verifying their availability, we have selected some of them which are worth working with. This work intends to perform a deeper analysis of fre...

  12. Nurturing reliable and robust open-source scientific software

    Science.gov (United States)

    Uieda, L.; Wessel, P.

    2017-12-01

    Scientific results are increasingly the product of software. The reproducibility and validity of published results cannot be ensured without access to the source code of the software used to produce them. Therefore, the code itself is a fundamental part of the methodology and must be published along with the results. With such a reliance on software, it is troubling that most scientists do not receive formal training in software development. Tools such as version control, continuous integration, and automated testing are routinely used in industry to ensure the correctness and robustness of software. However, many scientist do not even know of their existence (although efforts like Software Carpentry are having an impact on this issue; software-carpentry.org). Publishing the source code is only the first step in creating an open-source project. For a project to grow it must provide documentation, participation guidelines, and a welcoming environment for new contributors. Expanding the project community is often more challenging than the technical aspects of software development. Maintainers must invest time to enforce the rules of the project and to onboard new members, which can be difficult to justify in the context of the "publish or perish" mentality. This problem will continue as long as software contributions are not recognized as valid scholarship by hiring and tenure committees. Furthermore, there are still unsolved problems in providing attribution for software contributions. Many journals and metrics of academic productivity do not recognize citations to sources other than traditional publications. Thus, some authors choose to publish an article about the software and use it as a citation marker. One issue with this approach is that updating the reference to include new contributors involves writing and publishing a new article. A better approach would be to cite a permanent archive of individual versions of the source code in services such as Zenodo

  13. Open source tools for fluorescent imaging.

    Science.gov (United States)

    Hamilton, Nicholas A

    2012-01-01

    As microscopy becomes increasingly automated and imaging expands in the spatial and time dimensions, quantitative analysis tools for fluorescent imaging are becoming critical to remove both bottlenecks in throughput as well as fully extract and exploit the information contained in the imaging. In recent years there has been a flurry of activity in the development of bio-image analysis tools and methods with the result that there are now many high-quality, well-documented, and well-supported open source bio-image analysis projects with large user bases that cover essentially every aspect from image capture to publication. These open source solutions are now providing a viable alternative to commercial solutions. More importantly, they are forming an interoperable and interconnected network of tools that allow data and analysis methods to be shared between many of the major projects. Just as researchers build on, transmit, and verify knowledge through publication, open source analysis methods and software are creating a foundation that can be built upon, transmitted, and verified. Here we describe many of the major projects, their capabilities, and features. We also give an overview of the current state of open source software for fluorescent microscopy analysis and the many reasons to use and develop open source methods. Copyright © 2012 Elsevier Inc. All rights reserved.

  14. Towards E-CASE Tools for Software Engineering

    OpenAIRE

    Nabil Arman

    2013-01-01

    CASE tools are having an important role in all phases of software systems development and engineering. This is evident in the huge benefits obtained from using these tools including their cost-effectiveness, rapid software application development, and improving the possibility of software reuse to name just a few. In this paper, the idea of moving towards E-CASE tools, rather than traditional CASE tools, is advocated since these E-CASE tools have all the benefits and advantages of traditional...

  15. Communal Resources in Open Source Software Development

    Science.gov (United States)

    Spaeth, Sebastian; Haefliger, Stefan; von Krogh, Georg; Renzl, Birgit

    2008-01-01

    Introduction: Virtual communities play an important role in innovation. The paper focuses on the particular form of collective action in virtual communities underlying as Open Source software development projects. Method: Building on resource mobilization theory and private-collective innovation, we propose a theory of collective action in…

  16. Intrinsic Motivation in Open Source Software Development

    DEFF Research Database (Denmark)

    Bitzer, J.; W., Schrettl,; Schröder, Philipp

    2004-01-01

    This papers sheds light on the puzzling evidence that even though open source software (OSS) is a public good, it is developed for free by highly qualified, young and motivated individuals, and evolves at a rapid pace. We show that once OSS development is understood as the private provision...

  17. Open source software migration: Best practices

    CSIR Research Space (South Africa)

    Molefe, Onkgopotse M

    2010-09-01

    Full Text Available Open source software (OSS) has gained prominence worldwide, largely due to cost savings and security considerations. This has caused a change in the IT sector and has led to the migration of desktops from proprietary to OSS. The problem...

  18. An expert system based software sizing tool, phase 2

    Science.gov (United States)

    Friedlander, David

    1990-01-01

    A software tool was developed for predicting the size of a future computer program at an early stage in its development. The system is intended to enable a user who is not expert in Software Engineering to estimate software size in lines of source code with an accuracy similar to that of an expert, based on the program's functional specifications. The project was planned as a knowledge based system with a field prototype as the goal of Phase 2 and a commercial system planned for Phase 3. The researchers used techniques from Artificial Intelligence and knowledge from human experts and existing software from NASA's COSMIC database. They devised a classification scheme for the software specifications, and a small set of generic software components that represent complexity and apply to large classes of programs. The specifications are converted to generic components by a set of rules and the generic components are input to a nonlinear sizing function which makes the final prediction. The system developed for this project predicted code sizes from the database with a bias factor of 1.06 and a fluctuation factor of 1.77, an accuracy similar to that of human experts but without their significant optimistic bias.

  19. Code Forking, Governance, and Sustainability in Open Source Software

    Directory of Open Access Journals (Sweden)

    Juho Lindman

    2013-01-01

    Full Text Available The right to fork open source code is at the core of open source licensing. All open source licenses grant the right to fork their code, that is to start a new development effort using an existing code as its base. Thus, code forking represents the single greatest tool available for guaranteeing sustainability in open source software. In addition to bolstering program sustainability, code forking directly affects the governance of open source initiatives. Forking, and even the mere possibility of forking code, affects the governance and sustainability of open source initiatives on three distinct levels: software, community, and ecosystem. On the software level, the right to fork makes planned obsolescence, versioning, vendor lock-in, end-of-support issues, and similar initiatives all but impossible to implement. On the community level, forking impacts both sustainability and governance through the power it grants the community to safeguard against unfavourable actions by corporations or project leaders. On the business-ecosystem level forking can serve as a catalyst for innovation while simultaneously promoting better quality software through natural selection. Thus, forking helps keep open source initiatives relevant and presents opportunities for the development and commercialization of current and abandoned programs.

  20. AMIDE: A Free Software Tool for Multimodality Medical Image Analysis

    Directory of Open Access Journals (Sweden)

    Andreas Markus Loening

    2003-07-01

    Full Text Available Amide's a Medical Image Data Examiner (AMIDE has been developed as a user-friendly, open-source software tool for displaying and analyzing multimodality volumetric medical images. Central to the package's abilities to simultaneously display multiple data sets (e.g., PET, CT, MRI and regions of interest is the on-demand data reslicing implemented within the program. Data sets can be freely shifted, rotated, viewed, and analyzed with the program automatically handling interpolation as needed from the original data. Validation has been performed by comparing the output of AMIDE with that of several existing software packages. AMIDE runs on UNIX, Macintosh OS X, and Microsoft Windows platforms, and it is freely available with source code under the terms of the GNU General Public License.

  1. A Survey of Open Source Tools for Business Intelligence

    DEFF Research Database (Denmark)

    Thomsen, Christian; Pedersen, Torben Bach

    2009-01-01

    The industrial use of open source Business Intelligence (BI) tools is becoming more common, but is still not as widespread as for other types of software. It is therefore of interest to explore which possibilities are available for open source BI and compare the tools. In this survey paper, we co...

  2. Sandia software guidelines: Volume 5, Tools, techniques, and methodologies

    Energy Technology Data Exchange (ETDEWEB)

    1989-07-01

    This volume is one in a series of Sandia Software Guidelines intended for use in producing quality software within Sandia National Laboratories. This volume describes software tools and methodologies available to Sandia personnel for the development of software, and outlines techniques that have proven useful within the Laboratories and elsewhere. References and evaluations by Sandia personnel are included. 6 figs.

  3. Techniques and tools for software qualification in KNICS

    International Nuclear Information System (INIS)

    Cha, Kyung H.; Lee, Yeong J.; Cheon, Se W.; Kim, Jang Y.; Lee, Jang S.; Kwon, Kee C.

    2004-01-01

    This paper describes techniques and tools for qualifying safety software in Korea Nuclear Instrumentation and Control System (KNICS). Safety software are developed and applied for a Reactor Protection System (RPS), an Engineered Safety Features and Component Control System (ESF-CCS), and a safety Programmable Logic Controller (PLC) in the KNICS. Requirements and design specifications of safety software are written by both natural language and formal specification languages. Statechart is used for formal specification of software of the ESF-CCS and the safety PLC while NuSCR is used for formal specification of them of the RPS. pSET (POSCON Software Engineering Tool) as a software development tool has been developed and utilized for the IEC61131-3 based PLC programming. The qualification of the safety software consists of software verification and validation (V and V) through software life cycle, software safety analysis, and software configuration management, software quality assurance, and COTS (Commercial-Off-The-Shelf) dedication. The criteria and requirements for qualifying the safety software have been established with them in Software Review Plan (SRP)/Branch Technical Positions (BTP)-14, IEEE Std. 7-4.3.2-1998, NUREG/CR-6463, IEEE Std. 1012-1998, and so on. Figure 1 summarizes qualification techniques and tools for the safety software

  4. Testing tool for software concerning nuclear power plant safety

    International Nuclear Information System (INIS)

    Boulc'h, J.; Le Meur, M.; Collart, J.M.; Segalard, J.; Uberschlag, J.

    1984-11-01

    In the present case, softwares to be analyzed are all written in assembler language. This paper presents the study and the realization of a tool to analyze softwares which have an important role for nuclear reactor protection and sauvegarde: principles of the tool design, working principle, realization and evolution of dynamic analyze tool [fr

  5. Software Development Methods and Tools: a New Zealand study

    OpenAIRE

    Chris Phillips; Elizabeth Kemp; Duncan Hedderley

    2005-01-01

    This study is a more detailed follow-up to a preliminary investigation of the practices of software engineers in New Zealand. The focus of this study is on the methods and tools used by software developers in their current organisation. The project involved detailed questionnaires being piloted and sent out to several hundred software developers. A central part of the research involved the identification of factors affecting the use and take-up of existing software development tools in the wo...

  6. Selection and Management of Open Source Software in Libraries

    OpenAIRE

    Vimal Kumar, V.

    2007-01-01

    Open source software was a revolutionary concept among computer programmers and users. To a certain extent open source solutions could provide an alternative solution to costly commercial software. Open source software is, software that users have the ability to run, copy, distribute, study, change, share and improve for any purpose. Open source library software’s does not need the initial cost of commercial software and enables libraries to have greater control over their working environmen...

  7. Herramientas libres para modelar software Free tools to model software

    Directory of Open Access Journals (Sweden)

    Mauro Callejas Cuervo Óscar Yovany Baquero Moreno

    2010-11-01

    Full Text Available Observación acerca del  software libre y de suimplicación en procesos de desarrollo de  softwarecon herramientas 4G por parte de entidades opersonas sin capitales astronómicos y sin lamentalidad acaparadora de dominar el mercado conproductos costosos que las hagan multimillonarias yque no ofrecen una garantía real, ni la posibilidadsiquiera de conocer el  software por el que se hapagado, y mucho menos de modificarlo si no cumplenuestras expectativas.

  8. ADAPTING OPEN-SOURCE SOFTWARE FOR ENTERPRISE

    Directory of Open Access Journals (Sweden)

    Bogdan MICU GHILIC

    2013-06-01

    Full Text Available Low developed companies do not use ERP solutions for resource management, they don't have CRM systems for tracking customers, online presence is low and consequently they are selling low volumes. Their work does not generate enough capital to buy specialized software and the local community is too small to create open-source software for them.When adapting an open-source enterprise solution, from a certain level of integration, it is necessary to align to the Romanian legislation. For this you need more than a simple translation. For example, in accounting, the Romanian chart of accounts should be used, the local fiscal calendar, the rules of the Romanian legislation and the specific identifiers for Romanian companies. The solution: Open source applications can be localized. A small community cannot create complex system starting from nothing, but they can adapt existing ones already created and used all over the world. Given the individual characteristics of the Romanian market, open source ERP, CM and e-commerce will be integrated by specialized consultancy agency in Romania just as is done in France (Compiere, Spain (Openbravo, Belgium (OpenERP or the United States (Apache oFBiz. This will not generate license costs for the companies, only the expenses for hardware and implementation consultancy. If we can create a common infrastructure, hardware cost will be waived for cloud SaaS offering, in opposition with the on-premise option.

  9. Open Source Software The Challenge Ahead

    CERN Multimedia

    CERN. Geneva

    2007-01-01

    The open source community has done amazingly well in terms of challenging the historical epicenter of computing - the supercomputer and data center - and driving change there. Linux now represents a healthy and growing share of infrastructure in large organisations globally. Apache and other infrastructural components have established the new de facto standard for software in the back office: freedom. It would be easy to declare victory. But the real challenge lies ahead - taking free software to the mass market, to your grandparents, to your nieces and nephews, to your friends. This is the next wave, and if we are to be successful we need to articulate the audacious goals clearly and loudly - because that's how the community process works best. Speaker Bio: Mark Shuttleworth founded the Ubuntu Project in early 2004. Ubuntu is an enterprise Linux distribution that is freely available worldwide and has both desktop and enterprise server editions. Mark studied finance and information technology at the Universit...

  10. An open-source thermodynamic software library

    DEFF Research Database (Denmark)

    Ritschel, Tobias Kasper Skovborg; Gaspar, Jozsef; Capolei, Andrea

    This is a technical report which accompanies the article ”An open-source thermodynamic software library” which describes an efficient Matlab and C implementation for evaluation of thermodynamic properties. In this technical report we present the model equations, that are also presented in the paper......, together with a full set of first and second order derivatives with respect to temperature and pressure, and in cases where applicable, also with respect to mole numbers. The library is based on parameters and correlations from the DIPPR database and the Peng-Robinson and the Soave-Redlich-Kwong equations...

  11. Free software, Open source software, licenses. A short presentation including a procedure for research software and data dissemination

    OpenAIRE

    Gomez-Diaz , Teresa

    2014-01-01

    4 pages. Spanish version: Software libre, software de código abierto, licencias. Donde se propone un procedimiento de distribución de software y datos de investigación; The main goal of this document is to help the research community to understand the basic concepts of software distribution: Free software, Open source software, licenses. This document also includes a procedure for research software and data dissemination.

  12. Estimation of toxicity using a Java based software tool

    Science.gov (United States)

    A software tool has been developed that will allow a user to estimate the toxicity for a variety of endpoints (such as acute aquatic toxicity). The software tool is coded in Java and can be accessed using a web browser (or alternatively downloaded and ran as a stand alone applic...

  13. User Studies: Developing Learning Strategy Tool Software for Children.

    Science.gov (United States)

    Fitzgerald, Gail E.; Koury, Kevin A.; Peng, Hsinyi

    This paper is a report of user studies for developing learning strategy tool software for children. The prototype software demonstrated is designed for children with learning and behavioral disabilities. The tools consist of easy-to-use templates for creating organizational, memory, and learning approach guides for use in classrooms and at home.…

  14. Caesy: A software tool for computer-aided engineering

    Science.gov (United States)

    Wette, Matt

    1993-01-01

    A new software tool, Caesy, is described. This tool provides a strongly typed programming environment for research in the development of algorithms and software for computer-aided control system design. A description of the user language and its implementation as they currently stand are presented along with a description of work in progress and areas of future work.

  15. Repositorios digitales y software open source

    Directory of Open Access Journals (Sweden)

    Doria, María Vanesa

    2015-06-01

    Full Text Available En la actualidad las universidades se encuentran en constante evolución, fruto de la transformación generada por la sociedad de la información y el conocimiento, donde la transversalidad son las Tecnologías de la Información y Comunicación (TIC, que tienen como objetivo ampliar el acceso a la información y el conocimiento a través de su herramienta digital más distinguida, Internet. Las universidades retroalimentan su conocimiento e información, mediante las producciones científicasacadémicas, y para promover el acceso a ellas, muchas universidades están inclinándose al movimiento del Acceso Abierto (AA siguiendo la vía verde en el desarrollo de repositorios digitales (RD. Para la creación de RD es necesario analizar los software open source disponibles, dado que estos son las herramientas que facilitan la automatización de los mismos. El presente estudio se centra en el análisis de los software open source existentes en el mercado.

  16. A communication protocol for interactively controlling software tools

    NARCIS (Netherlands)

    Wulp, van der J.

    2008-01-01

    We present a protocol for interactively using software tools in a loosely coupled tool environment. Such an environment can assist the user in doing tasks that require the use of multiple tools. For example, it can invoke tools on certain input, set processing parameters, await task completion and

  17. Improvement of Computer Software Quality through Software Automated Tools.

    Science.gov (United States)

    1986-08-31

    maintain an effective and economical monitoring program that includes both processes -* and products which makes data available to the Government...presented to help the AFPRO understand what a soft- wace tool is and how it works. There are many ways in which one can view the characteristics of soft

  18. Workshop on Software Development Tools for Petascale Computing

    Energy Technology Data Exchange (ETDEWEB)

    Vetter, Jeffrey [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Georgia Inst. of Technology, Atlanta, GA (United States)

    2007-08-01

    Petascale computing systems will soon be available to the DOE science community. Recent studies in the productivity of HPC platforms point to better software environments as a key enabler to science on these systems. To prepare for the deployment and productive use of these petascale platforms, the DOE science and general HPC community must have the software development tools, such as performance analyzers and debuggers that meet application requirements for scalability, functionality, reliability, and ease of use. In this report, we identify and prioritize the research opportunities in the area of software development tools for high performance computing. To facilitate this effort, DOE hosted a group of 55 leading international experts in this area at the Software Development Tools for PetaScale Computing (SDTPC) Workshop, which was held in Washington, D.C. on August 1 and 2, 2007. Software development tools serve as an important interface between the application teams and the target HPC architectures. Broadly speaking, these roles can be decomposed into three categories: performance tools, correctness tools, and development environments. Accordingly, this SDTPC report has four technical thrusts: performance tools, correctness tools, development environment infrastructures, and scalable tool infrastructures. The last thrust primarily targets tool developers per se, rather than end users. Finally, this report identifies non-technical strategic challenges that impact most tool development. The organizing committee emphasizes that many critical areas are outside the scope of this charter; these important areas include system software, compilers, and I/O.

  19. Improving design processes through structured reflection : a prototype software tool

    OpenAIRE

    Reymen, I.M.M.J.; Melby, E.

    2001-01-01

    A prototype software tool facilitating the use of a design method supporting structured reflection on design processes is presented. The prototype, called Echo, has been developed to explore the benefits of using a software system to facilitate the use of the design method. Both the prototype software tool and the design method are developed as part of the Ph.D. project of Isabelle Reymen. The goal of the design method is supporting designers with reflection on design processes in a systemati...

  20. Modern software approaches applied to a Hydrological model: the GEOtop Open-Source Software Project

    Science.gov (United States)

    Cozzini, Stefano; Endrizzi, Stefano; Cordano, Emanuele; Bertoldi, Giacomo; Dall'Amico, Matteo

    2017-04-01

    The GEOtop hydrological scientific package is an integrated hydrological model that simulates the heat and water budgets at and below the soil surface. It describes the three-dimensional water flow in the soil and the energy exchange with the atmosphere, considering the radiative and turbulent fluxes. Furthermore, it reproduces the highly non-linear interactions between the water and energy balance during soil freezing and thawing, and simulates the temporal evolution of snow cover, soil temperature and moisture. The core components of the package were presented in the 2.0 version (Endrizzi et al, 2014), which was released as Free Software Open-source project. However, despite the high scientific quality of the project, a modern software engineering approach was still missing. Such weakness hindered its scientific potential and its use both as a standalone package and, more importantly, in an integrate way with other hydrological software tools. In this contribution we present our recent software re-engineering efforts to create a robust and stable scientific software package open to the hydrological community, easily usable by researchers and experts, and interoperable with other packages. The activity takes as a starting point the 2.0 version, scientifically tested and published. This version, together with several test cases based on recent published or available GEOtop applications (Cordano and Rigon, 2013, WRR, Kollet et al, 2016, WRR) provides the baseline code and a certain number of referenced results as benchmark. Comparison and scientific validation can then be performed for each software re-engineering activity performed on the package. To keep track of any single change the package is published on its own github repository geotopmodel.github.io/geotop/ under GPL v3.0 license. A Continuous Integration mechanism by means of Travis-CI has been enabled on the github repository on master and main development branches. The usage of CMake configuration tool

  1. Software Development Methods and Tools: a New Zealand study

    Directory of Open Access Journals (Sweden)

    Chris Phillips

    2005-05-01

    Full Text Available This study is a more detailed follow-up to a preliminary investigation of the practices of software engineers in New Zealand. The focus of this study is on the methods and tools used by software developers in their current organisation. The project involved detailed questionnaires being piloted and sent out to several hundred software developers. A central part of the research involved the identification of factors affecting the use and take-up of existing software development tools in the workplace. The full spectrum of tools from fully integrated I-CASE tools to individual software applications, such as drawing tools was investigated. This paper describes the project and presents the findings.

  2. Applying CASE Tools for On-Board Software Development

    Science.gov (United States)

    Brammer, U.; Hönle, A.

    For many space projects the software development is facing great pressure with respect to quality, costs and schedule. One way to cope with these challenges is the application of CASE tools for automatic generation of code and documentation. This paper describes two CASE tools: Rhapsody (I-Logix) featuring UML and ISG (BSSE) that provides modeling of finite state machines. Both tools have been used at Kayser-Threde in different space projects for the development of on-board software. The tools are discussed with regard to the full software development cycle.

  3. EISA 432 Energy Audits Best Practices: Software Tools

    Energy Technology Data Exchange (ETDEWEB)

    Maryl Fisher

    2014-11-01

    Five whole building analysis software tools that can aid an energy manager with fulfilling energy audit and commissioning/retro-commissioning requirements were selected for review in this best practices study. A description of each software tool is provided as well as a discussion of the user interface and level of expertise required for each tool, a review of how to use the tool for analyzing energy conservation opportunities, the format and content of reports generated by the tool, and a discussion on the applicability of the tool for commissioning.

  4. A portable software tool for computing digitally reconstructed radiographs

    International Nuclear Information System (INIS)

    Chaney, Edward L.; Thorn, Jesse S.; Tracton, Gregg; Cullip, Timothy; Rosenman, Julian G.; Tepper, Joel E.

    1995-01-01

    Purpose: To develop a portable software tool for fast computation of digitally reconstructed radiographs (DRR) with a friendly user interface and versatile image format and display options. To provide a means for interfacing with commercial and custom three-dimensional (3D) treatment planning systems. To make the tool freely available to the Radiation Oncology community. Methods and Materials: A computer program for computing DRRs was enhanced with new features and rewritten to increase computational efficiency. A graphical user interface was added to improve ease of data input and DRR display. Installer, programmer, and user manuals were written, and installation test data sets were developed. The code conforms to the specifications of the Cooperative Working Group (CWG) of the National Cancer Institute (NCI) Contract on Radiotherapy Treatment Planning Tools. Results: The interface allows the user to select DRR input data and image formats primarily by point-and-click mouse operations. Digitally reconstructed radiograph formats are predefined by configuration files that specify 19 calculation parameters. Enhancements include improved contrast resolution for visualizing surgical clips, an extended source model to simulate the penumbra region in a computed port film, and the ability to easily modify the CT numbers of objects contoured on the planning computed tomography (CT) scans. Conclusions: The DRR tool can be used with 3D planning systems that lack this functionality, or perhaps improve the quality and functionality of existing DRR software. The tool can be interfaced to 3D planning systems that run on most modern graphics workstations, and can also function as a stand-alone program

  5. Software Users Manual (SUM): Extended Testability Analysis (ETA) Tool

    Science.gov (United States)

    Maul, William A.; Fulton, Christopher E.

    2011-01-01

    This software user manual describes the implementation and use the Extended Testability Analysis (ETA) Tool. The ETA Tool is a software program that augments the analysis and reporting capabilities of a commercial-off-the-shelf (COTS) testability analysis software package called the Testability Engineering And Maintenance System (TEAMS) Designer. An initial diagnostic assessment is performed by the TEAMS Designer software using a qualitative, directed-graph model of the system being analyzed. The ETA Tool utilizes system design information captured within the diagnostic model and testability analysis output from the TEAMS Designer software to create a series of six reports for various system engineering needs. The ETA Tool allows the user to perform additional studies on the testability analysis results by determining the detection sensitivity to the loss of certain sensors or tests. The ETA Tool was developed to support design and development of the NASA Ares I Crew Launch Vehicle. The diagnostic analysis provided by the ETA Tool was proven to be valuable system engineering output that provided consistency in the verification of system engineering requirements. This software user manual provides a description of each output report generated by the ETA Tool. The manual also describes the example diagnostic model and supporting documentation - also provided with the ETA Tool software release package - that were used to generate the reports presented in the manual

  6. Building Energy Management Open Source Software

    Energy Technology Data Exchange (ETDEWEB)

    2017-06-20

    This is the repository for Building Energy Management Open Source Software (BEMOSS), which is an open source operating system that is engineered to improve sensing and control of equipment in small- and medium-sized commercial buildings. BEMOSS offers the following key features: (1) Open source, open architecture – BEMOSS is an open source operating system that is built upon VOLTTRON – a distributed agent platform developed by Pacific Northwest National Laboratory (PNNL). BEMOSS was designed to make it easy for hardware manufacturers to seamlessly interface their devices with BEMOSS. Software developers can also contribute to adding additional BEMOSS functionalities and applications. (2) Plug & play – BEMOSS was designed to automatically discover supported load controllers (including smart thermostats, VAV/RTUs, lighting load controllers and plug load controllers) in commercial buildings. (3) Interoperability – BEMOSS was designed to work with load control devices form different manufacturers that operate on different communication technologies and data exchange protocols. (4) Cost effectiveness – Implementation of BEMOSS deemed to be cost-effective as it was built upon a robust open source platform that can operate on a low-cost single-board computer, such as Odroid. This feature could contribute to its rapid deployment in small- or medium-sized commercial buildings. (5) Scalability and ease of deployment – With its multi-node architecture, BEMOSS provides a distributed architecture where load controllers in a multi-floor and high occupancy building could be monitored and controlled by multiple single-board computers hosting BEMOSS. This makes it possible for a building engineer to deploy BEMOSS in one zone of a building, be comfortable with its operation, and later on expand the deployment to the entire building to make it more energy efficient. (6) Ability to provide local and remote monitoring – BEMOSS provides both local and remote monitoring

  7. Technology Transfer Challenges for High-Assurance Software Engineering Tools

    Science.gov (United States)

    Koga, Dennis (Technical Monitor); Penix, John; Markosian, Lawrence Z.

    2003-01-01

    In this paper, we describe our experience with the challenges thar we are currently facing in our effort to develop advanced software verification and validation tools. We categorize these challenges into several areas: cost benefits modeling, tool usability, customer application domain, and organizational issues. We provide examples of challenges in each area and identrfj, open research issues in areas which limit our ability to transfer high-assurance software engineering tools into practice.

  8. Windows Developer Power Tools Turbocharge Windows development with more than 170 free and open source tools

    CERN Document Server

    Avery, James

    2007-01-01

    Software developers need to work harder and harder to bring value to their development process in order to build high quality applications and remain competitive. Developers can accomplish this by improving their productivity, quickly solving problems, and writing better code. A wealth of open source and free software tools are available for developers who want to improve the way they create, build, deploy, and use software. Tools, components, and frameworks exist to help developers at every point in the development process. Windows Developer Power Tools offers an encyclopedic guide to m

  9. Building Energy Management Open Source Software

    Energy Technology Data Exchange (ETDEWEB)

    Rahman, Saifur [Virginia Polytechnic Inst. and State Univ. (Virginia Tech), Blacksburg, VA (United States)

    2017-08-25

    Funded by the U.S. Department of Energy in November 2013, a Building Energy Management Open Source Software (BEMOSS) platform was engineered to improve sensing and control of equipment in small- and medium-sized commercial buildings. According to the Energy Information Administration (EIA), small- (5,000 square feet or smaller) and medium-sized (between 5,001 to 50,000 square feet) commercial buildings constitute about 95% of all commercial buildings in the U.S. These buildings typically do not have Building Automation Systems (BAS) to monitor and control building operation. While commercial BAS solutions exist, including those from Siemens, Honeywell, Johnsons Controls and many more, they are not cost effective in the context of small- and medium-sized commercial buildings, and typically work with specific controller products from the same company. BEMOSS targets small and medium-sized commercial buildings to address this gap.

  10. Software Tools for In-Situ Documentation of Built Heritage

    Science.gov (United States)

    Smars, P.

    2013-07-01

    The paper presents open source software tools developed by the author to facilitate in-situ documentation of architectural and archæological heritage. The design choices are exposed and related to a general issue in conservation and documentation: taking decisions about a valuable object under threat . The questions of level of objectivity is central to the three steps of this process. It is our belief that in-situ documentation has to be favoured in this demanding context, full of potential discoveries. The very powerful surveying techniques in rapid development nowadays enhance our vision but often tend to bring back a critical part of the documentation process to the office. The software presented facilitate a direct treatment of the data on the site. Emphasis is given to flexibility, interoperability and simplicity. Key features of the software are listed and illustrated with examples (3D model of Gothic vaults, analysis of the shape of a column, deformation of a wall, direct interaction with AutoCAD).

  11. Tool support for distributed software engineering

    NARCIS (Netherlands)

    Spanjers, H.; Ter Huurne, M.; Bendas, D.; Graaf, B.; Lormans, M.; Van Solingen, R.

    2006-01-01

    Developing a software system in collaboration with other partners, and on different geographical locations is a big challenge for organizations. In this article we first discuss a system that automates build and test processes: SoftFab. This system has been successfully applied in practice in the

  12. Module Testing Techniques for Nuclear Safety Critical Software Using LDRA Testing Tool

    International Nuclear Information System (INIS)

    Moon, Kwon-Ki; Kim, Do-Yeon; Chang, Hoon-Seon; Chang, Young-Woo; Yun, Jae-Hee; Park, Jee-Duck; Kim, Jae-Hack

    2006-01-01

    The safety critical software in the I and C systems of nuclear power plants requires high functional integrity and reliability. To achieve those requirement goals, the safety critical software should be verified and tested according to related codes and standards through verification and validation (V and V) activities. The safety critical software testing is performed at various stages during the development of the software, and is generally classified as three major activities: module testing, system integration testing, and system validation testing. Module testing involves the evaluation of module level functions of hardware and software. System integration testing investigates the characteristics of a collection of modules and aims at establishing their correct interactions. System validation testing demonstrates that the complete system satisfies its functional requirements. In order to generate reliable software and reduce high maintenance cost, it is important that software testing is carried out at module level. Module testing for the nuclear safety critical software has rarely been performed by formal and proven testing tools because of its various constraints. LDRA testing tool is a widely used and proven tool set that provides powerful source code testing and analysis facilities for the V and V of general purpose software and safety critical software. Use of the tool set is indispensable where software is required to be reliable and as error-free as possible, and its use brings in substantial time and cost savings, and efficiency

  13. Open source Modeling and optimization tools for Planning

    Energy Technology Data Exchange (ETDEWEB)

    Peles, S. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)

    2017-02-10

    Open source modeling and optimization tools for planning The existing tools and software used for planning and analysis in California are either expensive, difficult to use, or not generally accessible to a large number of participants. These limitations restrict the availability of participants for larger scale energy and grid studies in the state. The proposed initiative would build upon federal and state investments in open source software, and create and improve open source tools for use in the state planning and analysis activities. Computational analysis and simulation frameworks in development at national labs and universities can be brought forward to complement existing tools. An open source platform would provide a path for novel techniques and strategies to be brought into the larger community and reviewed by a broad set of stakeholders.

  14. Criteria and tools for scientific software quality measurements

    Energy Technology Data Exchange (ETDEWEB)

    Tseng, M Y [Previse Inc., Willowdale ON (Canada)

    1995-12-01

    Not all software used in the nuclear industry needs the rigorous formal verification, reliability testing and quality assessment that are being applied to safety critical software. Recently, however, there is increasing recognition that systematic and objective quality assessment of the scientific software used in design and safety analyses of nuclear facilities is necessary to support safety and licensing decisions. Because of the complexity and large size of these programs and the resource constraints faced by the AECB reviewer, it is desirable that appropriate automated tools are used wherever practical. To objectively assess the quality of software, a set of attributes of a software product by which its quality is described and evaluated must be established. These attributes must be relevant to the application domain of software under evaluation. To effectively assess the quality of software, metrics defining quantitative scale and method appropriate to determine the value of attributes need to be applied. To cost-effectively perform the evaluation, use of suitable automated tools is desirable. In this project, criteria for evaluating the quality of scientific software are presented; metrics for which those criteria can be evaluated are identified; a survey of automated tools to measure those metrics was conducted and the most appropriate tool (QA Fortran) was acquired; and the tool usage was demonstrated on three sample programs. (author) 5 refs.

  15. Criteria and tools for scientific software quality measurements

    International Nuclear Information System (INIS)

    Tseng, M.Y.

    1995-12-01

    Not all software used in the nuclear industry needs the rigorous formal verification, reliability testing and quality assessment that are being applied to safety critical software. Recently, however, there is increasing recognition that systematic and objective quality assessment of the scientific software used in design and safety analyses of nuclear facilities is necessary to support safety and licensing decisions. Because of the complexity and large size of these programs and the resource constraints faced by the AECB reviewer, it is desirable that appropriate automated tools are used wherever practical. To objectively assess the quality of software, a set of attributes of a software product by which its quality is described and evaluated must be established. These attributes must be relevant to the application domain of software under evaluation. To effectively assess the quality of software, metrics defining quantitative scale and method appropriate to determine the value of attributes need to be applied. To cost-effectively perform the evaluation, use of suitable automated tools is desirable. In this project, criteria for evaluating the quality of scientific software are presented; metrics for which those criteria can be evaluated are identified; a survey of automated tools to measure those metrics was conducted and the most appropriate tool (QA Fortran) was acquired; and the tool usage was demonstrated on three sample programs. (author) 5 refs

  16. Automated Source Code Analysis to Identify and Remove Software Security Vulnerabilities: Case Studies on Java Programs

    OpenAIRE

    Natarajan Meghanathan

    2013-01-01

    The high-level contribution of this paper is to illustrate the development of generic solution strategies to remove software security vulnerabilities that could be identified using automated tools for source code analysis on software programs (developed in Java). We use the Source Code Analyzer and Audit Workbench automated tools, developed by HP Fortify Inc., for our testing purposes. We present case studies involving a file writer program embedded with features for password validation, and ...

  17. Evaluation of static analysis tools used to assess software important to nuclear power plant safety

    Energy Technology Data Exchange (ETDEWEB)

    Ourghanlian, Alain [EDF Lab CHATOU, Simulation and Information Technologies for Power Generation Systems Department, EDF R and D, Cedex (France)

    2015-03-15

    We describe a comparative analysis of different tools used to assess safety-critical software used in nuclear power plants. To enhance the credibility of safety assessments and to optimize safety justification costs, Electricit e de France (EDF) investigates the use of methods and tools for source code semantic analysis, to obtain indisputable evidence and help assessors focus on the most critical issues. EDF has been using the PolySpace tool for more than 10 years. Currently, new industrial tools based on the same formal approach, Abstract Interpretation, are available. Practical experimentation with these new tools shows that the precision obtained on one of our shutdown systems software packages is substantially improved. In the first part of this article, we present the analysis principles of the tools used in our experimentation. In the second part, we present the main characteristics of protection-system software, and why these characteristics are well adapted for the new analysis tools.

  18. User Guide for the STAYSL PNNL Suite of Software Tools

    Energy Technology Data Exchange (ETDEWEB)

    Greenwood, Lawrence R.; Johnson, Christian D.

    2013-02-27

    The STAYSL PNNL software suite provides a set of tools for working with neutron activation rates measured in a nuclear fission reactor, an accelerator-based neutron source, or any neutron field to determine the neutron flux spectrum through a generalized least-squares approach. This process is referred to as neutron spectral adjustment since the preferred approach is to use measured data to adjust neutron spectra provided by neutron physics calculations. The input data consist of the reaction rates based on measured activities, an initial estimate of the neutron flux spectrum, neutron activation cross sections and their associated uncertainties (covariances), and relevant correction factors. The output consists of the adjusted neutron flux spectrum and associated covariance matrix, which is useful for neutron dosimetry and radiation damage calculations.

  19. Innovative Software Algorithms and Tools parallel sessions summary

    International Nuclear Information System (INIS)

    Gaines, Irwin

    2001-01-01

    A variety of results were presented in the poster and 5 parallel sessions of the Innovative Software, Algorithms and Tools (ISAT) sessions. I will briefly summarize these presentations and attempt to identify some unifying trends

  20. Software Tools for Measuring and Calculating Electromagnetic Shielding Effectiveness

    National Research Council Canada - National Science Library

    Tesny, Neal

    2005-01-01

    The evaluation and the analysis of high-altitude electromagnetic pulse response of shielded enclosures require the availability of software tools able to acquire data and calculate shielding effectiveness...

  1. Computer- Aided Design in Power Engineering Application of Software Tools

    CERN Document Server

    Stojkovic, Zlatan

    2012-01-01

    This textbooks demonstrates the application of software tools in solving a series of problems from the field of designing power system structures and systems. It contains four chapters: The first chapter leads the reader through all the phases necessary in the procedures of computer aided modeling and simulation. It guides through the complex problems presenting on the basis of eleven original examples. The second chapter presents  application of software tools in power system calculations of power systems equipment design. Several design example calculations are carried out using engineering standards like MATLAB, EMTP/ATP, Excel & Access, AutoCAD and Simulink. The third chapters focuses on the graphical documentation using a collection of software tools (AutoCAD, EPLAN, SIMARIS SIVACON, SIMARIS DESIGN) which enable the complete automation of the development of graphical documentation of a power systems. In the fourth chapter, the application of software tools in the project management in power systems ...

  2. Improving design processes through structured reflection : a prototype software tool

    NARCIS (Netherlands)

    Reymen, I.M.M.J.; Melby, E.

    2001-01-01

    A prototype software tool facilitating the use of a design method supporting structured reflection on design processes is presented. The prototype, called Echo, has been developed to explore the benefits of using a software system to facilitate the use of the design method. Both the prototype

  3. Use of Software Tools in Teaching Relational Database Design.

    Science.gov (United States)

    McIntyre, D. R.; And Others

    1995-01-01

    Discusses the use of state-of-the-art software tools in teaching a graduate, advanced, relational database design course. Results indicated a positive student response to the prototype of expert systems software and a willingness to utilize this new technology both in their studies and in future work applications. (JKP)

  4. ISWHM: Tools and Techniques for Software and System Health Management

    Science.gov (United States)

    Schumann, Johann; Mengshoel, Ole J.; Darwiche, Adnan

    2010-01-01

    This presentation presents status and results of research on Software Health Management done within the NRA "ISWHM: Tools and Techniques for Software and System Health Management." Topics include: Ingredients of a Guidance, Navigation, and Control System (GN and C); Selected GN and C Testbed example; Health Management of major ingredients; ISWHM testbed architecture; and Conclusions and next Steps.

  5. The Utility of Open Source Software in Military Systems

    National Research Council Canada - National Science Library

    Esperon, Agustin I; Munoz, Jose P; Tanneau, Jean M

    2005-01-01

    .... The companies involved were THALES and GMV. The MILOS project aimed to demonstrate benefits of Open Source Software in large software based military systems, by casting off constraints inherent to traditional proprietary COTS and by taking...

  6. Automated tools for safety-critical software

    International Nuclear Information System (INIS)

    Lapassat, A.M.

    1993-01-01

    The regulatory (DSIN), the utilities (EDF, CEA..) and the CEA-Institute for Protection and Nuclear Safety (IPSN) work together at the French nuclear safety. This paper presents a tool, called CLAIRE, for simulation and tests of different nuclear safety system. (TEC)

  7. A free software tool for the development of decision support systems

    Directory of Open Access Journals (Sweden)

    COLONESE, G

    2008-06-01

    Full Text Available This article describes PostGeoOlap, a free software open source tool for decision support that integrates OLAP (On-Line Analytical Processing and GIS (Geographical Information Systems. Besides describing the tool, we show how it can be used to achieve effective and low cost decision support that is adequate for small and medium companies and for small public offices.

  8. Open source software and minority languages: a priceless opportunity

    Directory of Open Access Journals (Sweden)

    Jordi Mas

    2003-04-01

    Full Text Available Open source software is a form of software that gives its users freedom. With the advent of the Internet, open source software has consolidated as a technically viable, financially sustainable alternative to proprietary software. Languages such as Breton, Galician, Gaelic and Catalan have seen very little development in the world of proprietary software because of the limitations imposed. In contrast, in the world of open source software these languages have been developed with notable success. Open source projects of the importance of the Mozilla browser, the GNOME environment and the GNU/Linux system have complete or partial translations in all these languages. Open source software presents an unprecedented opportunity for the development of minority languages, such as Catalan, in new technologies thanks to the freedom that they guarantee us.

  9. Integrated software tool automates MOV diagnosis

    International Nuclear Information System (INIS)

    Joshi, B.D.; Upadhyaya, B.R.

    1996-01-01

    This article reports that researchers at the University of Tennessee have developed digital signal processing software that takes the guesswork out of motor current signature analysis (MCSA). The federal testing regulations for motor-operated valves (MOV) used in nuclear power plants have recently come under critical scrutiny by the Nuclear Regulatory Commission (NRC) and the American Society of Mechanical Engineers (ASME). New ASME testing specifications mandate that all valves performing a safety function are to be tested -- not just ASME Code 1, 2 and 3 valves. The NRC will likely endorse the ASME regulations in the near future. Because of these changes, several utility companies have voluntarily expanded the scope of their in-service testing programs for MOVs, in spite of the additional expense

  10. Claire, a simulation and testing tool for critical softwares

    International Nuclear Information System (INIS)

    Gassino, J.; Henry, J.Y.

    1996-01-01

    The CEA and IPSN (Institute of Nuclear Protection and Safety) needs concerning the testing of critical softwares, have led to the development of the CLAIRE tool which is able to test the softwares without modification. This tool allows to graphically model the system and its environment and to include components into the model which observe and do not modify the behaviour of the system to be tested. The executable codes are integrated in the model. The tool uses target machine simulators (microprocessors). The technique used (the event simulation) allows to associate actions with events such as the execution of an instruction, the access to a variable etc.. The simulation results are exploited using graphic, states research and test cover measurement tools. In particular, this tool can give help to the evaluation of critical softwares with pre-existing components. (J.S.)

  11. The evolution of CACSD tools-a software engineering perspective

    DEFF Research Database (Denmark)

    Ravn, Ole; Szymkat, Maciej

    1992-01-01

    The earlier evolution of computer-aided control system design (CACSD) tools is discussed from a software engineering perspective. A model of the design process is presented as the basis for principles and requirements of future CACSD tools. Combinability, interfacing in memory, and an open...... workspace are seen as important concepts in CACSD. Some points are made about the problem of buy or make when new software is required, and the idea of buy and make is put forward. Emphasis is put on the time perspective and the life cycle of the software...

  12. Decision criteria for software component sourcing: steps towards a framework

    NARCIS (Netherlands)

    Kusters, R.J.; Pouwelse, L.; Martin, H.; Trienekens, J.J.M.; Hammoudi, Sl.; Maciaszek, L.; Missikoff, M.M.; Camp, O.; Cordeiro, J.

    2016-01-01

    Software developing organizations nowadays have a wide choice when it comes to sourcing software components. This choice ranges from developing or adapting in-house developed components via buying closed source components to utilizing open source components. This study seeks to determine criteria

  13. An Analysis of Open Source Security Software Products Downloads

    Science.gov (United States)

    Barta, Brian J.

    2014-01-01

    Despite the continued demand for open source security software, a gap in the identification of success factors related to the success of open source security software persists. There are no studies that accurately assess the extent of this persistent gap, particularly with respect to the strength of the relationships of open source software…

  14. Adoption of open source digital library software packages: a survey

    OpenAIRE

    Jose, Sanjo

    2007-01-01

    Open source digital library packages are gaining popularity nowadays. To build a digital library under economical conditions open source software is preferable. This paper tries to identify the extent of adoption of open source digital library software packages in various organizations through an online survey. It lays down the findings from the survey.

  15. SimPhospho: a software tool enabling confident phosphosite assignment.

    Science.gov (United States)

    Suni, Veronika; Suomi, Tomi; Tsubosaka, Tomoya; Imanishi, Susumu Y; Elo, Laura L; Corthals, Garry L

    2018-03-27

    Mass spectrometry combined with enrichment strategies for phosphorylated peptides has been successfully employed for two decades to identify sites of phosphorylation. However, unambiguous phosphosite assignment is considered challenging. Given that site-specific phosphorylation events function as different molecular switches, validation of phosphorylation sites is of utmost importance. In our earlier study we developed a method based on simulated phosphopeptide spectral libraries, which enables highly sensitive and accurate phosphosite assignments. To promote more widespread use of this method, we here introduce a software implementation with improved usability and performance. We present SimPhospho, a fast and user-friendly tool for accurate simulation of phosphopeptide tandem mass spectra. Simulated phosphopeptide spectral libraries are used to validate and supplement database search results, with a goal to improve reliable phosphoproteome identification and reporting. The presented program can be easily used together with the Trans-Proteomic Pipeline and integrated in a phosphoproteomics data analysis workflow. SimPhospho is available for Windows, Linux and Mac operating systems at https://sourceforge.net/projects/simphospho/. It is open source and implemented in C ++. A user's manual with detailed description of data analysis using SimPhospho as well as test data can be found as supplementary material of this article. Supplementary data are available at https://www.btk.fi/research/ computational-biomedicine/software/.

  16. PROTEINCHALLENGE: Crowd sourcing in proteomics analysis and software development

    DEFF Research Database (Denmark)

    Martin, Sarah F.; Falkenberg, Heiner; Dyrlund, Thomas Franck

    2013-01-01

    , including arguments for community-wide open source software development and “big data” compatible solutions for the future. For the meantime, we have laid out ten top tips for data processing. With these at hand, a first large-scale proteomics analysis hopefully becomes less daunting to navigate.......However there is clearly a real need for robust tools, standard operating procedures and general acceptance of best practises. Thus we submit to the proteomics community a call for a community-wide open set of proteomics analysis challenges—PROTEINCHALLENGE—that directly target and compare data analysis workflows......In large-scale proteomics studies there is a temptation, after months of experimental work, to plug resulting data into a convenient—if poorly implemented—set of tools, which may neither do the data justice nor help answer the scientific question. In this paper we have captured key concerns...

  17. Software for Use with Optoelectronic Measuring Tool

    Science.gov (United States)

    Ballard, Kim C.

    2004-01-01

    A computer program has been written to facilitate and accelerate the process of measurement by use of the apparatus described in "Optoelectronic Tool Adds Scale Marks to Photographic Images" (KSC-12201). The tool contains four laser diodes that generate parallel beams of light spaced apart at a known distance. The beams of light are used to project bright spots that serve as scale marks that become incorporated into photographic images (including film and electronic images). The sizes of objects depicted in the images can readily be measured by reference to the scale marks. The computer program is applicable to a scene that contains the laser spots and that has been imaged in a square pixel format that can be imported into a graphical user interface (GUI) generated by the program. It is assumed that the laser spots and the distance(s) to be measured all lie in the same plane and that the plane is perpendicular to the line of sight of the camera used to record the image

  18. Classifying Desirable Features of Software Visualization Tools for Corrective Maintenance

    NARCIS (Netherlands)

    Sensalire, Mariam; Ogao, Patrick; Telea, Alexandru

    2008-01-01

    We provide an evaluation of 15 software visualization tools applicable to corrective maintenance. The tasks supported as well as the techniques used are presented and graded based on the support level. By analyzing user acceptation of current tools, we aim to help developers to select what to

  19. Open Source Approach to Project Management Tools

    Directory of Open Access Journals (Sweden)

    Romeo MARGEA

    2011-01-01

    Full Text Available Managing large projects involving different groups of people and complex tasks can be challenging. The solution is to use Project management software, which allows a more efficient management of projects. However, famous project management systems can be costly and may require expensive custom servers. Even if free software is not as complex as Microsoft Project, is noteworthy to think that not all projects need all the features, amenities and power of such systems. There are free and open source software alternatives that meet the needs of most projects, and that allow Web access based on different platforms and locations. A starting stage in adopting an OSS in-house is finding and identifying existing open source solution. In this paper we present an overview of Open Source Project Management Software (OSPMS based on articles, reviews, books and developers’ web sites, about those that seem to be the most popular software in this category.

  20. Enhancing Software Engineering Education through Open Source Projects: Four Years of Students' Perspectives

    NARCIS (Netherlands)

    Papadopoulos, P.M.; Stamelos, I.G.; Meiszner, A.

    2015-01-01

    This paper presents the results after four years of running of an instructional method that utilizes free/libre open source software (FLOSS) projects as tools for teaching software engineering in formal education. In the last four academic years, a total of 408 juniors majoring in Informatics (in a

  1. JULIDE: a software tool for 3D reconstruction and statistical analysis of autoradiographic mouse brain sections.

    Directory of Open Access Journals (Sweden)

    Delphine Ribes

    Full Text Available In this article we introduce JULIDE, a software toolkit developed to perform the 3D reconstruction, intensity normalization, volume standardization by 3D image registration and voxel-wise statistical analysis of autoradiographs of mouse brain sections. This software tool has been developed in the open-source ITK software framework and is freely available under a GPL license. The article presents the complete image processing chain from raw data acquisition to 3D statistical group analysis. Results of the group comparison in the context of a study on spatial learning are shown as an illustration of the data that can be obtained with this tool.

  2. Open source tools for ATR development and performance evaluation

    Science.gov (United States)

    Baumann, James M.; Dilsavor, Ronald L.; Stubbles, James; Mossing, John C.

    2002-07-01

    Early in almost every engineering project, a decision must be made about tools; should I buy off-the-shelf tools or should I develop my own. Either choice can involve significant cost and risk. Off-the-shelf tools may be readily available, but they can be expensive to purchase and to maintain licenses, and may not be flexible enough to satisfy all project requirements. On the other hand, developing new tools permits great flexibility, but it can be time- (and budget-) consuming, and the end product still may not work as intended. Open source software has the advantages of both approaches without many of the pitfalls. This paper examines the concept of open source software, including its history, unique culture, and informal yet closely followed conventions. These characteristics influence the quality and quantity of software available, and ultimately its suitability for serious ATR development work. We give an example where Python, an open source scripting language, and OpenEV, a viewing and analysis tool for geospatial data, have been incorporated into ATR performance evaluation projects. While this case highlights the successful use of open source tools, we also offer important insight into risks associated with this approach.

  3. An Organizational-Technical Concept to Deal with Open Source Software License Terms

    Directory of Open Access Journals (Sweden)

    Sergius Dyck

    2016-06-01

    Full Text Available Open source software (OSS released under various license terms is widely used as third party libraries in today's software projects. To ensure open source compliance within an organization, a strategic approach to OSS management is needed. As basis for such an approach, we introduce an organizational-technical concept for dealing with the various OSS licenses by using procedural instructions and build automation software. The concept includes the careful consideration of OSS license conditions. The results obtained from this consideration and additional necessary commitments are documented in a so-called license playbook. We introduce procedure instructions enabling a consistent approach for software development using OSS libraries. The procedure instructions are described in a way such that they can be implemented for example for Java projects using the popular build automation tool Apache Maven and the software repository tool Nexus. We give guidance on how to realize such an implementation on basis of automation tools in practice.

  4. Core software security security at the source

    CERN Document Server

    Ransome, James

    2013-01-01

    First and foremost, Ransome and Misra have made an engaging book that will empower readers in both large and small software development and engineering organizations to build security into their products. This book clarifies to executives the decisions to be made on software security and then provides guidance to managers and developers on process and procedure. Readers are armed with firm solutions for the fight against cyber threats.-Dr. Dena Haritos Tsamitis. Carnegie Mellon UniversityIn the wake of cloud computing and mobile apps, the issue of software security has never been more importan

  5. On the Prospects and Concerns of Integrating Open Source Software Environment in Software Engineering Education

    Science.gov (United States)

    Kamthan, Pankaj

    2007-01-01

    Open Source Software (OSS) has introduced a new dimension in software community. As the development and use of OSS becomes prominent, the question of its integration in education arises. In this paper, the following practices fundamental to projects and processes in software engineering are examined from an OSS perspective: project management;…

  6. An Open Source Tool to Test Interoperability

    Science.gov (United States)

    Bermudez, L. E.

    2012-12-01

    Scientists interact with information at various levels from gathering of the raw observed data to accessing portrayed processed quality control data. Geoinformatics tools help scientist on the acquisition, storage, processing, dissemination and presentation of geospatial information. Most of the interactions occur in a distributed environment between software components that take the role of either client or server. The communication between components includes protocols, encodings of messages and managing of errors. Testing of these communication components is important to guarantee proper implementation of standards. The communication between clients and servers can be adhoc or follow standards. By following standards interoperability between components increase while reducing the time of developing new software. The Open Geospatial Consortium (OGC), not only coordinates the development of standards but also, within the Compliance Testing Program (CITE), provides a testing infrastructure to test clients and servers. The OGC Web-based Test Engine Facility, based on TEAM Engine, allows developers to test Web services and clients for correct implementation of OGC standards. TEAM Engine is a JAVA open source facility, available at Sourceforge that can be run via command line, deployed in a web servlet container or integrated in developer's environment via MAVEN. The TEAM Engine uses the Compliance Test Language (CTL) and TestNG to test HTTP requests, SOAP services and XML instances against Schemas and Schematron based assertions of any type of web service, not only OGC services. For example, the OGC Web Feature Service (WFS) 1.0.0 test has more than 400 test assertions. Some of these assertions includes conformance of HTTP responses, conformance of GML-encoded data; proper values for elements and attributes in the XML; and, correct error responses. This presentation will provide an overview of TEAM Engine, introduction of how to test via the OGC Testing web site and

  7. Exoskeletons, Robots and System Software: Tools for the Warfighter

    Science.gov (United States)

    2012-04-24

    Exoskeletons , Robots and System Software: Tools for the Warfighter? Paul Flanagan, Tuesday, April 24, 2012 11:15 am– 12:00 pm 1 “The views...Emerging technologies such as exoskeletons , robots , drones, and the underlying software are and will change the face of the battlefield. Warfighters will...global hub for educating, informing, and connecting Information Age leaders.” What is an exoskeleton ? An exoskeleton is a wearable robot suit that

  8. An online database for plant image analysis software tools

    OpenAIRE

    Lobet, Guillaume; Draye, Xavier; Périlleux, Claire

    2013-01-01

    Background: Recent years have seen an increase in methods for plant phenotyping using image analyses. These methods require new software solutions for data extraction and treatment. These solutions are instrumental in supporting various research pipelines, ranging from the localisation of cellular compounds to the quantification of tree canopies. However, due to the variety of existing tools and the lack of central repository, it is challenging for researchers to identify the software that is...

  9. Software tool for data mining and its applications

    Science.gov (United States)

    Yang, Jie; Ye, Chenzhou; Chen, Nianyi

    2002-03-01

    A software tool for data mining is introduced, which integrates pattern recognition (PCA, Fisher, clustering, hyperenvelop, regression), artificial intelligence (knowledge representation, decision trees), statistical learning (rough set, support vector machine), computational intelligence (neural network, genetic algorithm, fuzzy systems). It consists of nine function models: pattern recognition, decision trees, association rule, fuzzy rule, neural network, genetic algorithm, Hyper Envelop, support vector machine, visualization. The principle and knowledge representation of some function models of data mining are described. The software tool of data mining is realized by Visual C++ under Windows 2000. Nonmonotony in data mining is dealt with by concept hierarchy and layered mining. The software tool of data mining has satisfactorily applied in the prediction of regularities of the formation of ternary intermetallic compounds in alloy systems, and diagnosis of brain glioma.

  10. Software engineering and data management for automated payload experiment tool

    Science.gov (United States)

    Maddux, Gary A.; Provancha, Anna; Chattam, David

    1994-01-01

    The Microgravity Projects Office identified a need to develop a software package that will lead experiment developers through the development planning process, obtain necessary information, establish an electronic data exchange avenue, and allow easier manipulation/reformatting of the collected information. An MS-DOS compatible software package called the Automated Payload Experiment Tool (APET) has been developed and delivered. The objective of this task is to expand on the results of the APET work previously performed by University of Alabama in Huntsville (UAH) and provide versions of the software in a Macintosh and Windows compatible format. Appendix 1 science requirements document (SRD) Users Manual is attached.

  11. Software engineering techniques and CASE tools in RD13

    Science.gov (United States)

    Buono, S.; Gaponenko, I.; Jones, R.; Khodabandeh, A.; Mapelli, L.; Mornacchi, G.; Prigent, D.; Sanchez-Corral, E.; Skiadelli, M.; Toppers, A.; Duval, P. Y.; Ferrato, D.; Le Van Suu, A.; Qian, Z.; Rondot, C.; Ambrosini, G.; Fumagalli, G.; Polesello, G.; Aguer, M.; Huet, M.

    1994-12-01

    The RD13 project was approved in April 1991 for the development of a scalable data-taking system suitable for hosting various LHC studies. One of its goals is the exploitation of software engineering techniques, in order to indicate their overall suitability for data acquisition (DAQ), software design and implementation. This paper describes how such techniques have been applied to the development of components of the RD13 DAQ used in test-beam runs at CERN. We describe our experience with the Artifex CASE tool and its associated methodology. The issues raised when code generated by a CASE tool has to be integrated into an existing environment are also discussed.

  12. MyETL: A Java Software Tool to Extract, Transform, and Load Your Business

    Directory of Open Access Journals (Sweden)

    Michele Nuovo

    2015-12-01

    Full Text Available The project follows the development of a Java Software Tool that extracts data from Flat File (Fixed Length Record Type, CSV (Comma Separated Values, and XLS (Microsoft Excel 97-2003 Worksheet file, apply transformation to those sources, and finally load the data into the end target RDBMS. The software refers to a process known as ETL (Extract Transform and Load. Those kinds of systems are called ETL systems.

  13. PAnalyzer: A software tool for protein inference in shotgun proteomics

    Directory of Open Access Journals (Sweden)

    Prieto Gorka

    2012-11-01

    Full Text Available Abstract Background Protein inference from peptide identifications in shotgun proteomics must deal with ambiguities that arise due to the presence of peptides shared between different proteins, which is common in higher eukaryotes. Recently data independent acquisition (DIA approaches have emerged as an alternative to the traditional data dependent acquisition (DDA in shotgun proteomics experiments. MSE is the term used to name one of the DIA approaches used in QTOF instruments. MSE data require specialized software to process acquired spectra and to perform peptide and protein identifications. However the software available at the moment does not group the identified proteins in a transparent way by taking into account peptide evidence categories. Furthermore the inspection, comparison and report of the obtained results require tedious manual intervention. Here we report a software tool to address these limitations for MSE data. Results In this paper we present PAnalyzer, a software tool focused on the protein inference process of shotgun proteomics. Our approach considers all the identified proteins and groups them when necessary indicating their confidence using different evidence categories. PAnalyzer can read protein identification files in the XML output format of the ProteinLynx Global Server (PLGS software provided by Waters Corporation for their MSE data, and also in the mzIdentML format recently standardized by HUPO-PSI. Multiple files can also be read simultaneously and are considered as technical replicates. Results are saved to CSV, HTML and mzIdentML (in the case of a single mzIdentML input file files. An MSE analysis of a real sample is presented to compare the results of PAnalyzer and ProteinLynx Global Server. Conclusions We present a software tool to deal with the ambiguities that arise in the protein inference process. Key contributions are support for MSE data analysis by ProteinLynx Global Server and technical replicates

  14. Runtime Performance Monitoring Tool for RTEMS System Software

    Science.gov (United States)

    Cho, B.; Kim, S.; Park, H.; Kim, H.; Choi, J.; Chae, D.; Lee, J.

    2007-08-01

    RTEMS is a commercial-grade real-time operating system that supports multi-processor computers. However, there are not many development tools for RTEMS. In this paper, we report new RTEMS-based runtime performance monitoring tool. We have implemented a light weight runtime monitoring task with an extension to the RTEMS APIs. Using our tool, software developers can verify various performance- related parameters during runtime. Our tool can be used during software development phase and in-orbit operation as well. Our implemented target agent is light weight and has small overhead using SpaceWire interface. Efforts to reduce overhead and to add other monitoring parameters are currently under research.

  15. Intrusion Detection using Open Source Tools

    OpenAIRE

    Jack TIMOFTE

    2008-01-01

    We have witnessed in the recent years that open source tools have gained popularity among all types of users, from individuals or small businesses to large organizations and enterprises. In this paper we will present three open source IDS tools: OSSEC, Prelude and SNORT.

  16. PROTEINCHALLENGE: Crowd sourcing in proteomics analysis and software development

    DEFF Research Database (Denmark)

    Martin, Sarah F.; Falkenberg, Heiner; Dyrlund, Thomas Franck

    2013-01-01

    , including arguments for community-wide open source software development and “big data” compatible solutions for the future. For the meantime, we have laid out ten top tips for data processing. With these at hand, a first large-scale proteomics analysis hopefully becomes less daunting to navigate......, with the aim of setting a community-driven gold standard for data handling, reporting and sharing. This article is part of a Special Issue entitled: New Horizons and Applications for Proteomics [EuPA 2012].......In large-scale proteomics studies there is a temptation, after months of experimental work, to plug resulting data into a convenient—if poorly implemented—set of tools, which may neither do the data justice nor help answer the scientific question. In this paper we have captured key concerns...

  17. Open source IPSEC software in manned and unmanned space missions

    Science.gov (United States)

    Edwards, Jacob

    Network security is a major topic of research because cyber attackers pose a threat to national security. Securing ground-space communications for NASA missions is important because attackers could endanger mission success and human lives. This thesis describes how an open source IPsec software package was used to create a secure and reliable channel for ground-space communications. A cost efficient, reproducible hardware testbed was also created to simulate ground-space communications. The testbed enables simulation of low-bandwidth and high latency communications links to experiment how the open source IPsec software reacts to these network constraints. Test cases were built that allowed for validation of the testbed and the open source IPsec software. The test cases also simulate using an IPsec connection from mission control ground routers to points of interest in outer space. Tested open source IPsec software did not meet all the requirements. Software changes were suggested to meet requirements.

  18. Adoption of open source software in library management: an ...

    African Journals Online (AJOL)

    This literature and practical knowledge based opinion paper explored Koha software, bringing to limelight its applicability in the library. The various modules contained in the software (Circulation, Patrons, Advanced Search/OPAC, Cataloguing, Serials, Acquisition, Report and Tools) and the various specific services that ...

  19. Open Source Software Compliance within the Government

    Science.gov (United States)

    2016-12-01

    of the software. Understanding how licensing fees work within OSS and the specific licenses can benefit the government in cost savings and increase...since it is provided at minimal or no cost and reduces the burden of creation. 4. An additional consideration relating to cost is that maintenance...concerns. DISCLAIMER: The contents of this report are not to be used for advertising , publication, or promotional purposes. Citation of trade names

  20. BEASTling: A software tool for linguistic phylogenetics using BEAST 2.

    Directory of Open Access Journals (Sweden)

    Luke Maurits

    Full Text Available We present a new open source software tool called BEASTling, designed to simplify the preparation of Bayesian phylogenetic analyses of linguistic data using the BEAST 2 platform. BEASTling transforms comparatively short and human-readable configuration files into the XML files used by BEAST to specify analyses. By taking advantage of Creative Commons-licensed data from the Glottolog language catalog, BEASTling allows the user to conveniently filter datasets using names for recognised language families, to impose monophyly constraints so that inferred language trees are backward compatible with Glottolog classifications, or to assign geographic location data to languages for phylogeographic analyses. Support for the emerging cross-linguistic linked data format (CLDF permits easy incorporation of data published in cross-linguistic linked databases into analyses. BEASTling is intended to make the power of Bayesian analysis more accessible to historical linguists without strong programming backgrounds, in the hopes of encouraging communication and collaboration between those developing computational models of language evolution (who are typically not linguists and relevant domain experts.

  1. BEASTling: A software tool for linguistic phylogenetics using BEAST 2

    Science.gov (United States)

    Forkel, Robert; Kaiping, Gereon A.; Atkinson, Quentin D.

    2017-01-01

    We present a new open source software tool called BEASTling, designed to simplify the preparation of Bayesian phylogenetic analyses of linguistic data using the BEAST 2 platform. BEASTling transforms comparatively short and human-readable configuration files into the XML files used by BEAST to specify analyses. By taking advantage of Creative Commons-licensed data from the Glottolog language catalog, BEASTling allows the user to conveniently filter datasets using names for recognised language families, to impose monophyly constraints so that inferred language trees are backward compatible with Glottolog classifications, or to assign geographic location data to languages for phylogeographic analyses. Support for the emerging cross-linguistic linked data format (CLDF) permits easy incorporation of data published in cross-linguistic linked databases into analyses. BEASTling is intended to make the power of Bayesian analysis more accessible to historical linguists without strong programming backgrounds, in the hopes of encouraging communication and collaboration between those developing computational models of language evolution (who are typically not linguists) and relevant domain experts. PMID:28796784

  2. Knickpoint finder: A software tool that improves neotectonic analysis

    Science.gov (United States)

    Queiroz, G. L.; Salamuni, E.; Nascimento, E. R.

    2015-03-01

    This work presents a new software tool for morphometric analysis of drainage networks based on the methods of Hack (1973) and Etchebehere et al. (2004). This tool is applicable to studies of morphotectonics and neotectonics. The software used a digital elevation model (DEM) to identify the relief breakpoints along drainage profiles (knickpoints). The program was coded in Python for use on the ArcGIS platform and is called Knickpoint Finder. A study area was selected to test and evaluate the software's ability to analyze and identify neotectonic morphostructures based on the morphology of the terrain. For an assessment of its validity, we chose an area of the James River basin, which covers most of the Piedmont area of Virginia (USA), which is an area of constant intraplate seismicity and non-orogenic active tectonics and exhibits a relatively homogeneous geodesic surface currently being altered by the seismogenic features of the region. After using the tool in the chosen area, we found that the knickpoint locations are associated with the geologic structures, epicenters of recent earthquakes, and drainages with rectilinear anomalies. The regional analysis demanded the use of a spatial representation of the data after processing using Knickpoint Finder. The results were satisfactory in terms of the correlation of dense areas of knickpoints with active lineaments and the rapidity of the identification of deformed areas. Therefore, this software tool may be considered useful in neotectonic analyses of large areas and may be applied to any area where there is DEM coverage.

  3. Knowledge Architect : A Tool Suite for Managing Software Architecture Knowledge

    NARCIS (Netherlands)

    Liang, Peng; Jansen, Anton; Avgeriou, Paris

    2009-01-01

    Management of software architecture knowledge (AK) is vital for improving an organization’s architectural capabilities. To support the architecting process within our industrial partner: Astron, the Dutch radio astronomy institute, we implemented the Knowledge Architect (KA): a tool suite for

  4. TEST (Toxicity Estimation Software Tool) Ver 4.1

    Science.gov (United States)

    The Toxicity Estimation Software Tool (T.E.S.T.) has been developed to allow users to easily estimate toxicity and physical properties using a variety of QSAR methodologies. T.E.S.T allows a user to estimate toxicity without requiring any external programs. Users can input a chem...

  5. Metabolic interrelationships software application: Interactive learning tool for intermediary metabolism

    NARCIS (Netherlands)

    A.J.M. Verhoeven (Adrie); M. Doets (Mathijs); J.M.J. Lamers (Jos); J.F. Koster (Johan)

    2005-01-01

    textabstractWe developed and implemented the software application titled Metabolic Interrelationships as a self-learning and -teaching tool for intermediary metabolism. It is used by undergraduate medical students in an integrated organ systems-based and disease-oriented core curriculum, which

  6. Software Tools: A One-Semester Secondary School Computer Course.

    Science.gov (United States)

    Bromley, John; Lakatos, John

    1985-01-01

    Provides a course outline, describes equipment and teacher requirements, discusses student evaluation and course outcomes, and details the computer programs used in a high school course. The course is designed to teach students use of the microcomputer as a tool through hands-on experience with a variety of commercial software programs. (MBR)

  7. OST: analysis tool for real time software by simulation of material and software environments

    International Nuclear Information System (INIS)

    Boulc'h; Le Meur; Lapassat; Salichon; Segalard

    1988-07-01

    The utilization of microprocessors systems in a nuclear installation control oblige a great operation safety in the installation operation and in the environment protection. For the safety analysis of these installations the Institute of Protection and Nuclear Safety (IPSN) will dispose tools which permit to make controls during all the life of the software. The simulation and test tool (OST) which have been created is completely made by softwares. It is used on VAX calculators and can be easily transportable on other calculators [fr

  8. Software engineering capability for Ada (GRASP/Ada Tool)

    Science.gov (United States)

    Cross, James H., II

    1995-01-01

    The GRASP/Ada project (Graphical Representations of Algorithms, Structures, and Processes for Ada) has successfully created and prototyped a new algorithmic level graphical representation for Ada software, the Control Structure Diagram (CSD). The primary impetus for creation of the CSD was to improve the comprehension efficiency of Ada software and, as a result, improve reliability and reduce costs. The emphasis has been on the automatic generation of the CSD from Ada PDL or source code to support reverse engineering and maintenance. The CSD has the potential to replace traditional prettyprinted Ada Source code. A new Motif compliant graphical user interface has been developed for the GRASP/Ada prototype.

  9. Epistemic Communities, Situated Learning and Open Source Software Development

    DEFF Research Database (Denmark)

    Edwards, Kasper

    2001-01-01

    This paper analyses open source software (OSS) development as an epistemic community where each individual project is perceived as a single epistemic community. OSS development is a learning process where the involved parties contribute to, and learn from the community. It is discovered that theory...... of epistemic communities does indeed contribute to the understanding of open source software development. But, the important learning process of open source software development is not readily explained. The paper then introduces situated learning and legitimate peripheral participation as theoretical...

  10. Open Source and Proprietary Project Management Tools for SMEs.

    Directory of Open Access Journals (Sweden)

    Veronika Abramova

    2017-05-01

    Full Text Available The dimensional growth and increasing difficulty in project management promoted the development of different tools that serve to facilitate project management and track project schedule, resources and overall progress. These tools offer a variety of features, from task and time management, up to integrated CRM (Customer Relationship Management and ERP (Enterprise Resource Planning modules. Currently, a large number of project management software is available, to assist project team during the entire project lifecycle. We present the main differences between open source and proprietary project management tools and how those could be important for SMEs, describing the key features and how those can assist the project manager and the development team. In this paper, we analyse four open-source project management tools: OpenProject, ProjectLibre, Redmine, LibrePlan and four proprietary tools: Bitrix24, JIRA, Microsoft Project and Asana.

  11. Developing an Open Source Option for NASA Software

    Science.gov (United States)

    Moran, Patrick J.; Parks, John W. (Technical Monitor)

    2003-01-01

    We present arguments in favor of developing an Open Source option for NASA software; in particular we discuss how Open Source is compatible with NASA's mission. We compare and contrast several of the leading Open Source licenses, and propose one - the Mozilla license - for use by NASA. We also address some of the related issues for NASA with respect to Open Source. In particular, we discuss some of the elements in the External Release of NASA Software document (NPG 2210.1A) that will likely have to be changed in order to make Open Source a reality withm the agency.

  12. Software simulation: a tool for enhancing control system design

    International Nuclear Information System (INIS)

    Sze, B.; Ridgway, G.H.

    2008-01-01

    The creation, implementation and management of engineering design tools are important to the quality and efficiency of any large engineering project. Some of the most complicated tools to develop are system simulators. The development and implementation of system simulators to support replacement fuel handling control systems is of particular interest to the Canadian nuclear industry given the current age of installations and the risk of obsolescence to many utilities. The use of such simulator tools has been known to significantly improve successful deployment of new software packages and maintenance-related software changes while reducing the time required for their overall development. Moreover, these simulation systems can also serve as operator training stations and provide a virtual environment for site engineers to test operational changes before they are uploaded to the actual system. (author)

  13. A software communication tool for the tele-ICU.

    Science.gov (United States)

    Pimintel, Denise M; Wei, Shang Heng; Odor, Alberto

    2013-01-01

    The Tele Intensive Care Unit (tele-ICU) supports a high volume, high acuity population of patients. There is a high-volume of incoming and outgoing calls, especially during the evening and night hours, through the tele-ICU hubs. The tele-ICU clinicians must be able to communicate effectively to team members in order to support the care of complex and critically ill patients while supporting and maintaining a standard to improve time to intervention. This study describes a software communication tool that will improve the time to intervention, over the paper-driven communication format presently used in the tele-ICU. The software provides a multi-relational database of message instances to mine information for evaluation and quality improvement for all entities that touch the tele-ICU. The software design incorporates years of critical care and software design experience combined with new skills acquired in an applied Health Informatics program. This software tool will function in the tele-ICU environment and perform as a front-end application that gathers, routes, and displays internal communication messages for intervention by priority and provider.

  14. Featureous: A Tool for Feature-Centric Analysis of Java Software

    DEFF Research Database (Denmark)

    Olszak, Andrzej; Jørgensen, Bo Nørregaard

    2010-01-01

    Feature-centric comprehension of source code is necessary for incorporating user-requested modifications during software evolution and maintenance. However, such comprehension is difficult to achieve in case of large object-oriented programs due to the size, complexity, and implicit character...... of mappings between features and source code. To support programmers in overcoming these difficulties, we present a feature-centric analysis tool, Featureous. Our tool extends the NetBeans IDE with mechanisms for efficient location of feature implementations in legacy source code, and an extensive analysis...

  15. Open-source software gets boost at UN

    CERN Multimedia

    Schenker, J L

    2003-01-01

    "A months-long backroom battle led by Brazil, with support from India, South Africa and China, against the United States over open-source software took center stage Wednesday at the UN information summit meeting" (1 page)

  16. The Utility of Open Source Software in Military Systems

    National Research Council Canada - National Science Library

    Esperon, Agustin I; Munoz, Jose P; Tanneau, Jean M

    2005-01-01

    The MILOS (Military Systems based on Open-source Software) project was a European research program in the Eurofinder framework, attached to the CEPA 6 and co-financed by the Ministry of Defence of France and Spain...

  17. CLAIRE, an event-driven simulation tool for testing software

    International Nuclear Information System (INIS)

    Raguideau, J.; Schoen, D.; Henry, J.Y.; Boulc'h, J.

    1994-06-01

    CLAIRE is a software tool created to perform validations on executable codes or on specifications of distributed real-time applications for nuclear safety. CLAIRE can be used both to verify the safety properties by modelling the specifications, and also to validate the final code by simulating the behaviour of its equipment and software interfaces. It can be used to observe and provide dynamic control of the simulation process, and also to record changes to the simulated data for off-line analysis. (R.P.)

  18. What's New in Software? Hot New Tool: The Hypertext.

    Science.gov (United States)

    Hedley, Carolyn N.

    1989-01-01

    This article surveys recent developments in hypertext software, a highly interactive nonsequential reading/writing/database approach to research and teaching that allows paths to be created through related materials including text, graphics, video, and animation sources. Described are uses, advantages, and problems of hypertext. (PB)

  19. An Investigation of an Open-Source Software Development Environment in a Software Engineering Graduate Course

    Science.gov (United States)

    Ge, Xun; Huang, Kun; Dong, Yifei

    2010-01-01

    A semester-long ethnography study was carried out to investigate project-based learning in a graduate software engineering course through the implementation of an Open-Source Software Development (OSSD) learning environment, which featured authentic projects, learning community, cognitive apprenticeship, and technology affordances. The study…

  20. SDMdata: A Web-Based Software Tool for Collecting Species Occurrence Records.

    Directory of Open Access Journals (Sweden)

    Xiaoquan Kong

    Full Text Available It is important to easily and efficiently obtain high quality species distribution data for predicting the potential distribution of species using species distribution models (SDMs. There is a need for a powerful software tool to automatically or semi-automatically assist in identifying and correcting errors. Here, we use Python to develop a web-based software tool (SDMdata to easily collect occurrence data from the Global Biodiversity Information Facility (GBIF and check species names and the accuracy of coordinates (latitude and longitude. It is an open source software (GNU Affero General Public License/AGPL licensed allowing anyone to access and manipulate the source code. SDMdata is available online free of charge from .

  1. Software Tools to Support the Assessment of System Health

    Science.gov (United States)

    Melcher, Kevin J.

    2013-01-01

    This presentation provides an overview of three software tools that were developed by the NASA Glenn Research Center to support the assessment of system health: the Propulsion Diagnostic Method Evaluation Strategy (ProDIMES), the Systematic Sensor Selection Strategy (S4), and the Extended Testability Analysis (ETA) tool. Originally developed to support specific NASA projects in aeronautics and space, these software tools are currently available to U.S. citizens through the NASA Glenn Software Catalog. The ProDiMES software tool was developed to support a uniform comparison of propulsion gas path diagnostic methods. Methods published in the open literature are typically applied to dissimilar platforms with different levels of complexity. They often address different diagnostic problems and use inconsistent metrics for evaluating performance. As a result, it is difficult to perform a one ]to ]one comparison of the various diagnostic methods. ProDIMES solves this problem by serving as a theme problem to aid in propulsion gas path diagnostic technology development and evaluation. The overall goal is to provide a tool that will serve as an industry standard, and will truly facilitate the development and evaluation of significant Engine Health Management (EHM) capabilities. ProDiMES has been developed under a collaborative project of The Technical Cooperation Program (TTCP) based on feedback provided by individuals within the aircraft engine health management community. The S4 software tool provides a framework that supports the optimal selection of sensors for health management assessments. S4 is structured to accommodate user ]defined applications, diagnostic systems, search techniques, and system requirements/constraints. One or more sensor suites that maximize this performance while meeting other user ]defined system requirements that are presumed to exist. S4 provides a systematic approach for evaluating combinations of sensors to determine the set or sets of

  2. Comparison of quality control software tools for diffusion tensor imaging.

    Science.gov (United States)

    Liu, Bilan; Zhu, Tong; Zhong, Jianhui

    2015-04-01

    Image quality of diffusion tensor imaging (DTI) is critical for image interpretation, diagnostic accuracy and efficiency. However, DTI is susceptible to numerous detrimental artifacts that may impair the reliability and validity of the obtained data. Although many quality control (QC) software tools are being developed and are widely used and each has its different tradeoffs, there is still no general agreement on an image quality control routine for DTIs, and the practical impact of these tradeoffs is not well studied. An objective comparison that identifies the pros and cons of each of the QC tools will be helpful for the users to make the best choice among tools for specific DTI applications. This study aims to quantitatively compare the effectiveness of three popular QC tools including DTI studio (Johns Hopkins University), DTIprep (University of North Carolina at Chapel Hill, University of Iowa and University of Utah) and TORTOISE (National Institute of Health). Both synthetic and in vivo human brain data were used to quantify adverse effects of major DTI artifacts to tensor calculation as well as the effectiveness of different QC tools in identifying and correcting these artifacts. The technical basis of each tool was discussed, and the ways in which particular techniques affect the output of each of the tools were analyzed. The different functions and I/O formats that three QC tools provide for building a general DTI processing pipeline and integration with other popular image processing tools were also discussed. Copyright © 2015 Elsevier Inc. All rights reserved.

  3. Improving Data Catalogs with Free and Open Source Software

    Science.gov (United States)

    Schweitzer, R.; Hankin, S.; O'Brien, K.

    2013-12-01

    The Global Earth Observation Integrated Data Environment (GEO-IDE) is NOAA's effort to successfully integrate data and information with partners in the national US-Global Earth Observation System (US-GEO) and the international Global Earth Observation System of Systems (GEOSS). As part of the GEO-IDE, the Unified Access Framework (UAF) is working to build momentum towards the goal of increased data integration and interoperability. The UAF project is moving towards this goal with an approach that includes leveraging well known and widely used standards, as well as free and open source software. The UAF project shares the widely held conviction that the use of data standards is a key ingredient necessary to achieve interoperability. Many community-based consensus standards fail, though, due to poor compliance. Compliance problems emerge for many reasons: because the standards evolve through versions, because documentation is ambiguous or because individual data providers find the standard inadequate as-is to meet their special needs. In addition, minimalist use of standards will lead to a compliant service, but one which is of low quality. In this presentation, we will be discussing the UAF effort to build a catalog cleaning tool which is designed to crawl THREDDS catalogs, analyze the data available, and then build a 'clean' catalog of data which is standards compliant and has a uniform set of data access services available. These data services include, among others, OPeNDAP, Web Coverage Service (WCS) and Web Mapping Service (WMS). We will also discuss how we are utilizing free and open source software and services to both crawl, analyze and build the clean data catalog, as well as our efforts to help data providers improve their data catalogs. We'll discuss the use of open source software such as DataNucleus, Thematic Realtime Environmental Distributed Data Services (THREDDS), ncISO and the netCDF Java Common Data Model (CDM). We'll also demonstrate how we are

  4. The case for open-source software in drug discovery.

    Science.gov (United States)

    DeLano, Warren L

    2005-02-01

    Widespread adoption of open-source software for network infrastructure, web servers, code development, and operating systems leads one to ask how far it can go. Will "open source" spread broadly, or will it be restricted to niches frequented by hopeful hobbyists and midnight hackers? Here we identify reasons for the success of open-source software and predict how consumers in drug discovery will benefit from new open-source products that address their needs with increased flexibility and in ways complementary to proprietary options.

  5. Introducing Product Lines through Open Source Tools

    OpenAIRE

    Haugen, Øystein

    2008-01-01

    We present an approach to introducing product lines to companies that lower their initial risk by applying open source tools and a smooth learning curve into the use and creation of domain specific modeling combined with standardized variability modeling.

  6. Software tools for electrical quality assurance in the LHC

    International Nuclear Information System (INIS)

    Bednarek, M.; Ludwin, J.

    2012-01-01

    There are over 1600 superconducting magnet circuits in the LHC machine. Many of them consist of a large number of components electrically connected in series. This enhances the sensitivity of the whole circuits to electrical faults of individual components. Furthermore, circuits are equipped with a large number of instrumentation wires, which are exposed to accidental damage or swapping. In order to ensure safe operation, an Electrical Quality Assurance (ELQA) campaign is needed after each thermal cycle. Due to the complexity of the circuits, as well as their distant geographical distribution (tunnel of 27 km circumference divided in 8 sectors), suitable software and hardware platforms had to be developed. The software combines an Oracle database, LabView data acquisition applications and PHP-based web follow-up tools. This paper describes the software used for the ELQA of the LHC. (authors)

  7. Software Tools for Electrical Quality Assurance in the LHC

    CERN Document Server

    Bednarek, Mateusz

    2011-01-01

    There are over 1600 superconducting magnet circuits in the LHC machine. Many of them consist of a large number of components electrically connected in series. This enhances the sensitivity of the whole circuits to electrical faults of individual components. Furthermore, circuits are equipped with a large number of instrumentation wires, which are exposed to accidental damage or swapping. In order to ensure safe operation, an Electrical Quality Assurance (ELQA) campaign is needed after each thermal cycle. Due to the complexity of the circuits, as well as their distant geographical distribution (tunnel of 27km circumference divided in 8 sectors), suitable software and hardware platforms had to be developed. The software combines an Oracle database, LabView data acquisition applications and PHP-based web follow-up tools. This paper describes the software used for the ELQA of the LHC.

  8. Beyond Open Source: Evaluating the Community Availability of Software

    Directory of Open Access Journals (Sweden)

    Bret Davidson

    2016-01-01

    Full Text Available The Code4Lib community has produced an increasingly impressive collection of open source software over the last decade, but much of this creative work remains out of reach for large portions of the library community. Do the relatively privileged institutions represented by a majority of Code4Lib participants have a professional responsibility to support the adoption of their innovations? Drawing from old and new software packaging and distribution approaches (from freeware to Docker, we propose extending the open source software values of collaboration and transparency to include the wide and affordable distribution of software. We believe this will not only simplify the process of sharing our applications within the library community, but also make it possible for less well-resourced institutions to actually use our software. We identify areas of need, present our experiences with the users of our own open source projects, discuss our attempts to go beyond open source, propose a preliminary set of technology availability performance indicators for evaluating software availability, and make an argument for the internal value of supporting and encouraging a vibrant library software ecosystem.

  9. Governance of Open Source Software Foundations: Who Holds the Power?

    Directory of Open Access Journals (Sweden)

    Ludovico Prattico

    2012-12-01

    Full Text Available The research reported in this article attempts to discover who holds the power in open source software foundations through the analysis of governance documents. Artificial neural network analysis is used to analyse the content of the bylaws of six open source foundations (Apache, Eclipse, GNOME, Plone, Python, and SPI for the purpose of identifying power structures. Results of the research suggest that: i the actions of an open source software foundation are centered around one of three groups: Members, Chairman/President/Executive Director, and Board of Directors; ii in only one of the six foundations is the Board of Directors responsible for both the community and the product; and iii artificial neural network analysis of the content of bylaws provides unbiased insights of the power structure of open source software foundations. These results may prove useful to those who contribute to open source foundations and use their products and services.

  10. Development to requirements for a procedures software tool

    International Nuclear Information System (INIS)

    Yasutake, J.Y.; Hachiro Isoda

    1993-01-01

    In 1989, the Electric Power Research Institute (EPRI) and the Central Research Institute of the Electric Power Industry (CRIEPI) in Japan initiated a joint research program to investigate various interventions to reduce personnel errors and inefficiencies in the maintenance of nuclear power plants. This program, consisting of several interrelated projects, was initiated because of the mutual recognition of the importance of the human element in the efficient and safe operation of utilities and the continuing need to enhance personnel performance to sustain plant safety and availability. This paper summarizes one of the projects, jointly funded by EPRI and CRIEPI, to analyze the requirements for, and prepare a functional description of, a procedures software tool (PST). The primary objective of this project was to develop a description of the features and functions of a software tool that would help procedure writers to improve the quality of maintenance and testing procedures, thereby enhancing the performance of both procedure writers and maintenance personnel

  11. C++ software quality in the ATLAS experiment: tools and experience

    CERN Document Server

    AUTHOR|(INSPIRE)INSPIRE-00236968; The ATLAS collaboration; Kluth, Stefan; Seuster, Rolf; Snyder, Scott; Obreshkov, Emil; Roe, Shaun; Sherwood, Peter; Stewart, Graeme

    2017-01-01

    In this paper we explain how the C++ code quality is managed in ATLAS using a range of tools from compile-time through to run time testing and reflect on the substantial progress made in the last two years largely through the use of static analysis tools such as Coverity®, an industry-standard tool which enables quality comparison with general open source C++ code. Other available code analysis tools are also discussed, as is the role of unit testing with an example of how the GoogleTest framework can be applied to our codebase.

  12. C++ software quality in the ATLAS experiment: tools and experience

    Science.gov (United States)

    Martin-Haugh, S.; Kluth, S.; Seuster, R.; Snyder, S.; Obreshkov, E.; Roe, S.; Sherwood, P.; Stewart, G. A.

    2017-10-01

    In this paper we explain how the C++ code quality is managed in ATLAS using a range of tools from compile-time through to run time testing and reflect on the substantial progress made in the last two years largely through the use of static analysis tools such as Coverity®, an industry-standard tool which enables quality comparison with general open source C++ code. Other available code analysis tools are also discussed, as is the role of unit testing with an example of how the GoogleTest framework can be applied to our codebase.

  13. C++ Software Quality in the ATLAS Experiment: Tools and Experience

    CERN Document Server

    Kluth, Stefan; The ATLAS collaboration; Obreshkov, Emil; Roe, Shaun; Seuster, Rolf; Snyder, Scott; Stewart, Graeme

    2016-01-01

    The ATLAS experiment at CERN uses about six million lines of code and currently has about 420 developers whose background is largely from physics. In this paper we explain how the C++ code quality is managed using a range of tools from compile-time through to run time testing and reflect on the great progress made in the last year largely through the use of static analysis tools such as Coverity®, an industry-standard tool which enables quality comparison with general open source C++ code. Other tools including cppcheck, Include-What-You-Use and run-time 'sanitizers' are also discussed.

  14. BioContainers: an open-source and community-driven framework for software standardization

    Science.gov (United States)

    da Veiga Leprevost, Felipe; Grüning, Björn A.; Alves Aflitos, Saulo; Röst, Hannes L.; Uszkoreit, Julian; Barsnes, Harald; Vaudel, Marc; Moreno, Pablo; Gatto, Laurent; Weber, Jonas; Bai, Mingze; Jimenez, Rafael C.; Sachsenberg, Timo; Pfeuffer, Julianus; Vera Alvarez, Roberto; Griss, Johannes; Nesvizhskii, Alexey I.; Perez-Riverol, Yasset

    2017-01-01

    Abstract Motivation BioContainers (biocontainers.pro) is an open-source and community-driven framework which provides platform independent executable environments for bioinformatics software. BioContainers allows labs of all sizes to easily install bioinformatics software, maintain multiple versions of the same software and combine tools into powerful analysis pipelines. BioContainers is based on popular open-source projects Docker and rkt frameworks, that allow software to be installed and executed under an isolated and controlled environment. Also, it provides infrastructure and basic guidelines to create, manage and distribute bioinformatics containers with a special focus on omics technologies. These containers can be integrated into more comprehensive bioinformatics pipelines and different architectures (local desktop, cloud environments or HPC clusters). Availability and Implementation The software is freely available at github.com/BioContainers/. Contact yperez@ebi.ac.uk PMID:28379341

  15. BioContainers: an open-source and community-driven framework for software standardization.

    Science.gov (United States)

    da Veiga Leprevost, Felipe; Grüning, Björn A; Alves Aflitos, Saulo; Röst, Hannes L; Uszkoreit, Julian; Barsnes, Harald; Vaudel, Marc; Moreno, Pablo; Gatto, Laurent; Weber, Jonas; Bai, Mingze; Jimenez, Rafael C; Sachsenberg, Timo; Pfeuffer, Julianus; Vera Alvarez, Roberto; Griss, Johannes; Nesvizhskii, Alexey I; Perez-Riverol, Yasset

    2017-08-15

    BioContainers (biocontainers.pro) is an open-source and community-driven framework which provides platform independent executable environments for bioinformatics software. BioContainers allows labs of all sizes to easily install bioinformatics software, maintain multiple versions of the same software and combine tools into powerful analysis pipelines. BioContainers is based on popular open-source projects Docker and rkt frameworks, that allow software to be installed and executed under an isolated and controlled environment. Also, it provides infrastructure and basic guidelines to create, manage and distribute bioinformatics containers with a special focus on omics technologies. These containers can be integrated into more comprehensive bioinformatics pipelines and different architectures (local desktop, cloud environments or HPC clusters). The software is freely available at github.com/BioContainers/. yperez@ebi.ac.uk. © The Author(s) 2017. Published by Oxford University Press.

  16. Implementation of an OAIS Repository Using Free, Open Source Software

    Science.gov (United States)

    Flathers, E.; Gessler, P. E.; Seamon, E.

    2015-12-01

    The Northwest Knowledge Network (NKN) is a regional data repository located at the University of Idaho that focuses on the collection, curation, and distribution of research data. To support our home institution and others in the region, we offer services to researchers at all stages of the data lifecycle—from grant application and data management planning to data distribution and archive. In this role, we recognize the need to work closely with other data management efforts at partner institutions and agencies, as well as with larger aggregation efforts such as our state geospatial data clearinghouses, data.gov, DataONE, and others. In the past, one of our challenges with monolithic, prepackaged data management solutions is that customization can be difficult to implement and maintain, especially as new versions of the software are released that are incompatible with our local codebase. Our solution is to break the monolith up into its constituent parts, which offers us several advantages. First, any customizations that we make are likely to fall into areas that can be accessed through Application Program Interfaces (API) that are likely to remain stable over time, so our code stays compatible. Second, as components become obsolete or insufficient to meet new demands that arise, we can replace the individual components with minimal effect on the rest of the infrastructure, causing less disruption to operations. Other advantages include increased system reliability, staggered rollout of new features, enhanced compatibility with legacy systems, reduced dependence on a single software company as a point of failure, and the separation of development into manageable tasks. In this presentation, we describe our application of the Service Oriented Architecture (SOA) design paradigm to assemble a data repository that conforms to the Open Archival Information System (OAIS) Reference Model primarily using a collection of free and open-source software. We detail the design

  17. REVEAL - A tool for rule driven analysis of safety critical software

    International Nuclear Information System (INIS)

    Miedl, H.; Kersken, M.

    1998-01-01

    As the determination of ultrahigh reliability figures for safety critical software is hardly possible, national and international guidelines and standards give mainly requirements for the qualitative evaluation of software. An analysis whether all these requirements are fulfilled is time and effort consuming and prone to errors, if performed manually by analysts, and should instead be dedicated to tools as far as possible. There are many ''general-purpose'' software analysis tools, both static and dynamic, which help analyzing the source code. However, they are not designed to assess the adherence to specific requirements of guidelines and standards in the nuclear field. Against the background of the development of I and C systems in the nuclear field which are based on digital techniques and implemented in high level language, it is essential that the assessor or licenser has a tool with which he can automatically and uniformly qualify as many aspects as possible of the high level language software. For this purpose the software analysis tool REVEAL has been developed at ISTec and the Halden Reactor Project. (author)

  18. COMSY - A Software Tool for Aging and Plant Life Management

    International Nuclear Information System (INIS)

    Zander, Andre; Nopper, Helmut

    2012-01-01

    A Plant-wide and systematic Aging and Plant Life Management is essential for the safe operation and/or availability of nuclear power plants. The Aging Management (AM) has the objective to monitor and control degradation effects for safety relevant Systems, Structures and Components (SSCs) which may compromise safety functions of the plant. The Plant Life Management (PLM) methodology also includes aging surveillance for availability relevant SSCs. AM and PLM cover mechanical components, electrical and I and C systems and civil structures All Aging and Plant Life Management rules call for a comprehensive approach, requiring the systematic collection of various aging and safety relevant data on a plant-wide basis. This data needs to be serviced and periodically evaluated. Due to the complexity of the process, this activity needs to be supported by a qualified software tool for the management of aging relevant data and associated documents (approx. 30 000 SSCs). In order to support the power plant operators AREVA NP has developed the software tool COMSY. The COMSY software with its integrated AM modules enables the design and setup of a knowledge-based power plant model compatible to the requirements of international and national rules (e.g. IAEA Safety Guide NS-G-2.12, KTA 1403). In this process, a key task is to identify and monitor degradation mechanisms. For this purpose the COMSY tool provides prognosis and trending functions, which are based on more than 30 years of experience in the evaluation of degradation effects and numerous experimental studies. Since 1998 COMSY has been applied successfully in more than fifty reactor units in this field. The current version 3.0 was revised completely and offers additional AM functions. All aging-relevant component data are compiled and allocated via an integrated power plant model. Owing to existing interfaces to other software solutions and flexible import functions, COMSY is highly compatible with already existing data

  19. Tool Support for Parametric Analysis of Large Software Simulation Systems

    Science.gov (United States)

    Schumann, Johann; Gundy-Burlet, Karen; Pasareanu, Corina; Menzies, Tim; Barrett, Tony

    2008-01-01

    The analysis of large and complex parameterized software systems, e.g., systems simulation in aerospace, is very complicated and time-consuming due to the large parameter space, and the complex, highly coupled nonlinear nature of the different system components. Thus, such systems are generally validated only in regions local to anticipated operating points rather than through characterization of the entire feasible operational envelope of the system. We have addressed the factors deterring such an analysis with a tool to support envelope assessment: we utilize a combination of advanced Monte Carlo generation with n-factor combinatorial parameter variations to limit the number of cases, but still explore important interactions in the parameter space in a systematic fashion. Additional test-cases, automatically generated from models (e.g., UML, Simulink, Stateflow) improve the coverage. The distributed test runs of the software system produce vast amounts of data, making manual analysis impossible. Our tool automatically analyzes the generated data through a combination of unsupervised Bayesian clustering techniques (AutoBayes) and supervised learning of critical parameter ranges using the treatment learner TAR3. The tool has been developed around the Trick simulation environment, which is widely used within NASA. We will present this tool with a GN&C (Guidance, Navigation and Control) simulation of a small satellite system.

  20. A Survey of Open Source Tools for Business Intelligence

    DEFF Research Database (Denmark)

    Thomsen, Christian; Pedersen, Torben Bach

    The industrial use of open source Business Intelligence (BI) tools is becoming more common, but is still not as widespread as for other types of software.  It is therefore of interest to explore which possibilities are available for open source BI and compare the tools. In this survey paper, we c......The industrial use of open source Business Intelligence (BI) tools is becoming more common, but is still not as widespread as for other types of software.  It is therefore of interest to explore which possibilities...... are available for open source BI and compare the tools. In this survey paper, we consider the capabilities of a number of open source tools for BI. In the paper, we consider a number of Extract‐Transform‐Load (ETL) tools, database management systems (DBMSs), On‐Line Analytical Processing (OLAP) servers, and OLAP clients. We find that, unlike the situation a few years ago, there now...

  1. STARS software tool for analysis of reliability and safety

    International Nuclear Information System (INIS)

    Poucet, A.; Guagnini, E.

    1989-01-01

    This paper reports on the STARS (Software Tool for the Analysis of Reliability and Safety) project aims at developing an integrated set of Computer Aided Reliability Analysis tools for the various tasks involved in systems safety and reliability analysis including hazard identification, qualitative analysis, logic model construction and evaluation. The expert system technology offers the most promising perspective for developing a Computer Aided Reliability Analysis tool. Combined with graphics and analysis capabilities, it can provide a natural engineering oriented environment for computer assisted reliability and safety modelling and analysis. For hazard identification and fault tree construction, a frame/rule based expert system is used, in which the deductive (goal driven) reasoning and the heuristic, applied during manual fault tree construction, is modelled. Expert system can explain their reasoning so that the analyst can become aware of the why and the how results are being obtained. Hence, the learning aspect involved in manual reliability and safety analysis can be maintained and improved

  2. Classroom Live: a software-assisted gamification tool

    Science.gov (United States)

    de Freitas, Adrian A.; de Freitas, Michelle M.

    2013-06-01

    Teachers have come to rely on a variety of approaches in order to elicit and sustain student interest in the classroom. One particular approach, known as gamification, seeks to improve student engagement by transforming the traditional classroom experience into a competitive multiplayer game. Initial attempts at classroom gamification relied on the teacher manually tracking student progress. At the US Air Force Academy, we wanted to experiment with a software gamification tool. Our client/server suite, dubbed Classroom Live, streamlines the gamification process for the teacher by simplifying common tasks. Simultaneously, the tool provides students with an esthetically pleasing user interface that offers in game rewards in exchange for their participation. Classroom Live is still in development, but our initial experience using the tool has been extremely positive and confirms our belief that students respond positively to gamification, even at the undergraduate level.

  3. COSTMODL - AN AUTOMATED SOFTWARE DEVELOPMENT COST ESTIMATION TOOL

    Science.gov (United States)

    Roush, G. B.

    1994-01-01

    The cost of developing computer software consumes an increasing portion of many organizations' budgets. As this trend continues, the capability to estimate the effort and schedule required to develop a candidate software product becomes increasingly important. COSTMODL is an automated software development estimation tool which fulfills this need. Assimilating COSTMODL to any organization's particular environment can yield significant reduction in the risk of cost overruns and failed projects. This user-customization capability is unmatched by any other available estimation tool. COSTMODL accepts a description of a software product to be developed and computes estimates of the effort required to produce it, the calendar schedule required, and the distribution of effort and staffing as a function of the defined set of development life-cycle phases. This is accomplished by the five cost estimation algorithms incorporated into COSTMODL: the NASA-developed KISS model; the Basic, Intermediate, and Ada COCOMO models; and the Incremental Development model. This choice affords the user the ability to handle project complexities ranging from small, relatively simple projects to very large projects. Unique to COSTMODL is the ability to redefine the life-cycle phases of development and the capability to display a graphic representation of the optimum organizational structure required to develop the subject project, along with required staffing levels and skills. The program is menu-driven and mouse sensitive with an extensive context-sensitive help system that makes it possible for a new user to easily install and operate the program and to learn the fundamentals of cost estimation without having prior training or separate documentation. The implementation of these functions, along with the customization feature, into one program makes COSTMODL unique within the industry. COSTMODL was written for IBM PC compatibles, and it requires Turbo Pascal 5.0 or later and Turbo

  4. "SABER": A new software tool for radiotherapy treatment plan evaluation.

    Science.gov (United States)

    Zhao, Bo; Joiner, Michael C; Orton, Colin G; Burmeister, Jay

    2010-11-01

    Both spatial and biological information are necessary in order to perform true optimization of a treatment plan and for predicting clinical outcome. The goal of this work is to develop an enhanced treatment plan evaluation tool which incorporates biological parameters and retains spatial dose information. A software system is developed which provides biological plan evaluation with a novel combination of features. It incorporates hyper-radiosensitivity using the induced-repair model and applies the new concept of dose convolution filter (DCF) to simulate dose wash-out effects due to cell migration, bystander effect, and/or tissue motion during treatment. Further, the concept of spatial DVH (sDVH) is introduced to evaluate and potentially optimize the spatial dose distribution in the target volume. Finally, generalized equivalent uniform dose is derived from both the physical dose distribution (gEUD) and the distribution of equivalent dose in 2 Gy fractions (gEUD2) and the software provides three separate models for calculation of tumor control probability (TCP), normal tissue complication probability (NTCP), and probability of uncomplicated tumor control (P+). TCP, NTCP, and P+ are provided as a function of prescribed dose and multivariable TCP, NTCP, and P+ plots are provided to illustrate the dependence on individual parameters used to calculate these quantities. Ten plans from two clinical treatment sites are selected to test the three calculation models provided by this software. By retaining both spatial and biological information about the dose distribution, the software is able to distinguish features of radiotherapy treatment plans not discernible using commercial systems. Plans that have similar DVHs may have different spatial and biological characteristics and the application of novel tools such as sDVH and DCF within the software may substantially change the apparent plan quality or predicted plan metrics such as TCP and NTCP. For the cases examined

  5. PyPedal, an open source software package for pedigree analysis

    Science.gov (United States)

    The open source software package PyPedal (http://pypedal.sourceforge.net/) was first released in 2002, and provided users with a set of simple tools for manipulating pedigrees. Its flexibility has been demonstrated by its used in a number of settings for large and small populations. After substantia...

  6. Exploring the impact of socio-technical core-periphery structures in open source software development

    NARCIS (Netherlands)

    Amrit, Chintan Amrit; van Hillegersberg, Jos

    2010-01-01

    In this paper we apply the social network concept of core-periphery structure to the socio-technical structure of a software development team. We propose a socio-technical pattern that can be used to locate emerging coordination problems in Open Source projects. With the help of our tool and method

  7. Exploiting Software Tool Towards Easier Use And Higher Efficiency

    Science.gov (United States)

    Lin, G. H.; Su, J. T.; Deng, Y. Y.

    2006-08-01

    In developing countries, using data based on instrument made by themselves in maximum extent is very important. It is not only related to maximizing science returns upon prophase investment -- deep accumulations in every aspects but also science output. Based on the idea, we are exploiting a software (called THDP: Tool of Huairou Data Processing). It is used for processing a series of issues, which is met necessary in processing data. This paper discusses its designed purpose, functions, method and specialities. The primary vehicle for general data interpretation is through various techniques of data visualization, techniques of interactive. In the software, we employed Object Oriented approach. It is appropriate to the vehicle. it is imperative that the approach provide not only function, but do so in as convenient a fashion as possible. As result of the software exploiting, it is not only easier to learn data processing for beginner and more convenienter to need further improvement for senior but also increase greatly efficiency in every phrases include analyse, parameter adjusting, result display. Under frame of virtual observatory, for developing countries, we should study more and newer related technologies, which can advance ability and efficiency in science research, like the software we are developing

  8. Software Construction and Composition Tools for Petascale Computing SCW0837 Progress Report

    Energy Technology Data Exchange (ETDEWEB)

    Epperly, T W; Hochstein, L

    2011-09-12

    The majority of scientific software is distributed as source code. As the number of library dependencies and supported platforms increases, so does the complexity of describing the rules for configuring and building software. In this project, we have performed an empirical study of the magnitude of the build problem by examining the development history of two DOE-funded scientific software projects. We have developed MixDown, a meta-build tool, to simplify the task of building applications that depend on multiple third-party libraries. The results of this research indicate that the effort that scientific programmers spend takes a significant fraction of the total development effort and that the use of MixDown can significantly simplify the task of building software with multiple dependencies.

  9. Software tool for horizontal-axis wind turbine simulation

    Energy Technology Data Exchange (ETDEWEB)

    Vitale, A.J. [Instituto Argentino de Oceanografia, Camino La Carrindanga Km. 7, 5 CC 804, B8000FWB Bahia Blanca (Argentina); Universidad Tecnologica Nacional Facultad Regional Bahia Blanca, GESE, 11 de Abril 461, B8000LMI Bahia Blanca (Argentina); Dpto. de Ing. Electrica y de Computadoras, Universidad Nacional del Sur, Av. Alem 1253, 8000 Bahia Blanca (Argentina); Rossi, A.P. [Universidad Tecnologica Nacional Facultad Regional Bahia Blanca, GESE, 11 de Abril 461, B8000LMI Bahia Blanca (Argentina); Dpto. de Ing. Electrica y de Computadoras, Universidad Nacional del Sur, Av. Alem 1253, 8000 Bahia Blanca (Argentina)

    2008-07-15

    The main problem of a wind turbine generator design project is the design of the right blades capable of satisfying the specific energy requirement of an electric system with optimum performance. Once the blade has been designed for optimum operation at a particular rotor angular speed, it is necessary to determine the overall performance of the rotor under the range of wind speed that it will encounter. A software tool that simulates low-power, horizontal-axis wind turbines was developed for this purpose. With this program, the user can calculate the rotor power output for any combination of wind and rotor speeds, with definite blade shape and airfoil characteristics. The software also provides information about distribution of forces along the blade span, for different operational conditions. (author)

  10. Open-source software platform for medical image segmentation applications

    Science.gov (United States)

    Namías, R.; D'Amato, J. P.; del Fresno, M.

    2017-11-01

    Segmenting 2D and 3D images is a crucial and challenging problem in medical image analysis. Although several image segmentation algorithms have been proposed for different applications, no universal method currently exists. Moreover, their use is usually limited when detection of complex and multiple adjacent objects of interest is needed. In addition, the continually increasing volumes of medical imaging scans require more efficient segmentation software design and highly usable applications. In this context, we present an extension of our previous segmentation framework which allows the combination of existing explicit deformable models in an efficient and transparent way, handling simultaneously different segmentation strategies and interacting with a graphic user interface (GUI). We present the object-oriented design and the general architecture which consist of two layers: the GUI at the top layer, and the processing core filters at the bottom layer. We apply the framework for segmenting different real-case medical image scenarios on public available datasets including bladder and prostate segmentation from 2D MRI, and heart segmentation in 3D CT. Our experiments on these concrete problems show that this framework facilitates complex and multi-object segmentation goals while providing a fast prototyping open-source segmentation tool.

  11. Leveraging Existing Mission Tools in a Re-Usable, Component-Based Software Environment

    Science.gov (United States)

    Greene, Kevin; Grenander, Sven; Kurien, James; z,s (fshir. z[orttr); z,scer; O'Reilly, Taifun

    2006-01-01

    Emerging methods in component-based software development offer significant advantages but may seem incompatible with existing mission operations applications. In this paper we relate our positive experiences integrating existing mission applications into component-based tools we are delivering to three missions. In most operations environments, a number of software applications have been integrated together to form the mission operations software. In contrast, with component-based software development chunks of related functionality and data structures, referred to as components, can be individually delivered, integrated and re-used. With the advent of powerful tools for managing component-based development, complex software systems can potentially see significant benefits in ease of integration, testability and reusability from these techniques. These benefits motivate us to ask how component-based development techniques can be relevant in a mission operations environment, where there is significant investment in software tools that are not component-based and may not be written in languages for which component-based tools even exist. Trusted and complex software tools for sequencing, validation, navigation, and other vital functions cannot simply be re-written or abandoned in order to gain the advantages offered by emerging component-based software techniques. Thus some middle ground must be found. We have faced exactly this issue, and have found several solutions. Ensemble is an open platform for development, integration, and deployment of mission operations software that we are developing. Ensemble itself is an extension of an open source, component-based software development platform called Eclipse. Due to the advantages of component-based development, we have been able to vary rapidly develop mission operations tools for three surface missions by mixing and matching from a common set of mission operation components. We have also had to determine how to

  12. A software tool for analyzing multichannel cochlear implant signals.

    Science.gov (United States)

    Lai, Wai Kong; Bögli, Hans; Dillier, Norbert

    2003-10-01

    A useful and convenient means to analyze the radio frequency (RF) signals being sent by a speech processor to a cochlear implant would be to actually capture and display them with appropriate software. This is particularly useful for development or diagnostic purposes. sCILab (Swiss Cochlear Implant Laboratory) is such a PC-based software tool intended for the Nucleus family of Multichannel Cochlear Implants. Its graphical user interface provides a convenient and intuitive means for visualizing and analyzing the signals encoding speech information. Both numerical and graphic displays are available for detailed examination of the captured CI signals, as well as an acoustic simulation of these CI signals. sCILab has been used in the design and verification of new speech coding strategies, and has also been applied as an analytical tool in studies of how different parameter settings of existing speech coding strategies affect speech perception. As a diagnostic tool, it is also useful for troubleshooting problems with the external equipment of the cochlear implant systems.

  13. Northwestern University Schizophrenia Data and Software Tool (NUSDAST

    Directory of Open Access Journals (Sweden)

    Lei eWang

    2013-11-01

    Full Text Available The schizophrenia research community has invested substantial resources on collecting, managing and sharing large neuroimaging datasets. As part of this effort, our group has collected high resolution magnetic resonance (MR datasets from individuals with schizophrenia, their non-psychotic siblings, healthy controls and their siblings. This effort has resulted in a growing resource, the Northwestern University Schizophrenia Data and Software Tool (NUSDAST, an NIH-funded data sharing project to stimulate new research. This resource resides on XNAT Central, and it contains neuroimaging (MR scans, landmarks and surface maps for deep subcortical structures, and FreeSurfer cortical parcellation and measurement data, cognitive (cognitive domain scores for crystallized intelligence, working memory, episodic memory, and executive function, clinical (demographic, sibling relationship, SAPS and SANS psychopathology, and genetic (20 polymorphisms data, collected from more than 450 subjects, most with 2-year longitudinal follow-up. A neuroimaging mapping, analysis and visualization software tool, CAWorks, is also part of this resource. Moreover, in making our existing neuroimaging data along with the associated meta-data and computational tools publically accessible, we have established a web-based information retrieval portal that allows the user to efficiently search the collection. This research-ready dataset meaningfully combines neuroimaging data with other relevant information, and it can be used to help facilitate advancing neuroimaging research. It is our hope that this effort will help to overcome some of the commonly recognized technical barriers in advancing neuroimaging research such as lack of local organization and standard descriptions.

  14. GIS-Based Noise Simulation Open Source Software: N-GNOIS

    Science.gov (United States)

    Vijay, Ritesh; Sharma, A.; Kumar, M.; Shende, V.; Chakrabarti, T.; Gupta, Rajesh

    2015-12-01

    Geographical information system (GIS)-based noise simulation software (N-GNOIS) has been developed to simulate the noise scenario due to point and mobile sources considering the impact of geographical features and meteorological parameters. These have been addressed in the software through attenuation modules of atmosphere, vegetation and barrier. N-GNOIS is a user friendly, platform-independent and open geospatial consortia (OGC) compliant software. It has been developed using open source technology (QGIS) and open source language (Python). N-GNOIS has unique features like cumulative impact of point and mobile sources, building structure and honking due to traffic. Honking is the most common phenomenon in developing countries and is frequently observed on any type of roads. N-GNOIS also helps in designing physical barrier and vegetation cover to check the propagation of noise and acts as a decision making tool for planning and management of noise component in environmental impact assessment (EIA) studies.

  15. Open Source Next Generation Visualization Software for Interplanetary Missions

    Science.gov (United States)

    Trimble, Jay; Rinker, George

    2016-01-01

    Mission control is evolving quickly, driven by the requirements of new missions, and enabled by modern computing capabilities. Distributed operations, access to data anywhere, data visualization for spacecraft analysis that spans multiple data sources, flexible reconfiguration to support multiple missions, and operator use cases, are driving the need for new capabilities. NASA's Advanced Multi-Mission Operations System (AMMOS), Ames Research Center (ARC) and the Jet Propulsion Laboratory (JPL) are collaborating to build a new generation of mission operations software for visualization, to enable mission control anywhere, on the desktop, tablet and phone. The software is built on an open source platform that is open for contributions (http://nasa.github.io/openmct).

  16. Close connections between open science and open-source software

    Directory of Open Access Journals (Sweden)

    YouHua Chen

    2014-09-01

    Full Text Available Open science is increasingly gaining attention in recent years. In this mini-review, we briefly discuss and summarize the reasons of introducing open science into academic publications for scientists. We argue that open-source software (like R and Python software can be the universal and important platforms for doing open science because of their appealing features: open source, easy-reading document, commonly used in various scientific disciplines like statistics, chemistry and biology. At last, the challenges and future perspectives of performing open science are discussed.

  17. The Challenges of Open Source Software in IT Adoption

    DEFF Research Database (Denmark)

    Holm Larsen, Michael; Holck, Jesper; Pedersen, Mogens Kuhn

    2004-01-01

    Abstract: The paper presents an explorative study of Open Source Software (OSS) focusing on the managerial decisions for acquisition of OSS. Based on three case studies we argue that whereas small organizations often may chose adoption of OSS expecting significant cost savings, a major barrier...... for larger organizations' adoption of OSS lies in the organizations' consolidation of the enterprise architectures, in addition to that OSS will not be adopted before satisfactory delivery and procurement models for OSS are established. Keywords: Open Source Software, OSS, Enterprise Architecture, Total Cost...

  18. QUALITY SERVICES EVALUATION MODEL BASED ON DEDICATED SOFTWARE TOOL

    Directory of Open Access Journals (Sweden)

    ANDREEA CRISTINA IONICĂ

    2012-10-01

    Full Text Available In this paper we introduced a new model, called Service Quality (SQ, which combines QFD and SERVQUAL methods. This model takes from the SERVQUAL method the five dimensions of requirements and three of characteristics and from the QFD method the application methodology. The originality of the SQ model consists in computing a global index that reflects the customers’ requirements accomplishment level by the quality characteristics. In order to prove the viability of the SQ model, there was developed a software tool that was applied for the evaluation of a health care services provider.

  19. Advanced software tools for digital loose part monitoring systems

    International Nuclear Information System (INIS)

    Ding, Y.

    1996-01-01

    The paper describes two software modules as analysis tools for digital loose part monitoring systems. The first module is called acoustic module which utilizes the multi-media features of modern personal computers to replay the digital stored short-time bursts with sufficient length and in good quality. This is possible due to the so-called puzzle technique developed at ISTec. The second module is called classification module which calculates advanced burst parameters and classifies the acoustic events in pre-defined classes with the help of an artificial multi-layer perception neural network trained with the back propagation algorithm. (author). 7 refs, 7 figs

  20. Object-Oriented Software Tools for the Construction of Preconditioners

    Directory of Open Access Journals (Sweden)

    Eva Mossberg

    1997-01-01

    Full Text Available In recent years, there has been considerable progress concerning preconditioned iterative methods for large and sparse systems of equations arising from the discretization of differential equations. Such methods are particularly attractive in the context of high-performance (parallel computers. However, the implementation of a preconditioner is a nontrivial task. The focus of the present contribution is on a set of object-oriented software tools that support the construction of a family of preconditioners based on fast transforms. By combining objects of different classes, it is possible to conveniently construct any preconditioner within this family.

  1. Advanced software tools for digital loose part monitoring systems

    Energy Technology Data Exchange (ETDEWEB)

    Ding, Y [Institute for Safety Technology (ISTec) GmbH, Garching (Germany)

    1997-12-31

    The paper describes two software modules as analysis tools for digital loose part monitoring systems. The first module is called acoustic module which utilizes the multi-media features of modern personal computers to replay the digital stored short-time bursts with sufficient length and in good quality. This is possible due to the so-called puzzle technique developed at ISTec. The second module is called classification module which calculates advanced burst parameters and classifies the acoustic events in pre-defined classes with the help of an artificial multi-layer perception neural network trained with the back propagation algorithm. (author). 7 refs, 7 figs.

  2. Free and Open Source Software for Geospatial in the field of planetary science

    Science.gov (United States)

    Frigeri, A.

    2012-12-01

    Information technology applied to geospatial analyses has spread quickly in the last ten years. The availability of OpenData and data from collaborative mapping projects increased the interest on tools, procedures and methods to handle spatially-related information. Free Open Source Software projects devoted to geospatial data handling are gaining a good success as the use of interoperable formats and protocols allow the user to choose what pipeline of tools and libraries is needed to solve a particular task, adapting the software scene to his specific problem. In particular, the Free Open Source model of development mimics the scientific method very well, and researchers should be naturally encouraged to take part to the development process of these software projects, as this represent a very agile way to interact among several institutions. When it comes to planetary sciences, geospatial Free Open Source Software is gaining a key role in projects that commonly involve different subjects in an international scenario. Very popular software suites for processing scientific mission data (for example, ISIS) and for navigation/planning (SPICE) are being distributed along with the source code and the interaction between user and developer is often very strict, creating a continuum between these two figures. A very widely spread library for handling geospatial data (GDAL) has started to support planetary data from the Planetary Data System, and recent contributions enabled the support to other popular data formats used in planetary science, as the Vicar one. The use of Geographic Information System in planetary science is now diffused, and Free Open Source GIS, open GIS formats and network protocols allow to extend existing tools and methods developed to solve Earth based problems, also to the case of the study of solar system bodies. A day in the working life of a researcher using Free Open Source Software for geospatial will be presented, as well as benefits and

  3. What makes computational open source software libraries successful?

    Science.gov (United States)

    Bangerth, Wolfgang; Heister, Timo

    2013-01-01

    Software is the backbone of scientific computing. Yet, while we regularly publish detailed accounts about the results of scientific software, and while there is a general sense of which numerical methods work well, our community is largely unaware of best practices in writing the large-scale, open source scientific software upon which our discipline rests. This is particularly apparent in the commonly held view that writing successful software packages is largely the result of simply ‘being a good programmer’ when in fact there are many other factors involved, for example the social skill of community building. In this paper, we consider what we have found to be the necessary ingredients for successful scientific software projects and, in particular, for software libraries upon which the vast majority of scientific codes are built today. In particular, we discuss the roles of code, documentation, communities, project management and licenses. We also briefly comment on the impact on academic careers of engaging in software projects.

  4. What makes computational open source software libraries successful?

    International Nuclear Information System (INIS)

    Bangerth, Wolfgang; Heister, Timo

    2013-01-01

    Software is the backbone of scientific computing. Yet, while we regularly publish detailed accounts about the results of scientific software, and while there is a general sense of which numerical methods work well, our community is largely unaware of best practices in writing the large-scale, open source scientific software upon which our discipline rests. This is particularly apparent in the commonly held view that writing successful software packages is largely the result of simply ‘being a good programmer’ when in fact there are many other factors involved, for example the social skill of community building. In this paper, we consider what we have found to be the necessary ingredients for successful scientific software projects and, in particular, for software libraries upon which the vast majority of scientific codes are built today. In particular, we discuss the roles of code, documentation, communities, project management and licenses. We also briefly comment on the impact on academic careers of engaging in software projects. (paper)

  5. Open-Source Software in Computational Research: A Case Study

    Directory of Open Access Journals (Sweden)

    Sreekanth Pannala

    2008-04-01

    Full Text Available A case study of open-source (OS development of the computational research software MFIX, used for multiphase computational fluid dynamics simulations, is presented here. The verification and validation steps required for constructing modern computational software and the advantages of OS development in those steps are discussed. The infrastructure used for enabling the OS development of MFIX is described. The impact of OS development on computational research and education in gas-solids flow, as well as the dissemination of information to other areas such as geophysical and volcanology research, is demonstrated. This study shows that the advantages of OS development were realized in the case of MFIX: verification by many users, which enhances software quality; the use of software as a means for accumulating and exchanging information; the facilitation of peer review of the results of computational research.

  6. System level modelling with open source tools

    DEFF Research Database (Denmark)

    Jakobsen, Mikkel Koefoed; Madsen, Jan; Niaki, Seyed Hosein Attarzadeh

    , called ForSyDe. ForSyDe is available under the open Source approach, which allows small and medium enterprises (SME) to get easy access to advanced modeling capabilities and tools. We give an introduction to the design methodology through the system level modeling of a simple industrial use case, and we...

  7. Harnessing scientific literature reports for pharmacovigilance. Prototype software analytical tool development and usability testing.

    Science.gov (United States)

    Sorbello, Alfred; Ripple, Anna; Tonning, Joseph; Munoz, Monica; Hasan, Rashedul; Ly, Thomas; Francis, Henry; Bodenreider, Olivier

    2017-03-22

    We seek to develop a prototype software analytical tool to augment FDA regulatory reviewers' capacity to harness scientific literature reports in PubMed/MEDLINE for pharmacovigilance and adverse drug event (ADE) safety signal detection. We also aim to gather feedback through usability testing to assess design, performance, and user satisfaction with the tool. A prototype, open source, web-based, software analytical tool generated statistical disproportionality data mining signal scores and dynamic visual analytics for ADE safety signal detection and management. We leveraged Medical Subject Heading (MeSH) indexing terms assigned to published citations in PubMed/MEDLINE to generate candidate drug-adverse event pairs for quantitative data mining. Six FDA regulatory reviewers participated in usability testing by employing the tool as part of their ongoing real-life pharmacovigilance activities to provide subjective feedback on its practical impact, added value, and fitness for use. All usability test participants cited the tool's ease of learning, ease of use, and generation of quantitative ADE safety signals, some of which corresponded to known established adverse drug reactions. Potential concerns included the comparability of the tool's automated literature search relative to a manual 'all fields' PubMed search, missing drugs and adverse event terms, interpretation of signal scores, and integration with existing computer-based analytical tools. Usability testing demonstrated that this novel tool can automate the detection of ADE safety signals from published literature reports. Various mitigation strategies are described to foster improvements in design, productivity, and end user satisfaction.

  8. Dilemmas within Commercial Involvement in Open Source Software

    DEFF Research Database (Denmark)

    Ciesielska, Malgorzata; Westenholz, Ann

    2016-01-01

    to free-riding. There are six levels of commercial involvement in open source communities, and each of them is characterized by a different dilemma. Originality/value – The paper sheds light on the various level of involvement of business in open source movement and emphasize that the popularized “open......Purpose – The purpose of this paper is to contribute to the literature about the commercial involvement in open source software, levels of this involvement and consequences of attempting to mix various logics of action. Design/methodology/approach – This paper uses the case study approach based...... on mixed methods: literature reviews and news searches, electronic surveys, qualitative interviews and observations. It combines discussions from several research projects as well as previous publications to present the scope of commercial choices within open source software and their consequences...

  9. Software tools to aid Pascal and Ada program design

    Energy Technology Data Exchange (ETDEWEB)

    Jankowitz, H.T.

    1987-01-01

    This thesis describes a software tool which analyses the style and structure of Pascal and Ada programs by ensuring that some minimum design requirements are fulfilled. The tool is used in much the same way as a compiler is used to teach students the syntax of a language, only in this case issues related to the design and structure of the program are of paramount importance. The tool operates by analyzing the design and structure of a syntactically correct program, automatically generating a report detailing changes that need to be made in order to ensure that the program is structurally sound. The author discusses how the model gradually evolved from a plagiarism detection system which extracted several measurable characteristics in a program to a model that analyzed the style of Pascal programs. In order to incorporate more-sophistical concepts like data abstraction, information hiding and data protection, this model was then extended to analyze the composition of Ada programs. The Ada model takes full advantage of facilities offered in the language and by using this tool the standard and quality of written programs is raised whilst the fundamental principles of program design are grasped through a process of self-tuition.

  10. Digital Preservation in Open-Source Digital Library Software

    Science.gov (United States)

    Madalli, Devika P.; Barve, Sunita; Amin, Saiful

    2012-01-01

    Digital archives and digital library projects are being initiated all over the world for materials of different formats and domains. To organize, store, and retrieve digital content, many libraries as well as archiving centers are using either proprietary or open-source software. While it is accepted that print media can survive for centuries with…

  11. Curious exceptions? : open source software and "open" technology

    NARCIS (Netherlands)

    Nuvolari, A.; Rullani, F.; St. Amant, Kirk; Still, Brian

    2007-01-01

    The aim of thts chapter is to explore the differences and commonalities between open source software and other cases of open technology. The concept of open technology is used here to indicate various models of innovation based on the participation of a wide range of different actors who freely

  12. The Babel of software development : linguistic diversity in open source

    NARCIS (Netherlands)

    Vasilescu, B.N.; Serebrenik, A.; Brand, van den M.G.J.; Jatowt, A.; Lim, E.-P.; Ding, Y.

    2013-01-01

    Open source software (OSS) development communities are typically very specialised, on the one hand, and experience high turnover, on the other. Combination of specialization and turnover can cause parts of the system implemented in a certain programming language to become unmaintainable, if

  13. Intrinsic Motivation versus Signaling in Open Source Software Development

    DEFF Research Database (Denmark)

    Bitzer, J; Schrettl, W; Schröder, P

    This papers sheds light on the puzzling fact that even though open source software (OSS) is a public good, it is developed for free by highly qualified, young, motivated individuals, and evolves at a rapid pace. We show that when OSS development is understood as the private provision of a public...

  14. The Economics of Open Source Software Development: An Introduction

    DEFF Research Database (Denmark)

    Schröder, Philipp J.H.; Bitzer, Jürgen

    2006-01-01

    This chapter introduces the fundamentals of Open Source Software, its nature, the central economic aspects and the key mechanisms of its development. Furthermore, we present the themes of the book and provide a first overview for the reader by giving short summaries of its chapters....

  15. Open Source Projects in Software Engineering Education: A Mapping Study

    Science.gov (United States)

    Nascimento, Debora M. C.; Almeida Bittencourt, Roberto; Chavez, Christina

    2015-01-01

    Context: It is common practice in academia to have students work with "toy" projects in software engineering (SE) courses. One way to make such courses more realistic and reduce the gap between academic courses and industry needs is getting students involved in open source projects (OSP) with faculty supervision. Objective: This study…

  16. Exploring Coordination Structures in Open Source Software Development

    NARCIS (Netherlands)

    van Hillegersberg, Jos; Harmsen, Frank; Hegeman, J.H.; Amrit, Chintan Amrit; Geisberger, Eva; Keil, Patrick; Kuhrmann, Marco

    2007-01-01

    Coordination is difficult to achieve in a large globally distributed project setting. The problem is multiplied in open source software development projects, where most of the traditional means of coordination such as plans, system-level designs, schedules and defined process are not used. In order

  17. Installing and Setting Up Git Software Tool on Windows | High-Performance

    Science.gov (United States)

    Computing | NREL Git Software Tool on Windows Installing and Setting Up Git Software Tool on Windows Learn how to set up the Git software tool on Windows for use with the Peregrine system. Git is this doc, we'll show you how to get git installed on Windows 7, and how to get things set up on NREL's

  18. Simulation of neutron multiplicity measurements using Geant4. Open source software for nuclear arms control

    Energy Technology Data Exchange (ETDEWEB)

    Kuett, Moritz

    2016-07-07

    Nuclear arms control, including nuclear safeguards and verification technologies for nuclear disarmament typically use software as part of many different technological applications. This thesis proposes to use three open source criteria for such software, allowing users and developers to have free access to a program, have access to the full source code and be able to publish modifications for the program. This proposition is presented and analyzed in detail, together with the description of the development of ''Open Neutron Multiplicity Simulation'', an open source software tool to simulate neutron multiplicity measurements. The description includes physical background of the method, details of the developed program and a comprehensive set of validation calculations.

  19. Learning Photogrammetry with Interactive Software Tool PhoX

    Directory of Open Access Journals (Sweden)

    T. Luhmann

    2016-06-01

    Full Text Available Photogrammetry is a complex topic in high-level university teaching, especially in the fields of geodesy, geoinformatics and metrology where high quality results are demanded. In addition, more and more black-box solutions for 3D image processing and point cloud generation are available that generate nice results easily, e.g. by structure-from-motion approaches. Within this context, the classical approach of teaching photogrammetry (e.g. focusing on aerial stereophotogrammetry has to be reformed in order to educate students and professionals with new topics and provide them with more information behind the scene. Since around 20 years photogrammetry courses at the Jade University of Applied Sciences in Oldenburg, Germany, include the use of digital photogrammetry software that provide individual exercises, deep analysis of calculation results and a wide range of visualization tools for almost all standard tasks in photogrammetry. During the last years the software package PhoX has been developed that is part of a new didactic concept in photogrammetry and related subjects. It also serves as analysis tool in recent research projects. PhoX consists of a project-oriented data structure for images, image data, measured points and features and 3D objects. It allows for almost all basic photogrammetric measurement tools, image processing, calculation methods, graphical analysis functions, simulations and much more. Students use the program in order to conduct predefined exercises where they have the opportunity to analyse results in a high level of detail. This includes the analysis of statistical quality parameters but also the meaning of transformation parameters, rotation matrices, calibration and orientation data. As one specific advantage, PhoX allows for the interactive modification of single parameters and the direct view of the resulting effect in image or object space.

  20. Learning Photogrammetry with Interactive Software Tool PhoX

    Science.gov (United States)

    Luhmann, T.

    2016-06-01

    Photogrammetry is a complex topic in high-level university teaching, especially in the fields of geodesy, geoinformatics and metrology where high quality results are demanded. In addition, more and more black-box solutions for 3D image processing and point cloud generation are available that generate nice results easily, e.g. by structure-from-motion approaches. Within this context, the classical approach of teaching photogrammetry (e.g. focusing on aerial stereophotogrammetry) has to be reformed in order to educate students and professionals with new topics and provide them with more information behind the scene. Since around 20 years photogrammetry courses at the Jade University of Applied Sciences in Oldenburg, Germany, include the use of digital photogrammetry software that provide individual exercises, deep analysis of calculation results and a wide range of visualization tools for almost all standard tasks in photogrammetry. During the last years the software package PhoX has been developed that is part of a new didactic concept in photogrammetry and related subjects. It also serves as analysis tool in recent research projects. PhoX consists of a project-oriented data structure for images, image data, measured points and features and 3D objects. It allows for almost all basic photogrammetric measurement tools, image processing, calculation methods, graphical analysis functions, simulations and much more. Students use the program in order to conduct predefined exercises where they have the opportunity to analyse results in a high level of detail. This includes the analysis of statistical quality parameters but also the meaning of transformation parameters, rotation matrices, calibration and orientation data. As one specific advantage, PhoX allows for the interactive modification of single parameters and the direct view of the resulting effect in image or object space.

  1. The SCEC/UseIT Intern Program: Creating Open-Source Visualization Software Using Diverse Resources

    Science.gov (United States)

    Francoeur, H.; Callaghan, S.; Perry, S.; Jordan, T.

    2004-12-01

    The Southern California Earthquake Center undergraduate IT intern program (SCEC UseIT) conducts IT research to benefit collaborative earth science research. Through this program, interns have developed real-time, interactive, 3D visualization software using open-source tools. Dubbed LA3D, a distribution of this software is now in use by the seismic community. LA3D enables the user to interactively view Southern California datasets and models of importance to earthquake scientists, such as faults, earthquakes, fault blocks, digital elevation models, and seismic hazard maps. LA3D is now being extended to support visualizations anywhere on the planet. The new software, called SCEC-VIDEO (Virtual Interactive Display of Earth Objects), makes use of a modular, plugin-based software architecture which supports easy development and integration of new data sets. Currently SCEC-VIDEO is in beta testing, with a full open-source release slated for the future. Both LA3D and SCEC-VIDEO were developed using a wide variety of software technologies. These, which included relational databases, web services, software management technologies, and 3-D graphics in Java, were necessary to integrate the heterogeneous array of data sources which comprise our software. Currently the interns are working to integrate new technologies and larger data sets to increase software functionality and value. In addition, both LA3D and SCEC-VIDEO allow the user to script and create movies. Thus program interns with computer science backgrounds have been writing software while interns with other interests, such as cinema, geology, and education, have been making movies that have proved of great use in scientific talks, media interviews, and education. Thus, SCEC UseIT incorporates a wide variety of scientific and human resources to create products of value to the scientific and outreach communities. The program plans to continue with its interdisciplinary approach, increasing the relevance of the

  2. An architectural model for software reliability quantification: sources of data

    International Nuclear Information System (INIS)

    Smidts, C.; Sova, D.

    1999-01-01

    Software reliability assessment models in use today treat software as a monolithic block. An aversion towards 'atomic' models seems to exist. These models appear to add complexity to the modeling, to the data collection and seem intrinsically difficult to generalize. In 1997, we introduced an architecturally based software reliability model called FASRE. The model is based on an architecture derived from the requirements which captures both functional and nonfunctional requirements and on a generic classification of functions, attributes and failure modes. The model focuses on evaluation of failure mode probabilities and uses a Bayesian quantification framework. Failure mode probabilities of functions and attributes are propagated to the system level using fault trees. It can incorporate any type of prior information such as results of developers' testing, historical information on a specific functionality and its attributes, and, is ideally suited for reusable software. By building an architecture and deriving its potential failure modes, the model forces early appraisal and understanding of the weaknesses of the software, allows reliability analysis of the structure of the system, provides assessments at a functional level as well as at a systems' level. In order to quantify the probability of failure (or the probability of success) of a specific element of our architecture, data are needed. The term element of the architecture is used here in its broadest sense to mean a single failure mode or a higher level of abstraction such as a function. The paper surveys the potential sources of software reliability data available during software development. Next the mechanisms for incorporating these sources of relevant data to the FASRE model are identified

  3. Plasma sources for EUV lithography exposure tools

    International Nuclear Information System (INIS)

    Banine, Vadim; Moors, Roel

    2004-01-01

    The source is an integral part of an extreme ultraviolet lithography (EUVL) tool. Such a source, as well as the EUVL tool, has to fulfil extremely high demands both technical and cost oriented. The EUVL tool operates at a wavelength in the range 13-14 nm, which requires a major re-thinking of state-of-the-art lithography systems operating in the DUV range. The light production mechanism changes from conventional lamps and lasers to relatively high temperature emitting plasmas. The light transport, mainly refractive for DUV, should become reflective for EUV. The source specifications are derived from the customer requirements for the complete tool, which are: throughput, cost of ownership (CoO) and imaging quality. The EUVL system is considered as a follow up of the existing DUV based lithography technology and, while improving the feature resolution, it has to maintain high wafer throughput performance, which is driven by the overall CoO picture. This in turn puts quite high requirements on the collectable in-band power produced by an EUV source. Increased, due to improved feature resolution, critical dimension (CD) control requirements, together with reflective optics restrictions, necessitate pulse-to-pulse repeatability, spatial stability control and repetition rates, which are substantially better than those of current optical systems. All together the following aspects of the source specification will be addressed: the operating wavelength, the EUV power, the hot spot size, the collectable angle, the repetition rate, the pulse-to-pulse repeatability and the debris induced lifetime of components

  4. Teaching structure: student use of software tools for understanding macromolecular structure in an undergraduate biochemistry course.

    Science.gov (United States)

    Jaswal, Sheila S; O'Hara, Patricia B; Williamson, Patrick L; Springer, Amy L

    2013-01-01

    Because understanding the structure of biological macromolecules is critical to understanding their function, students of biochemistry should become familiar not only with viewing, but also with generating and manipulating structural representations. We report a strategy from a one-semester undergraduate biochemistry course to integrate use of structural representation tools into both laboratory and homework activities. First, early in the course we introduce the use of readily available open-source software for visualizing protein structure, coincident with modules on amino acid and peptide bond properties. Second, we use these same software tools in lectures and incorporate images and other structure representations in homework tasks. Third, we require a capstone project in which teams of students examine a protein-nucleic acid complex and then use the software tools to illustrate for their classmates the salient features of the structure, relating how the structure helps explain biological function. To ensure engagement with a range of software and database features, we generated a detailed template file that can be used to explore any structure, and that guides students through specific applications of many of the software tools. In presentations, students demonstrate that they are successfully interpreting structural information, and using representations to illustrate particular points relevant to function. Thus, over the semester students integrate information about structural features of biological macromolecules into the larger discussion of the chemical basis of function. Together these assignments provide an accessible introduction to structural representation tools, allowing students to add these methods to their biochemical toolboxes early in their scientific development. © 2013 by The International Union of Biochemistry and Molecular Biology.

  5. An Organizational Perspective on Free and Open Source Software Development

    DEFF Research Database (Denmark)

    Vujovic, Sladjana; Ulhøi, John Parm

    2006-01-01

    The traditional model of innovation, the restricted/close source (R/CS) model, is based on proprietary knowledge and private model of production. A fundamental different one, the open source model is based on non-proprietary knowledge and non-economic motives. Moreover, between the two......, there are various combinations or hybrids, in the following referred to as free/open source-based (F/OS-based) agency. In the discussions, practical examples from software production are included. In conclusion, the paper identifies avenues for future research as well as important managerial and policy implications....

  6. Software reference for SaTool - a Tool for Structural Analysis of Automated Systems

    DEFF Research Database (Denmark)

    Lorentzen, Torsten; Blanke, Mogens

    2004-01-01

    This software reference details the functions of SaTool – a tool for structural analysis of technical systems. SaTool is intended used as part of an industrial systems design cycle. Structural analysis is a graph-based technique where principal relations between variables express the system’s...... of the graph. SaTool makes analysis of the structure graph to provide knowledge about fundamental properties of the system in normal and faulty conditions. Salient features of SaTool include rapid analysis of possibility to diagnose faults and ability to make autonomous recovery should faults occur........ The list of such variables and functional relations constitute the system’s structure graph. Normal operation means all functional relations are intact. Should faults occur, one or more functional relations cease to be valid. In a structure graph, this is seen as the disappearance of one or more nodes...

  7. Economic Consequence Analysis of Disasters: The ECAT Software Tool

    Energy Technology Data Exchange (ETDEWEB)

    Rose, Adam; Prager, Fynn; Chen, Zhenhua; Chatterjee, Samrat; Wei, Dan; Heatwole, Nathaniel; Warren, Eric

    2017-04-15

    This study develops a methodology for rapidly obtaining approximate estimates of the economic consequences from numerous natural, man-made and technological threats. This software tool is intended for use by various decision makers and analysts to obtain estimates rapidly. It is programmed in Excel and Visual Basic for Applications (VBA) to facilitate its use. This tool is called E-CAT (Economic Consequence Analysis Tool) and accounts for the cumulative direct and indirect impacts (including resilience and behavioral factors that significantly affect base estimates) on the U.S. economy. E-CAT is intended to be a major step toward advancing the current state of economic consequence analysis (ECA) and also contributing to and developing interest in further research into complex but rapid turnaround approaches. The essence of the methodology involves running numerous simulations in a computable general equilibrium (CGE) model for each threat, yielding synthetic data for the estimation of a single regression equation based on the identification of key explanatory variables (threat characteristics and background conditions). This transforms the results of a complex model, which is beyond the reach of most users, into a "reduced form" model that is readily comprehensible. Functionality has been built into E-CAT so that its users can switch various consequence categories on and off in order to create customized profiles of economic consequences of numerous risk events. E-CAT incorporates uncertainty on both the input and output side in the course of the analysis.

  8. Hardware replacements and software tools for digital control computers

    International Nuclear Information System (INIS)

    Walker, R.A.P.; Wang, B-C.; Fung, J.

    1996-01-01

    computers which use 'Varian' technology. A new software program, Desk Top Tools, permits the designer greater flexibility in digital control computer software design and testing. This software development allows the user to emulate control of the CANDU reactor system by system. All discussions will highlight the ability of the replacements and the new developments to enhance the operation of the existing and 'repeat' plant digital control computers and will explore future applications of these developments. Examples of current use of all replacement components and software are provided. (author)

  9. Open-source tools for data mining.

    Science.gov (United States)

    Zupan, Blaz; Demsar, Janez

    2008-03-01

    With a growing volume of biomedical databases and repositories, the need to develop a set of tools to address their analysis and support knowledge discovery is becoming acute. The data mining community has developed a substantial set of techniques for computational treatment of these data. In this article, we discuss the evolution of open-source toolboxes that data mining researchers and enthusiasts have developed over the span of a few decades and review several currently available open-source data mining suites. The approaches we review are diverse in data mining methods and user interfaces and also demonstrate that the field and its tools are ready to be fully exploited in biomedical research.

  10. The D2G2 project: a new software tool for nuclear engineering design in Canada

    International Nuclear Information System (INIS)

    Rheaume, P.; Lefebvre, J.F.; Roy, R.; Koclas, J.

    2004-01-01

    Nowadays, high quality neutronic simulation codes are readily available. The open source software suite DRAGON/DONJON is a good example. It is free, it has proven quality and correctness over the years and is still developed and maintained at Ecole Polytechnique de Montreal. However, most simulation codes have the following weaknesses: limited usability, poor maintainability, no internal data standardization and poor portability. The D2G2 project is a software development initiative which aims to create an upper layer software tool that annihilates the weakness of classic simulation codes. This paper presents D2G2Client's and D2G2Server's principal capabilities, how they interact and the libraries they use. (author)

  11. Compensation of Digital Competence Deficiency with Software Ergonomic Tools

    Directory of Open Access Journals (Sweden)

    Zoltán Nyikes

    2018-03-01

    Full Text Available In the contemporary digital world, a lot of information needs to be processed every day. Our security depends on the quick and accurate processing of this information. Figure-based information processing is faster and simpler than the text-based one. The level of IT skills and skills may be lower in this way, so a system that is applicable to a broader social circle is needed. The solution would be to make the use of info-communication tools accessible to people with low vision, those with learning difficulties, non-speakers, the elderly and children who are unable to read because of their age. In this article, the author attempts to illustrate the difference in the processing of visual and textual information through a simple survey and make recommendations for the ergonomic compensation of digital competence gaps with software.

  12. Open source tools and toolkits for bioinformatics: significance, and where are we?

    Science.gov (United States)

    Stajich, Jason E; Lapp, Hilmar

    2006-09-01

    This review summarizes important work in open-source bioinformatics software that has occurred over the past couple of years. The survey is intended to illustrate how programs and toolkits whose source code has been developed or released under an Open Source license have changed informatics-heavy areas of life science research. Rather than creating a comprehensive list of all tools developed over the last 2-3 years, we use a few selected projects encompassing toolkit libraries, analysis tools, data analysis environments and interoperability standards to show how freely available and modifiable open-source software can serve as the foundation for building important applications, analysis workflows and resources.

  13. Development of Safety-Critical Software for Nuclear Power Plant using a CASE Tool

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Chang Ho; Oh, Do Young; Kim, Koh Eun; Choi, Woong Seock; Sohn, Se Do; Kim, Jae Hack; Kim, Hang Bae [KEPCO E and C, Daejeon (Korea, Republic of)

    2011-08-15

    The Integrated SOftware Development Environment (ISODE) is developed to provide the major S/W life cycle processes that are composed of development process, V/V process, requirements traceability process, and automated document generation process and target importing process to Programmable Logic Controller (PLC) platform. This provides critical safety software developers with a certified, domain optimized, model-based development environment, and the associated services to reduce time and efforts to develop software such as debugging, simulation, code generation and document generation. This also provides critical safety software verifiers with integrated V/V features of each phase of the software life cycle using appropriate tools such as model test coverage, formal verification, and automated report generation. In addition to development and verification, the ISODE gives a complete traceability solution from the SW design phase to the testing phase. Using this information, the coverage and impact analysis can be done easily whenever software modification is necessary. The final source codes of ISODE are imported into the newly developed PLC environment, as a module based after automatically converted into the format required by PLC. Additional tests for module and unit level are performed on the target platform.

  14. Development of Safety-Critical Software for Nuclear Power Plant using a CASE Tool

    International Nuclear Information System (INIS)

    Kim, Chang Ho; Oh, Do Young; Kim, Koh Eun; Choi, Woong Seock; Sohn, Se Do; Kim, Jae Hack; Kim, Hang Bae

    2011-01-01

    The Integrated SOftware Development Environment (ISODE) is developed to provide the major S/W life cycle processes that are composed of development process, V/V process, requirements traceability process, and automated document generation process and target importing process to Programmable Logic Controller (PLC) platform. This provides critical safety software developers with a certified, domain optimized, model-based development environment, and the associated services to reduce time and efforts to develop software such as debugging, simulation, code generation and document generation. This also provides critical safety software verifiers with integrated V/V features of each phase of the software life cycle using appropriate tools such as model test coverage, formal verification, and automated report generation. In addition to development and verification, the ISODE gives a complete traceability solution from the SW design phase to the testing phase. Using this information, the coverage and impact analysis can be done easily whenever software modification is necessary. The final source codes of ISODE are imported into the newly developed PLC environment, as a module based after automatically converted into the format required by PLC. Additional tests for module and unit level are performed on the target platform

  15. The software improvement process - tools and rules to encourage quality

    International Nuclear Information System (INIS)

    Sigerud, K.; Baggiolini, V.

    2012-01-01

    The Applications section of the CERN accelerator controls group has decided to apply a systematic approach to quality assurance (QA), the 'Software Improvement Process' - SIP. This process focuses on three areas: the development process itself, suitable QA tools, and how to practically encourage developers to do QA. For each stage of the development process we have agreed on the recommended activities and deliverables, and identified tools to automate and support the task. For example we do more code reviews. As peer reviews are resource intensive, we only do them for complex parts of a product. As a complement, we are using static code checking tools, like FindBugs and Checkstyle. We also encourage unit testing and have agreed on a minimum level of test coverage recommended for all products, measured using Clover. Each of these tools is well integrated with our IDE (Eclipse) and give instant feedback to the developer about the quality of their code. The major challenges of SIP have been to 1) agree on common standards and configurations, for example common code formatting and Javadoc documentation guidelines, and 2) how to encourage the developers to do QA. To address the second point, we have successfully implemented 'SIP days', i.e. one day dedicated to QA work to which the whole group of developers participates, and 'Top/Flop' lists, clearly indicating the best and worst products with regards to SIP guidelines and standards, for example test coverage. This paper presents the SIP initiative in more detail, summarizing our experience since two years and our future plans. (authors)

  16. Evaluation of The Virtual Cells Software: a Teaching Tool

    Directory of Open Access Journals (Sweden)

    C.C.P. da Silva

    2005-07-01

    handling,  having an accessible language,  supporting the  software  as an education  tool that is capable  to facilitate  the learning  of the fundamental concepts  about the theme.  Other  workshops are programmed to happen with participants from different educational institutions of Sao Carlos  city,  with the goal to broaden our sample.

  17. PC Software graphics tool for conceptual design of space/planetary electrical power systems

    Science.gov (United States)

    Truong, Long V.

    1995-01-01

    This paper describes the Decision Support System (DSS), a personal computer software graphics tool for designing conceptual space and/or planetary electrical power systems. By using the DSS, users can obtain desirable system design and operating parameters, such as system weight, electrical distribution efficiency, and bus power. With this tool, a large-scale specific power system was designed in a matter of days. It is an excellent tool to help designers make tradeoffs between system components, hardware architectures, and operation parameters in the early stages of the design cycle. The DSS is a user-friendly, menu-driven tool with online help and a custom graphical user interface. An example design and results are illustrated for a typical space power system with multiple types of power sources, frequencies, energy storage systems, and loads.

  18. APERO, AN OPEN SOURCE BUNDLE ADJUSMENT SOFTWARE FOR AUTOMATIC CALIBRATION AND ORIENTATION OF SET OF IMAGES

    Directory of Open Access Journals (Sweden)

    M. Pierrot Deseilligny

    2012-09-01

    Full Text Available IGN has developed a set of photogrammetric tools, APERO and MICMAC, for computing 3D models from set of images. This software, developed initially for its internal needs are now delivered as open source code. This paper focuses on the presentation of APERO the orientation software. Compared to some other free software initiatives, it is probably more complex but also more complete, its targeted user is rather professionals (architects, archaeologist, geomophologist than people. APERO uses both computer vision approach for estimation of initial solution and photogrammetry for a rigorous compensation of the total error; it has a large library of parametric model of distortion allowing a precise modelization of all the kind of pinhole camera we know, including several model of fish-eye; there is also several tools for geo-referencing the result. The results are illustrated on various application, including the data-set of 3D-Arch workshop.

  19. The Astrophysics Source Code Library: Supporting software publication and citation

    Science.gov (United States)

    Allen, Alice; Teuben, Peter

    2018-01-01

    The Astrophysics Source Code Library (ASCL, ascl.net), established in 1999, is a free online registry for source codes used in research that has appeared in, or been submitted to, peer-reviewed publications. The ASCL is indexed by the SAO/NASA Astrophysics Data System (ADS) and Web of Science and is citable by using the unique ascl ID assigned to each code. In addition to registering codes, the ASCL can house archive files for download and assign them DOIs. The ASCL advocations for software citation on par with article citation, participates in multidiscipinary events such as Force11, OpenCon, and the annual Workshop on Sustainable Software for Science, works with journal publishers, and organizes Special Sessions and Birds of a Feather meetings at national and international conferences such as Astronomical Data Analysis Software and Systems (ADASS), European Week of Astronomy and Space Science, and AAS meetings. In this presentation, I will discuss some of the challenges of gathering credit for publishing software and ideas and efforts from other disciplines that may be useful to astronomy.

  20. How Open Source Has Changed the Software Industry: Perspectives from Open Source Entrepreneurs

    OpenAIRE

    Lindman, Juho; Rajala, Risto

    2012-01-01

    The emergence of F/LOSS (free/libre open source software) has triggered several changes in the software industry. F/LOSS has been cited as an archetypal form of open innovation; it consists of the convergence and collaboration of like-minded parties. An increasing number of software firms have taken upon this approach to link outsiders into their service development and product design. Also, software firms have been increasingly grounded their business models on user-centric and service-orien...

  1. ELER software - a new tool for urban earthquake loss assessment

    Science.gov (United States)

    Hancilar, U.; Tuzun, C.; Yenidogan, C.; Erdik, M.

    2010-12-01

    ATC-55 (Yang, 2005). An urban loss assessment exercise for a scenario earthquake for the city of Istanbul is conducted and physical and social losses are presented. Damage to the urban environment is compared to the results obtained from similar software, i.e. KOERILoss (KOERI, 2002) and DBELA (Crowley et al., 2004). The European rapid loss estimation tool is expected to help enable effective emergency response, on both local and global level, as well as public information.

  2. Integrating HCI Specialists into Open Source Software Development Projects

    Science.gov (United States)

    Hedberg, Henrik; Iivari, Netta

    Typical open source software (OSS) development projects are organized around technically talented developers, whose communication is based on technical aspects and source code. Decision-making power is gained through proven competence and activity in the project, and non-technical end-user opinions are too many times neglected. In addition, also human-computer interaction (HCI) specialists have encountered difficulties in trying to participate in OSS projects, because there seems to be no clear authority and responsibility for them. In this paper, based on HCI and OSS literature, we introduce an extended OSS development project organization model that adds a new level of communication and roles for attending human aspects of software. The proposed model makes the existence of HCI specialists visible in the projects, and promotes interaction between developers and the HCI specialists in the course of a project.

  3. PySE: Software for extracting sources from radio images

    Science.gov (United States)

    Carbone, D.; Garsden, H.; Spreeuw, H.; Swinbank, J. D.; van der Horst, A. J.; Rowlinson, A.; Broderick, J. W.; Rol, E.; Law, C.; Molenaar, G.; Wijers, R. A. M. J.

    2018-04-01

    PySE is a Python software package for finding and measuring sources in radio telescope images. The software was designed to detect sources in the LOFAR telescope images, but can be used with images from other radio telescopes as well. We introduce the LOFAR Telescope, the context within which PySE was developed, the design of PySE, and describe how it is used. Detailed experiments on the validation and testing of PySE are then presented, along with results of performance testing. We discuss some of the current issues with the algorithms implemented in PySE and their interaction with LOFAR images, concluding with the current status of PySE and its future development.

  4. Towards easing the configuration and new team member accommodation for open source software based portals

    Science.gov (United States)

    Fu, L.; West, P.; Zednik, S.; Fox, P. A.

    2013-12-01

    For simple portals such as vocabulary based services, which contain small amounts of data and require only hyper-textual representation, it is often an overkill to adopt the whole software stack of database, middleware and front end, or to use a general Web development framework as the starting point of development. Directly combining open source software is a much more favorable approach. However, our experience with the Coastal and Marine Spatial Planning Vocabulary (CMSPV) service portal shows that there are still issues such as system configuration and accommodating a new team member that need to be handled carefully. In this contribution, we share our experience in the context of the CMSPV portal, and focus on the tools and mechanisms we've developed to ease the configuration job and the incorporation process of new project members. We discuss the configuration issues that arise when we don't have complete control over how the software in use is configured and need to follow existing configuration styles that may not be well documented, especially when multiple pieces of such software need to work together as a combined system. As for the CMSPV portal, it is built on two pieces of open source software that are still under rapid development: a Fuseki data server and Epimorphics Linked Data API (ELDA) front end. Both lack mature documentation and tutorials. We developed comparison and labeling tools to ease the problem of system configuration. Another problem that slowed down the project is that project members came and went during the development process, so new members needed to start with a partially configured system and incomplete documentation left by old members. We developed documentation/tutorial maintenance mechanisms based on our comparison and labeling tools to make it easier for the new members to be incorporated into the project. These tools and mechanisms also provided benefit to other projects that reused the software components from the CMSPV

  5. Updates on resources, software tools, and databases for plant proteomics in 2016-2017.

    Science.gov (United States)

    Misra, Biswapriya B

    2018-02-08

    Proteomics data processing, annotation, and analysis can often lead to major hurdles in large-scale high-throughput bottom-up proteomics experiments. Given the recent rise in protein-based big datasets being generated, efforts in in silico tool development occurrences have had an unprecedented increase; so much so, that it has become increasingly difficult to keep track of all the advances in a particular academic year. However, these tools benefit the plant proteomics community in circumventing critical issues in data analysis and visualization, as these continually developing open-source and community-developed tools hold potential in future research efforts. This review will aim to introduce and summarize more than 50 software tools, databases, and resources developed and published during 2016-2017 under the following categories: tools for data pre-processing and analysis, statistical analysis tools, peptide identification tools, databases and spectral libraries, and data visualization and interpretation tools. Intended for a well-informed proteomics community, finally, efforts in data archiving and validation datasets for the community will be discussed as well. Additionally, the author delineates the current and most commonly used proteomics tools in order to introduce novice readers to this -omics discovery platform. © 2018 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  6. Instrumentino: An Open-Source Software for Scientific Instruments

    OpenAIRE

    Koenka, Israel Joel; Sáiz, Jorge; Hauser, Peter C.

    2015-01-01

    Scientists often need to build dedicated computer-controlled experimental systems. For this purpose, it is becoming common to employ open-source microcontroller platforms, such as the Arduino. These boards and associated integrated software development environments provide affordable yet powerful solutions for the implementation of hardware control of transducers and acquisition of signals from detectors and sensors. It is, however, a challenge to write programs that allow interactive use of ...

  7. A software tool for soil clean-up technology selection

    International Nuclear Information System (INIS)

    Vranes, S.; Gonzalez-Valencia, E.; Lodolo, A.; Miertus, S.

    2002-01-01

    Soil remediation is a difficult, time-consuming and expensive operation. A variety of mature and emerging soil remediation technologies is available and future trends in remediation will include continued competition among environmental service companies and technology developers, which will definitely result in further increase in the clean-up options. Consequently, the demand has enhanced developing decision support tools that could help the decision makers to select the most appropriate technology for the specific contaminated site, before the costly remedial actions are taken. Therefore, a software tool for soil clean-up technology selection is currently being developed with the aim of closely working with human decision makers (site owners, local community representatives, environmentalists, regulators, etc.) to assess the available technologies and preliminarily select the preferred remedial options. The analysis for the identification of the best remedial options is based on technical, financial, environmental, and social criteria. These criteria are ranked by all involved parties to determine their relative importance for a particular project. (author)

  8. Open source software and crowdsourcing for energy analysis

    International Nuclear Information System (INIS)

    Bazilian, Morgan; Rice, Andrew; Rotich, Juliana; Howells, Mark; DeCarolis, Joseph; Macmillan, Stuart; Brooks, Cameron; Bauer, Florian; Liebreich, Michael

    2012-01-01

    Informed energy decision making requires effective software, high-quality input data, and a suitably trained user community. Developing these resources can be expensive and time consuming. Even when data and tools are intended for public re-use they often come with technical, legal, economic and social barriers that make them difficult to adopt, adapt and combine for use in new contexts. We focus on the promise of open, publically accessible software and data as well as crowdsourcing techniques to develop robust energy analysis tools that can deliver crucial, policy-relevant insight, particularly in developing countries, where planning resources are highly constrained—and the need to adapt these resources and methods to the local context is high. We survey existing research, which argues that these techniques can produce high-quality results, and also explore the potential role that linked, open data can play in both supporting the modelling process and in enhancing public engagement with energy issues. - Highlights: ► We focus on the promise of open, publicly accessible software and data. ► These emerging techniques can produce high-quality results for energy analysis. ► Developing economies require new techniques for energy planning.

  9. EUV sources for the alpha-tools

    Science.gov (United States)

    Pankert, Joseph; Apetz, Rolf; Bergmann, Klaus; Damen, Marcel; Derra, Günther; Franken, Oliver; Janssen, Maurice; Jonkers, Jeroen; Klein, Jürgen; Kraus, Helmar; Krücken, Thomas; List, Andreas; Loeken, Micheal; Mader, Arnaud; Metzmacher, Christof; Neff, Willi; Probst, Sven; Prümmer, Ralph; Rosier, Oliver; Schwabe, Stefan; Seiwert, Stefan; Siemons, Guido; Vaudrevange, Dominik; Wagemann, Dirk; Weber, Achim; Zink, Peter; Zitzen, Oliver

    2006-03-01

    In this paper, we report on the recent progress of the Philips Extreme UV source. The Philips source concept is based on a discharge plasma ignited in a Sn vapor plume that is ablated by a laser pulse. Using rotating electrodes covered with a regenerating tin surface, the problems of electrode erosion and power scaling are fundamentally solved. Most of the work of the past year has been dedicated to develop a lamp system which is operating very reliably and stable under full scanner remote control. Topics addressed were the development of the scanner interface, a dose control system, thermo-mechanical design, positional stability of the source, tin handling, and many more. The resulting EUV source-the Philips NovaTin(R) source-can operate at more than 10kW electrical input power and delivers 200W in-band EUV into 2π continuously. The source is very small, so nearly 100% of the EUV radiation can be collected within etendue limits. The lamp system is fully automated and can operate unattended under full scanner remote control. 500 Million shots of continuous operation without interruption have been realized, electrode lifetime is at least 2 Billion shots. Three sources are currently being prepared, two of them will be integrated into the first EUV Alpha Demonstration tools of ASML. The debris problem was reduced to a level which is well acceptable for scanner operation. First, a considerable reduction of the Sn emission of the source has been realized. The debris mitigation system is based on a two-step concept using a foil trap based stage and a chemical cleaning stage. Both steps were improved considerably. A collector lifetime of 1 Billion shots is achieved, after this operating time a cleaning would be applied. The cleaning step has been verified to work with tolerable Sn residues. From the experimental results, a total collector lifetime of more than 10 Billion shots can be expected.

  10. SNPdetector: a software tool for sensitive and accurate SNP detection.

    Directory of Open Access Journals (Sweden)

    Jinghui Zhang

    2005-10-01

    Full Text Available Identification of single nucleotide polymorphisms (SNPs and mutations is important for the discovery of genetic predisposition to complex diseases. PCR resequencing is the method of choice for de novo SNP discovery. However, manual curation of putative SNPs has been a major bottleneck in the application of this method to high-throughput screening. Therefore it is critical to develop a more sensitive and accurate computational method for automated SNP detection. We developed a software tool, SNPdetector, for automated identification of SNPs and mutations in fluorescence-based resequencing reads. SNPdetector was designed to model the process of human visual inspection and has a very low false positive and false negative rate. We demonstrate the superior performance of SNPdetector in SNP and mutation analysis by comparing its results with those derived by human inspection, PolyPhred (a popular SNP detection tool, and independent genotype assays in three large-scale investigations. The first study identified and validated inter- and intra-subspecies variations in 4,650 traces of 25 inbred mouse strains that belong to either the Mus musculus species or the M. spretus species. Unexpected heterozygosity in CAST/Ei strain was observed in two out of 1,167 mouse SNPs. The second study identified 11,241 candidate SNPs in five ENCODE regions of the human genome covering 2.5 Mb of genomic sequence. Approximately 50% of the candidate SNPs were selected for experimental genotyping; the validation rate exceeded 95%. The third study detected ENU-induced mutations (at 0.04% allele frequency in 64,896 traces of 1,236 zebra fish. Our analysis of three large and diverse test datasets demonstrated that SNPdetector is an effective tool for genome-scale research and for large-sample clinical studies. SNPdetector runs on Unix/Linux platform and is available publicly (http://lpg.nci.nih.gov.

  11. A software tool for rapid flood inundation mapping

    Science.gov (United States)

    Verdin, James; Verdin, Kristine; Mathis, Melissa L.; Magadzire, Tamuka; Kabuchanga, Eric; Woodbury, Mark; Gadain, Hussein

    2016-06-02

    The GIS Flood Tool (GFT) was developed by the U.S. Geological Survey with support from the U.S. Agency for International Development’s Office of U.S. Foreign Disaster Assistance to provide a means for production of reconnaissance-level flood inundation mapping for data-sparse and resource-limited areas of the world. The GFT has also attracted interest as a tool for rapid assessment flood inundation mapping for the Flood Inundation Mapping Program of the U.S. Geological Survey. The GFT can fill an important gap for communities that lack flood inundation mapping by providing a first-estimate of inundation zones, pending availability of resources to complete an engineering study. The tool can also help identify priority areas for application of scarce flood inundation mapping resources. The technical basis of the GFT is an application of the Manning equation for steady flow in an open channel, operating on specially processed digital elevation data. The GFT is implemented as a software extension in ArcGIS. Output maps from the GFT were validated at 11 sites with inundation maps produced previously by the Flood Inundation Mapping Program using standard one-dimensional hydraulic modeling techniques. In 80 percent of the cases, the GFT inundation patterns matched 75 percent or more of the one-dimensional hydraulic model inundation patterns. Lower rates of pattern agreement were seen at sites with low relief and subtle surface water divides. Although the GFT is simple to use, it should be applied with the oversight or review of a qualified hydraulic engineer who understands the simplifying assumptions of the approach.

  12. NASA Operational Simulator for Small Satellites: Tools for Software Based Validation and Verification of Small Satellites

    Science.gov (United States)

    Grubb, Matt

    2016-01-01

    The NASA Operational Simulator for Small Satellites (NOS3) is a suite of tools to aid in areas such as software development, integration test (IT), mission operations training, verification and validation (VV), and software systems check-out. NOS3 provides a software development environment, a multi-target build system, an operator interface-ground station, dynamics and environment simulations, and software-based hardware models. NOS3 enables the development of flight software (FSW) early in the project life cycle, when access to hardware is typically not available. For small satellites there are extensive lead times on many of the commercial-off-the-shelf (COTS) components as well as limited funding for engineering test units (ETU). Considering the difficulty of providing a hardware test-bed to each developer tester, hardware models are modeled based upon characteristic data or manufacturers data sheets for each individual component. The fidelity of each hardware models is such that FSW executes unaware that physical hardware is not present. This allows binaries to be compiled for both the simulation environment, and the flight computer, without changing the FSW source code. For hardware models that provide data dependent on the environment, such as a GPS receiver or magnetometer, an open-source tool from NASA GSFC (42 Spacecraft Simulation) is used to provide the necessary data. The underlying infrastructure used to transfer messages between FSW and the hardware models can also be used to monitor, intercept, and inject messages, which has proven to be beneficial for VV of larger missions such as James Webb Space Telescope (JWST). As hardware is procured, drivers can be added to the environment to enable hardware-in-the-loop (HWIL) testing. When strict time synchronization is not vital, any number of combinations of hardware components and software-based models can be tested. The open-source operator interface used in NOS3 is COSMOS from Ball Aerospace. For

  13. A Quantitative Analysis of Open Source Software's Acceptability as Production-Quality Code

    Science.gov (United States)

    Fischer, Michael

    2011-01-01

    The difficulty in writing defect-free software has been long acknowledged both by academia and industry. A constant battle occurs as developers seek to craft software that works within aggressive business schedules and deadlines. Many tools and techniques are used in attempt to manage these software projects. Software metrics are a tool that has…

  14. EINSTEIN - Expert system for an Intelligent Supply of Thermal Energy in Industry. Audit methodology and software tool

    Energy Technology Data Exchange (ETDEWEB)

    Schweiger, Hans; Danov, Stoyan (energyXperts.NET (Spain)); Vannoni, Claudia; Facci, Enrico (Sapienza Univ. of Rome, Dept. of Mechanics and Aeronautics, Rome (Italy)); Brunner, Christoph; Slawitsch, Bettina (Joanneum Research, Inst. of Sustainable Techniques and Systems - JOINTS, Graz (Austria))

    2009-07-01

    For optimising thermal energy supply in industry, a holistic integral approach is required that includes possibilities of demand reduction by heat recovery and process integration, and by an intelligent combination of efficient heat and cold supply technologies. EINSTEIN is a tool-kit for fast and high quality thermal energy audits in industry, composed by an audit guide describing the methodology and by a software tool that guides the auditor through all the audit steps. The main features of EINSTEIN are: (1) a basic questionnaire helps for systematic collection of the necessary information with the possibility to acquire data by distance; (2) special tools allow for fast consistency checking and estimation of missing data, so that already with very few data some first predictions can be made; (3) the data processing is based on standardised models for industrial processes and industrial heat supply systems; (4) semi-automatization: the software tool gives support to decision making for the generation of alternative heat and cold supply proposals, carries out automatically all the necessary calculations, including dynamic simulation of the heat supply system, and creates a standard audit report. The software tool includes modules for benchmarking, automatic design of heat exchanger networks, and design assistants for the heat and cold supply system. The core of the expert system software tool is available for free, as an open source software project. This type of software development has shown to be very efficient for dissemination of knowledge and for the continuous maintenance and improvement thanks to user contributions.

  15. HITCal: a software tool for analysis of video head impulse test responses.

    Science.gov (United States)

    Rey-Martinez, Jorge; Batuecas-Caletrio, Angel; Matiño, Eusebi; Perez Fernandez, Nicolás

    2015-09-01

    The developed software (HITCal) may be a useful tool in the analysis and measurement of the saccadic video head impulse test (vHIT) responses and with the experience obtained during its use the authors suggest that HITCal is an excellent method for enhanced exploration of vHIT outputs. To develop a (software) method to analyze and explore the vHIT responses, mainly saccades. HITCal was written using a computational development program; the function to access a vHIT file was programmed; extended head impulse exploration and measurement tools were created and an automated saccade analysis was developed using an experimental algorithm. For pre-release HITCal laboratory tests, a database of head impulse tests (HITs) was created with the data collected retrospectively in three reference centers. This HITs database was evaluated by humans and was also computed with HITCal. The authors have successfully built HITCal and it has been released as open source software; the developed software was fully operative and all the proposed characteristics were incorporated in the released version. The automated saccades algorithm implemented in HITCal has good concordance with the assessment by human observers (Cohen's kappa coefficient = 0.7).

  16. Open source engineering and sustainability tools for the built environment

    NARCIS (Netherlands)

    Coenders, J.L.

    2013-01-01

    This paper presents two novel open source software developments for design and engineering in the built environment. The first development, called “sustainability-open” [1], aims on providing open source design, analysis and assessment software source code for (environmental) performance of

  17. A SOFTWARE TOOL TO COMPARE MEASURED AND SIMULATED BUILDING ENERGY PERFORMANCE DATA

    Energy Technology Data Exchange (ETDEWEB)

    Maile, Tobias; Bazjanac, Vladimir; O' Donnell, James; Garr, Matthew

    2011-11-01

    Building energy performance is often inadequate when compared to design goals. To link design goals to actual operation one can compare measured with simulated energy performance data. Our previously developed comparison approach is the Energy Performance Comparison Methodology (EPCM), which enables the identification of performance problems based on a comparison of measured and simulated performance data. In context of this method, we developed a software tool that provides graphing and data processing capabilities of the two performance data sets. The software tool called SEE IT (Stanford Energy Efficiency Information Tool) eliminates the need for manual generation of data plots and data reformatting. SEE IT makes the generation of time series, scatter and carpet plots independent of the source of data (measured or simulated) and provides a valuable tool for comparing measurements with simulation results. SEE IT also allows assigning data points on a predefined building object hierarchy and supports different versions of simulated performance data. This paper briefly introduces the EPCM, describes the SEE IT tool and illustrates its use in the context of a building case study.

  18. User Guide for the Plotting Software for the Los Alamos National Laboratory Nuclear Weapons Analysis Tools Version 2.0

    Energy Technology Data Exchange (ETDEWEB)

    Cleland, Timothy James [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

    2018-01-02

    The Los Alamos National Laboratory Plotting Software for the Nuclear Weapons Analysis Tools is a Java™ application based upon the open source library JFreeChart. The software provides a capability for plotting data on graphs with a rich variety of display options while allowing the viewer interaction via graph manipulation and scaling to best view the data. The graph types include XY plots, Date XY plots, Bar plots and Histogram plots.

  19. Software

    Energy Technology Data Exchange (ETDEWEB)

    Macedo, R.; Budd, G.; Ross, E.; Wells, P.

    2010-07-15

    The software section of this journal presented new software programs that have been developed to help in the exploration and development of hydrocarbon resources. Software provider IHS Inc. has made additions to its geological and engineering analysis software tool, IHS PETRA, a product used by geoscientists and engineers to visualize, analyze and manage well production, well log, drilling, reservoir, seismic and other related information. IHS PETRA also includes a directional well module and a decline curve analysis module to improve analysis capabilities in unconventional reservoirs. Petris Technology Inc. has developed a software to help manage the large volumes of data. PetrisWinds Enterprise (PWE) helps users find and manage wellbore data, including conventional wireline and MWD core data; analysis core photos and images; waveforms and NMR; and external files documentation. Ottawa-based Ambercore Software Inc. has been collaborating with Nexen on the Petroleum iQ software for steam assisted gravity drainage (SAGD) producers. Petroleum iQ integrates geology and geophysics data with engineering data in 3D and 4D. Calgary-based Envirosoft Corporation has developed a software that reduces the costly and time-consuming effort required to comply with Directive 39 of the Alberta Energy Resources Conservation Board. The product includes an emissions modelling software. Houston-based Seismic Micro-Technology (SMT) has developed the Kingdom software that features the latest in seismic interpretation. Holland-based Joa Oil and Gas and Calgary-based Computer Modelling Group have both supplied the petroleum industry with advanced reservoir simulation software that enables reservoir interpretation. The 2010 software survey included a guide to new software applications designed to facilitate petroleum exploration, drilling and production activities. Oil and gas producers can use the products for a range of functions, including reservoir characterization and accounting. In

  20. QCScreen: a software tool for data quality control in LC-HRMS based metabolomics.

    Science.gov (United States)

    Simader, Alexandra Maria; Kluger, Bernhard; Neumann, Nora Katharina Nicole; Bueschl, Christoph; Lemmens, Marc; Lirk, Gerald; Krska, Rudolf; Schuhmacher, Rainer

    2015-10-24

    Metabolomics experiments often comprise large numbers of biological samples resulting in huge amounts of data. This data needs to be inspected for plausibility before data evaluation to detect putative sources of error e.g. retention time or mass accuracy shifts. Especially in liquid chromatography-high resolution mass spectrometry (LC-HRMS) based metabolomics research, proper quality control checks (e.g. for precision, signal drifts or offsets) are crucial prerequisites to achieve reliable and comparable results within and across experimental measurement sequences. Software tools can support this process. The software tool QCScreen was developed to offer a quick and easy data quality check of LC-HRMS derived data. It allows a flexible investigation and comparison of basic quality-related parameters within user-defined target features and the possibility to automatically evaluate multiple sample types within or across different measurement sequences in a short time. It offers a user-friendly interface that allows an easy selection of processing steps and parameter settings. The generated results include a coloured overview plot of data quality across all analysed samples and targets and, in addition, detailed illustrations of the stability and precision of the chromatographic separation, the mass accuracy and the detector sensitivity. The use of QCScreen is demonstrated with experimental data from metabolomics experiments using selected standard compounds in pure solvent. The application of the software identified problematic features, samples and analytical parameters and suggested which data files or compounds required closer manual inspection. QCScreen is an open source software tool which provides a useful basis for assessing the suitability of LC-HRMS data prior to time consuming, detailed data processing and subsequent statistical analysis. It accepts the generic mzXML format and thus can be used with many different LC-HRMS platforms to process both multiple

  1. Fluctuating Finite Element Analysis (FFEA): A continuum mechanics software tool for mesoscale simulation of biomolecules.

    Science.gov (United States)

    Solernou, Albert; Hanson, Benjamin S; Richardson, Robin A; Welch, Robert; Read, Daniel J; Harlen, Oliver G; Harris, Sarah A

    2018-03-01

    Fluctuating Finite Element Analysis (FFEA) is a software package designed to perform continuum mechanics simulations of proteins and other globular macromolecules. It combines conventional finite element methods with stochastic thermal noise, and is appropriate for simulations of large proteins and protein complexes at the mesoscale (length-scales in the range of 5 nm to 1 μm), where there is currently a paucity of modelling tools. It requires 3D volumetric information as input, which can be low resolution structural information such as cryo-electron tomography (cryo-ET) maps or much higher resolution atomistic co-ordinates from which volumetric information can be extracted. In this article we introduce our open source software package for performing FFEA simulations which we have released under a GPLv3 license. The software package includes a C ++ implementation of FFEA, together with tools to assist the user to set up the system from Electron Microscopy Data Bank (EMDB) or Protein Data Bank (PDB) data files. We also provide a PyMOL plugin to perform basic visualisation and additional Python tools for the analysis of FFEA simulation trajectories. This manuscript provides a basic background to the FFEA method, describing the implementation of the core mechanical model and how intermolecular interactions and the solvent environment are included within this framework. We provide prospective FFEA users with a practical overview of how to set up an FFEA simulation with reference to our publicly available online tutorials and manuals that accompany this first release of the package.

  2. Software tools for the simple processing of a real-time system input/output. Application to the survey/check of a ion source by a mini-computer

    International Nuclear Information System (INIS)

    Laudillay, Y.

    1979-01-01

    This I/0 software is composed by the set of modules allowing exchanges of data between computer and process to control. It is developed taking several types of problems into account. Particularly the use of I/0 must be easy for the pedestrian and I/0 system should be able to evolve because the number of parameters can increase or lessen and also, the characteristics of some parameters can change. The respect of these conditions requires some particular solutions. For example, it is preferable for the control process software to be written in high level language and the I/0 software to be accessible in this language. It is important, also that hardware and software intermediate levels for exchanges of data be easy for user writing a program. The other problems, typical of the real time check are determined by use of the computer standard I/0. However some further modules are necessary to obtain a real time I/0 system having satisfying performances [fr

  3. Performance Evaluation of a Software Engineering Tool for Automated Design of Cooling Systems in Injection Moulding

    DEFF Research Database (Denmark)

    Jauregui-Becker, Juan M.; Tosello, Guido; van Houten, Fred J.A.M.

    2013-01-01

    This paper presents a software tool for automating the design of cooling systems for injection moulding and a validation of its performance. Cooling system designs were automatically generated by the proposed software tool and by applying a best practice tool engineering design approach. The two...

  4. Can agile software tools bring the benefits of a task board to globally distributed teams?

    NARCIS (Netherlands)

    Katsma, Christiaan; Amrit, Chintan Amrit; van Hillegersberg, Jos; Sikkel, Nicolaas; Oshri, Ilan; Kotlarsky, Julia; Willcocks, Leslie P.

    Software-based tooling has become an essential part of globally disitrbuted software development. In this study we focus on the usage of such tools and task boards in particular. We investigate the deployment of these tools through a field research in 4 different companies that feature agile and

  5. The classification and evaluation of Computer-Aided Software Engineering tools

    OpenAIRE

    Manley, Gary W.

    1990-01-01

    Approved for public release; distribution unlimited. The use of Computer-Aided Software Engineering (CASE) tools has been viewed as a remedy for the software development crisis by achieving improved productivity and system quality via the automation of all or part of the software engineering process. The proliferation and tremendous variety of tools available have stretched the understanding of experienced practitioners and has had a profound impact on the software engineering process itse...

  6. Conceptual Architecture of Building Energy Management Open Source Software (BEMOSS)

    Energy Technology Data Exchange (ETDEWEB)

    Khamphanchai, Warodom; Saha, Avijit; Rathinavel, Kruthika; Kuzlu, Murat; Pipattanasomporn, Manisa; Rahman, Saifur; Akyol, Bora A.; Haack, Jereme N.

    2014-12-01

    The objective of this paper is to present a conceptual architecture of a Building Energy Management Open Source Software (BEMOSS) platform. The proposed BEMOSS platform is expected to improve sensing and control of equipment in small- and medium-sized buildings, reduce energy consumption and help implement demand response (DR). It aims to offer: scalability, robustness, plug and play, open protocol, interoperability, cost-effectiveness, as well as local and remote monitoring. In this paper, four essential layers of BEMOSS software architecture -- namely User Interface, Application and Data Management, Operating System and Framework, and Connectivity layers -- are presented. A laboratory test bed to demonstrate the functionality of BEMOSS located at the Advanced Research Institute of Virginia Tech is also briefly described.

  7. ABCD, an Open Source Software for Modern Libraries

    Directory of Open Access Journals (Sweden)

    Sangeeta Namdev Dhamdhere

    2011-12-01

    Full Text Available Nowadays, librarians are using various kinds of open source software for different purposes such as library automation, digitization, institutional repository, content management. ABCD, acronym for Automatisación de Bibliotécas y Centros de Documentación, is one of such software. It caters to almost all present needs of modern libraries of any sizes. It offers a solution to library automation with ISBD as well as local formats. It has excellent indexing and retrieval features based on UNESCO’s ISIS technology, a web OPAC, and a library Portal with integrated meta-search and content management system to manage online as well as offline digital resources and physical documents and media.

  8. PyElph - a software tool for gel images analysis and phylogenetics

    Directory of Open Access Journals (Sweden)

    Pavel Ana Brânduşa

    2012-01-01

    Full Text Available Abstract Background This paper presents PyElph, a software tool which automatically extracts data from gel images, computes the molecular weights of the analyzed molecules or fragments, compares DNA patterns which result from experiments with molecular genetic markers and, also, generates phylogenetic trees computed by five clustering methods, using the information extracted from the analyzed gel image. The software can be successfully used for population genetics, phylogenetics, taxonomic studies and other applications which require gel image analysis. Researchers and students working in molecular biology and genetics would benefit greatly from the proposed software because it is free, open source, easy to use, has a friendly Graphical User Interface and does not depend on specific image acquisition devices like other commercial programs with similar functionalities do. Results PyElph software tool is entirely implemented in Python which is a very popular programming language among the bioinformatics community. It provides a very friendly Graphical User Interface which was designed in six steps that gradually lead to the results. The user is guided through the following steps: image loading and preparation, lane detection, band detection, molecular weights computation based on a molecular weight marker, band matching and finally, the computation and visualization of phylogenetic trees. A strong point of the software is the visualization component for the processed data. The Graphical User Interface provides operations for image manipulation and highlights lanes, bands and band matching in the analyzed gel image. All the data and images generated in each step can be saved. The software has been tested on several DNA patterns obtained from experiments with different genetic markers. Examples of genetic markers which can be analyzed using PyElph are RFLP (Restriction Fragment Length Polymorphism, AFLP (Amplified Fragment Length Polymorphism, RAPD

  9. Clustering and Flow Conservation Monitoring Tool for Software Defined Networks

    Directory of Open Access Journals (Sweden)

    Jesús Antonio Puente Fernández

    2018-04-01

    Full Text Available Prediction systems present some challenges on two fronts: the relation between video quality and observed session features and on the other hand, dynamics changes on the video quality. Software Defined Networks (SDN is a new concept of network architecture that provides the separation of control plane (controller and data plane (switches in network devices. Due to the existence of the southbound interface, it is possible to deploy monitoring tools to obtain the network status and retrieve a statistics collection. Therefore, achieving the most accurate statistics depends on a strategy of monitoring and information requests of network devices. In this paper, we propose an enhanced algorithm for requesting statistics to measure the traffic flow in SDN networks. Such an algorithm is based on grouping network switches in clusters focusing on their number of ports to apply different monitoring techniques. Such grouping occurs by avoiding monitoring queries in network switches with common characteristics and then, by omitting redundant information. In this way, the present proposal decreases the number of monitoring queries to switches, improving the network traffic and preventing the switching overload. We have tested our optimization in a video streaming simulation using different types of videos. The experiments and comparison with traditional monitoring techniques demonstrate the feasibility of our proposal maintaining similar values decreasing the number of queries to the switches.

  10. Clustering and Flow Conservation Monitoring Tool for Software Defined Networks.

    Science.gov (United States)

    Puente Fernández, Jesús Antonio; García Villalba, Luis Javier; Kim, Tai-Hoon

    2018-04-03

    Prediction systems present some challenges on two fronts: the relation between video quality and observed session features and on the other hand, dynamics changes on the video quality. Software Defined Networks (SDN) is a new concept of network architecture that provides the separation of control plane (controller) and data plane (switches) in network devices. Due to the existence of the southbound interface, it is possible to deploy monitoring tools to obtain the network status and retrieve a statistics collection. Therefore, achieving the most accurate statistics depends on a strategy of monitoring and information requests of network devices. In this paper, we propose an enhanced algorithm for requesting statistics to measure the traffic flow in SDN networks. Such an algorithm is based on grouping network switches in clusters focusing on their number of ports to apply different monitoring techniques. Such grouping occurs by avoiding monitoring queries in network switches with common characteristics and then, by omitting redundant information. In this way, the present proposal decreases the number of monitoring queries to switches, improving the network traffic and preventing the switching overload. We have tested our optimization in a video streaming simulation using different types of videos. The experiments and comparison with traditional monitoring techniques demonstrate the feasibility of our proposal maintaining similar values decreasing the number of queries to the switches.

  11. Software Quality Assessment Tool Based on Meta-Models

    OpenAIRE

    Doneva Rositsa; Gaftandzhieva Silvia; Doneva Zhelyana; Staevsky Nevena

    2015-01-01

    In the software industry it is indisputably essential to control the quality of produced software systems in terms of capabilities for easy maintenance, reuse, portability and others in order to ensure reliability in the software development. But it is also clear that it is very difficult to achieve such a control through a ‘manual’ management of quality.There are a number of approaches for software quality assurance based typically on software quality models (e.g. ISO 9126, McCall’s, Boehm’s...

  12. Re-engineering software systems in the Department of Defense using integrated computer aided software engineering tools

    OpenAIRE

    Jennings, Charles A.

    1992-01-01

    Approved for public release; distribution is unlimited The Department of Defense (DoD) is plagues with severe cost overruns and delays in developing software systems. Existing software within Dod, some developed 15-to 20 years ago, require continual maintenance and modification. Major difficulties arise with maintaining older systems due to cryptic source code and a lack of adequate documentation. To remedy this situation, the DoD, is pursuing the integrated computer aided software engi...

  13. Aging and Plant Life Management with the Software Tool COMSY

    International Nuclear Information System (INIS)

    Nopper, Helmut; Rossner, Roland; Zander, Andre

    2006-01-01

    Within the scope of PLEX, a systematic and efficient ageing and plant life management system is becoming more and more important to ensure a safe and economical power plant operation in spite of continuous plant ageing. For the methodical implementation of PLIM and PLEX strategies, AREVA NP has developed the software tool COMSY. This knowledge-based program integrates degradation analysis tools with an inspection data management system. COMSY provides the capability to establish a program guided technical documentation by utilizing a virtual plant model which includes information regarding thermal hydraulic operation, water chemical conditions and materials applied for mechanical components. It provides the option to perform a plant-wide screening for identifying system areas, which are sensitive for degradation mechanisms typically experienced in nuclear power plants (FAC, corrosion fatigue, IGSCC, Pitting, etc.). If a system area is identified as being susceptible to degradation, a detailed analysis function enables the condition-oriented service life evaluation of vessels and piping systems in order to localize and conservatively quantify the effect of degradation. Based on these forecasts with COMSY, specific strategies can be developed to mitigate the effect of degradation and inspection activities can be focused on degradation sensitive areas. In addition, a risk-informed assessment tool serves to optimize inspection activities in respect to degradation potential and the associated damage consequence. After an in-service inspection is performed for a distinct location, the inspection data is to be evaluated according to generally accepted procedures. For this purpose an integrated inspection data management system module provides standardized, interactively operated evaluation functions. The key inspection results are transmitted as feedback in respect to the as-is condition of the component. Subsequently, all further life evaluations of the associated

  14. Characteristics and possibilities of software tool for metal-oxide surge arresters selection

    Directory of Open Access Journals (Sweden)

    Đorđević Dragan

    2012-01-01

    Full Text Available This paper presents a procedure for the selection of metal-oxide surge arresters based on the instructions given in the Siemens and ABB catalogues, respecting their differences and the characteristics and possibilities of the software tool. The software tool was developed during the preparation of a Master's thesis titled, 'Automation of Metal-Oxide Surge Arresters Selection'. An example is presented of the selection of metal-oxide surge arresters using the developed software tool.

  15. Free and Open Source Software for land degradation vulnerability assessment

    Science.gov (United States)

    Imbrenda, Vito; Calamita, Giuseppe; Coluzzi, Rosa; D'Emilio, Mariagrazia; Lanfredi, Maria Teresa; Perrone, Angela; Ragosta, Maria; Simoniello, Tiziana

    2013-04-01

    Nowadays the role of FOSS software in scientific research is becoming increasingly important. Besides the important issues of reduced costs for licences, legality and security there are many other reasons that make FOSS software attractive. Firstly, making the code opened is a warranty of quality permitting to thousands of developers around the world to check the code and fix bugs rather than rely on vendors claims. FOSS communities are usually enthusiastic about helping other users for solving problems and expand or customize software (flexibility). Most important for this study, the interoperability allows to combine the user-friendly QGIS with the powerful GRASS-GIS and the richness of statistical methods of R in order to process remote sensing data and to perform geo-statistical analysis in one only environment. This study is focused on the land degradation (i.e. the reduction in the capacity of the land to provide ecosystem goods and services and assure its functions) and in particular on the estimation of the vulnerability levels in order to suggest appropriate policy actions to reduce/halt land degradation impacts, using the above mentioned software. The area investigated is the Basilicata Region (Southern Italy) where large natural areas are mixed with anthropized areas. To identify different levels of vulnerability we adopted the Environmentally Sensitive Areas (ESAs) model, based on the combination of indicators related to soil, climate, vegetation and anthropic stress. Such indicators were estimated by using the following data-sources: - Basilicata Region Geoportal to assess soil vulnerability; - DESERTNET2 project to evaluate potential vegetation vulnerability and climate vulnerability; - NDVI-MODIS satellite time series (2000-2010) with 250m resolution, available as 16-day composite from the NASA LP DAAC to characterize the dynamic component of vegetation; - Agricultural Census data 2010, Corine Land Cover 2006 and morphological information to assess

  16. A Stigmergy Approach for Open Source Software Developer Community Simulation

    Energy Technology Data Exchange (ETDEWEB)

    Cui, Xiaohui [ORNL; Beaver, Justin M [ORNL; Potok, Thomas E [ORNL; Pullum, Laura L [ORNL; Treadwell, Jim N [ORNL

    2009-01-01

    The stigmergy collaboration approach provides a hypothesized explanation about how online groups work together. In this research, we presented a stigmergy approach for building an agent based open source software (OSS) developer community collaboration simulation. We used group of actors who collaborate on OSS projects as our frame of reference and investigated how the choices actors make in contribution their work on the projects determinate the global status of the whole OSS projects. In our simulation, the forum posts and project codes served as the digital pheromone and the modified Pierre-Paul Grasse pheromone model is used for computing developer agent behaviors selection probability.

  17. A proposed metamodel for the implementation of object oriented software through the automatic generation of source code

    Directory of Open Access Journals (Sweden)

    CARVALHO, J. S. C.

    2008-12-01

    Full Text Available During the development of software one of the most visible risks and perhaps the biggest implementation obstacle relates to the time management. All delivery deadlines software versions must be followed, but it is not always possible, sometimes due to delay in coding. This paper presents a metamodel for software implementation, which will rise to a development tool for automatic generation of source code, in order to make any development pattern transparent to the programmer, significantly reducing the time spent in coding artifacts that make up the software.

  18. Methods and tools used at the IPSN for the safety assessment of critical software

    International Nuclear Information System (INIS)

    Regnier, P.; Henry, J.Y.

    1998-01-01

    A significant feature of EDF's latest 1400MWe ''N4'' generation of pressurized water reactor (PWR) is the extensive use of computerized instrumentation and control, including a fully digital system for the reactor protection function. For the safety assessment of the software driving the operation of this digital reactor protection called SPIN, IPSN has developed and implemented a set of methods and tools. Using the lessons learned from this experience, IPSN has worked at improving those methods and tools, mainly trying to make them more automatic to use, and has participated in an international assessment exercise to test some other methods and tools, either new products on the market or self-developed products. As a result of these works, this paper presents an up to date overview of the IPSN methods and tools used for the assessment of safety critical software. This assessment, which consists of an analysis of all the documentation associated with the technical specifications and of a representative set of functions, is usually carried out in five steps: (1) critical examination of the documents, (2) evaluation of the quality of the code, (3) determination of the critical software components, (4) development of test cases and choice of testing strategy, (5) dynamic analysis (consistency and robustness). This paper also presents methods and tools developed or implemented by IPSN in order to: evaluate the completeness and consistency of specification and design documents written in natural language; build a model and simulate specification or design items; evaluate the quality of the source code; carry out FMEA analysis; run the binary code and perform tests (CLAIRE); perform random or mutational tests. (author)

  19. MAPIT: A new software tool to assist in the transition from conceptual model to numerical simulation models

    International Nuclear Information System (INIS)

    Canales, T.W.; Grant, C.W.

    1996-01-01

    MapIt is a new software tool developed at Lawrence Livermore National Laboratory to assist ground water remediation professionals in generating numerical simulation models from a variety of physical and chemical data sources and the corresponding 1, 2, and 3 dimensional conceptual models that emerge from analysis of such data

  20. Source Code Vulnerabilities in IoT Software Systems

    Directory of Open Access Journals (Sweden)

    Saleh Mohamed Alnaeli

    2017-08-01

    Full Text Available An empirical study that examines the usage of known vulnerable statements in software systems developed in C/C++ and used for IoT is presented. The study is conducted on 18 open source systems comprised of millions of lines of code and containing thousands of files. Static analysis methods are applied to each system to determine the number of unsafe commands (e.g., strcpy, strcmp, and strlen that are well-known among research communities to cause potential risks and security concerns, thereby decreasing a system’s robustness and quality. These unsafe statements are banned by many companies (e.g., Microsoft. The use of these commands should be avoided from the start when writing code and should be removed from legacy code over time as recommended by new C/C++ language standards. Each system is analyzed and the distribution of the known unsafe commands is presented. Historical trends in the usage of the unsafe commands of 7 of the systems are presented to show how the studied systems evolved over time with respect to the vulnerable code. The results show that the most prevalent unsafe command used for most systems is memcpy, followed by strlen. These results can be used to help train software developers on secure coding practices so that they can write higher quality software systems.

  1. Muticriteria decision making model for chosing between open source and non-open source software

    Directory of Open Access Journals (Sweden)

    Edmilson Alves de Moraes

    2008-09-01

    Full Text Available This article proposes the use of a multicriterio method for supporting decision on a problem where the intent is to chose for software given the options of open source and not-open source. The study shows how a method for decison making can be used to provide problem structuration and simplify the decision maker job. The method Analytic Hierarchy Process-AHP is described step-by-step and its benefits and flaws are discussed. Followin the theoretical discussion, a muliple case study is presented, where two companies are to use the decison making method. The analysis was supported by Expert Choice, a software developed based on AHP framework.

  2. Systems and software variability management concepts, tools and experiences

    CERN Document Server

    Capilla, Rafael; Kang, Kyo-Chul

    2013-01-01

    The success of product line engineering techniques in the last 15 years has popularized the use of software variability as a key modeling approach for describing the commonality and variability of systems at all stages of the software lifecycle. Software product lines enable a family of products to share a common core platform, while allowing for product specific functionality being built on top of the platform. Many companies have exploited the concept of software product lines to increase the resources that focus on highly differentiating functionality and thus improve their competitiveness

  3. Open Source software and social networks: Disruptive alternatives for medical imaging

    International Nuclear Information System (INIS)

    Ratib, Osman; Rosset, Antoine; Heuberger, Joris

    2011-01-01

    In recent decades several major changes in computer and communication technology have pushed the limits of imaging informatics and PACS beyond the traditional system architecture providing new perspectives and innovative approach to a traditionally conservative medical community. Disruptive technologies such as the world-wide-web, wireless networking, Open Source software and recent emergence of cyber communities and social networks have imposed an accelerated pace and major quantum leaps in the progress of computer and technology infrastructure applicable to medical imaging applications. Methods: This paper reviews the impact and potential benefits of two major trends in consumer market software development and how they will influence the future of medical imaging informatics. Open Source software is emerging as an attractive and cost effective alternative to traditional commercial software developments and collaborative social networks provide a new model of communication that is better suited to the needs of the medical community. Observations: Evidence shows that successful Open Source software tools have penetrated the medical market and have proven to be more robust and cost effective than their commercial counterparts. Developed by developers that are themselves part of the user community, these tools are usually better adapted to the user's need and are more robust than traditional software programs being developed and tested by a large number of contributing users. This context allows a much faster and more appropriate development and evolution of the software platforms. Similarly, communication technology has opened up to the general public in a way that has changed the social behavior and habits adding a new dimension to the way people communicate and interact with each other. The new paradigms have also slowly penetrated the professional market and ultimately the medical community. Secure social networks allowing groups of people to easily communicate

  4. Open Source software and social networks: Disruptive alternatives for medical imaging

    Energy Technology Data Exchange (ETDEWEB)

    Ratib, Osman, E-mail: osman.ratib@hcuge.ch [Department of Medical Imaging and Information Sciences, University Hospital of Geneva, 24, rue Micheli-du-Crest, 1205 Geneva (Switzerland); Rosset, Antoine; Heuberger, Joris [Department of Medical Imaging and Information Sciences, University Hospital of Geneva, 24, rue Micheli-du-Crest, 1205 Geneva (Switzerland)

    2011-05-15

    In recent decades several major changes in computer and communication technology have pushed the limits of imaging informatics and PACS beyond the traditional system architecture providing new perspectives and innovative approach to a traditionally conservative medical community. Disruptive technologies such as the world-wide-web, wireless networking, Open Source software and recent emergence of cyber communities and social networks have imposed an accelerated pace and major quantum leaps in the progress of computer and technology infrastructure applicable to medical imaging applications. Methods: This paper reviews the impact and potential benefits of two major trends in consumer market software development and how they will influence the future of medical imaging informatics. Open Source software is emerging as an attractive and cost effective alternative to traditional commercial software developments and collaborative social networks provide a new model of communication that is better suited to the needs of the medical community. Observations: Evidence shows that successful Open Source software tools have penetrated the medical market and have proven to be more robust and cost effective than their commercial counterparts. Developed by developers that are themselves part of the user community, these tools are usually better adapted to the user's need and are more robust than traditional software programs being developed and tested by a large number of contributing users. This context allows a much faster and more appropriate development and evolution of the software platforms. Similarly, communication technology has opened up to the general public in a way that has changed the social behavior and habits adding a new dimension to the way people communicate and interact with each other. The new paradigms have also slowly penetrated the professional market and ultimately the medical community. Secure social networks allowing groups of people to easily

  5. Open Source software and social networks: disruptive alternatives for medical imaging.

    Science.gov (United States)

    Ratib, Osman; Rosset, Antoine; Heuberger, Joris

    2011-05-01

    In recent decades several major changes in computer and communication technology have pushed the limits of imaging informatics and PACS beyond the traditional system architecture providing new perspectives and innovative approach to a traditionally conservative medical community. Disruptive technologies such as the world-wide-web, wireless networking, Open Source software and recent emergence of cyber communities and social networks have imposed an accelerated pace and major quantum leaps in the progress of computer and technology infrastructure applicable to medical imaging applications. This paper reviews the impact and potential benefits of two major trends in consumer market software development and how they will influence the future of medical imaging informatics. Open Source software is emerging as an attractive and cost effective alternative to traditional commercial software developments and collaborative social networks provide a new model of communication that is better suited to the needs of the medical community. Evidence shows that successful Open Source software tools have penetrated the medical market and have proven to be more robust and cost effective than their commercial counterparts. Developed by developers that are themselves part of the user community, these tools are usually better adapted to the user's need and are more robust than traditional software programs being developed and tested by a large number of contributing users. This context allows a much faster and more appropriate development and evolution of the software platforms. Similarly, communication technology has opened up to the general public in a way that has changed the social behavior and habits adding a new dimension to the way people communicate and interact with each other. The new paradigms have also slowly penetrated the professional market and ultimately the medical community. Secure social networks allowing groups of people to easily communicate and exchange information

  6. CERN Web Application Detection. Refactoring and release as open source software

    CERN Document Server

    Lizonczyk, Piotr

    2015-01-01

    This paper covers my work during my assignment as participant of CERN Summer Students 2015 programme. The project was aimed at refactoring and publication of the Web Application Detection tool, which was developed at CERN and priorly used internally by the Computer Security team. The range of tasks performed include initial refactoring of code, which was developed like a script rather than a Python package, through extracting components that were not specific to CERN usage, the subsequent final release of the source code on GitHub and the integration with third-party software i.e. the w3af tool. Ultimately, Web Application Detection software received positive responses, being downloaded ca. 1500 times at the time of writing this report.

  7. Open Source Seismic Software in NOAA's Next Generation Tsunami Warning System

    Science.gov (United States)

    Hellman, S. B.; Baker, B. I.; Hagerty, M. T.; Leifer, J. M.; Lisowski, S.; Thies, D. A.; Donnelly, B. K.; Griffith, F. P.

    2014-12-01

    The Tsunami Information technology Modernization (TIM) is a project spearheaded by National Oceanic and Atmospheric Administration to update the United States' Tsunami Warning System software currently employed at the Pacific Tsunami Warning Center (Eva Beach, Hawaii) and the National Tsunami Warning Center (Palmer, Alaska). This entirely open source software project will integrate various seismic processing utilities with the National Weather Service Weather Forecast Office's core software, AWIPS2. For the real-time and near real-time seismic processing aspect of this project, NOAA has elected to integrate the open source portions of GFZ's SeisComP 3 (SC3) processing system into AWIPS2. To provide for better tsunami threat assessments we are developing open source tools for magnitude estimations (e.g., moment magnitude, energy magnitude, surface wave magnitude), detection of slow earthquakes with the Theta discriminant, moment tensor inversions (e.g. W-phase and teleseismic body waves), finite fault inversions, and array processing. With our reliance on common data formats such as QuakeML and seismic community standard messaging systems, all new facilities introduced into AWIPS2 and SC3 will be available as stand-alone tools or could be easily integrated into other real time seismic monitoring systems such as Earthworm, Antelope, etc. Additionally, we have developed a template based design paradigm so that the developer or scientist can efficiently create upgrades, replacements, and/or new metrics to the seismic data processing with only a cursory knowledge of the underlying SC3.

  8. OpenTURNS, an open source uncertainty engineering software

    International Nuclear Information System (INIS)

    Popelin, A.L.; Dufoy, A.

    2013-01-01

    The needs to assess robust performances for complex systems have lead to the emergence of a new industrial simulation challenge: to take into account uncertainties when dealing with complex numerical simulation frameworks. EDF has taken part in the development of an Open Source software platform dedicated to uncertainty propagation by probabilistic methods, named OpenTURNS for Open source Treatment of Uncertainty, Risk and Statistics. OpenTURNS includes a large variety of qualified algorithms in order to manage uncertainties in industrial studies, from the uncertainty quantification step (with possibilities to model stochastic dependence thanks to the copula theory and stochastic processes), to the uncertainty propagation step (with some innovative simulation algorithms as the ziggurat method for normal variables) and the sensitivity analysis one (with some sensitivity index based on the evaluation of means conditioned to the realization of a particular event). It also enables to build some response surfaces that can include the stochastic modeling (with the chaos polynomial method for example). Generic wrappers to link OpenTURNS to the modeling software are proposed. At last, OpenTURNS is largely documented to provide rules to help use and contribution

  9. New software tool for dynamic radiological characterisation and monitoring in nuclear sites

    International Nuclear Information System (INIS)

    Szoeke, Istvan; Louka, Michael N.; Mark, Niels K.; Bryntesen, Tom R.; Bratteli, Joachim; Edvardsen, Svein T.; Gustavsen, Morten A.; Toppe, Aleksander L.; Johnsen, Terje; Rindahl, Grete

    2012-01-01

    The Halden Reactor Project (HRP) is a jointly sponsored international cooperation, under the aegis of the Organisation for Economic Co-operation and Development - Nuclear Energy Agency. Extensive and valuable guidance and tools, connected to safe and reliable operation of nuclear facilities, has been elaborated throughout the years within the frame of this programme. The HRP has particularly high level results in virtual-reality based tools for real-time areal and personal monitoring. The techniques, developed earlier, are now being supplemented to enhance the planning and monitoring capabilities, and support general radiological characterisation connected to nuclear sites and facilities. Due to the complexity and abundance of the input information required, software tools, dedicated to the radiological characterization of contaminated materials, buildings, land and groundwater, are applied to review, evaluate and visualize the data. Characterisation of the radiation situation in a realistic environment can be very complex, and efficient visualisation of the data to the user is not straight forward. The monitoring and planning tools elaborated in the frame of the HRP feature very sophisticated three-dimensional (3D) high definition visualisation and user interfaces to promote easy interpretation of the input data. The visualisation tools permit dynamic visualisation of radiation fields in virtual or augmented reality by various techniques and real-time personal monitoring of humanoid models. In addition new techniques are being elaborated to visualise the 3D distribution of activities in structures and materials. The dosimetric algorithms, feeding information to the visualisation and user interface of these planning tools, include deterministic radiation transport techniques suitable for fast photon dose estimates, in case physical and radio- and spectrometric characteristics of the gamma sources are known. The basic deterministic model, implemented in earlier

  10. SAMPA: A free software tool for skin and membrane permeation data analysis.

    Science.gov (United States)

    Bezrouk, Aleš; Fiala, Zdeněk; Kotingová, Lenka; Krulichová, Iva Selke; Kopečná, Monika; Vávrová, Kateřina

    2017-10-01

    Skin and membrane permeation experiments comprise an important step in the development of a transdermal or topical formulation or toxicological risk assessment. The standard method for analyzing these data relies on the linear part of a permeation profile. However, it is difficult to objectively determine when the profile becomes linear, or the experiment duration may be insufficient to reach a maximum or steady state. Here, we present a software tool for Skin And Membrane Permeation data Analysis, SAMPA, that is easy to use and overcomes several of these difficulties. The SAMPA method and software have been validated on in vitro and in vivo permeation data on human, pig and rat skin and model stratum corneum lipid membranes using compounds that range from highly lipophilic polycyclic aromatic hydrocarbons to highly hydrophilic antiviral drug, with and without two permeation enhancers. The SAMPA performance was compared with the standard method using a linear part of the permeation profile and a complex mathematical model. SAMPA is a user-friendly, open-source software tool for analyzing the data obtained from skin and membrane permeation experiments. It runs on a Microsoft Windows platform and is freely available as a Supporting file to this article. Copyright © 2017 Elsevier Ltd. All rights reserved.

  11. Methodology and Toolset for Model Verification, Hardware/Software co-simulation, Performance Optimisation and Customisable Source-code generation

    DEFF Research Database (Denmark)

    Berger, Michael Stübert; Soler, José; Yu, Hao

    2013-01-01

    The MODUS project aims to provide a pragmatic and viable solution that will allow SMEs to substantially improve their positioning in the embedded-systems development market. The MODUS tool will provide a model verification and Hardware/Software co-simulation tool (TRIAL) and a performance...... optimisation and customisable source-code generation tool (TUNE). The concept is depicted in automated modelling and optimisation of embedded-systems development. The tool will enable model verification by guiding the selection of existing open-source model verification engines, based on the automated analysis...

  12. Accuracy Test of Software Architecture Compliance Checking Tools : Test Instruction

    NARCIS (Netherlands)

    Prof.dr. S. Brinkkemper; Dr. Leo Pruijt; C. Köppe; J.M.E.M. van der Werf

    2015-01-01

    Author supplied: "Abstract Software Architecture Compliance Checking (SACC) is an approach to verify conformance of implemented program code to high-level models of architectural design. Static SACC focuses on the modular software architecture and on the existence of rule violating dependencies

  13. Component-based development of software language engineering tools

    NARCIS (Netherlands)

    Ssanyu, J.; Hemerik, C.

    2011-01-01

    In this paper we outline how Software Language Engineering (SLE) could benefit from Component-based Software Development (CBSD) techniques and present an architecture aimed at developing a coherent set of lightweight SLE components, fitting into a general-purpose component framework. In order to

  14. ESSCOTS for Learning: Transforming Commercial Software into Powerful Educational Tools.

    Science.gov (United States)

    McArthur, David; And Others

    1995-01-01

    Gives an overview of Educational Support Systems based on commercial off-the-shelf software (ESSCOTS), and discusses the benefits of developing such educational software. Presents results of a study that revealed the learning processes of middle and high school students who used a geographical information system. (JMV)

  15. DVS-SOFTWARE: An Effective Tool for Applying Highly Parallelized Hardware To Computational Geophysics

    Science.gov (United States)

    Herrera, I.; Herrera, G. S.

    2015-12-01

    Most geophysical systems are macroscopic physical systems. The behavior prediction of such systems is carried out by means of computational models whose basic models are partial differential equations (PDEs) [1]. Due to the enormous size of the discretized version of such PDEs it is necessary to apply highly parallelized super-computers. For them, at present, the most efficient software is based on non-overlapping domain decomposition methods (DDM). However, a limiting feature of the present state-of-the-art techniques is due to the kind of discretizations used in them. Recently, I. Herrera and co-workers using 'non-overlapping discretizations' have produced the DVS-Software which overcomes this limitation [2]. The DVS-software can be applied to a great variety of geophysical problems and achieves very high parallel efficiencies (90%, or so [3]). It is therefore very suitable for effectively applying the most advanced parallel supercomputers available at present. In a parallel talk, in this AGU Fall Meeting, Graciela Herrera Z. will present how this software is being applied to advance MOD-FLOW. Key Words: Parallel Software for Geophysics, High Performance Computing, HPC, Parallel Computing, Domain Decomposition Methods (DDM)REFERENCES [1]. Herrera Ismael and George F. Pinder, Mathematical Modelling in Science and Engineering: An axiomatic approach", John Wiley, 243p., 2012. [2]. Herrera, I., de la Cruz L.M. and Rosas-Medina A. "Non Overlapping Discretization Methods for Partial, Differential Equations". NUMER METH PART D E, 30: 1427-1454, 2014, DOI 10.1002/num 21852. (Open source) [3]. Herrera, I., & Contreras Iván "An Innovative Tool for Effectively Applying Highly Parallelized Software To Problems of Elasticity". Geofísica Internacional, 2015 (In press)

  16. How Open Source Has Changed the Software Industry: Perspectives from Open Source Entrepreneurs

    Directory of Open Access Journals (Sweden)

    Risto Rajala

    2012-01-01

    Full Text Available The emergence of F/LOSS (free/libre open source software has triggered several changes in the software industry. F/LOSS has been cited as an archetypal form of open innovation; it consists of the convergence and collaboration of like-minded parties. An increasing number of software firms have taken upon this approach to link outsiders into their service development and product design. Also, software firms have been increasingly grounded their business models on user-centric and service-oriented operations. This article describes a study that investigates these changes from the perspective of F/LOSS entrepreneurs. The findings are summarized into four issues that are critical in managing an F/LOSS business: i dealing with organizational changes in the innovation process; ii mastering user involvement; iii successfully using resources; and iv designing revenue models.

  17. BioSig: the free and open source software library for biomedical signal processing.

    Science.gov (United States)

    Vidaurre, Carmen; Sander, Tilmann H; Schlögl, Alois

    2011-01-01

    BioSig is an open source software library for biomedical signal processing. The aim of the BioSig project is to foster research in biomedical signal processing by providing free and open source software tools for many different application areas. Some of the areas where BioSig can be employed are neuroinformatics, brain-computer interfaces, neurophysiology, psychology, cardiovascular systems, and sleep research. Moreover, the analysis of biosignals such as the electroencephalogram (EEG), electrocorticogram (ECoG), electrocardiogram (ECG), electrooculogram (EOG), electromyogram (EMG), or respiration signals is a very relevant element of the BioSig project. Specifically, BioSig provides solutions for data acquisition, artifact processing, quality control, feature extraction, classification, modeling, and data visualization, to name a few. In this paper, we highlight several methods to help students and researchers to work more efficiently with biomedical signals.

  18. 76 FR 75875 - Defense Federal Acquisition Regulation Supplement; Open Source Software Public Meeting

    Science.gov (United States)

    2011-12-05

    ... Regulation Supplement; Open Source Software Public Meeting AGENCY: Defense Acquisition Regulations System... initiate a dialogue with industry regarding the use of open source software in DoD contracts. DATES: Public... to the risks to the contractors and the Government associated with using open source software on DoD...

  19. Open Source Software Success Model for Iran: End-User Satisfaction Viewpoint

    Directory of Open Access Journals (Sweden)

    Ali Niknafs

    2012-03-01

    Full Text Available The open source software development is notable option for software companies. Recent years, many advantages of this software type are cause of move to that in Iran. National security and international restrictions problems and also software and services costs and more other problems intensified importance of use of this software. Users and their viewpoints are the critical success factor in the software plans. But there is not an appropriate model for open source software case in Iran. This research tried to develop a measuring open source software success model for Iran. By use of data gathered from open source users and online survey the model was tested. The results showed that components by positive effect on open source success were user satisfaction, open source community services quality, open source quality, copyright and security.

  20. Software Support of Modelling using Ergonomic Tools in Engineering

    Directory of Open Access Journals (Sweden)

    Darina Dupláková

    2017-08-01

    Full Text Available One of the preconditions for correct development of industrial production is continuous interconnecting of virtual reality and real world by computer software. Computer software are used for product modelling, creation of technical documentation, scheduling, management and optimization of manufacturing processes, and efficiency increase of human work in manufacturing plants. This article describes the frequent used ergonomic software which helping to increase of human work by error rate reducing, risks factors of working environment, injury in workplaces and elimination of arising occupational diseases. They are categorized in the field of micro ergonomics and they are applicable at the manufacturing level with flexible approach in solving of established problems.

  1. The SCEC Broadband Platform: Open-Source Software for Strong Ground Motion Simulation and Validation

    Science.gov (United States)

    Silva, F.; Goulet, C. A.; Maechling, P. J.; Callaghan, S.; Jordan, T. H.

    2016-12-01

    The Southern California Earthquake Center (SCEC) Broadband Platform (BBP) is a carefully integrated collection of open-source scientific software programs that can simulate broadband (0-100 Hz) ground motions for earthquakes at regional scales. The BBP can run earthquake rupture and wave propagation modeling software to simulate ground motions for well-observed historical earthquakes and to quantify how well the simulated broadband seismograms match the observed seismograms. The BBP can also run simulations for hypothetical earthquakes. In this case, users input an earthquake location and magnitude description, a list of station locations, and a 1D velocity model for the region of interest, and the BBP software then calculates ground motions for the specified stations. The BBP scientific software modules implement kinematic rupture generation, low- and high-frequency seismogram synthesis using wave propagation through 1D layered velocity structures, several ground motion intensity measure calculations, and various ground motion goodness-of-fit tools. These modules are integrated into a software system that provides user-defined, repeatable, calculation of ground-motion seismograms, using multiple alternative ground motion simulation methods, and software utilities to generate tables, plots, and maps. The BBP has been developed over the last five years in a collaborative project involving geoscientists, earthquake engineers, graduate students, and SCEC scientific software developers. The SCEC BBP software released in 2016 can be compiled and run on recent Linux and Mac OS X systems with GNU compilers. It includes five simulation methods, seven simulation regions covering California, Japan, and Eastern North America, and the ability to compare simulation results against empirical ground motion models (aka GMPEs). The latest version includes updated ground motion simulation methods, a suite of new validation metrics and a simplified command line user interface.

  2. Possibilities for using software tools in the process of secuirty design

    Directory of Open Access Journals (Sweden)

    Ladislav Mariš

    2013-07-01

    Full Text Available The authors deal with the use of software support the process of security design. The article proposes the theoretical basis of the implementation of software tools to design activities. Based on the selected design standards of electrical safety systems application design solutions, especially in drawing documentation. The article should serve the needs of the project team members in order to use selected software tools and a subsequent increase in the degree of automation of design activities.

  3. Simulation and visualization tool design for robot software

    NARCIS (Netherlands)

    Lu, Zhou; Ran, Tjalling; Broenink, Johannes F.; Chalmers, K.; Pedersen, J.B.

    2016-01-01

    Modern embedded systems are designed for multiple and increasingly demanding tasks. Complex concurrent software is required by multi-task automated service robotics for implementing their challenging (control) algorithms. TERRA is a communicating Sequential Processes (CSP) algebra-based Eclipse

  4. Software Tools for Fault Management Technologies, Phase II

    Data.gov (United States)

    National Aeronautics and Space Administration — Fault Management (FM) is a key requirement for safety, efficient onboard and ground operations, maintenance, and repair. QSI's TEAMS Software suite is a leading...

  5. Coordination Implications of Software Coupling in Open Source Projects

    NARCIS (Netherlands)

    Amrit, Chintan Amrit; van Hillegersberg, Jos; Ågerfalk, Pär

    2010-01-01

    The effect of software coupling on the quality of software has been studied quite widely since the seminal paper on software modularity by Parnas [1]. However, the effect of the increase in software coupling on the coordination of the developers has not been researched as much. In commercial

  6. Moodle: How we built a community around open source software

    CERN Multimedia

    CERN. Geneva

    2010-01-01

    Martin will talk about the continuing growth of Moodle from an idea into a worldwide project helping millions of people. He'll talk about the factors that have contributed to Moodle's current success, some that were integrated from the beginning of the project and some that were learned along the way.About the speakerMartin Dougiamas is best known as the founder of Moodle, the popular free course management system used by millions of teachers around the world.As the executive director of Moodle Pty Ltd in Perth, Western Australia, he leads the team of software developers at the heart of the Moodle project and the global network of 54 Moodle Partner service companies that help provide funding for this independent open source software project.Martin has a mixed academic background with post-graduate degrees in Computer Science and Education, and continues to focus on researching how educators approach internet-based education. His major goal for the future is to improve the quality of education by encouraging ...

  7. Tuning COCOMO-II for Software Process Improvement: A Tool Based Approach

    Directory of Open Access Journals (Sweden)

    SYEDA UMEMA HANI

    2016-10-01

    Full Text Available In order to compete in the international software development market the software organizations have to adopt internationally accepted software practices i.e. standard like ISO (International Standard Organization or CMMI (Capability Maturity Model Integration in spite of having scarce resources and tools. The aim of this study is to develop a tool which could be used to present an actual picture of Software Process Improvement benefits in front of the software development companies. However, there are few tools available to assist in making predictions, they are too expensive and could not cover dataset that reflect the cultural behavior of organizations for software development in developing countries. In extension to our previously done research reported elsewhere for Pakistani software development organizations which has quantified benefits of SDPI (Software Development Process Improvement, this research has used sixty-two datasets from three different software development organizations against the set of metrics used in COCOMO-II (Constructive Cost Model 2000. It derived a verifiable equation for calculating ISF (Ideal Scale Factor and tuned the COCOMO-II model to bring prediction capability for SDPI (benefit measurement classes such as ESCP (Effort, Schedule, Cost, and Productivity. This research has contributed towards software industry by giving a reliable and low-cost mechanism for generating prediction models with high prediction accuracy. Hopefully, this study will help software organizations to use this tool not only to predict ESCP but also to predict an exact impact of SDPI.

  8. Mahotas: Open source software for scriptable computer vision

    Directory of Open Access Journals (Sweden)

    Luis Pedro Coelho

    2013-07-01

    Full Text Available Mahotas is a computer vision library for Python. It contains traditional image processing functionality such as filtering and morphological operations as well as more modern computer vision functions for feature computation, including interest point detection and local descriptors. The interface is in Python, a dynamic programming language, which is appropriate for fast development, but the algorithms are implemented in C++ and are tuned for speed. The library is designed to fit in with the scientific software ecosystem in this language and can leverage the existing infrastructure developed in that language. Mahotas is released under a liberal open source license (MIT License and is available from http://github.com/luispedro/mahotas and from the Python Package Index (http://pypi.python.org/pypi/mahotas. Tutorials and full API documentation are available online at http://mahotas.readthedocs.org/.

  9. OsiriX: an open-source software for navigating in multidimensional DICOM images.

    Science.gov (United States)

    Rosset, Antoine; Spadola, Luca; Ratib, Osman

    2004-09-01

    A multidimensional image navigation and display software was designed for display and interpretation of large sets of multidimensional and multimodality images such as combined PET-CT studies. The software is developed in Objective-C on a Macintosh platform under the MacOS X operating system using the GNUstep development environment. It also benefits from the extremely fast and optimized 3D graphic capabilities of the OpenGL graphic standard widely used for computer games optimized for taking advantage of any hardware graphic accelerator boards available. In the design of the software special attention was given to adapt the user interface to the specific and complex tasks of navigating through large sets of image data. An interactive jog-wheel device widely used in the video and movie industry was implemented to allow users to navigate in the different dimensions of an image set much faster than with a traditional mouse or on-screen cursors and sliders. The program can easily be adapted for very specific tasks that require a limited number of functions, by adding and removing tools from the program's toolbar and avoiding an overwhelming number of unnecessary tools and functions. The processing and image rendering tools of the software are based on the open-source libraries ITK and VTK. This ensures that all new developments in image processing that could emerge from other academic institutions using these libraries can be directly ported to the OsiriX program. OsiriX is provided free of charge under the GNU open-source licensing agreement at http://homepage.mac.com/rossetantoine/osirix.

  10. Open-source Software for Exoplanet Atmospheric Modeling

    Science.gov (United States)

    Cubillos, Patricio; Blecic, Jasmina; Harrington, Joseph

    2018-01-01

    I will present a suite of self-standing open-source tools to model and retrieve exoplanet spectra implemented for Python. These include: (1) a Bayesian-statistical package to run Levenberg-Marquardt optimization and Markov-chain Monte Carlo posterior sampling, (2) a package to compress line-transition data from HITRAN or Exomol without loss of information, (3) a package to compute partition functions for HITRAN molecules, (4) a package to compute collision-induced absorption, and (5) a package to produce radiative-transfer spectra of transit and eclipse exoplanet observations and atmospheric retrievals.

  11. Inequalities in Open Source Software Development: Analysis of Contributor's Commits in Apache Software Foundation Projects.

    Science.gov (United States)

    Chełkowski, Tadeusz; Gloor, Peter; Jemielniak, Dariusz

    2016-01-01

    While researchers are becoming increasingly interested in studying OSS phenomenon, there is still a small number of studies analyzing larger samples of projects investigating the structure of activities among OSS developers. The significant amount of information that has been gathered in the publicly available open-source software repositories and mailing-list archives offers an opportunity to analyze projects structures and participant involvement. In this article, using on commits data from 263 Apache projects repositories (nearly all), we show that although OSS development is often described as collaborative, but it in fact predominantly relies on radically solitary input and individual, non-collaborative contributions. We also show, in the first published study of this magnitude, that the engagement of contributors is based on a power-law distribution.

  12. Laser scanner data processing and 3D modeling using a free and open source software

    International Nuclear Information System (INIS)

    Gabriele, Fatuzzo; Michele, Mangiameli; Giuseppe, Mussumeci; Salvatore, Zito

    2015-01-01

    The laser scanning is a technology that allows in a short time to run the relief geometric objects with a high level of detail and completeness, based on the signal emitted by the laser and the corresponding return signal. When the incident laser radiation hits the object to detect, then the radiation is reflected. The purpose is to build a three-dimensional digital model that allows to reconstruct the reality of the object and to conduct studies regarding the design, restoration and/or conservation. When the laser scanner is equipped with a digital camera, the result of the measurement process is a set of points in XYZ coordinates showing a high density and accuracy with radiometric and RGB tones. In this case, the set of measured points is called “point cloud” and allows the reconstruction of the Digital Surface Model. Even the post-processing is usually performed by closed source software, which is characterized by Copyright restricting the free use, free and open source software can increase the performance by far. Indeed, this latter can be freely used providing the possibility to display and even custom the source code. The experience started at the Faculty of Engineering in Catania is aimed at finding a valuable free and open source tool, MeshLab (Italian Software for data processing), to be compared with a reference closed source software for data processing, i.e. RapidForm. In this work, we compare the results obtained with MeshLab and Rapidform through the planning of the survey and the acquisition of the point cloud of a morphologically complex statue

  13. Laser scanner data processing and 3D modeling using a free and open source software

    Energy Technology Data Exchange (ETDEWEB)

    Gabriele, Fatuzzo [Dept. of Industrial and Mechanical Engineering, University of Catania (Italy); Michele, Mangiameli, E-mail: amichele.mangiameli@dica.unict.it; Giuseppe, Mussumeci; Salvatore, Zito [Dept. of Civil Engineering and Architecture, University of Catania (Italy)

    2015-03-10

    The laser scanning is a technology that allows in a short time to run the relief geometric objects with a high level of detail and completeness, based on the signal emitted by the laser and the corresponding return signal. When the incident laser radiation hits the object to detect, then the radiation is reflected. The purpose is to build a three-dimensional digital model that allows to reconstruct the reality of the object and to conduct studies regarding the design, restoration and/or conservation. When the laser scanner is equipped with a digital camera, the result of the measurement process is a set of points in XYZ coordinates showing a high density and accuracy with radiometric and RGB tones. In this case, the set of measured points is called “point cloud” and allows the reconstruction of the Digital Surface Model. Even the post-processing is usually performed by closed source software, which is characterized by Copyright restricting the free use, free and open source software can increase the performance by far. Indeed, this latter can be freely used providing the possibility to display and even custom the source code. The experience started at the Faculty of Engineering in Catania is aimed at finding a valuable free and open source tool, MeshLab (Italian Software for data processing), to be compared with a reference closed source software for data processing, i.e. RapidForm. In this work, we compare the results obtained with MeshLab and Rapidform through the planning of the survey and the acquisition of the point cloud of a morphologically complex statue.

  14. Fluctuating Finite Element Analysis (FFEA: A continuum mechanics software tool for mesoscale simulation of biomolecules.

    Directory of Open Access Journals (Sweden)

    Albert Solernou

    2018-03-01

    Full Text Available Fluctuating Finite Element Analysis (FFEA is a software package designed to perform continuum mechanics simulations of proteins and other globular macromolecules. It combines conventional finite element methods with stochastic thermal noise, and is appropriate for simulations of large proteins and protein complexes at the mesoscale (length-scales in the range of 5 nm to 1 μm, where there is currently a paucity of modelling tools. It requires 3D volumetric information as input, which can be low resolution structural information such as cryo-electron tomography (cryo-ET maps or much higher resolution atomistic co-ordinates from which volumetric information can be extracted. In this article we introduce our open source software package for performing FFEA simulations which we have released under a GPLv3 license. The software package includes a C ++ implementation of FFEA, together with tools to assist the user to set up the system from Electron Microscopy Data Bank (EMDB or Protein Data Bank (PDB data files. We also provide a PyMOL plugin to perform basic visualisation and additional Python tools for the analysis of FFEA simulation trajectories. This manuscript provides a basic background to the FFEA method, describing the implementation of the core mechanical model and how intermolecular interactions and the solvent environment are included within this framework. We provide prospective FFEA users with a practical overview of how to set up an FFEA simulation with reference to our publicly available online tutorials and manuals that accompany this first release of the package.

  15. A Metric Tool for Predicting Source Code Quality from a PDL Design

    OpenAIRE

    Henry, Sallie M.; Selig, Calvin

    1987-01-01

    The software crisis has increased the demand for automated tools to assist software developers in the production of quality software. Quality metrics have given software developers a tool to measure software quality. These measurements, however, are available only after the software has been produced. Due to high cost, software managers are reluctant, to redesign and reimplement low quality software. Ideally, a life cycle which allows early measurement of software quality is a necessary ingre...

  16. Description of a project management system software tool (Sugar)

    International Nuclear Information System (INIS)

    Saito, T.

    2000-01-01

    Toshiba has developed a project management tool that can be applied to large-scale and complicated projects such as the outage of a nuclear power station. The project management tool (Sugar) which Toshiba developed is excellent in operative visibility and extendibility, and has been developed from the beginning for use in nuclear periodic-inspection project control. Here, the development circumstances of this project management tool (Sugar) and the feature are described, and an easy demonstration is provided as an example. (author)

  17. Challenges of Implementing Free and Open Source Software (FOSS): Evidence from the Indian Educational Setting

    Science.gov (United States)

    Thankachan, Briju; Moore, David Richard

    2017-01-01

    The use of Free and Open Source Software (FOSS), a subset of Information and Communication Technology (ICT), can reduce the cost of purchasing software. Despite the benefit in the initial purchase price of software, deploying software requires total cost that goes beyond the initial purchase price. Total cost is a silent issue of FOSS and can only…

  18. PTaaS: Platform for Providing Software Developing Applications and Tools as a Service

    DEFF Research Database (Denmark)

    Chauhan, Muhammad Aufeef; Babar, Muhammad Ali

    2014-01-01

    technological support for it that is not limited to one specific tools and a particular phase of software development life cycle. In this thesis, we have explored the possibility of offering software development applications and tools as services that can be acquired on demand according to the software...... with process. Information gained from the review of literature on GSD tools and processes is used to extract functional requirements for the middleware platform for provisioning of software development applications and tools as services. Finding from the review of literature on architecture solutions for cloud......Cloud computing has become an established paradigm for enabling organizations to build scalable software systems and to meet challenges of rapid demand of computing and storage resources. There has been a significant success in building cloud-enabled applications for many disciplines ranging from...

  19. Holistic Framework For Establishing Interoperability of Heterogeneous Software Development Tools

    National Research Council Canada - National Science Library

    Puett, Joseph

    2003-01-01

    ...; however, this research focuses on establishing a holistic approach over the entire development effort where unrealized synergies and dependencies between all of the tools' artifacts can be visualized...

  20. MSP-Tool: a VBA-based software tool for the analysis of multispecimen paleointensity data

    Science.gov (United States)

    Monster, Marilyn; de Groot, Lennart; Dekkers, Mark

    2015-12-01

    The multispecimen protocol (MSP) is a method to estimate the Earth's magnetic field's past strength from volcanic rocks or archeological materials. By reducing the amount of heating steps and aligning the specimens parallel to the applied field, thermochemical alteration and multi-domain effects are minimized. We present a new software tool, written for Microsoft Excel 2010 in Visual Basic for Applications (VBA), that evaluates paleointensity data acquired using this protocol. In addition to the three ratios (standard, fraction-corrected and domain-state-corrected) calculated following Dekkers and Böhnel (2006) and Fabian and Leonhardt (2010) and a number of other parameters proposed by Fabian and Leonhardt (2010), it also provides several reliability criteria. These include an alteration criterion, whether or not the linear regression intersects the y axis within the theoretically prescribed range, and two directional checks. Overprints and misalignment are detected by isolating the remaining natural remanent magnetization (NRM) and the partial thermoremanent magnetization (pTRM) gained and comparing their declinations and inclinations. The NRM remaining and pTRM gained are then used to calculate alignment-corrected multispecimen plots. Data are analyzed using bootstrap statistics. The program was tested on lava samples that were given a full TRM and that acquired their pTRMs at angles of 0, 15, 30 and 90° with respect to their NRMs. MSP-Tool adequately detected and largely corrected these artificial alignment errors.

  1. A SOFTWARE TOOL FOR EXPERIMENTAL STUDY LEAP MOTION

    OpenAIRE

    Georgi Krastev; Magdalena Andreeva

    2015-01-01

    The paper aims to present computer application that illustrates Leap Motion controller’s abilities. It is a peripheral and software for PC, which enables control by natural user interface based on gestures. The publication also describes how the controller works and its main advantages/disadvantages. Some apps using leap motion controller are discussed.

  2. Software Tools For Large Scale Interactive Hydrodynamic Modeling

    NARCIS (Netherlands)

    Donchyts, G.; Baart, F.; van Dam, A; Jagers, B; van der Pijl, S.; Piasecki, M.

    2014-01-01

    Developing easy-to-use software that combines components for simultaneous visualization, simulation and interaction is a great challenge. Mainly, because it involves a number of disciplines, like computational fluid dynamics, computer graphics, high-performance computing. One of the main

  3. Simulation software support (S3) system a software testing and debugging tool

    International Nuclear Information System (INIS)

    Burgess, D.C.; Mahjouri, F.S.

    1990-01-01

    The largest percentage of technical effort in the software development process is accounted for debugging and testing. It is not unusual for a software development organization to spend over 50% of the total project effort on testing. In the extreme, testing of human-rated software (e.g., nuclear reactor monitoring, training simulator) can cost three to five times as much as all other software engineering steps combined. The Simulation Software Support (S 3 ) System, developed by the Link-Miles Simulation Corporation is ideally suited for real-time simulation applications which involve a large database with models programmed in FORTRAN. This paper will focus on testing elements of the S 3 system. In this paper system support software utilities are provided which enable the loading and execution of modules in the development environment. These elements include the Linking/Loader (LLD) for dynamically linking program modules and loading them into memory and the interactive executive (IEXEC) for controlling the execution of the modules. Features of the Interactive Symbolic Debugger (SD) and the Real Time Executive (RTEXEC) to support the unit and integrated testing will be explored

  4. Free Open Source Software: Social Phenomenon, New Management, New Business Models

    Directory of Open Access Journals (Sweden)

    Žilvinas Jančoras

    2011-08-01

    Full Text Available In the paper assumptions of free open source software existence, development, financing and competition models are presented. The free software as a social phenomenon and the open source software as the technological and managerial innovation environment are revealed. The social and business interaction processes are analyzed.Article in Lithuanian

  5. Expanding Human Capabilities through the Adoption and Utilization of Free, Libre, and Open Source Software

    Science.gov (United States)

    Simpson, James Daniel

    2014-01-01

    Free, libre, and open source software (FLOSS) is software that is collaboratively developed. FLOSS provides end-users with the source code and the freedom to adapt or modify a piece of software to fit their needs (Deek & McHugh, 2008; Stallman, 2010). FLOSS has a 30 year history that dates to the open hacker community at the Massachusetts…

  6. High Energy Physics Forum for Computational Excellence: Working Group Reports (I. Applications Software II. Software Libraries and Tools III. Systems)

    Energy Technology Data Exchange (ETDEWEB)

    Habib, Salman [Argonne National Lab. (ANL), Argonne, IL (United States); Roser, Robert [Fermi National Accelerator Lab. (FNAL), Batavia, IL (United States); LeCompte, Tom [Argonne National Lab. (ANL), Argonne, IL (United States); Marshall, Zach [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Borgland, Anders [SLAC National Accelerator Lab., Menlo Park, CA (United States); Viren, Brett [Brookhaven National Lab. (BNL), Upton, NY (United States); Nugent, Peter [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Asai, Makato [SLAC National Accelerator Lab., Menlo Park, CA (United States); Bauerdick, Lothar [Fermi National Accelerator Lab. (FNAL), Batavia, IL (United States); Finkel, Hal [Argonne National Lab. (ANL), Argonne, IL (United States); Gottlieb, Steve [Indiana Univ., Bloomington, IN (United States); Hoeche, Stefan [SLAC National Accelerator Lab., Menlo Park, CA (United States); Sheldon, Paul [Vanderbilt Univ., Nashville, TN (United States); Vay, Jean-Luc [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Elmer, Peter [Princeton Univ., NJ (United States); Kirby, Michael [Fermi National Accelerator Lab. (FNAL), Batavia, IL (United States); Patton, Simon [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Potekhin, Maxim [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Yanny, Brian [Fermi National Accelerator Lab. (FNAL), Batavia, IL (United States); Calafiura, Paolo [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Dart, Eli [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Gutsche, Oliver [Fermi National Accelerator Lab. (FNAL), Batavia, IL (United States); Izubuchi, Taku [Brookhaven National Lab. (BNL), Upton, NY (United States); Lyon, Adam [Fermi National Accelerator Lab. (FNAL), Batavia, IL (United States); Petravick, Don [Univ. of Illinois, Urbana-Champaign, IL (United States). National Center for Supercomputing Applications (NCSA)

    2015-10-29

    Computing plays an essential role in all aspects of high energy physics. As computational technology evolves rapidly in new directions, and data throughput and volume continue to follow a steep trend-line, it is important for the HEP community to develop an effective response to a series of expected challenges. In order to help shape the desired response, the HEP Forum for Computational Excellence (HEP-FCE) initiated a roadmap planning activity with two key overlapping drivers -- 1) software effectiveness, and 2) infrastructure and expertise advancement. The HEP-FCE formed three working groups, 1) Applications Software, 2) Software Libraries and Tools, and 3) Systems (including systems software), to provide an overview of the current status of HEP computing and to present findings and opportunities for the desired HEP computational roadmap. The final versions of the reports are combined in this document, and are presented along with introductory material.

  7. High Energy Physics Forum for Computational Excellence: Working Group Reports (I. Applications Software II. Software Libraries and Tools III. Systems)

    Energy Technology Data Exchange (ETDEWEB)

    Habib, Salman [Fermi National Accelerator Lab. (FNAL), Batavia, IL (United States); Roser, Robert [Fermi National Accelerator Lab. (FNAL), Batavia, IL (United States)

    2015-10-28

    Computing plays an essential role in all aspects of high energy physics. As computational technology evolves rapidly in new directions, and data throughput and volume continue to follow a steep trend-line, it is important for the HEP community to develop an effective response to a series of expected challenges. In order to help shape the desired response, the HEP Forum for Computational Excellence (HEP-FCE) initiated a roadmap planning activity with two key overlapping drivers -- 1) software effectiveness, and 2) infrastructure and expertise advancement. The HEP-FCE formed three working groups, 1) Applications Software, 2) Software Libraries and Tools, and 3) Systems (including systems software), to provide an overview of the current status of HEP computing and to present findings and opportunities for the desired HEP computational roadmap. The final versions of the reports are combined in this document, and are presented along with introductory material.

  8. COMPUTER TOOLS OF DYNAMIC MATHEMATIC SOFTWARE AND METHODICAL PROBLEMS OF THEIR USE

    OpenAIRE

    Olena V. Semenikhina; Maryna H. Drushliak

    2014-01-01

    The article presents results of analyses of standard computer tools of dynamic mathematic software which are used in solving tasks, and tools on which the teacher can support in the teaching of mathematics. Possibility of the organization of experimental investigating of mathematical objects on the basis of these tools and the wording of new tasks on the basis of the limited number of tools, fast automated check are specified. Some methodological comments on application of computer tools and ...

  9. The Exercise: An Exercise Generator Tool for the SOURCe Project

    Science.gov (United States)

    Kakoyianni-Doa, Fryni; Tziafa, Eleni; Naskos, Athanasios

    2016-01-01

    The Exercise, an Exercise generator in the SOURCe project, is a tool that complements the properties and functionalities of the SOURCe project, which includes the search engine for the Searchable Online French-Greek parallel corpus for the UniveRsity of Cyprus (SOURCe) (Kakoyianni-Doa & Tziafa, 2013), the PENCIL (an alignment tool)…

  10. Development and validation of an open source quantification tool for DSC-MRI studies.

    Science.gov (United States)

    Gordaliza, P M; Mateos-Pérez, J M; Montesinos, P; Guzmán-de-Villoria, J A; Desco, M; Vaquero, J J

    2015-03-01

    This work presents the development of an open source tool for the quantification of dynamic susceptibility-weighted contrast-enhanced (DSC) perfusion studies. The development of this tool is motivated by the lack of open source tools implemented on open platforms to allow external developers to implement their own quantification methods easily and without the need of paying for a development license. This quantification tool was developed as a plugin for the ImageJ image analysis platform using the Java programming language. A modular approach was used in the implementation of the components, in such a way that the addition of new methods can be done without breaking any of the existing functionalities. For the validation process, images from seven patients with brain tumors were acquired and quantified with the presented tool and with a widely used clinical software package. The resulting perfusion parameters were then compared. Perfusion parameters and the corresponding parametric images were obtained. When no gamma-fitting is used, an excellent agreement with the tool used as a gold-standard was obtained (R(2)>0.8 and values are within 95% CI limits in Bland-Altman plots). An open source tool that performs quantification of perfusion studies using magnetic resonance imaging has been developed and validated using a clinical software package. It works as an ImageJ plugin and the source code has been published with an open source license. Copyright © 2015 Elsevier Ltd. All rights reserved.

  11. Life Cycle Assessment Studies of Chemical and Biochemical Processes through the new LCSoft Software-tool

    DEFF Research Database (Denmark)

    Supawanich, Perapong; Malakul, Pomthong; Gani, Rafiqul

    2015-01-01

    requirements have to be evaluated together with environmental and economic aspects. The LCSoft software-tool has been developed to perform LCA as a stand-alone tool as well as integrated with other process design tools such as process simulation, economic analysis (ECON), and sustainable process design...

  12. Training, Quality Assurance Factors, and Tools Investigation: a Work Report and Suggestions on Software Quality Assurance

    Science.gov (United States)

    Lee, Pen-Nan

    1991-01-01

    Previously, several research tasks have been conducted, some observations were obtained, and several possible suggestions have been contemplated involving software quality assurance engineering at NASA Johnson. These research tasks are briefly described. Also, a brief discussion is given on the role of software quality assurance in software engineering along with some observations and suggestions. A brief discussion on a training program for software quality assurance engineers is provided. A list of assurance factors as well as quality factors are also included. Finally, a process model which can be used for searching and collecting software quality assurance tools is presented.

  13. Software development tools for the CDF MX scanner

    Energy Technology Data Exchange (ETDEWEB)

    Stuermer, W.; Turner, K.; Littleton-Sestini, S.

    1991-11-01

    This paper discuses the design of the high level assembler and diagnostic control program developed for the MX, a high speed, custom designed computer used in the CDF data acquisition system at Fermilab. These programs provide a friendly productive environment for the development of software on the MX. Details of their implementation and special features, and some of the lessons learned during their development are included.

  14. Software development tools for the CDF MX scanner

    International Nuclear Information System (INIS)

    Stuermer, W.; Turner, K.; Littleton-Sestini, S.

    1991-11-01

    This paper discuses the design of the high level assembler and diagnostic control program developed for the MX, a high speed, custom designed computer used in the CDF data acquisition system at Fermilab. These programs provide a friendly productive environment for the development of software on the MX. Details of their implementation and special features, and some of the lessons learned during their development are included

  15. STARS 2.0: 2nd-generation open-source archiving and query software

    Science.gov (United States)

    Winegar, Tom

    2008-07-01

    The Subaru Telescope is in process of developing an open-source alternative to the 1st-generation software and databases (STARS 1) used for archiving and query. For STARS 2, we have chosen PHP and Python for scripting and MySQL as the database software. We have collected feedback from staff and observers, and used this feedback to significantly improve the design and functionality of our future archiving and query software. Archiving - We identified two weaknesses in 1st-generation STARS archiving software: a complex and inflexible table structure and uncoordinated system administration for our business model: taking pictures from the summit and archiving them in both Hawaii and Japan. We adopted a simplified and normalized table structure with passive keyword collection, and we are designing an archive-to-archive file transfer system that automatically reports real-time status and error conditions and permits error recovery. Query - We identified several weaknesses in 1st-generation STARS query software: inflexible query tools, poor sharing of calibration data, and no automatic file transfer mechanisms to observers. We are developing improved query tools and sharing of calibration data, and multi-protocol unassisted file transfer mechanisms for observers. In the process, we have redefined a 'query': from an invisible search result that can only transfer once in-house right now, with little status and error reporting and no error recovery - to a stored search result that can be monitored, transferred to different locations with multiple protocols, reporting status and error conditions and permitting recovery from errors.

  16. A survey of open source tools for business intelligence

    DEFF Research Database (Denmark)

    Thomsen, Christian; Pedersen, Torben Bach

    2005-01-01

    The industrial use of open source Business Intelligence (BI) tools is not yet common. It is therefore of interest to explore which possibilities are available for open source BI and compare the tools. In this survey paper, we consider the capabilities of a number of open source tools for BI....... In the paper, we consider three Extract-Transform-Load (ETL) tools, three On-Line Analytical Processing (OLAP) servers, two OLAP clients, and four database management systems (DBMSs). Further, we describe the licenses that the products are released under. It is argued that the ETL tools are still not very...

  17. Open source software in a practical approach for post processing of radiologic images.

    Science.gov (United States)

    Valeri, Gianluca; Mazza, Francesco Antonino; Maggi, Stefania; Aramini, Daniele; La Riccia, Luigi; Mazzoni, Giovanni; Giovagnoni, Andrea

    2015-03-01

    The purpose of this paper is to evaluate the use of open source software (OSS) to process DICOM images. We selected 23 programs for Windows and 20 programs for Mac from 150 possible OSS programs including DICOM viewers and various tools (converters, DICOM header editors, etc.). The programs selected all meet the basic requirements such as free availability, stand-alone application, presence of graphical user interface, ease of installation and advanced features beyond simple display monitor. Capabilities of data import, data export, metadata, 2D viewer, 3D viewer, support platform and usability of each selected program were evaluated on a scale ranging from 1 to 10 points. Twelve programs received a score higher than or equal to eight. Among them, five obtained a score of 9: 3D Slicer, MedINRIA, MITK 3M3, VolView, VR Render; while OsiriX received 10. OsiriX appears to be the only program able to perform all the operations taken into consideration, similar to a workstation equipped with proprietary software, allowing the analysis and interpretation of images in a simple and intuitive way. OsiriX is a DICOM PACS workstation for medical imaging and software for image processing for medical research, functional imaging, 3D imaging, confocal microscopy and molecular imaging. This application is also a good tool for teaching activities because it facilitates the attainment of learning objectives among students and other specialists.

  18. A Web-based modeling tool for the SEMAT Essence theory of software engineering

    Directory of Open Access Journals (Sweden)

    Daniel Graziotin

    2013-09-01

    Full Text Available As opposed to more mature subjects, software engineering lacks general theories that establish its foundations as a discipline. The Essence Theory of software engineering (Essence has been proposed by the Software Engineering Methods and Theory (SEMAT initiative. The goal of Essence is to develop a theoretically sound basis for software engineering practice and its wide adoption. However, Essence is far from reaching academic- and industry-wide adoption. The reasons for this include a struggle to foresee its utilization potential and a lack of tools for implementation. SEMAT Accelerator (SematAcc is a Web-positioning tool for a software engineering endeavor, which implements the SEMAT’s Essence kernel. SematAcc permits the use of Essence, thus helping to understand it. The tool enables the teaching, adoption, and research of Essence in controlled experiments and case studies.

  19. Cloud based, Open Source Software Application for Mitigating Herbicide Drift

    Science.gov (United States)

    Saraswat, D.; Scott, B.

    2014-12-01

    The spread of herbicide resistant weeds has resulted in the need for clearly marked fields. In response to this need, the University of Arkansas Cooperative Extension Service launched a program named Flag the Technology in 2011. This program uses color-coded flags as a visual alert of the herbicide trait technology within a farm field. The flag based program also serves to help avoid herbicide misapplication and prevent herbicide drift damage between fields with differing crop technologies. This program has been endorsed by Southern Weed Science Society of America and is attracting interest from across the USA, Canada, and Australia. However, flags have risk of misplacement or disappearance due to mischief or severe windstorms/thunderstorms, respectively. This presentation will discuss the design and development of a cloud-based, free application utilizing open-source technologies, called Flag the Technology Cloud (FTTCloud), for allowing agricultural stakeholders to color code their farm fields for indicating herbicide resistant technologies. The developed software utilizes modern web development practices, widely used design technologies, and basic geographic information system (GIS) based interactive interfaces for representing, color-coding, searching, and visualizing fields. This program has also been made compatible for a wider usability on different size devices- smartphones, tablets, desktops and laptops.

  20. Free and open source software for the manipulation of digital images.

    Science.gov (United States)

    Solomon, Robert W

    2009-06-01

    Free and open source software is a type of software that is nearly as powerful as commercial software but is freely downloadable. This software can do almost everything that the expensive programs can. GIMP (gnu image manipulation program) is the free program that is comparable to Photoshop, and versions are available for Windows, Macintosh, and Linux platforms. This article briefly describes how GIMP can be installed and used to manipulate radiology images. It is no longer necessary to budget large amounts of money for high-quality software to achieve the goals of image processing and document creation because free and open source software is available for the user to download at will.

  1. The Role of Free/Libre and Open Source Software in Learning Health Systems.

    Science.gov (United States)

    Paton, C; Karopka, T

    2017-08-01

    Objective: To give an overview of the role of Free/Libre and Open Source Software (FLOSS) in the context of secondary use of patient data to enable Learning Health Systems (LHSs). Methods: We conducted an environmental scan of the academic and grey literature utilising the MedFLOSS database of open source systems in healthcare to inform a discussion of the role of open source in developing LHSs that reuse patient data for research and quality improvement. Results: A wide range of FLOSS is identified that contributes to the information technology (IT) infrastructure of LHSs including operating systems, databases, frameworks, interoperability software, and mobile and web apps. The recent literature around the development and use of key clinical data management tools is also reviewed. Conclusions: FLOSS already plays a critical role in modern health IT infrastructure for the collection, storage, and analysis of patient data. The nature of FLOSS systems to be collaborative, modular, and modifiable may make open source approaches appropriate for building the digital infrastructure for a LHS. Georg Thieme Verlag KG Stuttgart.

  2. Teaching Undergraduate Software Engineering Using Open Source Development Tools

    Science.gov (United States)

    2012-01-01

    ware. Some example appliances are: a LAMP stack, Redmine, MySQL database, Moodle, Tom- cat on Apache, and Bugzilla. Some of the important features...Ada, C, C++, PHP , Py- thon, etc., and also supports a wide range of SDKs such as Google’s Android SDK and the Google Web Toolkit SDK. Additionally

  3. Lightweight Methods for Effective Verification of Software Product Lines with Off-the-Shelf Tools

    DEFF Research Database (Denmark)

    Iosif-Lazar, Alexandru Florin

    Certification is the process of assessing the quality of a product and whether it meets a set of requirements and adheres to functional and safety standards. I is often legally required to provide guarantee for human safety and to make the product available on the market. The certification process...... relies on objective evidence of quality, which is produced by using qualified and state-of-the-art tools and verification and validation techniques. Software product line (SPL) engineering distributes costs among similar products that are developed simultaneously. However, SPL certification faces major...... SPL reengineering projects that involve complex source code transformations. To facilitate product (re)certification, the transformation must preserve certain qualitative properties such as code structure and semantics—a difficult task due to the complexity of the transformation and because certain...

  4. Contingency Contractor Optimization Phase 3 Sustainment Third-Party Software List - Contingency Contractor Optimization Tool - Prototype

    Energy Technology Data Exchange (ETDEWEB)

    Durfee, Justin David; Frazier, Christopher Rawls; Bandlow, Alisa

    2016-05-01

    The Contingency Contractor Optimization Tool - Prototype (CCOT-P) requires several third-party software packages. These are documented below for each of the CCOT-P elements: client, web server, database server, solver, web application and polling application.

  5. Choosing your weapons : on sentiment analysis tools for software engineering research

    NARCIS (Netherlands)

    Jongeling, R.M.; Datta, S.; Serebrenik, A.; Koschke, R.; Krinke, J.; Robillard, M.

    2015-01-01

    Recent years have seen an increasing attention to social aspects of software engineering, including studies of emotions and sentiments experienced and expressed by the software developers. Most of these studies reuse existing sentiment analysis tools such as SentiStrength and NLTK. However, these

  6. Accuracy Test of Software Architecture Compliance Checking Tools – Test Instruction

    NARCIS (Netherlands)

    Pruijt, Leo; van der Werf, J.M.E.M.|info:eu-repo/dai/nl/36950674X; Brinkkemper., Sjaak|info:eu-repo/dai/nl/07500707X

    2015-01-01

    Software Architecture Compliance Checking (SACC) is an approach to verify conformance of implemented program code to high-level models of architectural design. Static SACC focuses on the modular software architecture and on the existence of rule violating dependencies between modules. Accurate tool

  7. Learn by Yourself: The Self-Learning Tools for Qualitative Analysis Software Packages

    Science.gov (United States)

    Freitas, Fábio; Ribeiro, Jaime; Brandão, Catarina; Reis, Luís Paulo; de Souza, Francislê Neri; Costa, António Pedro

    2017-01-01

    Computer Assisted Qualitative Data Analysis Software (CAQDAS) are tools that help researchers to develop qualitative research projects. These software packages help the users with tasks such as transcription analysis, coding and text interpretation, writing and annotation, content search and analysis, recursive abstraction, grounded theory…

  8. Sustainability of Open-Source Software Organizations as Underpinning for Sustainable Interoperability on Large Scales

    Science.gov (United States)

    Fulker, D. W.; Gallagher, J. H. R.

    2015-12-01

    OPeNDAP's Hyrax data server is an open-source framework fostering interoperability via easily-deployed Web services. Compatible with solutions listed in the (PA001) session description—federation, rigid standards and brokering/mediation—the framework can support tight or loose coupling, even with dependence on community-contributed software. Hyrax is a Web-services framework with a middleware-like design and a handler-style architecture that together reduce the interoperability challenge (for N datatypes and M user contexts) to an O(N+M) problem, similar to brokering. Combined with an open-source ethos, this reduction makes Hyrax a community tool for gaining interoperability. E.g., in its response to the Big Earth Data Initiative (BEDI), NASA references OPeNDAP-based interoperability. Assuming its suitability, the question becomes: how sustainable is OPeNDAP, a small not-for-profit that produces open-source software, i.e., has no software-sales? In other words, if geoscience interoperability depends on OPeNDAP and similar organizations, are those entities in turn sustainable? Jim Collins (in Good to Great) highlights three questions that successful companies can answer (paraphrased here): What is your passion? Where is your world-class excellence? What drives your economic engine? We attempt to shed light on OPeNDAP sustainability by examining these. Passion: OPeNDAP has a focused passion for improving the effectiveness of scientific data sharing and use, as deeply-cooperative community endeavors. Excellence: OPeNDAP has few peers in remote, scientific data access. Skills include computer science with experience in data science, (operational, secure) Web services, and software design (for servers and clients, where the latter vary from Web pages to standalone apps and end-user programs). Economic Engine: OPeNDAP is an engineering services organization more than a product company, despite software being key to OPeNDAP's reputation. In essence, provision of

  9. Cloud-Based SimJavaWeb Software Tool to Learn Simulation

    Directory of Open Access Journals (Sweden)

    A. Yu. Bykov

    2017-01-01

    Full Text Available Currently, in simulation there is a trend towards using the distributed software tools, particularly ones, which are using cloud technologies and the Internet. The article considers a simulation educational tool, implemented as a web application using the Java language with special Java class library developed for simulation. It is focused on a discrete event approach to modeling, similarly to the GPSS language, and intended for queuing systems simulation.The structure of the models obtained using this class library is similar to that of the GPSS language models. Also, the simulation language interpreter similar to GPSS is created using this class library, with some differences in the individual statements.Simulation experiments are performed on the server-side, and on client-side you must use a browser with standard functions to enter the source code into HTML-created form. Mobile devices can be used as clients. The source code of a model can be represented both in the Java language using a class library and in the language similar to GPSS.The simulation system implements functions especially for educational process. For example, there is possibility for a student to upload learning materials on the server, send developed software and reports of test control to the teacher via the Internet, and receive a detailed assessment of their results from the teacher. Also detailed results of passed tests in learning modules are entered, and some other functions are implemented in the system.As examples, the article considers models of the m/M/n/0 type queuing system in Java with a class library, and in the language similar to GPSS, shows simulation results, and presents the analytical model and calculations for this system. Analytical calculations proved that the modeling system is useful, as it overlaps simulation results with the acceptable error. Some approaches to the interaction with students through the Internet, used in modeling environment, can

  10. Software Engineering Tools for Scientific Models, Phase I

    Data.gov (United States)

    National Aeronautics and Space Administration — We design and demonstrate the feasibility of extending the open source Eclipse integrated development environment (IDE) to support the full range of capabilities now...

  11. The Growth of open source: A look at how companies are utilizing open source software in their business models

    OpenAIRE

    Feare, David

    2009-01-01

    This paper examines how open source software is being incorporated into the business models of companies in the software industry. The goal is to answer the question of whether the open source model can help sustain economic growth. While some companies are able to maintain a "pure" open source approach with their business model, the reality is that most companies are relying on proprietary add-on value in order to generate revenue because open source itself is simply not big business. Ultima...

  12. CellProfiler and KNIME: open source tools for high content screening.

    Science.gov (United States)

    Stöter, Martin; Niederlein, Antje; Barsacchi, Rico; Meyenhofer, Felix; Brandl, Holger; Bickle, Marc

    2013-01-01

    High content screening (HCS) has established itself in the world of the pharmaceutical industry as an essential tool for drug discovery and drug development. HCS is currently starting to enter the academic world and might become a widely used technology. Given the diversity of problems tackled in academic research, HCS could experience some profound changes in the future, mainly with more imaging modalities and smart microscopes being developed. One of the limitations in the establishment of HCS in academia is flexibility and cost. Flexibility is important to be able to adapt the HCS setup to accommodate the multiple different assays typical of academia. Many cost factors cannot be avoided, but the costs of the software packages necessary to analyze large datasets can be reduced by using Open Source software. We present and discuss the Open Source software CellProfiler for image analysis and KNIME for data analysis and data mining that provide software solutions which increase flexibility and keep costs low.

  13. Multiscale Software Tool for Controls Prototyping in Supersonic Combustors

    National Research Council Canada - National Science Library

    Pindera, M

    2004-01-01

    .... In Phase I we have developed a proof-of-concept version of such a tool. We have developed a model-free direct control strategy with on-line training and demonstrated its capabilities in controlling isolator unstart in a hypersonic combustor...

  14. Software Tools | Office of Cancer Clinical Proteomics Research

    Science.gov (United States)

    The CPTAC program develops new approaches to elucidate aspects of the molecular complexity of cancer made from large-scale proteogenomic datasets, and advance them toward precision medicine.  Part of the CPTAC mission is to make data and tools available and accessible to the greater research community to accelerate the discovery process.

  15. A Process Framework for Designing Software Reference Architectures for Providing Tools as a Service

    DEFF Research Database (Denmark)

    Chauhan, Muhammad Aufeef; Babar, Muhammad Ali; Probst, Christian W.

    2016-01-01

    of software systems need customized and systematic SRA design and evaluation methods. In this paper, we present a software Reference Architecture Design process Framework (RADeF) that can be used for analysis, design and evaluation of the SRA for provisioning of Tools as a Service as part of a cloud......Software Reference Architecture (SRA), which is a generic architecture solution for a specific type of software systems, provides foundation for the design of concrete architectures in terms of architecture design guidelines and architecture elements. The complexity and size of certain types......-enabled workSPACE (TSPACE). The framework is based on the state of the art results from literature and our experiences with designing software architectures for cloud-based systems. We have applied RADeF SRA design two types of TSPACE: software architecting TSPACE and software implementation TSPACE...

  16. The ALPS project release 2.0: open source software for strongly correlated systems

    International Nuclear Information System (INIS)

    Bauer, B; Gamper, L; Gukelberger, J; Hehn, A; Isakov, S V; Ma, P N; Mates, P; Carr, L D; Evertz, H G; Feiguin, A; Freire, J; Koop, D; Fuchs, S; Gull, E; Guertler, S; Igarashi, R; Matsuo, H; Parcollet, O; Pawłowski, G; Picon, J D

    2011-01-01

    We present release 2.0 of the ALPS (Algorithms and Libraries for Physics Simulations) project, an open source software project to develop libraries and application programs for the simulation of strongly correlated quantum lattice models such as quantum magnets, lattice bosons, and strongly correlated fermion systems. The code development is centered on common XML and HDF5 data formats, libraries to simplify and speed up code development, common evaluation and plotting tools, and simulation programs. The programs enable non-experts to start carrying out serial or parallel numerical simulations by providing basic implementations of the important algorithms for quantum lattice models: classical and quantum Monte Carlo (QMC) using non-local updates, extended ensemble simulations, exact and full diagonalization (ED), the density matrix renormalization group (DMRG) both in a static version and a dynamic time-evolving block decimation (TEBD) code, and quantum Monte Carlo solvers for dynamical mean field theory (DMFT). The ALPS libraries provide a powerful framework for programmers to develop their own applications, which, for instance, greatly simplify the steps of porting a serial code onto a parallel, distributed memory machine. Major changes in release 2.0 include the use of HDF5 for binary data, evaluation tools in Python, support for the Windows operating system, the use of CMake as build system and binary installation packages for Mac OS X and Windows, and integration with the VisTrails workflow provenance tool. The software is available from our web server at http://alps.comp-phys.org/

  17. Informed-Proteomics: open-source software package for top-down proteomics

    Energy Technology Data Exchange (ETDEWEB)

    Park, Jungkap; Piehowski, Paul D.; Wilkins, Christopher; Zhou, Mowei; Mendoza, Joshua; Fujimoto, Grant M.; Gibbons, Bryson C.; Shaw, Jared B.; Shen, Yufeng; Shukla, Anil K.; Moore, Ronald J.; Liu, Tao; Petyuk, Vladislav A.; Tolić, Nikola; Paša-Tolić, Ljiljana; Smith, Richard D.; Payne, Samuel H.; Kim, Sangtae

    2017-08-07

    Top-down proteomics involves the analysis of intact proteins. This approach is very attractive as it allows for analyzing proteins in their endogenous form without proteolysis, preserving valuable information about post-translation modifications, isoforms, proteolytic processing or their combinations collectively called proteoforms. Moreover, the quality of the top-down LC-MS/MS datasets is rapidly increasing due to advances in the liquid chromatography and mass spectrometry instrumentation and sample processing protocols. However, the top-down mass spectra are substantially more complex compare to the more conventional bottom-up data. To take full advantage of the increasing quality of the top-down LC-MS/MS datasets there is an urgent need to develop algorithms and software tools for confident proteoform identification and quantification. In this study we present a new open source software suite for top-down proteomics analysis consisting of an LC-MS feature finding algorithm, a database search algorithm, and an interactive results viewer. The presented tool along with several other popular tools were evaluated using human-in-mouse xenograft luminal and basal breast tumor samples that are known to have significant differences in protein abundance based on bottom-up analysis.

  18. RATIO_TOOL - SOFTWARE FOR COMPUTING IMAGE RATIOS

    Science.gov (United States)

    Yates, G. L.

    1994-01-01

    Geological studies analyze spectral data in order to gain information on surface materials. RATIO_TOOL is an interactive program for viewing and analyzing large multispectral image data sets that have been created by an imaging spectrometer. While the standard approach to classification of multispectral data is to match the spectrum for each input pixel against a library of known mineral spectra, RATIO_TOOL uses ratios of spectral bands in order to spot significant areas of interest within a multispectral image. Each image band can be viewed iteratively, or a selected image band of the data set can be requested and displayed. When the image ratios are computed, the result is displayed as a gray scale image. At this point a histogram option helps in viewing the distribution of values. A thresholding option can then be used to segment the ratio image result into two to four classes. The segmented image is then color coded to indicate threshold classes and displayed alongside the gray scale image. RATIO_TOOL is written in C language for Sun series computers running SunOS 4.0 and later. It requires the XView toolkit and the OpenWindows window manager (version 2.0 or 3.0). The XView toolkit is distributed with Open Windows. A color monitor is also required. The standard distribution medium for RATIO_TOOL is a .25 inch streaming magnetic tape cartridge in UNIX tar format. An electronic copy of the documentation is included on the program media. RATIO_TOOL was developed in 1992 and is a copyrighted work with all copyright vested in NASA. Sun, SunOS, and OpenWindows are trademarks of Sun Microsystems, Inc. UNIX is a registered trademark of AT&T Bell Laboratories.

  19. Free and Open Source Software in North African Universities | IDRC ...

    International Development Research Centre (IDRC) Digital Library (Canada)

    ... (such as e-mail), software for administration and software for online services, ... Project partners will come from the university, government, and the private and ... Organization for Women in Science for the Developing World (OWSD), IDRC is ... IWRA/IDRC webinar on climate change and adaptive water management.

  20. The Case for Open Source Software: The Interactional Discourse Lab

    Science.gov (United States)

    Choi, Seongsook

    2016-01-01

    Computational techniques and software applications for the quantitative content analysis of texts are now well established, and many qualitative data software applications enable the manipulation of input variables and the visualization of complex relations between them via interactive and informative graphical interfaces. Although advances in…

  1. Evaluation and selection of open-source EMR software packages based on integrated AHP and TOPSIS.

    Science.gov (United States)

    Zaidan, A A; Zaidan, B B; Al-Haiqi, Ahmed; Kiah, M L M; Hussain, Muzammil; Abdulnabi, Mohamed

    2015-02-01

    Evaluating and selecting software packages that meet the requirements of an organization are difficult aspects of software engineering process. Selecting the wrong open-source EMR software package can be costly and may adversely affect business processes and functioning of the organization. This study aims to evaluate and select open-source EMR software packages based on multi-criteria decision-making. A hands-on study was performed and a set of open-source EMR software packages were implemented locally on separate virtual machines to examine the systems more closely. Several measures as evaluation basis were specified, and the systems were selected based a set of metric outcomes using Integrated Analytic Hierarchy Process (AHP) and TOPSIS. The experimental results showed that GNUmed and OpenEMR software can provide better basis on ranking score records than other open-source EMR software packages. Copyright © 2014 Elsevier Inc. All rights reserved.

  2. ESTUDIO Y ANÁLISIS DE LAS LISTAS DE DISTRIBUCIÓN EN PROYECTOS DE SOFTWARE DE CÓDIGO ABIERTO COMO MEDIO PARA COMPARTIR CONOCIMIENTO / STUDY AND ANALYSIS OF OPEN SOURCE SOFTWARE PROJECTS MAILING LISTS AS A TOOL FOR KNOWLEDGE SHARING

    OpenAIRE

    Martínez Torres, R.; Toral Marín, S.L.; Barrero García, F.J.

    2008-01-01

    Este trabajo explora el papel desempeñado por las listas de distribución en proyectos de software de código abierto como herramienta para compartir conocimiento y resolver problemas. Uno de los principales beneficios que las empresas pueden obtener del uso de software de código abierto es la colaboración informal en desarrollo de aplicaciones. La herramienta más importante para esa colaboración y coordinación son las listas de correo, seguido por los foros de discusión asíncronos, informes de...

  3. APUAMA: a software tool for reaction rate calculations.

    Science.gov (United States)

    Euclides, Henrique O; P Barreto, Patricia R

    2017-06-01

    APUAMA is a free software designed to determine the reaction rate and thermodynamic properties of chemical species of a reagent system. With data from electronic structure calculations, the APUAMA determine the rate constant with tunneling correction, such as Wigner, Eckart and small curvature, and also, include the rovibrational level of diatomic molecules. The results are presented in the form of Arrhenius-Kooij form, for the reaction rate, and the thermodynamic properties are written down in the polynomial form. The word APUAMA means "fast" in Tupi-Guarani Brazilian language, then the code calculates the reaction rate on a simple and intuitive graphic interface, the form fast and practical. As program output, there are several ASCII files with tabulated information for rate constant, rovibrational levels, energy barriers and enthalpy of reaction, Arrhenius-Kooij coefficient, and also, the option to the User save all graphics in BMP format.

  4. How to use Open Source Software for Manage a Library System

    OpenAIRE

    Sumithchandra, Pandula

    2009-01-01

    Open source is an approach to the design, development, and distribution of software, offering practical accessibility to a software's source code. Some consider open source as one of various possible design approaches, while others consider it a critical strategic element of their operations. Before open source became widely adopted, developers and producers used a variety of phrases to describe the concept; the term open source gained popularity with the rise of the Internet, which provided ...

  5. Nucleonica. Web-based software tools for simulation and analysis

    International Nuclear Information System (INIS)

    Magill, J.; Dreher, R.; Soti, Z.

    2014-01-01

    The authors present a description of the Nucleonica web-based portal for simulation and analysis for a wide range of commonly encountered nuclear science applications. Advantages of a web-based approach include availability wherever there is internet access, intuitive user-friendly interface, remote access to high-power computing resources, and continual maintenance, improvement, and addition of tools and techniques common to the nuclear science industry. A description of the nuclear data resources, and some applications is given.

  6. Nonsmooth Optimization Algorithms, System Theory, and Software Tools

    Science.gov (United States)

    1993-04-13

    Optimization Algorithms, System Theory , and Scftware Tools" AFOSR-90-OO68 L AUTHOR($) Elijah Polak -Professor and Principal Investigator 7. PERFORMING...NSN 754Q-01-2W0-S500 Standard Form 295 (69O104 Draft) F’wsa*W by hA Sit 230.1""V AFOSR-90-0068 NONSMO0 TH OPTIMIZA TION A L GORI THMS, SYSTEM THEORY , AND

  7. Fighting software piracy: Which governance tools matter in Africa?

    OpenAIRE

    Antonio R. Andrés; Simplice A. Asongu

    2012-01-01

    This article integrates previously missing components of government quality into the governance-piracy nexus in exploring governance mechanisms by which global obligations for the treatment of IPRs are effectively transmitted from international to the national level in the battle against piracy. It assesses the best governance tools in the fight against piracy and upholding of Intellectual Property Rights (IPRs). The instrumentality of IPR laws (treaties) in tackling piracy through good gover...

  8. Learning from open source software projects to improve scientific review.

    Science.gov (United States)

    Ghosh, Satrajit S; Klein, Arno; Avants, Brian; Millman, K Jarrod

    2012-01-01

    Peer-reviewed publications are the primary mechanism for sharing scientific results. The current peer-review process is, however, fraught with many problems that undermine the pace, validity, and credibility of science. We highlight five salient problems: (1) reviewers are expected to have comprehensive expertise; (2) reviewers do not have sufficient access to methods and materials to evaluate a study; (3) reviewers are neither identified nor acknowledged; (4) there is no measure of the quality of a review; and (5) reviews take a lot of time, and once submitted cannot evolve. We propose that these problems can be resolved by making the following changes to the review process. Distributing reviews to many reviewers would allow each reviewer to focus on portions of the article that reflect the reviewer's specialty or area of interest and place less of a burden on any one reviewer. Providing reviewers materials and methods to perform comprehensive evaluation would facilitate transparency, greater scrutiny, and replication of results. Acknowledging reviewers makes it possible to quantitatively assess reviewer contributions, which could be used to establish the impact of the reviewer in the scientific community. Quantifying review quality could help establish the importance of individual reviews and reviewers as well as the submitted article. Finally, we recommend expediting post-publication reviews and allowing for the dialog to continue and flourish in a dynamic and interactive manner. We argue that these solutions can be implemented by adapting existing features from open-source software management and social networking technologies. We propose a model of an open, interactive review system that quantifies the significance of articles, the quality of reviews, and the reputation of reviewers.

  9. Open Source for Knowledge and Learning Management: Strategies beyond Tools

    Science.gov (United States)

    Lytras, Miltiadis, Ed.; Naeve, Ambjorn, Ed.

    2007-01-01

    In the last years, knowledge and learning management have made a significant impact on the IT research community. "Open Source for Knowledge and Learning Management: Strategies Beyond Tools" presents learning and knowledge management from a point of view where the basic tools and applications are provided by open source technologies.…

  10. Un uso sostenibile delle risorse idriche con dati telerilevati e software Open Source

    Directory of Open Access Journals (Sweden)

    Pasquale Nino

    2009-03-01

    Full Text Available Sustainable agricultural water use by means of open source decision support systems and Earth Observation data.The PLEIADeS project (funded by European VI Framework Program addresses the improvement of water use and management in agriculture through innovative Information Technologies and the most recent Earth Observation (EO methodologies. Within this framework a tool, based on Open Source software, which aims at helping water managers to optimize the water consumption, has been realized. One of the key features of the system is the delivering of a near real-time irrigation schedule to farmers produced through the integration of EO-derived product and fi eld data inside a GIS environment that provides a reliable crop requirement estimation at farm level.

  11. Un uso sostenibile delle risorse idriche con dati telerilevati e software Open Source

    Directory of Open Access Journals (Sweden)

    Pasquale Nino

    2009-03-01

    Full Text Available Sustainable agricultural water use by means of open source decision support systems and Earth Observation data. The PLEIADeS project (funded by European VI Framework Program addresses the improvement of water use and management in agriculture through innovative Information Technologies and the most recent Earth Observation (EO methodologies. Within this framework a tool, based on Open Source software, which aims at helping water managers to optimize the water consumption, has been realized. One of the key features of the system is the delivering of a near real-time irrigation schedule to farmers produced through the integration of EO-derived product and fi eld data inside a GIS environment that provides a reliable crop requirement estimation at farm level.

  12. Key characteristics relevant for selecting knowledge management software tools

    CSIR Research Space (South Africa)

    Smuts, H

    2011-07-01

    Full Text Available The shift to knowledge as the primary source of value results in the new economy being led by those who manage knowledge effectively. Today’s organisations are creating and leveraging knowledge, data and information at an unprecedented pace – a...

  13. Falcon: a highly flexible open-source software for closed-loop neuroscience

    Science.gov (United States)

    Ciliberti, Davide; Kloosterman, Fabian

    2017-08-01

    Objective. Closed-loop experiments provide unique insights into brain dynamics and function. To facilitate a wide range of closed-loop experiments, we created an open-source software platform that enables high-performance real-time processing of streaming experimental data. Approach. We wrote Falcon, a C++ multi-threaded software in which the user can load and execute an arbitrary processing graph. Each node of a Falcon graph is mapped to a single thread and nodes communicate with each other through thread-safe buffers. The framework allows for easy implementation of new processing nodes and data types. Falcon was tested both on a 32-core and a 4-core workstation. Streaming data was read from either a commercial acquisition system (Neuralynx) or the open-source Open Ephys hardware, while closed-loop TTL pulses were generated with a USB module for digital output. We characterized the round-trip latency of our Falcon-based closed-loop system, as well as the specific latency contribution of the software architecture, by testing processing graphs with up to 32 parallel pipelines and eight serial stages. We finally deployed Falcon in a task of real-time detection of population bursts recorded live from the hippocampus of a freely moving rat. Main results. On Neuralynx hardware, round-trip latency was well below 1 ms and stable for at least 1 h, while on Open Ephys hardware latencies were below 15 ms. The latency contribution of the software was below 0.5 ms. Round-trip and software latencies were similar on both 32- and 4-core workstations. Falcon was used successfully to detect population bursts online with ~40 ms average latency. Significance. Falcon is a novel open-source software for closed-loop neuroscience. It has sub-millisecond intrinsic latency and gives the experimenter direct control of CPU resources. We envisage Falcon to be a useful tool to the neuroscientific community for implementing a wide variety of closed-loop experiments, including those

  14. Falcon: a highly flexible open-source software for closed-loop neuroscience.

    Science.gov (United States)

    Ciliberti, Davide; Kloosterman, Fabian

    2017-08-01

    Closed-loop experiments provide unique insights into brain dynamics and function. To facilitate a wide range of closed-loop experiments, we created an open-source software platform that enables high-performance real-time processing of streaming experimental data. We wrote Falcon, a C++ multi-threaded software in which the user can load and execute an arbitrary processing graph. Each node of a Falcon graph is mapped to a single thread and nodes communicate with each other through thread-safe buffers. The framework allows for easy implementation of new processing nodes and data types. Falcon was tested both on a 32-core and a 4-core workstation. Streaming data was read from either a commercial acquisition system (Neuralynx) or the open-source Open Ephys hardware, while closed-loop TTL pulses were generated with a USB module for digital output. We characterized the round-trip latency of our Falcon-based closed-loop system, as well as the specific latency contribution of the software architecture, by testing processing graphs with up to 32 parallel pipelines and eight serial stages. We finally deployed Falcon in a task of real-time detection of population bursts recorded live from the hippocampus of a freely moving rat. On Neuralynx hardware, round-trip latency was well below 1 ms and stable for at least 1 h, while on Open Ephys hardware latencies were below 15 ms. The latency contribution of the software was below 0.5 ms. Round-trip and software latencies were similar on both 32- and 4-core workstations. Falcon was used successfully to detect population bursts online with ~40 ms average latency. Falcon is a novel open-source software for closed-loop neuroscience. It has sub-millisecond intrinsic latency and gives the experimenter direct control of CPU resources. We envisage Falcon to be a useful tool to the neuroscientific community for implementing a wide variety of closed-loop experiments, including those requiring use of complex data structures and real

  15. A Software Tool for Optimal Sizing of PV Systems in Malaysia

    Directory of Open Access Journals (Sweden)

    Tamer Khatib

    2012-01-01

    Full Text Available This paper presents a MATLAB based user friendly software tool called as PV.MY for optimal sizing of photovoltaic (PV systems. The software has the capabilities of predicting the metrological variables such as solar energy, ambient temperature and wind speed using artificial neural network (ANN, optimizes the PV module/ array tilt angle, optimizes the inverter size and calculate optimal capacities of PV array, battery, wind turbine and diesel generator in hybrid PV systems. The ANN based model for metrological prediction uses four meteorological variables, namely, sun shine ratio, day number and location coordinates. As for PV system sizing, iterative methods are used for determining the optimal sizing of three types of PV systems, which are standalone PV system, hybrid PV/wind system and hybrid PV/diesel generator system. The loss of load probability (LLP technique is used for optimization in which the energy sources capacities are the variables to be optimized considering very low LLP. As for determining the optimal PV panels tilt angle and inverter size, the Liu and Jordan model for solar energy incident on a tilt surface is used in optimizing the monthly tilt angle, while a model for inverter efficiency curve is used in the optimization of inverter size.

  16. CoCoa: a software tool for estimating the coefficient of coancestry from multilocus genotype data.

    Science.gov (United States)

    Maenhout, Steven; De Baets, Bernard; Haesaert, Geert

    2009-10-15

    Phenotypic data collected in breeding programs and marker-trait association studies are often analyzed by means of linear mixed models. In these models, the covariance between the genetic background effects of all genotypes under study is modeled by means of pairwise coefficients of coancestry. Several marker-based coancestry estimation procedures allow to estimate this covariance matrix, but generally introduce a certain amount of bias when the examined genotypes are part of a breeding program. CoCoa implements the most commonly used marker-based coancestry estimation procedures and as such, allows to select the best fitting covariance structure for the phenotypic data at hand. This better model fit translates into an increased power and improved type I error control in association studies and an improved accuracy in phenotypic prediction studies. The presented software package also provides an implementation of the new Weighted Alikeness in State (WAIS) estimator for use in hybrid breeding programs. Besides several matrix manipulation tools, CoCoa implements two different bending heuristics, in case the inverse of an ill-conditioned coancestry matrix estimate is needed. The software package CoCoa is freely available at http://webs.hogent.be/cocoa. Source code, manual, binaries for 32 and 64-bit Linux systems and an installer for Microsoft Windows are provided. The core components of CoCoa are written in C++, while the graphical user interface is written in Java.

  17. Atrioventricular junction (AVJ) motion tracking: a software tool with ITK/VTK/Qt.

    Science.gov (United States)

    Pengdong Xiao; Shuang Leng; Xiaodan Zhao; Hua Zou; Ru San Tan; Wong, Philip; Liang Zhong

    2016-08-01

    The quantitative measurement of the Atrioventricular Junction (AVJ) motion is an important index for ventricular functions of one cardiac cycle including systole and diastole. In this paper, a software tool that can conduct AVJ motion tracking from cardiovascular magnetic resonance (CMR) images is presented by using Insight Segmentation and Registration Toolkit (ITK), The Visualization Toolkit (VTK) and Qt. The software tool is written in C++ by using Visual Studio Community 2013 integrated development environment (IDE) containing both an editor and a Microsoft complier. The software package has been successfully implemented. From the software engineering practice, it is concluded that ITK, VTK, and Qt are very handy software systems to implement automatic image analysis functions for CMR images such as quantitative measure of motion by visual tracking.

  18. OpenADR Open Source Toolkit: Developing Open Source Software for the Smart Grid

    Energy Technology Data Exchange (ETDEWEB)

    McParland, Charles

    2011-02-01

    Demand response (DR) is becoming an increasingly important part of power grid planning and operation. The advent of the Smart Grid, which mandates its use, further motivates selection and development of suitable software protocols to enable DR functionality. The OpenADR protocol has been developed and is being standardized to serve this goal. We believe that the development of a distributable, open source implementation of OpenADR will benefit this effort and motivate critical evaluation of its capabilities, by the wider community, for providing wide-scale DR services

  19. Open source software and low cost sensors for teaching UAV science

    Science.gov (United States)

    Kefauver, S. C.; Sanchez-Bragado, R.; El-Haddad, G.; Araus, J. L.

    2016-12-01

    Drones, also known as UASs (unmanned aerial systems), UAVs (Unmanned Aerial Vehicles) or RPAS (Remotely piloted aircraft systems), are both useful advanced scientific platforms and recreational toys that are appealing to younger generations. As such, they can make for excellent education tools as well as low-cost scientific research project alternatives. However, the process of taking pretty pictures to remote sensing science can be daunting if one is presented with only expensive software and sensor options. There are a number of open-source tools and low cost platform and sensor options available that can provide excellent scientific research results, and, by often requiring more user-involvement than commercial software and sensors, provide even greater educational benefits. Scale-invariant feature transform (SIFT) algorithm implementations, such as the Microsoft Image Composite Editor (ICE), which can create quality 2D image mosaics with some motion and terrain adjustments and VisualSFM (Structure from Motion), which can provide full image mosaicking with movement and orthorectification capacities. RGB image quantification using alternate color space transforms, such as the BreedPix indices, can be calculated via plugins in the open-source software Fiji (http://fiji.sc/Fiji; http://github.com/george-haddad/CIMMYT). Recent analyses of aerial images from UAVs over different vegetation types and environments have shown RGB metrics can outperform more costly commercial sensors. Specifically, Hue-based pixel counts, the Triangle Greenness Index (TGI), and the Normalized Green Red Difference Index (NGRDI) consistently outperformed NDVI in estimating abiotic and biotic stress impacts on crop health. Also, simple kits are available for NDVI camera conversions. Furthermore, suggestions for multivariate analyses of the different RGB indices in the "R program for statistical computing", such as classification and regression trees can allow for a more approachable

  20. An evaluation of software tools for the design and development of cockpit displays

    Science.gov (United States)

    Ellis, Thomas D., Jr.

    1993-01-01

    The use of all-glass cockpits at the NASA Langley Research Center (LaRC) simulation facility has changed the means of design, development, and maintenance of instrument displays. The human-machine interface has evolved from a physical hardware device to a software-generated electronic display system. This has subsequently caused an increased workload at the facility. As computer processing power increases and the glass cockpit becomes predominant in facilities, software tools used in the design and development of cockpit displays are becoming both feasible and necessary for a more productive simulation environment. This paper defines LaRC requirements of a display software development tool and compares two available applications against these requirements. As a part of the software engineering process, these tools reduce development time, provide a common platform for display development, and produce exceptional real-time results.

  1. A Reference Architecture for Providing Tools as a Service to Support Global Software Development

    DEFF Research Database (Denmark)

    Chauhan, Aufeef

    2014-01-01

    -computing paradigm for addressing above-mentioned issues by providing a framework to select appropriate tools as well as associated services and reference architecture of the cloud-enabled middleware platform that allows on demand provisioning of software engineering Tools as a Service (TaaS) with focus......Global Software Development (GSD) teams encounter challenges that are associated with distribution of software development activities across multiple geographic regions. The limited support for performing collaborative development and engineering activities and lack of sufficient support......-based solutions. The restricted ability of the organizations to have desired alignment of tools with software engineering and development processes results in administrative and managerial overhead that incur increased development cost and poor product quality. Moreover, stakeholders involved in the projects have...

  2. Computer-aided design in power engineering. Application of software tools

    International Nuclear Information System (INIS)

    Stojkovic, Zlatan

    2012-01-01

    Demonstrates the use software tools in the practice of design in the field of power systems. Presents many applications in the design in the field of power systems. Useful for educative purposes and practical work. This textbooks demonstrates the application of software tools in solving a series of problems from the field of designing power system structures and systems. It contains four chapters: The first chapter leads the reader through all the phases necessary in the procedures of computer aided modeling and simulation. It guides through the complex problems presenting on the basis of eleven original examples. The second chapter presents application of software tools in power system calculations of power systems equipment design. Several design example calculations are carried out using engineering standards like MATLAB, EMTP/ATP, Excel and Access, AutoCAD and Simulink. The third chapters focuses on the graphical documentation using a collection of software tools (AutoCAD, EPLAN, SIMARIS SIVACON, SIMARIS DESIGN) which enable the complete automation of the development of graphical documentation of a power systems. In the fourth chapter, the application of software tools in the project management in power systems is discussed. Here, the emphasis is put on the standard software MS Excel and MS Project.

  3. Computer-aided design in power engineering. Application of software tools

    Energy Technology Data Exchange (ETDEWEB)

    Stojkovic, Zlatan

    2012-07-01

    Demonstrates the use software tools in the practice of design in the field of power systems. Presents many applications in the design in the field of power systems. Useful for educative purposes and practical work. This textbooks demonstrates the application of software tools in solving a series of problems from the field of designing power system structures and systems. It contains four chapters: The first chapter leads the reader through all the phases necessary in the procedures of computer aided modeling and simulation. It guides through the complex problems presenting on the basis of eleven original examples. The second chapter presents application of software tools in power system calculations of power systems equipment design. Several design example calculations are carried out using engineering standards like MATLAB, EMTP/ATP, Excel and Access, AutoCAD and Simulink. The third chapters focuses on the graphical documentation using a collection of software tools (AutoCAD, EPLAN, SIMARIS SIVACON, SIMARIS DESIGN) which enable the complete automation of the development of graphical documentation of a power systems. In the fourth chapter, the application of software tools in the project management in power systems is discussed. Here, the emphasis is put on the standard software MS Excel and MS Project.

  4. Open Source Software in Medium Size Organizations: Key Factors for Adoption

    Science.gov (United States)

    Solomon, Jerry T.

    2010-01-01

    For-profit organizations are constantly evaluating new technologies to gain competitive advantage. One such technology, application software, has changed significantly over the past 25 years with the introduction of Open Source Software (OSS). In contrast to commercial software that is developed by private companies and sold to organizations, OSS…

  5. How Do Open Source Communities Document Software Architecture: An Exploratory Survey

    NARCIS (Netherlands)

    Ding, W.; Liang, P.; Tang, A.; Van Vliet, H.; Shahin, M.

    2014-01-01

    Software architecture (SA) documentation provides a blueprint of a software-intensive system for the communication between stakeholders about the high-level design of the system. In open source software (OSS) development, a lack of SA documentation may hinder the use and further development of OSS,

  6. Bug-Fixing and Code-Writing: The Private Provision of Open Source Software

    DEFF Research Database (Denmark)

    Bitzer, Jürgen; Schröder, Philipp

    2002-01-01

    Open source software (OSS) is a public good. A self-interested individual would consider providing such software, if the benefits he gained from having it justified the cost of programming. Nevertheless each agent is tempted to free ride and wait for others to develop the software instead...

  7. Shaping Software Engineering Curricula Using Open Source Communities: A Case Study

    Science.gov (United States)

    Bowring, James; Burke, Quinn

    2016-01-01

    This paper documents four years of a novel approach to teaching a two-course sequence in software engineering as part of the ABET-accredited computer science curriculum at the College of Charleston. This approach is team-based and centers on learning software engineering in the context of open source software projects. In the first course, teams…

  8. Technical Evaluation Report 24: Open Source Software: an alternative to costly Learning Management Systems

    Directory of Open Access Journals (Sweden)

    Jim Depow

    2003-10-01

    Full Text Available This is the first in a series of two reports discussing the use of open source software (OSS and free software (FS in online education as an alternative to expensive proprietary software. It details the steps taken in a Canadian community college to download and install the Linux Operating System in order to support an OSS/ FS learning management system (LMS.

  9. E-GRANTHALAYA: LIBRARY INFORMATION SCIENCE OPEN SOURCE AUTOMATION SOFTWARE: AN OVERVIEW

    OpenAIRE

    Umaiyorubagam, R.; JohnAnish, R; Jeyapragash, B

    2015-01-01

    The paper describes that Free Library software’s availability on-line. The open source software is available on three categories.They are library automation software, Digital Library software and integrated library packages. The paper discusses these aspect in detail.

  10. PT-SAFE: a software tool for development and annunciation of medical audible alarms.

    Science.gov (United States)

    Bennett, Christopher L; McNeer, Richard R

    2012-03-01

    Recent reports by The Joint Commission as well as the Anesthesia Patient Safety Foundation have indicated that medical audible alarm effectiveness needs to be improved. Several recent studies have explored various approaches to improving the audible alarms, motivating the authors to develop real-time software capable of comparing such alarms. We sought to devise software that would allow for the development of a variety of audible alarm designs that could also integrate into existing operating room equipment configurations. The software is meant to be used as a tool for alarm researchers to quickly evaluate novel alarm designs. A software tool was developed for the purpose of creating and annunciating audible alarms. The alarms consisted of annunciators that were mapped to vital sign data received from a patient monitor. An object-oriented approach to software design was used to create a tool that is flexible and modular at run-time, can annunciate wave-files from disk, and can be programmed with MATLAB by the user to create custom alarm algorithms. The software was tested in a simulated operating room to measure technical performance and to validate the time-to-annunciation against existing equipment alarms. The software tool showed efficacy in a simulated operating room environment by providing alarm annunciation in response to physiologic and ventilator signals generated by a human patient simulator, on average 6.2 seconds faster than existing equipment alarms. Performance analysis showed that the software was capable of supporting up to 15 audible alarms on a mid-grade laptop computer before audio dropouts occurred. These results suggest that this software tool provides a foundation for rapidly staging multiple audible alarm sets from the laboratory to a simulation environment for the purpose of evaluating novel alarm designs, thus producing valuable findings for medical audible alarm standardization.

  11. Development of tools for safety analysis of control software in advanced reactors

    Energy Technology Data Exchange (ETDEWEB)

    Guarro, S.; Yau, M.; Motamed, M. [Advanced Systems Concepts Associates, El Segundo, CA (United States)

    1996-04-01

    Software based control systems have gained a pervasive presence in a wide variety of applications, including nuclear power plant control and protection systems which are within the oversight and licensing responsibility of the US Nuclear Regulatory Commission. While the cost effectiveness and flexibility of software based plant process control is widely recognized, it is very difficult to achieve and prove high levels of demonstrated dependability and safety assurance for the functions performed by process control software, due to the very flexibility and potential complexity of the software itself. The development of tools to model, analyze and test software design and implementations in the context of the system that the software is designed to control can greatly assist the task of providing higher levels of assurance than those obtainable by software testing alone. This report presents and discusses the development of the Dynamic Flowgraph Methodology (DFM) and its application in the dependability and assurance analysis of software-based control systems. The features of the methodology and full-scale examples of application to both generic process and nuclear power plant control systems are presented and discussed in detail. The features of a workstation software tool developed to assist users in the application of DFM are also described.

  12. Development of tools for safety analysis of control software in advanced reactors

    International Nuclear Information System (INIS)

    Guarro, S.; Yau, M.; Motamed, M.

    1996-04-01

    Software based control systems have gained a pervasive presence in a wide variety of applications, including nuclear power plant control and protection systems which are within the oversight and licensing responsibility of the US Nuclear Regulatory Commission. While the cost effectiveness and flexibility of software based plant process control is widely recognized, it is very difficult to achieve and prove high levels of demonstrated dependability and safety assurance for the functions performed by process control software, due to the very flexibility and potential complexity of the software itself. The development of tools to model, analyze and test software design and implementations in the context of the system that the software is designed to control can greatly assist the task of providing higher levels of assurance than those obtainable by software testing alone. This report presents and discusses the development of the Dynamic Flowgraph Methodology (DFM) and its application in the dependability and assurance analysis of software-based control systems. The features of the methodology and full-scale examples of application to both generic process and nuclear power plant control systems are presented and discussed in detail. The features of a workstation software tool developed to assist users in the application of DFM are also described

  13. APT - NASA ENHANCED VERSION OF AUTOMATICALLY PROGRAMMED TOOL SOFTWARE - STAND-ALONE VERSION

    Science.gov (United States)

    Premo, D. A.

    1994-01-01

    The APT code is one of the most widely used software tools for complex numerically controlled (N/C) machining. APT is an acronym for Automatically Programmed Tools and is used to denote both a language and the computer software that processes that language. Development of the APT language and software system was begun over twenty years ago as a U. S. government sponsored industry and university research effort. APT is a "problem oriented" language that was developed for the explicit purpose of aiding the N/C machine tools. Machine-tool instructions and geometry definitions are written in the APT language to constitute a "part program." The APT part program is processed by the APT software to produce a cutter location (CL) file. This CL file may then be processed by user supplied post processors to convert the CL data into a form suitable for a particular N/C machine tool. This June, 1989 offering of the APT system represents an adaptation, with enhancements, of the public domain version of APT IV/SSX8 to the DEC VAX-11/780 for use by the Engineering Services Division of the NASA Goddard Space Flight Center. Enhancements include the super pocket feature which allows concave and convex polygon shapes of up to 40 points including shapes that overlap, that leave islands of material within the pocket, and that have one or more arcs as part of the pocket boundary. Recent modifications to APT include a rework of the POCKET subroutine and correction of an error that prevented the use within a macro of a macro variable cutter move statement combined with macro variable double check surfaces. Former modifications included the expansion of array and buffer sizes to accommodate larger part programs, and the insertion of a few user friendly error messages. The APT system software on the DEC VAX-11/780 is organized into two separate programs: the load complex and the APT processor. The load complex handles the table initiation phase and is usually only run when changes to the

  14. Open Source and Proprietary Project Management Tools for SMEs.

    OpenAIRE

    Veronika Abramova; Francisco Pires; Jorge Bernardino

    2017-01-01

    The dimensional growth and increasing difficulty in project management promoted the development of different tools that serve to facilitate project management and track project schedule, resources and overall progress. These tools offer a variety of features, from task and time management, up to integrated CRM (Customer Relationship Management) and ERP (Enterprise Resource Planning) modules. Currently, a large number of project management software is available, to assist project team during t...

  15. D-VASim: A Software Tool to Simulate and Analyze Genetic Logic Circuits

    DEFF Research Database (Denmark)

    Baig, Hasan; Madsen, Jan

    2016-01-01

    -stage researchers with limited experience in the field of biology. The Solution: Using LabVIEW to develop a user-friendly simulation tool named Dynamic Virtual Analyzer and Simulator (D-VASim), which is the first software tool in the domain of synthetic biology that provides a virtual laboratory environment...

  16. Activity Theory applied to Global Software Engineering: Theoretical Foundations and Implications for Tool Builders

    DEFF Research Database (Denmark)

    Tell, Paolo; Ali Babar, Muhammad

    2012-01-01

    Although a plethora of tools are available for Global Software Engineering (GSE) teams, it is being realized increasingly that the most prevalent desktop metaphor underpinning the majority of tools have several inherent limitations. We have proposed that Activity-Based Computing (ABC) can be a pr...... in building supporting infrastructure for GSE, and describe a proof of concept prototype....

  17. NuFTA: A CASE Tool for Automatic Software Fault Tree Analysis

    International Nuclear Information System (INIS)

    Yun, Sang Hyun; Lee, Dong Ah; Yoo, Jun Beom

    2010-01-01

    Software fault tree analysis (SFTA) is widely used for analyzing software requiring high-reliability. In SFTA, experts predict failures of system through HA-ZOP (Hazard and Operability study) or FMEA (Failure Mode and Effects Analysis) and draw software fault trees about the failures. Quality and cost of the software fault tree, therefore, depend on knowledge and experience of the experts. This paper proposes a CASE tool NuFTA in order to assist experts of safety analysis. The NuFTA automatically generate software fault trees from NuSCR formal requirements specification. NuSCR is a formal specification language used for specifying software requirements of KNICS RPS (Reactor Protection System) in Korea. We used the SFTA templates proposed by in order to generate SFTA automatically. The NuFTA also generates logical formulae summarizing the failure's cause, and we have a plan to use the formulae usefully through formal verification techniques

  18. Biology Needs Evolutionary Software Tools: Let’s Build Them Right

    Science.gov (United States)

    Team, Galaxy; Goecks, Jeremy; Taylor, James

    2018-01-01

    Abstract Research in population genetics and evolutionary biology has always provided a computational backbone for life sciences as a whole. Today evolutionary and population biology reasoning are essential for interpretation of large complex datasets that are characteristic of all domains of today’s life sciences ranging from cancer biology to microbial ecology. This situation makes algorithms and software tools developed by our community more important than ever before. This means that we, developers of software tool for molecular evolutionary analyses, now have a shared responsibility to make these tools accessible using modern technological developments as well as provide adequate documentation and training. PMID:29688462

  19. About new software and hardware tools in the education of 'Semiconductor Devices'

    International Nuclear Information System (INIS)

    Taneva, Ljudmila; Basheva, Bistra

    2009-01-01

    This paper describes the new tools, used in the education of ”Semiconductor Devices”, developed at the Technological School “Electronic Systems”, Department of the Technical University, Sofia. The software and hardware tools give the opportunity to achieve the right balance between theory and practice, and the students are given the chance to accumulate valuable “hands-on” skills. The main purpose of the developed lab exercises is to demonstrate the use of some electronic components and practice with them. Keywords: semiconductors, media software tool, hardware, education

  20. Software Tools for Robust Analysis of High-Dimensional Data

    Directory of Open Access Journals (Sweden)

    Valentin Todorov

    2014-06-01

    Full Text Available The present work discusses robust multivariate methods specifically designed for highdimensions. Their implementation in R is presented and their application is illustratedon examples. The first group are algorithms for outlier detection, already introducedelsewhere and implemented in other packages. The value added of the new package isthat all methods follow the same design pattern and thus can use the same graphicaland diagnostic tools. The next topic covered is sparse principal components including anobject oriented interface to the standard method proposed by Zou, Hastie, and Tibshirani(2006 and the robust one proposed by Croux, Filzmoser, and Fritz (2013. Robust partialleast squares (see Hubert and Vanden Branden 2003 as well as partial least squares fordiscriminant analysis conclude the scope of the new package.

  1. Tracking PACS usage with open source tools.

    Science.gov (United States)

    French, Todd L; Langer, Steve G

    2011-08-01

    A typical choice faced by Picture Archiving and Communication System (PACS) administrators is deciding how many PACS workstations are needed and where they should be sited. Oftentimes, the social consequences of having too few are severe enough to encourage oversupply and underutilization. This is costly, at best in terms of hardware and electricity, and at worst (depending on the PACS licensing and support model) in capital costs and maintenance fees. The PACS administrator needs tools to asses accurately the use to which her fleet is being subjected, and thus make informed choices before buying more workstations. Lacking a vended solution for this challenge, we developed our own.

  2. Open source tools for standardized privacy protection of medical images

    Science.gov (United States)

    Lien, Chung-Yueh; Onken, Michael; Eichelberg, Marco; Kao, Tsair; Hein, Andreas

    2011-03-01

    In addition to the primary care context, medical images are often useful for research projects and community healthcare networks, so-called "secondary use". Patient privacy becomes an issue in such scenarios since the disclosure of personal health information (PHI) has to be prevented in a sharing environment. In general, most PHIs should be completely removed from the images according to the respective privacy regulations, but some basic and alleviated data is usually required for accurate image interpretation. Our objective is to utilize and enhance these specifications in order to provide reliable software implementations for de- and re-identification of medical images suitable for online and offline delivery. DICOM (Digital Imaging and Communications in Medicine) images are de-identified by replacing PHI-specific information with values still being reasonable for imaging diagnosis and patient indexing. In this paper, this approach is evaluated based on a prototype implementation built on top of the open source framework DCMTK (DICOM Toolkit) utilizing standardized de- and re-identification mechanisms. A set of tools has been developed for DICOM de-identification that meets privacy requirements of an offline and online sharing environment and fully relies on standard-based methods.

  3. Lessons learned applying CASE methods/tools to Ada software development projects

    Science.gov (United States)

    Blumberg, Maurice H.; Randall, Richard L.

    1993-01-01

    This paper describes the lessons learned from introducing CASE methods/tools into organizations and applying them to actual Ada software development projects. This paper will be useful to any organization planning to introduce a software engineering environment (SEE) or evolving an existing one. It contains management level lessons learned, as well as lessons learned in using specific SEE tools/methods. The experiences presented are from Alpha Test projects established under the STARS (Software Technology for Adaptable and Reliable Systems) project. They reflect the front end efforts by those projects to understand the tools/methods, initial experiences in their introduction and use, and later experiences in the use of specific tools/methods and the introduction of new ones.

  4. RETRANS - A tool to verify the functional equivalence of automatically generated source code with its specification

    International Nuclear Information System (INIS)

    Miedl, H.

    1998-01-01

    Following the competent technical standards (e.g. IEC 880) it is necessary to verify each step in the development process of safety critical software. This holds also for the verification of automatically generated source code. To avoid human errors during this verification step and to limit the cost effort a tool should be used which is developed independently from the development of the code generator. For this purpose ISTec has developed the tool RETRANS which demonstrates the functional equivalence of automatically generated source code with its underlying specification. (author)

  5. Building Eclectic Personal Learning Landscapes with Open Source Tools

    NARCIS (Netherlands)

    Kalz, Marco

    2008-01-01

    Kalz, M. (2005). Building Eclectic Personal Learning Landscapes with Open Source Tools. In F. de Vries, G. Attwell, R. Elferink & A. Tödt (Eds.), Open Source for Education in Europe. Research & Practice (= Proceedings of the Open Source for Education in Europe Conference) (pp. 163-168). 2005,

  6. Building Eclectic Personal Learning Landscapes with Open Source Tools

    OpenAIRE

    Kalz, Marco

    2008-01-01

    Kalz, M. (2005). Building Eclectic Personal Learning Landscapes with Open Source Tools. In F. de Vries, G. Attwell, R. Elferink & A. Tödt (Eds.), Open Source for Education in Europe. Research & Practice (= Proceedings of the Open Source for Education in Europe Conference) (pp. 163-168). 2005, Heerlen, The Netherlands.

  7. Automated software development tools in the MIS (Management Information Systems) environment

    Energy Technology Data Exchange (ETDEWEB)

    Arrowood, L.F.; Emrich, M.L.

    1987-09-11

    Quantitative and qualitative benefits can be obtained through the use of automated software development tools. Such tools are best utilized when they complement existing procedures and standards. They can assist systems analysts and programmers with project specification, design, implementation, testing, and documentation. Commercial products have been evaluated to determine their efficacy. User comments have been included to illustrate actual benefits derived from introducing these tools into MIS organizations.

  8. Towards a Reference Architecture to Provision Tools as a Service for Global Software Development

    DEFF Research Database (Denmark)

    Chauhan, Aufeef; Babar, Muhammad Ali

    2014-01-01

    Organizations involve in Global Software Development (GSD) face challenges in terms of having access to appropriate set of tools for performing distributed engineering and development activities, integration between heterogeneous desktop and web-based tools, management of artifacts developed...... distributed environment. In this paper, we argue the need to have a cloud-enabled platform for supporting GSD and propose reference architecture of a cloud based Platform for providing support to provision ecosystem of the Tools as a Service (PTaaS)....

  9. Open Source Software Development with Your Mother Language : Intercultural Collaboration Experiment 2002

    DEFF Research Database (Denmark)

    Nomura, Saeko; Ishida, Saeko; Jensen, Mika Yasuoka

    2002-01-01

    ”Open Source Software Development with Your Mother Language: Intercultural Collaboration Experiment 2002,” 10th International Conference on Human – Computer Interaction (HCII2003), June 2003, Crete, Greece.......”Open Source Software Development with Your Mother Language: Intercultural Collaboration Experiment 2002,” 10th International Conference on Human – Computer Interaction (HCII2003), June 2003, Crete, Greece....

  10. Validation of the Mobile Information Software Evaluation Tool (MISET) With Nursing Students.

    Science.gov (United States)

    Secco, M Loretta; Furlong, Karen E; Doyle, Glynda; Bailey, Judy

    2016-07-01

    This study evaluated the Mobile Information Software Evaluation Tool (MISET) with a sample of Canadian undergraduate nursing students (N = 240). Psychometric analyses determined how well the MISET assessed the extent that nursing students find mobile device-based information resources useful and supportive of learning in the clinical and classroom settings. The MISET has a valid three-factor structure with high explained variance (74.7%). Internal consistency reliabilities were high for the MISET total (.90) and three subscales: Usefulness/Helpfulness, Information Literacy Support, and Use of Evidence-Based Sources (.87 to .94). Construct validity evidence included significantly higher mean total MISET, Helpfulness/Usefulness, and Information Literacy Support scores for senior students and those with higher computer competence. The MISET is a promising tool to evaluate mobile information technologies and information literacy support; however, longitudinal assessment of changes in scores over time would determine scale sensitivity and responsiveness. [J Nurs Educ. 2016;55(7):385-390.]. Copyright 2016, SLACK Incorporated.

  11. DAE Tools: equation-based object-oriented modelling, simulation and optimisation software

    Directory of Open Access Journals (Sweden)

    Dragan D. Nikolić

    2016-04-01

    Full Text Available In this work, DAE Tools modelling, simulation and optimisation software, its programming paradigms and main features are presented. The current approaches to mathematical modelling such as the use of modelling languages and general-purpose programming languages are analysed. The common set of capabilities required by the typical simulation software are discussed, and the shortcomings of the current approaches recognised. A new hybrid approach is introduced, and the modelling languages and the hybrid approach are compared in terms of the grammar, compiler, parser and interpreter requirements, maintainability and portability. The most important characteristics of the new approach are discussed, such as: (1 support for the runtime model generation; (2 support for the runtime simulation set-up; (3 support for complex runtime operating procedures; (4 interoperability with the third party software packages (i.e. NumPy/SciPy; (5 suitability for embedding and use as a web application or software as a service; and (6 code-generation, model exchange and co-simulation capabilities. The benefits of an equation-based approach to modelling, implemented in a fourth generation object-oriented general purpose programming language such as Python are discussed. The architecture and the software implementation details as well as the type of problems that can be solved using DAE Tools software are described. Finally, some applications of the software at different levels of abstraction are presented, and its embedding capabilities and suitability for use as a software as a service is demonstrated.

  12. OptFlux: an open-source software platform for in silico metabolic engineering.

    Science.gov (United States)

    Rocha, Isabel; Maia, Paulo; Evangelista, Pedro; Vilaça, Paulo; Soares, Simão; Pinto, José P; Nielsen, Jens; Patil, Kiran R; Ferreira, Eugénio C; Rocha, Miguel

    2010-04-19

    Over the last few years a number of methods have been proposed for the phenotype simulation of microorganisms under different environmental and genetic conditions. These have been used as the basis to support the discovery of successful genetic modifications of the microbial metabolism to address industrial goals. However, the use of these methods has been restricted to bioinformaticians or other expert researchers. The main aim of this work is, therefore, to provide a user-friendly computational tool for Metabolic Engineering applications. OptFlux is an open-source and modular software aimed at being the reference computational application in the field. It is the first tool to incorporate strain optimization tasks, i.e., the identification of Metabolic Engineering targets, using Evolutionary Algorithms/Simulated Annealing metaheuristics or the previously proposed OptKnock algorithm. It also allows the use of stoichiometric metabolic models for (i) phenotype simulation of both wild-type and mutant organisms, using the methods of Flux Balance Analysis, Minimization of Metabolic Adjustment or Regulatory on/off Minimization of Metabolic flux changes, (ii) Metabolic Flux Analysis, computing the admissible flux space given a set of measured fluxes, and (iii) pathway analysis through the calculation of Elementary Flux Modes. OptFlux also contemplates several methods for model simplification and other pre-processing operations aimed at reducing the search space for optimization algorithms. The software supports importing/exporting to several flat file formats and it is compatible with the SBML standard. OptFlux has a visualization module that allows the analysis of the model structure that is compatible with the layout information of Cell Designer, allowing the superimposition of simulation results with the model graph. The OptFlux software is freely available, together with documentation and other resources, thus bridging the gap from research in strain optimization

  13. Clinical records anonymisation and text extraction (CRATE): an open-source software system.

    Science.gov (United States)

    Cardinal, Rudolf N

    2017-04-26

    Electronic medical records contain information of value for research, but contain identifiable and often highly sensitive confidential information. Patient-identifiable information cannot in general be shared outside clinical care teams without explicit consent, but anonymisation/de-identification allows research uses of clinical data without explicit consent. This article presents CRATE (Clinical Records Anonymisation and Text Extraction), an open-source software system with separable functions: (1) it anonymises or de-identifies arbitrary relational databases, with sensitivity and precision similar to previous comparable systems; (2) it uses public secure cryptographic methods to map patient identifiers to research identifiers (pseudonyms); (3) it connects relational databases to external tools for natural language processing; (4) it provides a web front end for research and administrative functions; and (5) it supports a specific model through which patients may consent to be contacted about research. Creation and management of a research database from sensitive clinical records with secure pseudonym generation, full-text indexing, and a consent-to-contact process is possible and practical using entirely free and open-source software.

  14. PASSIM – an open source software system for managing information in biomedical studies

    Directory of Open Access Journals (Sweden)

    Neogi Sudeshna

    2007-02-01

    Full Text Available Abstract Background One of the crucial aspects of day-to-day laboratory information management is collection, storage and retrieval of information about research subjects and biomedical samples. An efficient link between sample data and experiment results is absolutely imperative for a successful outcome of a biomedical study. Currently available software solutions are largely limited to large-scale, expensive commercial Laboratory Information Management Systems (LIMS. Acquiring such LIMS indeed can bring laboratory information management to a higher level, but often implies sufficient investment of time, effort and funds, which are not always available. There is a clear need for lightweight open source systems for patient and sample information management. Results We present a web-based tool for submission, management and retrieval of sample and research subject data. The system secures confidentiality by separating anonymized sample information from individuals' records. It is simple and generic, and can be customised for various biomedical studies. Information can be both entered and accessed using the same web interface. User groups and their privileges can be defined. The system is open-source and is supplied with an on-line tutorial and necessary documentation. It has proven to be successful in a large international collaborative project. Conclusion The presented system closes the gap between the need and the availability of lightweight software solutions for managing information in biomedical studies involving human research subjects.

  15. TRANSIT--A Software Tool for Himar1 TnSeq Analysis.

    Directory of Open Access Journals (Sweden)

    Michael A DeJesus

    2015-10-01

    Full Text Available TnSeq has become a popular technique for determining the essentiality of genomic regions in bacterial organisms. Several methods have been developed to analyze the wealth of data that has been obtained through TnSeq experiments. We developed a tool for analyzing Himar1 TnSeq data called TRANSIT. TRANSIT provides a graphical interface to three different statistical methods for analyzing TnSeq data. These methods cover a variety of approaches capable of identifying essential genes in individual datasets as well as comparative analysis between conditions. We demonstrate the utility of this software by analyzing TnSeq datasets of M. tuberculosis grown on glycerol and cholesterol. We show that TRANSIT can be used to discover genes which have been previously implicated for growth on these carbon sources. TRANSIT is written in Python, and thus can be run on Windows, OSX and Linux platforms. The source code is distributed under the GNU GPL v3 license and can be obtained from the following GitHub repository: https://github.com/mad-lab/transit.

  16. EUV source development for high-volume chip manufacturing tools

    Science.gov (United States)

    Stamm, Uwe; Yoshioka, Masaki; Kleinschmidt, Jürgen; Ziener, Christian; Schriever, Guido; Schürmann, Max C.; Hergenhan, Guido; Borisov, Vladimir M.

    2007-03-01

    Xenon-fueled gas discharge produced plasma (DPP) sources were integrated into Micro Exposure Tools already in 2004. Operation of these tools in a research environment gave early learning for the development of EUV sources for Alpha and Beta-Tools. Further experiments with these sources were performed for basic understanding on EUV source technology and limits, especially the achievable power and reliability. The intermediate focus power of Alpha-Tool sources under development is measured to values above 10 W. Debris mitigation schemes were successfully integrated into the sources leading to reasonable collector mirror lifetimes with target of 10 billion pulses due to the effective debris flux reduction. Source collector mirrors, which withstand the radiation and temperature load of Xenon-fueled sources, have been developed in cooperation with MediaLario Technologies to support intermediate focus power well above 10 W. To fulfill the requirements for High Volume chip Manufacturing (HVM) applications, a new concept for HVM EUV sources with higher efficiency has been developed at XTREME technologies. The discharge produced plasma (DPP) source concept combines the use of rotating disk electrodes (RDE) with laser exited droplet targets. The source concept is called laser assisted droplet RDE source. The fuel of these sources has been selected to be Tin. The conversion efficiency achieved with the laser assisted droplet RDE source is 2-3x higher compared to Xenon. Very high pulse energies well above 200 mJ / 2π sr have been measured with first prototypes of the laser assisted droplet RDE source. If it is possible to maintain these high pulse energies at higher repetition rates a 10 kHz EUV source could deliver 2000 W / 2π sr. According to the first experimental data the new concept is expected to be scalable to an intermediate focus power on the 300 W level.

  17. Evaluation of open source data mining software packages

    Science.gov (United States)

    Bonnie Ruefenacht; Greg Liknes; Andrew J. Lister; Haans Fisk; Dan Wendt

    2009-01-01

    Since 2001, the USDA Forest Service (USFS) has used classification and regression-tree technology to map USFS Forest Inventory and Analysis (FIA) biomass, forest type, forest type groups, and National Forest vegetation. This prior work used Cubist/See5 software for the analyses. The objective of this project, sponsored by the Remote Sensing Steering Committee (RSSC),...

  18. A tool to include gamma analysis software into a quality assurance program.

    Science.gov (United States)

    Agnew, Christina E; McGarry, Conor K

    2016-03-01

    To provide a tool to enable gamma analysis software algorithms to be included in a quality assurance (QA) program. Four image sets were created comprising two geometric images to independently test the distance to agreement (DTA) and dose difference (DD) elements of the gamma algorithm, a clinical step and shoot IMRT field and a clinical VMAT arc. The images were analysed using global and local gamma analysis with 2 in-house and 8 commercially available software encompassing 15 software versions. The effect of image resolution on gamma pass rates was also investigated. All but one software accurately calculated the gamma passing rate for the geometric images. Variation in global gamma passing rates of 1% at 3%/3mm and over 2% at 1%/1mm was measured between software and software versions with analysis of appropriately sampled images. This study provides a suite of test images and the gamma pass rates achieved for a selection of commercially available software. This image suite will enable validation of gamma analysis software within a QA program and provide a frame of reference by which to compare results reported in the literature from various manufacturers and software versions. Copyright © 2015. Published by Elsevier Ireland Ltd.

  19. Integrating open-source software applications to build molecular dynamics systems.

    Science.gov (United States)

    Allen, Bruce M; Predecki, Paul K; Kumosa, Maciej

    2014-04-05

    Three open-source applications, NanoEngineer-1, packmol, and mis2lmp are integrated using an open-source file format to quickly create molecular dynamics (MD) cells for simulation. The three software applications collectively make up the open-source software (OSS) suite known as MD Studio (MDS). The software is validated through software engineering practices and is verified through simulation of the diglycidyl ether of bisphenol-a and isophorone diamine (DGEBA/IPD) system. Multiple simulations are run using the MDS software to create MD cells, and the data generated are used to calculate density, bulk modulus, and glass transition temperature of the DGEBA/IPD system. Simulation results compare well with published experimental and numerical results. The MDS software prototype confirms that OSS applications can be analyzed against real-world research requirements and integrated to create a new capability. Copyright © 2014 Wiley Periodicals, Inc.

  20. Rapid Open Source GPS software development for modern embedded systems:using the GPSTk with the Gumstix

    OpenAIRE

    Salazar Hernández, Dagoberto José; Hernández Pajares, Manuel; Juan Zornoza, José Miguel; Sanz Subirana, Jaume

    2006-01-01

    This work shows how the combination of GPS Open Source Software (GOSS) and advanced full function miniature computers (FFMC) allows rapid development, implementation and testing of advanced embedded GNSS data processing applications in a flexible way. In this regard, our tools of choice are the “GPS Toolkit” (GPSTk), and a modern, high power embedded platform such as the “Gumstix” computer boards. Peer Reviewed

  1. A computer-aided software-tool for sustainable process synthesis-intensification

    DEFF Research Database (Denmark)

    Kumar Tula, Anjan; Babi, Deenesh K.; Bottlaender, Jack

    2017-01-01

    and determine within the design space, the more sustainable processes. In this paper, an integrated computer-aided software-tool that searches the design space for hybrid/intensified more sustainable process options is presented. Embedded within the software architecture are process synthesis...... operations as well as reported hybrid/intensified unit operations is large and can be difficult to manually navigate in order to determine the best process flowsheet for the production of a desired chemical product. Therefore, it is beneficial to utilize computer-aided methods and tools to enumerate, analyze...... constraints while also matching the design targets, they are therefore more sustainable than the base case. The application of the software-tool to the production of biodiesel is presented, highlighting the main features of the computer-aided, multi-stage, multi-scale methods that are able to determine more...

  2. A software tool for design of process monitoring and analysis systems

    DEFF Research Database (Denmark)

    Singh, Ravendra; Gernaey, Krist; Gani, Rafiqul

    2009-01-01

    A well designed process monitoring and analysis system is necessary to consistently achieve any predefined end product quality. Systematic computer aided methods and tools provide the means to design the necessary process monitoring and analysis systems and/or to validate any existing monitoring...... and analysis system. A software to achieve this has been developed. Two developed supporting tools for the design, a knowledge base (consisting of the process knowledge as well as the knowledge on measurement methods & tools) and a model library (consisting of the process operational models) have been extended...... rigorously and integrated with the user interface, which made the software more generic and applicable to a wide range of problems. The software for the design of a process monitoring and analysis system is presented and illustrated with a tablet manufacturing process example....

  3. Managing the Testing Process Practical Tools and Techniques for Managing Hardware and Software Testing

    CERN Document Server

    Black, Rex

    2011-01-01

    New edition of one of the most influential books on managing software and hardware testing In this new edition of his top-selling book, Rex Black walks you through the steps necessary to manage rigorous testing programs of hardware and software. The preeminent expert in his field, Mr. Black draws upon years of experience as president of both the International and American Software Testing Qualifications boards to offer this extensive resource of all the standards, methods, and tools you'll need. The book covers core testing concepts and thoroughly examines the best test management practices

  4. KEEL 3.0: An Open Source Software for Multi-Stage Analysis in Data Mining

    Directory of Open Access Journals (Sweden)

    Isaac Triguero

    2017-01-01

    Full Text Available This paper introduces the 3rd major release of the KEEL Software. KEEL is an open source Java framework (GPLv3 license that provides a number of modules to perform a wide variety of data mining tasks. It includes tools to perform data management, design of multiple kind of experiments, statistical analyses, etc. This framework also contains KEEL-dataset, a data repository for multiple learning tasks featuring data partitions and algorithmsr results over these problems. In this work, we describe the most recent components added to KEEL 3.0, including new modules for semi-supervised learning, multi-instance learning, imbalanced classification and subgroup discovery. In addition, a new interface in R has been incorporated to execute algorithms included in KEEL. These new features greatly improve the versatility of KEEL to deal with more modern data mining problems.

  5. DAISY: a new software tool to test global identifiability of biological and physiological systems.

    Science.gov (United States)

    Bellu, Giuseppina; Saccomani, Maria Pia; Audoly, Stefania; D'Angiò, Leontina

    2007-10-01

    A priori global identifiability is a structural property of biological and physiological models. It is considered a prerequisite for well-posed estimation, since it concerns the possibility of recovering uniquely the unknown model parameters from measured input-output data, under ideal conditions (noise-free observations and error-free model structure). Of course, determining if the parameters can be uniquely recovered from observed data is essential before investing resources, time and effort in performing actual biomedical experiments. Many interesting biological models are nonlinear but identifiability analysis for nonlinear system turns out to be a difficult mathematical problem. Different methods have been proposed in the literature to test identifiability of nonlinear models but, to the best of our knowledge, so far no software tools have been proposed for automatically checking identifiability of nonlinear models. In this paper, we describe a software tool implementing a differential algebra algorithm to perform parameter identifiability analysis for (linear and) nonlinear dynamic models described by polynomial or rational equations. Our goal is to provide the biological investigator a completely automatized software, requiring minimum prior knowledge of mathematical modelling and no in-depth understanding of the mathematical tools. The DAISY (Differential Algebra for Identifiability of SYstems) software will potentially be useful in biological modelling studies, especially in physiology and clinical medicine, where research experiments are particularly expensive and/or difficult to perform. Practical examples of use of the software tool DAISY are presented. DAISY is available at the web site http://www.dei.unipd.it/~pia/.

  6. Design and implementation of a software tool intended for simulation and test of real time codes

    International Nuclear Information System (INIS)

    Le Louarn, C.

    1986-09-01

    The objective of real time software testing is to show off processing errors and unobserved functional requirements or timing constraints in a code. In the perspective of safety analysis of nuclear equipments of power plants testing should be carried independently from the physical process (which is not generally available), and because casual hardware failures must be considered. We propose here a simulation and test tool, integrally software, with large interactive possibilities for testing assembly code running on microprocessor. The OST (outil d'aide a la simulation et au Test de logiciels temps reel) simulates code execution and hardware or software environment behaviour. Test execution is closely monitored and many useful informations are automatically saved. The present thesis work details, after exposing methods and tools dedicated to real time software, the OST system. We show the internal mechanisms and objects of the system: particularly ''events'' (which describe evolutions of the system under test) and mnemonics (which describe the variables). Then, we detail the interactive means available to the user for constructing the test data and the environment of the tested software. Finally, a prototype implementation is presented along with the results of the tests carried out. This demonstrates the many advantages of the use of an automatic tool over a manual investigation. As a conclusion, further developments, nececessary to complete the final tool are rewieved [fr

  7. Towards early software reliability prediction for computer forensic tools (case study).

    Science.gov (United States)

    Abu Talib, Manar

    2016-01-01

    Versatility, flexibility and robustness are essential requirements for software forensic tools. Researchers and practitioners need to put more effort into assessing this type of tool. A Markov model is a robust means for analyzing and anticipating the functioning of an advanced component based system. It is used, for instance, to analyze the reliability of the state machines of real time reactive systems. This research extends the architecture-based software reliability prediction model for computer forensic tools, which is based on Markov chains and COSMIC-FFP. Basically, every part of the computer forensic tool is linked to a discrete time Markov chain. If this can be done, then a probabilistic analysis by Markov chains can be performed to analyze the reliability of the components and of the whole tool. The purposes of the proposed reliability assessment method are to evaluate the tool's reliability in the early phases of its development, to improve the reliability assessment process for large computer forensic tools over time, and to compare alternative tool designs. The reliability analysis can assist designers in choosing the most reliable topology for the components, which can maximize the reliability of the tool and meet the expected reliability level specified by the end-user. The approach of assessing component-based tool reliability in the COSMIC-FFP context is illustrated with the Forensic Toolkit Imager case study.

  8. An open-source optimization tool for solar home systems: A case study in Namibia

    International Nuclear Information System (INIS)

    Campana, Pietro Elia; Holmberg, Aksel; Pettersson, Oscar; Klintenberg, Patrik; Hangula, Abraham; Araoz, Fabian Benavente; Zhang, Yang; Stridh, Bengt; Yan, Jinyue

    2016-01-01

    Highlights: • An open-source optimization tool for solar home systems (SHSs) design is developed. • The optimization tool is written in MS Excel-VBA. • The optimization tool is validated with a commercial and open-source software. • The optimization tool has the potential of improving future SHS installations. - Abstract: Solar home systems (SHSs) represent a viable technical solution for providing electricity to households and improving standard of living conditions in areas not reached by the national grid or local grids. For this reason, several rural electrification programmes in developing countries, including Namibia, have been relying on SHSs to electrify rural off-grid communities. However, the limited technical know-how of service providers, often resulting in over- or under-sized SHSs, is an issue that has to be solved to avoid dissatisfaction of SHSs’ users. The solution presented here is to develop an open-source software that service providers can use to optimally design SHSs components based on the specific electricity requirements of the end-user. The aim of this study is to develop and validate an optimization model written in MS Excel-VBA which calculates the optimal SHSs components capacities guaranteeing the minimum costs and the maximum system reliability. The results obtained with the developed tool showed good agreement with a commercial software and a computational code used in research activities. When applying the developed optimization tool to existing systems, the results identified that several components were incorrectly sized. The tool has thus the potentials of improving future SHSs installations, contributing to increasing satisfaction of end-users.

  9. Analyzing the State of Static Analysis : A Large-Scale Evaluation in Open Source Software

    NARCIS (Netherlands)

    Beller, M.; Bholanath, R.; McIntosh, S.; Zaidman, A.E.

    2016-01-01

    The use of automatic static analysis has been a software engineering best practice for decades. However, we still do not know a lot about its use in real-world software projects: How prevalent is the use of Automated Static Analysis Tools (ASATs) such as FindBugs and JSHint? How do developers use

  10. A software tool for simulation of surfaces generated by ball nose end milling

    DEFF Research Database (Denmark)

    Bissacco, Giuliano

    2004-01-01

    , for prediction of surface topography of ball nose end milled surfaces, was developed. Such software tool is based on a simplified model of the ideal tool motion and neglects the effects due to run-out, static and dynamic deflections and error motions, but has the merit of generating in output a file in a format...... readable by a surface processor software (SPIP [2]), for calculation of a number of surface roughness parameters. In the next paragraph a description of the basic features of ball nose end milled surfaces is given, while in paragraph 3 the model is described....

  11. ROCKETSHIP: a flexible and modular software tool for the planning, processing and analysis of dynamic MRI studies

    International Nuclear Information System (INIS)

    Barnes, Samuel R.; Ng, Thomas S. C.; Santa-Maria, Naomi; Montagne, Axel; Zlokovic, Berislav V.; Jacobs, Russell E.

    2015-01-01

    Dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI) is a promising technique to characterize pathology and evaluate treatment response. However, analysis of DCE-MRI data is complex and benefits from concurrent analysis of multiple kinetic models and parameters. Few software tools are currently available that specifically focuses on DCE-MRI analysis with multiple kinetic models. Here, we developed ROCKETSHIP, an open-source, flexible and modular software for DCE-MRI analysis. ROCKETSHIP incorporates analyses with multiple kinetic models, including data-driven nested model analysis. ROCKETSHIP was implemented using the MATLAB programming language. Robustness of the software to provide reliable fits using multiple kinetic models is demonstrated using simulated data. Simulations also demonstrate the utility of the data-driven nested model analysis. Applicability of ROCKETSHIP for both preclinical and clinical studies is shown using DCE-MRI studies of the human brain and a murine tumor model. A DCE-MRI software suite was implemented and tested using simulations. Its applicability to both preclinical and clinical datasets is shown. ROCKETSHIP was designed to be easily accessible for the beginner, but flexible enough for changes or additions to be made by the advanced user as well. The availability of a flexible analysis tool will aid future studies using DCE-MRI. A public release of ROCKETSHIP is available at (https://github.com/petmri/ROCKETSHIP)

  12. GraphCrunch 2: Software tool for network modeling, alignment and clustering.

    Science.gov (United States)

    Kuchaiev, Oleksii; Stevanović, Aleksandar; Hayes, Wayne; Pržulj, Nataša

    2011-01-19

    algorithm for clustering nodes within a network based solely on their topological similarities. Using GraphCrunch 2, we demonstrate that eukaryotic and viral PPI networks may belong to different graph model families and show that topology-based clustering can reveal important functional similarities between proteins within yeast and human PPI networks. GraphCrunch 2 is a software tool that implements the latest research on biological network analysis. It parallelizes computationally intensive tasks to fully utilize the potential of modern multi-core CPUs. It is open-source and freely available for research use. It runs under the Windows and Linux platforms.

  13. GraphCrunch 2: Software tool for network modeling, alignment and clustering

    Directory of Open Access Journals (Sweden)

    Hayes Wayne

    2011-01-01

    existing tool. Finally, GraphCruch 2 implements an algorithm for clustering nodes within a network based solely on their topological similarities. Using GraphCrunch 2, we demonstrate that eukaryotic and viral PPI networks may belong to different graph model families and show that topology-based clustering can reveal important functional similarities between proteins within yeast and human PPI networks. Conclusions GraphCrunch 2 is a software tool that implements the latest research on biological network analysis. It parallelizes computationally intensive tasks to fully utilize the potential of modern multi-core CPUs. It is open-source and freely available for research use. It runs under the Windows and Linux platforms.

  14. A Business Case Study of Open Source Software

    Science.gov (United States)

    2001-07-01

    include cost or price, availability or multiple distribution sources, and popularity or brand /reputation. While both the commercial and government...availability, quality, security, management, scalability, brand /reputation, and service and support. 1 2 3 4 5 Pr ice Re lia bil ity Pe rfo rm an ce Av ail...source community. Open source, and Linux in particular, is often regarded as the heroic underdog . Linux has been touted as a “Windows killer.”44 Over

  15. An open source software for analysis of dynamic contrast enhanced magnetic resonance images: UMMPerfusion revisited.

    Science.gov (United States)

    Zöllner, Frank G; Daab, Markus; Sourbron, Steven P; Schad, Lothar R; Schoenberg, Stefan O; Weisser, Gerald

    2016-01-14

    Perfusion imaging has become an important image based tool to derive the physiological information in various applications, like tumor diagnostics and therapy, stroke, (cardio-) vascular diseases, or functional assessment of organs. However, even after 20 years of intense research in this field, perfusion imaging still remains a research tool without a broad clinical usage. One problem is the lack of standardization in technical aspects which have to be considered for successful quantitative evaluation; the second problem is a lack of tools that allow a direct integration into the diagnostic workflow in radiology. Five compartment models, namely, a one compartment model (1CP), a two compartment exchange (2CXM), a two compartment uptake model (2CUM), a two compartment filtration model (2FM) and eventually the extended Toft's model (ETM) were implemented as plugin for the DICOM workstation OsiriX. Moreover, the plugin has a clean graphical user interface and provides means for quality management during the perfusion data analysis. Based on reference test data, the implementation was validated against a reference implementation. No differences were found in the calculated parameters. We developed open source software to analyse DCE-MRI perfusion data. The software is designed as plugin for the DICOM Workstation OsiriX. It features a clean GUI and provides a simple workflow for data analysis while it could also be seen as a toolbox providing an implementation of several recent compartment models to be applied in research tasks. Integration into the infrastructure of a radiology department is given via OsiriX. Results can be saved automatically and reports generated automatically during data analysis ensure certain quality control.

  16. An open source software for analysis of dynamic contrast enhanced magnetic resonance images: UMMPerfusion revisited

    International Nuclear Information System (INIS)

    Zöllner, Frank G.; Daab, Markus; Sourbron, Steven P.; Schad, Lothar R.; Schoenberg, Stefan O.; Weisser, Gerald

    2016-01-01

    Perfusion imaging has become an important image based tool to derive the physiological information in various applications, like tumor diagnostics and therapy, stroke, (cardio-) vascular diseases, or functional assessment of organs. However, even after 20 years of intense research in this field, perfusion imaging still remains a research tool without a broad clinical usage. One problem is the lack of standardization in technical aspects which have to be considered for successful quantitative evaluation; the second problem is a lack of tools that allow a direct integration into the diagnostic workflow in radiology. Five compartment models, namely, a one compartment model (1CP), a two compartment exchange (2CXM), a two compartment uptake model (2CUM), a two compartment filtration model (2FM) and eventually the extended Toft’s model (ETM) were implemented as plugin for the DICOM workstation OsiriX. Moreover, the plugin has a clean graphical user interface and provides means for quality management during the perfusion data analysis. Based on reference test data, the implementation was validated against a reference implementation. No differences were found in the calculated parameters. We developed open source software to analyse DCE-MRI perfusion data. The software is designed as plugin for the DICOM Workstation OsiriX. It features a clean GUI and provides a simple workflow for data analysis while it could also be seen as a toolbox providing an implementation of several recent compartment models to be applied in research tasks. Integration into the infrastructure of a radiology department is given via OsiriX. Results can be saved automatically and reports generated automatically during data analysis ensure certain quality control

  17. Integrated structural analysis tool using the linear matching method part 1 – Software development

    International Nuclear Information System (INIS)

    Ure, James; Chen, Haofeng; Tipping, David

    2014-01-01

    A number of direct methods based upon the Linear Matching Method (LMM) framework have been developed to address structural integrity issues for components subjected to cyclic thermal and mechanical load conditions. This paper presents a new integrated structural analysis tool using the LMM framework for the assessment of load carrying capacity, shakedown limit, ratchet limit and steady state cyclic response of structures. First, the development of the LMM for the evaluation of design limits in plasticity is introduced. Second, preliminary considerations for the development of the LMM into a tool which can be used on a regular basis by engineers are discussed. After the re-structuring of the LMM subroutines for multiple central processing unit (CPU) solution, the LMM software tool for the assessment of design limits in plasticity is implemented by developing an Abaqus CAE plug-in with graphical user interfaces. Further demonstration of this new LMM analysis tool including practical application and verification is presented in an accompanying paper. - Highlights: • A new structural analysis tool using the Linear Matching Method (LMM) is developed. • The software tool is able to evaluate the design limits in plasticity. • Able to assess limit load, shakedown, ratchet limit and steady state cyclic response. • Re-structuring of the LMM subroutines for multiple CPU solution is conducted. • The software tool is implemented by developing an Abaqus CAE plug-in with GUI

  18. iPhone Open Application Development Write Native Applications Using the Open Source Tool Chain

    CERN Document Server

    Zdziarski, Jonathan

    2008-01-01

    Developers everywhere are eager to create applications for the iPhone, and many of them prefer the open source, community-developed tool chain to Apple's own toolkit. This new edition of iPhone Open Application Development covers the latest version of the open toolkit -- now updated for Apple's iPhone 2.x software and iPhone 3G -- and explains in clear language how to create applications using Objective-C and the iPhone API.

  19. Common characteristics of open source software development and applicability for drug discovery: a systematic review.

    Science.gov (United States)

    Ardal, Christine; Alstadsæter, Annette; Røttingen, John-Arne

    2011-09-28

    Innovation through an open source model has proven to be successful for software development. This success has led many to speculate if open source can be applied to other industries with similar success. We attempt to provide an understanding of open source software development characteristics for researchers, business leaders and government officials who may be interested in utilizing open source innovation in other contexts and with an emphasis on drug discovery. A systematic review was performed by searching relevant, multidisciplinary databases to extract empirical research regarding the common characteristics and barriers of initiating and maintaining an open source software development project. Common characteristics to open source software development pertinent to open source drug discovery were extracted. The characteristics were then grouped into the areas of participant attraction, management of volunteers, control mechanisms, legal framework and physical constraints. Lastly, their applicability to drug discovery was examined. We believe that the open source model is viable for drug discovery, although it is unlikely that it will exactly follow the form used in software development. Hybrids will likely develop that suit the unique characteristics of drug discovery. We suggest potential motivations for organizations to join an open source drug discovery project. We also examine specific differences between software and medicines, specifically how the need for laboratories and physical goods will impact the model as well as the effect of patents.

  20. Proceedings of the Workshop on software tools for distributed intelligent control systems

    Energy Technology Data Exchange (ETDEWEB)

    Herget, C.J. (ed.)

    1990-09-01

    The Workshop on Software Tools for Distributed Intelligent Control Systems was organized by Lawrence Livermore National Laboratory for the United States Army Headquarters Training and Doctrine Command and the Defense Advanced Research Projects Agency. The goals of the workshop were to the identify the current state of the art in tools which support control systems engineering design and implementation, identify research issues associated with writing software tools which would provide a design environment to assist engineers in multidisciplinary control design and implementation, formulate a potential investment strategy to resolve the research issues and develop public domain code which can form the core of more powerful engineering design tools, and recommend test cases to focus the software development process and test associated performance metrics. Recognizing that the development of software tools for distributed intelligent control systems will require a multidisciplinary effort, experts in systems engineering, control systems engineering, and compute science were invited to participate in the workshop. In particular, experts who could address the following topics were selected: operating systems, engineering data representation and manipulation, emerging standards for manufacturing data, mathematical foundations, coupling of symbolic and numerical computation, user interface, system identification, system representation at different levels of abstraction, system specification, system design, verification and validation, automatic code generation, and integration of modular, reusable code.

  1. Three Software Tools for Viewing Sectional Planes, Volume Models, and Surface Models of a Cadaver Hand.

    Science.gov (United States)

    Chung, Beom Sun; Chung, Min Suk; Shin, Byeong Seok; Kwon, Koojoo

    2018-02-19

    The hand anatomy, including the complicated hand muscles, can be grasped by using computer-assisted learning tools with high quality two-dimensional images and three-dimensional models. The purpose of this study was to present up-to-date software tools that promote learning of stereoscopic morphology of the hand. On the basis of horizontal sectioned images and outlined images of a male cadaver, vertical planes, volume models, and surface models were elaborated. Software to browse pairs of the sectioned and outlined images in orthogonal planes and software to peel and rotate the volume models, as well as a portable document format (PDF) file to select and rotate the surface models, were produced. All of the software tools were downloadable free of charge and usable off-line. The three types of tools for viewing multiple aspects of the hand could be adequately employed according to individual needs. These new tools involving the realistic images of a cadaver and the diverse functions are expected to improve comprehensive knowledge of the hand shape. © 2018 The Korean Academy of Medical Sciences.

  2. COMPUTER TOOLS OF DYNAMIC MATHEMATIC SOFTWARE AND METHODICAL PROBLEMS OF THEIR USE

    Directory of Open Access Journals (Sweden)

    Olena V. Semenikhina

    2014-08-01

    Full Text Available The article presents results of analyses of standard computer tools of dynamic mathematic software which are used in solving tasks, and tools on which the teacher can support in the teaching of mathematics. Possibility of the organization of experimental investigating of mathematical objects on the basis of these tools and the wording of new tasks on the basis of the limited number of tools, fast automated check are specified. Some methodological comments on application of computer tools and methodological features of the use of interactive mathematical environments are presented. Problems, which are arising from the use of computer tools, among which rethinking forms and methods of training by teacher, the search for creative problems, the problem of rational choice of environment, check the e-solutions, common mistakes in the use of computer tools are selected.

  3. Use of a quality improvement tool, the prioritization matrix, to identify and prioritize triage software algorithm enhancement.

    Science.gov (United States)

    North, Frederick; Varkey, Prathiba; Caraballo, Pedro; Vsetecka, Darlene; Bartel, Greg

    2007-10-11

    Complex decision support software can require significant effort in maintenance and enhancement. A quality improvement tool, the prioritization matrix, was successfully used to guide software enhancement of algorithms in a symptom assessment call center.

  4. A multi-professional software tool for radiation therapy treatment verification

    International Nuclear Information System (INIS)

    Fox, Tim; Brooks, Ken; Davis, Larry

    1996-01-01

    Purpose: Verification of patient setup is important in conformal therapy because it provides a means of quality assurance for treatment delivery. Electronic portal imaging systems have led to software tools for performing digital comparison and verification of patient setup. However, these software tools are typically designed from a radiation oncologist's perspective even though treatment verification is a team effort involving oncologists, physicists, and therapists. A new software tool, Treatment Verification Tool (TVT), has been developed as an interactive, multi-professional application for reviewing and verifying treatment plan setup using conventional personal computers. This study will describe our approach to electronic treatment verification and demonstrate the features of TVT. Methods and Materials: TVT is an object-oriented software tool written in C++ using the PC-based Windows NT environment. The software utilizes the selection of a patient's images from a database. The software is also developed as a single window interface to reduce the amount of windows presented to the user. However, the user can select from four different possible views of the patient data. One of the views is side-by-side comparison of portal images (on-line portal images or digitized port film) with a prescription image (digitized simulator film or digitally reconstructed radiograph), and another view is a textual summary of the grades of each portal image. The grades of a portal image are assigned by a radiation oncologist using an evaluation method, and the physicists and therapists may only review these results. All users of TVT can perform image enhancement processes, measure distances, and perform semi-automated registration methods. An electronic dialogue can be established through a set of annotations and notes among the radiation oncologists and the technical staff. Results: Features of TVT include: 1) side-by-side comparison of portal images and a prescription image; 2

  5. GUM2DFT—a software tool for uncertainty evaluation of transient signals in the frequency domain

    International Nuclear Information System (INIS)

    Eichstädt, S; Wilkens, V

    2016-01-01

    The Fourier transform and its counterpart for discrete time signals, the discrete Fourier transform (DFT), are common tools in measurement science and application. Although almost every scientific software package offers ready-to-use implementations of the DFT, the propagation of uncertainties in line with the guide to the expression of uncertainty in measurement (GUM) is typically neglected. This is of particular importance in dynamic metrology, when input estimation is carried out by deconvolution in the frequency domain. To this end, we present the new open-source software tool GUM2DFT, which utilizes closed formulas for the efficient propagation of uncertainties for the application of the DFT, inverse DFT and input estimation in the frequency domain. It handles different frequency domain representations, accounts for autocorrelation and takes advantage of the symmetry inherent in the DFT result for real-valued time domain signals. All tools are presented in terms of examples which form part of the software package. GUM2DFT will foster GUM-compliant evaluation of uncertainty in a DFT-based analysis and enable metrologists to include uncertainty evaluations in their routine work. (paper)

  6. LevRad software as a tool to learn how to proceed with a shielding adequacy analysis

    International Nuclear Information System (INIS)

    Ferreira, C.C.; Oliveira, R.A.P.; Souza, S.O.

    2009-01-01

    Since the discovery of X-rays by Roentgen in 1895, several recommendations about the hazards from this radiation source have been published. About 14% of the total annual worldwide collective effective dose originates from the diagnostic X-rays examinations. In the UK, the collective effective dose from diagnostic X-rays examinations represents about 90% of the dose from all artificial sources. Diverse strategies have been performed, in an attempt to reduce the worldwide collective effective dose. We developed the LevRad software with the aim to teach how to proceed in an analysis of barriers shielding against diagnostic X-rays, to minimize the contact of the professional or the student with X-rays, and, finally, to prevent the consuming of the X-rays equipment. Some tests of the software were made, and preliminary results indicate that LevRad is efficient as a complementary tool for teaching professionals related to diagnostic radiology. In the case of the students, the advantage is perceived when using the software before the first contact with the X-rays equipment. The software introduces a solid knowledge about shielding adequacy analysis, prevents the consummation of the X-rays tube recurrent of the shielding adequacy analyses teaching and reduces the collective effective dose by avoiding the possible unnecessary exposures. (author)

  7. Development of software tools for 4-D visualization and quantitative analysis of PHITS simulation results

    International Nuclear Information System (INIS)

    Furutaka, Kazuyoshi

    2015-02-01

    A suite of software tools has been developed to facilitate the development of apparatus using a radiation transport simulation code PHITS by enabling 4D visualization (3D space and time) and quantitative analysis of so-called dieaway plots. To deliver useable tools as soon as possible, the existing software was utilized as much as possible; ParaView will be used for the 4D visualization of the results, whereas the analyses of dieaway plots will be done with ROOT toolkit with a tool named “diana”. To enable 4D visualization using ParaView, a group of tools (angel2vtk, DispDCAS1, CamPos) has been developed for the conversion of the data format to the one which can be read from ParaView and to ease the visualization. (author)

  8. Contingency Contractor Optimization Phase 3 Sustainment Software Design Document - Contingency Contractor Optimization Tool - Prototype

    Energy Technology Data Exchange (ETDEWEB)

    Durfee, Justin David; Frazier, Christopher Rawls; Bandlow, Alisa; Jones, Katherine A

    2016-05-01

    This document describes the final software design of the Contingency Contractor Optimization Tool - Prototype. Its purpose is to provide the overall architecture of the software and the logic behind this architecture. Documentation for the individual classes is provided in the application Javadoc. The Contingency Contractor Optimization project is intended to address Department of Defense mandates by delivering a centralized strategic planning tool that allows senior decision makers to quickly and accurately assess the impacts, risks, and mitigation strategies associated with utilizing contract support. The Contingency Contractor Optimization Tool - Prototype was developed in Phase 3 of the OSD ATL Contingency Contractor Optimization project to support strategic planning for contingency contractors. The planning tool uses a model to optimize the Total Force mix by minimizing the combined total costs for selected mission scenarios. The model optimizes the match of personnel types (military, DoD civilian, and contractors) and capabilities to meet mission requirements as effectively as possible, based on risk, cost, and other requirements.

  9. The Five 'R's' for Developing Trusted Software Frameworks to increase confidence in, and maximise reuse of, Open Source Software.

    Science.gov (United States)

    Fraser, Ryan; Gross, Lutz; Wyborn, Lesley; Evans, Ben; Klump, Jens

    2015-04-01

    Recent investments in HPC, cloud and Petascale data stores, have dramatically increased the scale and resolution that earth science challenges can now be tackled. These new infrastructures are highly parallelised and to fully utilise them and access the large volumes of earth science data now available, a new approach to software stack engineering needs to be developed. The size, complexity and cost of the new infrastructures mean any software deployed has to be reliable, trusted and reusable. Increasingly software is available via open source repositories, but these usually only enable code to be discovered and downloaded. As a user it is hard for a scientist to judge the suitability and quality of individual codes: rarely is there information on how and where codes can be run, what the critical dependencies are, and in particular, on the version requirements and licensing of the underlying software stack. A trusted software framework is proposed to enable reliable software to be discovered, accessed and then deployed on multiple hardware environments. More specifically, this framework will enable those who generate the software, and those who fund the development of software, to gain credit for the effort, IP, time and dollars spent, and facilitate quantification of the impact of individual codes. For scientific users, the framework delivers reviewed and benchmarked scientific software with mechanisms to reproduce results. The trusted framework will have five separate, but connected components: Register, Review, Reference, Run, and Repeat. 1) The Register component will facilitate discovery of relevant software from multiple open source code repositories. The registration process of the code should include information about licensing, hardware environments it can be run on, define appropriate validation (testing) procedures and list the critical dependencies. 2) The Review component is targeting on the verification of the software typically against a set of

  10. Investigating the effects of different factors on development of open source enterprise resources planning software packages

    Directory of Open Access Journals (Sweden)

    Mehdi Ghorbaninia

    2014-08-01

    Full Text Available This paper investigates the effects of different factors on development of open source enterprise resources planning software packages. The study designs a questionnaire in Likert scale and distributes it among 210 experts in the field of open source software package development. Cronbach alpha has been calculated as 0.93, which is well above the minimum acceptable level. Using Pearson correlation as well as stepwise regression analysis, the study determines three most important factors including fundamental issues, during and after implementation of open source software development. The study also determines a positive and strong relationship between fundamental factors and after implementation factors (r=0.9006, Sig. = 0.000.

  11. Review of Ground Systems Development and Operations (GSDO) Tools for Verifying Command and Control Software

    Science.gov (United States)

    Aguilar, Michael L.; Bonanne, Kevin H.; Favretto, Jeffrey A.; Jackson, Maddalena M.; Jones, Stephanie L.; Mackey, Ryan M.; Sarrel, Marc A.; Simpson, Kimberly A.

    2014-01-01

    The Exploration Systems Development (ESD) Standing Review Board (SRB) requested the NASA Engineering and Safety Center (NESC) conduct an independent review of the plan developed by Ground Systems Development and Operations (GSDO) for identifying models and emulators to create a tool(s) to verify their command and control software. The NESC was requested to identify any issues or weaknesses in the GSDO plan. This document contains the outcome of the NESC review.

  12. Sourcing Lifecycle for Software as a Service (SAAS)

    OpenAIRE

    Santy; Sikkel K.

    2014-01-01

    In recent years, Software as a Service (SaaS) has changed from curiosity caused concept to an accepted well known concept. A key advantage of this model is that, by cautious engineering, it is possible to influence economy of scale to decrease total cost of ownership compared to on-premises solutions. By using the guideline elaborated in this paper, companies which has interest in implementing SaaS will be led throughout the entire implementation cycle starting before the company decides to i...

  13. A multi-center study benchmarks software tools for label-free proteome quantification

    Science.gov (United States)

    Gillet, Ludovic C; Bernhardt, Oliver M.; MacLean, Brendan; Röst, Hannes L.; Tate, Stephen A.; Tsou, Chih-Chiang; Reiter, Lukas; Distler, Ute; Rosenberger, George; Perez-Riverol, Yasset; Nesvizhskii, Alexey I.; Aebersold, Ruedi; Tenzer, Stefan

    2016-01-01

    The consistent and accurate quantification of proteins by mass spectrometry (MS)-based proteomics depends on the performance of instruments, acquisition methods and data analysis software. In collaboration with the software developers, we evaluated OpenSWATH, SWATH2.0, Skyline, Spectronaut and DIA-Umpire, five of the most widely used software methods for processing data from SWATH-MS (sequential window acquisition of all theoretical fragment ion spectra), a method that uses data-independent acquisition (DIA) for label-free protein quantification. We analyzed high-complexity test datasets from hybrid proteome samples of defined quantitative composition acquired on two different MS instruments using different SWATH isolation windows setups. For consistent evaluation we developed LFQbench, an R-package to calculate metrics of precision and accuracy in label-free quantitative MS, and report the identification performance, robustness and specificity of each software tool. Our reference datasets enabled developers to improve their software tools. After optimization, all tools provided highly convergent identification and reliable quantification performance, underscoring their robustness for label-free quantitative proteomics. PMID:27701404

  14. A multicenter study benchmarks software tools for label-free proteome quantification.

    Science.gov (United States)

    Navarro, Pedro; Kuharev, Jörg; Gillet, Ludovic C; Bernhardt, Oliver M; MacLean, Brendan; Röst, Hannes L; Tate, Stephen A; Tsou, Chih-Chiang; Reiter, Lukas; Distler, Ute; Rosenberger, George; Perez-Riverol, Yasset; Nesvizhskii, Alexey I; Aebersold, Ruedi; Tenzer, Stefan

    2016-11-01

    Consistent and accurate quantification of proteins by mass spectrometry (MS)-based proteomics depends on the performance of instruments, acquisition methods and data analysis software. In collaboration with the software developers, we evaluated OpenSWATH, SWATH 2.0, Skyline, Spectronaut and DIA-Umpire, five of the most widely used software methods for processing data from sequential window acquisition of all theoretical fragment-ion spectra (SWATH)-MS, which uses data-independent acquisition (DIA) for label-free protein quantification. We analyzed high-complexity test data sets from hybrid proteome samples of defined quantitative composition acquired on two different MS instruments using different SWATH isolation-window setups. For consistent evaluation, we developed LFQbench, an R package, to calculate metrics of precision and accuracy in label-free quantitative MS and report the identification performance, robustness and specificity of each software tool. Our reference data sets enabled developers to improve their software tools. After optimization, all tools provided highly convergent identification and reliable quantification performance, underscoring their robustness for label-free quantitative proteomics.

  15. SaTool - a Software Tool for Structural Analysis of Complex Automation Systems

    DEFF Research Database (Denmark)

    Blanke, Mogens; Lorentzen, Torsten

    2006-01-01

    The paper introduces SaTool, a tool for structural analysis, the use of the Matlab (R)-based implementation is presented and special features are introduced, which were motivated by industrial users. Salient features of tool are presented, including the ability to specify the behavior of a complex...... system at a high level of functional abstraction, analyze single and multiple fault scenarios and automatically generate parity relations for diagnosis for the system in normal and impaired conditions. User interface and algorithmic details are presented....

  16. CACTI: free, open-source software for the sequential coding of behavioral interactions.

    Science.gov (United States)

    Glynn, Lisa H; Hallgren, Kevin A; Houck, Jon M; Moyers, Theresa B

    2012-01-01

    The sequential analysis of client and clinician speech in psychotherapy sessions can help to identify and characterize potential mechanisms of treatment and behavior change. Previous studies required coding systems that were time-consuming, expensive, and error-prone. Existing software can be expensive and inflexible, and furthermore, no single package allows for pre-parsing, sequential coding, and assignment of global ratings. We developed a free, open-source, and adaptable program to meet these needs: The CASAA Application for Coding Treatment Interactions (CACTI). Without transcripts, CACTI facilitates the real-time sequential coding of behavioral interactions using WAV-format audio files. Most elements of the interface are user-modifiable through a simple XML file, and can be further adapted using Java through the terms of the GNU Public License. Coding with this software yields interrater reliabilities comparable to previous methods, but at greatly reduced time and expense. CACTI is a flexible research tool that can simplify psychotherapy process research, and has the potential to contribute to the improvement of treatment content and delivery.

  17. Using McIDAS-V data analysis and visualization software as an educational tool for understanding the atmosphere

    Science.gov (United States)

    Achtor, T. H.; Rink, T.

    2010-12-01

    The University of Wisconsin’s Space Science and Engineering Center (SSEC) has been at the forefront in developing data analysis and visualization tools for environmental satellites and other geophysical data. The fifth generation of the Man-computer Interactive Data Access System (McIDAS-V) is Java-based, open-source, freely available software that operates on Linux, Macintosh and Windows systems. The software tools provide powerful new data manipulation and visualization capabilities that work with geophysical data in research, operational and educational environments. McIDAS-V provides unique capabilities to support innovative techniques for evaluating research results, teaching and training. McIDAS-V is based on three powerful software elements. VisAD is a Java library for building interactive, collaborative, 4 dimensional visualization and analysis tools. The Integrated Data Viewer (IDV) is a reference application based on the VisAD system and developed by the Unidata program that demonstrates the flexibility that is needed in this evolving environment, using a modern, object-oriented software design approach. The third tool, HYDRA, allows users to build, display and interrogate multi and hyperspectral environmental satellite data in powerful ways. The McIDAS-V software is being used for training and education in several settings. The McIDAS User Group provides training workshops at its annual meeting. Numerous online tutorials with training data sets have been developed to aid users in learning simple and more complex operations in McIDAS-V, all are available online. In a University of Wisconsin-Madison undergraduate course in Radar and Satellite Meteorology, McIDAS-V is used to create and deliver laboratory exercises using case study and real time data. At the high school level, McIDAS-V is used in several exercises in our annual Summer Workshop in Earth and Atmospheric Sciences to provide young scientists the opportunity to examine data with friendly and

  18. Programming heterogeneous MPSoCs tool flows to close the software productivity gap

    CERN Document Server

    Castrillón Mazo, Jerónimo

    2014-01-01

    This book provides embedded software developers with techniques for programmingheterogeneous Multi-Processor Systems-on-Chip (MPSoCs), capable of executing multiple applications simultaneously. It describes a set of algorithms and methodologies to narrow the software productivity gap, as well as an in-depth description of the underlying problems and challenges of today’s programming practices. The authors present four different tool flows: A parallelism extraction flow for applications writtenusing the C programming language, a mapping and scheduling flow for parallel applications, a special mapping flow for baseband applications in the context of Software Defined Radio (SDR) and a final flow for analyzing multiple applications at design time. The tool flows are evaluated on Virtual Platforms (VPs), which mimic different characteristics of state-of-the-art heterogeneous MPSoCs.   • Provides a novel set of algorithms and methodologies for programming heterogeneous Multi-Processor Systems-on-Chip (MPSoCs)...

  19. Using a Self-Administered Visual Basic Software Tool To Teach Psychological Concepts.

    Science.gov (United States)

    Strang, Harold R.; Sullivan, Amie K.; Schoeny, Zahrl G.

    2002-01-01

    Introduces LearningLinks, a Visual Basic software tool that allows teachers to create individualized learning modules that use constructivist and behavioral learning principles. Describes field testing of undergraduates at the University of Virginia that tested a module designed to improve understanding of the psychological concepts of…

  20. Review of software tools for design and analysis of large scale MRM proteomic datasets.

    Science.gov (United States)

    Colangelo, Christopher M; Chung, Lisa; Bruce, Can; Cheung, Kei-Hoi

    2013-06-15

    Selective or Multiple Reaction monitoring (SRM/MRM) is a liquid-chromatography (LC)/tandem-mass spectrometry (MS/MS) method that enables the quantitation of specific proteins in a sample by analyzing precursor ions and the fragment ions of their selected tryptic peptides. Instrumentation software has advanced to the point that thousands of transitions (pairs of primary and secondary m/z values) can be measured in a triple quadrupole instrument coupled to an LC, by a well-designed scheduling and selection of m/z windows. The design of a good MRM assay relies on the availability of peptide spectra from previous discovery-phase LC-MS/MS studies. The tedious aspect of manually developing and processing MRM assays involving thousands of transitions has spurred to development of software tools to automate this process. Software packages have been developed for project management, assay development, assay validation, data export, peak integration, quality assessment, and biostatistical analysis. No single tool provides a complete end-to-end solution, thus this article reviews the current state and discusses future directions of these software tools in order to enable researchers to combine these tools for a comprehensive targeted proteomics workflow. Copyright © 2013 The Authors. Published by Elsevier Inc. All rights reserved.