WorldWideScience

Sample records for source code freely

  1. Adaptive distributed source coding.

    Science.gov (United States)

    Varodayan, David; Lin, Yao-Chung; Girod, Bernd

    2012-05-01

    We consider distributed source coding in the presence of hidden variables that parameterize the statistical dependence among sources. We derive the Slepian-Wolf bound and devise coding algorithms for a block-candidate model of this problem. The encoder sends, in addition to syndrome bits, a portion of the source to the decoder uncoded as doping bits. The decoder uses the sum-product algorithm to simultaneously recover the source symbols and the hidden statistical dependence variables. We also develop novel techniques based on density evolution (DE) to analyze the coding algorithms. We experimentally confirm that our DE analysis closely approximates practical performance. This result allows us to efficiently optimize parameters of the algorithms. In particular, we show that the system performs close to the Slepian-Wolf bound when an appropriate doping rate is selected. We then apply our coding and analysis techniques to a reduced-reference video quality monitoring system and show a bit rate saving of about 75% compared with fixed-length coding.

  2. "Just Google It"--The Scope of Freely Available Information Sources for Doctoral Thesis Writing

    Science.gov (United States)

    Grigas, Vincas; Juzeniene, Simona; Velickaite, Jone

    2017-01-01

    Introduction: Recent developments in the field of scientific information resource provision lead us to the key research question, namely,what is the coverage of freely available information sources when writing doctoral theses, and whether the academic library can assume the leading role as a direct intermediator for information users. Method:…

  3. Distributed source coding of video

    DEFF Research Database (Denmark)

    Forchhammer, Søren; Van Luong, Huynh

    2015-01-01

    A foundation for distributed source coding was established in the classic papers of Slepian-Wolf (SW) [1] and Wyner-Ziv (WZ) [2]. This has provided a starting point for work on Distributed Video Coding (DVC), which exploits the source statistics at the decoder side offering shifting processing...... steps, conventionally performed at the video encoder side, to the decoder side. Emerging applications such as wireless visual sensor networks and wireless video surveillance all require lightweight video encoding with high coding efficiency and error-resilience. The video data of DVC schemes differ from...... the assumptions of SW and WZ distributed coding, e.g. by being correlated in time and nonstationary. Improving the efficiency of DVC coding is challenging. This paper presents some selected techniques to address the DVC challenges. Focus is put on pin-pointing how the decoder steps are modified to provide...

  4. LDGM Codes for Channel Coding and Joint Source-Channel Coding of Correlated Sources

    Directory of Open Access Journals (Sweden)

    Javier Garcia-Frias

    2005-05-01

    Full Text Available We propose a coding scheme based on the use of systematic linear codes with low-density generator matrix (LDGM codes for channel coding and joint source-channel coding of multiterminal correlated binary sources. In both cases, the structures of the LDGM encoder and decoder are shown, and a concatenated scheme aimed at reducing the error floor is proposed. Several decoding possibilities are investigated, compared, and evaluated. For different types of noisy channels and correlation models, the resulting performance is very close to the theoretical limits.

  5. Rate-adaptive BCH codes for distributed source coding

    DEFF Research Database (Denmark)

    Salmistraro, Matteo; Larsen, Knud J.; Forchhammer, Søren

    2013-01-01

    This paper considers Bose-Chaudhuri-Hocquenghem (BCH) codes for distributed source coding. A feedback channel is employed to adapt the rate of the code during the decoding process. The focus is on codes with short block lengths for independently coding a binary source X and decoding it given its...... strategies for improving the reliability of the decoded result are analyzed, and methods for estimating the performance are proposed. In the analysis, noiseless feedback and noiseless communication are assumed. Simulation results show that rate-adaptive BCH codes achieve better performance than low...... correlated side information Y. The proposed codes have been analyzed in a high-correlation scenario, where the marginal probability of each symbol, Xi in X, given Y is highly skewed (unbalanced). Rate-adaptive BCH codes are presented and applied to distributed source coding. Adaptive and fixed checking...

  6. Multiple LDPC decoding for distributed source coding and video coding

    DEFF Research Database (Denmark)

    Forchhammer, Søren; Luong, Huynh Van; Huang, Xin

    2011-01-01

    Distributed source coding (DSC) is a coding paradigm for systems which fully or partly exploit the source statistics at the decoder to reduce the computational burden at the encoder. Distributed video coding (DVC) is one example. This paper considers the use of Low Density Parity Check Accumulate...... (LDPCA) codes in a DSC scheme with feed-back. To improve the LDPC coding performance in the context of DSC and DVC, while retaining short encoder blocks, this paper proposes multiple parallel LDPC decoding. The proposed scheme passes soft information between decoders to enhance performance. Experimental...

  7. Joint source-channel coding using variable length codes

    NARCIS (Netherlands)

    Balakirsky, V.B.

    2001-01-01

    We address the problem of joint source-channel coding when variable-length codes are used for information transmission over a discrete memoryless channel. Data transmitted over the channel are interpreted as pairs (m k ,t k ), where m k is a message generated by the source and t k is a time instant

  8. Freely Licensed and Open Source Pipelines for Art Based Film and Media Production

    Directory of Open Access Journals (Sweden)

    Anthony Whitehead

    2009-08-01

    Full Text Available Given the number of free/libre and open source licensed tools, and the number of "no cost" applications at the fingertips of the artist/animator/film developer today, the ability to "create what you will" is now an option for everyone. The advent of affordable media development tools has opened up the world of media production to those who were previously locked out of the Hollywood studio system. Proprietary software including Adobe Creative Suite, Autodesk?s Maya, Nuke, After Effects, Final Draft, and a litany of other necessary tools creates a financial wall so high that ?will? cannot overcome it alone. In this article, we examine a standard pipeline from a birds-eye-view for anyone with a will to create an Indie film. Without breaking the bank, the entire pipeline is achievable using F/LOSS tools and content that is available under a creative commons license. This allows high quality media development for all. In many cases, these same tools are being used by the Hollywood elite.

  9. Transmission imaging with a coded source

    International Nuclear Information System (INIS)

    Stoner, W.W.; Sage, J.P.; Braun, M.; Wilson, D.T.; Barrett, H.H.

    1976-01-01

    The conventional approach to transmission imaging is to use a rotating anode x-ray tube, which provides the small, brilliant x-ray source needed to cast sharp images of acceptable intensity. Stationary anode sources, although inherently less brilliant, are more compatible with the use of large area anodes, and so they can be made more powerful than rotating anode sources. Spatial modulation of the source distribution provides a way to introduce detailed structure in the transmission images cast by large area sources, and this permits the recovery of high resolution images, in spite of the source diameter. The spatial modulation is deliberately chosen to optimize recovery of image structure; the modulation pattern is therefore called a ''code.'' A variety of codes may be used; the essential mathematical property is that the code possess a sharply peaked autocorrelation function, because this property permits the decoding of the raw image cast by th coded source. Random point arrays, non-redundant point arrays, and the Fresnel zone pattern are examples of suitable codes. This paper is restricted to the case of the Fresnel zone pattern code, which has the unique additional property of generating raw images analogous to Fresnel holograms. Because the spatial frequency of these raw images are extremely coarse compared with actual holograms, a photoreduction step onto a holographic plate is necessary before the decoded image may be displayed with the aid of coherent illumination

  10. Present state of the SOURCES computer code

    International Nuclear Information System (INIS)

    Shores, Erik F.

    2002-01-01

    In various stages of development for over two decades, the SOURCES computer code continues to calculate neutron production rates and spectra from four types of problems: homogeneous media, two-region interfaces, three-region interfaces and that of a monoenergetic alpha particle beam incident on a slab of target material. Graduate work at the University of Missouri - Rolla, in addition to user feedback from a tutorial course, provided the impetus for a variety of code improvements. Recently upgraded to version 4B, initial modifications to SOURCES focused on updates to the 'tape5' decay data library. Shortly thereafter, efforts focused on development of a graphical user interface for the code. This paper documents the Los Alamos SOURCES Tape1 Creator and Library Link (LASTCALL) and describes additional library modifications in more detail. Minor improvements and planned enhancements are discussed.

  11. Image authentication using distributed source coding.

    Science.gov (United States)

    Lin, Yao-Chung; Varodayan, David; Girod, Bernd

    2012-01-01

    We present a novel approach using distributed source coding for image authentication. The key idea is to provide a Slepian-Wolf encoded quantized image projection as authentication data. This version can be correctly decoded with the help of an authentic image as side information. Distributed source coding provides the desired robustness against legitimate variations while detecting illegitimate modification. The decoder incorporating expectation maximization algorithms can authenticate images which have undergone contrast, brightness, and affine warping adjustments. Our authentication system also offers tampering localization by using the sum-product algorithm.

  12. Adaptive quantization of local field potentials for wireless implants in freely moving animals: an open-source neural recording device

    Science.gov (United States)

    Martinez, Dominique; Clément, Maxime; Messaoudi, Belkacem; Gervasoni, Damien; Litaudon, Philippe; Buonviso, Nathalie

    2018-04-01

    Objective. Modern neuroscience research requires electrophysiological recording of local field potentials (LFPs) in moving animals. Wireless transmission has the advantage of removing the wires between the animal and the recording equipment but is hampered by the large number of data to be sent at a relatively high rate. Approach. To reduce transmission bandwidth, we propose an encoder/decoder scheme based on adaptive non-uniform quantization. Our algorithm uses the current transmitted codeword to adapt the quantization intervals to changing statistics in LFP signals. It is thus backward adaptive and does not require the sending of side information. The computational complexity is low and similar at the encoder and decoder sides. These features allow for real-time signal recovery and facilitate hardware implementation with low-cost commercial microcontrollers. Main results. As proof-of-concept, we developed an open-source neural recording device called NeRD. The NeRD prototype digitally transmits eight channels encoded at 10 kHz with 2 bits per sample. It occupies a volume of 2  ×  2  ×  2 cm3 and weighs 8 g with a small battery allowing for 2 h 40 min of autonomy. The power dissipation is 59.4 mW for a communication range of 8 m and transmission losses below 0.1%. The small weight and low power consumption offer the possibility of mounting the entire device on the head of a rodent without resorting to a separate head-stage and battery backpack. The NeRD prototype is validated in recording LFPs in freely moving rats at 2 bits per sample while maintaining an acceptable signal-to-noise ratio (>30 dB) over a range of noisy channels. Significance. Adaptive quantization in neural implants allows for lower transmission bandwidths while retaining high signal fidelity and preserving fundamental frequencies in LFPs.

  13. Measuring Modularity in Open Source Code Bases

    Directory of Open Access Journals (Sweden)

    Roberto Milev

    2009-03-01

    Full Text Available Modularity of an open source software code base has been associated with growth of the software development community, the incentives for voluntary code contribution, and a reduction in the number of users who take code without contributing back to the community. As a theoretical construct, modularity links OSS to other domains of research, including organization theory, the economics of industry structure, and new product development. However, measuring the modularity of an OSS design has proven difficult, especially for large and complex systems. In this article, we describe some preliminary results of recent research at Carleton University that examines the evolving modularity of large-scale software systems. We describe a measurement method and a new modularity metric for comparing code bases of different size, introduce an open source toolkit that implements this method and metric, and provide an analysis of the evolution of the Apache Tomcat application server as an illustrative example of the insights gained from this approach. Although these results are preliminary, they open the door to further cross-discipline research that quantitatively links the concerns of business managers, entrepreneurs, policy-makers, and open source software developers.

  14. Code Forking, Governance, and Sustainability in Open Source Software

    OpenAIRE

    Juho Lindman; Linus Nyman

    2013-01-01

    The right to fork open source code is at the core of open source licensing. All open source licenses grant the right to fork their code, that is to start a new development effort using an existing code as its base. Thus, code forking represents the single greatest tool available for guaranteeing sustainability in open source software. In addition to bolstering program sustainability, code forking directly affects the governance of open source initiatives. Forking, and even the mere possibilit...

  15. Syndrome-source-coding and its universal generalization. [error correcting codes for data compression

    Science.gov (United States)

    Ancheta, T. C., Jr.

    1976-01-01

    A method of using error-correcting codes to obtain data compression, called syndrome-source-coding, is described in which the source sequence is treated as an error pattern whose syndrome forms the compressed data. It is shown that syndrome-source-coding can achieve arbitrarily small distortion with the number of compressed digits per source digit arbitrarily close to the entropy of a binary memoryless source. A 'universal' generalization of syndrome-source-coding is formulated which provides robustly effective distortionless coding of source ensembles. Two examples are given, comparing the performance of noiseless universal syndrome-source-coding to (1) run-length coding and (2) Lynch-Davisson-Schalkwijk-Cover universal coding for an ensemble of binary memoryless sources.

  16. On the Combination of Multi-Layer Source Coding and Network Coding for Wireless Networks

    DEFF Research Database (Denmark)

    Krigslund, Jeppe; Fitzek, Frank; Pedersen, Morten Videbæk

    2013-01-01

    quality is developed. A linear coding structure designed to gracefully encapsulate layered source coding provides both low complexity of the utilised linear coding while enabling robust erasure correction in the form of fountain coding capabilities. The proposed linear coding structure advocates efficient...

  17. Research on Primary Shielding Calculation Source Generation Codes

    Science.gov (United States)

    Zheng, Zheng; Mei, Qiliang; Li, Hui; Shangguan, Danhua; Zhang, Guangchun

    2017-09-01

    Primary Shielding Calculation (PSC) plays an important role in reactor shielding design and analysis. In order to facilitate PSC, a source generation code is developed to generate cumulative distribution functions (CDF) for the source particle sample code of the J Monte Carlo Transport (JMCT) code, and a source particle sample code is deveoped to sample source particle directions, types, coordinates, energy and weights from the CDFs. A source generation code is developed to transform three dimensional (3D) power distributions in xyz geometry to source distributions in r θ z geometry for the J Discrete Ordinate Transport (JSNT) code. Validation on PSC model of Qinshan No.1 nuclear power plant (NPP), CAP1400 and CAP1700 reactors are performed. Numerical results show that the theoretical model and the codes are both correct.

  18. The Visual Code Navigator : An Interactive Toolset for Source Code Investigation

    NARCIS (Netherlands)

    Lommerse, Gerard; Nossin, Freek; Voinea, Lucian; Telea, Alexandru

    2005-01-01

    We present the Visual Code Navigator, a set of three interrelated visual tools that we developed for exploring large source code software projects from three different perspectives, or views: The syntactic view shows the syntactic constructs in the source code. The symbol view shows the objects a

  19. Source Code Stylometry Improvements in Python

    Science.gov (United States)

    2017-12-14

    grant (Caliskan-Islam et al. 2015) ............. 1 Fig. 2 Corresponding abstract syntax tree from de-anonymizing programmers’ paper (Caliskan-Islam et...person can be identified via their handwriting or an author identified by their style or prose, programmers can be identified by their code...Provided a labelled training set of code samples (example in Fig. 1), the techniques used in stylometry can identify the author of a piece of code or even

  20. Bit rates in audio source coding

    NARCIS (Netherlands)

    Veldhuis, Raymond N.J.

    1992-01-01

    The goal is to introduce and solve the audio coding optimization problem. Psychoacoustic results such as masking and excitation pattern models are combined with results from rate distortion theory to formulate the audio coding optimization problem. The solution of the audio optimization problem is a

  1. Rate-adaptive BCH coding for Slepian-Wolf coding of highly correlated sources

    DEFF Research Database (Denmark)

    Forchhammer, Søren; Salmistraro, Matteo; Larsen, Knud J.

    2012-01-01

    This paper considers using BCH codes for distributed source coding using feedback. The focus is on coding using short block lengths for a binary source, X, having a high correlation between each symbol to be coded and a side information, Y, such that the marginal probability of each symbol, Xi in X......, given Y is highly skewed. In the analysis, noiseless feedback and noiseless communication are assumed. A rate-adaptive BCH code is presented and applied to distributed source coding. Simulation results for a fixed error probability show that rate-adaptive BCH achieves better performance than LDPCA (Low......-Density Parity-Check Accumulate) codes for high correlation between source symbols and the side information....

  2. Data processing with microcode designed with source coding

    Science.gov (United States)

    McCoy, James A; Morrison, Steven E

    2013-05-07

    Programming for a data processor to execute a data processing application is provided using microcode source code. The microcode source code is assembled to produce microcode that includes digital microcode instructions with which to signal the data processor to execute the data processing application.

  3. Repairing business process models as retrieved from source code

    NARCIS (Netherlands)

    Fernández-Ropero, M.; Reijers, H.A.; Pérez-Castillo, R.; Piattini, M.; Nurcan, S.; Proper, H.A.; Soffer, P.; Krogstie, J.; Schmidt, R.; Halpin, T.; Bider, I.

    2013-01-01

    The static analysis of source code has become a feasible solution to obtain underlying business process models from existing information systems. Due to the fact that not all information can be automatically derived from source code (e.g., consider manual activities), such business process models

  4. Iterative List Decoding of Concatenated Source-Channel Codes

    Directory of Open Access Journals (Sweden)

    Hedayat Ahmadreza

    2005-01-01

    Full Text Available Whenever variable-length entropy codes are used in the presence of a noisy channel, any channel errors will propagate and cause significant harm. Despite using channel codes, some residual errors always remain, whose effect will get magnified by error propagation. Mitigating this undesirable effect is of great practical interest. One approach is to use the residual redundancy of variable length codes for joint source-channel decoding. In this paper, we improve the performance of residual redundancy source-channel decoding via an iterative list decoder made possible by a nonbinary outer CRC code. We show that the list decoding of VLC's is beneficial for entropy codes that contain redundancy. Such codes are used in state-of-the-art video coders, for example. The proposed list decoder improves the overall performance significantly in AWGN and fully interleaved Rayleigh fading channels.

  5. The Astrophysics Source Code Library by the numbers

    Science.gov (United States)

    Allen, Alice; Teuben, Peter; Berriman, G. Bruce; DuPrie, Kimberly; Mink, Jessica; Nemiroff, Robert; Ryan, PW; Schmidt, Judy; Shamir, Lior; Shortridge, Keith; Wallin, John; Warmels, Rein

    2018-01-01

    The Astrophysics Source Code Library (ASCL, ascl.net) was founded in 1999 by Robert Nemiroff and John Wallin. ASCL editors seek both new and old peer-reviewed papers that describe methods or experiments that involve the development or use of source code, and add entries for the found codes to the library. Software authors can submit their codes to the ASCL as well. This ensures a comprehensive listing covering a significant number of the astrophysics source codes used in peer-reviewed studies. The ASCL is indexed by both NASA’s Astrophysics Data System (ADS) and Web of Science, making software used in research more discoverable. This presentation covers the growth in the ASCL’s number of entries, the number of citations to its entries, and in which journals those citations appear. It also discusses what changes have been made to the ASCL recently, and what its plans are for the future.

  6. Code Forking, Governance, and Sustainability in Open Source Software

    Directory of Open Access Journals (Sweden)

    Juho Lindman

    2013-01-01

    Full Text Available The right to fork open source code is at the core of open source licensing. All open source licenses grant the right to fork their code, that is to start a new development effort using an existing code as its base. Thus, code forking represents the single greatest tool available for guaranteeing sustainability in open source software. In addition to bolstering program sustainability, code forking directly affects the governance of open source initiatives. Forking, and even the mere possibility of forking code, affects the governance and sustainability of open source initiatives on three distinct levels: software, community, and ecosystem. On the software level, the right to fork makes planned obsolescence, versioning, vendor lock-in, end-of-support issues, and similar initiatives all but impossible to implement. On the community level, forking impacts both sustainability and governance through the power it grants the community to safeguard against unfavourable actions by corporations or project leaders. On the business-ecosystem level forking can serve as a catalyst for innovation while simultaneously promoting better quality software through natural selection. Thus, forking helps keep open source initiatives relevant and presents opportunities for the development and commercialization of current and abandoned programs.

  7. Distributed Remote Vector Gaussian Source Coding with Covariance Distortion Constraints

    DEFF Research Database (Denmark)

    Zahedi, Adel; Østergaard, Jan; Jensen, Søren Holdt

    2014-01-01

    In this paper, we consider a distributed remote source coding problem, where a sequence of observations of source vectors is available at the encoder. The problem is to specify the optimal rate for encoding the observations subject to a covariance matrix distortion constraint and in the presence...

  8. Blahut-Arimoto algorithm and code design for action-dependent source coding problems

    DEFF Research Database (Denmark)

    Trillingsgaard, Kasper Fløe; Simeone, Osvaldo; Popovski, Petar

    2013-01-01

    The source coding problem with action-dependent side information at the decoder has recently been introduced to model data acquisition in resource-constrained systems. In this paper, an efficient Blahut-Arimoto-type algorithm for the numerical computation of the rate-distortion-cost function...... for this problem is proposed. Moreover, a simplified two-stage code structure based on multiplexing is put forth, whereby the first stage encodes the actions and the second stage is composed of an array of classical Wyner-Ziv codes, one for each action. Leveraging this structure, specific coding/decoding...... strategies are designed based on LDGM codes and message passing. Through numerical examples, the proposed code design is shown to achieve performance close to the rate-distortion-cost function....

  9. Distributed coding of multiview sparse sources with joint recovery

    DEFF Research Database (Denmark)

    Luong, Huynh Van; Deligiannis, Nikos; Forchhammer, Søren

    2016-01-01

    In support of applications involving multiview sources in distributed object recognition using lightweight cameras, we propose a new method for the distributed coding of sparse sources as visual descriptor histograms extracted from multiview images. The problem is challenging due to the computati...... transform (SIFT) descriptors extracted from multiview images shows that our method leads to bit-rate saving of up to 43% compared to the state-of-the-art distributed compressed sensing method with independent encoding of the sources....

  10. Development of in-vessel source term analysis code, tracer

    International Nuclear Information System (INIS)

    Miyagi, K.; Miyahara, S.

    1996-01-01

    Analyses of radionuclide transport in fuel failure accidents (generally referred to source terms) are considered to be important especially in the severe accident evaluation. The TRACER code has been developed to realistically predict the time dependent behavior of FPs and aerosols within the primary cooling system for wide range of fuel failure events. This paper presents the model description, results of validation study, the recent model advancement status of the code, and results of check out calculations under reactor conditions. (author)

  11. Java Source Code Analysis for API Migration to Embedded Systems

    Energy Technology Data Exchange (ETDEWEB)

    Winter, Victor [Univ. of Nebraska, Omaha, NE (United States); McCoy, James A. [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Guerrero, Jonathan [Univ. of Nebraska, Omaha, NE (United States); Reinke, Carl Werner [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Perry, James Thomas [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States)

    2015-02-01

    Embedded systems form an integral part of our technological infrastructure and oftentimes play a complex and critical role within larger systems. From the perspective of reliability, security, and safety, strong arguments can be made favoring the use of Java over C in such systems. In part, this argument is based on the assumption that suitable subsets of Java’s APIs and extension libraries are available to embedded software developers. In practice, a number of Java-based embedded processors do not support the full features of the JVM. For such processors, source code migration is a mechanism by which key abstractions offered by APIs and extension libraries can made available to embedded software developers. The analysis required for Java source code-level library migration is based on the ability to correctly resolve element references to their corresponding element declarations. A key challenge in this setting is how to perform analysis for incomplete source-code bases (e.g., subsets of libraries) from which types and packages have been omitted. This article formalizes an approach that can be used to extend code bases targeted for migration in such a manner that the threats associated the analysis of incomplete code bases are eliminated.

  12. Source Coding for Wireless Distributed Microphones in Reverberant Environments

    DEFF Research Database (Denmark)

    Zahedi, Adel

    2016-01-01

    . However, it comes with the price of several challenges, including the limited power and bandwidth resources for wireless transmission of audio recordings. In such a setup, we study the problem of source coding for the compression of the audio recordings before the transmission in order to reduce the power...... consumption and/or transmission bandwidth by reduction in the transmission rates. Source coding for wireless microphones in reverberant environments has several special characteristics which make it more challenging in comparison with regular audio coding. The signals which are acquired by the microphones......Modern multimedia systems are more and more shifting toward distributed and networked structures. This includes audio systems, where networks of wireless distributed microphones are replacing the traditional microphone arrays. This allows for flexibility of placement and high spatial diversity...

  13. Plagiarism Detection Algorithm for Source Code in Computer Science Education

    Science.gov (United States)

    Liu, Xin; Xu, Chan; Ouyang, Boyu

    2015-01-01

    Nowadays, computer programming is getting more necessary in the course of program design in college education. However, the trick of plagiarizing plus a little modification exists among some students' home works. It's not easy for teachers to judge if there's plagiarizing in source code or not. Traditional detection algorithms cannot fit this…

  14. Automating RPM Creation from a Source Code Repository

    Science.gov (United States)

    2012-02-01

    apps/usr --with- libpq=/apps/ postgres make rm -rf $RPM_BUILD_ROOT umask 0077 mkdir -p $RPM_BUILD_ROOT/usr/local/bin mkdir -p $RPM_BUILD_ROOT...from a source code repository. %pre %prep %setup %build ./autogen.sh ; ./configure --with-db=/apps/db --with-libpq=/apps/ postgres make

  15. Source Coding in Networks with Covariance Distortion Constraints

    DEFF Research Database (Denmark)

    Zahedi, Adel; Østergaard, Jan; Jensen, Søren Holdt

    2016-01-01

    results to a joint source coding and denoising problem. We consider a network with a centralized topology and a given weighted sum-rate constraint, where the received signals at the center are to be fused to maximize the output SNR while enforcing no linear distortion. We show that one can design...

  16. Coded aperture imaging of alpha source spatial distribution

    International Nuclear Information System (INIS)

    Talebitaher, Alireza; Shutler, Paul M.E.; Springham, Stuart V.; Rawat, Rajdeep S.; Lee, Paul

    2012-01-01

    The Coded Aperture Imaging (CAI) technique has been applied with CR-39 nuclear track detectors to image alpha particle source spatial distributions. The experimental setup comprised: a 226 Ra source of alpha particles, a laser-machined CAI mask, and CR-39 detectors, arranged inside a vacuum enclosure. Three different alpha particle source shapes were synthesized by using a linear translator to move the 226 Ra source within the vacuum enclosure. The coded mask pattern used is based on a Singer Cyclic Difference Set, with 400 pixels and 57 open square holes (representing ρ = 1/7 = 14.3% open fraction). After etching of the CR-39 detectors, the area, circularity, mean optical density and positions of all candidate tracks were measured by an automated scanning system. Appropriate criteria were used to select alpha particle tracks, and a decoding algorithm applied to the (x, y) data produced the de-coded image of the source. Signal to Noise Ratio (SNR) values obtained for alpha particle CAI images were found to be substantially better than those for corresponding pinhole images, although the CAI-SNR values were below the predictions of theoretical formulae. Monte Carlo simulations of CAI and pinhole imaging were performed in order to validate the theoretical SNR formulae and also our CAI decoding algorithm. There was found to be good agreement between the theoretical formulae and SNR values obtained from simulations. Possible reasons for the lower SNR obtained for the experimental CAI study are discussed.

  17. Freely flowing conversations

    DEFF Research Database (Denmark)

    Aakjær, Marie Kirstejn; Andrade, David; Dexters, Peter

    and in regards to rehabilitation efforts. In the context of prisons UDI is inspired by the complexity approach (Stacey 2005). We seek to facilitate freely flowing conversations between inmates, staff and managers – pushing the boundaries of existing norms, roles and beliefs. In the end however we rely...... relations by changing conversations. Through the theoretical framework of the complexity approach, we discuss how this may lead to organizational change. Finally we suggest that inviting inmates to take part in conversations about core organizational development may be a fundamental strategy in trying...

  18. Distributed Source Coding Techniques for Lossless Compression of Hyperspectral Images

    Directory of Open Access Journals (Sweden)

    Barni Mauro

    2007-01-01

    Full Text Available This paper deals with the application of distributed source coding (DSC theory to remote sensing image compression. Although DSC exhibits a significant potential in many application fields, up till now the results obtained on real signals fall short of the theoretical bounds, and often impose additional system-level constraints. The objective of this paper is to assess the potential of DSC for lossless image compression carried out onboard a remote platform. We first provide a brief overview of DSC of correlated information sources. We then focus on onboard lossless image compression, and apply DSC techniques in order to reduce the complexity of the onboard encoder, at the expense of the decoder's, by exploiting the correlation of different bands of a hyperspectral dataset. Specifically, we propose two different compression schemes, one based on powerful binary error-correcting codes employed as source codes, and one based on simpler multilevel coset codes. The performance of both schemes is evaluated on a few AVIRIS scenes, and is compared with other state-of-the-art 2D and 3D coders. Both schemes turn out to achieve competitive compression performance, and one of them also has reduced complexity. Based on these results, we highlight the main issues that are still to be solved to further improve the performance of DSC-based remote sensing systems.

  19. MARE2DEM: a 2-D inversion code for controlled-source electromagnetic and magnetotelluric data

    Science.gov (United States)

    Key, Kerry

    2016-10-01

    This work presents MARE2DEM, a freely available code for 2-D anisotropic inversion of magnetotelluric (MT) data and frequency-domain controlled-source electromagnetic (CSEM) data from onshore and offshore surveys. MARE2DEM parametrizes the inverse model using a grid of arbitrarily shaped polygons, where unstructured triangular or quadrilateral grids are typically used due to their ease of construction. Unstructured grids provide significantly more geometric flexibility and parameter efficiency than the structured rectangular grids commonly used by most other inversion codes. Transmitter and receiver components located on topographic slopes can be tilted parallel to the boundary so that the simulated electromagnetic fields accurately reproduce the real survey geometry. The forward solution is implemented with a goal-oriented adaptive finite-element method that automatically generates and refines unstructured triangular element grids that conform to the inversion parameter grid, ensuring accurate responses as the model conductivity changes. This dual-grid approach is significantly more efficient than the conventional use of a single grid for both the forward and inverse meshes since the more detailed finite-element meshes required for accurate responses do not increase the memory requirements of the inverse problem. Forward solutions are computed in parallel with a highly efficient scaling by partitioning the data into smaller independent modeling tasks consisting of subsets of the input frequencies, transmitters and receivers. Non-linear inversion is carried out with a new Occam inversion approach that requires fewer forward calls. Dense matrix operations are optimized for memory and parallel scalability using the ScaLAPACK parallel library. Free parameters can be bounded using a new non-linear transformation that leaves the transformed parameters nearly the same as the original parameters within the bounds, thereby reducing non-linear smoothing effects. Data

  20. Joint Source-Channel Coding by Means of an Oversampled Filter Bank Code

    Directory of Open Access Journals (Sweden)

    Marinkovic Slavica

    2006-01-01

    Full Text Available Quantized frame expansions based on block transforms and oversampled filter banks (OFBs have been considered recently as joint source-channel codes (JSCCs for erasure and error-resilient signal transmission over noisy channels. In this paper, we consider a coding chain involving an OFB-based signal decomposition followed by scalar quantization and a variable-length code (VLC or a fixed-length code (FLC. This paper first examines the problem of channel error localization and correction in quantized OFB signal expansions. The error localization problem is treated as an -ary hypothesis testing problem. The likelihood values are derived from the joint pdf of the syndrome vectors under various hypotheses of impulse noise positions, and in a number of consecutive windows of the received samples. The error amplitudes are then estimated by solving the syndrome equations in the least-square sense. The message signal is reconstructed from the corrected received signal by a pseudoinverse receiver. We then improve the error localization procedure by introducing a per-symbol reliability information in the hypothesis testing procedure of the OFB syndrome decoder. The per-symbol reliability information is produced by the soft-input soft-output (SISO VLC/FLC decoders. This leads to the design of an iterative algorithm for joint decoding of an FLC and an OFB code. The performance of the algorithms developed is evaluated in a wavelet-based image coding system.

  1. The Astrophysics Source Code Library: Supporting software publication and citation

    Science.gov (United States)

    Allen, Alice; Teuben, Peter

    2018-01-01

    The Astrophysics Source Code Library (ASCL, ascl.net), established in 1999, is a free online registry for source codes used in research that has appeared in, or been submitted to, peer-reviewed publications. The ASCL is indexed by the SAO/NASA Astrophysics Data System (ADS) and Web of Science and is citable by using the unique ascl ID assigned to each code. In addition to registering codes, the ASCL can house archive files for download and assign them DOIs. The ASCL advocations for software citation on par with article citation, participates in multidiscipinary events such as Force11, OpenCon, and the annual Workshop on Sustainable Software for Science, works with journal publishers, and organizes Special Sessions and Birds of a Feather meetings at national and international conferences such as Astronomical Data Analysis Software and Systems (ADASS), European Week of Astronomy and Space Science, and AAS meetings. In this presentation, I will discuss some of the challenges of gathering credit for publishing software and ideas and efforts from other disciplines that may be useful to astronomy.

  2. Source Code Vulnerabilities in IoT Software Systems

    Directory of Open Access Journals (Sweden)

    Saleh Mohamed Alnaeli

    2017-08-01

    Full Text Available An empirical study that examines the usage of known vulnerable statements in software systems developed in C/C++ and used for IoT is presented. The study is conducted on 18 open source systems comprised of millions of lines of code and containing thousands of files. Static analysis methods are applied to each system to determine the number of unsafe commands (e.g., strcpy, strcmp, and strlen that are well-known among research communities to cause potential risks and security concerns, thereby decreasing a system’s robustness and quality. These unsafe statements are banned by many companies (e.g., Microsoft. The use of these commands should be avoided from the start when writing code and should be removed from legacy code over time as recommended by new C/C++ language standards. Each system is analyzed and the distribution of the known unsafe commands is presented. Historical trends in the usage of the unsafe commands of 7 of the systems are presented to show how the studied systems evolved over time with respect to the vulnerable code. The results show that the most prevalent unsafe command used for most systems is memcpy, followed by strlen. These results can be used to help train software developers on secure coding practices so that they can write higher quality software systems.

  3. Verification test calculations for the Source Term Code Package

    International Nuclear Information System (INIS)

    Denning, R.S.; Wooton, R.O.; Alexander, C.A.; Curtis, L.A.; Cybulskis, P.; Gieseke, J.A.; Jordan, H.; Lee, K.W.; Nicolosi, S.L.

    1986-07-01

    The purpose of this report is to demonstrate the reasonableness of the Source Term Code Package (STCP) results. Hand calculations have been performed spanning a wide variety of phenomena within the context of a single accident sequence, a loss of all ac power with late containment failure, in the Peach Bottom (BWR) plant, and compared with STCP results. The report identifies some of the limitations of the hand calculation effort. The processes involved in a core meltdown accident are complex and coupled. Hand calculations by their nature must deal with gross simplifications of these processes. Their greatest strength is as an indicator that a computer code contains an error, for example that it doesn't satisfy basic conservation laws, rather than in showing the analysis accurately represents reality. Hand calculations are an important element of verification but they do not satisfy the need for code validation. The code validation program for the STCP is a separate effort. In general the hand calculation results show that models used in the STCP codes (e.g., MARCH, TRAP-MELT, VANESA) obey basic conservation laws and produce reasonable results. The degree of agreement and significance of the comparisons differ among the models evaluated. 20 figs., 26 tabs

  4. Tangent: Automatic Differentiation Using Source Code Transformation in Python

    OpenAIRE

    van Merriënboer, Bart; Wiltschko, Alexander B.; Moldovan, Dan

    2017-01-01

    Automatic differentiation (AD) is an essential primitive for machine learning programming systems. Tangent is a new library that performs AD using source code transformation (SCT) in Python. It takes numeric functions written in a syntactic subset of Python and NumPy as input, and generates new Python functions which calculate a derivative. This approach to automatic differentiation is different from existing packages popular in machine learning, such as TensorFlow and Autograd. Advantages ar...

  5. Biopython: freely available Python tools for computational molecular biology and bioinformatics

    DEFF Research Database (Denmark)

    Cock, Peter J A; Antao, Tiago; Chang, Jeffrey T

    2009-01-01

    SUMMARY: The Biopython project is a mature open source international collaboration of volunteer developers, providing Python libraries for a wide range of bioinformatics problems. Biopython includes modules for reading and writing different sequence file formats and multiple sequence alignments......, dealing with 3D macro molecular structures, interacting with common tools such as BLAST, ClustalW and EMBOSS, accessing key online databases, as well as providing numerical methods for statistical learning. AVAILABILITY: Biopython is freely available, with documentation and source code at (www...

  6. Asymmetric Joint Source-Channel Coding for Correlated Sources with Blind HMM Estimation at the Receiver

    Directory of Open Access Journals (Sweden)

    Ser Javier Del

    2005-01-01

    Full Text Available We consider the case of two correlated sources, and . The correlation between them has memory, and it is modelled by a hidden Markov chain. The paper studies the problem of reliable communication of the information sent by the source over an additive white Gaussian noise (AWGN channel when the output of the other source is available as side information at the receiver. We assume that the receiver has no a priori knowledge of the correlation statistics between the sources. In particular, we propose the use of a turbo code for joint source-channel coding of the source . The joint decoder uses an iterative scheme where the unknown parameters of the correlation model are estimated jointly within the decoding process. It is shown that reliable communication is possible at signal-to-noise ratios close to the theoretical limits set by the combination of Shannon and Slepian-Wolf theorems.

  7. Towards Holography via Quantum Source-Channel Codes

    Science.gov (United States)

    Pastawski, Fernando; Eisert, Jens; Wilming, Henrik

    2017-07-01

    While originally motivated by quantum computation, quantum error correction (QEC) is currently providing valuable insights into many-body quantum physics, such as topological phases of matter. Furthermore, mounting evidence originating from holography research (AdS/CFT) indicates that QEC should also be pertinent for conformal field theories. With this motivation in mind, we introduce quantum source-channel codes, which combine features of lossy compression and approximate quantum error correction, both of which are predicted in holography. Through a recent construction for approximate recovery maps, we derive guarantees on its erasure decoding performance from calculations of an entropic quantity called conditional mutual information. As an example, we consider Gibbs states of the transverse field Ising model at criticality and provide evidence that they exhibit nontrivial protection from local erasure. This gives rise to the first concrete interpretation of a bona fide conformal field theory as a quantum error correcting code. We argue that quantum source-channel codes are of independent interest beyond holography.

  8. Health physics source document for codes of practice

    International Nuclear Information System (INIS)

    Pearson, G.W.; Meggitt, G.C.

    1989-05-01

    Personnel preparing codes of practice often require basic Health Physics information or advice relating to radiological protection problems and this document is written primarily to supply such information. Certain technical terms used in the text are explained in the extensive glossary. Due to the pace of change in the field of radiological protection it is difficult to produce an up-to-date document. This document was compiled during 1988 however, and therefore contains the principle changes brought about by the introduction of the Ionising Radiations Regulations (1985). The paper covers the nature of ionising radiation, its biological effects and the principles of control. It is hoped that the document will provide a useful source of information for both codes of practice and wider areas and stimulate readers to study radiological protection issues in greater depth. (author)

  9. Running the source term code package in Elebra MX-850

    International Nuclear Information System (INIS)

    Guimaraes, A.C.F.; Goes, A.G.A.

    1988-01-01

    The source term package (STCP) is one of the main tools applied in calculations of behavior of fission products from nuclear power plants. It is a set of computer codes to assist the calculations of the radioactive materials leaving from the metallic containment of power reactors to the environment during a severe reactor accident. The original version of STCP runs in SDC computer systems, but as it has been written in FORTRAN 77, is possible run it in others systems such as IBM, Burroughs, Elebra, etc. The Elebra MX-8500 version of STCP contains 5 codes:March 3, Trapmelt, Tcca, Vanessa and Nava. The example presented in this report has taken into consideration a small LOCA accident into a PWR type reactor. (M.I.)

  10. Microdosimetry computation code of internal sources - MICRODOSE 1

    International Nuclear Information System (INIS)

    Li Weibo; Zheng Wenzhong; Ye Changqing

    1995-01-01

    This paper describes a microdosimetry computation code, MICRODOSE 1, on the basis of the following described methods: (1) the method of calculating f 1 (z) for charged particle in the unit density tissues; (2) the method of calculating f(z) for a point source; (3) the method of applying the Fourier transform theory to the calculation of the compound Poisson process; (4) the method of using fast Fourier transform technique to determine f(z) and, giving some computed examples based on the code, MICRODOSE 1, including alpha particles emitted from 239 Pu in the alveolar lung tissues and from radon progeny RaA and RAC in the human respiratory tract. (author). 13 refs., 6 figs

  11. COMPASS: A source term code for investigating capillary barrier performance

    International Nuclear Information System (INIS)

    Zhou, Wei; Apted, J.J.

    1996-01-01

    A computer code COMPASS based on compartment model approach is developed to calculate the near-field source term of the High-Level-Waste repository under unsaturated conditions. COMPASS is applied to evaluate the expected performance of Richard's (capillary) barriers as backfills to divert infiltrating groundwater at Yucca Mountain. Comparing the release rates of four typical nuclides with and without the Richard's barrier, it is shown that the Richard's barrier significantly decreases the peak release rates from the Engineered-Barrier-System (EBS) into the host rock

  12. Optimization of Coding of AR Sources for Transmission Across Channels with Loss

    DEFF Research Database (Denmark)

    Arildsen, Thomas

    Source coding concerns the representation of information in a source signal using as few bits as possible. In the case of lossy source coding, it is the encoding of a source signal using the fewest possible bits at a given distortion or, at the lowest possible distortion given a specified bit rate....... Channel coding is usually applied in combination with source coding to ensure reliable transmission of the (source coded) information at the maximal rate across a channel given the properties of this channel. In this thesis, we consider the coding of auto-regressive (AR) sources which are sources that can...... compared to the case where the encoder is unaware of channel loss. We finally provide an extensive overview of cross-layer communication issues which are important to consider due to the fact that the proposed algorithm interacts with the source coding and exploits channel-related information typically...

  13. A Comparison of Source Code Plagiarism Detection Engines

    Science.gov (United States)

    Lancaster, Thomas; Culwin, Fintan

    2004-06-01

    Automated techniques for finding plagiarism in student source code submissions have been in use for over 20 years and there are many available engines and services. This paper reviews the literature on the major modern detection engines, providing a comparison of them based upon the metrics and techniques they deploy. Generally the most common and effective techniques are seen to involve tokenising student submissions then searching pairs of submissions for long common substrings, an example of what is defined to be a paired structural metric. Computing academics are recommended to use one of the two Web-based detection engines, MOSS and JPlag. It is shown that whilst detection is well established there are still places where further research would be useful, particularly where visual support of the investigation process is possible.

  14. Source Code Verification for Embedded Systems using Prolog

    Directory of Open Access Journals (Sweden)

    Frank Flederer

    2017-01-01

    Full Text Available System relevant embedded software needs to be reliable and, therefore, well tested, especially for aerospace systems. A common technique to verify programs is the analysis of their abstract syntax tree (AST. Tree structures can be elegantly analyzed with the logic programming language Prolog. Moreover, Prolog offers further advantages for a thorough analysis: On the one hand, it natively provides versatile options to efficiently process tree or graph data structures. On the other hand, Prolog's non-determinism and backtracking eases tests of different variations of the program flow without big effort. A rule-based approach with Prolog allows to characterize the verification goals in a concise and declarative way. In this paper, we describe our approach to verify the source code of a flash file system with the help of Prolog. The flash file system is written in C++ and has been developed particularly for the use in satellites. We transform a given abstract syntax tree of C++ source code into Prolog facts and derive the call graph and the execution sequence (tree, which then are further tested against verification goals. The different program flow branching due to control structures is derived by backtracking as subtrees of the full execution sequence. Finally, these subtrees are verified in Prolog. We illustrate our approach with a case study, where we search for incorrect applications of semaphores in embedded software using the real-time operating system RODOS. We rely on computation tree logic (CTL and have designed an embedded domain specific language (DSL in Prolog to express the verification goals.

  15. Modelling RF sources using 2-D PIC codes

    Energy Technology Data Exchange (ETDEWEB)

    Eppley, K.R.

    1993-03-01

    In recent years, many types of RF sources have been successfully modelled using 2-D PIC codes. Both cross field devices (magnetrons, cross field amplifiers, etc.) and pencil beam devices (klystrons, gyrotrons, TWT'S, lasertrons, etc.) have been simulated. All these devices involve the interaction of an electron beam with an RF circuit. For many applications, the RF structure may be approximated by an equivalent circuit, which appears in the simulation as a boundary condition on the electric field ( port approximation''). The drive term for the circuit is calculated from the energy transfer between beam and field in the drift space. For some applications it may be necessary to model the actual geometry of the structure, although this is more expensive. One problem not entirely solved is how to accurately model in 2-D the coupling to an external waveguide. Frequently this is approximated by a radial transmission line, but this sometimes yields incorrect results. We also discuss issues in modelling the cathode and injecting the beam into the PIC simulation.

  16. Modelling RF sources using 2-D PIC codes

    Energy Technology Data Exchange (ETDEWEB)

    Eppley, K.R.

    1993-03-01

    In recent years, many types of RF sources have been successfully modelled using 2-D PIC codes. Both cross field devices (magnetrons, cross field amplifiers, etc.) and pencil beam devices (klystrons, gyrotrons, TWT`S, lasertrons, etc.) have been simulated. All these devices involve the interaction of an electron beam with an RF circuit. For many applications, the RF structure may be approximated by an equivalent circuit, which appears in the simulation as a boundary condition on the electric field (``port approximation``). The drive term for the circuit is calculated from the energy transfer between beam and field in the drift space. For some applications it may be necessary to model the actual geometry of the structure, although this is more expensive. One problem not entirely solved is how to accurately model in 2-D the coupling to an external waveguide. Frequently this is approximated by a radial transmission line, but this sometimes yields incorrect results. We also discuss issues in modelling the cathode and injecting the beam into the PIC simulation.

  17. Modelling RF sources using 2-D PIC codes

    International Nuclear Information System (INIS)

    Eppley, K.R.

    1993-03-01

    In recent years, many types of RF sources have been successfully modelled using 2-D PIC codes. Both cross field devices (magnetrons, cross field amplifiers, etc.) and pencil beam devices (klystrons, gyrotrons, TWT'S, lasertrons, etc.) have been simulated. All these devices involve the interaction of an electron beam with an RF circuit. For many applications, the RF structure may be approximated by an equivalent circuit, which appears in the simulation as a boundary condition on the electric field (''port approximation''). The drive term for the circuit is calculated from the energy transfer between beam and field in the drift space. For some applications it may be necessary to model the actual geometry of the structure, although this is more expensive. One problem not entirely solved is how to accurately model in 2-D the coupling to an external waveguide. Frequently this is approximated by a radial transmission line, but this sometimes yields incorrect results. We also discuss issues in modelling the cathode and injecting the beam into the PIC simulation

  18. Schroedinger’s Code: A Preliminary Study on Research Source Code Availability and Link Persistence in Astrophysics

    Science.gov (United States)

    Allen, Alice; Teuben, Peter J.; Ryan, P. Wesley

    2018-05-01

    We examined software usage in a sample set of astrophysics research articles published in 2015 and searched for the source codes for the software mentioned in these research papers. We categorized the software to indicate whether the source code is available for download and whether there are restrictions to accessing it, and if the source code is not available, whether some other form of the software, such as a binary, is. We also extracted hyperlinks from one journal’s 2015 research articles, as links in articles can serve as an acknowledgment of software use and lead to the data used in the research, and tested them to determine which of these URLs are still accessible. For our sample of 715 software instances in the 166 articles we examined, we were able to categorize 418 records as according to whether source code was available and found that 285 unique codes were used, 58% of which offered the source code for download. Of the 2558 hyperlinks extracted from 1669 research articles, at best, 90% of them were available over our testing period.

  19. OSSMETER D3.4 – Language-Specific Source Code Quality Analysis

    NARCIS (Netherlands)

    J.J. Vinju (Jurgen); A. Shahi (Ashim); H.J.S. Basten (Bas)

    2014-01-01

    htmlabstractThis deliverable is part of WP3: Source Code Quality and Activity Analysis. It provides descriptions and prototypes of the tools that are needed for source code quality analysis in open source software projects. It builds upon the results of: • Deliverable 3.1 where infra-structure and

  20. Using National Drug Codes and drug knowledge bases to organize prescription records from multiple sources.

    Science.gov (United States)

    Simonaitis, Linas; McDonald, Clement J

    2009-10-01

    The utility of National Drug Codes (NDCs) and drug knowledge bases (DKBs) in the organization of prescription records from multiple sources was studied. The master files of most pharmacy systems include NDCs and local codes to identify the products they dispense. We obtained a large sample of prescription records from seven different sources. These records carried a national product code or a local code that could be translated into a national product code via their formulary master. We obtained mapping tables from five DKBs. We measured the degree to which the DKB mapping tables covered the national product codes carried in or associated with the sample of prescription records. Considering the total prescription volume, DKBs covered 93.0-99.8% of the product codes from three outpatient sources and 77.4-97.0% of the product codes from four inpatient sources. Among the in-patient sources, invented codes explained 36-94% of the noncoverage. Outpatient pharmacy sources rarely invented codes, which comprised only 0.11-0.21% of their total prescription volume, compared with inpatient pharmacy sources for which invented codes comprised 1.7-7.4% of their prescription volume. The distribution of prescribed products was highly skewed, with 1.4-4.4% of codes accounting for 50% of the message volume and 10.7-34.5% accounting for 90% of the message volume. DKBs cover the product codes used by outpatient sources sufficiently well to permit automatic mapping. Changes in policies and standards could increase coverage of product codes used by inpatient sources.

  1. Freely oriented portable superconducting magnet

    Science.gov (United States)

    Schmierer, Eric N [Los Alamos, NM; Prenger, F Coyne [Los Alamos, NM; Hill, Dallas D [Los Alamos, NM

    2010-01-12

    A freely oriented portable superconducting magnet is disclosed. Coolant is supplied to the superconducting magnet from a repository separate from the magnet, enabling portability of the magnet. A plurality of support assemblies structurally anchor and thermally isolate the magnet within a thermal shield. A plurality of support assemblies structurally anchor and thermally isolate the thermal shield within a vacuum vessel. The support assemblies restrain movement of the magnet resulting from energizing and cooldown, as well as from changes in orientation, enabling the magnet to be freely orientable.

  2. Neutron spallation source and the Dubna cascade code

    CERN Document Server

    Kumar, V; Goel, U; Barashenkov, V S

    2003-01-01

    Neutron multiplicity per incident proton, n/p, in collision of high energy proton beam with voluminous Pb and W targets has been estimated from the Dubna cascade code and compared with the available experimental data for the purpose of benchmarking of the code. Contributions of various atomic and nuclear processes for heat production and isotopic yield of secondary nuclei are also estimated to assess the heat and radioactivity conditions of the targets. Results obtained from the code show excellent agreement with the experimental data at beam energy, E < 1.2 GeV and differ maximum up to 25% at higher energy. (author)

  3. Stars with shell energy sources. Part 1. Special evolutionary code

    International Nuclear Information System (INIS)

    Rozyczka, M.

    1977-01-01

    A new version of the Henyey-type stellar evolution code is described and tested. It is shown, as a by-product of the tests, that the thermal time scale of the core of a red giant approaching the helium flash is of the order of the evolutionary time scale. The code itself appears to be a very efficient tool for investigations of the helium flash, carbon flash and the evolution of a white dwarf accreting mass. (author)

  4. Process Model Improvement for Source Code Plagiarism Detection in Student Programming Assignments

    Science.gov (United States)

    Kermek, Dragutin; Novak, Matija

    2016-01-01

    In programming courses there are various ways in which students attempt to cheat. The most commonly used method is copying source code from other students and making minimal changes in it, like renaming variable names. Several tools like Sherlock, JPlag and Moss have been devised to detect source code plagiarism. However, for larger student…

  5. OSSMETER D3.2 – Report on Source Code Activity Metrics

    NARCIS (Netherlands)

    J.J. Vinju (Jurgen); A. Shahi (Ashim)

    2014-01-01

    htmlabstractThis deliverable is part of WP3: Source Code Quality and Activity Analysis. It provides descriptions and initial prototypes of the tools that are needed for source code activity analysis. It builds upon the Deliverable 3.1 where infra-structure and a domain analysis have been

  6. Open Genetic Code: on open source in the life sciences

    OpenAIRE

    Deibel, Eric

    2014-01-01

    The introduction of open source in the life sciences is increasingly being suggested as an alternative to patenting. This is an alternative, however, that takes its shape at the intersection of the life sciences and informatics. Numerous examples can be identified wherein open source in the life sciences refers to access, sharing and collaboration as informatic practices. This includes open source as an experimental model and as a more sophisticated approach of genetic engineering. The first ...

  7. Source Code Analysis Laboratory (SCALe) for Energy Delivery Systems

    Science.gov (United States)

    2010-12-01

    technical competence for the type of tests and calibrations SCALe undertakes. Testing and calibration laboratories that comply with ISO / IEC 17025 ...and exec t [ ISO / IEC 2005]. f a software system indicates that the SCALe analysis di by a CERT secure coding standard. Successful conforma antees that...to be more secure than non- systems. However, no study has yet been performed to p t ssment in accordance with ISO / IEC 17000: “a demonstr g to a

  8. Open Genetic Code : On open source in the life sciences

    NARCIS (Netherlands)

    Deibel, E.

    2014-01-01

    The introduction of open source in the life sciences is increasingly being suggested as an alternative to patenting. This is an alternative, however, that takes its shape at the intersection of the life sciences and informatics. Numerous examples can be identified wherein open source in the life

  9. Open Genetic Code: on open source in the life sciences.

    Science.gov (United States)

    Deibel, Eric

    2014-01-01

    The introduction of open source in the life sciences is increasingly being suggested as an alternative to patenting. This is an alternative, however, that takes its shape at the intersection of the life sciences and informatics. Numerous examples can be identified wherein open source in the life sciences refers to access, sharing and collaboration as informatic practices. This includes open source as an experimental model and as a more sophisticated approach of genetic engineering. The first section discusses the greater flexibly in regard of patenting and the relationship to the introduction of open source in the life sciences. The main argument is that the ownership of knowledge in the life sciences should be reconsidered in the context of the centrality of DNA in informatic formats. This is illustrated by discussing a range of examples of open source models. The second part focuses on open source in synthetic biology as exemplary for the re-materialization of information into food, energy, medicine and so forth. The paper ends by raising the question whether another kind of alternative might be possible: one that looks at open source as a model for an alternative to the commodification of life that is understood as an attempt to comprehensively remove the restrictions from the usage of DNA in any of its formats.

  10. Model-Based Least Squares Reconstruction of Coded Source Neutron Radiographs: Integrating the ORNL HFIR CG1D Source Model

    Energy Technology Data Exchange (ETDEWEB)

    Santos-Villalobos, Hector J [ORNL; Gregor, Jens [University of Tennessee, Knoxville (UTK); Bingham, Philip R [ORNL

    2014-01-01

    At the present, neutron sources cannot be fabricated small and powerful enough in order to achieve high resolution radiography while maintaining an adequate flux. One solution is to employ computational imaging techniques such as a Magnified Coded Source Imaging (CSI) system. A coded-mask is placed between the neutron source and the object. The system resolution is increased by reducing the size of the mask holes and the flux is increased by increasing the size of the coded-mask and/or the number of holes. One limitation of such system is that the resolution of current state-of-the-art scintillator-based detectors caps around 50um. To overcome this challenge, the coded-mask and object are magnified by making the distance from the coded-mask to the object much smaller than the distance from object to detector. In previous work, we have shown via synthetic experiments that our least squares method outperforms other methods in image quality and reconstruction precision because of the modeling of the CSI system components. However, the validation experiments were limited to simplistic neutron sources. In this work, we aim to model the flux distribution of a real neutron source and incorporate such a model in our least squares computational system. We provide a full description of the methodology used to characterize the neutron source and validate the method with synthetic experiments.

  11. Source Authentication for Code Dissemination Supporting Dynamic Packet Size in Wireless Sensor Networks.

    Science.gov (United States)

    Kim, Daehee; Kim, Dongwan; An, Sunshin

    2016-07-09

    Code dissemination in wireless sensor networks (WSNs) is a procedure for distributing a new code image over the air in order to update programs. Due to the fact that WSNs are mostly deployed in unattended and hostile environments, secure code dissemination ensuring authenticity and integrity is essential. Recent works on dynamic packet size control in WSNs allow enhancing the energy efficiency of code dissemination by dynamically changing the packet size on the basis of link quality. However, the authentication tokens attached by the base station become useless in the next hop where the packet size can vary according to the link quality of the next hop. In this paper, we propose three source authentication schemes for code dissemination supporting dynamic packet size. Compared to traditional source authentication schemes such as μTESLA and digital signatures, our schemes provide secure source authentication under the environment, where the packet size changes in each hop, with smaller energy consumption.

  12. Source Authentication for Code Dissemination Supporting Dynamic Packet Size in Wireless Sensor Networks †

    Science.gov (United States)

    Kim, Daehee; Kim, Dongwan; An, Sunshin

    2016-01-01

    Code dissemination in wireless sensor networks (WSNs) is a procedure for distributing a new code image over the air in order to update programs. Due to the fact that WSNs are mostly deployed in unattended and hostile environments, secure code dissemination ensuring authenticity and integrity is essential. Recent works on dynamic packet size control in WSNs allow enhancing the energy efficiency of code dissemination by dynamically changing the packet size on the basis of link quality. However, the authentication tokens attached by the base station become useless in the next hop where the packet size can vary according to the link quality of the next hop. In this paper, we propose three source authentication schemes for code dissemination supporting dynamic packet size. Compared to traditional source authentication schemes such as μTESLA and digital signatures, our schemes provide secure source authentication under the environment, where the packet size changes in each hop, with smaller energy consumption. PMID:27409616

  13. Building guide : how to build Xyce from source code.

    Energy Technology Data Exchange (ETDEWEB)

    Keiter, Eric Richard; Russo, Thomas V.; Schiek, Richard Louis; Sholander, Peter E.; Thornquist, Heidi K.; Mei, Ting; Verley, Jason C.

    2013-08-01

    While Xyce uses the Autoconf and Automake system to configure builds, it is often necessary to perform more than the customary %E2%80%9C./configure%E2%80%9D builds many open source users have come to expect. This document describes the steps needed to get Xyce built on a number of common platforms.

  14. Low complexity source and channel coding for mm-wave hybrid fiber-wireless links

    DEFF Research Database (Denmark)

    Lebedev, Alexander; Vegas Olmos, Juan José; Pang, Xiaodan

    2014-01-01

    We report on the performance of channel and source coding applied for an experimentally realized hybrid fiber-wireless W-band link. Error control coding performance is presented for a wireless propagation distance of 3 m and 20 km fiber transmission. We report on peak signal-to-noise ratio perfor...

  15. Code of conduct on the safety and security of radioactive sources

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    2001-03-01

    The objective of this Code is to achieve and maintain a high level of safety and security of radioactive sources through the development, harmonization and enforcement of national policies, laws and regulations, and through tile fostering of international co-operation. In particular, this Code addresses the establishment of an adequate system of regulatory control from the production of radioactive sources to their final disposal, and a system for the restoration of such control if it has been lost.

  16. Automated Source Code Analysis to Identify and Remove Software Security Vulnerabilities: Case Studies on Java Programs

    OpenAIRE

    Natarajan Meghanathan

    2013-01-01

    The high-level contribution of this paper is to illustrate the development of generic solution strategies to remove software security vulnerabilities that could be identified using automated tools for source code analysis on software programs (developed in Java). We use the Source Code Analyzer and Audit Workbench automated tools, developed by HP Fortify Inc., for our testing purposes. We present case studies involving a file writer program embedded with features for password validation, and ...

  17. Code of conduct on the safety and security of radioactive sources

    International Nuclear Information System (INIS)

    2001-03-01

    The objective of this Code is to achieve and maintain a high level of safety and security of radioactive sources through the development, harmonization and enforcement of national policies, laws and regulations, and through tile fostering of international co-operation. In particular, this Code addresses the establishment of an adequate system of regulatory control from the production of radioactive sources to their final disposal, and a system for the restoration of such control if it has been lost

  18. Open-Source Development of the Petascale Reactive Flow and Transport Code PFLOTRAN

    Science.gov (United States)

    Hammond, G. E.; Andre, B.; Bisht, G.; Johnson, T.; Karra, S.; Lichtner, P. C.; Mills, R. T.

    2013-12-01

    Open-source software development has become increasingly popular in recent years. Open-source encourages collaborative and transparent software development and promotes unlimited free redistribution of source code to the public. Open-source development is good for science as it reveals implementation details that are critical to scientific reproducibility, but generally excluded from journal publications. In addition, research funds that would have been spent on licensing fees can be redirected to code development that benefits more scientists. In 2006, the developers of PFLOTRAN open-sourced their code under the U.S. Department of Energy SciDAC-II program. Since that time, the code has gained popularity among code developers and users from around the world seeking to employ PFLOTRAN to simulate thermal, hydraulic, mechanical and biogeochemical processes in the Earth's surface/subsurface environment. PFLOTRAN is a massively-parallel subsurface reactive multiphase flow and transport simulator designed from the ground up to run efficiently on computing platforms ranging from the laptop to leadership-class supercomputers, all from a single code base. The code employs domain decomposition for parallelism and is founded upon the well-established and open-source parallel PETSc and HDF5 frameworks. PFLOTRAN leverages modern Fortran (i.e. Fortran 2003-2008) in its extensible object-oriented design. The use of this progressive, yet domain-friendly programming language has greatly facilitated collaboration in the code's software development. Over the past year, PFLOTRAN's top-level data structures were refactored as Fortran classes (i.e. extendible derived types) to improve the flexibility of the code, ease the addition of new process models, and enable coupling to external simulators. For instance, PFLOTRAN has been coupled to the parallel electrical resistivity tomography code E4D to enable hydrogeophysical inversion while the same code base can be used as a third

  19. Distributed Remote Vector Gaussian Source Coding for Wireless Acoustic Sensor Networks

    DEFF Research Database (Denmark)

    Zahedi, Adel; Østergaard, Jan; Jensen, Søren Holdt

    2014-01-01

    In this paper, we consider the problem of remote vector Gaussian source coding for a wireless acoustic sensor network. Each node receives messages from multiple nodes in the network and decodes these messages using its own measurement of the sound field as side information. The node’s measurement...... and the estimates of the source resulting from decoding the received messages are then jointly encoded and transmitted to a neighboring node in the network. We show that for this distributed source coding scenario, one can encode a so-called conditional sufficient statistic of the sources instead of jointly...

  20. Test of Effective Solid Angle code for the efficiency calculation of volume source

    Energy Technology Data Exchange (ETDEWEB)

    Kang, M. Y.; Kim, J. H.; Choi, H. D. [Seoul National Univ., Seoul (Korea, Republic of); Sun, G. M. [Korea Atomic Energy Research Institute, Daejeon (Korea, Republic of)

    2013-10-15

    It is hard to determine a full energy (FE) absorption peak efficiency curve for an arbitrary volume source by experiment. That's why the simulation and semi-empirical methods have been preferred so far, and many works have progressed in various ways. Moens et al. determined the concept of effective solid angle by considering an attenuation effect of γ-rays in source, media and detector. This concept is based on a semi-empirical method. An Effective Solid Angle code (ESA code) has been developed for years by the Applied Nuclear Physics Group in Seoul National University. ESA code converts an experimental FE efficiency curve determined by using a standard point source to that for a volume source. To test the performance of ESA Code, we measured the point standard sources and voluminous certified reference material (CRM) sources of γ-ray, and compared with efficiency curves obtained in this study. 200∼1500 KeV energy region is fitted well. NIST X-ray mass attenuation coefficient data is used currently to check for the effect of linear attenuation only. We will use the interaction cross-section data obtained from XCOM code to check the each contributing factor like photoelectric effect, incoherent scattering and coherent scattering in the future. In order to minimize the calculation time and code simplification, optimization of algorithm is needed.

  1. RETRANS - A tool to verify the functional equivalence of automatically generated source code with its specification

    International Nuclear Information System (INIS)

    Miedl, H.

    1998-01-01

    Following the competent technical standards (e.g. IEC 880) it is necessary to verify each step in the development process of safety critical software. This holds also for the verification of automatically generated source code. To avoid human errors during this verification step and to limit the cost effort a tool should be used which is developed independently from the development of the code generator. For this purpose ISTec has developed the tool RETRANS which demonstrates the functional equivalence of automatically generated source code with its underlying specification. (author)

  2. Use of source term code package in the ELEBRA MX-850 system

    International Nuclear Information System (INIS)

    Guimaraes, A.C.F.; Goes, A.G.A.

    1988-12-01

    The implantation of source term code package in the ELEBRA-MX850 system is presented. The source term is formed when radioactive materials generated in nuclear fuel leakage toward containment and the external environment to reactor containment. The implantated version in the ELEBRA system are composed of five codes: MARCH 3, TRAPMELT 3, THCCA, VANESA and NAVA. The original example case was used. The example consists of a small loca accident in a PWR type reactor. A sensitivity study for the TRAPMELT 3 code was carried out, modifying the 'TIME STEP' to estimate the processing time of CPU for executing the original example case. (M.C.K.) [pt

  3. Eu-NORSEWInD - Assessment of Viability of Open Source CFD Code for the Wind Industry

    DEFF Research Database (Denmark)

    Stickland, Matt; Scanlon, Tom; Fabre, Sylvie

    2009-01-01

    Part of the overall NORSEWInD project is the use of LiDAR remote sensing (RS) systems mounted on offshore platforms to measure wind velocity profiles at a number of locations offshore. The data acquired from the offshore RS measurements will be fed into a large and novel wind speed dataset suitab...... between the results of simulations created by the commercial code FLUENT and the open source code OpenFOAM. An assessment of the ease with which the open source code can be used is also included....

  4. An Efficient SF-ISF Approach for the Slepian-Wolf Source Coding Problem

    Directory of Open Access Journals (Sweden)

    Tu Zhenyu

    2005-01-01

    Full Text Available A simple but powerful scheme exploiting the binning concept for asymmetric lossless distributed source coding is proposed. The novelty in the proposed scheme is the introduction of a syndrome former (SF in the source encoder and an inverse syndrome former (ISF in the source decoder to efficiently exploit an existing linear channel code without the need to modify the code structure or the decoding strategy. For most channel codes, the construction of SF-ISF pairs is a light task. For parallelly and serially concatenated codes and particularly parallel and serial turbo codes where this appear less obvious, an efficient way for constructing linear complexity SF-ISF pairs is demonstrated. It is shown that the proposed SF-ISF approach is simple, provenly optimal, and generally applicable to any linear channel code. Simulation using conventional and asymmetric turbo codes demonstrates a compression rate that is only 0.06 bit/symbol from the theoretical limit, which is among the best results reported so far.

  5. Evaluating Open-Source Full-Text Search Engines for Matching ICD-10 Codes.

    Science.gov (United States)

    Jurcău, Daniel-Alexandru; Stoicu-Tivadar, Vasile

    2016-01-01

    This research presents the results of evaluating multiple free, open-source engines on matching ICD-10 diagnostic codes via full-text searches. The study investigates what it takes to get an accurate match when searching for a specific diagnostic code. For each code the evaluation starts by extracting the words that make up its text and continues with building full-text search queries from the combinations of these words. The queries are then run against all the ICD-10 codes until a match indicates the code in question as a match with the highest relative score. This method identifies the minimum number of words that must be provided in order for the search engines choose the desired entry. The engines analyzed include a popular Java-based full-text search engine, a lightweight engine written in JavaScript which can even execute on the user's browser, and two popular open-source relational database management systems.

  6. Code of conduct on the safety and security of radioactive sources

    International Nuclear Information System (INIS)

    2004-01-01

    The objectives of the Code of Conduct are, through the development, harmonization and implementation of national policies, laws and regulations, and through the fostering of international co-operation, to: (i) achieve and maintain a high level of safety and security of radioactive sources; (ii) prevent unauthorized access or damage to, and loss, theft or unauthorized transfer of, radioactive sources, so as to reduce the likelihood of accidental harmful exposure to such sources or the malicious use of such sources to cause harm to individuals, society or the environment; and (iii) mitigate or minimize the radiological consequences of any accident or malicious act involving a radioactive source. These objectives should be achieved through the establishment of an adequate system of regulatory control of radioactive sources, applicable from the stage of initial production to their final disposal, and a system for the restoration of such control if it has been lost. This Code relies on existing international standards relating to nuclear, radiation, radioactive waste and transport safety and to the control of radioactive sources. It is intended to complement existing international standards in these areas. The Code of Conduct serves as guidance in general issues, legislation and regulations, regulatory bodies as well as import and export of radioactive sources. A list of radioactive sources covered by the code is provided which includes activities corresponding to thresholds of categories

  7. Code of conduct on the safety and security of radioactive sources

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    2004-01-01

    The objectives of the Code of Conduct are, through the development, harmonization and implementation of national policies, laws and regulations, and through the fostering of international co-operation, to: (i) achieve and maintain a high level of safety and security of radioactive sources; (ii) prevent unauthorized access or damage to, and loss, theft or unauthorized transfer of, radioactive sources, so as to reduce the likelihood of accidental harmful exposure to such sources or the malicious use of such sources to cause harm to individuals, society or the environment; and (iii) mitigate or minimize the radiological consequences of any accident or malicious act involving a radioactive source. These objectives should be achieved through the establishment of an adequate system of regulatory control of radioactive sources, applicable from the stage of initial production to their final disposal, and a system for the restoration of such control if it has been lost. This Code relies on existing international standards relating to nuclear, radiation, radioactive waste and transport safety and to the control of radioactive sources. It is intended to complement existing international standards in these areas. The Code of Conduct serves as guidance in general issues, legislation and regulations, regulatory bodies as well as import and export of radioactive sources. A list of radioactive sources covered by the code is provided which includes activities corresponding to thresholds of categories.

  8. Lysimeter data as input to performance assessment source term codes

    International Nuclear Information System (INIS)

    McConnell, J.W. Jr.; Rogers, R.D.; Sullivan, T.

    1992-01-01

    The Field Lysimeter Investigation: Low-Level Waste Data Base Development Program is obtaining information on the performance of radioactive waste in a disposal environment. Waste forms fabricated using ion-exchange resins from EPICOR-II c prefilters employed in the cleanup of the Three Mile Island (TMI) Nuclear Power Station are being tested to develop a low-level waste data base and to obtain information on survivability of waste forms in a disposal environment. In this paper, radionuclide releases from waste forms in the first seven years of sampling are presented and discussed. Application of lysimeter data to be used in performance assessment source term models is presented. Initial results from use of data in two models are discussed

  9. SCATTER: Source and Transport of Emplaced Radionuclides: Code documentation

    International Nuclear Information System (INIS)

    Longsine, D.E.

    1987-03-01

    SCATTER simulated several processes leading to the release of radionuclides to the site subsystem and then simulates transport via the groundwater of the released radionuclides to the biosphere. The processes accounted for to quantify release rates to a ground-water migration path include radioactive decay and production, leaching, solubilities, and the mixing of particles with incoming uncontaminated fluid. Several decay chains of arbitrary length can be considered simultaneously. The release rates then serve as source rates to a numerical technique which solves convective-dispersive transport for each decay chain. The decay chains are allowed to have branches and each member can have a different radioactive factor. Results are cast as radionuclide discharge rates to the accessible environment

  10. An efficient chaotic source coding scheme with variable-length blocks

    International Nuclear Information System (INIS)

    Lin Qiu-Zhen; Wong Kwok-Wo; Chen Jian-Yong

    2011-01-01

    An efficient chaotic source coding scheme operating on variable-length blocks is proposed. With the source message represented by a trajectory in the state space of a chaotic system, data compression is achieved when the dynamical system is adapted to the probability distribution of the source symbols. For infinite-precision computation, the theoretical compression performance of this chaotic coding approach attains that of optimal entropy coding. In finite-precision implementation, it can be realized by encoding variable-length blocks using a piecewise linear chaotic map within the precision of register length. In the decoding process, the bit shift in the register can track the synchronization of the initial value and the corresponding block. Therefore, all the variable-length blocks are decoded correctly. Simulation results show that the proposed scheme performs well with high efficiency and minor compression loss when compared with traditional entropy coding. (general)

  11. Authorship attribution of source code by using back propagation neural network based on particle swarm optimization.

    Science.gov (United States)

    Yang, Xinyu; Xu, Guoai; Li, Qi; Guo, Yanhui; Zhang, Miao

    2017-01-01

    Authorship attribution is to identify the most likely author of a given sample among a set of candidate known authors. It can be not only applied to discover the original author of plain text, such as novels, blogs, emails, posts etc., but also used to identify source code programmers. Authorship attribution of source code is required in diverse applications, ranging from malicious code tracking to solving authorship dispute or software plagiarism detection. This paper aims to propose a new method to identify the programmer of Java source code samples with a higher accuracy. To this end, it first introduces back propagation (BP) neural network based on particle swarm optimization (PSO) into authorship attribution of source code. It begins by computing a set of defined feature metrics, including lexical and layout metrics, structure and syntax metrics, totally 19 dimensions. Then these metrics are input to neural network for supervised learning, the weights of which are output by PSO and BP hybrid algorithm. The effectiveness of the proposed method is evaluated on a collected dataset with 3,022 Java files belong to 40 authors. Experiment results show that the proposed method achieves 91.060% accuracy. And a comparison with previous work on authorship attribution of source code for Java language illustrates that this proposed method outperforms others overall, also with an acceptable overhead.

  12. Joint Source-Channel Decoding of Variable-Length Codes with Soft Information: A Survey

    Directory of Open Access Journals (Sweden)

    Pierre Siohan

    2005-05-01

    Full Text Available Multimedia transmission over time-varying wireless channels presents a number of challenges beyond existing capabilities conceived so far for third-generation networks. Efficient quality-of-service (QoS provisioning for multimedia on these channels may in particular require a loosening and a rethinking of the layer separation principle. In that context, joint source-channel decoding (JSCD strategies have gained attention as viable alternatives to separate decoding of source and channel codes. A statistical framework based on hidden Markov models (HMM capturing dependencies between the source and channel coding components sets the foundation for optimal design of techniques of joint decoding of source and channel codes. The problem has been largely addressed in the research community, by considering both fixed-length codes (FLC and variable-length source codes (VLC widely used in compression standards. Joint source-channel decoding of VLC raises specific difficulties due to the fact that the segmentation of the received bitstream into source symbols is random. This paper makes a survey of recent theoretical and practical advances in the area of JSCD with soft information of VLC-encoded sources. It first describes the main paths followed for designing efficient estimators for VLC-encoded sources, the key component of the JSCD iterative structure. It then presents the main issues involved in the application of the turbo principle to JSCD of VLC-encoded sources as well as the main approaches to source-controlled channel decoding. This survey terminates by performance illustrations with real image and video decoding systems.

  13. Joint Source-Channel Decoding of Variable-Length Codes with Soft Information: A Survey

    Science.gov (United States)

    Guillemot, Christine; Siohan, Pierre

    2005-12-01

    Multimedia transmission over time-varying wireless channels presents a number of challenges beyond existing capabilities conceived so far for third-generation networks. Efficient quality-of-service (QoS) provisioning for multimedia on these channels may in particular require a loosening and a rethinking of the layer separation principle. In that context, joint source-channel decoding (JSCD) strategies have gained attention as viable alternatives to separate decoding of source and channel codes. A statistical framework based on hidden Markov models (HMM) capturing dependencies between the source and channel coding components sets the foundation for optimal design of techniques of joint decoding of source and channel codes. The problem has been largely addressed in the research community, by considering both fixed-length codes (FLC) and variable-length source codes (VLC) widely used in compression standards. Joint source-channel decoding of VLC raises specific difficulties due to the fact that the segmentation of the received bitstream into source symbols is random. This paper makes a survey of recent theoretical and practical advances in the area of JSCD with soft information of VLC-encoded sources. It first describes the main paths followed for designing efficient estimators for VLC-encoded sources, the key component of the JSCD iterative structure. It then presents the main issues involved in the application of the turbo principle to JSCD of VLC-encoded sources as well as the main approaches to source-controlled channel decoding. This survey terminates by performance illustrations with real image and video decoding systems.

  14. Fine-Grained Energy Modeling for the Source Code of a Mobile Application

    DEFF Research Database (Denmark)

    Li, Xueliang; Gallagher, John Patrick

    2016-01-01

    The goal of an energy model for source code is to lay a foundation for the application of energy-aware programming techniques. State of the art solutions are based on source-line energy information. In this paper, we present an approach to constructing a fine-grained energy model which is able...

  15. Comparison of DT neutron production codes MCUNED, ENEA-JSI source subroutine and DDT

    Energy Technology Data Exchange (ETDEWEB)

    Čufar, Aljaž, E-mail: aljaz.cufar@ijs.si [Reactor Physics Department, Jožef Stefan Institute, Jamova cesta 39, SI-1000 Ljubljana (Slovenia); Lengar, Igor; Kodeli, Ivan [Reactor Physics Department, Jožef Stefan Institute, Jamova cesta 39, SI-1000 Ljubljana (Slovenia); Milocco, Alberto [Culham Centre for Fusion Energy, Culham Science Centre, Abingdon, OX14 3DB (United Kingdom); Sauvan, Patrick [Departamento de Ingeniería Energética, E.T.S. Ingenieros Industriales, UNED, C/Juan del Rosal 12, 28040 Madrid (Spain); Conroy, Sean [VR Association, Uppsala University, Department of Physics and Astronomy, PO Box 516, SE-75120 Uppsala (Sweden); Snoj, Luka [Reactor Physics Department, Jožef Stefan Institute, Jamova cesta 39, SI-1000 Ljubljana (Slovenia)

    2016-11-01

    Highlights: • Results of three codes capable of simulating the accelerator based DT neutron generators were compared on a simple model where only a thin target made of mixture of titanium and tritium is present. Two typical deuteron beam energies, 100 keV and 250 keV, were used in the comparison. • Comparisons of the angular dependence of the total neutron flux and spectrum as well as the neutron spectrum of all the neutrons emitted from the target show general agreement of the results but also some noticeable differences. • A comparison of figures of merit of the calculations using different codes showed that the computational time necessary to achieve the same statistical uncertainty can vary for more than 30× when different codes for the simulation of the DT neutron generator are used. - Abstract: As the DT fusion reaction produces neutrons with energies significantly higher than in fission reactors, special fusion-relevant benchmark experiments are often performed using DT neutron generators. However, commonly used Monte Carlo particle transport codes such as MCNP or TRIPOLI cannot be directly used to analyze these experiments since they do not have the capabilities to model the production of DT neutrons. Three of the available approaches to model the DT neutron generator source are the MCUNED code, the ENEA-JSI DT source subroutine and the DDT code. The MCUNED code is an extension of the well-established and validated MCNPX Monte Carlo code. The ENEA-JSI source subroutine was originally prepared for the modelling of the FNG experiments using different versions of the MCNP code (−4, −5, −X) and was later extended to allow the modelling of both DT and DD neutron sources. The DDT code prepares the DT source definition file (SDEF card in MCNP) which can then be used in different versions of the MCNP code. In the paper the methods for the simulation of the DT neutron production used in the codes are briefly described and compared for the case of a

  16. IllinoisGRMHD: an open-source, user-friendly GRMHD code for dynamical spacetimes

    International Nuclear Information System (INIS)

    Etienne, Zachariah B; Paschalidis, Vasileios; Haas, Roland; Mösta, Philipp; Shapiro, Stuart L

    2015-01-01

    In the extreme violence of merger and mass accretion, compact objects like black holes and neutron stars are thought to launch some of the most luminous outbursts of electromagnetic and gravitational wave energy in the Universe. Modeling these systems realistically is a central problem in theoretical astrophysics, but has proven extremely challenging, requiring the development of numerical relativity codes that solve Einstein's equations for the spacetime, coupled to the equations of general relativistic (ideal) magnetohydrodynamics (GRMHD) for the magnetized fluids. Over the past decade, the Illinois numerical relativity (ILNR) group's dynamical spacetime GRMHD code has proven itself as a robust and reliable tool for theoretical modeling of such GRMHD phenomena. However, the code was written ‘by experts and for experts’ of the code, with a steep learning curve that would severely hinder community adoption if it were open-sourced. Here we present IllinoisGRMHD, which is an open-source, highly extensible rewrite of the original closed-source GRMHD code of the ILNR group. Reducing the learning curve was the primary focus of this rewrite, with the goal of facilitating community involvement in the code's use and development, as well as the minimization of human effort in generating new science. IllinoisGRMHD also saves computer time, generating roundoff-precision identical output to the original code on adaptive-mesh grids, but nearly twice as fast at scales of hundreds to thousands of cores. (paper)

  17. Combined Source-Channel Coding of Images under Power and Bandwidth Constraints

    Directory of Open Access Journals (Sweden)

    Fossorier Marc

    2007-01-01

    Full Text Available This paper proposes a framework for combined source-channel coding for a power and bandwidth constrained noisy channel. The framework is applied to progressive image transmission using constant envelope -ary phase shift key ( -PSK signaling over an additive white Gaussian noise channel. First, the framework is developed for uncoded -PSK signaling (with . Then, it is extended to include coded -PSK modulation using trellis coded modulation (TCM. An adaptive TCM system is also presented. Simulation results show that, depending on the constellation size, coded -PSK signaling performs 3.1 to 5.2 dB better than uncoded -PSK signaling. Finally, the performance of our combined source-channel coding scheme is investigated from the channel capacity point of view. Our framework is further extended to include powerful channel codes like turbo and low-density parity-check (LDPC codes. With these powerful codes, our proposed scheme performs about one dB away from the capacity-achieving SNR value of the QPSK channel.

  18. Combined Source-Channel Coding of Images under Power and Bandwidth Constraints

    Directory of Open Access Journals (Sweden)

    Marc Fossorier

    2007-01-01

    Full Text Available This paper proposes a framework for combined source-channel coding for a power and bandwidth constrained noisy channel. The framework is applied to progressive image transmission using constant envelope M-ary phase shift key (M-PSK signaling over an additive white Gaussian noise channel. First, the framework is developed for uncoded M-PSK signaling (with M=2k. Then, it is extended to include coded M-PSK modulation using trellis coded modulation (TCM. An adaptive TCM system is also presented. Simulation results show that, depending on the constellation size, coded M-PSK signaling performs 3.1 to 5.2 dB better than uncoded M-PSK signaling. Finally, the performance of our combined source-channel coding scheme is investigated from the channel capacity point of view. Our framework is further extended to include powerful channel codes like turbo and low-density parity-check (LDPC codes. With these powerful codes, our proposed scheme performs about one dB away from the capacity-achieving SNR value of the QPSK channel.

  19. Revised IAEA Code of Conduct on the Safety and Security of Radioactive Sources

    International Nuclear Information System (INIS)

    Wheatley, J. S.

    2004-01-01

    The revised Code of Conduct on the Safety and Security of Radioactive Sources is aimed primarily at Governments, with the objective of achieving and maintaining a high level of safety and security of radioactive sources through the development, harmonization and enforcement of national policies, laws and regulations; and through the fostering of international co-operation. It focuses on sealed radioactive sources and provides guidance on legislation, regulations and the regulatory body, and import/export controls. Nuclear materials (except for sources containing 239Pu), as defined in the Convention on the Physical Protection of Nuclear Materials, are not covered by the revised Code, nor are radioactive sources within military or defence programmes. An earlier version of the Code was published by IAEA in 2001. At that time, agreement was not reached on a number of issues, notably those relating to the creation of comprehensive national registries for radioactive sources, obligations of States exporting radioactive sources, and the possibility of unilateral declarations of support. The need to further consider these and other issues was highlighted by the events of 11th September 2001. Since then, the IAEA's Secretariat has been working closely with Member States and relevant International Organizations to achieve consensus. The text of the revised Code was finalized at a meeting of technical and legal experts in August 2003, and it was submitted to IAEA's Board of Governors for approval in September 2003, with a recommendation that the IAEA General Conference adopt it and encourage its wide implementation. The IAEA General Conference, in September 2003, endorsed the revised Code and urged States to work towards following the guidance contained within it. This paper summarizes the history behind the revised Code, its content and the outcome of the discussions within the IAEA Board of Governors and General Conference. (Author) 8 refs

  20. Development of Coupled Interface System between the FADAS Code and a Source-term Evaluation Code XSOR for CANDU Reactors

    International Nuclear Information System (INIS)

    Son, Han Seong; Song, Deok Yong; Kim, Ma Woong; Shin, Hyeong Ki; Lee, Sang Kyu; Kim, Hyun Koon

    2006-01-01

    An accident prevention system is essential to the industrial security of nuclear industry. Thus, the more effective accident prevention system will be helpful to promote safety culture as well as to acquire public acceptance for nuclear power industry. The FADAS(Following Accident Dose Assessment System) which is a part of the Computerized Advisory System for a Radiological Emergency (CARE) system in KINS is used for the prevention against nuclear accident. In order to enhance the FADAS system more effective for CANDU reactors, it is necessary to develop the various accident scenarios and reliable database of source terms. This study introduces the construction of the coupled interface system between the FADAS and the source-term evaluation code aimed to improve the applicability of the CANDU Integrated Safety Analysis System (CISAS) for CANDU reactors

  1. Joint source/channel coding of scalable video over noisy channels

    Energy Technology Data Exchange (ETDEWEB)

    Cheung, G.; Zakhor, A. [Department of Electrical Engineering and Computer Sciences University of California Berkeley, California94720 (United States)

    1997-01-01

    We propose an optimal bit allocation strategy for a joint source/channel video codec over noisy channel when the channel state is assumed to be known. Our approach is to partition source and channel coding bits in such a way that the expected distortion is minimized. The particular source coding algorithm we use is rate scalable and is based on 3D subband coding with multi-rate quantization. We show that using this strategy, transmission of video over very noisy channels still renders acceptable visual quality, and outperforms schemes that use equal error protection only. The flexibility of the algorithm also permits the bit allocation to be selected optimally when the channel state is in the form of a probability distribution instead of a deterministic state. {copyright} {ital 1997 American Institute of Physics.}

  2. Remodularizing Java Programs for Improved Locality of Feature Implementations in Source Code

    DEFF Research Database (Denmark)

    Olszak, Andrzej; Jørgensen, Bo Nørregaard

    2011-01-01

    Explicit traceability between features and source code is known to help programmers to understand and modify programs during maintenance tasks. However, the complex relations between features and their implementations are not evident from the source code of object-oriented Java programs....... Consequently, the implementations of individual features are difficult to locate, comprehend, and modify in isolation. In this paper, we present a novel remodularization approach that improves the representation of features in the source code of Java programs. Both forward- and reverse restructurings...... are supported through on-demand bidirectional restructuring between feature-oriented and object-oriented decompositions. The approach includes a feature location phase based of tracing program execution, a feature representation phase that reallocates classes into a new package structure based on single...

  3. Code of conduct on the safety and security of radioactive sources

    International Nuclear Information System (INIS)

    Anon.

    2001-01-01

    The objective of the code of conduct is to achieve and maintain a high level of safety and security of radioactive sources through the development, harmonization and enforcement of national policies, laws and regulations, and through the fostering of international co-operation. In particular, this code addresses the establishment of an adequate system of regulatory control from the production of radioactive sources to their final disposal, and a system for the restoration of such control if it has been lost. (N.C.)

  4. Documentation for grants equal to tax model: Volume 3, Source code

    International Nuclear Information System (INIS)

    Boryczka, M.K.

    1986-01-01

    The GETT model is capable of forecasting the amount of tax liability associated with all property owned and all activities undertaken by the US Department of Energy (DOE) in site characterization and repository development. The GETT program is a user-friendly, menu-driven model developed using dBASE III/trademark/, a relational data base management system. The data base for GETT consists primarily of eight separate dBASE III/trademark/ files corresponding to each of the eight taxes (real property, personal property, corporate income, franchise, sales, use, severance, and excise) levied by State and local jurisdictions on business property and activity. Additional smaller files help to control model inputs and reporting options. Volume 3 of the GETT model documentation is the source code. The code is arranged primarily by the eight tax types. Other code files include those for JURISDICTION, SIMULATION, VALIDATION, TAXES, CHANGES, REPORTS, GILOT, and GETT. The code has been verified through hand calculations

  5. WASTK: A Weighted Abstract Syntax Tree Kernel Method for Source Code Plagiarism Detection

    Directory of Open Access Journals (Sweden)

    Deqiang Fu

    2017-01-01

    Full Text Available In this paper, we introduce a source code plagiarism detection method, named WASTK (Weighted Abstract Syntax Tree Kernel, for computer science education. Different from other plagiarism detection methods, WASTK takes some aspects other than the similarity between programs into account. WASTK firstly transfers the source code of a program to an abstract syntax tree and then gets the similarity by calculating the tree kernel of two abstract syntax trees. To avoid misjudgment caused by trivial code snippets or frameworks given by instructors, an idea similar to TF-IDF (Term Frequency-Inverse Document Frequency in the field of information retrieval is applied. Each node in an abstract syntax tree is assigned a weight by TF-IDF. WASTK is evaluated on different datasets and, as a result, performs much better than other popular methods like Sim and JPlag.

  6. Rascal: A domain specific language for source code analysis and manipulation

    NARCIS (Netherlands)

    P. Klint (Paul); T. van der Storm (Tijs); J.J. Vinju (Jurgen); A. Walenstein; S. Schuppe

    2009-01-01

    htmlabstractMany automated software engineering tools require tight integration of techniques for source code analysis and manipulation. State-of-the-art tools exist for both, but the domains have remained notoriously separate because different computational paradigms fit each domain best. This

  7. RASCAL : a domain specific language for source code analysis and manipulationa

    NARCIS (Netherlands)

    Klint, P.; Storm, van der T.; Vinju, J.J.

    2009-01-01

    Many automated software engineering tools require tight integration of techniques for source code analysis and manipulation. State-of-the-art tools exist for both, but the domains have remained notoriously separate because different computational paradigms fit each domain best. This impedance

  8. From system requirements to source code: transitions in UML and RUP

    Directory of Open Access Journals (Sweden)

    Stanisław Wrycza

    2011-06-01

    Full Text Available There are many manuals explaining language specification among UML-related books. Only some of books mentioned concentrate on practical aspects of using the UML language in effective way using CASE tools and RUP. The current paper presents transitions from system requirements specification to structural source code, useful while developing an information system.

  9. Phase 1 Validation Testing and Simulation for the WEC-Sim Open Source Code

    Science.gov (United States)

    Ruehl, K.; Michelen, C.; Gunawan, B.; Bosma, B.; Simmons, A.; Lomonaco, P.

    2015-12-01

    WEC-Sim is an open source code to model wave energy converters performance in operational waves, developed by Sandia and NREL and funded by the US DOE. The code is a time-domain modeling tool developed in MATLAB/SIMULINK using the multibody dynamics solver SimMechanics, and solves the WEC's governing equations of motion using the Cummins time-domain impulse response formulation in 6 degrees of freedom. The WEC-Sim code has undergone verification through code-to-code comparisons; however validation of the code has been limited to publicly available experimental data sets. While these data sets provide preliminary code validation, the experimental tests were not explicitly designed for code validation, and as a result are limited in their ability to validate the full functionality of the WEC-Sim code. Therefore, dedicated physical model tests for WEC-Sim validation have been performed. This presentation provides an overview of the WEC-Sim validation experimental wave tank tests performed at the Oregon State University's Directional Wave Basin at Hinsdale Wave Research Laboratory. Phase 1 of experimental testing was focused on device characterization and completed in Fall 2015. Phase 2 is focused on WEC performance and scheduled for Winter 2015/2016. These experimental tests were designed explicitly to validate the performance of WEC-Sim code, and its new feature additions. Upon completion, the WEC-Sim validation data set will be made publicly available to the wave energy community. For the physical model test, a controllable model of a floating wave energy converter has been designed and constructed. The instrumentation includes state-of-the-art devices to measure pressure fields, motions in 6 DOF, multi-axial load cells, torque transducers, position transducers, and encoders. The model also incorporates a fully programmable Power-Take-Off system which can be used to generate or absorb wave energy. Numerical simulations of the experiments using WEC-Sim will be

  10. Time-dependent anisotropic external sources in transient 3-D transport code TORT-TD

    International Nuclear Information System (INIS)

    Seubert, A.; Pautz, A.; Becker, M.; Dagan, R.

    2009-01-01

    This paper describes the implementation of a time-dependent distributed external source in TORT-TD by explicitly considering the external source in the ''fixed-source'' term of the implicitly time-discretised 3-D discrete ordinates transport equation. Anisotropy of the external source is represented by a spherical harmonics series expansion similar to the angular fluxes. The YALINA-Thermal subcritical assembly serves as a test case. The configuration with 280 fuel rods has been analysed with TORT-TD using cross sections in 18 energy groups and P1 scattering order generated by the KAPROS code system. Good agreement is achieved concerning the multiplication factor. The response of the system to an artificial time-dependent source consisting of two square-wave pulses demonstrates the time-dependent external source capability of TORT-TD. The result is physically plausible as judged from validation calculations. (orig.)

  11. Coded moderator approach for fast neutron source detection and localization at standoff

    Energy Technology Data Exchange (ETDEWEB)

    Littell, Jennifer [Department of Nuclear Engineering, University of Tennessee, 305 Pasqua Engineering Building, Knoxville, TN 37996 (United States); Lukosi, Eric, E-mail: elukosi@utk.edu [Department of Nuclear Engineering, University of Tennessee, 305 Pasqua Engineering Building, Knoxville, TN 37996 (United States); Institute for Nuclear Security, University of Tennessee, 1640 Cumberland Avenue, Knoxville, TN 37996 (United States); Hayward, Jason; Milburn, Robert; Rowan, Allen [Department of Nuclear Engineering, University of Tennessee, 305 Pasqua Engineering Building, Knoxville, TN 37996 (United States)

    2015-06-01

    Considering the need for directional sensing at standoff for some security applications and scenarios where a neutron source may be shielded by high Z material that nearly eliminates the source gamma flux, this work focuses on investigating the feasibility of using thermal neutron sensitive boron straw detectors for fast neutron source detection and localization. We utilized MCNPX simulations to demonstrate that, through surrounding the boron straw detectors by a HDPE coded moderator, a source-detector orientation-specific response enables potential 1D source localization in a high neutron detection efficiency design. An initial test algorithm has been developed in order to confirm the viability of this detector system's localization capabilities which resulted in identification of a 1 MeV neutron source with a strength equivalent to 8 kg WGPu at 50 m standoff within ±11°.

  12. Uncertainties in source term calculations generated by the ORIGEN2 computer code for Hanford Production Reactors

    International Nuclear Information System (INIS)

    Heeb, C.M.

    1991-03-01

    The ORIGEN2 computer code is the primary calculational tool for computing isotopic source terms for the Hanford Environmental Dose Reconstruction (HEDR) Project. The ORIGEN2 code computes the amounts of radionuclides that are created or remain in spent nuclear fuel after neutron irradiation and radioactive decay have occurred as a result of nuclear reactor operation. ORIGEN2 was chosen as the primary code for these calculations because it is widely used and accepted by the nuclear industry, both in the United States and the rest of the world. Its comprehensive library of over 1,600 nuclides includes any possible isotope of interest to the HEDR Project. It is important to evaluate the uncertainties expected from use of ORIGEN2 in the HEDR Project because these uncertainties may have a pivotal impact on the final accuracy and credibility of the results of the project. There are three primary sources of uncertainty in an ORIGEN2 calculation: basic nuclear data uncertainty in neutron cross sections, radioactive decay constants, energy per fission, and fission product yields; calculational uncertainty due to input data; and code uncertainties (i.e., numerical approximations, and neutron spectrum-averaged cross-section values from the code library). 15 refs., 5 figs., 5 tabs

  13. Code of practice for the use of sealed radioactive sources in borehole logging (1998)

    International Nuclear Information System (INIS)

    1989-12-01

    The purpose of this code is to establish working practices, procedures and protective measures which will aid in keeping doses, arising from the use of borehole logging equipment containing sealed radioactive sources, to as low as reasonably achievable and to ensure that the dose-equivalent limits specified in the National Health and Medical Research Council s radiation protection standards, are not exceeded. This code applies to all situations and practices where a sealed radioactive source or sources are used through wireline logging for investigating the physical properties of the geological sequence, or any fluids contained in the geological sequence, or the properties of the borehole itself, whether casing, mudcake or borehole fluids. The radiation protection standards specify dose-equivalent limits for two categories: radiation workers and members of the public. 3 refs., tabs., ills

  14. Experimental benchmark of the NINJA code for application to the Linac4 H- ion source plasma

    Science.gov (United States)

    Briefi, S.; Mattei, S.; Rauner, D.; Lettry, J.; Tran, M. Q.; Fantz, U.

    2017-10-01

    For a dedicated performance optimization of negative hydrogen ion sources applied at particle accelerators, a detailed assessment of the plasma processes is required. Due to the compact design of these sources, diagnostic access is typically limited to optical emission spectroscopy yielding only line-of-sight integrated results. In order to allow for a spatially resolved investigation, the electromagnetic particle-in-cell Monte Carlo collision code NINJA has been developed for the Linac4 ion source at CERN. This code considers the RF field generated by the ICP coil as well as the external static magnetic fields and calculates self-consistently the resulting discharge properties. NINJA is benchmarked at the diagnostically well accessible lab experiment CHARLIE (Concept studies for Helicon Assisted RF Low pressure Ion sourcEs) at varying RF power and gas pressure. A good general agreement is observed between experiment and simulation although the simulated electron density trends for varying pressure and power as well as the absolute electron temperature values deviate slightly from the measured ones. This can be explained by the assumption of strong inductive coupling in NINJA, whereas the CHARLIE discharges show the characteristics of loosely coupled plasmas. For the Linac4 plasma, this assumption is valid. Accordingly, both the absolute values of the accessible plasma parameters and their trends for varying RF power agree well in measurement and simulation. At varying RF power, the H- current extracted from the Linac4 source peaks at 40 kW. For volume operation, this is perfectly reflected by assessing the processes in front of the extraction aperture based on the simulation results where the highest H- density is obtained for the same power level. In surface operation, the production of negative hydrogen ions at the converter surface can only be considered by specialized beam formation codes, which require plasma parameters as input. It has been demonstrated that

  15. Identification of Sparse Audio Tampering Using Distributed Source Coding and Compressive Sensing Techniques

    Directory of Open Access Journals (Sweden)

    Valenzise G

    2009-01-01

    Full Text Available In the past few years, a large amount of techniques have been proposed to identify whether a multimedia content has been illegally tampered or not. Nevertheless, very few efforts have been devoted to identifying which kind of attack has been carried out, especially due to the large data required for this task. We propose a novel hashing scheme which exploits the paradigms of compressive sensing and distributed source coding to generate a compact hash signature, and we apply it to the case of audio content protection. The audio content provider produces a small hash signature by computing a limited number of random projections of a perceptual, time-frequency representation of the original audio stream; the audio hash is given by the syndrome bits of an LDPC code applied to the projections. At the content user side, the hash is decoded using distributed source coding tools. If the tampering is sparsifiable or compressible in some orthonormal basis or redundant dictionary, it is possible to identify the time-frequency position of the attack, with a hash size as small as 200 bits/second; the bit saving obtained by introducing distributed source coding ranges between 20% to 70%.

  16. Optimal source coding, removable noise elimination, and natural coordinate system construction for general vector sources using replicator neural networks

    Science.gov (United States)

    Hecht-Nielsen, Robert

    1997-04-01

    A new universal one-chart smooth manifold model for vector information sources is introduced. Natural coordinates (a particular type of chart) for such data manifolds are then defined. Uniformly quantized natural coordinates form an optimal vector quantization code for a general vector source. Replicator neural networks (a specialized type of multilayer perceptron with three hidden layers) are the introduced. As properly configured examples of replicator networks approach minimum mean squared error (e.g., via training and architecture adjustment using randomly chosen vectors from the source), these networks automatically develop a mapping which, in the limit, produces natural coordinates for arbitrary source vectors. The new concept of removable noise (a noise model applicable to a wide variety of real-world noise processes) is then discussed. Replicator neural networks, when configured to approach minimum mean squared reconstruction error (e.g., via training and architecture adjustment on randomly chosen examples from a vector source, each with randomly chosen additive removable noise contamination), in the limit eliminate removable noise and produce natural coordinates for the data vector portions of the noise-corrupted source vectors. Consideration regarding selection of the dimension of a data manifold source model and the training/configuration of replicator neural networks are discussed.

  17. SOURCES-3A: A code for calculating (α, n), spontaneous fission, and delayed neutron sources and spectra

    International Nuclear Information System (INIS)

    Perry, R.T.; Wilson, W.B.; Charlton, W.S.

    1998-04-01

    In many systems, it is imperative to have accurate knowledge of all significant sources of neutrons due to the decay of radionuclides. These sources can include neutrons resulting from the spontaneous fission of actinides, the interaction of actinide decay α-particles in (α,n) reactions with low- or medium-Z nuclides, and/or delayed neutrons from the fission products of actinides. Numerous systems exist in which these neutron sources could be important. These include, but are not limited to, clean and spent nuclear fuel (UO 2 , ThO 2 , MOX, etc.), enrichment plant operations (UF 6 , PuF 4 , etc.), waste tank studies, waste products in borosilicate glass or glass-ceramic mixtures, and weapons-grade plutonium in storage containers. SOURCES-3A is a computer code that determines neutron production rates and spectra from (α,n) reactions, spontaneous fission, and delayed neutron emission due to the decay of radionuclides in homogeneous media (i.e., a mixture of α-emitting source material and low-Z target material) and in interface problems (i.e., a slab of α-emitting source material in contact with a slab of low-Z target material). The code is also capable of calculating the neutron production rates due to (α,n) reactions induced by a monoenergetic beam of α-particles incident on a slab of target material. Spontaneous fission spectra are calculated with evaluated half-life, spontaneous fission branching, and Watt spectrum parameters for 43 actinides. The (α,n) spectra are calculated using an assumed isotropic angular distribution in the center-of-mass system with a library of 89 nuclide decay α-particle spectra, 24 sets of measured and/or evaluated (α,n) cross sections and product nuclide level branching fractions, and functional α-particle stopping cross sections for Z < 106. The delayed neutron spectra are taken from an evaluated library of 105 precursors. The code outputs the magnitude and spectra of the resultant neutron source. It also provides an

  18. Time-dependent anisotropic distributed source capability in transient 3-d transport code tort-TD

    International Nuclear Information System (INIS)

    Seubert, A.; Pautz, A.; Becker, M.; Dagan, R.

    2009-01-01

    The transient 3-D discrete ordinates transport code TORT-TD has been extended to account for time-dependent anisotropic distributed external sources. The extension aims at the simulation of the pulsed neutron source in the YALINA-Thermal subcritical assembly. Since feedback effects are not relevant in this zero-power configuration, this offers a unique opportunity to validate the time-dependent neutron kinetics of TORT-TD with experimental data. The extensions made in TORT-TD to incorporate a time-dependent anisotropic external source are described. The steady state of the YALINA-Thermal assembly and its response to an artificial square-wave source pulse sequence have been analysed with TORT-TD using pin-wise homogenised cross sections in 18 prompt energy groups with P 1 scattering order and 8 delayed neutron groups. The results demonstrate the applicability of TORT-TD to subcritical problems with a time-dependent external source. (authors)

  19. Imaging x-ray sources at a finite distance in coded-mask instruments

    International Nuclear Information System (INIS)

    Donnarumma, Immacolata; Pacciani, Luigi; Lapshov, Igor; Evangelista, Yuri

    2008-01-01

    We present a method for the correction of beam divergence in finite distance sources imaging through coded-mask instruments. We discuss the defocusing artifacts induced by the finite distance showing two different approaches to remove such spurious effects. We applied our method to one-dimensional (1D) coded-mask systems, although it is also applicable in two-dimensional systems. We provide a detailed mathematical description of the adopted method and of the systematics introduced in the reconstructed image (e.g., the fraction of source flux collected in the reconstructed peak counts). The accuracy of this method was tested by simulating pointlike and extended sources at a finite distance with the instrumental setup of the SuperAGILE experiment, the 1D coded-mask x-ray imager onboard the AGILE (Astro-rivelatore Gamma a Immagini Leggero) mission. We obtained reconstructed images of good quality and high source location accuracy. Finally we show the results obtained by applying this method to real data collected during the calibration campaign of SuperAGILE. Our method was demonstrated to be a powerful tool to investigate the imaging response of the experiment, particularly the absorption due to the materials intercepting the line of sight of the instrument and the conversion between detector pixel and sky direction

  20. Hybrid digital-analog coding with bandwidth expansion for correlated Gaussian sources under Rayleigh fading

    Science.gov (United States)

    Yahampath, Pradeepa

    2017-12-01

    Consider communicating a correlated Gaussian source over a Rayleigh fading channel with no knowledge of the channel signal-to-noise ratio (CSNR) at the transmitter. In this case, a digital system cannot be optimal for a range of CSNRs. Analog transmission however is optimal at all CSNRs, if the source and channel are memoryless and bandwidth matched. This paper presents new hybrid digital-analog (HDA) systems for sources with memory and channels with bandwidth expansion, which outperform both digital-only and analog-only systems over a wide range of CSNRs. The digital part is either a predictive quantizer or a transform code, used to achieve a coding gain. Analog part uses linear encoding to transmit the quantization error which improves the performance under CSNR variations. The hybrid encoder is optimized to achieve the minimum AMMSE (average minimum mean square error) over the CSNR distribution. To this end, analytical expressions are derived for the AMMSE of asymptotically optimal systems. It is shown that the outage CSNR of the channel code and the analog-digital power allocation must be jointly optimized to achieve the minimum AMMSE. In the case of HDA predictive quantization, a simple algorithm is presented to solve the optimization problem. Experimental results are presented for both Gauss-Markov sources and speech signals.

  1. A plug-in to Eclipse for VHDL source codes: functionalities

    Science.gov (United States)

    Niton, B.; Poźniak, K. T.; Romaniuk, R. S.

    The paper presents an original application, written by authors, which supports writing and edition of source codes in VHDL language. It is a step towards fully automatic, augmented code writing for photonic and electronic systems, also systems based on FPGA and/or DSP processors. An implementation is described, based on VEditor. VEditor is a free license program. Thus, the work presented in this paper supplements and extends this free license. The introduction characterizes shortly available tools on the market which serve for aiding the design processes of electronic systems in VHDL. Particular attention was put on plug-ins to the Eclipse environment and Emacs program. There are presented detailed properties of the written plug-in such as: programming extension conception, and the results of the activities of formatter, re-factorizer, code hider, and other new additions to the VEditor program.

  2. Beyond the Business Model: Incentives for Organizations to Publish Software Source Code

    Science.gov (United States)

    Lindman, Juho; Juutilainen, Juha-Pekka; Rossi, Matti

    The software stack opened under Open Source Software (OSS) licenses is growing rapidly. Commercial actors have released considerable amounts of previously proprietary source code. These actions beg the question why companies choose a strategy based on giving away software assets? Research on outbound OSS approach has tried to answer this question with the concept of the “OSS business model”. When studying the reasons for code release, we have observed that the business model concept is too generic to capture the many incentives organizations have. Conversely, in this paper we investigate empirically what the companies’ incentives are by means of an exploratory case study of three organizations in different stages of their code release. Our results indicate that the companies aim to promote standardization, obtain development resources, gain cost savings, improve the quality of software, increase the trustworthiness of software, or steer OSS communities. We conclude that future research on outbound OSS could benefit from focusing on the heterogeneous incentives for code release rather than on revenue models.

  3. CACTI: free, open-source software for the sequential coding of behavioral interactions.

    Science.gov (United States)

    Glynn, Lisa H; Hallgren, Kevin A; Houck, Jon M; Moyers, Theresa B

    2012-01-01

    The sequential analysis of client and clinician speech in psychotherapy sessions can help to identify and characterize potential mechanisms of treatment and behavior change. Previous studies required coding systems that were time-consuming, expensive, and error-prone. Existing software can be expensive and inflexible, and furthermore, no single package allows for pre-parsing, sequential coding, and assignment of global ratings. We developed a free, open-source, and adaptable program to meet these needs: The CASAA Application for Coding Treatment Interactions (CACTI). Without transcripts, CACTI facilitates the real-time sequential coding of behavioral interactions using WAV-format audio files. Most elements of the interface are user-modifiable through a simple XML file, and can be further adapted using Java through the terms of the GNU Public License. Coding with this software yields interrater reliabilities comparable to previous methods, but at greatly reduced time and expense. CACTI is a flexible research tool that can simplify psychotherapy process research, and has the potential to contribute to the improvement of treatment content and delivery.

  4. Survey of source code metrics for evaluating testability of object oriented systems

    OpenAIRE

    Shaheen , Muhammad Rabee; Du Bousquet , Lydie

    2010-01-01

    Software testing is costly in terms of time and funds. Testability is a software characteristic that aims at producing systems easy to test. Several metrics have been proposed to identify the testability weaknesses. But it is sometimes difficult to be convinced that those metrics are really related with testability. This article is a critical survey of the source-code based metrics proposed in the literature for object-oriented software testability. It underlines the necessity to provide test...

  5. NEACRP comparison of source term codes for the radiation protection assessment of transportation packages

    International Nuclear Information System (INIS)

    Broadhead, B.L.; Locke, H.F.; Avery, A.F.

    1994-01-01

    The results for Problems 5 and 6 of the NEACRP code comparison as submitted by six participating countries are presented in summary. These problems concentrate on the prediction of the neutron and gamma-ray sources arising in fuel after a specified irradiation, the fuel being uranium oxide for problem 5 and a mixture of uranium and plutonium oxides for problem 6. In both problems the predicted neutron sources are in good agreement for all participants. For gamma rays, however, there are differences, largely due to the omission of bremsstrahlung in some calculations

  6. Multi-rate control over AWGN channels via analog joint source-channel coding

    KAUST Repository

    Khina, Anatoly; Pettersson, Gustav M.; Kostina, Victoria; Hassibi, Babak

    2017-01-01

    We consider the problem of controlling an unstable plant over an additive white Gaussian noise (AWGN) channel with a transmit power constraint, where the signaling rate of communication is larger than the sampling rate (for generating observations and applying control inputs) of the underlying plant. Such a situation is quite common since sampling is done at a rate that captures the dynamics of the plant and which is often much lower than the rate that can be communicated. This setting offers the opportunity of improving the system performance by employing multiple channel uses to convey a single message (output plant observation or control input). Common ways of doing so are through either repeating the message, or by quantizing it to a number of bits and then transmitting a channel coded version of the bits whose length is commensurate with the number of channel uses per sampled message. We argue that such “separated source and channel coding” can be suboptimal and propose to perform joint source-channel coding. Since the block length is short we obviate the need to go to the digital domain altogether and instead consider analog joint source-channel coding. For the case where the communication signaling rate is twice the sampling rate, we employ the Archimedean bi-spiral-based Shannon-Kotel'nikov analog maps to show significant improvement in stability margins and linear-quadratic Gaussian (LQG) costs over simple schemes that employ repetition.

  7. Multi-rate control over AWGN channels via analog joint source-channel coding

    KAUST Repository

    Khina, Anatoly

    2017-01-05

    We consider the problem of controlling an unstable plant over an additive white Gaussian noise (AWGN) channel with a transmit power constraint, where the signaling rate of communication is larger than the sampling rate (for generating observations and applying control inputs) of the underlying plant. Such a situation is quite common since sampling is done at a rate that captures the dynamics of the plant and which is often much lower than the rate that can be communicated. This setting offers the opportunity of improving the system performance by employing multiple channel uses to convey a single message (output plant observation or control input). Common ways of doing so are through either repeating the message, or by quantizing it to a number of bits and then transmitting a channel coded version of the bits whose length is commensurate with the number of channel uses per sampled message. We argue that such “separated source and channel coding” can be suboptimal and propose to perform joint source-channel coding. Since the block length is short we obviate the need to go to the digital domain altogether and instead consider analog joint source-channel coding. For the case where the communication signaling rate is twice the sampling rate, we employ the Archimedean bi-spiral-based Shannon-Kotel\\'nikov analog maps to show significant improvement in stability margins and linear-quadratic Gaussian (LQG) costs over simple schemes that employ repetition.

  8. Source-term model for the SYVAC3-NSURE performance assessment code

    International Nuclear Information System (INIS)

    Rowat, J.H.; Rattan, D.S.; Dolinar, G.M.

    1996-11-01

    Radionuclide contaminants in wastes emplaced in disposal facilities will not remain in those facilities indefinitely. Engineered barriers will eventually degrade, allowing radioactivity to escape from the vault. The radionuclide release rate from a low-level radioactive waste (LLRW) disposal facility, the source term, is a key component in the performance assessment of the disposal system. This report describes the source-term model that has been implemented in Ver. 1.03 of the SYVAC3-NSURE (Systems Variability Analysis Code generation 3-Near Surface Repository) code. NSURE is a performance assessment code that evaluates the impact of near-surface disposal of LLRW through the groundwater pathway. The source-term model described here was developed for the Intrusion Resistant Underground Structure (IRUS) disposal facility, which is a vault that is to be located in the unsaturated overburden at AECL's Chalk River Laboratories. The processes included in the vault model are roof and waste package performance, and diffusion, advection and sorption of radionuclides in the vault backfill. The model presented here was developed for the IRUS vault; however, it is applicable to other near-surface disposal facilities. (author). 40 refs., 6 figs

  9. D-DSC: Decoding Delay-based Distributed Source Coding for Internet of Sensing Things.

    Science.gov (United States)

    Aktas, Metin; Kuscu, Murat; Dinc, Ergin; Akan, Ozgur B

    2018-01-01

    Spatial correlation between densely deployed sensor nodes in a wireless sensor network (WSN) can be exploited to reduce the power consumption through a proper source coding mechanism such as distributed source coding (DSC). In this paper, we propose the Decoding Delay-based Distributed Source Coding (D-DSC) to improve the energy efficiency of the classical DSC by employing the decoding delay concept which enables the use of the maximum correlated portion of sensor samples during the event estimation. In D-DSC, network is partitioned into clusters, where the clusterheads communicate their uncompressed samples carrying the side information, and the cluster members send their compressed samples. Sink performs joint decoding of the compressed and uncompressed samples and then reconstructs the event signal using the decoded sensor readings. Based on the observed degree of the correlation among sensor samples, the sink dynamically updates and broadcasts the varying compression rates back to the sensor nodes. Simulation results for the performance evaluation reveal that D-DSC can achieve reliable and energy-efficient event communication and estimation for practical signal detection/estimation applications having massive number of sensors towards the realization of Internet of Sensing Things (IoST).

  10. Application of the source term code package to obtain a specific source term for the Laguna Verde Nuclear Power Plant

    International Nuclear Information System (INIS)

    Souto, F.J.

    1991-06-01

    The main objective of the project was to use the Source Term Code Package (STCP) to obtain a specific source term for those accident sequences deemed dominant as a result of probabilistic safety analyses (PSA) for the Laguna Verde Nuclear Power Plant (CNLV). The following programme has been carried out to meet this objective: (a) implementation of the STCP, (b) acquisition of specific data for CNLV to execute the STCP, and (c) calculations of specific source terms for accident sequences at CNLV. The STCP has been implemented and validated on CDC 170/815 and CDC 180/860 main frames as well as on a Micro VAX 3800 system. In order to get a plant-specific source term, data on the CNLV including initial core inventory, burn-up, primary containment structures, and materials used for the calculations have been obtained. Because STCP does not explicitly model containment failure, dry well failure in the form of a catastrophic rupture has been assumed. One of the most significant sequences from the point of view of possible off-site risk is the loss of off-site power with failure of the diesel generators and simultaneous loss of high pressure core spray and reactor core isolation cooling systems. The probability for that event is approximately 4.5 x 10 -6 . This sequence has been analysed in detail and the release fractions of radioisotope groups are given in the full report. 18 refs, 4 figs, 3 tabs

  11. The European source term code ESTER - basic ideas and tools for coupling of ATHLET and ESTER

    International Nuclear Information System (INIS)

    Schmidt, F.; Schuch, A.; Hinkelmann, M.

    1993-04-01

    The French software house CISI and IKE of the University of Stuttgart have developed during 1990 and 1991 in the frame of the Shared Cost Action Reactor Safety the informatic structure of the European Source TERm Evaluation System (ESTER). Due to this work tools became available which allow to unify on an European basis both code development and code application in the area of severe core accident research. The behaviour of reactor cores is determined by thermal hydraulic conditions. Therefore for the development of ESTER it was important to investigate how to integrate thermal hydraulic code systems with ESTER applications. This report describes the basic ideas of ESTER and improvements of ESTER tools in view of a possible coupling of the thermal hydraulic code system ATHLET and ESTER. Due to the work performed during this project the ESTER tools became the most modern informatic tools presently available in the area of severe accident research. A sample application is given which demonstrates the use of the new tools. (orig.) [de

  12. GRHydro: a new open-source general-relativistic magnetohydrodynamics code for the Einstein toolkit

    International Nuclear Information System (INIS)

    Mösta, Philipp; Haas, Roland; Ott, Christian D; Reisswig, Christian; Mundim, Bruno C; Faber, Joshua A; Noble, Scott C; Bode, Tanja; Löffler, Frank; Schnetter, Erik

    2014-01-01

    We present the new general-relativistic magnetohydrodynamics (GRMHD) capabilities of the Einstein toolkit, an open-source community-driven numerical relativity and computational relativistic astrophysics code. The GRMHD extension of the toolkit builds upon previous releases and implements the evolution of relativistic magnetized fluids in the ideal MHD limit in fully dynamical spacetimes using the same shock-capturing techniques previously applied to hydrodynamical evolution. In order to maintain the divergence-free character of the magnetic field, the code implements both constrained transport and hyperbolic divergence cleaning schemes. We present test results for a number of MHD tests in Minkowski and curved spacetimes. Minkowski tests include aligned and oblique planar shocks, cylindrical explosions, magnetic rotors, Alfvén waves and advected loops, as well as a set of tests designed to study the response of the divergence cleaning scheme to numerically generated monopoles. We study the code’s performance in curved spacetimes with spherical accretion onto a black hole on a fixed background spacetime and in fully dynamical spacetimes by evolutions of a magnetized polytropic neutron star and of the collapse of a magnetized stellar core. Our results agree well with exact solutions where these are available and we demonstrate convergence. All code and input files used to generate the results are available on http://einsteintoolkit.org. This makes our work fully reproducible and provides new users with an introduction to applications of the code. (paper)

  13. Sensitivity analysis and benchmarking of the BLT low-level waste source term code

    International Nuclear Information System (INIS)

    Suen, C.J.; Sullivan, T.M.

    1993-07-01

    To evaluate the source term for low-level waste disposal, a comprehensive model had been developed and incorporated into a computer code, called BLT (Breach-Leach-Transport) Since the release of the original version, many new features and improvements had also been added to the Leach model of the code. This report consists of two different studies based on the new version of the BLT code: (1) a series of verification/sensitivity tests; and (2) benchmarking of the BLT code using field data. Based on the results of the verification/sensitivity tests, the authors concluded that the new version represents a significant improvement and it is capable of providing more realistic simulations of the leaching process. Benchmarking work was carried out to provide a reasonable level of confidence in the model predictions. In this study, the experimentally measured release curves for nitrate, technetium-99 and tritium from the saltstone lysimeters operated by Savannah River Laboratory were used. The model results are observed to be in general agreement with the experimental data, within the acceptable limits of uncertainty

  14. ChemoPy: freely available python package for computational biology and chemoinformatics.

    Science.gov (United States)

    Cao, Dong-Sheng; Xu, Qing-Song; Hu, Qian-Nan; Liang, Yi-Zeng

    2013-04-15

    Molecular representation for small molecules has been routinely used in QSAR/SAR, virtual screening, database search, ranking, drug ADME/T prediction and other drug discovery processes. To facilitate extensive studies of drug molecules, we developed a freely available, open-source python package called chemoinformatics in python (ChemoPy) for calculating the commonly used structural and physicochemical features. It computes 16 drug feature groups composed of 19 descriptors that include 1135 descriptor values. In addition, it provides seven types of molecular fingerprint systems for drug molecules, including topological fingerprints, electro-topological state (E-state) fingerprints, MACCS keys, FP4 keys, atom pairs fingerprints, topological torsion fingerprints and Morgan/circular fingerprints. By applying a semi-empirical quantum chemistry program MOPAC, ChemoPy can also compute a large number of 3D molecular descriptors conveniently. The python package, ChemoPy, is freely available via http://code.google.com/p/pychem/downloads/list, and it runs on Linux and MS-Windows. Supplementary data are available at Bioinformatics online.

  15. Design and validation of Segment - freely available software for cardiovascular image analysis

    International Nuclear Information System (INIS)

    Heiberg, Einar; Sjögren, Jane; Ugander, Martin; Carlsson, Marcus; Engblom, Henrik; Arheden, Håkan

    2010-01-01

    Commercially available software for cardiovascular image analysis often has limited functionality and frequently lacks the careful validation that is required for clinical studies. We have already implemented a cardiovascular image analysis software package and released it as freeware for the research community. However, it was distributed as a stand-alone application and other researchers could not extend it by writing their own custom image analysis algorithms. We believe that the work required to make a clinically applicable prototype can be reduced by making the software extensible, so that researchers can develop their own modules or improvements. Such an initiative might then serve as a bridge between image analysis research and cardiovascular research. The aim of this article is therefore to present the design and validation of a cardiovascular image analysis software package (Segment) and to announce its release in a source code format. Segment can be used for image analysis in magnetic resonance imaging (MRI), computed tomography (CT), single photon emission computed tomography (SPECT) and positron emission tomography (PET). Some of its main features include loading of DICOM images from all major scanner vendors, simultaneous display of multiple image stacks and plane intersections, automated segmentation of the left ventricle, quantification of MRI flow, tools for manual and general object segmentation, quantitative regional wall motion analysis, myocardial viability analysis and image fusion tools. Here we present an overview of the validation results and validation procedures for the functionality of the software. We describe a technique to ensure continued accuracy and validity of the software by implementing and using a test script that tests the functionality of the software and validates the output. The software has been made freely available for research purposes in a source code format on the project home page (http://segment.heiberg.se). Segment

  16. Optimal power allocation and joint source-channel coding for wireless DS-CDMA visual sensor networks

    Science.gov (United States)

    Pandremmenou, Katerina; Kondi, Lisimachos P.; Parsopoulos, Konstantinos E.

    2011-01-01

    In this paper, we propose a scheme for the optimal allocation of power, source coding rate, and channel coding rate for each of the nodes of a wireless Direct Sequence Code Division Multiple Access (DS-CDMA) visual sensor network. The optimization is quality-driven, i.e. the received quality of the video that is transmitted by the nodes is optimized. The scheme takes into account the fact that the sensor nodes may be imaging scenes with varying levels of motion. Nodes that image low-motion scenes will require a lower source coding rate, so they will be able to allocate a greater portion of the total available bit rate to channel coding. Stronger channel coding will mean that such nodes will be able to transmit at lower power. This will both increase battery life and reduce interference to other nodes. Two optimization criteria are considered. One that minimizes the average video distortion of the nodes and one that minimizes the maximum distortion among the nodes. The transmission powers are allowed to take continuous values, whereas the source and channel coding rates can assume only discrete values. Thus, the resulting optimization problem lies in the field of mixed-integer optimization tasks and is solved using Particle Swarm Optimization. Our experimental results show the importance of considering the characteristics of the video sequences when determining the transmission power, source coding rate and channel coding rate for the nodes of the visual sensor network.

  17. Chronos sickness: digital reality in Duncan Jones’s Source Code

    Directory of Open Access Journals (Sweden)

    Marcia Tiemy Morita Kawamoto

    2017-01-01

    Full Text Available http://dx.doi.org/10.5007/2175-8026.2017v70n1p249 The advent of the digital technologies unquestionably affected the cinema. The indexical relation and realistic effect with the photographed world much praised by André Bazin and Roland Barthes is just one of the affected aspects. This article discusses cinema in light of the new digital possibilities, reflecting on Steven Shaviro’s consideration of “how a nonindexical realism might be possible” (63 and how in fact a new kind of reality, a digital one, might emerge in the science fiction film Source Code (2013 by Duncan Jones.

  18. Domain-Specific Acceleration and Auto-Parallelization of Legacy Scientific Code in FORTRAN 77 using Source-to-Source Compilation

    OpenAIRE

    Vanderbauwhede, Wim; Davidson, Gavin

    2017-01-01

    Massively parallel accelerators such as GPGPUs, manycores and FPGAs represent a powerful and affordable tool for scientists who look to speed up simulations of complex systems. However, porting code to such devices requires a detailed understanding of heterogeneous programming tools and effective strategies for parallelization. In this paper we present a source to source compilation approach with whole-program analysis to automatically transform single-threaded FORTRAN 77 legacy code into Ope...

  19. The European source-term evaluation code ASTEC: status and applications, including CANDU plant applications

    International Nuclear Information System (INIS)

    Van Dorsselaere, J.P.; Giordano, P.; Kissane, M.P.; Montanelli, T.; Schwinges, B.; Ganju, S.; Dickson, L.

    2004-01-01

    Research on light-water reactor severe accidents (SA) is still required in a limited number of areas in order to confirm accident-management plans. Thus, 49 European organizations have linked their SA research in a durable way through SARNET (Severe Accident Research and management NETwork), part of the European 6th Framework Programme. One goal of SARNET is to consolidate the integral code ASTEC (Accident Source Term Evaluation Code, developed by IRSN and GRS) as the European reference tool for safety studies; SARNET efforts include extending the application scope to reactor types other than PWR (including VVER) such as BWR and CANDU. ASTEC is used in IRSN's Probabilistic Safety Analysis level 2 of 900 MWe French PWRs. An earlier version of ASTEC's SOPHAEROS module, including improvements by AECL, is being validated as the Canadian Industry Standard Toolset code for FP-transport analysis in the CANDU Heat Transport System. Work with ASTEC has also been performed by Bhabha Atomic Research Centre, Mumbai, on IPHWR containment thermal hydraulics. (author)

  20. New Source Term Model for the RESRAD-OFFSITE Code Version 3

    Energy Technology Data Exchange (ETDEWEB)

    Yu, Charley [Argonne National Lab. (ANL), Argonne, IL (United States); Gnanapragasam, Emmanuel [Argonne National Lab. (ANL), Argonne, IL (United States); Cheng, Jing-Jy [Argonne National Lab. (ANL), Argonne, IL (United States); Kamboj, Sunita [Argonne National Lab. (ANL), Argonne, IL (United States); Chen, Shih-Yew [Argonne National Lab. (ANL), Argonne, IL (United States)

    2013-06-01

    This report documents the new source term model developed and implemented in Version 3 of the RESRAD-OFFSITE code. This new source term model includes: (1) "first order release with transport" option, in which the release of the radionuclide is proportional to the inventory in the primary contamination and the user-specified leach rate is the proportionality constant, (2) "equilibrium desorption release" option, in which the user specifies the distribution coefficient which quantifies the partitioning of the radionuclide between the solid and aqueous phases, and (3) "uniform release" option, in which the radionuclides are released from a constant fraction of the initially contaminated material during each time interval and the user specifies the duration over which the radionuclides are released.

  1. A statistical–mechanical view on source coding: physical compression and data compression

    International Nuclear Information System (INIS)

    Merhav, Neri

    2011-01-01

    We draw a certain analogy between the classical information-theoretic problem of lossy data compression (source coding) of memoryless information sources and the statistical–mechanical behavior of a certain model of a chain of connected particles (e.g. a polymer) that is subjected to a contracting force. The free energy difference pertaining to such a contraction turns out to be proportional to the rate-distortion function in the analogous data compression model, and the contracting force is proportional to the derivative of this function. Beyond the fact that this analogy may be interesting in its own right, it may provide a physical perspective on the behavior of optimum schemes for lossy data compression (and perhaps also an information-theoretic perspective on certain physical system models). Moreover, it triggers the derivation of lossy compression performance for systems with memory, using analysis tools and insights from statistical mechanics

  2. Coded aperture detector for high precision gamma-ray burst source locations

    International Nuclear Information System (INIS)

    Helmken, H.; Gorenstein, P.

    1977-01-01

    Coded aperture collimators in conjunction with position-sensitive detectors are very useful in the study of transient phenomenon because they combine broad field of view, high sensitivity, and an ability for precise source locations. Since the preceeding conference, a series of computer simulations of various detector designs have been carried out with the aid of a CDC 6400. Particular emphasis was placed on the development of a unit consisting of a one-dimensional random or periodic collimator in conjunction with a two-dimensional position-sensitive Xenon proportional counter. A configuration involving four of these units has been incorporated into the preliminary design study of the Transient Explorer (ATREX) satellite and are applicable to any SAS or HEAO type satellite mission. Results of this study, including detector response, fields of view, and source location precision, will be presented

  3. PRIMUS: a computer code for the preparation of radionuclide ingrowth matrices from user-specified sources

    International Nuclear Information System (INIS)

    Hermann, O.W.; Baes, C.F. III; Miller, C.W.; Begovich, C.L.; Sjoreen, A.L.

    1984-10-01

    The computer program, PRIMUS, reads a library of radionuclide branching fractions and half-lives and constructs a decay-chain data library and a problem-specific decay-chain data file. PRIMUS reads the decay data compiled for 496 nuclides from the Evaluated Nuclear Structure Data File (ENSDF). The ease of adding radionuclides to the input library allows the CRRIS system to further expand its comprehensive data base. The decay-chain library produced is input to the ANEMOS code. Also, PRIMUS produces a data set reduced to only the decay chains required in a particular problem, for input to the SUMIT, TERRA, MLSOIL, and ANDROS codes. Air concentrations and deposition rates from the PRIMUS decay-chain data file. Source term data may be entered directly to PRIMUS to be read by MLSOIL, TERRA, and ANDROS. The decay-chain data prepared by PRIMUS is needed for a matrix-operator method that computes either time-dependent decay products from an initial concentration generated from a constant input source. This document describes the input requirements and the output obtained. Also, sections are included on methods, applications, subroutines, and sample cases. A short appendix indicates a method of utilizing PRIMUS and the associated decay subroutines from TERRA or ANDROS for applications to other decay problems. 18 references

  4. RMG An Open Source Electronic Structure Code for Multi-Petaflops Calculations

    Science.gov (United States)

    Briggs, Emil; Lu, Wenchang; Hodak, Miroslav; Bernholc, Jerzy

    RMG (Real-space Multigrid) is an open source, density functional theory code for quantum simulations of materials. It solves the Kohn-Sham equations on real-space grids, which allows for natural parallelization via domain decomposition. Either subspace or Davidson diagonalization, coupled with multigrid methods, are used to accelerate convergence. RMG is a cross platform open source package which has been used in the study of a wide range of systems, including semiconductors, biomolecules, and nanoscale electronic devices. It can optionally use GPU accelerators to improve performance on systems where they are available. The recently released versions (>2.0) support multiple GPU's per compute node, have improved performance and scalability, enhanced accuracy and support for additional hardware platforms. New versions of the code are regularly released at http://www.rmgdft.org. The releases include binaries for Linux, Windows and MacIntosh systems, automated builds for clusters using cmake, as well as versions adapted to the major supercomputing installations and platforms. Several recent, large-scale applications of RMG will be discussed.

  5. Fast space-varying convolution using matrix source coding with applications to camera stray light reduction.

    Science.gov (United States)

    Wei, Jianing; Bouman, Charles A; Allebach, Jan P

    2014-05-01

    Many imaging applications require the implementation of space-varying convolution for accurate restoration and reconstruction of images. Here, we use the term space-varying convolution to refer to linear operators whose impulse response has slow spatial variation. In addition, these space-varying convolution operators are often dense, so direct implementation of the convolution operator is typically computationally impractical. One such example is the problem of stray light reduction in digital cameras, which requires the implementation of a dense space-varying deconvolution operator. However, other inverse problems, such as iterative tomographic reconstruction, can also depend on the implementation of dense space-varying convolution. While space-invariant convolution can be efficiently implemented with the fast Fourier transform, this approach does not work for space-varying operators. So direct convolution is often the only option for implementing space-varying convolution. In this paper, we develop a general approach to the efficient implementation of space-varying convolution, and demonstrate its use in the application of stray light reduction. Our approach, which we call matrix source coding, is based on lossy source coding of the dense space-varying convolution matrix. Importantly, by coding the transformation matrix, we not only reduce the memory required to store it; we also dramatically reduce the computation required to implement matrix-vector products. Our algorithm is able to reduce computation by approximately factoring the dense space-varying convolution operator into a product of sparse transforms. Experimental results show that our method can dramatically reduce the computation required for stray light reduction while maintaining high accuracy.

  6. Code of practice for the control and safe handling of radioactive sources used for therapeutic purposes (1988)

    International Nuclear Information System (INIS)

    1988-01-01

    This Code is intended as a guide to safe practices in the use of sealed and unsealed radioactive sources and in the management of patients being treated with them. It covers the procedures for the handling, preparation and use of radioactive sources, precautions to be taken for patients undergoing treatment, storage and transport of radioactive sources within a hospital or clinic, and routine testing of sealed sources [fr

  7. Gravitational waves from freely precessing neutron stars

    International Nuclear Information System (INIS)

    Jones, D.I.

    2001-01-01

    The purpose of this study is to assess the likely detectability of gravitational waves from freely precessing neutron stars. We begin by presenting a neutron star model of sufficient complexity to take into account both the elasticity and fluidity of a realistic neutron star. We then examine the effect of internal dissipation (i.e. heat generation within the star) and gravitational radiation reaction on the wobble. This is followed by an examination of various astrophysical scenarios where some mechanism might pump the precessional motion. We estimate the gravitational wave amplitude in these situations. Finally, we conclude that gravitational radiation from freely precessing neutron stars is almost certainly limited to a level undetectable by a LIGO II detector by internal dissipation. (author)

  8. A Source Term Calculation for the APR1400 NSSS Auxiliary System Components Using the Modified SHIELD Code

    International Nuclear Information System (INIS)

    Park, Hong Sik; Kim, Min; Park, Seong Chan; Seo, Jong Tae; Kim, Eun Kee

    2005-01-01

    The SHIELD code has been used to calculate the source terms of NSSS Auxiliary System (comprising CVCS, SIS, and SCS) components of the OPR1000. Because the code had been developed based upon the SYSTEM80 design and the APR1400 NSSS Auxiliary System design is considerably changed from that of SYSTEM80 or OPR1000, the SHIELD code cannot be used directly for APR1400 radiation design. Thus the hand-calculation is needed for the portion of design changes using the results of the SHIELD code calculation. In this study, the SHIELD code is modified to incorporate the APR1400 design changes and the source term calculation is performed for the APR1400 NSSS Auxiliary System components

  9. Detecting Source Code Plagiarism on .NET Programming Languages using Low-level Representation and Adaptive Local Alignment

    Directory of Open Access Journals (Sweden)

    Oscar Karnalim

    2017-01-01

    Full Text Available Even though there are various source code plagiarism detection approaches, only a few works which are focused on low-level representation for deducting similarity. Most of them are only focused on lexical token sequence extracted from source code. In our point of view, low-level representation is more beneficial than lexical token since its form is more compact than the source code itself. It only considers semantic-preserving instructions and ignores many source code delimiter tokens. This paper proposes a source code plagiarism detection which rely on low-level representation. For a case study, we focus our work on .NET programming languages with Common Intermediate Language as its low-level representation. In addition, we also incorporate Adaptive Local Alignment for detecting similarity. According to Lim et al, this algorithm outperforms code similarity state-of-the-art algorithm (i.e. Greedy String Tiling in term of effectiveness. According to our evaluation which involves various plagiarism attacks, our approach is more effective and efficient when compared with standard lexical-token approach.

  10. Living Up to the Code's Exhortations? Social Workers' Political Knowledge Sources, Expectations, and Behaviors.

    Science.gov (United States)

    Felderhoff, Brandi Jean; Hoefer, Richard; Watson, Larry Dan

    2016-01-01

    The National Association of Social Workers' (NASW's) Code of Ethics urges social workers to engage in political action. However, little recent research has been conducted to examine whether social workers support this admonition and the extent to which they actually engage in politics. The authors gathered data from a survey of social workers in Austin, Texas, to address three questions. First, because keeping informed about government and political news is an important basis for action, the authors asked what sources of knowledge social workers use. Second, they asked what the respondents believe are appropriate political behaviors for other social workers and NASW. Third, they asked for self-reports regarding respondents' own political behaviors. Results indicate that social workers use the Internet and traditional media services to stay informed; expect other social workers and NASW to be active; and are, overall, more active than the general public in many types of political activities. The comparisons made between expectations for others and their own behaviors are interesting in their complex outcomes. Social workers should strive for higher levels of adherence to the code's urgings on political activity. Implications for future work are discussed.

  11. RIES - Rijnland Internet Election System: A Cursory Study of Published Source Code

    Science.gov (United States)

    Gonggrijp, Rop; Hengeveld, Willem-Jan; Hotting, Eelco; Schmidt, Sebastian; Weidemann, Frederik

    The Rijnland Internet Election System (RIES) is a system designed for voting in public elections over the internet. A rather cursory scan of the source code to RIES showed a significant lack of security-awareness among the programmers which - among other things - appears to have left RIES vulnerable to near-trivial attacks. If it had not been for independent studies finding problems, RIES would have been used in the 2008 Water Board elections, possibly handling a million votes or more. While RIES was more extensively studied to find cryptographic shortcomings, our work shows that more down-to-earth secure design practices can be at least as important, and the aspects need to be examined much sooner than right before an election.

  12. Low-Complexity Compression Algorithm for Hyperspectral Images Based on Distributed Source Coding

    Directory of Open Access Journals (Sweden)

    Yongjian Nian

    2013-01-01

    Full Text Available A low-complexity compression algorithm for hyperspectral images based on distributed source coding (DSC is proposed in this paper. The proposed distributed compression algorithm can realize both lossless and lossy compression, which is implemented by performing scalar quantization strategy on the original hyperspectral images followed by distributed lossless compression. Multilinear regression model is introduced for distributed lossless compression in order to improve the quality of side information. Optimal quantized step is determined according to the restriction of the correct DSC decoding, which makes the proposed algorithm achieve near lossless compression. Moreover, an effective rate distortion algorithm is introduced for the proposed algorithm to achieve low bit rate. Experimental results show that the compression performance of the proposed algorithm is competitive with that of the state-of-the-art compression algorithms for hyperspectral images.

  13. CodeRAnts: A recommendation method based on collaborative searching and ant colonies, applied to reusing of open source code

    Directory of Open Access Journals (Sweden)

    Isaac Caicedo-Castro

    2014-01-01

    Full Text Available This paper presents CodeRAnts, a new recommendation method based on a collaborative searching technique and inspired on the ant colony metaphor. This method aims to fill the gap in the current state of the matter regarding recommender systems for software reuse, for which prior works present two problems. The first is that, recommender systems based on these works cannot learn from the collaboration of programmers and second, outcomes of assessments carried out on these systems present low precision measures and recall and in some of these systems, these metrics have not been evaluated. The work presented in this paper contributes a recommendation method, which solves these problems.

  14. Neutrons Flux Distributions of the Pu-Be Source and its Simulation by the MCNP-4B Code

    Science.gov (United States)

    Faghihi, F.; Mehdizadeh, S.; Hadad, K.

    Neutron Fluence rate of a low intense Pu-Be source is measured by Neutron Activation Analysis (NAA) of 197Au foils. Also, the neutron fluence rate distribution versus energy is calculated using the MCNP-4B code based on ENDF/B-V library. Theoretical simulation as well as our experimental performance are a new experience for Iranians to make reliability with the code for further researches. In our theoretical investigation, an isotropic Pu-Be source with cylindrical volume distribution is simulated and relative neutron fluence rate versus energy is calculated using MCNP-4B code. Variation of the fast and also thermal neutrons fluence rate, which are measured by NAA method and MCNP code, are compared.

  15. Calculation Of Fuel Burnup And Radionuclide Inventory In The Syrian Miniature Neutron Source Reactor Using The GETERA Code

    International Nuclear Information System (INIS)

    Khattab, K.; Dawahra, S.

    2011-01-01

    Calculations of the fuel burnup and radionuclide inventory in the Syrian Miniature Neutron Source Reactor (MNSR) after 10 years (the reactor core expected life) of the reactor operation time are presented in this paper using the GETERA code. The code is used to calculate the fuel group constants and the infinite multiplication factor versus the reactor operating time for 10, 20, and 30 kW operating power levels. The amounts of uranium burnup and plutonium produced in the reactor core, the concentrations and radionuclides of the most important fission product and actinide radionuclides accumulated in the reactor core, and the total radioactivity of the reactor core were calculated using the GETERA code as well. It is found that the GETERA code is better than the WIMSD4 code for the fuel burnup calculation in the MNSR reactor since it is newer and has a bigger library of isotopes and more accurate. (author)

  16. A proposed metamodel for the implementation of object oriented software through the automatic generation of source code

    Directory of Open Access Journals (Sweden)

    CARVALHO, J. S. C.

    2008-12-01

    Full Text Available During the development of software one of the most visible risks and perhaps the biggest implementation obstacle relates to the time management. All delivery deadlines software versions must be followed, but it is not always possible, sometimes due to delay in coding. This paper presents a metamodel for software implementation, which will rise to a development tool for automatic generation of source code, in order to make any development pattern transparent to the programmer, significantly reducing the time spent in coding artifacts that make up the software.

  17. Uncertainty analysis methods for quantification of source terms using a large computer code

    International Nuclear Information System (INIS)

    Han, Seok Jung

    1997-02-01

    Quantification of uncertainties in the source term estimations by a large computer code, such as MELCOR and MAAP, is an essential process of the current probabilistic safety assessments (PSAs). The main objectives of the present study are (1) to investigate the applicability of a combined procedure of the response surface method (RSM) based on input determined from a statistical design and the Latin hypercube sampling (LHS) technique for the uncertainty analysis of CsI release fractions under a hypothetical severe accident sequence of a station blackout at Young-Gwang nuclear power plant using MAAP3.0B code as a benchmark problem; and (2) to propose a new measure of uncertainty importance based on the distributional sensitivity analysis. On the basis of the results obtained in the present work, the RSM is recommended to be used as a principal tool for an overall uncertainty analysis in source term quantifications, while using the LHS in the calculations of standardized regression coefficients (SRC) and standardized rank regression coefficients (SRRC) to determine the subset of the most important input parameters in the final screening step and to check the cumulative distribution functions (cdfs) obtained by RSM. Verification of the response surface model for its sufficient accuracy is a prerequisite for the reliability of the final results obtained by the combined procedure proposed in the present work. In the present study a new measure has been developed to utilize the metric distance obtained from cumulative distribution functions (cdfs). The measure has been evaluated for three different cases of distributions in order to assess the characteristics of the measure: The first case and the second are when the distribution is known as analytical distributions and the other case is when the distribution is unknown. The first case is given by symmetry analytical distributions. The second case consists of two asymmetry distributions of which the skewness is non zero

  18. Comparison of TG‐43 dosimetric parameters of brachytherapy sources obtained by three different versions of MCNP codes

    Science.gov (United States)

    Zaker, Neda; Sina, Sedigheh; Koontz, Craig; Meigooni1, Ali S.

    2016-01-01

    Monte Carlo simulations are widely used for calculation of the dosimetric parameters of brachytherapy sources. MCNP4C2, MCNP5, MCNPX, EGS4, EGSnrc, PTRAN, and GEANT4 are among the most commonly used codes in this field. Each of these codes utilizes a cross‐sectional library for the purpose of simulating different elements and materials with complex chemical compositions. The accuracies of the final outcomes of these simulations are very sensitive to the accuracies of the cross‐sectional libraries. Several investigators have shown that inaccuracies of some of the cross section files have led to errors in  125I and  103Pd parameters. The purpose of this study is to compare the dosimetric parameters of sample brachytherapy sources, calculated with three different versions of the MCNP code — MCNP4C, MCNP5, and MCNPX. In these simulations for each source type, the source and phantom geometries, as well as the number of the photons, were kept identical, thus eliminating the possible uncertainties. The results of these investigations indicate that for low‐energy sources such as  125I and  103Pd there are discrepancies in gL(r) values. Discrepancies up to 21.7% and 28% are observed between MCNP4C and other codes at a distance of 6 cm for  103Pd and 10 cm for  125I from the source, respectively. However, for higher energy sources, the discrepancies in gL(r) values are less than 1.1% for  192Ir and less than 1.2% for  137Cs between the three codes. PACS number(s): 87.56.bg PMID:27074460

  19. Comparison of TG-43 dosimetric parameters of brachytherapy sources obtained by three different versions of MCNP codes.

    Science.gov (United States)

    Zaker, Neda; Zehtabian, Mehdi; Sina, Sedigheh; Koontz, Craig; Meigooni, Ali S

    2016-03-08

    Monte Carlo simulations are widely used for calculation of the dosimetric parameters of brachytherapy sources. MCNP4C2, MCNP5, MCNPX, EGS4, EGSnrc, PTRAN, and GEANT4 are among the most commonly used codes in this field. Each of these codes utilizes a cross-sectional library for the purpose of simulating different elements and materials with complex chemical compositions. The accuracies of the final outcomes of these simulations are very sensitive to the accuracies of the cross-sectional libraries. Several investigators have shown that inaccuracies of some of the cross section files have led to errors in 125I and 103Pd parameters. The purpose of this study is to compare the dosimetric parameters of sample brachytherapy sources, calculated with three different versions of the MCNP code - MCNP4C, MCNP5, and MCNPX. In these simulations for each source type, the source and phantom geometries, as well as the number of the photons, were kept identical, thus eliminating the possible uncertainties. The results of these investigations indicate that for low-energy sources such as 125I and 103Pd there are discrepancies in gL(r) values. Discrepancies up to 21.7% and 28% are observed between MCNP4C and other codes at a distance of 6 cm for 103Pd and 10 cm for 125I from the source, respectively. However, for higher energy sources, the discrepancies in gL(r) values are less than 1.1% for 192Ir and less than 1.2% for 137Cs between the three codes.

  20. Schlieren photography on freely flying hawkmoth.

    Science.gov (United States)

    Liu, Yun; Roll, Jesse; Van Kooten, Stephen; Deng, Xinyan

    2018-05-01

    The aerodynamic force on flying insects results from the vortical flow structures that vary both spatially and temporally throughout flight. Due to these complexities and the inherent difficulties in studying flying insects in a natural setting, a complete picture of the vortical flow has been difficult to obtain experimentally. In this paper, Schlieren , a widely used technique for highspeed flow visualization, was adapted to capture the vortex structures around freely flying hawkmoth ( Manduca ). Flow features such as leading-edge vortex, trailing-edge vortex, as well as the full vortex system in the wake were visualized directly. Quantification of the flow from the Schlieren images was then obtained by applying a physics-based optical flow method, extending the potential applications of the method to further studies of flying insects. © 2018 The Author(s).

  1. Prey capture by freely swimming flagellates

    Science.gov (United States)

    Andersen, Anders; Dolger, Julia; Nielsen, Lasse Tor; Kiorboe, Thomas

    2017-11-01

    Flagellates are unicellular microswimmers that propel themselves using one or several beating flagella. Here, we explore the dependence of swimming kinematics and prey clearance rate on flagellar arrangement and determine optimal flagellar arrangements and essential trade-offs. To describe near-cell flows around freely swimming flagellates we consider a model in which the cell is represented by a no-slip sphere and each flagellum by a point force. For uniflagellates pulled by a single flagellum the model suggests that a long flagellum favors fast swimming, whereas high clearance rate is favored by a very short flagellum. For biflagellates with both a longitudinal and a transversal flagellum we explore the helical swimming kinematics and the prey capture sites. We compare our predictions with observations of swimming kinematics, prey capture, and flows around common marine flagellates. The Centre for Ocean Life is a VKR Centre of Excellence supported by the Villum Foundation.

  2. Virtual reality for freely moving animals.

    Science.gov (United States)

    Stowers, John R; Hofbauer, Maximilian; Bastien, Renaud; Griessner, Johannes; Higgins, Peter; Farooqui, Sarfarazhussain; Fischer, Ruth M; Nowikovsky, Karin; Haubensak, Wulf; Couzin, Iain D; Tessmar-Raible, Kristin; Straw, Andrew D

    2017-10-01

    Standard animal behavior paradigms incompletely mimic nature and thus limit our understanding of behavior and brain function. Virtual reality (VR) can help, but it poses challenges. Typical VR systems require movement restrictions but disrupt sensorimotor experience, causing neuronal and behavioral alterations. We report the development of FreemoVR, a VR system for freely moving animals. We validate immersive VR for mice, flies, and zebrafish. FreemoVR allows instant, disruption-free environmental reconfigurations and interactions between real organisms and computer-controlled agents. Using the FreemoVR platform, we established a height-aversion assay in mice and studied visuomotor effects in Drosophila and zebrafish. Furthermore, by photorealistically mimicking zebrafish we discovered that effective social influence depends on a prospective leader balancing its internally preferred directional choice with social interaction. FreemoVR technology facilitates detailed investigations into neural function and behavior through the precise manipulation of sensorimotor feedback loops in unrestrained animals.

  3. Source coherence impairments in a direct detection direct sequence optical code-division multiple-access system.

    Science.gov (United States)

    Fsaifes, Ihsan; Lepers, Catherine; Lourdiane, Mounia; Gallion, Philippe; Beugin, Vincent; Guignard, Philippe

    2007-02-01

    We demonstrate that direct sequence optical code- division multiple-access (DS-OCDMA) encoders and decoders using sampled fiber Bragg gratings (S-FBGs) behave as multipath interferometers. In that case, chip pulses of the prime sequence codes generated by spreading in time-coherent data pulses can result from multiple reflections in the interferometers that can superimpose within a chip time duration. We show that the autocorrelation function has to be considered as the sum of complex amplitudes of the combined chip as the laser source coherence time is much greater than the integration time of the photodetector. To reduce the sensitivity of the DS-OCDMA system to the coherence time of the laser source, we analyze the use of sparse and nonperiodic quadratic congruence and extended quadratic congruence codes.

  4. Source coherence impairments in a direct detection direct sequence optical code-division multiple-access system

    Science.gov (United States)

    Fsaifes, Ihsan; Lepers, Catherine; Lourdiane, Mounia; Gallion, Philippe; Beugin, Vincent; Guignard, Philippe

    2007-02-01

    We demonstrate that direct sequence optical code- division multiple-access (DS-OCDMA) encoders and decoders using sampled fiber Bragg gratings (S-FBGs) behave as multipath interferometers. In that case, chip pulses of the prime sequence codes generated by spreading in time-coherent data pulses can result from multiple reflections in the interferometers that can superimpose within a chip time duration. We show that the autocorrelation function has to be considered as the sum of complex amplitudes of the combined chip as the laser source coherence time is much greater than the integration time of the photodetector. To reduce the sensitivity of the DS-OCDMA system to the coherence time of the laser source, we analyze the use of sparse and nonperiodic quadratic congruence and extended quadratic congruence codes.

  5. Gaze strategies can reveal the impact of source code features on the cognitive load of novice programmers

    DEFF Research Database (Denmark)

    Wulff-Jensen, Andreas; Ruder, Kevin Vignola; Triantafyllou, Evangelia

    2018-01-01

    As shown by several studies, programmers’ readability of source code is influenced by its structural and the textual features. In order to assess the importance of these features, we conducted an eye-tracking experiment with programming students. To assess the readability and comprehensibility of...

  6. Use of WIMS-E lattice code for prediction of the transuranic source term for spent fuel dose estimation

    International Nuclear Information System (INIS)

    Schwinkendorf, K.N.

    1996-01-01

    A recent source term analysis has shown a discrepancy between ORIGEN2 transuranic isotopic production estimates and those produced with the WIMS-E lattice physics code. Excellent agreement between relevant experimental measurements and WIMS-E was shown, thus exposing an error in the cross section library used by ORIGEN2

  7. A Novel Code System for Revealing Sources of Students' Difficulties with Stoichiometry

    Science.gov (United States)

    Gulacar, Ozcan; Overton, Tina L.; Bowman, Charles R.; Fynewever, Herb

    2013-01-01

    A coding scheme is presented and used to evaluate solutions of seventeen students working on twenty five stoichiometry problems in a think-aloud protocol. The stoichiometry problems are evaluated as a series of sub-problems (e.g., empirical formulas, mass percent, or balancing chemical equations), and the coding scheme was used to categorize each…

  8. VULCAN: An Open-source, Validated Chemical Kinetics Python Code for Exoplanetary Atmospheres

    Energy Technology Data Exchange (ETDEWEB)

    Tsai, Shang-Min; Grosheintz, Luc; Kitzmann, Daniel; Heng, Kevin [University of Bern, Center for Space and Habitability, Sidlerstrasse 5, CH-3012, Bern (Switzerland); Lyons, James R. [Arizona State University, School of Earth and Space Exploration, Bateman Physical Sciences, Tempe, AZ 85287-1404 (United States); Rimmer, Paul B., E-mail: shang-min.tsai@space.unibe.ch, E-mail: kevin.heng@csh.unibe.ch, E-mail: jimlyons@asu.edu [University of St. Andrews, School of Physics and Astronomy, St. Andrews, KY16 9SS (United Kingdom)

    2017-02-01

    We present an open-source and validated chemical kinetics code for studying hot exoplanetary atmospheres, which we name VULCAN. It is constructed for gaseous chemistry from 500 to 2500 K, using a reduced C–H–O chemical network with about 300 reactions. It uses eddy diffusion to mimic atmospheric dynamics and excludes photochemistry. We have provided a full description of the rate coefficients and thermodynamic data used. We validate VULCAN by reproducing chemical equilibrium and by comparing its output versus the disequilibrium-chemistry calculations of Moses et al. and Rimmer and Helling. It reproduces the models of HD 189733b and HD 209458b by Moses et al., which employ a network with nearly 1600 reactions. We also use VULCAN to examine the theoretical trends produced when the temperature–pressure profile and carbon-to-oxygen ratio are varied. Assisted by a sensitivity test designed to identify the key reactions responsible for producing a specific molecule, we revisit the quenching approximation and find that it is accurate for methane but breaks down for acetylene, because the disequilibrium abundance of acetylene is not directly determined by transport-induced quenching, but is rather indirectly controlled by the disequilibrium abundance of methane. Therefore we suggest that the quenching approximation should be used with caution and must always be checked against a chemical kinetics calculation. A one-dimensional model atmosphere with 100 layers, computed using VULCAN, typically takes several minutes to complete. VULCAN is part of the Exoclimes Simulation Platform (ESP; exoclime.net) and publicly available at https://github.com/exoclime/VULCAN.

  9. Code of Conduct on the Safety and Security of Radioactive Sources and the Supplementary Guidance on the Import and Export of Radioactive Sources

    International Nuclear Information System (INIS)

    2005-01-01

    In operative paragraph 4 of its resolution GC(47)/RES/7.B, the General Conference, having welcomed the approval by the Board of Governors of the revised IAEA Code of Conduct on the Safety and Security of Radioactive Sources (GC(47)/9), and while recognizing that the Code is not a legally binding instrument, urged each State to write to the Director General that it fully supports and endorses the IAEA's efforts to enhance the safety and security of radioactive sources and is working toward following the guidance contained in the IAEA Code of Conduct. In operative paragraph 5, the Director General was requested to compile, maintain and publish a list of States that have made such a political commitment. The General Conference, in operative paragraph 6, recognized that this procedure 'is an exceptional one, having no legal force and only intended for information, and therefore does not constitute a precedent applicable to other Codes of Conduct of the Agency or of other bodies belonging to the United Nations system'. In operative paragraph 7 of resolution GC(48)/RES/10.D, the General Conference welcomed the fact that more than 60 States had made political commitments with respect to the Code in line with resolution GC(47)/RES/7.B and encouraged other States to do so. In operative paragraph 8 of resolution GC(48)/RES/10.D, the General Conference further welcomed the approval by the Board of Governors of the Supplementary Guidance on the Import and Export of Radioactive Sources (GC(48)/13), endorsed this Guidance while recognizing that it is not legally binding, noted that more than 30 countries had made clear their intention to work towards effective import and export controls by 31 December 2005, and encouraged States to act in accordance with the Guidance on a harmonized basis and to notify the Director General of their intention to do so as supplementary information to the Code of Conduct, recalling operative paragraph 6 of resolution GC(47)/RES/7.B. 4. The

  10. Practical open source software for libraries

    CERN Document Server

    Engard, Nicole

    2010-01-01

    Open source refers to an application whose source code is made available for use or modification as users see fit. This means libraries gain more flexibility and freedom than with software purchased with license restrictions. Both the open source community and the library world live by the same rules and principles. Practical Open Source Software for Libraries explains the facts and dispels myths about open source. Chapters introduce librarians to open source and what it means for libraries. The reader is provided with links to a toolbox full of freely available open source products to use in

  11. ANEMOS: A computer code to estimate air concentrations and ground deposition rates for atmospheric nuclides emitted from multiple operating sources

    International Nuclear Information System (INIS)

    Miller, C.W.; Sjoreen, A.L.; Begovich, C.L.; Hermann, O.W.

    1986-11-01

    This code estimates concentrations in air and ground deposition rates for Atmospheric Nuclides Emitted from Multiple Operating Sources. ANEMOS is one component of an integrated Computerized Radiological Risk Investigation System (CRRIS) developed for the US Environmental Protection Agency (EPA) for use in performing radiological assessments and in developing radiation standards. The concentrations and deposition rates calculated by ANEMOS are used in subsequent portions of the CRRIS for estimating doses and risks to man. The calculations made in ANEMOS are based on the use of a straight-line Gaussian plume atmospheric dispersion model with both dry and wet deposition parameter options. The code will accommodate a ground-level or elevated point and area source or windblown source. Adjustments may be made during the calculations for surface roughness, building wake effects, terrain height, wind speed at the height of release, the variation in plume rise as a function of downwind distance, and the in-growth and decay of daughter products in the plume as it travels downwind. ANEMOS can also accommodate multiple particle sizes and clearance classes, and it may be used to calculate the dose from a finite plume of gamma-ray-emitting radionuclides passing overhead. The output of this code is presented for 16 sectors of a circular grid. ANEMOS can calculate both the sector-average concentrations and deposition rates at a given set of downwind distances in each sector and the average of these quantities over an area within each sector bounded by two successive downwind distances. ANEMOS is designed to be used primarily for continuous, long-term radionuclide releases. This report describes the models used in the code, their computer implementation, the uncertainty associated with their use, and the use of ANEMOS in conjunction with other codes in the CRRIS. A listing of the code is included in Appendix C

  12. ANEMOS: A computer code to estimate air concentrations and ground deposition rates for atmospheric nuclides emitted from multiple operating sources

    Energy Technology Data Exchange (ETDEWEB)

    Miller, C.W.; Sjoreen, A.L.; Begovich, C.L.; Hermann, O.W.

    1986-11-01

    This code estimates concentrations in air and ground deposition rates for Atmospheric Nuclides Emitted from Multiple Operating Sources. ANEMOS is one component of an integrated Computerized Radiological Risk Investigation System (CRRIS) developed for the US Environmental Protection Agency (EPA) for use in performing radiological assessments and in developing radiation standards. The concentrations and deposition rates calculated by ANEMOS are used in subsequent portions of the CRRIS for estimating doses and risks to man. The calculations made in ANEMOS are based on the use of a straight-line Gaussian plume atmospheric dispersion model with both dry and wet deposition parameter options. The code will accommodate a ground-level or elevated point and area source or windblown source. Adjustments may be made during the calculations for surface roughness, building wake effects, terrain height, wind speed at the height of release, the variation in plume rise as a function of downwind distance, and the in-growth and decay of daughter products in the plume as it travels downwind. ANEMOS can also accommodate multiple particle sizes and clearance classes, and it may be used to calculate the dose from a finite plume of gamma-ray-emitting radionuclides passing overhead. The output of this code is presented for 16 sectors of a circular grid. ANEMOS can calculate both the sector-average concentrations and deposition rates at a given set of downwind distances in each sector and the average of these quantities over an area within each sector bounded by two successive downwind distances. ANEMOS is designed to be used primarily for continuous, long-term radionuclide releases. This report describes the models used in the code, their computer implementation, the uncertainty associated with their use, and the use of ANEMOS in conjunction with other codes in the CRRIS. A listing of the code is included in Appendix C.

  13. Analysis of source term aspects in the experiment Phebus FPT1 with the MELCOR and CFX codes

    Energy Technology Data Exchange (ETDEWEB)

    Martin-Fuertes, F. [Universidad Politecnica de Madrid, UPM, Nuclear Engineering Department, Jose Gutierrez Abascal 2, 28006 Madrid (Spain)]. E-mail: francisco.martinfuertes@upm.es; Barbero, R. [Universidad Politecnica de Madrid, UPM, Nuclear Engineering Department, Jose Gutierrez Abascal 2, 28006 Madrid (Spain); Martin-Valdepenas, J.M. [Universidad Politecnica de Madrid, UPM, Nuclear Engineering Department, Jose Gutierrez Abascal 2, 28006 Madrid (Spain); Jimenez, M.A. [Universidad Politecnica de Madrid, UPM, Nuclear Engineering Department, Jose Gutierrez Abascal 2, 28006 Madrid (Spain)

    2007-03-15

    Several aspects related to the source term in the Phebus FPT1 experiment have been analyzed with the help of MELCOR 1.8.5 and CFX 5.7 codes. Integral aspects covering circuit thermalhydraulics, fission product and structural material release, vapours and aerosol retention in the circuit and containment were studied with MELCOR, and the strong and weak points after comparison to experimental results are stated. Then, sensitivity calculations dealing with chemical speciation upon release, vertical line aerosol deposition and steam generator aerosol deposition were performed. Finally, detailed calculations concerning aerosol deposition in the steam generator tube are presented. They were obtained by means of an in-house code application, named COCOA, as well as with CFX computational fluid dynamics code, in which several models for aerosol deposition were implemented and tested, while the models themselves are discussed.

  14. Open-source tool for automatic import of coded surveying data to multiple vector layers in GIS environment

    Directory of Open Access Journals (Sweden)

    Eva Stopková

    2016-12-01

    Full Text Available This paper deals with a tool that enables import of the coded data in a singletext file to more than one vector layers (including attribute tables, together withautomatic drawing of line and polygon objects and with optional conversion toCAD. Python script v.in.survey is available as an add-on for open-source softwareGRASS GIS (GRASS Development Team. The paper describes a case study basedon surveying at the archaeological mission at Tell-el Retaba (Egypt. Advantagesof the tool (e.g. significant optimization of surveying work and its limits (demandson keeping conventions for the points’ names coding are discussed here as well.Possibilities of future development are suggested (e.g. generalization of points’names coding or more complex attribute table creation.

  15. BLT [Breach, Leach, and Transport]: A source term computer code for low-level waste shallow land burial

    International Nuclear Information System (INIS)

    Suen, C.J.; Sullivan, T.M.

    1990-01-01

    This paper discusses the development of a source term model for low-level waste shallow land burial facilities and separates the problem into four individual compartments. These are water flow, corrosion and subsequent breaching of containers, leaching of the waste forms, and solute transport. For the first and the last compartments, we adopted the existing codes, FEMWATER and FEMWASTE, respectively. We wrote two new modules for the other two compartments in the form of two separate Fortran subroutines -- BREACH and LEACH. They were incorporated into a modified version of the transport code FEMWASTE. The resultant code, which contains all three modules of container breaching, waste form leaching, and solute transport, was renamed BLT (for Breach, Leach, and Transport). This paper summarizes the overall program structure and logistics, and presents two examples from the results of verification and sensitivity tests. 6 refs., 7 figs., 1 tab

  16. SCRIC: a code dedicated to the detailed emission and absorption of heterogeneous NLTE plasmas; application to xenon EUV sources

    International Nuclear Information System (INIS)

    Gaufridy de Dortan, F. de

    2006-01-01

    Nearly all spectral opacity codes for LTE and NLTE plasmas rely on configurations approximate modelling or even supra-configurations modelling for mid Z plasmas. But in some cases, configurations interaction (either relativistic and non relativistic) induces dramatic changes in spectral shapes. We propose here a new detailed emissivity code with configuration mixing to allow for a realistic description of complex mid Z plasmas. A collisional radiative calculation. based on HULLAC precise energies and cross sections. determines the populations. Detailed emissivities and opacities are then calculated and radiative transfer equation is resolved for wide inhomogeneous plasmas. This code is able to cope rapidly with very large amount of atomic data. It is therefore possible to use complex hydrodynamic files even on personal computers in a very limited time. We used this code for comparison with Xenon EUV sources within the framework of nano-lithography developments. It appears that configurations mixing strongly shifts satellite lines and must be included in the description of these sources to enhance their efficiency. (author)

  17. Use of CITATION code for flux calculation in neutron activation analysis with voluminous sample using an Am-Be source

    International Nuclear Information System (INIS)

    Khelifi, R.; Idiri, Z.; Bode, P.

    2002-01-01

    The CITATION code based on neutron diffusion theory was used for flux calculations inside voluminous samples in prompt gamma activation analysis with an isotopic neutron source (Am-Be). The code uses specific parameters related to the energy spectrum source and irradiation system materials (shielding, reflector). The flux distribution (thermal and fast) was calculated in the three-dimensional geometry for the system: air, polyethylene and water cuboidal sample (50x50x50 cm). Thermal flux was calculated in a series of points inside the sample. The results agreed reasonably well with observed values. The maximum thermal flux was observed at a distance of 3.2 cm while CITATION gave 3.7 cm. Beyond a depth of 7.2 cm, the thermal flux to fast flux ratio increases up to twice and allows us to optimise the detection system position in the scope of in-situ PGAA

  18. Recycling source terms for edge plasma fluid models and impact on convergence behaviour of the BRAAMS 'B2' code

    International Nuclear Information System (INIS)

    Maddison, G.P.; Reiter, D.

    1994-02-01

    Predictive simulations of tokamak edge plasmas require the most authentic description of neutral particle recycling sources, not merely the most expedient numerically. Employing a prototypical ITER divertor arrangement under conditions of high recycling, trial calculations with the 'B2' steady-state edge plasma transport code, plus varying approximations or recycling, reveal marked sensitivity of both results and its convergence behaviour to details of sources incorporated. Comprehensive EIRENE Monte Carlo resolution of recycling is implemented by full and so-called 'shot' intermediate cycles between the plasma fluid and statistical neutral particle models. As generally for coupled differencing and stochastic procedures, though, overall convergence properties become more difficult to assess. A pragmatic criterion for the 'B2'/EIRENE code system is proposed to determine its success, proceeding from a stricter condition previously identified for one particular analytic approximation of recycling in 'B2'. Certain procedures are also inferred potentially to improve their convergence further. (orig.)

  19. 3D-e-Chem-VM: Structural Cheminformatics Research Infrastructure in a Freely Available Virtual Machine

    NARCIS (Netherlands)

    McGuire, R.; Verhoeven, S.; Vass, M.; Vriend, G.; Esch, I.J. de; Lusher, S.J.; Leurs, R.; Ridder, L.; Kooistra, A.J.; Ritschel, T.; Graaf, C. de

    2017-01-01

    3D-e-Chem-VM is an open source, freely available Virtual Machine ( http://3d-e-chem.github.io/3D-e-Chem-VM/ ) that integrates cheminformatics and bioinformatics tools for the analysis of protein-ligand interaction data. 3D-e-Chem-VM consists of software libraries, and database and workflow tools

  20. 3D-e-Chem-VM : Structural Cheminformatics Research Infrastructure in a Freely Available Virtual Machine

    NARCIS (Netherlands)

    McGuire, Ross; Verhoeven, Stefan; Vass, Márton; Vriend, Gerrit; De Esch, Iwan J P; Lusher, Scott J.; Leurs, Rob; Ridder, Lars; Kooistra, Albert J.; Ritschel, Tina; de Graaf, C.

    2017-01-01

    3D-e-Chem-VM is an open source, freely available Virtual Machine ( http://3d-e-chem.github.io/3D-e-Chem-VM/ ) that integrates cheminformatics and bioinformatics tools for the analysis of protein-ligand interaction data. 3D-e-Chem-VM consists of software libraries, and database and workflow tools

  1. EchoSeed Model 6733 Iodine-125 brachytherapy source: Improved dosimetric characterization using the MCNP5 Monte Carlo code

    Energy Technology Data Exchange (ETDEWEB)

    Mosleh-Shirazi, M. A.; Hadad, K.; Faghihi, R.; Baradaran-Ghahfarokhi, M.; Naghshnezhad, Z.; Meigooni, A. S. [Center for Research in Medical Physics and Biomedical Engineering and Physics Unit, Radiotherapy Department, Shiraz University of Medical Sciences, Shiraz 71936-13311 (Iran, Islamic Republic of); Radiation Research Center and Medical Radiation Department, School of Engineering, Shiraz University, Shiraz 71936-13311 (Iran, Islamic Republic of); Comprehensive Cancer Center of Nevada, Las Vegas, Nevada 89169 (United States)

    2012-08-15

    This study primarily aimed to obtain the dosimetric characteristics of the Model 6733 {sup 125}I seed (EchoSeed) with improved precision and accuracy using a more up-to-date Monte-Carlo code and data (MCNP5) compared to previously published results, including an uncertainty analysis. Its secondary aim was to compare the results obtained using the MCNP5, MCNP4c2, and PTRAN codes for simulation of this low-energy photon-emitting source. The EchoSeed geometry and chemical compositions together with a published {sup 125}I spectrum were used to perform dosimetric characterization of this source as per the updated AAPM TG-43 protocol. These simulations were performed in liquid water material in order to obtain the clinically applicable dosimetric parameters for this source model. Dose rate constants in liquid water, derived from MCNP4c2 and MCNP5 simulations, were found to be 0.993 cGyh{sup -1} U{sup -1} ({+-}1.73%) and 0.965 cGyh{sup -1} U{sup -1} ({+-}1.68%), respectively. Overall, the MCNP5 derived radial dose and 2D anisotropy functions results were generally closer to the measured data (within {+-}4%) than MCNP4c and the published data for PTRAN code (Version 7.43), while the opposite was seen for dose rate constant. The generally improved MCNP5 Monte Carlo simulation may be attributed to a more recent and accurate cross-section library. However, some of the data points in the results obtained from the above-mentioned Monte Carlo codes showed no statistically significant differences. Derived dosimetric characteristics in liquid water are provided for clinical applications of this source model.

  2. Methodology and Toolset for Model Verification, Hardware/Software co-simulation, Performance Optimisation and Customisable Source-code generation

    DEFF Research Database (Denmark)

    Berger, Michael Stübert; Soler, José; Yu, Hao

    2013-01-01

    The MODUS project aims to provide a pragmatic and viable solution that will allow SMEs to substantially improve their positioning in the embedded-systems development market. The MODUS tool will provide a model verification and Hardware/Software co-simulation tool (TRIAL) and a performance...... optimisation and customisable source-code generation tool (TUNE). The concept is depicted in automated modelling and optimisation of embedded-systems development. The tool will enable model verification by guiding the selection of existing open-source model verification engines, based on the automated analysis...

  3. Study of the source term of radiation of the CDTN GE-PET trace 8 cyclotron with the MCNPX code

    Energy Technology Data Exchange (ETDEWEB)

    Benavente C, J. A.; Lacerda, M. A. S.; Fonseca, T. C. F.; Da Silva, T. A. [Centro de Desenvolvimento da Tecnologia Nuclear / CNEN, Av. Pte. Antonio Carlos 6627, 31270-901 Belo Horizonte, Minas Gerais (Brazil); Vega C, H. R., E-mail: jhonnybenavente@gmail.com [Universidad Autonoma de Zacatecas, Unidad Academica de Estudios Nucleares, Cipres No. 10, Fracc. La Penuela, 98068 Zacatecas, Zac. (Mexico)

    2015-10-15

    Full text: The knowledge of the neutron spectra in a PET cyclotron is important for the optimization of radiation protection of the workers and individuals of the public. The main objective of this work is to study the source term of radiation of the GE-PET trace 8 cyclotron of the Development Center of Nuclear Technology (CDTN/CNEN) using computer simulation by the Monte Carlo method. The MCNPX version 2.7 code was used to calculate the flux of neutrons produced from the interaction of the primary proton beam with the target body and other cyclotron components, during 18F production. The estimate of the source term and the corresponding radiation field was performed from the bombardment of a H{sub 2}{sup 18}O target with protons of 75 μA current and 16.5 MeV of energy. The values of the simulated fluxes were compared with those reported by the accelerator manufacturer (GE Health care Company). Results showed that the fluxes estimated with the MCNPX codes were about 70% lower than the reported by the manufacturer. The mean energies of the neutrons were also different of that reported by GE Health Care. It is recommended to investigate other cross sections data and the use of physical models of the code itself for a complete characterization of the source term of radiation. (Author)

  4. Supporting the Cybercrime Investigation Process: Effective Discrimination of Source Code Authors Based on Byte-Level Information

    Science.gov (United States)

    Frantzeskou, Georgia; Stamatatos, Efstathios; Gritzalis, Stefanos

    Source code authorship analysis is the particular field that attempts to identify the author of a computer program by treating each program as a linguistically analyzable entity. This is usually based on other undisputed program samples from the same author. There are several cases where the application of such a method could be of a major benefit, such as tracing the source of code left in the system after a cyber attack, authorship disputes, proof of authorship in court, etc. In this paper, we present our approach which is based on byte-level n-gram profiles and is an extension of a method that has been successfully applied to natural language text authorship attribution. We propose a simplified profile and a new similarity measure which is less complicated than the algorithm followed in text authorship attribution and it seems more suitable for source code identification since is better able to deal with very small training sets. Experiments were performed on two different data sets, one with programs written in C++ and the second with programs written in Java. Unlike the traditional language-dependent metrics used by previous studies, our approach can be applied to any programming language with no additional cost. The presented accuracy rates are much better than the best reported results for the same data sets.

  5. Transparent ICD and DRG coding using information technology: linking and associating information sources with the eXtensible Markup Language.

    Science.gov (United States)

    Hoelzer, Simon; Schweiger, Ralf K; Dudeck, Joachim

    2003-01-01

    With the introduction of ICD-10 as the standard for diagnostics, it becomes necessary to develop an electronic representation of its complete content, inherent semantics, and coding rules. The authors' design relates to the current efforts by the CEN/TC 251 to establish a European standard for hierarchical classification systems in health care. The authors have developed an electronic representation of ICD-10 with the eXtensible Markup Language (XML) that facilitates integration into current information systems and coding software, taking different languages and versions into account. In this context, XML provides a complete processing framework of related technologies and standard tools that helps develop interoperable applications. XML provides semantic markup. It allows domain-specific definition of tags and hierarchical document structure. The idea of linking and thus combining information from different sources is a valuable feature of XML. In addition, XML topic maps are used to describe relationships between different sources, or "semantically associated" parts of these sources. The issue of achieving a standardized medical vocabulary becomes more and more important with the stepwise implementation of diagnostically related groups, for example. The aim of the authors' work is to provide a transparent and open infrastructure that can be used to support clinical coding and to develop further software applications. The authors are assuming that a comprehensive representation of the content, structure, inherent semantics, and layout of medical classification systems can be achieved through a document-oriented approach.

  6. Performance Analysis for Bit Error Rate of DS- CDMA Sensor Network Systems with Source Coding

    Directory of Open Access Journals (Sweden)

    Haider M. AlSabbagh

    2012-03-01

    Full Text Available The minimum energy (ME coding combined with DS-CDMA wireless sensor network is analyzed in order to reduce energy consumed and multiple access interference (MAI with related to number of user(receiver. Also, the minimum energy coding which exploits redundant bits for saving power with utilizing RF link and On-Off-Keying modulation. The relations are presented and discussed for several levels of errors expected in the employed channel via amount of bit error rates and amount of the SNR for number of users (receivers.

  7. Numerical modeling of the Linac4 negative ion source extraction region by 3D PIC-MCC code ONIX

    CERN Document Server

    Mochalskyy, S; Minea, T; Lifschitz, AF; Schmitzer, C; Midttun, O; Steyaert, D

    2013-01-01

    At CERN, a high performance negative ion (NI) source is required for the 160 MeV H- linear accelerator Linac4. The source is planned to produce 80 mA of H- with an emittance of 0.25 mm mradN-RMS which is technically and scientifically very challenging. The optimization of the NI source requires a deep understanding of the underling physics concerning the production and extraction of the negative ions. The extraction mechanism from the negative ion source is complex involving a magnetic filter in order to cool down electrons’ temperature. The ONIX (Orsay Negative Ion eXtraction) code is used to address this problem. The ONIX is a selfconsistent 3D electrostatic code using Particles-in-Cell Monte Carlo Collisions (PIC-MCC) approach. It was written to handle the complex boundary conditions between plasma, source walls, and beam formation at the extraction hole. Both, the positive extraction potential (25kV) and the magnetic field map are taken from the experimental set-up, in construction at CERN. This contrib...

  8. Active Fault Near-Source Zones Within and Bordering the State of California for the 1997 Uniform Building Code

    Science.gov (United States)

    Petersen, M.D.; Toppozada, Tousson R.; Cao, T.; Cramer, C.H.; Reichle, M.S.; Bryant, W.A.

    2000-01-01

    The fault sources in the Project 97 probabilistic seismic hazard maps for the state of California were used to construct maps for defining near-source seismic coefficients, Na and Nv, incorporated in the 1997 Uniform Building Code (ICBO 1997). The near-source factors are based on the distance from a known active fault that is classified as either Type A or Type B. To determine the near-source factor, four pieces of geologic information are required: (1) recognizing a fault and determining whether or not the fault has been active during the Holocene, (2) identifying the location of the fault at or beneath the ground surface, (3) estimating the slip rate of the fault, and (4) estimating the maximum earthquake magnitude for each fault segment. This paper describes the information used to produce the fault classifications and distances.

  9. Large-eddy simulation of convective boundary layer generated by highly heated source with open source code, OpenFOAM

    International Nuclear Information System (INIS)

    Hattori, Yasuo; Suto, Hitoshi; Eguchi, Yuzuru; Sano, Tadashi; Shirai, Koji; Ishihara, Shuji

    2011-01-01

    Spatial- and temporal-characteristics of turbulence structures in the close vicinity of a heat source, which is a horizontal upward-facing round plate heated at high temperature, are examined by using well resolved large-eddy simulations. The verification is carried out through the comparison with experiments: the predicted statistics, including the PDF distribution of temperature fluctuations, agree well with measurements, indicating that the present simulations have a capability to appropriately reproduce turbulence structures near the heat source. The reproduced three-dimensional thermal- and fluid-fields in the close vicinity of the heat source reveals developing processes of coherence structures along the surface: the stationary- and streaky-flow patterns appear near the edge, and such patterns randomly shift to cell-like patterns with incursion into the center region, resulting in thermal-plume meandering. Both the patterns have very thin structures, but the depth of streaky structure is considerably small compared with that of cell-like patterns; this discrepancy causes the layered structures. The structure is the source of peculiar turbulence characteristics, the prediction of which is quite difficult with RANS-type turbulence models. The understanding such structures obtained in present study must be helpful to improve the turbulence model used in nuclear engineering. (author)

  10. Limiting precision in differential equation solvers. II Sources of trouble and starting a code

    International Nuclear Information System (INIS)

    Shampine, L.F.

    1978-01-01

    The reasons a class of codes for solving ordinary differential equations might want to use an extremely small step size are investigated. For this class the likelihood of precision difficulties is evaluated and remedies examined. The investigations suggests a way of selecting automatically an initial step size which should be reliably on scale

  11. Beacon- and Schema-Based Method for Recognizing Algorithms from Students' Source Code

    Science.gov (United States)

    Taherkhani, Ahmad; Malmi, Lauri

    2013-01-01

    In this paper, we present a method for recognizing algorithms from students programming submissions coded in Java. The method is based on the concept of "programming schemas" and "beacons". Schemas are high-level programming knowledge with detailed knowledge abstracted out, and beacons are statements that imply specific…

  12. SPIDERMAN: an open-source code to model phase curves and secondary eclipses

    Science.gov (United States)

    Louden, Tom; Kreidberg, Laura

    2018-03-01

    We present SPIDERMAN (Secondary eclipse and Phase curve Integrator for 2D tempERature MAppiNg), a fast code for calculating exoplanet phase curves and secondary eclipses with arbitrary surface brightness distributions in two dimensions. Using a geometrical algorithm, the code solves exactly the area of sections of the disc of the planet that are occulted by the star. The code is written in C with a user-friendly Python interface, and is optimised to run quickly, with no loss in numerical precision. Approximately 1000 models can be generated per second in typical use, making Markov Chain Monte Carlo analyses practicable. The modular nature of the code allows easy comparison of the effect of multiple different brightness distributions for the dataset. As a test case we apply the code to archival data on the phase curve of WASP-43b using a physically motivated analytical model for the two dimensional brightness map. The model provides a good fit to the data; however, it overpredicts the temperature of the nightside. We speculate that this could be due to the presence of clouds on the nightside of the planet, or additional reflected light from the dayside. When testing a simple cloud model we find that the best fitting model has a geometric albedo of 0.32 ± 0.02 and does not require a hot nightside. We also test for variation of the map parameters as a function of wavelength and find no statistically significant correlations. SPIDERMAN is available for download at https://github.com/tomlouden/spiderman.

  13. SPIDERMAN: an open-source code to model phase curves and secondary eclipses

    Science.gov (United States)

    Louden, Tom; Kreidberg, Laura

    2018-06-01

    We present SPIDERMAN (Secondary eclipse and Phase curve Integrator for 2D tempERature MAppiNg), a fast code for calculating exoplanet phase curves and secondary eclipses with arbitrary surface brightness distributions in two dimensions. Using a geometrical algorithm, the code solves exactly the area of sections of the disc of the planet that are occulted by the star. The code is written in C with a user-friendly Python interface, and is optimized to run quickly, with no loss in numerical precision. Approximately 1000 models can be generated per second in typical use, making Markov Chain Monte Carlo analyses practicable. The modular nature of the code allows easy comparison of the effect of multiple different brightness distributions for the data set. As a test case, we apply the code to archival data on the phase curve of WASP-43b using a physically motivated analytical model for the two-dimensional brightness map. The model provides a good fit to the data; however, it overpredicts the temperature of the nightside. We speculate that this could be due to the presence of clouds on the nightside of the planet, or additional reflected light from the dayside. When testing a simple cloud model, we find that the best-fitting model has a geometric albedo of 0.32 ± 0.02 and does not require a hot nightside. We also test for variation of the map parameters as a function of wavelength and find no statistically significant correlations. SPIDERMAN is available for download at https://github.com/tomlouden/spiderman.

  14. Pre-coding method and apparatus for multiple source or time-shifted single source data and corresponding inverse post-decoding method and apparatus

    Science.gov (United States)

    Yeh, Pen-Shu (Inventor)

    1998-01-01

    A pre-coding method and device for improving data compression performance by removing correlation between a first original data set and a second original data set, each having M members, respectively. The pre-coding method produces a compression-efficiency-enhancing double-difference data set. The method and device produce a double-difference data set, i.e., an adjacent-delta calculation performed on a cross-delta data set or a cross-delta calculation performed on two adjacent-delta data sets, from either one of (1) two adjacent spectral bands coming from two discrete sources, respectively, or (2) two time-shifted data sets coming from a single source. The resulting double-difference data set is then coded using either a distortionless data encoding scheme (entropy encoding) or a lossy data compression scheme. Also, a post-decoding method and device for recovering a second original data set having been represented by such a double-difference data set.

  15. Pre-Test Analysis of the MEGAPIE Spallation Source Target Cooling Loop Using the TRAC/AAA Code

    International Nuclear Information System (INIS)

    Bubelis, Evaldas; Coddington, Paul; Leung, Waihung

    2006-01-01

    A pilot project is being undertaken at the Paul Scherrer Institute in Switzerland to test the feasibility of installing a Lead-Bismuth Eutectic (LBE) spallation target in the SINQ facility. Efforts are coordinated under the MEGAPIE project, the main objectives of which are to design, build, operate and decommission a 1 MW spallation neutron source. The technology and experience of building and operating a high power spallation target are of general interest in the design of an Accelerator Driven System (ADS) and in this context MEGAPIE is one of the key experiments. The target cooling is one of the important aspects of the target system design that needs to be studied in detail. Calculations were performed previously using the RELAP5/Mod 3.2.2 and ATHLET codes, but in order to verify the previous code results and to provide another capability to model LBE systems, a similar study of the MEGAPIE target cooling system has been conducted with the TRAC/AAA code. In this paper a comparison is presented for the steady-state results obtained using the above codes. Analysis of transients, such as unregulated cooling of the target, loss of heat sink, the main electro-magnetic pump trip of the LBE loop and unprotected proton beam trip, were studied with TRAC/AAA and compared to those obtained earlier using RELAP5/Mod 3.2.2. This work extends the existing validation data-base of TRAC/AAA to heavy liquid metal systems and comprises the first part of the TRAC/AAA code validation study for LBE systems based on data from the MEGAPIE test facility and corresponding inter-code comparisons. (authors)

  16. Radiation Shielding Information Center: a source of computer codes and data for fusion neutronics studies

    International Nuclear Information System (INIS)

    McGill, B.L.; Roussin, R.W.; Trubey, D.K.; Maskewitz, B.F.

    1980-01-01

    The Radiation Shielding Information Center (RSIC), established in 1962 to collect, package, analyze, and disseminate information, computer codes, and data in the area of radiation transport related to fission, is now being utilized to support fusion neutronics technology. The major activities include: (1) answering technical inquiries on radiation transport problems, (2) collecting, packaging, testing, and disseminating computing technology and data libraries, and (3) reviewing literature and operating a computer-based information retrieval system containing material pertinent to radiation transport analysis. The computer codes emphasize methods for solving the Boltzmann equation such as the discrete ordinates and Monte Carlo techniques, both of which are widely used in fusion neutronics. The data packages include multigroup coupled neutron-gamma-ray cross sections and kerma coefficients, other nuclear data, and radiation transport benchmark problem results

  17. kspectrum: an open-source code for high-resolution molecular absorption spectra production

    International Nuclear Information System (INIS)

    Eymet, V.; Coustet, C.; Piaud, B.

    2016-01-01

    We present the kspectrum, scientific code that produces high-resolution synthetic absorption spectra from public molecular transition parameters databases. This code was originally required by the atmospheric and astrophysics communities, and its evolution is now driven by new scientific projects among the user community. Since it was designed without any optimization that would be specific to any particular application field, its use could also be extended to other domains. kspectrum produces spectral data that can subsequently be used either for high-resolution radiative transfer simulations, or for producing statistic spectral model parameters using additional tools. This is a open project that aims at providing an up-to-date tool that takes advantage of modern computational hardware and recent parallelization libraries. It is currently provided by Méso-Star (http://www.meso-star.com) under the CeCILL license, and benefits from regular updates and improvements. (paper)

  18. Four energy group neutron flux distribution in the Syrian miniature neutron source reactor using the WIMSD4 and CITATION code

    International Nuclear Information System (INIS)

    Khattab, K.; Omar, H.; Ghazi, N.

    2009-01-01

    A 3-D (R, θ , Z) neutronic model for the Miniature Neutron Source Reactor (MNSR) was developed earlier to conduct the reactor neutronic analysis. The group constants for all the reactor components were generated using the WIMSD4 code. The reactor excess reactivity and the four group neutron flux distributions were calculated using the CITATION code. This model is used in this paper to calculate the point wise four energy group neutron flux distributions in the MNSR versus the radius, angle and reactor axial directions. Good agreement is noticed between the measured and the calculated thermal neutron flux in the inner and the outer irradiation site with relative difference less than 7% and 5% respectively. (author)

  19. Investigation of Anisotropy Caused by Cylinder Applicator on Dose Distribution around Cs-137 Brachytherapy Source using MCNP4C Code

    Directory of Open Access Journals (Sweden)

    Sedigheh Sina

    2011-06-01

    Full Text Available Introduction: Brachytherapy is a type of radiotherapy in which radioactive sources are used in proximity of tumors normally for treatment of malignancies in the head, prostate and cervix. Materials and Methods: The Cs-137 Selectron source is a low-dose-rate (LDR brachytherapy source used in a remote afterloading system for treatment of different cancers. This system uses active and inactive spherical sources of 2.5 mm diameter, which can be used in different configurations inside the applicator to obtain different dose distributions. In this study, first the dose distribution at different distances from the source was obtained around a single pellet inside the applicator in a water phantom using the MCNP4C Monte Carlo code. The simulations were then repeated for six active pellets in the applicator and for six point sources.  Results: The anisotropy of dose distribution due to the presence of the applicator was obtained by division of dose at each distance and angle to the dose at the same distance and angle of 90 degrees. According to the results, the doses decreased towards the applicator tips. For example, for points at the distances of 5 and 7 cm from the source and angle of 165 degrees, such discrepancies reached 5.8% and 5.1%, respectively.  By increasing the number of pellets to six, these values reached 30% for the angle of 5 degrees. Discussion and Conclusion: The results indicate that the presence of the applicator causes a significant dose decrease at the tip of the applicator compared with the dose in the transverse plane. However, the treatment planning systems consider an isotropic dose distribution around the source and this causes significant errors in treatment planning, which are not negligible, especially for a large number of sources inside the applicator.

  20. Developing open-source codes for electromagnetic geophysics using industry support

    Science.gov (United States)

    Key, K.

    2017-12-01

    Funding for open-source software development in academia often takes the form of grants and fellowships awarded by government bodies and foundations where there is no conflict-of-interest between the funding entity and the free dissemination of the open-source software products. Conversely, funding for open-source projects in the geophysics industry presents challenges to conventional business models where proprietary licensing offers value that is not present in open-source software. Such proprietary constraints make it easier to convince companies to fund academic software development under exclusive software distribution agreements. A major challenge for obtaining commercial funding for open-source projects is to offer a value proposition that overcomes the criticism that such funding is a give-away to the competition. This work draws upon a decade of experience developing open-source electromagnetic geophysics software for the oil, gas and minerals exploration industry, and examines various approaches that have been effective for sustaining industry sponsorship.

  1. Calculation of the effective dose from natural radioactivity sources in soil using MCNP code

    International Nuclear Information System (INIS)

    Krstic, D.; Nikezic, D.

    2008-01-01

    Full text: Effective dose delivered by photon emitted from natural radioactivity in soil was calculated in this report. Calculations have been done for the most common natural radionuclides in soil as 238 U, 232 Th series and 40 K. A ORNL age-dependent phantom and the Monte Carlo transport code MCNP-4B were employed to calculate the energy deposited in all organs of phantom.The effective dose was calculated according to ICRP74 recommendations. Conversion coefficients of effective dose per air kerma were determined. Results obtained here were compared with other authors

  2. In-vessel source term analysis code TRACER version 2.3. User's manual

    International Nuclear Information System (INIS)

    Toyohara, Daisuke; Ohno, Shuji; Hamada, Hirotsugu; Miyahara, Shinya

    2005-01-01

    A computer code TRACER (Transport Phenomena of Radionuclides for Accident Consequence Evaluation of Reactor) version 2.3 has been developed to evaluate species and quantities of fission products (FPs) released into cover gas during a fuel pin failure accident in an LMFBR. The TRACER version 2.3 includes new or modified models shown below. a) Both model: a new model for FPs release from fuel. b) Modified model for FPs transfer from fuel to bubbles or sodium coolant. c) Modified model for bubbles dynamics in coolant. Computational models, input data and output data of the TRACER version 2.3 are described in this user's manual. (author)

  3. SMILEI: A collaborative, open-source, multi-purpose PIC code for the next generation of super-computers

    Science.gov (United States)

    Grech, Mickael; Derouillat, J.; Beck, A.; Chiaramello, M.; Grassi, A.; Niel, F.; Perez, F.; Vinci, T.; Fle, M.; Aunai, N.; Dargent, J.; Plotnikov, I.; Bouchard, G.; Savoini, P.; Riconda, C.

    2016-10-01

    Over the last decades, Particle-In-Cell (PIC) codes have been central tools for plasma simulations. Today, new trends in High-Performance Computing (HPC) are emerging, dramatically changing HPC-relevant software design and putting some - if not most - legacy codes far beyond the level of performance expected on the new and future massively-parallel super computers. SMILEI is a new open-source PIC code co-developed by both plasma physicists and HPC specialists, and applied to a wide range of physics-related studies: from laser-plasma interaction to astrophysical plasmas. It benefits from an innovative parallelization strategy that relies on a super-domain-decomposition allowing for enhanced cache-use and efficient dynamic load balancing. Beyond these HPC-related developments, SMILEI also benefits from additional physics modules allowing to deal with binary collisions, field and collisional ionization and radiation back-reaction. This poster presents the SMILEI project, its HPC capabilities and illustrates some of the physics problems tackled with SMILEI.

  4. Simulation of droplet impact onto a deep pool for large Froude numbers in different open-source codes

    Science.gov (United States)

    Korchagova, V. N.; Kraposhin, M. V.; Marchevsky, I. K.; Smirnova, E. V.

    2017-11-01

    A droplet impact on a deep pool can induce macro-scale or micro-scale effects like a crown splash, a high-speed jet, formation of secondary droplets or thin liquid films, etc. It depends on the diameter and velocity of the droplet, liquid properties, effects of external forces and other factors that a ratio of dimensionless criteria can account for. In the present research, we considered the droplet and the pool consist of the same viscous incompressible liquid. We took surface tension into account but neglected gravity forces. We used two open-source codes (OpenFOAM and Gerris) for our computations. We review the possibility of using these codes for simulation of processes in free-surface flows that may take place after a droplet impact on the pool. Both codes simulated several modes of droplet impact. We estimated the effect of liquid properties with respect to the Reynolds number and Weber number. Numerical simulation enabled us to find boundaries between different modes of droplet impact on a deep pool and to plot corresponding mode maps. The ratio of liquid density to that of the surrounding gas induces several changes in mode maps. Increasing this density ratio suppresses the crown splash.

  5. Bug-Fixing and Code-Writing: The Private Provision of Open Source Software

    DEFF Research Database (Denmark)

    Bitzer, Jürgen; Schröder, Philipp

    2002-01-01

    Open source software (OSS) is a public good. A self-interested individual would consider providing such software, if the benefits he gained from having it justified the cost of programming. Nevertheless each agent is tempted to free ride and wait for others to develop the software instead...

  6. SETMDC: Preprocessor for CHECKR, FIZCON, INTER, etc. ENDF Utility source codes

    International Nuclear Information System (INIS)

    Dunford, Charles L.

    2002-01-01

    Description of program or function: SETMDC-6.13 is a utility program that converts the source decks of the following set of programs to different computers: CHECKR-6.13; FIZCON-6.13; GETMAT-6.13; INTER-6.13; LISTEF-6; PLOTEF-6; PSYCHE-6; STANEF-6.13

  7. ON CODE REFACTORING OF THE DIALOG SUBSYSTEM OF CDSS PLATFORM FOR THE OPEN-SOURCE MIS OPENMRS

    Directory of Open Access Journals (Sweden)

    A. V. Semenets

    2016-08-01

    The open-source MIS OpenMRS developer tools and software API are reviewed. The results of code refactoring of the dialog subsystem of the CDSS platform which is made as module for the open-source MIS OpenMRS are presented. The structure of information model of database of the CDSS dialog subsystem was updated according with MIS OpenMRS requirements. The Model-View-Controller (MVC based approach to the CDSS dialog subsystem architecture was re-implemented with Java programming language using Spring and Hibernate frameworks. The MIS OpenMRS Encounter portlet form for the CDSS dialog subsystem integration is developed as an extension. The administrative module of the CDSS platform is recreated. The data exchanging formats and methods for interaction of OpenMRS CDSS dialog subsystem module and DecisionTree GAE service are re-implemented with help of AJAX technology via jQuery library

  8. Freely tunable broadband polarization rotator for terahertz waves.

    Science.gov (United States)

    Fan, Ren-Hao; Zhou, Yu; Ren, Xiao-Ping; Peng, Ru-Wen; Jiang, Shang-Chi; Xu, Di-Hu; Xiong, Xiang; Huang, Xian-Rong; Wang, Mu

    2015-02-18

    A freely tunable polarization rotator for broadband terahertz waves is demonstrated using a three-rotating-layer metallic grating structure, which can conveniently rotate the polarization of a linearly polarized terahertz wave to any desired direction with nearly perfect conversion efficiency. This low-cost, high-efficiency, and freely tunable device has potential applications as material analysis, wireless communication, and THz imaging. © 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  9. An alternative technique for simulating volumetric cylindrical sources in the Morse code utilization

    International Nuclear Information System (INIS)

    Vieira, W.J.; Mendonca, A.G.

    1985-01-01

    In the solution of deep-penetration problems using the Monte Carlo method, calculation techniques and strategies are used in order to increase the particle population in the regions of interest. A common procedure is the coupling of bidimensional calculations, with (r,z) discrete ordinates transformed into source data, and tridimensional Monte Carlo calculations. An alternative technique for this procedure is presented. This alternative proved effective when applied to a sample problem. (F.E.) [pt

  10. Real-Time Motion Capture Toolbox (RTMocap): an open-source code for recording 3-D motion kinematics to study action-effect anticipations during motor and social interactions.

    Science.gov (United States)

    Lewkowicz, Daniel; Delevoye-Turrell, Yvonne

    2016-03-01

    We present here a toolbox for the real-time motion capture of biological movements that runs in the cross-platform MATLAB environment (The MathWorks, Inc., Natick, MA). It provides instantaneous processing of the 3-D movement coordinates of up to 20 markers at a single instant. Available functions include (1) the setting of reference positions, areas, and trajectories of interest; (2) recording of the 3-D coordinates for each marker over the trial duration; and (3) the detection of events to use as triggers for external reinforcers (e.g., lights, sounds, or odors). Through fast online communication between the hardware controller and RTMocap, automatic trial selection is possible by means of either a preset or an adaptive criterion. Rapid preprocessing of signals is also provided, which includes artifact rejection, filtering, spline interpolation, and averaging. A key example is detailed, and three typical variations are developed (1) to provide a clear understanding of the importance of real-time control for 3-D motion in cognitive sciences and (2) to present users with simple lines of code that can be used as starting points for customizing experiments using the simple MATLAB syntax. RTMocap is freely available (http://sites.google.com/site/RTMocap/) under the GNU public license for noncommercial use and open-source development, together with sample data and extensive documentation.

  11. Advanced Neutron Source Dynamic Model (ANSDM) code description and user guide

    International Nuclear Information System (INIS)

    March-Leuba, J.

    1995-08-01

    A mathematical model is designed that simulates the dynamic behavior of the Advanced Neutron Source (ANS) reactor. Its main objective is to model important characteristics of the ANS systems as they are being designed, updated, and employed; its primary design goal, to aid in the development of safety and control features. During the simulations the model is also found to aid in making design decisions for thermal-hydraulic systems. Model components, empirical correlations, and model parameters are discussed; sample procedures are also given. Modifications are cited, and significant development and application efforts are noted focusing on examination of instrumentation required during and after accidents to ensure adequate monitoring during transient conditions

  12. Basic design of the HANARO cold neutron source using MCNP code

    International Nuclear Information System (INIS)

    Yu, Yeong Jin; Lee, Kye Hong; Kim, Young Jin; Hwang, Dong Gil

    2005-01-01

    The design of the Cold Neutron Source (CNS) for the HANARO research reactor is on progress. The CNS produces neutrons in the low energy range less than 5meV using liquid hydrogen at around 21.6 K as the moderator. The primary goal for the CNS design is to maximize the cold neutron flux with wavelengths of around 2 ∼ 12 A and to minimize the nuclear heat load. In this paper, the basic design of the HANARO CNS is described

  13. Personalized reminiscence therapy M-health application for patients living with dementia: Innovating using open source code repository.

    Science.gov (United States)

    Zhang, Melvyn W B; Ho, Roger C M

    2017-01-01

    Dementia is known to be an illness which brings forth marked disability amongst the elderly individuals. At times, patients living with dementia do also experience non-cognitive symptoms, and these symptoms include that of hallucinations, delusional beliefs as well as emotional liability, sexualized behaviours and aggression. According to the National Institute of Clinical Excellence (NICE) guidelines, non-pharmacological techniques are typically the first-line option prior to the consideration of adjuvant pharmacological options. Reminiscence and music therapy are thus viable options. Lazar et al. [3] previously performed a systematic review with regards to the utilization of technology to delivery reminiscence based therapy to individuals who are living with dementia and has highlighted that technology does have benefits in the delivery of reminiscence therapy. However, to date, there has been a paucity of M-health innovations in this area. In addition, most of the current innovations are not personalized for each of the person living with Dementia. Prior research has highlighted the utility for open source repository in bioinformatics study. The authors hoped to explain how they managed to tap upon and make use of open source repository in the development of a personalized M-health reminiscence therapy innovation for patients living with dementia. The availability of open source code repository has changed the way healthcare professionals and developers develop smartphone applications today. Conventionally, a long iterative process is needed in the development of native application, mainly because of the need for native programming and coding, especially so if the application needs to have interactive features or features that could be personalized. Such repository enables the rapid and cost effective development of application. Moreover, developers are also able to further innovate, as less time is spend in the iterative process.

  14. Self characterization of a coded aperture array for neutron source imaging

    Energy Technology Data Exchange (ETDEWEB)

    Volegov, P. L., E-mail: volegov@lanl.gov; Danly, C. R.; Guler, N.; Merrill, F. E.; Wilde, C. H. [Los Alamos National Laboratory, Los Alamos, New Mexico 87544 (United States); Fittinghoff, D. N. [Livermore National Laboratory, Livermore, California 94550 (United States)

    2014-12-15

    The neutron imaging system at the National Ignition Facility (NIF) is an important diagnostic tool for measuring the two-dimensional size and shape of the neutrons produced in the burning deuterium-tritium plasma during the stagnation stage of inertial confinement fusion implosions. Since the neutron source is small (∼100 μm) and neutrons are deeply penetrating (>3 cm) in all materials, the apertures used to achieve the desired 10-μm resolution are 20-cm long, triangular tapers machined in gold foils. These gold foils are stacked to form an array of 20 apertures for pinhole imaging and three apertures for penumbral imaging. These apertures must be precisely aligned to accurately place the field of view of each aperture at the design location, or the location of the field of view for each aperture must be measured. In this paper we present a new technique that has been developed for the measurement and characterization of the precise location of each aperture in the array. We present the detailed algorithms used for this characterization and the results of reconstructed sources from inertial confinement fusion implosion experiments at NIF.

  15. For fun and profit a history of the free and open source software revolution

    CERN Document Server

    Tozzi, Christopher

    2017-01-01

    In the 1980s, there was a revolution with far-reaching consequences -- a revolution to restore software freedom. In the early 1980s, after decades of making source code available with programs, most programmers ceased sharing code freely. A band of revolutionaries, self-described "hackers," challenged this new norm by building operating systems with source code that could be freely shared. In For Fun and Profit, Christopher Tozzi offers an account of the free and open source software (FOSS) revolution, from its origins as an obscure, marginal effort by a small group of programmers to the widespread commercial use of open source software today. Tozzi explains FOSS's historical trajectory, shaped by eccentric personalities -- including Richard Stallman and Linus Torvalds -- and driven both by ideology and pragmatism, by fun and profit. Tozzi examines hacker culture and its influence on the Unix operating system, the reaction to Unix's commercialization, and the history of early Linux development. He describes ...

  16. Delaunay Tetrahedralization of the Heart Based on Integration of Open Source Codes

    International Nuclear Information System (INIS)

    Pavarino, E; Neves, L A; Machado, J M; Momente, J C; Zafalon, G F D; Pinto, A R; Valêncio, C R; Godoy, M F de; Shiyou, Y; Nascimento, M Z do

    2014-01-01

    The Finite Element Method (FEM) is a way of numerical solution applied in different areas, as simulations used in studies to improve cardiac ablation procedures. For this purpose, the meshes should have the same size and histological features of the focused structures. Some methods and tools used to generate tetrahedral meshes are limited mainly by the use conditions. In this paper, the integration of Open Source Softwares is presented as an alternative to solid modeling and automatic mesh generation. To demonstrate its efficiency, the cardiac structures were considered as a first application context: atriums, ventricles, valves, arteries and pericardium. The proposed method is feasible to obtain refined meshes in an acceptable time and with the required quality for simulations using FEM

  17. Production of freely-migrating defects during irradiation

    International Nuclear Information System (INIS)

    Rehn, L.E.; Okamoto, P.R.

    1986-09-01

    During irradiation at elevated temperatures, vacancy and interstitial defects that escape can produce several different types of microstructural changes. Hence the production rate of freely-migrating defects must be known as a function of irradiating particle species and energy before quantitative correlations can be made between microstructural changes. Our fundamental knowledge of freely-migrating defect production has increased substantially in recent years. Critical experimental findings that led to the improved understanding are reviewed in this paper. A strong similarity is found for the dependence of freely-migrating defect production on primary recoil energy as measured in a variety of metals and alloys by different authors. The efficiency for producing freely-migrating defects decreases much more strongly with increasing primary recoil energy than does the efficiency for creating stable defects at liquid helium temperatures. The stronger decrease can be understood in terms of additional intracascade recombination that results from the nonrandom distribution of defects existing in the primary damage state for high primary recoil energies. Although the existing data base is limited to fcc materials, the strong similarity in the reported investigations suggests that the same dependence of freely-migrating defect production on primary recoil energy may be characteristic of a wide variety of other alloy systems as well. 52 refs., 4 figs

  18. The Journey of a Source Line: How your Code is Translated into a Controlled Flow of Electrons

    CERN Multimedia

    CERN. Geneva

    2018-01-01

    In this series we help you understand the bits and pieces that make your code command the underlying hardware. A multitude of layers translate and optimize source code, written in compiled and interpreted programming languages such as C++, Python or Java, to machine language. We explain the role and behavior of the layers in question in a typical usage scenario. While our main focus is on compilers and interpreters, we also talk about other facilities - such as the operating system, instruction sets and instruction decoders.   Biographie: Andrzej Nowak runs TIK Services, a technology and innovation consultancy based in Geneva, Switzerland. In the recent past, he co-founded and sold an award-winning Fintech start-up focused on peer-to-peer lending. Earlier, Andrzej worked at Intel and in the CERN openlab. At openlab, he managed a lab collaborating with Intel and was part of the Chief Technology Office, which set up next-generation technology projects for CERN and the openlab partne...

  19. The Journey of a Source Line: How your Code is Translated into a Controlled Flow of Electrons

    CERN Multimedia

    CERN. Geneva

    2018-01-01

    In this series we help you understand the bits and pieces that make your code command the underlying hardware. A multitude of layers translate and optimize source code, written in compiled and interpreted programming languages such as C++, Python or Java, to machine language. We explain the role and behavior of the layers in question in a typical usage scenario. While our main focus is on compilers and interpreters, we also talk about other facilities - such as the operating system, instruction sets and instruction decoders. Biographie: Andrzej Nowak runs TIK Services, a technology and innovation consultancy based in Geneva, Switzerland. In the recent past, he co-founded and sold an award-winning Fintech start-up focused on peer-to-peer lending. Earlier, Andrzej worked at Intel and in the CERN openlab. At openlab, he managed a lab collaborating with Intel and was part of the Chief Technology Office, which set up next-generation technology projects for CERN and the openlab partners.

  20. Review of the status of validation of the computer codes used in the severe accident source term reassessment study (BMI-2104)

    International Nuclear Information System (INIS)

    Kress, T.S.

    1985-04-01

    The determination of severe accident source terms must, by necessity it seems, rely heavily on the use of complex computer codes. Source term acceptability, therefore, rests on the assessed validity of such codes. Consequently, one element of NRC's recent efforts to reassess LWR severe accident source terms is to provide a review of the status of validation of the computer codes used in the reassessment. The results of this review is the subject of this document. The separate review documents compiled in this report were used as a resource along with the results of the BMI-2104 study by BCL and the QUEST study by SNL to arrive at a more-or-less independent appraisal of the status of source term modeling at this time

  1. Concurrent reflectance imaging and microdialysis in the freely behaving cat

    DEFF Research Database (Denmark)

    Poe, G R; Nitz, D A; Rector, D M

    1996-01-01

    We present a method to perform simultaneous microdialysis with light reflectance imaging of neural activity in a discrete brain region of the freely behaving animal. We applied this method to the dorsal hippocampus of freely behaving cats to (1) measure extracellular glutamate and reflectance...... imaged neural activity. Sequential images showed that cocaine perfusion elicited a propagating reflectance change as cocaine reached the tissue. Microperfusion of hypo-osmotic solution ( - 100 mOsm), which increases cell volume, decreased reflectance. Microperfusion of hyperosmotic sucrose solutions...

  2. Assessment of gamma irradiation heating and damage in miniature neutron source reactor vessel using computational methods and SRIM - TRIM code

    International Nuclear Information System (INIS)

    Appiah-Ofori, F. F.

    2014-07-01

    The Effects of Gamma Radiation Heating and Irradiation Damage in the reactor vessel of Ghana Research Reactor 1, Miniature Neutron Source Reactor were assessed using Implicit Control Volume Finite Difference Numerical Computation and validated by SRIM - TRIM Code. It was assumed that 5.0 MeV of gamma rays from the reactor core generate heat which interact and absorbed completely by the interior surface of the MNSR vessel which affects it performance due to the induced displacement damage. This displacement damage is as result of lattice defects being created which impair the vessel through formation of point defect clusters such as vacancies and interstitiaIs which can result in dislocation loops and networks, voids and bubbles and causing changes in the layers in the thickness of the vessel. The microscopic defects produced in the vessel due to γ - radiation damage are referred to as radiation damage while the defects thus produced modify the macroscopic properties of the vessel which are also known as the radiation effects. These radiation damage effects are of major concern for materials used in nuclear energy production. In this study, the overall objective was to assess the effects of gamma radiation heating and damage in GHARR - I MNSR vessel by a well-developed Mathematical model, Analytical and Numerical solutions, simulating the radiation damage in the vessel. SRIM - TRIM Code was used as a computational tool to determine the displacement per atom (dpa) associated with radiation damage while implicit Control Volume Finite Difference Method was used to determine the temperature profile within the vessel due to γ - radiation heating respectively. The methodology adopted in assessing γ - radiation heating in the vessel involved development of the One-Dimensional Steady State Fourier Heat Conduction Equation with Volumetric Heat Generation both analytical and implicit Control Volume Finite Difference Method approach to determine the maximum temperature and

  3. HELIOS: An Open-source, GPU-accelerated Radiative Transfer Code for Self-consistent Exoplanetary Atmospheres

    Science.gov (United States)

    Malik, Matej; Grosheintz, Luc; Mendonça, João M.; Grimm, Simon L.; Lavie, Baptiste; Kitzmann, Daniel; Tsai, Shang-Min; Burrows, Adam; Kreidberg, Laura; Bedell, Megan; Bean, Jacob L.; Stevenson, Kevin B.; Heng, Kevin

    2017-02-01

    We present the open-source radiative transfer code named HELIOS, which is constructed for studying exoplanetary atmospheres. In its initial version, the model atmospheres of HELIOS are one-dimensional and plane-parallel, and the equation of radiative transfer is solved in the two-stream approximation with nonisotropic scattering. A small set of the main infrared absorbers is employed, computed with the opacity calculator HELIOS-K and combined using a correlated-k approximation. The molecular abundances originate from validated analytical formulae for equilibrium chemistry. We compare HELIOS with the work of Miller-Ricci & Fortney using a model of GJ 1214b, and perform several tests, where we find: model atmospheres with single-temperature layers struggle to converge to radiative equilibrium; k-distribution tables constructed with ≳ 0.01 cm-1 resolution in the opacity function (≲ {10}3 points per wavenumber bin) may result in errors ≳ 1%-10% in the synthetic spectra; and a diffusivity factor of 2 approximates well the exact radiative transfer solution in the limit of pure absorption. We construct “null-hypothesis” models (chemical equilibrium, radiative equilibrium, and solar elemental abundances) for six hot Jupiters. We find that the dayside emission spectra of HD 189733b and WASP-43b are consistent with the null hypothesis, while the latter consistently underpredicts the observed fluxes of WASP-8b, WASP-12b, WASP-14b, and WASP-33b. We demonstrate that our results are somewhat insensitive to the choice of stellar models (blackbody, Kurucz, or PHOENIX) and metallicity, but are strongly affected by higher carbon-to-oxygen ratios. The code is publicly available as part of the Exoclimes Simulation Platform (exoclime.net).

  4. A new open-source code for spherically symmetric stellar collapse to neutron stars and black holes

    International Nuclear Information System (INIS)

    O'Connor, Evan; Ott, Christian D

    2010-01-01

    We present the new open-source spherically symmetric general-relativistic (GR) hydrodynamics code GR1D. It is based on the Eulerian formulation of GR hydrodynamics (GRHD) put forth by Romero-Ibanez-Gourgoulhon and employs radial-gauge, polar-slicing coordinates in which the 3+1 equations simplify substantially. We discretize the GRHD equations with a finite-volume scheme, employing piecewise-parabolic reconstruction and an approximate Riemann solver. GR1D is intended for the simulation of stellar collapse to neutron stars and black holes and will also serve as a testbed for modeling technology to be incorporated in multi-D GR codes. Its GRHD part is coupled to various finite-temperature microphysical equations of state in tabulated form that we make available with GR1D. An approximate deleptonization scheme for the collapse phase and a neutrino-leakage/heating scheme for the postbounce epoch are included and described. We also derive the equations for effective rotation in 1D and implement them in GR1D. We present an array of standard test calculations and also show how simple analytic equations of state in combination with presupernova models from stellar evolutionary calculations can be used to study qualitative aspects of black hole formation in failing rotating core-collapse supernovae. In addition, we present a simulation with microphysical equations of state and neutrino leakage/heating of a failing core-collapse supernova and black hole formation in a presupernova model of a 40 M o-dot zero-age main-sequence star. We find good agreement on the time of black hole formation (within 20%) and last stable protoneutron star mass (within 10%) with predictions from simulations with full Boltzmann neutrino radiation hydrodynamics.

  5. A new open-source code for spherically symmetric stellar collapse to neutron stars and black holes

    Energy Technology Data Exchange (ETDEWEB)

    O' Connor, Evan; Ott, Christian D, E-mail: evanoc@tapir.caltech.ed, E-mail: cott@tapir.caltech.ed [TAPIR, Mail Code 350-17, California Institute of Technology, Pasadena, CA 91125 (United States)

    2010-06-07

    We present the new open-source spherically symmetric general-relativistic (GR) hydrodynamics code GR1D. It is based on the Eulerian formulation of GR hydrodynamics (GRHD) put forth by Romero-Ibanez-Gourgoulhon and employs radial-gauge, polar-slicing coordinates in which the 3+1 equations simplify substantially. We discretize the GRHD equations with a finite-volume scheme, employing piecewise-parabolic reconstruction and an approximate Riemann solver. GR1D is intended for the simulation of stellar collapse to neutron stars and black holes and will also serve as a testbed for modeling technology to be incorporated in multi-D GR codes. Its GRHD part is coupled to various finite-temperature microphysical equations of state in tabulated form that we make available with GR1D. An approximate deleptonization scheme for the collapse phase and a neutrino-leakage/heating scheme for the postbounce epoch are included and described. We also derive the equations for effective rotation in 1D and implement them in GR1D. We present an array of standard test calculations and also show how simple analytic equations of state in combination with presupernova models from stellar evolutionary calculations can be used to study qualitative aspects of black hole formation in failing rotating core-collapse supernovae. In addition, we present a simulation with microphysical equations of state and neutrino leakage/heating of a failing core-collapse supernova and black hole formation in a presupernova model of a 40 M{sub o-dot} zero-age main-sequence star. We find good agreement on the time of black hole formation (within 20%) and last stable protoneutron star mass (within 10%) with predictions from simulations with full Boltzmann neutrino radiation hydrodynamics.

  6. Documentation of Source Code.

    Science.gov (United States)

    1988-05-12

    the "load IC" menu option. A prompt will appear in the typescript window requesting the name of the knowledge base to be loaded. Enter...highlighted and then a prompt will appear in the typescript window. The prompt will be requesting the name of the file containing the message to be read in...the file name, the system will begin reading in the message. The listified message is echoed back in the typescript window. After that, the screen

  7. An investigation of the challenges in reconstructing PET images of a freely moving animal

    International Nuclear Information System (INIS)

    Akhtar, Mahmood; Kyme, Andre; Meikle, Steven; Zhou, Victor; Fulton, Roger

    2013-01-01

    Imaging the brain of a freely moving small animal using positron emission tomography (PET) while simultaneously observing its behaviour is an important goal for neuroscience. While we have successfully demonstrated the use of line-of-response (LOR) rebinning to correct the head motion of confined animals, a large proportion of events may need to be discarded because they either 'miss' the detector array after transformation or fall out of the acceptance range of a sinogram. The proportion of events that would have been measured had motion not occurred, so-called 'lost events', is expected to be even larger for freely moving animals. Moreover, the data acquisition in the case of a freely moving animal is further complicated by a complex attenuation field. The aims of this study were (a) to characterise the severity of 'lost events' problem for the freely moving animal scenario, and (b) to investigate the relative impact of attenuation correction errors on quantitative accuracy of reconstructed images. A phantom study was performed to simulate the uncorrelated motion of a target and non-target source volume. A small animal PET scanner was used to acquire list-mode data for different sets of phantom positions. The list-mode data were processed using the standard LOR rebinning approach, and multiple frame variants of this designed to reduce discarded events. We found that LOR rebinning caused up to 86 % 'lost events', and artifacts that we attribute to incomplete projections, when applied to a freely moving target. This fraction was reduced by up to 18 % using the variant approaches, resulting in slightly reduced image artifacts. The effect of the non-target compartment on attenuation correction of the target volume was surprisingly small. However, for certain poses where the target and non-target volumes are aligned transaxially in the field-of-view, the attenuation problem becomes more complex and sophisticated correction methods will be required. We conclude that

  8. Assessment of Mining Extent and Expansion in Myanmar Based on Freely-Available Satellite Imagery

    Directory of Open Access Journals (Sweden)

    Katherine J. LaJeunesse Connette

    2016-11-01

    Full Text Available Using freely-available data and open-source software, we developed a remote sensing methodology to identify mining areas and assess recent mining expansion in Myanmar. Our country-wide analysis used Landsat 8 satellite data from a select number of mining areas to create a raster layer of potential mining areas. We used this layer to guide a systematic scan of freely-available fine-resolution imagery, such as Google Earth, in order to digitize likely mining areas. During this process, each mining area was assigned a ranking indicating our certainty in correct identification of the mining land use. Finally, we identified areas of recent mining expansion based on the change in albedo, or brightness, between Landsat images from 2002 and 2015. We identified 90,041 ha of potential mining areas in Myanmar, of which 58% (52,312 ha was assigned high certainty, 29% (26,251 ha medium certainty, and 13% (11,478 ha low certainty. Of the high-certainty mining areas, 62% of bare ground was disturbed (had a large increase in albedo since 2002. This four-month project provides the first publicly-available database of mining areas in Myanmar, and it demonstrates an approach for large-scale assessment of mining extent and expansion based on freely-available data.

  9. Implementation of inter-unit analysis for C and C++ languages in a source-based static code analyzer

    Directory of Open Access Journals (Sweden)

    A. V. Sidorin

    2015-01-01

    Full Text Available The proliferation of automated testing capabilities arises a need for thorough testing of large software systems, including system inter-component interfaces. The objective of this research is to build a method for inter-procedural inter-unit analysis, which allows us to analyse large and complex software systems including multi-architecture projects (like Android OS as well as to support complex assembly systems of projects. Since the selected Clang Static Analyzer uses source code directly as input data, we need to develop a special technique to enable inter-unit analysis for such analyzer. This problem is of special nature because of C and C++ language features that assume and encourage the separate compilation of project files. We describe the build and analysis system that was implemented around Clang Static Analyzer to enable inter-unit analysis and consider problems related to support of complex projects. We also consider the task of merging abstract source trees of translation units and its related problems such as handling conflicting definitions, complex build systems and complex projects support, including support for multi-architecture projects, with examples. We consider both issues related to language design and human-related mistakes (that may be intentional. We describe some heuristics that were used for this work to make the merging process faster. The developed system was tested using Android OS as the input to show it is applicable even for such complicated projects. This system does not depend on the inter-procedural analysis method and allows the arbitrary change of its algorithm.

  10. Validation of the coupling of mesh models to GEANT4 Monte Carlo code for simulation of internal sources of photons

    International Nuclear Information System (INIS)

    Caribe, Paulo Rauli Rafeson Vasconcelos; Cassola, Vagner Ferreira; Kramer, Richard; Khoury, Helen Jamil

    2013-01-01

    The use of three-dimensional models described by polygonal meshes in numerical dosimetry enables more accurate modeling of complex objects than the use of simple solid. The objectives of this work were validate the coupling of mesh models to the Monte Carlo code GEANT4 and evaluate the influence of the number of vertices in the simulations to obtain absorbed fractions of energy (AFEs). Validation of the coupling was performed to internal sources of photons with energies between 10 keV and 1 MeV for spherical geometries described by the GEANT4 and three-dimensional models with different number of vertices and triangular or quadrilateral faces modeled using Blender program. As a result it was found that there were no significant differences between AFEs for objects described by mesh models and objects described using solid volumes of GEANT4. Since that maintained the shape and the volume the decrease in the number of vertices to describe an object does not influence so meant dosimetric data, but significantly decreases the time required to achieve the dosimetric calculations, especially for energies less than 100 keV

  11. Vector Network Coding Algorithms

    OpenAIRE

    Ebrahimi, Javad; Fragouli, Christina

    2010-01-01

    We develop new algebraic algorithms for scalar and vector network coding. In vector network coding, the source multicasts information by transmitting vectors of length L, while intermediate nodes process and combine their incoming packets by multiplying them with L x L coding matrices that play a similar role as coding c in scalar coding. Our algorithms for scalar network jointly optimize the employed field size while selecting the coding coefficients. Similarly, for vector coding, our algori...

  12. DeNovoGUI: an open source graphical user interface for de novo sequencing of tandem mass spectra.

    Science.gov (United States)

    Muth, Thilo; Weilnböck, Lisa; Rapp, Erdmann; Huber, Christian G; Martens, Lennart; Vaudel, Marc; Barsnes, Harald

    2014-02-07

    De novo sequencing is a popular technique in proteomics for identifying peptides from tandem mass spectra without having to rely on a protein sequence database. Despite the strong potential of de novo sequencing algorithms, their adoption threshold remains quite high. We here present a user-friendly and lightweight graphical user interface called DeNovoGUI for running parallelized versions of the freely available de novo sequencing software PepNovo+, greatly simplifying the use of de novo sequencing in proteomics. Our platform-independent software is freely available under the permissible Apache2 open source license. Source code, binaries, and additional documentation are available at http://denovogui.googlecode.com .

  13. The Feasibility of Multidimensional CFD Applied to Calandria System in the Moderator of CANDU-6 PHWR Using Commercial and Open-Source Codes

    Directory of Open Access Journals (Sweden)

    Hyoung Tae Kim

    2016-01-01

    Full Text Available The moderator system of CANDU, a prototype of PHWR (pressurized heavy-water reactor, has been modeled in multidimension for the computation based on CFD (computational fluid dynamics technique. Three CFD codes are tested in modeled hydrothermal systems of heavy-water reactors. Commercial codes, COMSOL Multiphysics and ANSYS-CFX with OpenFOAM, an open-source code, are introduced for the various simplified and practical problems. All the implemented computational codes are tested for a benchmark problem of STERN laboratory experiment with a precise modeling of tubes, compared with each other as well as the measured data and a porous model based on the experimental correlation of pressure drop. Also the effect of turbulence model is discussed for these low Reynolds number flows. As a result, they are shown to be successful for the analysis of three-dimensional numerical models related to the calandria system of CANDU reactors.

  14. Clustering impact regime with shocks in freely evolving granular gas

    Science.gov (United States)

    Isobe, Masaharu

    2017-06-01

    A freely cooling granular gas without any external force evolves from the initial homogeneous state to the inhomogeneous clustering state, at which the energy decay deviates from the Haff's law. The asymptotic behavior of energy in the inelastic hard sphere model have been predicted by several theories, which are based on the mode coupling theory or extension of inelastic hard rods gas. In this study, we revisited the clustering regime of freely evolving granular gas via large-scale molecular dynamics simulation with up to 16.7 million inelastic hard disks. We found novel regime regarding on collisions between "clusters" spontaneously appearing after clustering regime, which can only be identified more than a few million particles system. The volumetric dilatation pattern of semicircular shape originated from density shock propagation are well characterized on the appearing of "cluster impact" during the aggregation process of clusters.

  15. Freely migrating defects in ion-irradiated Cu3Au

    International Nuclear Information System (INIS)

    Wei, L.C.; Lang, E.; Flynn, C.P.; Averback, R.S.

    1999-01-01

    The efficiency of producing freely migrating vacancy defects in irradiated Cu 3 Au was examined using electrical resistivity measurements of radiation-induced ordering on highly perfect single-crystal films. Relative efficiencies for He, Ne, and Ar bombardments at different ion energy and specimen temperature were obtained. The ratio of the efficiencies of 0.6 MeV Ne to He increased with temperature from ∼0.25 at 340 K to a saturation value of ∼0.40 at 520 K. For Ar and He, the ratio increased from ∼0.11 at 360 K to ∼0.18 at 540 K. Estimates indicate that about half of all defects created in cascades are freely migrating. copyright 1999 American Institute of Physics

  16. Freely floating structures trapping time-harmonic water waves (revisited)

    OpenAIRE

    Kuznetsov, Nikolay; Motygin, Oleg

    2014-01-01

    We study the coupled small-amplitude motion of the mechanical system consisting of infinitely deep water and a structure immersed in it. The former is bounded above by a free surface, whereas the latter is formed by an arbitrary finite number of surface-piercing bodies floating freely. The mathematical model of time-harmonic motion is a spectral problem in which the frequency of oscillations serves as the spectral parameter. It is proved that there exist axisymmetric structures consisting of ...

  17. A Review of Freely Available Quantum Computer Simulation Software

    OpenAIRE

    Brandhorst-Satzkorn, Johan

    2012-01-01

    A study has been made of a few different freely available Quantum Computer simulators. All the simulators tested are available online on their respective websites. A number of tests have been performed to compare the different simulators against each other. Some untested simulators of various programming languages are included to show the diversity of the quantum computer simulator applications. The conclusion of the review is that LibQuantum is the best of the simulators tested because of ea...

  18. Soot Formation in Freely-Propagating Laminar Premixed Flames

    Science.gov (United States)

    Lin, K.-C.; Hassan, M. I.; Faeth, G. M.

    1997-01-01

    Soot formation within hydrocarbon-fueled flames is an important unresolved problem of combustion science. Thus, the present study is considering soot formation in freely-propagating laminar premixed flames, exploiting the microgravity environment to simplify measurements at the high-pressure conditions of interest for many practical applications. The findings of the investigation are relevant to reducing emissions of soot and continuum radiation from combustion processes, to improving terrestrial and spacecraft fire safety, and to developing methods of computational combustion, among others. Laminar premixed flames are attractive for studying soot formation because they are simple one-dimensional flows that are computationally tractable for detailed numerical simulations. Nevertheless, studying soot-containing burner-stabilized laminar premixed flames is problematical: spatial resolution and residence times are limited at the pressures of interest for practical applications, flame structure is sensitive to minor burner construction details so that experimental reproducibility is not very good, consistent burner behavior over the lengthy test programs needed to measure soot formation properties is hard to achieve, and burners have poor durability. Fortunately, many of these problems are mitigated for soot-containing, freely-propagating laminar premixed flames. The present investigation seeks to extend work in this laboratory for various soot processes in flames by observing soot formation in freely-propagating laminar premixed flames. Measurements are being made at both Normal Gravity (NG) and MicroGravity (MG), using a short-drop free-fall facility to provide MG conditions.

  19. OpenSWPC: an open-source integrated parallel simulation code for modeling seismic wave propagation in 3D heterogeneous viscoelastic media

    Science.gov (United States)

    Maeda, Takuto; Takemura, Shunsuke; Furumura, Takashi

    2017-07-01

    We have developed an open-source software package, Open-source Seismic Wave Propagation Code (OpenSWPC), for parallel numerical simulations of seismic wave propagation in 3D and 2D (P-SV and SH) viscoelastic media based on the finite difference method in local-to-regional scales. This code is equipped with a frequency-independent attenuation model based on the generalized Zener body and an efficient perfectly matched layer for absorbing boundary condition. A hybrid-style programming using OpenMP and the Message Passing Interface (MPI) is adopted for efficient parallel computation. OpenSWPC has wide applicability for seismological studies and great portability to allowing excellent performance from PC clusters to supercomputers. Without modifying the code, users can conduct seismic wave propagation simulations using their own velocity structure models and the necessary source representations by specifying them in an input parameter file. The code has various modes for different types of velocity structure model input and different source representations such as single force, moment tensor and plane-wave incidence, which can easily be selected via the input parameters. Widely used binary data formats, the Network Common Data Form (NetCDF) and the Seismic Analysis Code (SAC) are adopted for the input of the heterogeneous structure model and the outputs of the simulation results, so users can easily handle the input/output datasets. All codes are written in Fortran 2003 and are available with detailed documents in a public repository.[Figure not available: see fulltext.

  20. Validation of the MCNP-DSP Monte Carlo code for calculating source-driven noise parameters of subcritical systems

    International Nuclear Information System (INIS)

    Valentine, T.E.; Mihalczo, J.T.

    1995-01-01

    This paper describes calculations performed to validate the modified version of the MCNP code, the MCNP-DSP, used for: the neutron and photon spectra of the spontaneous fission of californium 252; the representation of the detection processes for scattering detectors; the timing of the detection process; and the calculation of the frequency analysis parameters for the MCNP-DSP code

  1. A new open-source pin power reconstruction capability in DRAGON5 and DONJON5 neutronic codes

    Energy Technology Data Exchange (ETDEWEB)

    Chambon, R., E-mail: richard-pierre.chambon@polymtl.ca; Hébert, A., E-mail: alain.hebert@polymtl.ca

    2015-08-15

    In order to better optimize the fuel energy efficiency in PWRs, the burnup distribution has to be known as accurately as possible, ideally in each pin. However, this level of detail is lost when core calculations are performed with homogenized cross-sections. The pin power reconstruction (PPR) method can be used to get back those levels of details as accurately as possible in a small additional computing time frame compared to classical core calculations. Such a de-homogenization technique for core calculations using arbitrarily homogenized fuel assembly geometries was presented originally by Fliscounakis et al. In our work, the same methodology was implemented in the open-source neutronic codes DRAGON5 and DONJON5. The new type of Selengut homogenization, called macro-calculation water gap, also proposed by Fliscounakis et al. was implemented. Some important details on the methodology were emphasized in order to get precise results. Validation tests were performed on 12 configurations of 3×3 clusters where simulations in transport theory and in diffusion theory followed by pin-power reconstruction were compared. The results shows that the pin power reconstruction and the Selengut macro-calculation water gap methods were correctly implemented. The accuracy of the simulations depends on the SPH method and on the homogenization geometry choices. Results show that the heterogeneous homogenization is highly recommended. SPH techniques were investigated with flux-volume and Selengut normalization, but the former leads to inaccurate results. Even though the new Selengut macro-calculation water gap method gives promising results regarding flux continuity at assembly interfaces, the classical Selengut approach is more reliable in terms of maximum and average errors in the whole range of configurations.

  2. A study on Prediction of Radioactive Source-term from the Decommissioning of Domestic NPPs by using CRUDTRAN Code

    Energy Technology Data Exchange (ETDEWEB)

    Song, Jong Soon; Lee, Sang Heon; Cho, Hoon Jo [Department of Nuclear Engineering Chosun University, Gwangju (Korea, Republic of)

    2016-10-15

    For the study, the behavior mechanism of corrosion products in the primary system of the Kori no.1 was analyzed, and the volume of activated corrosion products in the primary system was assessed based on domestic plant data with the CRUDTRAN code used to predict the volume. It is expected that the study would be utilized in predicting radiation exposure of workers performing maintenance and repairs in high radiation areas and in selecting the process of decontaminations and decommissioning in the primary system. It is also expected that in the future it would be used as the baseline data to estimate the volume of radioactive wastes when decommissioning a nuclear plant in the future, which would be an important criterion in setting the level of radioactive wastes used to compute the quantity of radioactive wastes. The results of prediction of the radioactive nuclide inventory in the primary system performed in this study would be used as baseline data for the estimation of the volume of radioactive wastes when decommissioning NPPs in the future. It is also expected that the data would be important criteria used to classify the level of radioactive wastes to calculate the volume. In addition, it is expected that the data would be utilized in reducing radiation exposure of workers in charge of system maintenance and repairing in high radiation zones and also predicting the selection of decontaminations and decommissioning processes in the primary systems. In future researches, it is planned to conduct the source term assessment against other NPP types such as CANDU and OPR-1000, in addition to the Westinghouse type nuclear plants.

  3. SFACTOR: a computer code for calculating dose equivalent to a target organ per microcurie-day residence of a radionuclide in a source organ

    International Nuclear Information System (INIS)

    Dunning, D.E. Jr.; Pleasant, J.C.; Killough, G.G.

    1977-11-01

    A computer code SFACTOR was developed to estimate the average dose equivalent S (rem/μCi-day) to each of a specified list of target organs per microcurie-day residence of a radionuclide in source organs in man. Source and target organs of interest are specified in the input data stream, along with the nuclear decay information. The SFACTOR code computes components of the dose equivalent rate from each type of decay present for a particular radionuclide, including alpha, electron, and gamma radiation. For those transuranic isotopes which also decay by spontaneous fission, components of S from the resulting fission fragments, neutrons, betas, and gammas are included in the tabulation. Tabulations of all components of S are provided for an array of 22 source organs and 24 target organs for 52 radionuclides in an adult

  4. SFACTOR: a computer code for calculating dose equivalent to a target organ per microcurie-day residence of a radionuclide in a source organ

    Energy Technology Data Exchange (ETDEWEB)

    Dunning, D.E. Jr.; Pleasant, J.C.; Killough, G.G.

    1977-11-01

    A computer code SFACTOR was developed to estimate the average dose equivalent S (rem/..mu..Ci-day) to each of a specified list of target organs per microcurie-day residence of a radionuclide in source organs in man. Source and target organs of interest are specified in the input data stream, along with the nuclear decay information. The SFACTOR code computes components of the dose equivalent rate from each type of decay present for a particular radionuclide, including alpha, electron, and gamma radiation. For those transuranic isotopes which also decay by spontaneous fission, components of S from the resulting fission fragments, neutrons, betas, and gammas are included in the tabulation. Tabulations of all components of S are provided for an array of 22 source organs and 24 target organs for 52 radionuclides in an adult.

  5. The IAEA code of conduct on the safety of radiation sources and the security of radioactive materials. A step forwards or backwards?

    International Nuclear Information System (INIS)

    Boustany, K.

    2001-01-01

    About the finalization of the Code of Conduct on the Safety and Security of radioactive Sources, it appeared that two distinct but interrelated subject areas have been identified: the prevention of accidents involving radiation sources and the prevention of theft or any other unauthorized use of radioactive materials. What analysis reveals is rather that there are gaps in both the content of the Code and the processes relating to it. Nevertheless, new standards have been introduced as a result of this exercise and have thus, as an enactment of what constitutes appropriate behaviour in the field of the safety and security of radioactive sources, emerged into the arena of international relations. (N.C.)

  6. An Assessment of Some Design Constraints on Heat Production of a 3D Conceptual EGS Model Using an Open-Source Geothermal Reservoir Simulation Code

    Energy Technology Data Exchange (ETDEWEB)

    Yidong Xia; Mitch Plummer; Robert Podgorney; Ahmad Ghassemi

    2016-02-01

    Performance of heat production process over a 30-year period is assessed in a conceptual EGS model with a geothermal gradient of 65K per km depth in the reservoir. Water is circulated through a pair of parallel wells connected by a set of single large wing fractures. The results indicate that the desirable output electric power rate and lifespan could be obtained under suitable material properties and system parameters. A sensitivity analysis on some design constraints and operation parameters indicates that 1) the fracture horizontal spacing has profound effect on the long-term performance of heat production, 2) the downward deviation angle for the parallel doublet wells may help overcome the difficulty of vertical drilling to reach a favorable production temperature, and 3) the thermal energy production rate and lifespan has close dependence on water mass flow rate. The results also indicate that the heat production can be improved when the horizontal fracture spacing, well deviation angle, and production flow rate are under reasonable conditions. To conduct the reservoir modeling and simulations, an open-source, finite element based, fully implicit, fully coupled hydrothermal code, namely FALCON, has been developed and used in this work. Compared with most other existing codes that are either closed-source or commercially available in this area, this new open-source code has demonstrated a code development strategy that aims to provide an unparalleled easiness for user-customization and multi-physics coupling. Test results have shown that the FALCON code is able to complete the long-term tests efficiently and accurately, thanks to the state-of-the-art nonlinear and linear solver algorithms implemented in the code.

  7. GANDALF - Graphical Astrophysics code for N-body Dynamics And Lagrangian Fluids

    Science.gov (United States)

    Hubber, D. A.; Rosotti, G. P.; Booth, R. A.

    2018-01-01

    GANDALF is a new hydrodynamics and N-body dynamics code designed for investigating planet formation, star formation and star cluster problems. GANDALF is written in C++, parallelized with both OPENMP and MPI and contains a PYTHON library for analysis and visualization. The code has been written with a fully object-oriented approach to easily allow user-defined implementations of physics modules or other algorithms. The code currently contains implementations of smoothed particle hydrodynamics, meshless finite-volume and collisional N-body schemes, but can easily be adapted to include additional particle schemes. We present in this paper the details of its implementation, results from the test suite, serial and parallel performance results and discuss the planned future development. The code is freely available as an open source project on the code-hosting website github at https://github.com/gandalfcode/gandalf and is available under the GPLv2 license.

  8. Spatial and temporal variations in ammonia emissions - a freely accessible model code for Europe

    DEFF Research Database (Denmark)

    Skjøth, Carsten Ambelas; Geels, Camilla; Berge, H.

    2011-01-01

    demonstrates how local climate and local management can be accounted for in CTMs by applying a modular approach for deriving data as input to a dynamic ammonia emission model for Europe. Default data are obtained from information in the RAINS system, and it is demonstrated how this dynamic emission model based......Deriving a parameterisation of ammonia emissions for use in chemistry-transport models (CTMs) is a complex problem as the emission varies locally as a result of local climate and local agricultural management. In current CTMs such factors are generally not taken into account. This paper...... on these input data improves the NH3 calculations in a CTM model when the results are compared with calculations obtained by traditional methods in emission handling. It is also shown how input data can be modified over a specific target region resulting in even further improvement in performance over...

  9. Vector Network Coding

    OpenAIRE

    Ebrahimi, Javad; Fragouli, Christina

    2010-01-01

    We develop new algebraic algorithms for scalar and vector network coding. In vector network coding, the source multicasts information by transmitting vectors of length L, while intermediate nodes process and combine their incoming packets by multiplying them with L X L coding matrices that play a similar role as coding coefficients in scalar coding. Our algorithms for scalar network jointly optimize the employed field size while selecting the coding coefficients. Similarly, for vector co...

  10. Vibration transmission characteristics of the legs of freely standing honeybees

    DEFF Research Database (Denmark)

    Rohrseitz, Kristin; Kilpinen, Ole

    1997-01-01

    as the stimulator. This was also the case in freely standing honeybees, except around 400 Hz, where an average attenuation of approximately 6 dB was observed. In the fixed bee preparation, the vertical movements of the legs were also measured during horizontal stimulation. The vertical vibration amplitude...... of the legs was 15-20 dB lower than the horizontal stimulation amplitude. The electrophysiologically and behaviourally determined thresholds for vibration stimulation increased by approximately 10 dB, when the stimulus direction was changed from vertical to horizontal. These observations support the notion...

  11. Evaluation of the methodology for dose calculation in microdosimetry with electrons sources using the MCNP5 Code

    International Nuclear Information System (INIS)

    Cintra, Felipe Belonsi de

    2010-01-01

    This study made a comparison between some of the major transport codes that employ the Monte Carlo stochastic approach in dosimetric calculations in nuclear medicine. We analyzed in detail the various physical and numerical models used by MCNP5 code in relation with codes like EGS and Penelope. The identification of its potential and limitations for solving microdosimetry problems were highlighted. The condensed history methodology used by MCNP resulted in lower values for energy deposition calculation. This showed a known feature of the condensed stories: its underestimates both the number of collisions along the trajectory of the electron and the number of secondary particles created. The use of transport codes like MCNP and Penelope for micrometer scales received special attention in this work. Class I and class II codes were studied and their main resources were exploited in order to transport electrons, which have particular importance in dosimetry. It is expected that the evaluation of available methodologies mentioned here contribute to a better understanding of the behavior of these codes, especially for this class of problems, common in microdosimetry. (author)

  12. Validation of the Open Source Code_Aster Software Used in the Modal Analysis of the Fluid-filled Cylindrical Shell

    Directory of Open Access Journals (Sweden)

    B D. Kashfutdinov

    2017-01-01

    Full Text Available The paper deals with a modal analysis of the elastic cylindrical shell with a clamped bottom partially filled with fluid in open source Code_Aster software using the finite element method. Natural frequencies and modes obtained in Code_Aster are compared to experimental and theoretical data. The aim of this paper is to prove that Code_Aster has all necessary tools for solving fluid structure interaction problems. Also, Code_Aster can be used in the industrial projects as an alternative to commercial software. The available free pre- and post-processors with a graphical user interface that is compatible with Code_Aster allow creating complex models and processing the results.The paper presents new validation results of open source Code_Aster software used to calculate small natural modes of the cylindrical shell partially filled with non-viscous compressible barotropic fluid under gravity field.The displacement of the middle surface of thin shell and the displacement of the fluid relative to the equilibrium position are described by coupled hydro-elasticity problem. The fluid flow is considered to be potential. The finite element method (FEM is used. The features of computational model are described. The resolution equation has symmetrical block matrices. To compare the results, is discussed the well-known modal analysis problem of cylindrical shell with flat non-deformable bottom, filled with a compressible fluid. The numerical parameters of the scheme were chosen in accordance with well-known experimental and analytical data. Three cases were taken into account: an empty, a partially filled and a full-filled cylindrical shell.The frequencies of Code_Aster are in good agreement with those, obtained in experiment, analytical solution, as well as with results obtained by FEM in other software. The difference between experiment and analytical solution in software is approximately the same. The obtained results extend a set of validation tests for

  13. UNIX code management and distribution

    International Nuclear Information System (INIS)

    Hung, T.; Kunz, P.F.

    1992-09-01

    We describe a code management and distribution system based on tools freely available for the UNIX systems. At the master site, version control is managed with CVS, which is a layer on top of RCS, and distribution is done via NFS mounted file systems. At remote sites, small modifications to CVS provide for interactive transactions with the CVS system at the master site such that remote developers are true peers in the code development process

  14. Freely-migrating-defect production during irradiation at elevated temperatures

    Science.gov (United States)

    Hashimoto, T.; Rehn, L. E.; Okamoto, P. R.

    1988-12-01

    Radiation-induced segregation in a Cu-1 at. % Au alloy was investigated using in situ Rutherford backscattering spectrometry. The amount of Au atom depletion in the near surface region was measured as a function of dose during irradiation at 350 °C with four ions of substantially different masses. Relative efficiencies for producing freely migrating defects were evaluated for 1.8-MeV 1H, 4He, 20Ne, and 84Kr ions by determining beam current densities that gave similar radiation-induced segregation rates. Irradiations with primary knock-on atom median energies of 1.7, 13, and 79 keV yielded relative efficiencies of 53, 7, and 6 %, respectively, compared to the irradiation with a 0.83-keV median energy. Despite quite different defect and host alloy properties, the relative efficiencies for producing freely migrating defects determined in Cu-Au are remarkably similar to those found previously in Ni-Si alloys. Hence, the reported efficiencies appear to offer a reliable basis for making quantitative correlations of microstructural changes induced in different alloy systems by a wide variety of irradiation particles.

  15. Freely accessible water does not decrease consumption of ethanol liquid diets.

    Science.gov (United States)

    de Fiebre, NancyEllen C; de Fiebre, Christopher M

    2003-02-01

    In experimental studies, liquid ethanol diets are usually given as the sole source of nutrition and fluid. Two series of experiments were conducted to examine the effect of freely accessible water on the consumption of ethanol liquid diets in male Long-Evans rats. The consumption of diets and subsequent learning ability of rats were first examined in animals given twice-daily saline injections. One group received diet with no access to water for 12 weeks and was subsequently given free access to water with diets for an additional 12 weeks. A second group was given diet and water ad libitum for 24 weeks. Control animals received an isocaloric sucrose-containing diet (with or without ad libitum access to water). Subsequently, rats were tested for active avoidance learning. In the first 12 weeks, animals with ad libitum access to water drank more diet than did water-restricted animals, and previously water-restricted animals increased their diet consumption when access to water was freely available. All water-restricted animals, in both ethanol- and sucrose-treated groups, showed deficits in active avoidance learning, whereas only ethanol-treated animals in groups with ad libitum access to water showed learning deficits. In the second series of experiments, the effect of saline injections on diet consumption, both in the presence and absence of water, was examined. Although saline injections were associated with decreased diet consumption, there was no effect of free access to water. No differences in blood ethanol concentration were seen among groups. Findings obtained from both series of studies demonstrate that consumption of a Sustacal-based liquid ethanol diet does not decrease if access to water is freely available.

  16. Matlab Source Code for Species Transport through Nafion Membranes in Direct Ethanol, Direct Methanol, and Direct Glucose Fuel Cells

    OpenAIRE

    JH, Summerfield; MW, Manley

    2016-01-01

    A simple simulation of chemical species movement is presented. The species traverse a Nafion membrane in a fuel cell. Three cells are examined: direct methanol, direct ethanol, and direct glucose. The species are tracked using excess proton concentration, electric field strength, and voltage. The Matlab computer code is provided.

  17. Study of cold neutron sources: Implementation and validation of a complete computation scheme for research reactor using Monte Carlo codes TRIPOLI-4.4 and McStas

    International Nuclear Information System (INIS)

    Campioni, Guillaume; Mounier, Claude

    2006-01-01

    The main goal of the thesis about studies of cold neutrons sources (CNS) in research reactors was to create a complete set of tools to design efficiently CNS. The work raises the problem to run accurate simulations of experimental devices inside reactor reflector valid for parametric studies. On one hand, deterministic codes have reasonable computation times but introduce problems for geometrical description. On the other hand, Monte Carlo codes give the possibility to compute on precise geometry, but need computation times so important that parametric studies are impossible. To decrease this computation time, several developments were made in the Monte Carlo code TRIPOLI-4.4. An uncoupling technique is used to isolate a study zone in the complete reactor geometry. By recording boundary conditions (incoming flux), further simulations can be launched for parametric studies with a computation time reduced by a factor 60 (case of the cold neutron source of the Orphee reactor). The short response time allows to lead parametric studies using Monte Carlo code. Moreover, using biasing methods, the flux can be recorded on the surface of neutrons guides entries (low solid angle) with a further gain of running time. Finally, the implementation of a coupling module between TRIPOLI- 4.4 and the Monte Carlo code McStas for research in condensed matter field gives the possibility to obtain fluxes after transmission through neutrons guides, thus to have the neutron flux received by samples studied by scientists of condensed matter. This set of developments, involving TRIPOLI-4.4 and McStas, represent a complete computation scheme for research reactors: from nuclear core, where neutrons are created, to the exit of neutrons guides, on samples of matter. This complete calculation scheme is tested against ILL4 measurements of flux in cold neutron guides. (authors)

  18. ECG-ViEW II, a freely accessible electrocardiogram database

    Science.gov (United States)

    Park, Man Young; Lee, Sukhoon; Jeon, Min Seok; Yoon, Dukyong; Park, Rae Woong

    2017-01-01

    The Electrocardiogram Vigilance with Electronic data Warehouse II (ECG-ViEW II) is a large, single-center database comprising numeric parameter data of the surface electrocardiograms of all patients who underwent testing from 1 June 1994 to 31 July 2013. The electrocardiographic data include the test date, clinical department, RR interval, PR interval, QRS duration, QT interval, QTc interval, P axis, QRS axis, and T axis. These data are connected with patient age, sex, ethnicity, comorbidities, age-adjusted Charlson comorbidity index, prescribed drugs, and electrolyte levels. This longitudinal observational database contains 979,273 electrocardiograms from 461,178 patients over a 19-year study period. This database can provide an opportunity to study electrocardiographic changes caused by medications, disease, or other demographic variables. ECG-ViEW II is freely available at http://www.ecgview.org. PMID:28437484

  19. Flutter instability of freely hanging articulated pipes conveying fluid

    Science.gov (United States)

    Schouveiler, Lionel; Chermette, Félix

    2018-03-01

    We experimentally investigate the stability of freely hanging articulated pipes made of rigid segments connected by flexible joints and with their displacements constrained in a vertical plane. When the velocity of the fluid conveyed by the pipe is increased, flutter-type instability occurs above a critical value. The critical velocity and the characteristics of the flutter modes (frequency, amplitude, and shape) are determined as a function of the number n of segments into the pipe which is varied from 2 to 5. Experimental results are compared to predictions from linear stability analysis extending previous studies by taking into account damping due to the dissipation in the joints. Qualitative agreement is found and the limits of the analysis are discussed.

  20. Freely chosen cadence during a covert manipulation of ambient temperature.

    Science.gov (United States)

    Hartley, Geoffrey L; Cheung, Stephen S

    2013-01-01

    The present study investigated relationships between changes in power output (PO) to torque (TOR) or freely chosen cadence (FCC) during thermal loading. Twenty participants cycled at a constant rating of perceived exertion while ambient temperature (Ta) was covertly manipulated at 20-min intervals of 20 °C, 35 °C, and 20 °C. The magnitude responses of PO, FCC and TOR were analyzed using repeated-measures ANOVA, while the temporal correlations were analyzed using Auto-Regressive Integrated Moving Averages (ARIMA). Increases in Ta caused significant thermal strain (p FCC remained unchanged (p = .51). ARIMA indicates that changes in PO were highly correlated to TOR (stationary r2 = .954, p = .04), while FCC was moderately correlated (stationary r2 = .717, p = .01) to PO. In conclusion, changes in PO are caused by a modulation in TOR, whereas FCC remains unchanged and therefore, unaffected by thermal stressors.

  1. Proof of Concept Coded Aperture Miniature Mass Spectrometer Using a Cycloidal Sector Mass Analyzer, a Carbon Nanotube (CNT) Field Emission Electron Ionization Source, and an Array Detector

    Science.gov (United States)

    Amsden, Jason J.; Herr, Philip J.; Landry, David M. W.; Kim, William; Vyas, Raul; Parker, Charles B.; Kirley, Matthew P.; Keil, Adam D.; Gilchrist, Kristin H.; Radauscher, Erich J.; Hall, Stephen D.; Carlson, James B.; Baldasaro, Nicholas; Stokes, David; Di Dona, Shane T.; Russell, Zachary E.; Grego, Sonia; Edwards, Steven J.; Sperline, Roger P.; Denton, M. Bonner; Stoner, Brian R.; Gehm, Michael E.; Glass, Jeffrey T.

    2018-02-01

    Despite many potential applications, miniature mass spectrometers have had limited adoption in the field due to the tradeoff between throughput and resolution that limits their performance relative to laboratory instruments. Recently, a solution to this tradeoff has been demonstrated by using spatially coded apertures in magnetic sector mass spectrometers, enabling throughput and signal-to-background improvements of greater than an order of magnitude with no loss of resolution. This paper describes a proof of concept demonstration of a cycloidal coded aperture miniature mass spectrometer (C-CAMMS) demonstrating use of spatially coded apertures in a cycloidal sector mass analyzer for the first time. C-CAMMS also incorporates a miniature carbon nanotube (CNT) field emission electron ionization source and a capacitive transimpedance amplifier (CTIA) ion array detector. Results confirm the cycloidal mass analyzer's compatibility with aperture coding. A >10× increase in throughput was achieved without loss of resolution compared with a single slit instrument. Several areas where additional improvement can be realized are identified.

  2. A Mode Propagation Database Suitable for Code Validation Utilizing the NASA Glenn Advanced Noise Control Fan and Artificial Sources

    Science.gov (United States)

    Sutliff, Daniel L.

    2014-01-01

    The NASA Glenn Research Center's Advanced Noise Control Fan (ANCF) was developed in the early 1990s to provide a convenient test bed to measure and understand fan-generated acoustics, duct propagation, and radiation to the farfield. A series of tests were performed primarily for the use of code validation and tool validation. Rotating Rake mode measurements were acquired for parametric sets of: (i) mode blockage, (ii) liner insertion loss, (iii) short ducts, and (iv) mode reflection.

  3. MPEG-compliant joint source/channel coding using discrete cosine transform and substream scheduling for visual communication over packet networks

    Science.gov (United States)

    Kim, Seong-Whan; Suthaharan, Shan; Lee, Heung-Kyu; Rao, K. R.

    2001-01-01

    Quality of Service (QoS)-guarantee in real-time communication for multimedia applications is significantly important. An architectural framework for multimedia networks based on substreams or flows is effectively exploited for combining source and channel coding for multimedia data. But the existing frame by frame approach which includes Moving Pictures Expert Group (MPEG) cannot be neglected because it is a standard. In this paper, first, we designed an MPEG transcoder which converts an MPEG coded stream into variable rate packet sequences to be used for our joint source/channel coding (JSCC) scheme. Second, we designed a classification scheme to partition the packet stream into multiple substreams which have their own QoS requirements. Finally, we designed a management (reservation and scheduling) scheme for substreams to support better perceptual video quality such as the bound of end-to-end jitter. We have shown that our JSCC scheme is better than two other two popular techniques by simulation and real video experiments on the TCP/IP environment.

  4. Investigation of some possible changes in Am-Be neutron source configuration in order to increase the thermal neutron flux using Monte Carlo code

    Science.gov (United States)

    Basiri, H.; Tavakoli-Anbaran, H.

    2018-01-01

    Am-Be neutrons source is based on (α, n) reaction and generates neutrons in the energy range of 0-11 MeV. Since the thermal neutrons are widely used in different fields, in this work, we investigate how to improve the source configuration in order to increase the thermal flux. These suggested changes include a spherical moderator instead of common cylindrical geometry, a reflector layer and an appropriate materials selection in order to achieve the maximum thermal flux. All calculations were done by using MCNP1 Monte Carlo code. Our final results indicated that a spherical paraffin moderator, a layer of beryllium as a reflector can efficiently increase the thermal neutron flux of Am-Be source.

  5. An improvement of estimation method of source term to the environment for interfacing system LOCA for typical PWR using MELCOR code

    Energy Technology Data Exchange (ETDEWEB)

    Han, Seok Jung; Kim, Tae Woon; Ahn, Kwang Il [Risk and Environmental Safety Research Division, Korea Atomic Energy Research Institute, Daejeon (Korea, Republic of)

    2017-06-15

    Interfacing-system loss-of-coolant-accident (ISLOCA) has been identified as the most hazardous accident scenario in the typical PWR plants. The present study as an effort to improve the knowledge of the source term to the environment during ISLOCA focuses on an improvement of the estimation method. The improvement was performed to take into account an effect of broken pipeline and auxiliary building structures relevant to ISLOCA. An estimation of the source term to the environment was for the OPR-1000 plants by MELOCR code version 1.8.6. The key features of the source term showed that the massive amount of fission products departed from the beginning of core degradation to the vessel breach. The release amount of fission products may be affected by the broken pipeline and the auxiliary building structure associated with release pathway.

  6. A study on the application of CRUDTRAN code in primary systems of domestic pressurized heavy-water reactors for prediction of radiation source term

    Energy Technology Data Exchange (ETDEWEB)

    Song, Jong Soon; Cho, Hoon Jo; Jung, Min Young; Lee, Sang Heon [Dept. of Nuclear Engineering, Chosun University, Gwangju (Korea, Republic of)

    2017-04-15

    The importance of developing a source-term assessment technology has been emphasized owing to the decommissioning of Kori nuclear power plant (NPP) Unit 1 and the increase of deteriorated NPPs. We analyzed the behavioral mechanism of corrosion products in the primary system of a pressurized heavy-water reactor-type NPP. In addition, to check the possibility of applying the CRUDTRAN code to a Canadian Deuterium Uranium Reactor (CANDU)-type NPP, the type was assessed using collected domestic onsite data. With the assessment results, it was possible to predict trends according to operating cycles. Values estimated using the code were similar to the measured values. The results of this study are expected to be used to manage the radiation exposures of operators in high-radiation areas and to predict decommissioning processes in the primary system.

  7. Calculations of fuel burn-up and radionuclide inventory in the syrian miniature neutron source reactor using the WIMSD4 code

    International Nuclear Information System (INIS)

    Khattab, K.

    2005-01-01

    Calculations of the fuel burn up and radionuclide inventory in the Miniature Neutron Source Reactor after 10 years (the reactor core expected life) of the reactor operating time are presented in this paper. The WIMSD4 code is used to generate the fuel group constants and the infinite multiplication factor versus the reactor operating time for 10, 20, and 30 kW operating power levels. The amounts of uranium burnt up and plutonium produced in the reactor core, the concentrations and radioactivities of the most important fission product and actinide radionuclides accumulated in the reactor core, and the total radioactivity of the reactor core are calculated using the WIMSD4 code as well

  8. European inter-comparison of Monte Carlo codes users for the uncertainty calculation of the kerma in air beside a caesium-137 source; Intercomparaison europeenne d'utilisateurs de codes monte carlo pour le calcul d'incertitudes sur le kerma dans l'air aupres d'une source de cesium-137

    Energy Technology Data Exchange (ETDEWEB)

    De Carlan, L.; Bordy, J.M.; Gouriou, J. [CEA Saclay, LIST, Laboratoire National Henri Becquerel, Laboratoire de Metrologie de la Dose 91 - Gif-sur-Yvette (France)

    2010-07-01

    Within the frame of the CONRAD European project (Coordination Network for Radiation Dosimetry), and more precisely within a work group paying attention to uncertainty assessment in computational dosimetry and aiming at comparing different approaches, the authors report the simulation of an irradiator containing a caesium 137 source to calculate the kerma in air as well as its uncertainty due to different parameters. They present the problem geometry, recall the studied issues (kerma uncertainty, influence of capsule source, influence of the collimator, influence of the air volume surrounding the source). They indicate the codes which have been used (MNCP, Fluka, Penelope, etc.) and discuss the obtained results for the first issue

  9. TU-AB-BRC-10: Modeling of Radiotherapy Linac Source Terms Using ARCHER Monte Carlo Code: Performance Comparison of GPU and MIC Computing Accelerators

    International Nuclear Information System (INIS)

    Liu, T; Lin, H; Xu, X; Su, L; Shi, C; Tang, X; Bednarz, B

    2016-01-01

    Purpose: (1) To perform phase space (PS) based source modeling for Tomotherapy and Varian TrueBeam 6 MV Linacs, (2) to examine the accuracy and performance of the ARCHER Monte Carlo code on a heterogeneous computing platform with Many Integrated Core coprocessors (MIC, aka Xeon Phi) and GPUs, and (3) to explore the software micro-optimization methods. Methods: The patient-specific source of Tomotherapy and Varian TrueBeam Linacs was modeled using the PS approach. For the helical Tomotherapy case, the PS data were calculated in our previous study (Su et al. 2014 41(7) Medical Physics). For the single-view Varian TrueBeam case, we analytically derived them from the raw patient-independent PS data in IAEA’s database, partial geometry information of the jaw and MLC as well as the fluence map. The phantom was generated from DICOM images. The Monte Carlo simulation was performed by ARCHER-MIC and GPU codes, which were benchmarked against a modified parallel DPM code. Software micro-optimization was systematically conducted, and was focused on SIMD vectorization of tight for-loops and data prefetch, with the ultimate goal of increasing 512-bit register utilization and reducing memory access latency. Results: Dose calculation was performed for two clinical cases, a Tomotherapy-based prostate cancer treatment and a TrueBeam-based left breast treatment. ARCHER was verified against the DPM code. The statistical uncertainty of the dose to the PTV was less than 1%. Using double-precision, the total wall time of the multithreaded CPU code on a X5650 CPU was 339 seconds for the Tomotherapy case and 131 seconds for the TrueBeam, while on 3 5110P MICs it was reduced to 79 and 59 seconds, respectively. The single-precision GPU code on a K40 GPU took 45 seconds for the Tomotherapy dose calculation. Conclusion: We have extended ARCHER, the MIC and GPU-based Monte Carlo dose engine to Tomotherapy and Truebeam dose calculations.

  10. TU-AB-BRC-10: Modeling of Radiotherapy Linac Source Terms Using ARCHER Monte Carlo Code: Performance Comparison of GPU and MIC Computing Accelerators

    Energy Technology Data Exchange (ETDEWEB)

    Liu, T; Lin, H; Xu, X [Rensselaer Polytechnic Institute, Troy, NY (United States); Su, L [John Hopkins University, Baltimore, MD (United States); Shi, C [Saint Vincent Medical Center, Bridgeport, CT (United States); Tang, X [Memorial Sloan Kettering Cancer Center, West Harrison, NY (United States); Bednarz, B [University of Wisconsin, Madison, WI (United States)

    2016-06-15

    Purpose: (1) To perform phase space (PS) based source modeling for Tomotherapy and Varian TrueBeam 6 MV Linacs, (2) to examine the accuracy and performance of the ARCHER Monte Carlo code on a heterogeneous computing platform with Many Integrated Core coprocessors (MIC, aka Xeon Phi) and GPUs, and (3) to explore the software micro-optimization methods. Methods: The patient-specific source of Tomotherapy and Varian TrueBeam Linacs was modeled using the PS approach. For the helical Tomotherapy case, the PS data were calculated in our previous study (Su et al. 2014 41(7) Medical Physics). For the single-view Varian TrueBeam case, we analytically derived them from the raw patient-independent PS data in IAEA’s database, partial geometry information of the jaw and MLC as well as the fluence map. The phantom was generated from DICOM images. The Monte Carlo simulation was performed by ARCHER-MIC and GPU codes, which were benchmarked against a modified parallel DPM code. Software micro-optimization was systematically conducted, and was focused on SIMD vectorization of tight for-loops and data prefetch, with the ultimate goal of increasing 512-bit register utilization and reducing memory access latency. Results: Dose calculation was performed for two clinical cases, a Tomotherapy-based prostate cancer treatment and a TrueBeam-based left breast treatment. ARCHER was verified against the DPM code. The statistical uncertainty of the dose to the PTV was less than 1%. Using double-precision, the total wall time of the multithreaded CPU code on a X5650 CPU was 339 seconds for the Tomotherapy case and 131 seconds for the TrueBeam, while on 3 5110P MICs it was reduced to 79 and 59 seconds, respectively. The single-precision GPU code on a K40 GPU took 45 seconds for the Tomotherapy dose calculation. Conclusion: We have extended ARCHER, the MIC and GPU-based Monte Carlo dose engine to Tomotherapy and Truebeam dose calculations.

  11. OFF, Open source Finite volume Fluid dynamics code: A free, high-order solver based on parallel, modular, object-oriented Fortran API

    Science.gov (United States)

    Zaghi, S.

    2014-07-01

    OFF, an open source (free software) code for performing fluid dynamics simulations, is presented. The aim of OFF is to solve, numerically, the unsteady (and steady) compressible Navier-Stokes equations of fluid dynamics by means of finite volume techniques: the research background is mainly focused on high-order (WENO) schemes for multi-fluids, multi-phase flows over complex geometries. To this purpose a highly modular, object-oriented application program interface (API) has been developed. In particular, the concepts of data encapsulation and inheritance available within Fortran language (from standard 2003) have been stressed in order to represent each fluid dynamics "entity" (e.g. the conservative variables of a finite volume, its geometry, etc…) by a single object so that a large variety of computational libraries can be easily (and efficiently) developed upon these objects. The main features of OFF can be summarized as follows: Programming LanguageOFF is written in standard (compliant) Fortran 2003; its design is highly modular in order to enhance simplicity of use and maintenance without compromising the efficiency; Parallel Frameworks Supported the development of OFF has been also targeted to maximize the computational efficiency: the code is designed to run on shared-memory multi-cores workstations and distributed-memory clusters of shared-memory nodes (supercomputers); the code's parallelization is based on Open Multiprocessing (OpenMP) and Message Passing Interface (MPI) paradigms; Usability, Maintenance and Enhancement in order to improve the usability, maintenance and enhancement of the code also the documentation has been carefully taken into account; the documentation is built upon comprehensive comments placed directly into the source files (no external documentation files needed): these comments are parsed by means of doxygen free software producing high quality html and latex documentation pages; the distributed versioning system referred as git

  12. Dosimetric comparison between the microSelectron HDR 192Ir v2 source and the BEBIG 60Co source for HDR brachytherapy using the EGSnrc Monte Carlo transport code

    International Nuclear Information System (INIS)

    Anwarul Islam, M.; Akramuzzaman, M.M.; Zakaria, G.A.

    2012-01-01

    Manufacturing of miniaturized high activity 192 Ir sources have been made a market preference in modern brachytherapy. The smaller dimensions of the sources are flexible for smaller diameter of the applicators and it is also suitable for interstitial implants. Presently, miniaturized 60 Co HDR sources have been made available with identical dimensions to those of 192 Ir sources. 60 Co sources have an advantage of longer half life while comparing with 192 Ir source. High dose rate brachytherapy sources with longer half life are logically pragmatic solution for developing country in economic point of view. This study is aimed to compare the TG-43U1 dosimetric parameters for new BEBIG 60 Co HDR and new microSelectron 192 Ir HDR sources. Dosimetric parameters are calculated using EGSnrc-based Monte Carlo simulation code accordance with the AAPM TG-43 formalism for microSelectron HDR 192 Ir v2 and new BEBIG 60 Co HDR sources. Air-kerma strength per unit source activity, calculated in dry air are 9.698x10 -8 ± 0.55% U Bq -1 and 3.039x10 -7 ± 0.41% U Bq -1 for the above mentioned two sources, respectively. The calculated dose rate constants per unit air-kerma strength in water medium are 1.116±0.12% cGy h -1 U -1 and 1.097±0.12% cGy h -1 U -1 , respectively, for the two sources. The values of radial dose function for distances up to 1 cm and more than 22 cm for BEBIG 60 Co HDR source are higher than that of other source. The anisotropic values are sharply increased to the longitudinal sides of the BEBIG 60 Co source and the rise is comparatively sharper than that of the other source. Tissue dependence of the absorbed dose has been investigated with vacuum phantom for breast, compact bone, blood, lung, thyroid, soft tissue, testis, and muscle. No significant variation is noted at 5 cm of radial distance in this regard while comparing the two sources except for lung tissues. The true dose rates are calculated with considering photon as well as electron transport using

  13. Mobile, hybrid Compton/coded aperture imaging for detection, identification and localization of gamma-ray sources at stand-off distances

    Science.gov (United States)

    Tornga, Shawn R.

    The Stand-off Radiation Detection System (SORDS) program is an Advanced Technology Demonstration (ATD) project through the Department of Homeland Security's Domestic Nuclear Detection Office (DNDO) with the goal of detection, identification and localization of weak radiological sources in the presence of large dynamic backgrounds. The Raytheon-SORDS Tri-Modal Imager (TMI) is a mobile truck-based, hybrid gamma-ray imaging system able to quickly detect, identify and localize, radiation sources at standoff distances through improved sensitivity while minimizing the false alarm rate. Reconstruction of gamma-ray sources is performed using a combination of two imaging modalities; coded aperture and Compton scatter imaging. The TMI consists of 35 sodium iodide (NaI) crystals 5x5x2 in3 each, arranged in a random coded aperture mask array (CA), followed by 30 position sensitive NaI bars each 24x2.5x3 in3 called the detection array (DA). The CA array acts as both a coded aperture mask and scattering detector for Compton events. The large-area DA array acts as a collection detector for both Compton scattered events and coded aperture events. In this thesis, developed coded aperture, Compton and hybrid imaging algorithms will be described along with their performance. It will be shown that multiple imaging modalities can be fused to improve detection sensitivity over a broader energy range than either alone. Since the TMI is a moving system, peripheral data, such as a Global Positioning System (GPS) and Inertial Navigation System (INS) must also be incorporated. A method of adapting static imaging algorithms to a moving platform has been developed. Also, algorithms were developed in parallel with detector hardware, through the use of extensive simulations performed with the Geometry and Tracking Toolkit v4 (GEANT4). Simulations have been well validated against measured data. Results of image reconstruction algorithms at various speeds and distances will be presented as well as

  14. Open source tools and toolkits for bioinformatics: significance, and where are we?

    Science.gov (United States)

    Stajich, Jason E; Lapp, Hilmar

    2006-09-01

    This review summarizes important work in open-source bioinformatics software that has occurred over the past couple of years. The survey is intended to illustrate how programs and toolkits whose source code has been developed or released under an Open Source license have changed informatics-heavy areas of life science research. Rather than creating a comprehensive list of all tools developed over the last 2-3 years, we use a few selected projects encompassing toolkit libraries, analysis tools, data analysis environments and interoperability standards to show how freely available and modifiable open-source software can serve as the foundation for building important applications, analysis workflows and resources.

  15. One-electron densities of freely rotating Wigner molecules

    Science.gov (United States)

    Cioslowski, Jerzy

    2017-12-01

    A formalism enabling computation of the one-particle density of a freely rotating assembly of identical particles that vibrate about their equilibrium positions with amplitudes much smaller than their average distances is presented. It produces densities as finite sums of products of angular and radial functions, the length of the expansion being determined by the interplay between the point-group and permutational symmetries of the system in question. Obtaining from a convolution of the rotational and bosonic components of the parent wavefunction, the angular functions are state-dependent. On the other hand, the radial functions are Gaussians with maxima located at the equilibrium lengths of the position vectors of individual particles and exponents depending on the scalar products of these vectors and the eigenvectors of the corresponding Hessian as well as the respective eigenvalues. Although the new formalism is particularly useful for studies of the Wigner molecules formed by electrons subject to weak confining potentials, it is readily adaptable to species (such as ´balliums’ and Coulomb crystals) composed of identical particles with arbitrary spin statistics and permutational symmetry. Several examples of applications of the present approach to the harmonium atoms within the strong-correlation regime are given.

  16. Automatic Moving Object Segmentation for Freely Moving Cameras

    Directory of Open Access Journals (Sweden)

    Yanli Wan

    2014-01-01

    Full Text Available This paper proposes a new moving object segmentation algorithm for freely moving cameras which is very common for the outdoor surveillance system, the car build-in surveillance system, and the robot navigation system. A two-layer based affine transformation model optimization method is proposed for camera compensation purpose, where the outer layer iteration is used to filter the non-background feature points, and the inner layer iteration is used to estimate a refined affine model based on the RANSAC method. Then the feature points are classified into foreground and background according to the detected motion information. A geodesic based graph cut algorithm is then employed to extract the moving foreground based on the classified features. Unlike the existing global optimization or the long term feature point tracking based method, our algorithm only performs on two successive frames to segment the moving foreground, which makes it suitable for the online video processing applications. The experiment results demonstrate the effectiveness of our algorithm in both of the high accuracy and the fast speed.

  17. A contribution to the analysis of the activity distribution of a radioactive source trapped inside a cylindrical volume, using the M.C.N.P.X. code

    International Nuclear Information System (INIS)

    Portugal, L.; Oliveira, C.; Trindade, R.; Paiva, I.

    2006-01-01

    Orphan sources, activated materials or contaminated materials with natural or artificial radionuclides have been detected in scrap metal products destined to recycling. The consequences of the melting of a source during the process could result in economical, environmental and social impacts. From the point of view of the radioactive waste management, a scenario of 100 ton of contaminated steel in one piece is a major problem. So, it is of great importance to develop a methodology that would allow us to predict the activity distribution inside a volume of steel. In previous work we were able to distinguish between the cases where the source is disseminated all over the entire cylinder and the cases where it is concentrated in different volumes. Now the main goal is to distinguish between different radiuses of spherical source geometries trapped inside the cylinder. For this, a methodology was proposed based on the ratio of the counts of two regions of the gamma spectrum, obtained with a sodium iodide detector, using the M.C.N.P.X. Monte Carlo simulation code. These calculated ratios allow us to determine a function r = aR 2 + bR + c, where R is the ratio between the counts of the two regions of the gamma spectrum and r is the radius of the source. For simulation purposes six 60 Co sources were used (a point source, four spheres of 5 cm, 10 cm, 15 cm and 20 cm radius and the overall contaminated cylinder) trapped inside two types of matrix, concrete and stainless steel. The methodology applied has shown to predict and distinguish accurately the distribution of a source inside a material roughly independently of the matrix and density considered. (authors)

  18. A contribution to the analysis of the activity distribution of a radioactive source trapped inside a cylindrical volume, using the M.C.N.P.X. code

    Energy Technology Data Exchange (ETDEWEB)

    Portugal, L.; Oliveira, C.; Trindade, R.; Paiva, I. [Instituto Tecnologico e Nuclear, Dpto. Proteccao Radiologica e Seguranca Nuclear, Sacavem (Portugal)

    2006-07-01

    Orphan sources, activated materials or contaminated materials with natural or artificial radionuclides have been detected in scrap metal products destined to recycling. The consequences of the melting of a source during the process could result in economical, environmental and social impacts. From the point of view of the radioactive waste management, a scenario of 100 ton of contaminated steel in one piece is a major problem. So, it is of great importance to develop a methodology that would allow us to predict the activity distribution inside a volume of steel. In previous work we were able to distinguish between the cases where the source is disseminated all over the entire cylinder and the cases where it is concentrated in different volumes. Now the main goal is to distinguish between different radiuses of spherical source geometries trapped inside the cylinder. For this, a methodology was proposed based on the ratio of the counts of two regions of the gamma spectrum, obtained with a sodium iodide detector, using the M.C.N.P.X. Monte Carlo simulation code. These calculated ratios allow us to determine a function r = aR{sup 2} + bR + c, where R is the ratio between the counts of the two regions of the gamma spectrum and r is the radius of the source. For simulation purposes six {sup 60}Co sources were used (a point source, four spheres of 5 cm, 10 cm, 15 cm and 20 cm radius and the overall contaminated cylinder) trapped inside two types of matrix, concrete and stainless steel. The methodology applied has shown to predict and distinguish accurately the distribution of a source inside a material roughly independently of the matrix and density considered. (authors)

  19. Modeling of Radiotherapy Linac Source Terms Using ARCHER Monte Carlo Code: Performance Comparison for GPU and MIC Parallel Computing Devices

    Science.gov (United States)

    Lin, Hui; Liu, Tianyu; Su, Lin; Bednarz, Bryan; Caracappa, Peter; Xu, X. George

    2017-09-01

    Monte Carlo (MC) simulation is well recognized as the most accurate method for radiation dose calculations. For radiotherapy applications, accurate modelling of the source term, i.e. the clinical linear accelerator is critical to the simulation. The purpose of this paper is to perform source modelling and examine the accuracy and performance of the models on Intel Many Integrated Core coprocessors (aka Xeon Phi) and Nvidia GPU using ARCHER and explore the potential optimization methods. Phase Space-based source modelling for has been implemented. Good agreements were found in a tomotherapy prostate patient case and a TrueBeam breast case. From the aspect of performance, the whole simulation for prostate plan and breast plan cost about 173s and 73s with 1% statistical error.

  20. Modeling of Radiotherapy Linac Source Terms Using ARCHER Monte Carlo Code: Performance Comparison for GPU and MIC Parallel Computing Devices

    Directory of Open Access Journals (Sweden)

    Lin Hui

    2017-01-01

    Full Text Available Monte Carlo (MC simulation is well recognized as the most accurate method for radiation dose calculations. For radiotherapy applications, accurate modelling of the source term, i.e. the clinical linear accelerator is critical to the simulation. The purpose of this paper is to perform source modelling and examine the accuracy and performance of the models on Intel Many Integrated Core coprocessors (aka Xeon Phi and Nvidia GPU using ARCHER and explore the potential optimization methods. Phase Space-based source modelling for has been implemented. Good agreements were found in a tomotherapy prostate patient case and a TrueBeam breast case. From the aspect of performance, the whole simulation for prostate plan and breast plan cost about 173s and 73s with 1% statistical error.

  1. Parallelization of the AliRoot event reconstruction by performing a semi- automatic source-code transformation

    CERN Multimedia

    CERN. Geneva

    2012-01-01

    side bus or processor interconnections. Parallelism can only result in performance gain, if the memory usage is optimized, memory locality improved and the communication between threads is minimized. But the domain of concurrent programming has become a field for highly skilled experts, as the implementation of multithreading is difficult, error prone and labor intensive. A full re-implementation for parallel execution of existing offline frameworks, like AliRoot in ALICE, is thus unaffordable. An alternative method, is to use a semi-automatic source-to-source transformation for getting a simple parallel design, with almost no interference between threads. This reduces the need of rewriting the develop...

  2. A study of physics of sub-critical multiplicative systems driven by sources and the utilization of deterministic codes in calculation of this systems

    International Nuclear Information System (INIS)

    Antunes, Alberi

    2008-01-01

    This work presents the Physics of Source Driven Systems (ADS). It shows some statics and K i netics parameters of the reactor Physics and when it is sub critical, that are important in evaluation and definition of these systems. The objective is to demonstrate that there are differences in parameters when the reactor is critical. Moreover, the work shows the differences observed in the parameters for different calculation models. Two calculation methodologies are shown In this dissertation: Gandini and Salvatores and Dulla, and some parameters are calculated. The ANISN deterministic transport code is used in calculation in order to compare these parameters. In a subcritical configuration of IPEN-MB-01 Reactor driven by an external source some parameters are calculated. The conclusions about calculation realized are presented in end of work. (author)

  3. Calculation of gamma ray dose buildup factors in water for isotropic point, plane mono directional and line sources using MCNP code

    International Nuclear Information System (INIS)

    Atak, H.; Celikten, O. S.; Tombakoglu, M.

    2009-01-01

    Gamma ray dose buildup factors in water for isotropic point, plane mono directional and infinite/finite line sources were calculated using the MCNP code. The buildup factors are determined for gamma ray energies of 1, 2, 3 and 4 Mev and for shield thicknesses of 1, 2, 4 and 7 mean free paths. The calculated buildup factors were then fitted in the Taylor and Berger forms. For the line sources a buildup factor table was also constructed using the Sievert function and the constants in Taylor form derived in this study to compare with the Monte Carlo results. All buildup factors were compared with the tabulated data given in literature. In order to reduce the statistical errors on buildup factors, 'forced collision' option was used in the MCNP calculations.

  4. Source convergence diagnostics using Boltzmann entropy criterion application to different OECD/NEA criticality benchmarks with the 3-D Monte Carlo code Tripoli-4

    International Nuclear Information System (INIS)

    Dumonteil, E.; Le Peillet, A.; Lee, Y. K.; Petit, O.; Jouanne, C.; Mazzolo, A.

    2006-01-01

    The measurement of the stationarity of Monte Carlo fission source distributions in k eff calculations plays a central role in the ability to discriminate between fake and 'true' convergence (in the case of a high dominant ratio or in case of loosely coupled systems). Recent theoretical developments have been made in the study of source convergence diagnostics, using Shannon entropy. We will first recall those results, and we will then generalize them using the expression of Boltzmann entropy, highlighting the gain in terms of the various physical problems that we can treat. Finally we will present the results of several OECD/NEA benchmarks using the Tripoli-4 Monte Carlo code, enhanced with this new criterion. (authors)

  5. The ZPIC educational code suite

    Science.gov (United States)

    Calado, R.; Pardal, M.; Ninhos, P.; Helm, A.; Mori, W. B.; Decyk, V. K.; Vieira, J.; Silva, L. O.; Fonseca, R. A.

    2017-10-01

    Particle-in-Cell (PIC) codes are used in almost all areas of plasma physics, such as fusion energy research, plasma accelerators, space physics, ion propulsion, and plasma processing, and many other areas. In this work, we present the ZPIC educational code suite, a new initiative to foster training in plasma physics using computer simulations. Leveraging on our expertise and experience from the development and use of the OSIRIS PIC code, we have developed a suite of 1D/2D fully relativistic electromagnetic PIC codes, as well as 1D electrostatic. These codes are self-contained and require only a standard laptop/desktop computer with a C compiler to be run. The output files are written in a new file format called ZDF that can be easily read using the supplied routines in a number of languages, such as Python, and IDL. The code suite also includes a number of example problems that can be used to illustrate several textbook and advanced plasma mechanisms, including instructions for parameter space exploration. We also invite contributions to this repository of test problems that will be made freely available to the community provided the input files comply with the format defined by the ZPIC team. The code suite is freely available and hosted on GitHub at https://github.com/zambzamb/zpic. Work partially supported by PICKSC.

  6. Two-dimensional model of a freely expanding plasma

    International Nuclear Information System (INIS)

    Khalid, Q.

    1975-01-01

    The free expansion of an initially confined plasma is studied by the computer experiment technique. The research is an extension to two dimensions of earlier work on the free expansion of a collisionless plasma in one dimension. In the two-dimensional rod model, developed in this research, the plasma particles, electrons and ions are modeled as infinitely long line charges or rods. The line charges move freely in two dimensions normal to their parallel axes, subject only to a self-consistent electric field. Two approximations, the grid approximation and the periodic boundary condition are made in order to reduce the computation time. In the grid approximation, the space occupied by the plasma at a given time is divided into boxes. The particles are subject to an average electric field calculated for that box assuming that the total charge within each box is located at the center of the box. However, the motion of each particle is exactly followed. The periodic boundary condition allows us to consider only one-fourth of the total number of particles of the plasma, representing the remaining three-fourths of the particles as symmetrically placed images of those whose positions are calculated. This approximation follows from the expected azimuthal symmetry of the plasma. The dynamics of the expansion are analyzed in terms of average ion and electron positions, average velocities, oscillation frequencies and relative distribution of energy between thermal, flow and electric field energies. Comparison is made with previous calculations of one-dimensional models which employed plane, spherical or cylindrical sheets as charged particles. In order to analyze the effect of the grid approximation, the model is solved for two different grid sizes and for each grid size the plasma dynamics is determined. For the initial phase of expansion, the agreement for the two grid sizes is found to be good

  7. Transmission from theory to practice: Experiences using open-source code development and a virtual short course to increase the adoption of new theoretical approaches

    Science.gov (United States)

    Harman, C. J.

    2015-12-01

    Even amongst the academic community, new theoretical tools can remain underutilized due to the investment of time and resources required to understand and implement them. This surely limits the frequency that new theory is rigorously tested against data by scientists outside the group that developed it, and limits the impact that new tools could have on the advancement of science. Reducing the barriers to adoption through online education and open-source code can bridge the gap between theory and data, forging new collaborations, and advancing science. A pilot venture aimed at increasing the adoption of a new theory of time-variable transit time distributions was begun in July 2015 as a collaboration between Johns Hopkins University and The Consortium of Universities for the Advancement of Hydrologic Science (CUAHSI). There were four main components to the venture: a public online seminar covering the theory, an open source code repository, a virtual short course designed to help participants apply the theory to their data, and an online forum to maintain discussion and build a community of users. 18 participants were selected for the non-public components based on their responses in an application, and were asked to fill out a course evaluation at the end of the short course, and again several months later. These evaluations, along with participation in the forum and on-going contact with the organizer suggest strengths and weaknesses in this combination of components to assist participants in adopting new tools.

  8. SCRIC: a code dedicated to the detailed emission and absorption of heterogeneous NLTE plasmas; application to xenon EUV sources; SCRIC: un code pour calculer l'absorption et l'emission detaillees de plasmas hors equilibre, inhomogenes et etendus; application aux sources EUV a base de xenon

    Energy Technology Data Exchange (ETDEWEB)

    Gaufridy de Dortan, F. de

    2006-07-01

    Nearly all spectral opacity codes for LTE and NLTE plasmas rely on configurations approximate modelling or even supra-configurations modelling for mid Z plasmas. But in some cases, configurations interaction (either relativistic and non relativistic) induces dramatic changes in spectral shapes. We propose here a new detailed emissivity code with configuration mixing to allow for a realistic description of complex mid Z plasmas. A collisional radiative calculation. based on HULLAC precise energies and cross sections. determines the populations. Detailed emissivities and opacities are then calculated and radiative transfer equation is resolved for wide inhomogeneous plasmas. This code is able to cope rapidly with very large amount of atomic data. It is therefore possible to use complex hydrodynamic files even on personal computers in a very limited time. We used this code for comparison with Xenon EUV sources within the framework of nano-lithography developments. It appears that configurations mixing strongly shifts satellite lines and must be included in the description of these sources to enhance their efficiency. (author)

  9. Code Cactus; Code Cactus

    Energy Technology Data Exchange (ETDEWEB)

    Fajeau, M; Nguyen, L T; Saunier, J [Commissariat a l' Energie Atomique, Centre d' Etudes Nucleaires de Saclay, 91 - Gif-sur-Yvette (France)

    1966-09-01

    This code handles the following problems: -1) Analysis of thermal experiments on a water loop at high or low pressure; steady state or transient behavior; -2) Analysis of thermal and hydrodynamic behavior of water-cooled and moderated reactors, at either high or low pressure, with boiling permitted; fuel elements are assumed to be flat plates: - Flowrate in parallel channels coupled or not by conduction across plates, with conditions of pressure drops or flowrate, variable or not with respect to time is given; the power can be coupled to reactor kinetics calculation or supplied by the code user. The code, containing a schematic representation of safety rod behavior, is a one dimensional, multi-channel code, and has as its complement (FLID), a one-channel, two-dimensional code. (authors) [French] Ce code permet de traiter les problemes ci-dessous: 1. Depouillement d'essais thermiques sur boucle a eau, haute ou basse pression, en regime permanent ou transitoire; 2. Etudes thermiques et hydrauliques de reacteurs a eau, a plaques, a haute ou basse pression, ebullition permise: - repartition entre canaux paralleles, couples on non par conduction a travers plaques, pour des conditions de debit ou de pertes de charge imposees, variables ou non dans le temps; - la puissance peut etre couplee a la neutronique et une representation schematique des actions de securite est prevue. Ce code (Cactus) a une dimension d'espace et plusieurs canaux, a pour complement Flid qui traite l'etude d'un seul canal a deux dimensions. (auteurs)

  10. The materiality of Code

    DEFF Research Database (Denmark)

    Soon, Winnie

    2014-01-01

    This essay studies the source code of an artwork from a software studies perspective. By examining code that come close to the approach of critical code studies (Marino, 2006), I trace the network artwork, Pupufu (Lin, 2009) to understand various real-time approaches to social media platforms (MSN......, Twitter and Facebook). The focus is not to investigate the functionalities and efficiencies of the code, but to study and interpret the program level of code in order to trace the use of various technological methods such as third-party libraries and platforms’ interfaces. These are important...... to understand the socio-technical side of a changing network environment. Through the study of code, including but not limited to source code, technical specifications and other materials in relation to the artwork production, I would like to explore the materiality of code that goes beyond technical...

  11. Sources

    International Nuclear Information System (INIS)

    Duffy, L.P.

    1991-01-01

    This paper discusses the sources of radiation in the narrow perspective of radioactivity and the even narrow perspective of those sources that concern environmental management and restoration activities at DOE facilities, as well as a few related sources. Sources of irritation, Sources of inflammatory jingoism, and Sources of information. First, the sources of irritation fall into three categories: No reliable scientific ombudsman to speak without bias and prejudice for the public good, Technical jargon with unclear definitions exists within the radioactive nomenclature, and Scientific community keeps a low-profile with regard to public information. The next area of personal concern are the sources of inflammation. This include such things as: Plutonium being described as the most dangerous substance known to man, The amount of plutonium required to make a bomb, Talk of transuranic waste containing plutonium and its health affects, TMI-2 and Chernobyl being described as Siamese twins, Inadequate information on low-level disposal sites and current regulatory requirements under 10 CFR 61, Enhanced engineered waste disposal not being presented to the public accurately. Numerous sources of disinformation regarding low level radiation high-level radiation, Elusive nature of the scientific community, The Federal and State Health Agencies resources to address comparative risk, and Regulatory agencies speaking out without the support of the scientific community

  12. Head-mounted LED for optogenetic experiments of freely-behaving animal

    Science.gov (United States)

    Kwon, Ki Yong; Gnade, Andrew G.; Rush, Alexander D.; Patten, Craig D.

    2016-03-01

    Recent developments in optogenetics have demonstrated the ability to target specific types of neurons with sub-millisecond temporal precision via direct optical stimulation of genetically modified neurons in the brain. In most applications, the beam of a laser is coupled to an optical fiber, which guides and delivers the optical power to the region of interest. Light emitting diodes (LEDs) are an alternative light source for optogenetics and they provide many advantages over a laser based system including cost, size, illumination stability, and fast modulation. Their compact size and low power consumption make LEDs suitable light sources for a wireless optogenetic stimulation system. However, the coupling efficiency of an LED's output light into an optical fiber is lower than a laser due to its noncollimated output light. In typical chronic optogenetic experiment, the output of the light source is transmitted to the brain through a patch cable and a fiber stub implant, and this configuration requires two fiber-to-fiber couplings. Attenuation within the patch cable is potential source of optical power loss. In this study, we report and characterize a recently developed light delivery method for freely-behaving animal experiments. We have developed a head-mounted light source that maximizes the coupling efficiency of an LED light source by eliminating the need for a fiber optic cable. This miniaturized LED is designed to couple directly to the fiber stub implant. Depending on the desired optical power output, the head-mounted LED can be controlled by either a tethered (high power) or battery-powered wireless (moderate power) controller. In the tethered system, the LED is controlled through 40 gauge micro coaxial cable which is thinner, more flexible, and more durable than a fiber optic cable. The battery-powered wireless system uses either infrared or radio frequency transmission to achieve real-time control. Optical, electrical, mechanical, and thermal

  13. The IPEM code of practice for determination of the reference air kerma rate for HDR 192Ir brachytherapy sources based on the NPL air kerma standard

    International Nuclear Information System (INIS)

    Bidmead, A M; Sander, T; Nutbrown, R F; Locks, S M; Lee, C D; Aird, E G A; Flynn, A

    2010-01-01

    This paper contains the recommendations of the high dose rate (HDR) brachytherapy working party of the UK Institute of Physics and Engineering in Medicine (IPEM). The recommendations consist of a Code of Practice (COP) for the UK for measuring the reference air kerma rate (RAKR) of HDR 192 Ir brachytherapy sources. In 2004, the National Physical Laboratory (NPL) commissioned a primary standard for the realization of RAKR of HDR 192 Ir brachytherapy sources. This has meant that it is now possible to calibrate ionization chambers directly traceable to an air kerma standard using an 192 Ir source (Sander and Nutbrown 2006 NPL Report DQL-RD 004 (Teddington: NPL) http://publications.npl.co.uk). In order to use the source specification in terms of either RAKR, .K R (ICRU 1985 ICRU Report No 38 (Washington, DC: ICRU); ICRU 1997 ICRU Report No 58 (Bethesda, MD: ICRU)), or air kerma strength, S K (Nath et al 1995 Med. Phys. 22 209-34), it has been necessary to develop algorithms that can calculate the dose at any point around brachytherapy sources within the patient tissues. The AAPM TG-43 protocol (Nath et al 1995 Med. Phys. 22 209-34) and the 2004 update TG-43U1 (Rivard et al 2004 Med. Phys. 31 633-74) have been developed more fully than any other protocol and are widely used in commercial treatment planning systems. Since the TG-43 formalism uses the quantity air kerma strength, whereas this COP uses RAKR, a unit conversion from RAKR to air kerma strength was included in the appendix to this COP. It is recommended that the measured RAKR determined with a calibrated well chamber traceable to the NPL 192 Ir primary standard is used in the treatment planning system. The measurement uncertainty in the source calibration based on the system described in this COP has been reduced considerably compared to other methods based on interpolation techniques.

  14. XSOR codes users manual

    International Nuclear Information System (INIS)

    Jow, Hong-Nian; Murfin, W.B.; Johnson, J.D.

    1993-11-01

    This report describes the source term estimation codes, XSORs. The codes are written for three pressurized water reactors (Surry, Sequoyah, and Zion) and two boiling water reactors (Peach Bottom and Grand Gulf). The ensemble of codes has been named ''XSOR''. The purpose of XSOR codes is to estimate the source terms which would be released to the atmosphere in severe accidents. A source term includes the release fractions of several radionuclide groups, the timing and duration of releases, the rates of energy release, and the elevation of releases. The codes have been developed by Sandia National Laboratories for the US Nuclear Regulatory Commission (NRC) in support of the NUREG-1150 program. The XSOR codes are fast running parametric codes and are used as surrogates for detailed mechanistic codes. The XSOR codes also provide the capability to explore the phenomena and their uncertainty which are not currently modeled by the mechanistic codes. The uncertainty distributions of input parameters may be used by an. XSOR code to estimate the uncertainty of source terms

  15. ANT: Software for Generating and Evaluating Degenerate Codons for Natural and Expanded Genetic Codes.

    Science.gov (United States)

    Engqvist, Martin K M; Nielsen, Jens

    2015-08-21

    The Ambiguous Nucleotide Tool (ANT) is a desktop application that generates and evaluates degenerate codons. Degenerate codons are used to represent DNA positions that have multiple possible nucleotide alternatives. This is useful for protein engineering and directed evolution, where primers specified with degenerate codons are used as a basis for generating libraries of protein sequences. ANT is intuitive and can be used in a graphical user interface or by interacting with the code through a defined application programming interface. ANT comes with full support for nonstandard, user-defined, or expanded genetic codes (translation tables), which is important because synthetic biology is being applied to an ever widening range of natural and engineered organisms. The Python source code for ANT is freely distributed so that it may be used without restriction, modified, and incorporated in other software or custom data pipelines.

  16. SU-E-T-212: Comparison of TG-43 Dosimetric Parameters of Low and High Energy Brachytherapy Sources Obtained by MCNP Code Versions of 4C, X and 5

    Energy Technology Data Exchange (ETDEWEB)

    Zehtabian, M; Zaker, N; Sina, S [Shiraz University, Shiraz, Fars (Iran, Islamic Republic of); Meigooni, A Soleimani [Comprehensive Cancer Center of Nevada, Las Vegas, Nevada (United States)

    2015-06-15

    Purpose: Different versions of MCNP code are widely used for dosimetry purposes. The purpose of this study is to compare different versions of the MCNP codes in dosimetric evaluation of different brachytherapy sources. Methods: The TG-43 parameters such as dose rate constant, radial dose function, and anisotropy function of different brachytherapy sources, i.e. Pd-103, I-125, Ir-192, and Cs-137 were calculated in water phantom. The results obtained by three versions of Monte Carlo codes (MCNP4C, MCNPX, MCNP5) were compared for low and high energy brachytherapy sources. Then the cross section library of MCNP4C code was changed to ENDF/B-VI release 8 which is used in MCNP5 and MCNPX codes. Finally, the TG-43 parameters obtained using the MCNP4C-revised code, were compared with other codes. Results: The results of these investigations indicate that for high energy sources, the differences in TG-43 parameters between the codes are less than 1% for Ir-192 and less than 0.5% for Cs-137. However for low energy sources like I-125 and Pd-103, large discrepancies are observed in the g(r) values obtained by MCNP4C and the two other codes. The differences between g(r) values calculated using MCNP4C and MCNP5 at the distance of 6cm were found to be about 17% and 28% for I-125 and Pd-103 respectively. The results obtained with MCNP4C-revised and MCNPX were similar. However, the maximum difference between the results obtained with the MCNP5 and MCNP4C-revised codes was 2% at 6cm. Conclusion: The results indicate that using MCNP4C code for dosimetry of low energy brachytherapy sources can cause large errors in the results. Therefore it is recommended not to use this code for low energy sources, unless its cross section library is changed. Since the results obtained with MCNP4C-revised and MCNPX were similar, it is concluded that the difference between MCNP4C and MCNPX is their cross section libraries.

  17. sources

    Directory of Open Access Journals (Sweden)

    Shu-Yin Chiang

    2002-01-01

    Full Text Available In this paper, we study the simplified models of the ATM (Asynchronous Transfer Mode multiplexer network with Bernoulli random traffic sources. Based on the model, the performance measures are analyzed by the different output service schemes.

  18. Development of Level-2 PSA Technology: A Development of the Database of the Parametric Source Term for Kori Unit 1 Using the MAAP4 Code

    Energy Technology Data Exchange (ETDEWEB)

    Kang, Chang Soon; Mun, Ju Hyun; Yun, Jeong Ick; Cho, Young Hoo; Kim, Chong Uk [Seoul National University, Seoul (Korea, Republic of)

    1997-07-15

    To quantify the severe accident source term of the parametric model method, the uncertainty of the parameters should be analyzed. Generally, to analyze the uncertainties, the cumulative distribution functions(CDF`S) of the parameters are derived. This report introduces a method of derivation of the CDF`s of the basic parameters, FCOR, FVES and FDCH. The calculation tool of the source term is the MAAP version 4.0. In the MAAP code, there are model parameters to consider an uncertain physical and/or chemical phenomenon. In general, the parameters have not a point value but a range. In this paper, considering this point, the input values of model parameters influencing each parameter are sampled using LHS. Then, the calculation results are shown in the cumulative distribution form. For a case study, the CDF`s of FCOR, FVES and FDCH of KORI unit 1 are derived. The target scenarios for the calculation are the ones whose initial events are large LOCA, small LOCA and transient, respectively. It is found that the distributions of this study are consistent to those of NUREG-1150 and are proven to be adequate in assessing the uncertainties in the severe accident source term of KORI Unit 1. 15 refs., 27 tabs., 4 figs. (author)

  19. Computer code determination of tolerable accel current and voltage limits during startup of an 80 kV MFTF sustaining neutral beam source

    International Nuclear Information System (INIS)

    Mayhall, D.J.; Eckard, R.D.

    1979-01-01

    We have used a Lawrence Livermore Laboratory (LLL) version of the WOLF ion source extractor design computer code to determine tolerable accel current and voltage limits during startup of a prototype 80 kV Mirror Fusion Test Facility (MFTF) sustaining neutral beam source. Arc current limits are also estimated. The source extractor has gaps of 0.236, 0.721, and 0.155 cm. The effective ion mass is 2.77 AMU. The measured optimum accel current density is 0.266 A/cm 2 . The gradient grid electrode runs at 5/6 V/sub a/ (accel voltage). The suppressor electrode voltage is zero for V/sub a/ < 3 kV and -3 kV for V/sub a/ greater than or equal to 3 kV. The accel current density for optimum beam divergence is obtained for 1 less than or equal to V/sub a/ less than or equal to 80 kV, as are the beam divergence and emittance

  20. CONTAIN code calculations of the effects on the source term of CsI to I/sub 2/ conversion due to severe hydrogen burns

    International Nuclear Information System (INIS)

    Valdez, G.D.; Williams, D.C.

    1986-01-01

    In experiments conducted at Sandia National Laboratories large amounts of elemental iodine were produced when CsI-Al 2 O 3 aerosol was exposed to hydrogen/air combustion. To evaluate some of the implications of the iodide conversion (observed to occur with up to 75% efficiency) for the severe accident source term, computational simulations of representative accident sequences were conducted with the CONTAIN code. The following conclusions can be drawn from this preliminary source term assessment: (1) If the containment sprays are inoperative during the accident, or failed by the hydrogen burn, the late-time source term is almost tripled when the iodide is converted to I 2 . (2) With the sprays active, the amount released without conversion of the CsI aerosol is 63% higher than for the case when conversion occurs. (3) For the case where CsI is converted to I 2 continued operation of the sprays reduces the release by a factor of 40, relative to the case in which the sprays fail at the time of the hydrogen burn. When there is no conversion, the reduction factor for continued spray operation is about a factor of 9, relative to the failed spray case

  1. SFACTOR: a computer code for calculating dose equivalent to a target organ per microcurie-day residence of a radionuclide in a source organ - supplementary report

    Energy Technology Data Exchange (ETDEWEB)

    Dunning, Jr, D E; Pleasant, J C; Killough, G G

    1980-05-01

    The purpose of this report is to describe revisions in the SFACTOR computer code and to provide useful documentation for that program. The SFACTOR computer code has been developed to implement current methodologies for computing the average dose equivalent rate S(X reverse arrow Y) to specified target organs in man due to 1 ..mu..Ci of a given radionuclide uniformly distributed in designated source orrgans. The SFACTOR methodology is largely based upon that of Snyder, however, it has been expanded to include components of S from alpha and spontaneous fission decay, in addition to electron and photon radiations. With this methodology, S-factors can be computed for any radionuclide for which decay data are available. The tabulations in Appendix II provide a reference compilation of S-factors for several dosimetrically important radionuclides which are not available elsewhere in the literature. These S-factors are calculated for an adult with characteristics similar to those of the International Commission on Radiological Protection's Reference Man. Corrections to tabulations from Dunning are presented in Appendix III, based upon the methods described in Section 2.3. 10 refs.

  2. Generation of point isotropic source dose buildup factor data for the PFBR special concretes in a form compatible for usage in point kernel computer code QAD-CGGP

    International Nuclear Information System (INIS)

    Radhakrishnan, G.

    2003-01-01

    Full text: Around the PFBR (Prototype Fast Breeder Reactor) reactor assembly, in the peripheral shields special concretes of density 2.4 g/cm 3 and 3.6 g/cm 3 are to be used in complex geometrical shapes. Point-kernel computer code like QAD-CGGP, written for complex shield geometry comes in handy for the shield design optimization of peripheral shields. QAD-CGGP requires data base for the buildup factor data and it contains only ordinary concrete of density 2.3 g/cm 3 . In order to extend the data base for the PFBR special concretes, point isotropic source dose buildup factors have been generated by Monte Carlo method using the computer code MCNP-4A. For the above mentioned special concretes, buildup factor data have been generated in the energy range 0.5 MeV to 10.0 MeV with the thickness ranging from 1 mean free paths (mfp) to 40 mfp. Capo's formula fit of the buildup factor data compatible with QAD-CGGP has been attempted

  3. Calculations of the thermal and fast neutron fluxes in the Syrian miniature neutron source reactor using the MCNP-4C code.

    Science.gov (United States)

    Khattab, K; Sulieman, I

    2009-04-01

    The MCNP-4C code, based on the probabilistic approach, was used to model the 3D configuration of the core of the Syrian miniature neutron source reactor (MNSR). The continuous energy neutron cross sections from the ENDF/B-VI library were used to calculate the thermal and fast neutron fluxes in the inner and outer irradiation sites of MNSR. The thermal fluxes in the MNSR inner irradiation sites were also measured experimentally by the multiple foil activation method ((197)Au (n, gamma) (198)Au and (59)Co (n, gamma) (60)Co). The foils were irradiated simultaneously in each of the five MNSR inner irradiation sites to measure the thermal neutron flux and the epithermal index in each site. The calculated and measured results agree well.

  4. Space and Terrestrial Power System Integration Optimization Code BRMAPS for Gas Turbine Space Power Plants With Nuclear Reactor Heat Sources

    Science.gov (United States)

    Juhasz, Albert J.

    2007-01-01

    In view of the difficult times the US and global economies are experiencing today, funds for the development of advanced fission reactors nuclear power systems for space propulsion and planetary surface applications are currently not available. However, according to the Energy Policy Act of 2005 the U.S. needs to invest in developing fission reactor technology for ground based terrestrial power plants. Such plants would make a significant contribution toward drastic reduction of worldwide greenhouse gas emissions and associated global warming. To accomplish this goal the Next Generation Nuclear Plant Project (NGNP) has been established by DOE under the Generation IV Nuclear Systems Initiative. Idaho National Laboratory (INL) was designated as the lead in the development of VHTR (Very High Temperature Reactor) and HTGR (High Temperature Gas Reactor) technology to be integrated with MMW (multi-megawatt) helium gas turbine driven electric power AC generators. However, the advantages of transmitting power in high voltage DC form over large distances are also explored in the seminar lecture series. As an attractive alternate heat source the Liquid Fluoride Reactor (LFR), pioneered at ORNL (Oak Ridge National Laboratory) in the mid 1960's, would offer much higher energy yields than current nuclear plants by using an inherently safe energy conversion scheme based on the Thorium --> U233 fuel cycle and a fission process with a negative temperature coefficient of reactivity. The power plants are to be sized to meet electric power demand during peak periods and also for providing thermal energy for hydrogen (H2) production during "off peak" periods. This approach will both supply electric power by using environmentally clean nuclear heat which does not generate green house gases, and also provide a clean fuel H2 for the future, when, due to increased global demand and the decline in discovering new deposits, our supply of liquid fossil fuels will have been used up. This is

  5. French-speaking Children's Freely Produced Labels for Facial Expressions

    Directory of Open Access Journals (Sweden)

    Reem eMaassarani

    2014-06-01

    Full Text Available In this study, we investigated the labeling of facial expressions in French-speaking children. The participants were 137 French-speaking children, between the ages of 5 and 11 years, recruited from three elementary schools in Ottawa, Ontario, Canada. The facial expressions included expressions of happiness, sadness, fear, surprise, anger, and disgust. Participants were shown one facial expression at a time, and asked to say what the stimulus person was feeling. Participants’ responses were coded by two raters who made judgments concerning the specific emotion category in which the responses belonged. Five- and 6-year-olds were quite accurate in labeling facial expressions of happiness, anger, and sadness but far less accurate for facial expressions of fear, surprise, and disgust. An improvement in accuracy as a function of age was found for fear and surprise only. Labeling facial expressions of disgust proved to be very difficult for the children, even for the 11-year-olds. In order to examine the fit between the model proposed by Widen and Russell (2003 and our data, we looked at the number of participants who had the predicted response patterns. Overall, 88.52% of the participants did. Most of the participants used between 3 and 5 labels, with correspondence percentages varying between 80.00% and 100.00%. Our results suggest that the model proposed by Widen and Russell is not limited to English-speaking children, but also accounts for the sequence of emotion labeling in French-Canadian children.

  6. 3D-e-Chem-VM: Structural Cheminformatics Research Infrastructure in a Freely Available Virtual Machine.

    Science.gov (United States)

    McGuire, Ross; Verhoeven, Stefan; Vass, Márton; Vriend, Gerrit; de Esch, Iwan J P; Lusher, Scott J; Leurs, Rob; Ridder, Lars; Kooistra, Albert J; Ritschel, Tina; de Graaf, Chris

    2017-02-27

    3D-e-Chem-VM is an open source, freely available Virtual Machine ( http://3d-e-chem.github.io/3D-e-Chem-VM/ ) that integrates cheminformatics and bioinformatics tools for the analysis of protein-ligand interaction data. 3D-e-Chem-VM consists of software libraries, and database and workflow tools that can analyze and combine small molecule and protein structural information in a graphical programming environment. New chemical and biological data analytics tools and workflows have been developed for the efficient exploitation of structural and pharmacological protein-ligand interaction data from proteomewide databases (e.g., ChEMBLdb and PDB), as well as customized information systems focused on, e.g., G protein-coupled receptors (GPCRdb) and protein kinases (KLIFS). The integrated structural cheminformatics research infrastructure compiled in the 3D-e-Chem-VM enables the design of new approaches in virtual ligand screening (Chemdb4VS), ligand-based metabolism prediction (SyGMa), and structure-based protein binding site comparison and bioisosteric replacement for ligand design (KRIPOdb).

  7. Evaluation of the scale dependent dynamic SGS model in the open source code caffa3d.MBRi in wall-bounded flows

    Science.gov (United States)

    Draper, Martin; Usera, Gabriel

    2015-04-01

    The Scale Dependent Dynamic Model (SDDM) has been widely validated in large-eddy simulations using pseudo-spectral codes [1][2][3]. The scale dependency, particularly the potential law, has been proved also in a priori studies [4][5]. To the authors' knowledge there have been only few attempts to use the SDDM in finite difference (FD) and finite volume (FV) codes [6][7], finding some improvements with the dynamic procedures (scale independent or scale dependent approach), but not showing the behavior of the scale-dependence parameter when using the SDDM. The aim of the present paper is to evaluate the SDDM in the open source code caffa3d.MBRi, an updated version of the code presented in [8]. caffa3d.MBRi is a FV code, second-order accurate, parallelized with MPI, in which the domain is divided in unstructured blocks of structured grids. To accomplish this, 2 cases are considered: flow between flat plates and flow over a rough surface with the presence of a model wind turbine, taking for this case the experimental data presented in [9]. In both cases the standard Smagorinsky Model (SM), the Scale Independent Dynamic Model (SIDM) and the SDDM are tested. As presented in [6][7] slight improvements are obtained with the SDDM. Nevertheless, the behavior of the scale-dependence parameter supports the generalization of the dynamic procedure proposed in the SDDM, particularly taking into account that no explicit filter is used (the implicit filter is unknown). [1] F. Porté-Agel, C. Meneveau, M.B. Parlange. "A scale-dependent dynamic model for large-eddy simulation: application to a neutral atmospheric boundary layer". Journal of Fluid Mechanics, 2000, 415, 261-284. [2] E. Bou-Zeid, C. Meneveau, M. Parlante. "A scale-dependent Lagrangian dynamic model for large eddy simulation of complex turbulent flows". Physics of Fluids, 2005, 17, 025105 (18p). [3] R. Stoll, F. Porté-Agel. "Dynamic subgrid-scale models for momentum and scalar fluxes in large-eddy simulations of

  8. Simultaneous measurement of surface tension and viscosity using freely decaying oscillations of acoustically levitated droplets

    Science.gov (United States)

    Kremer, J.; Kilzer, A.; Petermann, M.

    2018-01-01

    Oscillations of small liquid drops around a spherical shape have been of great interest to scientists measuring physical properties such as interfacial tension and viscosity, over the last few decades. A powerful tool for contactless positioning is acoustic levitation, which has been used to simultaneously determine the surface tension and viscosity of liquids at ambient pressure. In order to extend this acoustic levitation measurement method to high pressure systems, the method is first evaluated under ambient pressure. To measure surface tension and viscosity using acoustically levitated oscillating drops, an image analysis method has to be developed and factors which may affect measurement, such as sound field or oscillation amplitude, have to be analyzed. In this paper, we describe the simultaneous measurement of surface tension and viscosity using freely decaying shape oscillations of acoustically levitated droplets of different liquids (silicone oils AK 5 and AK 10, squalane, 1-propanol, 1-butanol, 1-pentanol, 1-hexanol, 1-heptanol, and 1-octanol) in air. These liquids vary in viscosity from 2 to about 30 mPa s. An acoustic levitation system, including an optimized standing wave acoustic levitator and a high-speed camera, was used for this study. An image analysis was performed with a self-written Matlab® code. The frequency of oscillation and the damping constant, required for the determination of surface tension and viscosity, respectively, were calculated from the evolution of the equatorial and polar radii. The results and observations are compared to data from the literature in order to analyze the accuracy of surface tension and viscosity determination, as well as the effect of non-spherical drop shape or amplitude of oscillation on measurement.

  9. LIGHT CURVES OF CORE-COLLAPSE SUPERNOVAE WITH SUBSTANTIAL MASS LOSS USING THE NEW OPEN-SOURCE SUPERNOVA EXPLOSION CODE (SNEC)

    International Nuclear Information System (INIS)

    Morozova, Viktoriya; Renzo, Mathieu; Ott, Christian D.; Clausen, Drew; Couch, Sean M.; Ellis, Justin; Roberts, Luke F.; Piro, Anthony L.

    2015-01-01

    We present the SuperNova Explosion Code (SNEC), an open-source Lagrangian code for the hydrodynamics and equilibrium-diffusion radiation transport in the expanding envelopes of supernovae. Given a model of a progenitor star, an explosion energy, and an amount and distribution of radioactive nickel, SNEC generates the bolometric light curve, as well as the light curves in different broad bands assuming blackbody emission. As a first application of SNEC, we consider the explosions of a grid of 15 M ⊙ (at zero-age main sequence, ZAMS) stars whose hydrogen envelopes are stripped to different extents and at different points in their evolution. The resulting light curves exhibit plateaus with durations of ∼20–100 days if ≳1.5–2 M ⊙ of hydrogen-rich material is left and no plateau if less hydrogen-rich material is left. If these shorter plateau lengths are not seen for SNe IIP in nature, it suggests that, at least for ZAMS masses ≲20 M ⊙ , hydrogen mass loss occurs as an all or nothing process. This perhaps points to the important role binary interactions play in generating the observed mass-stripped supernovae (i.e., Type Ib/c events). These light curves are also unlike what is typically seen for SNe IIL, arguing that simply varying the amount of mass loss cannot explain these events. The most stripped models begin to show double-peaked light curves similar to what is often seen for SNe IIb, confirming previous work that these supernovae can come from progenitors that have a small amount of hydrogen and a radius of ∼500 R ⊙

  10. LIGHT CURVES OF CORE-COLLAPSE SUPERNOVAE WITH SUBSTANTIAL MASS LOSS USING THE NEW OPEN-SOURCE SUPERNOVA EXPLOSION CODE (SNEC)

    Energy Technology Data Exchange (ETDEWEB)

    Morozova, Viktoriya; Renzo, Mathieu; Ott, Christian D.; Clausen, Drew; Couch, Sean M.; Ellis, Justin; Roberts, Luke F. [TAPIR, Walter Burke Institute for Theoretical Physics, MC 350-17, California Institute of Technology, Pasadena, CA 91125 (United States); Piro, Anthony L., E-mail: morozvs@tapir.caltech.edu [Carnegie Observatories, 813 Santa Barbara Street, Pasadena, CA 91101 (United States)

    2015-11-20

    We present the SuperNova Explosion Code (SNEC), an open-source Lagrangian code for the hydrodynamics and equilibrium-diffusion radiation transport in the expanding envelopes of supernovae. Given a model of a progenitor star, an explosion energy, and an amount and distribution of radioactive nickel, SNEC generates the bolometric light curve, as well as the light curves in different broad bands assuming blackbody emission. As a first application of SNEC, we consider the explosions of a grid of 15 M{sub ⊙} (at zero-age main sequence, ZAMS) stars whose hydrogen envelopes are stripped to different extents and at different points in their evolution. The resulting light curves exhibit plateaus with durations of ∼20–100 days if ≳1.5–2 M{sub ⊙} of hydrogen-rich material is left and no plateau if less hydrogen-rich material is left. If these shorter plateau lengths are not seen for SNe IIP in nature, it suggests that, at least for ZAMS masses ≲20 M{sub ⊙}, hydrogen mass loss occurs as an all or nothing process. This perhaps points to the important role binary interactions play in generating the observed mass-stripped supernovae (i.e., Type Ib/c events). These light curves are also unlike what is typically seen for SNe IIL, arguing that simply varying the amount of mass loss cannot explain these events. The most stripped models begin to show double-peaked light curves similar to what is often seen for SNe IIb, confirming previous work that these supernovae can come from progenitors that have a small amount of hydrogen and a radius of ∼500 R{sub ⊙}.

  11. Impact of extraneous mispositioned events on motion-corrected brain SPECT images of freely moving animals

    International Nuclear Information System (INIS)

    Angelis, Georgios I.; Ryder, William J.; Bashar, Rezaul; Meikle, Steven R.; Fulton, Roger R.

    2014-01-01

    Purpose: Single photon emission computed tomography (SPECT) brain imaging of freely moving small animals would allow a wide range of important neurological processes and behaviors to be studied, which are normally inhibited by anesthetic drugs or precluded due to the animal being restrained. While rigid body motion of the head can be tracked and accounted for in the reconstruction, activity in the torso may confound brain measurements, especially since motion of the torso is more complex (i.e., nonrigid) and not well correlated with that of the head. The authors investigated the impact of mispositioned events and attenuation due to the torso on the accuracy of motion corrected brain images of freely moving mice. Methods: Monte Carlo simulations of a realistic voxelized mouse phantom and a dual compartment phantom were performed. Each phantom comprised a target and an extraneous compartment which were able to move independently of each other. Motion correction was performed based on the known motion of the target compartment only. Two SPECT camera geometries were investigated: a rotating single head detector and a stationary full ring detector. The effects of motion, detector geometry, and energy of the emitted photons (hence, attenuation) on bias and noise in reconstructed brain regions were evaluated. Results: The authors observed two main sources of bias: (a) motion-related inconsistencies in the projection data and (b) the mismatch between attenuation and emission. Both effects are caused by the assumption that the orientation of the torso is difficult to track and model, and therefore cannot be conveniently corrected for. The motion induced bias in some regions was up to 12% when no attenuation effects were considered, while it reached 40% when also combined with attenuation related inconsistencies. The detector geometry (i.e., rotating vs full ring) has a big impact on the accuracy of the reconstructed images, with the full ring detector being more

  12. Studying the co-evolution of production and test code in open source and industrial developer test processes through repository mining

    NARCIS (Netherlands)

    Zaidman, A.; Van Rompaey, B.; Van Deursen, A.; Demeyer, S.

    2010-01-01

    Many software production processes advocate rigorous development testing alongside functional code writing, which implies that both test code and production code should co-evolve. To gain insight in the nature of this co-evolution, this paper proposes three views (realized by a tool called TeMo)

  13. Source Code Analysis Laboratory (SCALe)

    Science.gov (United States)

    2012-04-01

    products (including services) and processes. The agency has also published ISO / IEC 17025 :2005 General Requirements for the Competence of Testing...SCALe undertakes. Testing and calibration laboratories that comply with ISO / IEC 17025 also operate in accordance with ISO 9001. • NIST National...assessed by the accreditation body against all of the requirements of ISO / IEC 17025 : 2005 General requirements for the competence of testing and

  14. Cavity Resonator Wireless Power Transfer System for Freely Moving Animal Experiments.

    Science.gov (United States)

    Mei, Henry; Thackston, Kyle A; Bercich, Rebecca A; Jefferys, John G R; Irazoqui, Pedro P

    2017-04-01

    The goal of this paper is to create a large wireless powering arena for powering small devices implanted in freely behaving rodents. We design a cavity resonator based wireless power transfer (WPT) system and utilize our previously developed optimal impedance matching methodology to achieve effective WPT performance for operating sophisticated implantable devices, made with miniature receive coils (powering fidelity of 93.53% over nine recording sessions across nine weeks, indicating nearly continuous device operation for a freely behaving rat within the large cavity resonator space. We have developed and demonstrated a cavity resonator based WPT system for long term experiments involving freely behaving small animals. This cavity resonator based WPT system offers an effective and simple method for wirelessly powering miniaturized devices implanted in freely moving small animals within the largest space.

  15. Passive sampling methods for contaminated sediments: Scientific rationale supporting use of freely dissolved concentrations

    DEFF Research Database (Denmark)

    Mayer, Philipp; Parkerton, Thomas F.; Adams, Rachel G.

    2014-01-01

    Passive sampling methods (PSMs) allow the quantification of the freely dissolved concentration (Cfree ) of an organic contaminant even in complex matrices such as sediments. Cfree is directly related to a contaminant's chemical activity, which drives spontaneous processes including diffusive upta...

  16. Reactor lattice codes

    International Nuclear Information System (INIS)

    Kulikowska, T.

    1999-01-01

    The present lecture has a main goal to show how the transport lattice calculations are realised in a standard computer code. This is illustrated on the example of the WIMSD code, belonging to the most popular tools for reactor calculations. Most of the approaches discussed here can be easily modified to any other lattice code. The description of the code assumes the basic knowledge of reactor lattice, on the level given in the lecture on 'Reactor lattice transport calculations'. For more advanced explanation of the WIMSD code the reader is directed to the detailed descriptions of the code cited in References. The discussion of the methods and models included in the code is followed by the generally used homogenisation procedure and several numerical examples of discrepancies in calculated multiplication factors based on different sources of library data. (author)

  17. Freely-migrating defects: Their production and interaction with cascade remnants

    International Nuclear Information System (INIS)

    Rehn, L.E.; Wiedersich, H.

    1991-05-01

    Many microstructural changes that occur during irradiation are driven primarily by freely-migrating defects, i.e. those defects which escape from nascent cascades to migrate over distances that are large relative to typical cascade dimensions. Several measurements during irradiation at elevated temperatures have shown that the survival rate of freely-migrating defects decreases much more strongly with increasing primary recoil energy than does the survival rate for defects generated at liquid helium temperatures. For typical fission or fusion recoil spectra, and for heavy-ion bombardment, the fraction of defects that migrate long-distances is apparently only ∼1% of the calculated dpa. This small surviving fraction of freely-migrating defects results at least partially from additional intracascade recombination at elevated temperatures. However, cascade remnants, e.g., vacancy and interstitial clusters, also contribute by enhancing intercascade defect annihilation. A recently developed rate-theory approach is used to discuss the relative importance of intra- and intercascade recombination to the survival rate of freely-migrating defects. Within the validity of certain simplifying assumptions, the additional sink density provided by defect clusters produced directly within individual cascades can explain the difference between a defect survival rate of about 30% for low dose, low temperature irradiations with heavy ions, and a survival rate of only ∼1% for freely-migrating defects at elevated temperatures. The status of our current understanding of freely-migrating defects, including remaining unanswered questions, is also discussed. 33 refs., 5 figs

  18. Study of the source-detector system geometry using the MCNP-X code in the flowrate measurement with radioactive tracers

    Energy Technology Data Exchange (ETDEWEB)

    Avilan Puertas, Eddie, E-mail: epuertas@nuclear.ufrj.br [Universidad Central de Venezuela (UCV), Facultad de Ingenieria, Departamento de Fisica Aplicada, Caracas (Venezuela, Bolivarian Republic of); Braz, Delson, E-mail: delson@lin.ufrj.br [Coordenacao dos Programas de Pos-Graduacao em Engenharia (PEN/COPPE/UFRJ), Rio de Janeiro, RJ (Brazil). Programa de Engenharia Nuclear; Brandao, Luis E.; Salgado, Cesar M., E-mail: brandao@ien.gov.br, E-mail: otero@ien.gov.br [Instituto de Engenharia Nuclear (IEN/CNEN-RJ), Rio de Janeiro, RJ (Brazil)

    2015-07-01

    The use radioactive tracers for flow rate measurement is applied to a great variety of situations, however the accuracy of the technique is highly dependent of the adequate choice of the experimental measurement conditions. To measure flow rate of fluids in ducts partially filled, is necessary to measure the fluid flow velocity and the fluid height. The flow velocity can be measured with the cross correlation function and the fluid level, with a fluid level meter system. One of the error factors when measuring flow rate, is on the correct setting of the source-detector of the fluid level meter system. The goal of the present work is to establish by mean of MCNP-X code simulations the experimental parameters to measure the fluid level. The experimental tests will be realized in a flow rate system of 10 mm of diameter of acrylic tube for water and oil as fluids. The radioactive tracer to be used is the {sup 82}Br and for the detection will be employed two 1″ NaI(Tl) scintillator detectors, shielded with collimators of 0.5 cm and 1 cm of circular aperture diameter. (author)

  19. Neutron and photon measurements through concrete from a 15 GeV electron beam on a target-comparison with models and calculations. [Intermediate energy source term, Monte Carlo code

    Energy Technology Data Exchange (ETDEWEB)

    Jenkins, T M [Stanford Linear Accelerator Center, CA (USA)

    1979-02-15

    Measurements of neutron and photon dose equivalents from a 15 GeV electron beam striking an iron target inside a scale model of a PEP IR hall are described, and compared with analytic-empirical calculations and with the Monte Carlo code, MORSE. The MORSE code is able to predict both absolute neutron and photon dose equivalents for geometries where the shield is relatively thin, but fails as the shield thickness is increased. An intermediate energy source term is postulated for analytic-empirical neutron shielding calculations to go along with the giant resonance and high energy terms, and a new source term due to neutron capture is postulated for analytic-empirical photon shielding calculations. The source strengths for each energy source term, and each type, are given from analysis of the measurements.

  20. ASA24 enables multiple automatically coded self-administered 24-hour recalls and food records

    Science.gov (United States)

    A freely available web-based tool for epidemiologic, interventional, behavioral, or clinical research from NCI that enables multiple automatically coded self-administered 24-hour recalls and food records.

  1. NSDann2BS, a neutron spectrum unfolding code based on neural networks technology and two bonner spheres

    Science.gov (United States)

    Ortiz-Rodríguez, J. M.; Reyes Alfaro, A.; Reyes Haro, A.; Solís Sánches, L. O.; Miranda, R. Castañeda; Cervantes Viramontes, J. M.; Vega-Carrillo, H. R.

    2013-07-01

    In this work a neutron spectrum unfolding code, based on artificial intelligence technology is presented. The code called "Neutron Spectrometry and Dosimetry with Artificial Neural Networks and two Bonner spheres", (NSDann2BS), was designed in a graphical user interface under the LabVIEW programming environment. The main features of this code are to use an embedded artificial neural network architecture optimized with the "Robust design of artificial neural networks methodology" and to use two Bonner spheres as the only piece of information. In order to build the code here presented, once the net topology was optimized and properly trained, knowledge stored at synaptic weights was extracted and using a graphical framework build on the LabVIEW programming environment, the NSDann2BS code was designed. This code is friendly, intuitive and easy to use for the end user. The code is freely available upon request to authors. To demonstrate the use of the neural net embedded in the NSDann2BS code, the rate counts of 252Cf, 241AmBe and 239PuBe neutron sources measured with a Bonner spheres system.

  2. NSDann2BS, a neutron spectrum unfolding code based on neural networks technology and two bonner spheres

    International Nuclear Information System (INIS)

    Ortiz-Rodríguez, J. M.; Reyes Alfaro, A.; Reyes Haro, A.; Solís Sánches, L. O.; Miranda, R. Castañeda; Cervantes Viramontes, J. M.; Vega-Carrillo, H. R.

    2013-01-01

    In this work a neutron spectrum unfolding code, based on artificial intelligence technology is presented. The code called ''Neutron Spectrometry and Dosimetry with Artificial Neural Networks and two Bonner spheres'', (NSDann2BS), was designed in a graphical user interface under the LabVIEW programming environment. The main features of this code are to use an embedded artificial neural network architecture optimized with the ''Robust design of artificial neural networks methodology'' and to use two Bonner spheres as the only piece of information. In order to build the code here presented, once the net topology was optimized and properly trained, knowledge stored at synaptic weights was extracted and using a graphical framework build on the LabVIEW programming environment, the NSDann2BS code was designed. This code is friendly, intuitive and easy to use for the end user. The code is freely available upon request to authors. To demonstrate the use of the neural net embedded in the NSDann2BS code, the rate counts of 252 Cf, 241 AmBe and 239 PuBe neutron sources measured with a Bonner spheres system

  3. NSDann2BS, a neutron spectrum unfolding code based on neural networks technology and two bonner spheres

    Energy Technology Data Exchange (ETDEWEB)

    Ortiz-Rodriguez, J. M.; Reyes Alfaro, A.; Reyes Haro, A.; Solis Sanches, L. O.; Miranda, R. Castaneda; Cervantes Viramontes, J. M. [Universidad Autonoma de Zacatecas, Unidad Academica de Ingenieria Electrica. Av. Ramon Lopez Velarde 801. Col. Centro Zacatecas, Zac (Mexico); Vega-Carrillo, H. R. [Universidad Autonoma de Zacatecas, Unidad Academica de Ingenieria Electrica. Av. Ramon Lopez Velarde 801. Col. Centro Zacatecas, Zac., Mexico. and Unidad Academica de Estudios Nucleares. C. Cip (Mexico)

    2013-07-03

    In this work a neutron spectrum unfolding code, based on artificial intelligence technology is presented. The code called ''Neutron Spectrometry and Dosimetry with Artificial Neural Networks and two Bonner spheres'', (NSDann2BS), was designed in a graphical user interface under the LabVIEW programming environment. The main features of this code are to use an embedded artificial neural network architecture optimized with the ''Robust design of artificial neural networks methodology'' and to use two Bonner spheres as the only piece of information. In order to build the code here presented, once the net topology was optimized and properly trained, knowledge stored at synaptic weights was extracted and using a graphical framework build on the LabVIEW programming environment, the NSDann2BS code was designed. This code is friendly, intuitive and easy to use for the end user. The code is freely available upon request to authors. To demonstrate the use of the neural net embedded in the NSDann2BS code, the rate counts of {sup 252}Cf, {sup 241}AmBe and {sup 239}PuBe neutron sources measured with a Bonner spheres system.

  4. Precision measurement of electric organ discharge timing from freely moving weakly electric fish.

    Science.gov (United States)

    Jun, James J; Longtin, André; Maler, Leonard

    2012-04-01

    Physiological measurements from an unrestrained, untethered, and freely moving animal permit analyses of neural states correlated to naturalistic behaviors of interest. Precise and reliable remote measurements remain technically challenging due to animal movement, which perturbs the relative geometries between the animal and sensors. Pulse-type electric fish generate a train of discrete and stereotyped electric organ discharges (EOD) to sense their surroundings actively, and rapid modulation of the discharge rate occurs while free swimming in Gymnotus sp. The modulation of EOD rates is a useful indicator of the fish's central state such as resting, alertness, and learning associated with exploration. However, the EOD pulse waveforms remotely observed at a pair of dipole electrodes continuously vary as the fish swims relative to the electrodes, which biases the judgment of the actual pulse timing. To measure the EOD pulse timing more accurately, reliably, and noninvasively from a free-swimming fish, we propose a novel method based on the principles of waveform reshaping and spatial averaging. Our method is implemented using envelope extraction and multichannel summation, which is more precise and reliable compared with other widely used threshold- or peak-based methods according to the tests performed under various source-detector geometries. Using the same method, we constructed a real-time electronic pulse detector performing an additional online pulse discrimination routine to enhance further the detection reliability. Our stand-alone pulse detector performed with high temporal precision (<10 μs) and reliability (error <1 per 10(6) pulses) and permits longer recording duration by storing only event time stamps (4 bytes/pulse).

  5. Coding Partitions

    Directory of Open Access Journals (Sweden)

    Fabio Burderi

    2007-05-01

    Full Text Available Motivated by the study of decipherability conditions for codes weaker than Unique Decipherability (UD, we introduce the notion of coding partition. Such a notion generalizes that of UD code and, for codes that are not UD, allows to recover the ``unique decipherability" at the level of the classes of the partition. By tacking into account the natural order between the partitions, we define the characteristic partition of a code X as the finest coding partition of X. This leads to introduce the canonical decomposition of a code in at most one unambiguouscomponent and other (if any totally ambiguouscomponents. In the case the code is finite, we give an algorithm for computing its canonical partition. This, in particular, allows to decide whether a given partition of a finite code X is a coding partition. This last problem is then approached in the case the code is a rational set. We prove its decidability under the hypothesis that the partition contains a finite number of classes and each class is a rational set. Moreover we conjecture that the canonical partition satisfies such a hypothesis. Finally we consider also some relationships between coding partitions and varieties of codes.

  6. HELIOS–RETRIEVAL: An Open-source, Nested Sampling Atmospheric Retrieval Code; Application to the HR 8799 Exoplanets and Inferred Constraints for Planet Formation

    Energy Technology Data Exchange (ETDEWEB)

    Lavie, Baptiste; Mendonça, João M.; Malik, Matej; Demory, Brice-Olivier; Grimm, Simon L. [University of Bern, Space Research and Planetary Sciences, Sidlerstrasse 5, CH-3012, Bern (Switzerland); Mordasini, Christoph; Oreshenko, Maria; Heng, Kevin [University of Bern, Center for Space and Habitability, Sidlerstrasse 5, CH-3012, Bern (Switzerland); Bonnefoy, Mickaël [Université Grenoble Alpes, IPAG, F-38000, Grenoble (France); Ehrenreich, David, E-mail: baptiste.lavie@space.unibe.ch, E-mail: kevin.heng@csh.unibe.ch [Observatoire de l’Université de Genève, 51 chemin des Maillettes, 1290, Sauverny (Switzerland)

    2017-09-01

    We present an open-source retrieval code named HELIOS–RETRIEVAL, designed to obtain chemical abundances and temperature–pressure profiles by inverting the measured spectra of exoplanetary atmospheres. In our forward model, we use an exact solution of the radiative transfer equation, in the pure absorption limit, which allows us to analytically integrate over all of the outgoing rays. Two chemistry models are considered: unconstrained chemistry and equilibrium chemistry (enforced via analytical formulae). The nested sampling algorithm allows us to formally implement Occam’s Razor based on a comparison of the Bayesian evidence between models. We perform a retrieval analysis on the measured spectra of the four HR 8799 directly imaged exoplanets. Chemical equilibrium is disfavored for HR 8799b and c. We find supersolar C/H and O/H values for the outer HR 8799b and c exoplanets, while the inner HR 8799d and e exoplanets have a range of C/H and O/H values. The C/O values range from being superstellar for HR 8799b to being consistent with stellar for HR 8799c and being substellar for HR 8799d and e. If these retrieved properties are representative of the bulk compositions of the exoplanets, then they are inconsistent with formation via gravitational instability (without late-time accretion) and consistent with a core accretion scenario in which late-time accretion of ices occurred differently for the inner and outer exoplanets. For HR 8799e, we find that spectroscopy in the K band is crucial for constraining C/O and C/H. HELIOS–RETRIEVAL is publicly available as part of the Exoclimes Simulation Platform (http://www.exoclime.org).

  7. Simulation of equivalent dose due to accidental electron beam loss in Indus-1 and Indus-2 synchrotron radiation sources using FLUKA code

    International Nuclear Information System (INIS)

    Sahani, P.K.; Dev, Vipin; Singh, Gurnam; Haridas, G.; Thakkar, K.K.; Sarkar, P.K.; Sharma, D.N.

    2008-01-01

    Indus-1 and Indus-2 are two Synchrotron radiation sources at Raja Ramanna Centre for Advanced Technology (RRCAT), India. Stored electron energy in Indus-1 and Indus-2 are 450MeV and 2.5GeV respectively. During operation of storage ring, accidental electron beam loss may occur in addition to normal beam losses. The Bremsstrahlung radiation produced due to the beam losses creates a major radiation hazard in these high energy electron accelerators. FLUKA, the Monte Carlo radiation transport code is used to simulate the accidental beam loss. The simulation was carried out to estimate the equivalent dose likely to be received by a trapped person closer to the storage ring. Depth dose profile in water phantom for 450MeV and 2.5GeV electron beam is generated, from which percentage energy absorbed in 30cm water phantom (analogous to human body) is calculated. The simulation showed the percentage energy deposition in the phantom is about 19% for 450MeV electron and 4.3% for 2.5GeV electron. The dose build up factor in 30cm water phantom for 450MeV and 2.5GeV electron beam are found to be 1.85 and 2.94 respectively. Based on the depth dose profile, dose equivalent index of 0.026Sv and 1.08Sv are likely to be received by the trapped person near the storage ring in Indus-1 and Indus-2 respectively. (author)

  8. Soil Monitor: an advanced and freely accesible platform to challenge soil sealing in Italy

    Science.gov (United States)

    Langella, Giuliano; Basile, Angelo; Giannecchini, Simone; Domenico Moccia, Francesco; Munafò, Michele; Terribile, Fabio

    2017-04-01

    Soil sealing is known to be one of the most serious soil degradation processes since it greatly disturbs or removes essential ecosystem services. Although important policy documents (Roadmap to a Resource Efficient in Europe, SDG'S) promise to mitigate this problem, there are still no signs of change and today soil sealing continues to increase globally. We believe an immediate action is required to reduce the distance between the grand policy declarations and the poor availability of operational - and scientifically robust - tools to challenge soil sealing. These tools must be able to support the decisions made by people who manage and control the soil sealing, namely urban and landscape planning professionals and authorities. In this contribution, we demonstrate that soil sealing can be effectively challenged by the implementation of a dedicated Geospatial Cyberinfrastructure. The platform we are developing - named Soil Monitor - is at now a well-functioning prototype freely available at http://www.soilmonitor.it/. It has been developed by research scientists coming from different disciplines. The national authority for environmental protection (ISPRA) provided the dataset while INU (Italian association of urban planners) tested the soil sealing and the urban planning indicators. More generally, Soil Monitor has been designed to support the Italian policy documents connected to soil sealing: AS 1181, AS 2383, L. 22 May 2015, n. 68; L. 28 December, n. 221). Thus, it connects many different soil sealing aspects including science, community, policy and economy. Soil Monitor performs geospatial computation in real-time to support the decision making in the landscape planning. This aims at measuring soil sealing in order to mitigate it and in particular at recognizing actions to achieve the land degradation neutrality. The web platform covers the entire Italy, even though it is "Country-agnostic". Data are processed at a very high spatial resolution (10-20 m), which

  9. Efficient Coding of Information: Huffman Coding -RE ...

    Indian Academy of Sciences (India)

    to a stream of equally-likely symbols so as to recover the original stream in the event of errors. The for- ... The source-coding problem is one of finding a mapping from U to a ... probability that the random variable X takes the value x written as ...

  10. Calculations of fuel burn up and radionuclide inventories in the Syrian miniature neutron source reactor using the WIMSD4 and CITATION codes

    International Nuclear Information System (INIS)

    Khattab, K.

    2005-01-01

    The WIMSD4 code is used to generate the fuel group constants and the infinite multiplication factor as a function of the reactor operating time for 10, 20, and 30 k W operating power levels. The uranium burn up rate and burn up percentage, the amounts of the plutonium isotopes, the concentrations and radioactivities of the fission products and actinide radionuclides accumulated in the reactor core, and the total radioactivity of the reactor core are calculated using the WIMSD4 code as well. The CITATION code is used to calculate the changes in the effective multiplication factor of the reactor.(author)

  11. The MIMIC Code Repository: enabling reproducibility in critical care research.

    Science.gov (United States)

    Johnson, Alistair Ew; Stone, David J; Celi, Leo A; Pollard, Tom J

    2018-01-01

    Lack of reproducibility in medical studies is a barrier to the generation of a robust knowledge base to support clinical decision-making. In this paper we outline the Medical Information Mart for Intensive Care (MIMIC) Code Repository, a centralized code base for generating reproducible studies on an openly available critical care dataset. Code is provided to load the data into a relational structure, create extractions of the data, and reproduce entire analysis plans including research studies. Concepts extracted include severity of illness scores, comorbid status, administrative definitions of sepsis, physiologic criteria for sepsis, organ failure scores, treatment administration, and more. Executable documents are used for tutorials and reproduce published studies end-to-end, providing a template for future researchers to replicate. The repository's issue tracker enables community discussion about the data and concepts, allowing users to collaboratively improve the resource. The centralized repository provides a platform for users of the data to interact directly with the data generators, facilitating greater understanding of the data. It also provides a location for the community to collaborate on necessary concepts for research progress and share them with a larger audience. Consistent application of the same code for underlying concepts is a key step in ensuring that research studies on the MIMIC database are comparable and reproducible. By providing open source code alongside the freely accessible MIMIC-III database, we enable end-to-end reproducible analysis of electronic health records. © The Author 2017. Published by Oxford University Press on behalf of the American Medical Informatics Association.

  12. Fulcrum Network Codes

    DEFF Research Database (Denmark)

    2015-01-01

    Fulcrum network codes, which are a network coding framework, achieve three objectives: (i) to reduce the overhead per coded packet to almost 1 bit per source packet; (ii) to operate the network using only low field size operations at intermediate nodes, dramatically reducing complexity...... in the network; and (iii) to deliver an end-to-end performance that is close to that of a high field size network coding system for high-end receivers while simultaneously catering to low-end ones that can only decode in a lower field size. Sources may encode using a high field size expansion to increase...... the number of dimensions seen by the network using a linear mapping. Receivers can tradeoff computational effort with network delay, decoding in the high field size, the low field size, or a combination thereof....

  13. Emotions in freely varying and mono-pitched vowels, acoustic and EGG analyses.

    Science.gov (United States)

    Waaramaa, Teija; Palo, Pertti; Kankare, Elina

    2015-12-01

    Vocal emotions are expressed either by speech or singing. The difference is that in singing the pitch is predetermined while in speech it may vary freely. It was of interest to study whether there were voice quality differences between freely varying and mono-pitched vowels expressed by professional actors. Given their profession, actors have to be able to express emotions both by speech and singing. Electroglottogram and acoustic analyses of emotional utterances embedded in expressions of freely varying vowels [a:], [i:], [u:] (96 samples) and mono-pitched protracted vowels (96 samples) were studied. Contact quotient (CQEGG) was calculated using 35%, 55%, and 80% threshold levels. Three different threshold levels were used in order to evaluate their effects on emotions. Genders were studied separately. The results suggested significant gender differences for CQEGG 80% threshold level. SPL, CQEGG, and F4 were used to convey emotions, but to a lesser degree, when F0 was predetermined. Moreover, females showed fewer significant variations than males. Both genders used more hypofunctional phonation type in mono-pitched utterances than in the expressions with freely varying pitch. The present material warrants further study of the interplay between CQEGG threshold levels and formant frequencies, and listening tests to investigate the perceptual value of the mono-pitched vowels in the communication of emotions.

  14. Hippocampal activity during transient respiratory events in the freely behaving cat

    DEFF Research Database (Denmark)

    Poe, G R; Kristensen, Morten Pilgaard; Rector, D M

    1996-01-01

    We measured dorsal hippocampal activity accompanying sighs and apnea using reflectance imaging and electrophysiologic measures in freely behaving cats. Reflected 660-nm light from a 1-mm2 area of CA1 was captured during sighs and apnea at 25 Hz through a coherent image conduit coupled to a charge...

  15. Freely Accessible Chemical Database Resources of Compounds for in Silico Drug Discovery.

    Science.gov (United States)

    Yang, JingFang; Wang, Di; Jia, Chenyang; Wang, Mengyao; Hao, GeFei; Yang, GuangFu

    2018-05-07

    In silico drug discovery has been proved to be a solidly established key component in early drug discovery. However, this task is hampered by the limitation of quantity and quality of compound databases for screening. In order to overcome these obstacles, freely accessible database resources of compounds have bloomed in recent years. Nevertheless, how to choose appropriate tools to treat these freely accessible databases are crucial. To the best of our knowledge, this is the first systematic review on this issue. The existed advantages and drawbacks of chemical databases were analyzed and summarized based on the collected six categories of freely accessible chemical databases from literature in this review. Suggestions on how and in which conditions the usage of these databases could be reasonable were provided. Tools and procedures for building 3D structure chemical libraries were also introduced. In this review, we described the freely accessible chemical database resources for in silico drug discovery. In particular, the chemical information for building chemical database appears as attractive resources for drug design to alleviate experimental pressure. Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.org.

  16. Mass and heat transfer between a fluidized bed and a freely moving submerged sphere

    NARCIS (Netherlands)

    Prins, W.; Valk, M.

    1995-01-01

    For fluidized bed combustion and gasification of solid fuels, but also for various other fluidized bed processes such as drying, granulation and evaporation, mass and heat transport to (or from) a particle freely moving in the fluidized bed is of great importance. The combustion rate of a

  17. Concentration of frequencies of trapped waves in problems on freely floating bodies

    Energy Technology Data Exchange (ETDEWEB)

    Nazarov, Sergei A [Institute of Problems of Mechanical Engineering, Russian Academy of Sciences, St.-Petersburg (Russian Federation)

    2012-09-30

    It is shown that by choosing the shape of two identical bodies floating freely in a channel with symmetric cross-section it is possible to form any pre-assigned number of linearly independent trapped waves (localized solutions). Bibliography: 27 titles.

  18. A lightweight telemetry system for recording neuronal activity in freely behaving small animals

    NARCIS (Netherlands)

    Schregardus, D.S.; Pieneman, A.W.; ter Maat, A.; Brouwer, T.J.F.; Gahr, M.L.

    2006-01-01

    A miniature lightweight radio telemetric device is described which is shown to be suitable for recording neuronal activity in freely behaving animals. Its size (12 × 5 × 8 mm) and weight (1.0-1.1 g with batteries, 0.4-0.5 g without) make the device particularly suitable for recording neuronal units

  19. Lattice Index Coding

    OpenAIRE

    Natarajan, Lakshmi; Hong, Yi; Viterbo, Emanuele

    2014-01-01

    The index coding problem involves a sender with K messages to be transmitted across a broadcast channel, and a set of receivers each of which demands a subset of the K messages while having prior knowledge of a different subset as side information. We consider the specific case of noisy index coding where the broadcast channel is Gaussian and every receiver demands all the messages from the source. Instances of this communication problem arise in wireless relay networks, sensor networks, and ...

  20. Software Certification - Coding, Code, and Coders

    Science.gov (United States)

    Havelund, Klaus; Holzmann, Gerard J.

    2011-01-01

    We describe a certification approach for software development that has been adopted at our organization. JPL develops robotic spacecraft for the exploration of the solar system. The flight software that controls these spacecraft is considered to be mission critical. We argue that the goal of a software certification process cannot be the development of "perfect" software, i.e., software that can be formally proven to be correct under all imaginable and unimaginable circumstances. More realistically, the goal is to guarantee a software development process that is conducted by knowledgeable engineers, who follow generally accepted procedures to control known risks, while meeting agreed upon standards of workmanship. We target three specific issues that must be addressed in such a certification procedure: the coding process, the code that is developed, and the skills of the coders. The coding process is driven by standards (e.g., a coding standard) and tools. The code is mechanically checked against the standard with the help of state-of-the-art static source code analyzers. The coders, finally, are certified in on-site training courses that include formal exams.

  1. YNOGK: A NEW PUBLIC CODE FOR CALCULATING NULL GEODESICS IN THE KERR SPACETIME

    Energy Technology Data Exchange (ETDEWEB)

    Yang Xiaolin; Wang Jiancheng, E-mail: yangxl@ynao.ac.cn [National Astronomical Observatories, Yunnan Observatory, Chinese Academy of Sciences, Kunming 650011 (China)

    2013-07-01

    Following the work of Dexter and Agol, we present a new public code for the fast calculation of null geodesics in the Kerr spacetime. Using Weierstrass's and Jacobi's elliptic functions, we express all coordinates and affine parameters as analytical and numerical functions of a parameter p, which is an integral value along the geodesic. This is the main difference between our code and previous similar ones. The advantage of this treatment is that the information about the turning points does not need to be specified in advance by the user, and many applications such as imaging, the calculation of line profiles, and the observer-emitter problem, become root-finding problems. All elliptic integrations are computed by Carlson's elliptic integral method as in Dexter and Agol, which guarantees the fast computational speed of our code. The formulae to compute the constants of motion given by Cunningham and Bardeen have been extended, which allow one to readily handle situations in which the emitter or the observer has an arbitrary distance from, and motion state with respect to, the central compact object. The validation of the code has been extensively tested through applications to toy problems from the literature. The source FORTRAN code is freely available for download on our Web site http://www1.ynao.ac.cn/{approx}yangxl/yxl.html.

  2. YNOGK: A NEW PUBLIC CODE FOR CALCULATING NULL GEODESICS IN THE KERR SPACETIME

    International Nuclear Information System (INIS)

    Yang Xiaolin; Wang Jiancheng

    2013-01-01

    Following the work of Dexter and Agol, we present a new public code for the fast calculation of null geodesics in the Kerr spacetime. Using Weierstrass's and Jacobi's elliptic functions, we express all coordinates and affine parameters as analytical and numerical functions of a parameter p, which is an integral value along the geodesic. This is the main difference between our code and previous similar ones. The advantage of this treatment is that the information about the turning points does not need to be specified in advance by the user, and many applications such as imaging, the calculation of line profiles, and the observer-emitter problem, become root-finding problems. All elliptic integrations are computed by Carlson's elliptic integral method as in Dexter and Agol, which guarantees the fast computational speed of our code. The formulae to compute the constants of motion given by Cunningham and Bardeen have been extended, which allow one to readily handle situations in which the emitter or the observer has an arbitrary distance from, and motion state with respect to, the central compact object. The validation of the code has been extensively tested through applications to toy problems from the literature. The source FORTRAN code is freely available for download on our Web site http://www1.ynao.ac.cn/~yangxl/yxl.html.

  3. Gravity inversion code

    International Nuclear Information System (INIS)

    Burkhard, N.R.

    1979-01-01

    The gravity inversion code applies stabilized linear inverse theory to determine the topography of a subsurface density anomaly from Bouguer gravity data. The gravity inversion program consists of four source codes: SEARCH, TREND, INVERT, and AVERAGE. TREND and INVERT are used iteratively to converge on a solution. SEARCH forms the input gravity data files for Nevada Test Site data. AVERAGE performs a covariance analysis on the solution. This document describes the necessary input files and the proper operation of the code. 2 figures, 2 tables

  4. Software testing and source code for the calculation of clearance values. Final report; Erprobung von Software und Quellcode zur Berechnung von Freigabewerten. Abschlussbericht

    Energy Technology Data Exchange (ETDEWEB)

    Artmann, Andreas; Meyering, Henrich

    2016-11-15

    The GRS research project was aimed to the test the appropriateness of the software package ''residual radioactivity'' (RESRAD) for the calculation of clearance values according to German and European regulations. Comparative evaluations were performed with RESRAD-OFFSITE and the code SiWa-PRO DSS used by GRS and the GRS program code ARTM. It is recommended to use RESRAD-OFFSITE for comparative calculations. The dose relevant air-path dispersion of radionuclides should not be modeled using RESRAD-OFFSITE, the use of ARTM is recommended. The sensitivity analysis integrated into RESRAD-OFFSITE allows a fast identification of crucial parameters.

  5. GAMMA-CLOUD: a computer code for calculating gamma-exposure due to a radioactive cloud released from a point source

    Energy Technology Data Exchange (ETDEWEB)

    Sugimoto, O [Chugoku Electric Power Co. Inc., Hiroshima (Japan); Sawaguchi, Y; Kaneko, M

    1979-03-01

    A computer code, designated GAMMA-CLOUD, has been developed by specialists of electric power companies to meet requests from the companies to have a unified means of calculating annual external doses from routine releases of radioactive gaseous effluents from nuclear power plants, based on the Japan Atomic Energy Commission's guides for environmental dose evaluation. GAMMA-CLOUD is written in FORTRAN language and its required capacity is less than 100 kilobytes. The average ..gamma..-exposure at an observation point can be calculated within a few minutes with comparable precision to other existing codes.

  6. Introduction to coding and information theory

    CERN Document Server

    Roman, Steven

    1997-01-01

    This book is intended to introduce coding theory and information theory to undergraduate students of mathematics and computer science. It begins with a review of probablity theory as applied to finite sample spaces and a general introduction to the nature and types of codes. The two subsequent chapters discuss information theory: efficiency of codes, the entropy of information sources, and Shannon's Noiseless Coding Theorem. The remaining three chapters deal with coding theory: communication channels, decoding in the presence of errors, the general theory of linear codes, and such specific codes as Hamming codes, the simplex codes, and many others.

  7. Speaking Code

    DEFF Research Database (Denmark)

    Cox, Geoff

    Speaking Code begins by invoking the “Hello World” convention used by programmers when learning a new language, helping to establish the interplay of text and code that runs through the book. Interweaving the voice of critical writing from the humanities with the tradition of computing and software...

  8. Prosthetic avian vocal organ controlled by a freely behaving bird based on a low dimensional model of the biomechanical periphery.

    Directory of Open Access Journals (Sweden)

    Ezequiel M Arneodo

    Full Text Available Because of the parallels found with human language production and acquisition, birdsong is an ideal animal model to study general mechanisms underlying complex, learned motor behavior. The rich and diverse vocalizations of songbirds emerge as a result of the interaction between a pattern generator in the brain and a highly nontrivial nonlinear periphery. Much of the complexity of this vocal behavior has been understood by studying the physics of the avian vocal organ, particularly the syrinx. A mathematical model describing the complex periphery as a nonlinear dynamical system leads to the conclusion that nontrivial behavior emerges even when the organ is commanded by simple motor instructions: smooth paths in a low dimensional parameter space. An analysis of the model provides insight into which parameters are responsible for generating a rich variety of diverse vocalizations, and what the physiological meaning of these parameters is. By recording the physiological motor instructions elicited by a spontaneously singing muted bird and computing the model on a Digital Signal Processor in real-time, we produce realistic synthetic vocalizations that replace the bird's own auditory feedback. In this way, we build a bio-prosthetic avian vocal organ driven by a freely behaving bird via its physiologically coded motor commands. Since it is based on a low-dimensional nonlinear mathematical model of the peripheral effector, the emulation of the motor behavior requires light computation, in such a way that our bio-prosthetic device can be implemented on a portable platform.

  9. Comparing the co-evolution of production and test code in open source and industrial developer test processes through repository mining

    NARCIS (Netherlands)

    Van Rompaey, B.; Zaidman, A.E.; Van Deursen, A.; Demeyer, S.

    2008-01-01

    This paper represents an extension to our previous work: Mining software repositories to study coevolution of production & test code. Proceedings of the International Conference on Software Testing, Verification, and Validation (ICST), IEEE Computer Society, 2008; doi:10.1109/ICST.2008.47

  10. Two-terminal video coding.

    Science.gov (United States)

    Yang, Yang; Stanković, Vladimir; Xiong, Zixiang; Zhao, Wei

    2009-03-01

    Following recent works on the rate region of the quadratic Gaussian two-terminal source coding problem and limit-approaching code designs, this paper examines multiterminal source coding of two correlated, i.e., stereo, video sequences to save the sum rate over independent coding of both sequences. Two multiterminal video coding schemes are proposed. In the first scheme, the left sequence of the stereo pair is coded by H.264/AVC and used at the joint decoder to facilitate Wyner-Ziv coding of the right video sequence. The first I-frame of the right sequence is successively coded by H.264/AVC Intracoding and Wyner-Ziv coding. An efficient stereo matching algorithm based on loopy belief propagation is then adopted at the decoder to produce pixel-level disparity maps between the corresponding frames of the two decoded video sequences on the fly. Based on the disparity maps, side information for both motion vectors and motion-compensated residual frames of the right sequence are generated at the decoder before Wyner-Ziv encoding. In the second scheme, source splitting is employed on top of classic and Wyner-Ziv coding for compression of both I-frames to allow flexible rate allocation between the two sequences. Experiments with both schemes on stereo video sequences using H.264/AVC, LDPC codes for Slepian-Wolf coding of the motion vectors, and scalar quantization in conjunction with LDPC codes for Wyner-Ziv coding of the residual coefficients give a slightly lower sum rate than separate H.264/AVC coding of both sequences at the same video quality.

  11. Columnar transmitter based wireless power delivery system for implantable device in freely moving animals.

    Science.gov (United States)

    Eom, Kyungsik; Jeong, Joonsoo; Lee, Tae Hyung; Lee, Sung Eun; Jun, Sang Bum; Kim, Sung June

    2013-01-01

    A wireless power delivery system is developed to deliver electrical power to the neuroprosthetic devices that are implanted into animals freely moving inside the cage. The wireless powering cage is designed for long-term animal experiments without cumbersome wires for power supply or the replacement of batteries. In the present study, we propose a novel wireless power transmission system using resonator-based inductive links to increase power efficiency and to minimize the efficiency variations. A columnar transmitter coil is proposed to provide lateral uniformity of power efficiency. Using this columnar transmitter coil, only 7.2% efficiency fluctuation occurs from the maximum transmission efficiency of 25.9%. A flexible polymer-based planar type receiver coil is fabricated and assembled with a neural stimulator and an electrode. Using the designed columnar transmitter coil, the implantable device successfully operates while it moves freely inside the cage.

  12. Freely Chosen Index Finger Tapping Frequency Is Increased in Repeated Bouts of Tapping.

    Science.gov (United States)

    Hansen, Ernst Albin; Ebbesen, Brian Duborg; Dalsgaard, Ane; Mora-Jensen, Mark Holten; Rasmussen, Jakob

    2015-01-01

    Healthy individuals (n = 40) performed index finger tapping at freely chosen frequency during repeated bouts and before and after near-maximal muscle action consisting of 3 intense flexions of the index finger metacarpal phalangeal joint. One experiment showed, unexpectedly, that a bout of tapping increased the tapping frequency in the subsequent bout. Thus, a cumulating increase of 8.2 ± 5.4% (p tapping frequency was still increased in consecutive bouts when rest periods were extended to 20 min. Besides, near-maximal muscle activation, followed by 5 min rest, did not affect the tapping frequency. In conclusion, freely chosen tapping frequency was increased in repeated bouts of tapping, which were separated by 10-20 min rest periods. The observed phenomenon is suggested to be termed repeated bout rate enhancement.

  13. Downhole instrument including a flexible probe which can travel freely around bends in a borehole

    International Nuclear Information System (INIS)

    Dickinson III, B. W. O.

    1985-01-01

    Bore hole instrument and methods of manufacturing and using the same. The instrument includes an elongated flexible probe which is inserted into a bore hole and can travel freely around bends of relatively short radius in the hole. The probe includes a plurality of sensors, explosive charges or the like which are spaced apart and embedded in a flexible body comprising a mass of cushioning material, with a flexible outer casing of fabric having a high tensile strength. The probe is driven into a bore hole in piston-like fashion, and the flexible body enables the probe to travel freely around bends of relatively short radius. Instrumentation for processing signals from the probe is located at the surface of the earth, and a flexible cable interconnects the instrumentation with the probe

  14. Navier-Stokes hydrodynamics of thermal collapse in a freely cooling granular gas.

    Science.gov (United States)

    Kolvin, Itamar; Livne, Eli; Meerson, Baruch

    2010-08-01

    We show that, in dimension higher than one, heat diffusion and viscosity cannot arrest thermal collapse in a freely evolving dilute granular gas, even in the absence of gravity. Thermal collapse involves a finite-time blowup of the gas density. It was predicted earlier in ideal, Euler hydrodynamics of dilute granular gases in the absence of gravity, and in nonideal, Navier-Stokes granular hydrodynamics in the presence of gravity. We determine, analytically and numerically, the dynamic scaling laws that characterize the gas flow close to collapse. We also investigate bifurcations of a freely evolving dilute granular gas in circular and wedge-shaped containers. Our results imply that, in general, thermal collapse can only be arrested when the gas density becomes comparable with the close-packing density of grains. This provides a natural explanation to the formation of densely packed clusters of particles in a variety of initially dilute granular flows.

  15. Pan-neuronal calcium imaging with cellular resolution in freely swimming zebrafish.

    Science.gov (United States)

    Kim, Dal Hyung; Kim, Jungsoo; Marques, João C; Grama, Abhinav; Hildebrand, David G C; Gu, Wenchao; Li, Jennifer M; Robson, Drew N

    2017-11-01

    Calcium imaging with cellular resolution typically requires an animal to be tethered under a microscope, which substantially restricts the range of behaviors that can be studied. To expand the behavioral repertoire amenable to imaging, we have developed a tracking microscope that enables whole-brain calcium imaging with cellular resolution in freely swimming larval zebrafish. This microscope uses infrared imaging to track a target animal in a behavior arena. On the basis of the predicted trajectory of the animal, we applied optimal control theory to a motorized stage system to cancel brain motion in three dimensions. We combined this motion-cancellation system with differential illumination focal filtering, a variant of HiLo microscopy, which enabled us to image the brain of a freely swimming larval zebrafish for more than an hour. This work expands the repertoire of natural behaviors that can be studied with cellular-resolution calcium imaging to potentially include spatial navigation, social behavior, feeding and reward.

  16. Eavesdropping on the "Ping-Pong" Quantum Communication Protocol Freely in a Noise Channel

    OpenAIRE

    Deng, Fu-Guo; Li, Xi-Han; Li, Chun-Yan; Zhou, Ping; Zhou, Hong-Yu

    2005-01-01

    We introduce an attack scheme for eavesdropping the ping-pong quantum communication protocol proposed by Bostr$\\ddot{o}$m and Felbinger [Phys. Rev. Lett. \\textbf{89}, 187902 (2002)] freely in a noise channel. The vicious eavesdropper, Eve, intercepts and measures the travel photon transmitted between the sender and the receiver. Then she replaces the quantum signal with a multi-photon signal in a same state, and measures the photons return with the measuring basis with which Eve prepares the ...

  17. Preoperative diagnosis and radiographic findings of a freely movable mucocele of the vermiform appendix

    Energy Technology Data Exchange (ETDEWEB)

    Shukunami, K.-I.; Kaneshima, M.; Kotsuji, F. [Fukui Medical Univ., Dept. of Obstetrics and Gynecology, Matsuoka-Cho, Yoshida-Gun, Fukui (Japan)

    2000-10-01

    Mucocele of the vermiform appendix is rarely diagnosed before surgery, although radiologic and ultrasonographic (US) findings have been reported. To our knowledge, there have been no previous reports of 2 different radiologic images of the cyst in the same patient during the preoperative period. We present 2 different shapes and locations of a freely movable mucocele of the appendix as it appeared before surgery. (author)

  18. LibCPIXE: A PIXE simulation open-source library for multilayered samples

    International Nuclear Information System (INIS)

    Pascual-Izarra, C.; Barradas, N.P.; Reis, M.A.

    2006-01-01

    Most particle induced X-ray emission (PIXE) data analysis codes are not focused on handling multilayered samples. We have developed an open-source library called 'LibCPIXE', for PIXE data analysis. It is written in standard C and implements functions for simulating X-ray yields of PIXE spectra taken from arbitrary samples, including multilayered targets. The library is designed to be fast, portable, modular and scalable, as well as to facilitate its incorporation into any existing program. In order to demonstrate the capabilities of the library, a program called CPIXE was developed and used to analyze various real samples involving both bulk and layered samples. Just as the library, the CPIXE source code is freely available under the General Public License. We demonstrate that it runs both under GNU/Linux systems as well as under MS Windows. There is in principle no limitation to port it to other platforms

  19. The Art of Readable Code

    CERN Document Server

    Boswell, Dustin

    2011-01-01

    As programmers, we've all seen source code that's so ugly and buggy it makes our brain ache. Over the past five years, authors Dustin Boswell and Trevor Foucher have analyzed hundreds of examples of "bad code" (much of it their own) to determine why they're bad and how they could be improved. Their conclusion? You need to write code that minimizes the time it would take someone else to understand it-even if that someone else is you. This book focuses on basic principles and practical techniques you can apply every time you write code. Using easy-to-digest code examples from different languag

  20. Responsibilities of the exporting state derived from the application of the code of conduct on the safety and security of radioactive sources and the guidance on the import and export

    International Nuclear Information System (INIS)

    Vidal, Dora

    2008-01-01

    Full text: 'The exporting state in deciding whether to authorize an export of radioactive sources should satisfy itself, insofar as practicable: 1) That the recipient is authorized by the importing state to receive and possess the source in accordance with its laws and regulations; 2) That the importing state has the appropriate technical and administrative capability, resources and regulatory structure needed for the management of the source(s) in a manner consistent with the guidance in the code, and consider, based upon available information: i) Whether the recipient has been engaged in clandestine or illegal procurement of radioactive sources; ii) Whether an import or export authorization for radioactive sources has been denied to the recipient or importing state, or whether the recipient or importing state has made diverted for purposes inconsistent with the code any import or export of radioactive sources previously authorized; and iii) The risk of diversion or malicious acts involving radioactive sources'. It also should take, once it has decided to authorize the export, 'appropriate steps to ensure that the export is conducted in a manner consistent with existing relevant international standards relating to the transport of radioactive materials an the importing State is notified in advance of each shipment'. The Guidance has done a great effort in fixing the requirements that the importing State has to fulfill and it is the exporting State which has to verify, satisfy, and consider if these requirements are in place. It is remarkable the responsibility of the exporting state in analyzing the export from the point of view of the capabilities of the importing State to manage the sources with the purpose of use it has and even once it is not useful any more. This paper has the intention of bringing to reflect the responsibility of the exporting State in relation to those radioactive sources that are exported or are to be exported and have to fulfill with the

  1. Coding Labour

    Directory of Open Access Journals (Sweden)

    Anthony McCosker

    2014-03-01

    Full Text Available As well as introducing the Coding Labour section, the authors explore the diffusion of code across the material contexts of everyday life, through the objects and tools of mediation, the systems and practices of cultural production and organisational management, and in the material conditions of labour. Taking code beyond computation and software, their specific focus is on the increasingly familiar connections between code and labour with a focus on the codification and modulation of affect through technologies and practices of management within the contemporary work organisation. In the grey literature of spreadsheets, minutes, workload models, email and the like they identify a violence of forms through which workplace affect, in its constant flux of crisis and ‘prodromal’ modes, is regulated and governed.

  2. Reliability and code level

    NARCIS (Netherlands)

    Kasperski, M.; Geurts, C.P.W.

    2005-01-01

    The paper describes the work of the IAWE Working Group WBG - Reliability and Code Level, one of the International Codification Working Groups set up at ICWE10 in Copenhagen. The following topics are covered: sources of uncertainties in the design wind load, appropriate design target values for the

  3. nRC: non-coding RNA Classifier based on structural features.

    Science.gov (United States)

    Fiannaca, Antonino; La Rosa, Massimo; La Paglia, Laura; Rizzo, Riccardo; Urso, Alfonso

    2017-01-01

    Non-coding RNA (ncRNA) are small non-coding sequences involved in gene expression regulation of many biological processes and diseases. The recent discovery of a large set of different ncRNAs with biologically relevant roles has opened the way to develop methods able to discriminate between the different ncRNA classes. Moreover, the lack of knowledge about the complete mechanisms in regulative processes, together with the development of high-throughput technologies, has required the help of bioinformatics tools in addressing biologists and clinicians with a deeper comprehension of the functional roles of ncRNAs. In this work, we introduce a new ncRNA classification tool, nRC (non-coding RNA Classifier). Our approach is based on features extraction from the ncRNA secondary structure together with a supervised classification algorithm implementing a deep learning architecture based on convolutional neural networks. We tested our approach for the classification of 13 different ncRNA classes. We obtained classification scores, using the most common statistical measures. In particular, we reach an accuracy and sensitivity score of about 74%. The proposed method outperforms other similar classification methods based on secondary structure features and machine learning algorithms, including the RNAcon tool that, to date, is the reference classifier. nRC tool is freely available as a docker image at https://hub.docker.com/r/tblab/nrc/. The source code of nRC tool is also available at https://github.com/IcarPA-TBlab/nrc.

  4. Investigation of the Effects of Tissue Inhomogeneities on the Dosimetric Parameters of a Cs-137 Brachytherapy Source using the MCNP4C Code

    Directory of Open Access Journals (Sweden)

    Mehdi Zehtabian

    2010-09-01

    Full Text Available Introduction: Brachytherapy is the use of small encapsulated radioactive sources in close vicinity of tumors. Various methods are used to obtain the dose distribution around brachytherapy sources. TG-43 is a dosimetry protocol proposed by the AAPM for determining dose distributions around brachytherapy sources. The goal of this study is to update this protocol for presence of bone and air inhomogenities.  Material and Methods: To update the dose rate constant parameter of the TG-43 formalism, the MCNP4C simulations were performed in phantoms composed of water-bone and water-air combinations. The values of dose at different distances from the source in both homogeneous and inhomogeneous phantoms were estimated in spherical tally cells of 0.5 mm radius using the F6 tally. Results: The percentages of dose reductions in presence of air and bone inhomogenities for the Cs-137 source were found to be 4% and 10%, respectively. Therefore, the updated dose rate constant (Λ will also decrease by the same percentages.   Discussion and Conclusion: It can be easily concluded that such dose variations are more noticeable when using lower energy sources such as Pd-103 or I-125.

  5. Electronic Contracts and the Personal data Protection of the Consumer: Sources Dialogue Between the Consumer Protection Code and the Internet Civil Mark.

    Directory of Open Access Journals (Sweden)

    Rosane Leal Da Silva

    2016-10-01

    Full Text Available This paper analyzes the personal data protection of the consumer and your vulnerability in interactive electronic contracts, aiming to point means of defense. For this, uses the deductive approach and starts of the electronic contracting to discuss the legal protection of the consumer in light of the capturing and processing of personal data by the furnisher. Considering the absence of law about personal data, concludes that electronic contracting expands the consumer vulnerability, which requires the principles application of the Consumer Protection Code, adding the Internet Civil Mark in relation to the privacy protection.

  6. Speech coding

    Energy Technology Data Exchange (ETDEWEB)

    Ravishankar, C., Hughes Network Systems, Germantown, MD

    1998-05-08

    Speech is the predominant means of communication between human beings and since the invention of the telephone by Alexander Graham Bell in 1876, speech services have remained to be the core service in almost all telecommunication systems. Original analog methods of telephony had the disadvantage of speech signal getting corrupted by noise, cross-talk and distortion Long haul transmissions which use repeaters to compensate for the loss in signal strength on transmission links also increase the associated noise and distortion. On the other hand digital transmission is relatively immune to noise, cross-talk and distortion primarily because of the capability to faithfully regenerate digital signal at each repeater purely based on a binary decision. Hence end-to-end performance of the digital link essentially becomes independent of the length and operating frequency bands of the link Hence from a transmission point of view digital transmission has been the preferred approach due to its higher immunity to noise. The need to carry digital speech became extremely important from a service provision point of view as well. Modem requirements have introduced the need for robust, flexible and secure services that can carry a multitude of signal types (such as voice, data and video) without a fundamental change in infrastructure. Such a requirement could not have been easily met without the advent of digital transmission systems, thereby requiring speech to be coded digitally. The term Speech Coding is often referred to techniques that represent or code speech signals either directly as a waveform or as a set of parameters by analyzing the speech signal. In either case, the codes are transmitted to the distant end where speech is reconstructed or synthesized using the received set of codes. A more generic term that is applicable to these techniques that is often interchangeably used with speech coding is the term voice coding. This term is more generic in the sense that the

  7. Optimal codes as Tanner codes with cyclic component codes

    DEFF Research Database (Denmark)

    Høholdt, Tom; Pinero, Fernando; Zeng, Peng

    2014-01-01

    In this article we study a class of graph codes with cyclic code component codes as affine variety codes. Within this class of Tanner codes we find some optimal binary codes. We use a particular subgraph of the point-line incidence plane of A(2,q) as the Tanner graph, and we are able to describe ...

  8. Tests of a 3D Self Magnetic Field Solver in the Finite Element Gun Code MICHELLE

    CERN Document Server

    Nelson, Eric M

    2005-01-01

    We have recently implemented a prototype 3d self magnetic field solver in the finite-element gun code MICHELLE. The new solver computes the magnetic vector potential on unstructured grids. The solver employs edge basis functions in the curl-curl formulation of the finite-element method. A novel current accumulation algorithm takes advantage of the unstructured grid particle tracker to produce a compatible source vector, for which the singular matrix equation is easily solved by the conjugate gradient method. We will present some test cases demonstrating the capabilities of the prototype 3d self magnetic field solver. One test case is self magnetic field in a square drift tube. Another is a relativistic axisymmetric beam freely expanding in a round pipe.

  9. Aztheca Code

    International Nuclear Information System (INIS)

    Quezada G, S.; Espinosa P, G.; Centeno P, J.; Sanchez M, H.

    2017-09-01

    This paper presents the Aztheca code, which is formed by the mathematical models of neutron kinetics, power generation, heat transfer, core thermo-hydraulics, recirculation systems, dynamic pressure and level models and control system. The Aztheca code is validated with plant data, as well as with predictions from the manufacturer when the reactor operates in a stationary state. On the other hand, to demonstrate that the model is applicable during a transient, an event occurred in a nuclear power plant with a BWR reactor is selected. The plant data are compared with the results obtained with RELAP-5 and the Aztheca model. The results show that both RELAP-5 and the Aztheca code have the ability to adequately predict the behavior of the reactor. (Author)

  10. Ready, steady… Code!

    CERN Multimedia

    Anaïs Schaeffer

    2013-01-01

    This summer, CERN took part in the Google Summer of Code programme for the third year in succession. Open to students from all over the world, this programme leads to very successful collaborations for open source software projects.   Image: GSoC 2013. Google Summer of Code (GSoC) is a global programme that offers student developers grants to write code for open-source software projects. Since its creation in 2005, the programme has brought together some 6,000 students from over 100 countries worldwide. The students selected by Google are paired with a mentor from one of the participating projects, which can be led by institutes, organisations, companies, etc. This year, CERN PH Department’s SFT (Software Development for Experiments) Group took part in the GSoC programme for the third time, submitting 15 open-source projects. “Once published on the Google Summer for Code website (in April), the projects are open to applications,” says Jakob Blomer, one of the o...

  11. PEAR code review

    International Nuclear Information System (INIS)

    De Wit, R.; Jamieson, T.; Lord, M.; Lafortune, J.F.

    1997-07-01

    As a necessary component in the continuous improvement and refinement of methodologies employed in the nuclear industry, regulatory agencies need to periodically evaluate these processes to improve confidence in results and ensure appropriate levels of safety are being achieved. The independent and objective review of industry-standard computer codes forms an essential part of this program. To this end, this work undertakes an in-depth review of the computer code PEAR (Public Exposures from Accidental Releases), developed by Atomic Energy of Canada Limited (AECL) to assess accidental releases from CANDU reactors. PEAR is based largely on the models contained in the Canadian Standards Association (CSA) N288.2-M91. This report presents the results of a detailed technical review of the PEAR code to identify any variations from the CSA standard and other supporting documentation, verify the source code, assess the quality of numerical models and results, and identify general strengths and weaknesses of the code. The version of the code employed in this review is the one which AECL intends to use for CANDU 9 safety analyses. (author)

  12. Vocable Code

    DEFF Research Database (Denmark)

    Soon, Winnie; Cox, Geoff

    2018-01-01

    a computational and poetic composition for two screens: on one of these, texts and voices are repeated and disrupted by mathematical chaos, together exploring the performativity of code and language; on the other, is a mix of a computer programming syntax and human language. In this sense queer code can...... be understood as both an object and subject of study that intervenes in the world’s ‘becoming' and how material bodies are produced via human and nonhuman practices. Through mixing the natural and computer language, this article presents a script in six parts from a performative lecture for two persons...

  13. NSURE code

    International Nuclear Information System (INIS)

    Rattan, D.S.

    1993-11-01

    NSURE stands for Near-Surface Repository code. NSURE is a performance assessment code. developed for the safety assessment of near-surface disposal facilities for low-level radioactive waste (LLRW). Part one of this report documents the NSURE model, governing equations and formulation of the mathematical models, and their implementation under the SYVAC3 executive. The NSURE model simulates the release of nuclides from an engineered vault, their subsequent transport via the groundwater and surface water pathways tot he biosphere, and predicts the resulting dose rate to a critical individual. Part two of this report consists of a User's manual, describing simulation procedures, input data preparation, output and example test cases

  14. A neutron spectrum unfolding computer code based on artificial neural networks

    International Nuclear Information System (INIS)

    Ortiz-Rodríguez, J.M.; Reyes Alfaro, A.; Reyes Haro, A.; Cervantes Viramontes, J.M.; Vega-Carrillo, H.R.

    2014-01-01

    in the HTML format. NSDann unfolding code is freely available, upon request to the authors. - Highlights: • An optimized artificial neural network was designed using robust design of neural nets. • Neural network was trained to solve neutron spectrometry and dosimetry problems. • Knowledge stored at synaptic weights after training neural net was extracted. • Using knowledge extracted, a neutron spectrum unfolding code was designed. • Neutron spectrum of a 241AmBe neutron source was unfolded using the code based on neural nets technology

  15. Flood Inundation Modelling Under Uncertainty Using Globally and Freely Available Remote Sensing Data

    Science.gov (United States)

    Yan, K.; Di Baldassarre, G.; Giustarini, L.; Solomatine, D. P.

    2012-04-01

    The extreme consequences of recent catastrophic events have highlighted that flood risk prevention still needs to be improved to reduce human losses and economic damages, which have considerably increased worldwide in recent years. Flood risk management and long term floodplain planning are vital for living with floods, which is the currently proposed approach to cope with floods. To support the decision making processes, a significant issue is the availability of data to build appropriate and reliable models, from which the needed information could be obtained. The desirable data for model building, calibration and validation are often not sufficient or available. A unique opportunity is offered nowadays by globally available data which can be freely downloaded from internet. This might open new opportunities for filling the gap between available and needed data, in order to build reliable models and potentially lead to the development of global inundation models to produce floodplain maps for the entire globe. However, there remains the question of what is the real potential of those global remote sensing data, characterized by different accuracy, for global inundation monitoring and how to integrate them with inundation models. This research aims at contributing to understand whether the current globally and freely available remote sensing data (e.g. SRTM, SAR) can be actually used to appropriately support inundation modelling. In this study, the SRTM DEM is used for hydraulic model building, while ENVISAT-ASAR satellite imagery is used for model validation. To test the usefulness of these globally and freely available data, a model based on the high resolution LiDAR DEM and ground data (high water marks) is used as benchmark. The work is carried out on a data-rich test site: the River Alzette in the north of Luxembourg City. Uncertainties are estimated for both SRTM and LiDAR based models. Probabilistic flood inundation maps are produced under the framework of

  16. tomo3d: a new 3-D joint refraction and reflection travel-time tomography code for active-source seismic data

    Science.gov (United States)

    Meléndez, A.; Korenaga, J.; Sallares, V.; Ranero, C. R.

    2012-12-01

    We present the development state of tomo3d, a code for three-dimensional refraction and reflection travel-time tomography of wide-angle seismic data based on the previous two-dimensional version of the code, tomo2d. The core of both forward and inverse problems is inherited from the 2-D version. The ray tracing is performed by a hybrid method combining the graph and bending methods. The graph method finds an ordered array of discrete model nodes, which satisfies Fermat's principle, that is, whose corresponding travel time is a global minimum within the space of discrete nodal connections. The bending method is then applied to produce a more accurate ray path by using the nodes as support points for an interpolation with beta-splines. Travel time tomography is formulated as an iterative linearized inversion, and each step is solved using an LSQR algorithm. In order to avoid the singularity of the sensitivity kernel and to reduce the instability of inversion, regularization parameters are introduced in the inversion in the form of smoothing and damping constraints. Velocity models are built as 3-D meshes, and velocity values at intermediate locations are obtained by trilinear interpolation within the corresponding pseudo-cubic cell. Meshes are sheared to account for topographic relief. A floating reflector is represented by a 2-D grid, and depths at intermediate locations are calculated by bilinear interpolation within the corresponding square cell. The trade-off between the resolution of the final model and the associated computational cost is controlled by the relation between the selected forward star for the graph method (i.e. the number of nodes that each node considers as its neighbors) and the refinement of the velocity mesh. Including reflected phases is advantageous because it provides a better coverage and allows us to define the geometry of those geological interfaces with velocity contrasts sharp enough to be observed on record sections. The code also

  17. A novel fiber-free technique for brain activity imaging in multiple freely behaving mice

    Science.gov (United States)

    Inagaki, Shigenori; Agetsuma, Masakazu; Nagai, Takeharu

    2018-02-01

    Brain functions and related psychiatric disorders have been investigated by recording electrophysiological field potential. When recording it, a conventional method requires fiber-based apparatus connected to the brain, which however hampers the simultaneous measurement in multiple animals (e.g. by a tangle of fibers). Here, we propose a fiber-free recording technique in conjunction with a ratiometric bioluminescent voltage indicator. Our method allows investigation of electrophysiological filed potential dynamics in multiple freely behaving animals simultaneously over a long time period. Therefore, this fiber-free technique opens up the way to investigate a new mechanism of brain function that governs social behaviors and animal-to-animal interaction.

  18. The Aster code; Code Aster

    Energy Technology Data Exchange (ETDEWEB)

    Delbecq, J.M

    1999-07-01

    The Aster code is a 2D or 3D finite-element calculation code for structures developed by the R and D direction of Electricite de France (EdF). This dossier presents a complete overview of the characteristics and uses of the Aster code: introduction of version 4; the context of Aster (organisation of the code development, versions, systems and interfaces, development tools, quality assurance, independent validation); static mechanics (linear thermo-elasticity, Euler buckling, cables, Zarka-Casier method); non-linear mechanics (materials behaviour, big deformations, specific loads, unloading and loss of load proportionality indicators, global algorithm, contact and friction); rupture mechanics (G energy restitution level, restitution level in thermo-elasto-plasticity, 3D local energy restitution level, KI and KII stress intensity factors, calculation of limit loads for structures), specific treatments (fatigue, rupture, wear, error estimation); meshes and models (mesh generation, modeling, loads and boundary conditions, links between different modeling processes, resolution of linear systems, display of results etc..); vibration mechanics (modal and harmonic analysis, dynamics with shocks, direct transient dynamics, seismic analysis and aleatory dynamics, non-linear dynamics, dynamical sub-structuring); fluid-structure interactions (internal acoustics, mass, rigidity and damping); linear and non-linear thermal analysis; steels and metal industry (structure transformations); coupled problems (internal chaining, internal thermo-hydro-mechanical coupling, chaining with other codes); products and services. (J.S.)

  19. Coding Class

    DEFF Research Database (Denmark)

    Ejsing-Duun, Stine; Hansbøl, Mikala

    Denne rapport rummer evaluering og dokumentation af Coding Class projektet1. Coding Class projektet blev igangsat i skoleåret 2016/2017 af IT-Branchen i samarbejde med en række medlemsvirksomheder, Københavns kommune, Vejle Kommune, Styrelsen for IT- og Læring (STIL) og den frivillige forening...... Coding Pirates2. Rapporten er forfattet af Docent i digitale læringsressourcer og forskningskoordinator for forsknings- og udviklingsmiljøet Digitalisering i Skolen (DiS), Mikala Hansbøl, fra Institut for Skole og Læring ved Professionshøjskolen Metropol; og Lektor i læringsteknologi, interaktionsdesign......, design tænkning og design-pædagogik, Stine Ejsing-Duun fra Forskningslab: It og Læringsdesign (ILD-LAB) ved Institut for kommunikation og psykologi, Aalborg Universitet i København. Vi har fulgt og gennemført evaluering og dokumentation af Coding Class projektet i perioden november 2016 til maj 2017...

  20. Uplink Coding

    Science.gov (United States)

    Andrews, Ken; Divsalar, Dariush; Dolinar, Sam; Moision, Bruce; Hamkins, Jon; Pollara, Fabrizio

    2007-01-01

    This slide presentation reviews the objectives, meeting goals and overall NASA goals for the NASA Data Standards Working Group. The presentation includes information on the technical progress surrounding the objective, short LDPC codes, and the general results on the Pu-Pw tradeoff.

  1. ANIMAL code

    International Nuclear Information System (INIS)

    Lindemuth, I.R.

    1979-01-01

    This report describes ANIMAL, a two-dimensional Eulerian magnetohydrodynamic computer code. ANIMAL's physical model also appears. Formulated are temporal and spatial finite-difference equations in a manner that facilitates implementation of the algorithm. Outlined are the functions of the algorithm's FORTRAN subroutines and variables

  2. Network Coding

    Indian Academy of Sciences (India)

    Home; Journals; Resonance – Journal of Science Education; Volume 15; Issue 7. Network Coding. K V Rashmi Nihar B Shah P Vijay Kumar. General Article Volume 15 Issue 7 July 2010 pp 604-621. Fulltext. Click here to view fulltext PDF. Permanent link: https://www.ias.ac.in/article/fulltext/reso/015/07/0604-0621 ...

  3. MCNP code

    International Nuclear Information System (INIS)

    Cramer, S.N.

    1984-01-01

    The MCNP code is the major Monte Carlo coupled neutron-photon transport research tool at the Los Alamos National Laboratory, and it represents the most extensive Monte Carlo development program in the United States which is available in the public domain. The present code is the direct descendent of the original Monte Carlo work of Fermi, von Neumaum, and Ulam at Los Alamos in the 1940s. Development has continued uninterrupted since that time, and the current version of MCNP (or its predecessors) has always included state-of-the-art methods in the Monte Carlo simulation of radiation transport, basic cross section data, geometry capability, variance reduction, and estimation procedures. The authors of the present code have oriented its development toward general user application. The documentation, though extensive, is presented in a clear and simple manner with many examples, illustrations, and sample problems. In addition to providing the desired results, the output listings give a a wealth of detailed information (some optional) concerning each state of the calculation. The code system is continually updated to take advantage of advances in computer hardware and software, including interactive modes of operation, diagnostic interrupts and restarts, and a variety of graphical and video aids

  4. Expander Codes

    Indian Academy of Sciences (India)

    Home; Journals; Resonance – Journal of Science Education; Volume 10; Issue 1. Expander Codes - The Sipser–Spielman Construction. Priti Shankar. General Article Volume 10 ... Author Affiliations. Priti Shankar1. Department of Computer Science and Automation, Indian Institute of Science Bangalore 560 012, India.

  5. Revised SRAC code system

    International Nuclear Information System (INIS)

    Tsuchihashi, Keichiro; Ishiguro, Yukio; Kaneko, Kunio; Ido, Masaru.

    1986-09-01

    Since the publication of JAERI-1285 in 1983 for the preliminary version of the SRAC code system, a number of additions and modifications to the functions have been made to establish an overall neutronics code system. Major points are (1) addition of JENDL-2 version of data library, (2) a direct treatment of doubly heterogeneous effect on resonance absorption, (3) a generalized Dancoff factor, (4) a cell calculation based on the fixed boundary source problem, (5) the corresponding edit required for experimental analysis and reactor design, (6) a perturbation theory calculation for reactivity change, (7) an auxiliary code for core burnup and fuel management, etc. This report is a revision of the users manual which consists of the general description, input data requirements and their explanation, detailed information on usage, mathematics, contents of libraries and sample I/O. (author)

  6. High channel count microphone array accurately and precisely localizes ultrasonic signals from freely-moving mice.

    Science.gov (United States)

    Warren, Megan R; Sangiamo, Daniel T; Neunuebel, Joshua P

    2018-03-01

    An integral component in the assessment of vocal behavior in groups of freely interacting animals is the ability to determine which animal is producing each vocal signal. This process is facilitated by using microphone arrays with multiple channels. Here, we made important refinements to a state-of-the-art microphone array based system used to localize vocal signals produced by freely interacting laboratory mice. Key changes to the system included increasing the number of microphones as well as refining the methodology for localizing and assigning vocal signals to individual mice. We systematically demonstrate that the improvements in the methodology for localizing mouse vocal signals led to an increase in the number of signals detected as well as the number of signals accurately assigned to an animal. These changes facilitated the acquisition of larger and more comprehensive data sets that better represent the vocal activity within an experiment. Furthermore, this system will allow more thorough analyses of the role that vocal signals play in social communication. We expect that such advances will broaden our understanding of social communication deficits in mouse models of neurological disorders. Copyright © 2018 Elsevier B.V. All rights reserved.

  7. A portable telemetry system for brain stimulation and neuronal activity recording in freely behaving small animals.

    Science.gov (United States)

    Ye, Xuesong; Wang, Peng; Liu, Jun; Zhang, Shaomin; Jiang, Jun; Wang, Qingbo; Chen, Weidong; Zheng, Xiaoxiang

    2008-09-30

    A portable multi-channel telemetry system which can be used for brain stimulation and neuronal activity recording in freely behaving small animals is described here. This system consists of three major components of headstage, backpack and portable Personal Digital Assistant (PDA). The headstage contains high precision instrument amplifiers with high input impedance. The backpack is comprised of two parts: (1) a main board (size: 36 mm x 22 mm x 3.5 mm and weight: 40 g with batteries, 20 g without), with current/voltage stimulator and special circuit suitable for neuronal activity recording and (2) and a bluetooth transceiver, with a high data transmission rate up to 70 kb/s, suitable for downloading stimulation commands and uploading acquired data. We recorded neuronal activities of the primary motor area of a freely behaving rat with 12-bit resolution at 12 k samples/s. The recorded data and analysis results showed that the system was successful by comparing with the commercial equipment Cerebus 128-Channel Data Acquisition System (Cyberkinetics Inc.). Using the PDA, we can control stimulation and recording. It provides a flexible method to do some research work in the circumstances where other approaches would be difficult or impossible.

  8. A Novel and Freely Available Interactive 3d Model of the Internal Carotid Artery.

    Science.gov (United States)

    Valera-Melé, Marc; Puigdellívol-Sánchez, Anna; Mavar-Haramija, Marija; Juanes-Méndez, Juan A; San-Román, Luis; de Notaris, Matteo; Prats-Galino, Alberto

    2018-03-05

    We describe a new and freely available 3D interactive model of the intracranial internal carotid artery (ICA) and the skull base that also allows to display and compare its main segment classifications. High-resolution 3D human angiography (isometric voxel's size 0.36 mm) and Computed Tomography angiography images were exported to Virtual Reality Modeling Language (VRML) format for processing in a 3D software platform and embedding in a 3D Portable Document Format (PDF) document that can be freely downloaded at http://diposit.ub.edu/dspace/handle/2445/112442 and runs under Acrobat Reader on Mac and Windows computers and Windows 10 tablets. The 3D-PDF allows for visualisation and interaction through JavaScript-based functions (including zoom, rotation, selective visualization and transparentation of structures or a predefined sequence view of the main segment classifications if desired). The ICA and its main branches and loops, the Gasserian ganglion, the petrolingual ligament and the proximal and distal dural rings within the skull base environment (anterior and posterior clinoid processes, silla turcica, ethmoid and sphenoid bones, orbital fossae) may be visualized from different perspectives. This interactive 3D-PDF provides virtual views of the ICA and becomes an innovative tool to improve the understanding of the neuroanatomy of the ICA and surrounding structures.

  9. Using the Visualization Software Evaluation Rubric to explore six freely available visualization applications

    Directory of Open Access Journals (Sweden)

    Thea P. Atwood

    2018-01-01

    Full Text Available Objective: As a variety of visualization tools become available to librarians and researchers, it can be challenging to select a tool that is robust and flexible enough to provide the desired visualization outcomes for work or personal use. In this article, the authors provide guidance on several freely available tools, and offer a rubric for use in evaluating visualization tools. Methods: A rubric was generated to assist the authors in assessing the selected six freely available visualization tools. Each author analyzed three tools, and discussed the differences, similarities, challenges, and successes of each. Results: Of the six visualization tools, two tools emerged with high marks. The authors found that the rubric was a successful evaluation tool, and facilitated discussion on the strengths and weaknesses of the six selected visualization pieces of software. Conclusions: Of the six different visualization tools analyzed, all had different functions and features available to best meet the needs of users. In a situation where there are many options available, and it is difficult at first glance to determine a clear winner, a rubric can be useful in providing a method to quickly assess and communicate the effectiveness of a tool.

  10. Calculating Puerto Rico’s Ecological Footprint (1970–2010 Using Freely Available Data

    Directory of Open Access Journals (Sweden)

    Matthew E. Hopton

    2015-07-01

    Full Text Available Ecological Footprint Analysis (EFA is appealing as a metric of sustainability because it is straightforward in theory and easy to conceptualize. However, EFA is difficult to implement because it requires extensive data. A simplified approach to EFA that requires fewer data can serve as a perfunctory analysis allowing researchers to examine a system with relatively little cost and effort. We examined whether a simplified approach using freely available data could be applied to Puerto Rico, a densely populated island with limited land resources. Forty-one years of data were assembled to compute the ecological footprint from 1970 to 2010. According to EFA, individuals in Puerto Rico were moving toward sustainability over time, as the per capita ecological footprint decreased from 3.69 ha per capita (ha/ca in 1970 to 3.05 ha/ca in 2010. However, due to population growth, the population’s footprint rose from 1.00 × 107 ha in 1970 to 1.14 × 107 ha in 2010, indicating Puerto Rico as a whole was moving away from sustainability. Our findings demonstrate the promise for conducting EFA using a simplified approach with freely available data, and we discuss potential limitations on data quality and availability that should be addressed to further improve the science.

  11. Continuous Force Decoding from Local Field Potentials of the Primary Motor Cortex in Freely Moving Rats.

    Science.gov (United States)

    Khorasani, Abed; Heydari Beni, Nargess; Shalchyan, Vahid; Daliri, Mohammad Reza

    2016-10-21

    Local field potential (LFP) signals recorded by intracortical microelectrodes implanted in primary motor cortex can be used as a high informative input for decoding of motor functions. Recent studies show that different kinematic parameters such as position and velocity can be inferred from multiple LFP signals as precisely as spiking activities, however, continuous decoding of the force magnitude from the LFP signals in freely moving animals has remained an open problem. Here, we trained three rats to press a force sensor for getting a drop of water as a reward. A 16-channel micro-wire array was implanted in the primary motor cortex of each trained rat, and obtained LFP signals were used for decoding of the continuous values recorded by the force sensor. Average coefficient of correlation and the coefficient of determination between decoded and actual force signals were r = 0.66 and R 2  = 0.42, respectively. We found that LFP signal on gamma frequency bands (30-120 Hz) had the most contribution in the trained decoding model. This study suggests the feasibility of using low number of LFP channels for the continuous force decoding in freely moving animals resembling BMI systems in real life applications.

  12. Fundamentals of information theory and coding design

    CERN Document Server

    Togneri, Roberto

    2003-01-01

    In a clear, concise, and modular format, this book introduces the fundamental concepts and mathematics of information and coding theory. The authors emphasize how a code is designed and discuss the main properties and characteristics of different coding algorithms along with strategies for selecting the appropriate codes to meet specific requirements. They provide comprehensive coverage of source and channel coding, address arithmetic, BCH, and Reed-Solomon codes and explore some more advanced topics such as PPM compression and turbo codes. Worked examples and sets of basic and advanced exercises in each chapter reinforce the text's clear explanations of all concepts and methodologies.

  13. Monte Carlo calculation for the development of a BNCT neutron source (1eV-10KeV) using MCNP code.

    Science.gov (United States)

    El Moussaoui, F; El Bardouni, T; Azahra, M; Kamili, A; Boukhal, H

    2008-09-01

    Different materials have been studied in order to produce the epithermal neutron beam between 1eV and 10KeV, which are extensively used to irradiate patients with brain tumors such as GBM. For this purpose, we have studied three different neutrons moderators (H(2)O, D(2)O and BeO) and their combinations, four reflectors (Al(2)O(3), C, Bi, and Pb) and two filters (Cd and Bi). Results of calculation showed that the best obtained assembly configuration corresponds to the combination of the three moderators H(2)O, BeO and D(2)O jointly to Al(2)O(3) reflector and two filter Cd+Bi optimize the spectrum of the epithermal neutron at 72%, and minimize the thermal neutron to 4% and thus it can be used to treat the deep tumor brain. The calculations have been performed by means of the Monte Carlo N (particle code MCNP 5C). Our results strongly encourage further studying of irradiation of the head with epithermal neutron fields.

  14. Panda code

    International Nuclear Information System (INIS)

    Altomare, S.; Minton, G.

    1975-02-01

    PANDA is a new two-group one-dimensional (slab/cylinder) neutron diffusion code designed to replace and extend the FAB series. PANDA allows for the nonlinear effects of xenon, enthalpy and Doppler. Fuel depletion is allowed. PANDA has a completely general search facility which will seek criticality, maximize reactivity, or minimize peaking. Any single parameter may be varied in a search. PANDA is written in FORTRAN IV, and as such is nearly machine independent. However, PANDA has been written with the present limitations of the Westinghouse CDC-6600 system in mind. Most computation loops are very short, and the code is less than half the useful 6600 memory size so that two jobs can reside in the core at once. (auth)

  15. SKEMA - A computer code to estimate atmospheric dispersion

    International Nuclear Information System (INIS)

    Sacramento, A.M. do.

    1985-01-01

    This computer code is a modified version of DWNWND code, developed in Oak Ridge National Laboratory. The Skema code makes an estimative of concentration in air of a material released in atmosphery, by ponctual source. (C.M.) [pt

  16. CANAL code

    International Nuclear Information System (INIS)

    Gara, P.; Martin, E.

    1983-01-01

    The CANAL code presented here optimizes a realistic iron free extraction channel which has to provide a given transversal magnetic field law in the median plane: the current bars may be curved, have finite lengths and cooling ducts and move in a restricted transversal area; terminal connectors may be added, images of the bars in pole pieces may be included. A special option optimizes a real set of circular coils [fr

  17. QUANTUM ESPRESSO: a modular and open-source software project for quantum simulations of materials.

    Science.gov (United States)

    Giannozzi, Paolo; Baroni, Stefano; Bonini, Nicola; Calandra, Matteo; Car, Roberto; Cavazzoni, Carlo; Ceresoli, Davide; Chiarotti, Guido L; Cococcioni, Matteo; Dabo, Ismaila; Dal Corso, Andrea; de Gironcoli, Stefano; Fabris, Stefano; Fratesi, Guido; Gebauer, Ralph; Gerstmann, Uwe; Gougoussis, Christos; Kokalj, Anton; Lazzeri, Michele; Martin-Samos, Layla; Marzari, Nicola; Mauri, Francesco; Mazzarello, Riccardo; Paolini, Stefano; Pasquarello, Alfredo; Paulatto, Lorenzo; Sbraccia, Carlo; Scandolo, Sandro; Sclauzero, Gabriele; Seitsonen, Ari P; Smogunov, Alexander; Umari, Paolo; Wentzcovitch, Renata M

    2009-09-30

    QUANTUM ESPRESSO is an integrated suite of computer codes for electronic-structure calculations and materials modeling, based on density-functional theory, plane waves, and pseudopotentials (norm-conserving, ultrasoft, and projector-augmented wave). The acronym ESPRESSO stands for opEn Source Package for Research in Electronic Structure, Simulation, and Optimization. It is freely available to researchers around the world under the terms of the GNU General Public License. QUANTUM ESPRESSO builds upon newly-restructured electronic-structure codes that have been developed and tested by some of the original authors of novel electronic-structure algorithms and applied in the last twenty years by some of the leading materials modeling groups worldwide. Innovation and efficiency are still its main focus, with special attention paid to massively parallel architectures, and a great effort being devoted to user friendliness. QUANTUM ESPRESSO is evolving towards a distribution of independent and interoperable codes in the spirit of an open-source project, where researchers active in the field of electronic-structure calculations are encouraged to participate in the project by contributing their own codes or by implementing their own ideas into existing codes.

  18. Determination of the multiplication factor and its bias by the 252Cf-source technique: A method for code benchmarking with subcritical configurations

    International Nuclear Information System (INIS)

    Perez, R.B.; Valentine, T.E.; Mihalczo, J.T.; Mattingly, J.K.

    1997-01-01

    A brief discussion of the Cf-252 source driven method for subcritical measurements serves as an introduction to the concept and use of the spectral ratio, Γ. It has also been shown that the Monte Carlo calculation of spectral densities and effective multiplication factors have as a common denominator the transport propagator. This commonality follows from the fact that the Neumann series expansion of the propagator lends itself to the Monte Carlo method. On this basis a linear relationship between the spectral ratio and the effective multiplication factor has been shown. This relationship demonstrates the ability of subcritical measurements of the ratio of spectral densities to validate transport theory methods and cross sections

  19. Code of Practice

    International Nuclear Information System (INIS)

    Doyle, Colin; Hone, Christopher; Nowlan, N.V.

    1984-05-01

    This Code of Practice introduces accepted safety procedures associated with the use of alpha, beta, gamma and X-radiation in secondary schools (pupils aged 12 to 18) in Ireland, and summarises good practice and procedures as they apply to radiation protection. Typical dose rates at various distances from sealed sources are quoted, and simplified equations are used to demonstrate dose and shielding calculations. The regulatory aspects of radiation protection are outlined, and references to statutory documents are given

  20. Multispot single-molecule FRET: High-throughput analysis of freely diffusing molecules.

    Directory of Open Access Journals (Sweden)

    Antonino Ingargiola

    Full Text Available We describe an 8-spot confocal setup for high-throughput smFRET assays and illustrate its performance with two characteristic experiments. First, measurements on a series of freely diffusing doubly-labeled dsDNA samples allow us to demonstrate that data acquired in multiple spots in parallel can be properly corrected and result in measured sample characteristics consistent with those obtained with a standard single-spot setup. We then take advantage of the higher throughput provided by parallel acquisition to address an outstanding question about the kinetics of the initial steps of bacterial RNA transcription. Our real-time kinetic analysis of promoter escape by bacterial RNA polymerase confirms results obtained by a more indirect route, shedding additional light on the initial steps of transcription. Finally, we discuss the advantages of our multispot setup, while pointing potential limitations of the current single laser excitation design, as well as analysis challenges and their solutions.

  1. Effect of atropine or atenolol on cardiovascular responses to novelty stress in freely-moving rats.

    Science.gov (United States)

    van den Buuse, Maarten

    2002-09-01

    Cardiac hemodynamic mechanisms involved in cardiovascular responses to stress were studied in conscious, freely-moving female spontaneously hypertensive rats exposed for 15 min to an open-field. When pretreated with saline, the rats displayed a rapid rise in blood pressure, heart rate, aortic dP/dt and locomotor activity. In rats pretreated with 0.5 mg/kg of methylatropine, the tachycardia was slightly, but significantly reduced. In rats pretreated with 1 mg/kg of atenolol, the tachycardis and rise in dP/dt were markedly reduced. These data suggest that the cardiac responses to stress include predominantly cardiac sympathetic activation and a minor component of vagal withdrawal.

  2. A freely-available authoring system for browser-based CALL with speech recognition

    Directory of Open Access Journals (Sweden)

    Myles O'Brien

    2017-06-01

    Full Text Available A system for authoring browser-based CALL material incorporating Google speech recognition has been developed and made freely available for download. The system provides a teacher with a simple way to set up CALL material, including an optional image, sound or video, which will elicit spoken (and/or typed answers from the user and check them against a list of specified permitted answers, giving feedback with hints when necessary. The teacher needs no HTML or Javascript expertise, just the facilities and ability to edit text files and upload to the Internet. The structure and functioning of the system are explained in detail, and some suggestions are given for practical use. Finally, some of its limitations are described.

  3. The gravitational wave spectrum of non-axisymmetric, freely precessing neutron stars

    International Nuclear Information System (INIS)

    Broeck, Chris van den

    2005-01-01

    Evidence for free precession has been observed in the radio signature of several pulsars. Freely precessing pulsars radiate gravitationally at frequencies near the rotation rate and twice the rotation rate, which for rotation frequencies greater than ∼10 Hz is in the LIGO band. In older work, the gravitational wave spectrum of a precessing neutron star has been evaluated to first order in a small precession angle. Here, we calculate the contributions to second order in the wobble angle, and we find that a new spectral line emerges. We show that for reasonable wobble angles, the second-order line may well be observable with the proposed advanced LIGO detectors for precessing neutron stars as far away as the galactic centre. Observation of the full second-order spectrum permits a direct measurement of the star's wobble angle, oblateness and deviation from axisymmetry, with the potential to significantly increase our understanding of neutron star structure

  4. Exploration of freely available web-interfaces for comparative homology modelling of microbial proteins.

    Science.gov (United States)

    Nema, Vijay; Pal, Sudhir Kumar

    2013-01-01

    This study was conducted to find the best suited freely available software for modelling of proteins by taking a few sample proteins. The proteins used were small to big in size with available crystal structures for the purpose of benchmarking. Key players like Phyre2, Swiss-Model, CPHmodels-3.0, Homer, (PS)2, (PS)(2)-V(2), Modweb were used for the comparison and model generation. Benchmarking process was done for four proteins, Icl, InhA, and KatG of Mycobacterium tuberculosis and RpoB of Thermus Thermophilus to get the most suited software. Parameters compared during analysis gave relatively better values for Phyre2 and Swiss-Model. This comparative study gave the information that Phyre2 and Swiss-Model make good models of small and large proteins as compared to other screened software. Other software was also good but is often not very efficient in providing full-length and properly folded structure.

  5. The organization of prospective thinking: evidence of event clusters in freely generated future thoughts.

    Science.gov (United States)

    Demblon, Julie; D'Argembeau, Arnaud

    2014-02-01

    Recent research suggests that many imagined future events are not represented in isolation, but instead are embedded in broader event sequences-referred to as event clusters. It remains unclear, however, whether the production of event clusters reflects the underlying organizational structure of prospective thinking or whether it is an artifact of the event-cuing task in which participants are explicitly required to provide chains of associated future events. To address this issue, the present study examined whether the occurrence of event clusters in prospective thought is apparent when people are left to think freely about events that might happen in their personal future. The results showed that the succession of events participants spontaneously produced when envisioning their future frequently included event clusters. This finding provides more compelling evidence that prospective thinking involves higher-order autobiographical knowledge structures that organize imagined events in coherent themes and sequences. Copyright © 2014 Elsevier Inc. All rights reserved.

  6. The olfactory bulb theta rhythm follows all frequencies of diaphragmatic respiration in the freely behaving rat

    Directory of Open Access Journals (Sweden)

    Daniel eRojas-Líbano

    2014-06-01

    Full Text Available Sensory-motor relationships are part of the normal operation of sensory systems. Sensing occurs in the context of active sensor movement, which in turn influences sensory processing. We address such a process in the rat olfactory system. Through recordings of the diaphragm electromyogram (EMG, we monitored the motor output of the respiratory circuit involved in sniffing behavior, simultaneously with the local field potential (LFP of the olfactory bulb (OB in rats moving freely in a familiar environment, where they display a wide range of respiratory frequencies. We show that the OB LFP represents the sniff cycle with high reliability at every sniff frequency and can therefore be used to study the neural representation of motor drive in a sensory cortex.

  7. Attenuation correction for freely moving small animal brain PET studies based on a virtual scanner geometry

    International Nuclear Information System (INIS)

    Angelis, G I; Kyme, A Z; Ryder, W J; Fulton, R R; Meikle, S R

    2014-01-01

    Attenuation correction in positron emission tomography brain imaging of freely moving animals is a very challenging problem since the torso of the animal is often within the field of view and introduces a non negligible attenuating factor that can degrade the quantitative accuracy of the reconstructed images. In the context of unrestrained small animal imaging, estimation of the attenuation correction factors without the need for a transmission scan is highly desirable. An attractive approach that avoids the need for a transmission scan involves the generation of the hull of the animal’s head based on the reconstructed motion corrected emission images. However, this approach ignores the attenuation introduced by the animal’s torso. In this work, we propose a virtual scanner geometry which moves in synchrony with the animal’s head and discriminates between those events that traversed only the animal’s head (and therefore can be accurately compensated for attenuation) and those that might have also traversed the animal’s torso. For each recorded pose of the animal’s head a new virtual scanner geometry is defined and therefore a new system matrix must be calculated leading to a time-varying system matrix. This new approach was evaluated on phantom data acquired on the microPET Focus 220 scanner using a custom-made phantom and step-wise motion. Results showed that when the animal’s torso is within the FOV and not appropriately accounted for during attenuation correction it can lead to bias of up to 10% . Attenuation correction was more accurate when the virtual scanner was employed leading to improved quantitative estimates (bias < 2%), without the need to account for the attenuation introduced by the extraneous compartment. Although the proposed method requires increased computational resources, it can provide a reliable approach towards quantitatively accurate attenuation correction for freely moving animal studies. (paper)

  8. An Ambulatory Electroencephalography System for Freely Moving Horses: An Innovating Approach

    Directory of Open Access Journals (Sweden)

    Hugo Cousillas

    2017-05-01

    Full Text Available Electroencephalography (EEG that has been extensively studied in humans presents also a large interest for studies on animal brain processes. However, since the quality of the recordings is altered by muscular activity, most EEG recordings on animals are obtained using invasive methods with deeply implanted electrodes. This requires anesthesia and can thus only be used in laboratory or clinical settings. As EEG is a very useful tool both for detecting brain alterations due to diseases or accidents and to evaluate the arousal and attentional state of the animal, it seemed crucial to develop a tool that would make such recordings possible in the horse’s home environment, with a freely moving horse. Such a tool should neither be invasive nor cause discomforts to the horse as the usual other practice which consists, after shaving the zone, in gluing the electrodes to the skin. To fulfill these requirements, we developed a novel EEG headset adapted to the horse’s head that allows an easy and fast positioning of the electrodes and that can be used in the home environment on a freely moving horse. In this study, we show that this EEG headset allows to obtain reliable recordings, and we propose an original evaluation of an animal’s “EEG profile” that allows comparisons between individuals and situations. This EEG headset opens new possibilities of investigation on horse cognition, and it can also become a useful tool for veterinarians to evaluate cerebral disorders or check the anesthesia level during a surgery.

  9. Rodent scope: a user-configurable digital wireless telemetry system for freely behaving animals.

    Directory of Open Access Journals (Sweden)

    David Ball

    Full Text Available This paper describes the design and implementation of a wireless neural telemetry system that enables new experimental paradigms, such as neural recordings during rodent navigation in large outdoor environments. RoSco, short for Rodent Scope, is a small lightweight user-configurable module suitable for digital wireless recording from freely behaving small animals. Due to the digital transmission technology, RoSco has advantages over most other wireless modules of noise immunity and online user-configurable settings. RoSco digitally transmits entire neural waveforms for 14 of 16 channels at 20 kHz with 8-bit encoding which are streamed to the PC as standard USB audio packets. Up to 31 RoSco wireless modules can coexist in the same environment on non-overlapping independent channels. The design has spatial diversity reception via two antennas, which makes wireless communication resilient to fading and obstacles. In comparison with most existing wireless systems, this system has online user-selectable independent gain control of each channel in 8 factors from 500 to 32,000 times, two selectable ground references from a subset of channels, selectable channel grounding to disable noisy electrodes, and selectable bandwidth suitable for action potentials (300 Hz-3 kHz and low frequency field potentials (4 Hz-3 kHz. Indoor and outdoor recordings taken from freely behaving rodents are shown to be comparable to a commercial wired system in sorting for neural populations. The module has low input referred noise, battery life of 1.5 hours and transmission losses of 0.1% up to a range of 10 m.

  10. A new rapid kindling variant for induction of cortical epileptogenesis in freely moving rats

    Directory of Open Access Journals (Sweden)

    Juan Carlos Morales

    2014-07-01

    Full Text Available Kindling, one of the most used models of experimental epilepsy is based on daily electrical stimulation in several brain structures. Unlike the classic or slow kindling protocols (SK, the rapid kindling types (RK described until now require continuous stimulation at suprathreshold intensities applied directly to the same brain structure used for subsequent electrophysiological and inmunohistochemical studies, usually the hippocampus. However, the cellular changes observed in these rapid protocols, such as astrogliosis and neuronal loss, could be due to experimental manipulation more than to epileptogenesis-related alterations. Here, we developed a new RK protocol in order to generate an improved model of temporal lobe epilepsy (TLE which allows gradual progression of the epilepsy as well as obtaining an epileptic hippocampus, thus avoiding direct surgical manipulation and electric stimulation over this structure. This new protocol consists of basolateral amygdala (BLA stimulation with 10 trains of biphasic pulses (10s;50Hz per day with 20 minutes-intervals, during 3 consecutive days, using a subconvulsive and subthreshold intensity, which guarantees tissue integrity. The progression of epileptic activity was evaluated in freely moving rats through EEG recordings from cortex and amygdala, accompanied with synchronized video recordings. Moreover, we assessed the effectiveness of RK protocol and the establishment of epilepsy by evaluating cellular alterations of hippocampal slices from kindled rats. RK protocol induced convulsive states similar to SK protocols but in 3 days, with persistently lowered threshold to seizure induction and epileptogenic-dependent cellular changes in amygdala projection areas. We concluded that this novel RK protocol introduces a new variant of the chronic epileptogenesis models in freely moving rats, which is faster, highly reproducible and causes minimum cell damage with respect to that observed in other experimental

  11. GABAergic inhibition of leg motoneurons is required for normal walking behavior in freely moving Drosophila.

    Science.gov (United States)

    Gowda, Swetha B M; Paranjpe, Pushkar D; Reddy, O Venkateswara; Thiagarajan, Devasena; Palliyil, Sudhir; Reichert, Heinrich; VijayRaghavan, K

    2018-02-27

    Walking is a complex rhythmic locomotor behavior generated by sequential and periodical contraction of muscles essential for coordinated control of movements of legs and leg joints. Studies of walking in vertebrates and invertebrates have revealed that premotor neural circuitry generates a basic rhythmic pattern that is sculpted by sensory feedback and ultimately controls the amplitude and phase of the motor output to leg muscles. However, the identity and functional roles of the premotor interneurons that directly control leg motoneuron activity are poorly understood. Here we take advantage of the powerful genetic methodology available in Drosophila to investigate the role of premotor inhibition in walking by genetically suppressing inhibitory input to leg motoneurons. For this, we have developed an algorithm for automated analysis of leg motion to characterize the walking parameters of wild-type flies from high-speed video recordings. Further, we use genetic reagents for targeted RNAi knockdown of inhibitory neurotransmitter receptors in leg motoneurons together with quantitative analysis of resulting changes in leg movement parameters in freely walking Drosophila Our findings indicate that targeted down-regulation of the GABA A receptor Rdl (Resistance to Dieldrin) in leg motoneurons results in a dramatic reduction of walking speed and step length without the loss of general leg coordination during locomotion. Genetically restricting the knockdown to the adult stage and subsets of motoneurons yields qualitatively identical results. Taken together, these findings identify GABAergic premotor inhibition of motoneurons as an important determinant of correctly coordinated leg movements and speed of walking in freely behaving Drosophila . Copyright © 2018 the Author(s). Published by PNAS.

  12. Wireless multi-channel single unit recording in freely moving and vocalizing primates.

    Science.gov (United States)

    Roy, Sabyasachi; Wang, Xiaoqin

    2012-01-15

    The ability to record well-isolated action potentials from individual neurons in naturally behaving animals is crucial for understanding neural mechanisms underlying natural behaviors. Traditional neurophysiology techniques, however, require the animal to be restrained which often restricts natural behavior. An example is the common marmoset (Callithrix jacchus), a highly vocal New World primate species, used in our laboratory to study the neural correlates of vocal production and sensory feedback. When restrained by traditional neurophysiological techniques marmoset vocal behavior is severely inhibited. Tethered recording systems, while proven effective in rodents pose limitations in arboreal animals such as the marmoset that typically roam in a three-dimensional environment. To overcome these obstacles, we have developed a wireless neural recording technique that is capable of collecting single-unit data from chronically implanted multi-electrodes in freely moving marmosets. A lightweight, low power and low noise wireless transmitter (headstage) is attached to a multi-electrode array placed in the premotor cortex of the marmoset. The wireless headstage is capable of transmitting 15 channels of neural data with signal-to-noise ratio (SNR) comparable to a tethered system. To minimize radio-frequency (RF) and electro-magnetic interference (EMI), the experiments were conducted within a custom designed RF/EMI and acoustically shielded chamber. The individual electrodes of the multi-electrode array were periodically advanced to densely sample the cortical layers. We recorded single-unit data over a period of several months from the frontal cortex of two marmosets. These recordings demonstrate the feasibility of using our wireless recording method to study single neuron activity in freely roaming primates. Copyright © 2011 Elsevier B.V. All rights reserved.

  13. Freely-available, true-color volume rendering software and cryohistology data sets for virtual exploration of the temporal bone anatomy.

    Science.gov (United States)

    Kahrs, Lüder Alexander; Labadie, Robert Frederick

    2013-01-01

    Cadaveric dissection of temporal bone anatomy is not always possible or feasible in certain educational environments. Volume rendering using CT and/or MRI helps understanding spatial relationships, but they suffer in nonrealistic depictions especially regarding color of anatomical structures. Freely available, nonstained histological data sets and software which are able to render such data sets in realistic color could overcome this limitation and be a very effective teaching tool. With recent availability of specialized public-domain software, volume rendering of true-color, histological data sets is now possible. We present both feasibility as well as step-by-step instructions to allow processing of publicly available data sets (Visible Female Human and Visible Ear) into easily navigable 3-dimensional models using free software. Example renderings are shown to demonstrate the utility of these free methods in virtual exploration of the complex anatomy of the temporal bone. After exploring the data sets, the Visible Ear appears more natural than the Visible Human. We provide directions for an easy-to-use, open-source software in conjunction with freely available histological data sets. This work facilitates self-education of spatial relationships of anatomical structures inside the human temporal bone as well as it allows exploration of surgical approaches prior to cadaveric testing and/or clinical implementation. Copyright © 2013 S. Karger AG, Basel.

  14. Dynamic benchmarking of simulation codes

    International Nuclear Information System (INIS)

    Henry, R.E.; Paik, C.Y.; Hauser, G.M.

    1996-01-01

    Computer simulation of nuclear power plant response can be a full-scope control room simulator, an engineering simulator to represent the general behavior of the plant under normal and abnormal conditions, or the modeling of the plant response to conditions that would eventually lead to core damage. In any of these, the underlying foundation for their use in analysing situations, training of vendor/utility personnel, etc. is how well they represent what has been known from industrial experience, large integral experiments and separate effects tests. Typically, simulation codes are benchmarked with some of these; the level of agreement necessary being dependent upon the ultimate use of the simulation tool. However, these analytical models are computer codes, and as a result, the capabilities are continually enhanced, errors are corrected, new situations are imposed on the code that are outside of the original design basis, etc. Consequently, there is a continual need to assure that the benchmarks with important transients are preserved as the computer code evolves. Retention of this benchmarking capability is essential to develop trust in the computer code. Given the evolving world of computer codes, how is this retention of benchmarking capabilities accomplished? For the MAAP4 codes this capability is accomplished through a 'dynamic benchmarking' feature embedded in the source code. In particular, a set of dynamic benchmarks are included in the source code and these are exercised every time the archive codes are upgraded and distributed to the MAAP users. Three different types of dynamic benchmarks are used: plant transients; large integral experiments; and separate effects tests. Each of these is performed in a different manner. The first is accomplished by developing a parameter file for the plant modeled and an input deck to describe the sequence; i.e. the entire MAAP4 code is exercised. The pertinent plant data is included in the source code and the computer

  15. From concatenated codes to graph codes

    DEFF Research Database (Denmark)

    Justesen, Jørn; Høholdt, Tom

    2004-01-01

    We consider codes based on simple bipartite expander graphs. These codes may be seen as the first step leading from product type concatenated codes to more complex graph codes. We emphasize constructions of specific codes of realistic lengths, and study the details of decoding by message passing...

  16. QuaDoSta - a freely configurable system which facilitates multi-centric data collection for healthcare and medical research

    Directory of Open Access Journals (Sweden)

    Albrecht, Ulrike

    2007-07-01

    Full Text Available This article describes QuaDoSta (quality assurance, documentation and statistics, a flexible documentation system as well as a data collection and networking platform for medical facilities. The user can freely define the required documentation masks which are easily expandable and can be adapted to individual requirements without the need for additional programming. To avoid duplication, data transfer interfaces can be configured flexibly to external sources such as patient management systems used in surgeries or hospital information systems. The projects EvaMed (Evaluation Anthroposophical Medicine and the Network Oncology are two scientific research projects which have been successfully established as nationally active networks on the basis of QuaDoSta. The EvaMed-Network serves as a modern pharmacovigilance project for the documentation of adverse drug events. All prescription data are electronically recorded to assess the relative risk of drugs. The Network Oncology was set up as a documentation system in four hospitals and seven specialist oncology practices where a complete record of all oncological therapies is being carried out to uniform standards on the basis of the ‘basic documentation for tumour patients’ (BDT developed by the German Cancer Society. The QuaDoSta solution system made it possible to cater for the specific requirements of the presented projects. The following features of the system proved to be highly advantageous: flexible setup of catalogues and user friendly customisation and extensions, complete dissociation of system setup and documentation content, multi-centre networkability, and configurable data transfer interfaces.

  17. Amino acid fermentation at the origin of the genetic code

    Directory of Open Access Journals (Sweden)

    de Vladar Harold P

    2012-02-01

    Full Text Available Abstract There is evidence that the genetic code was established prior to the existence of proteins, when metabolism was powered by ribozymes. Also, early proto-organisms had to rely on simple anaerobic bioenergetic processes. In this work I propose that amino acid fermentation powered metabolism in the RNA world, and that this was facilitated by proto-adapters, the precursors of the tRNAs. Amino acids were used as carbon sources rather than as catalytic or structural elements. In modern bacteria, amino acid fermentation is known as the Stickland reaction. This pathway involves two amino acids: the first undergoes oxidative deamination, and the second acts as an electron acceptor through reductive deamination. This redox reaction results in two keto acids that are employed to synthesise ATP via substrate-level phosphorylation. The Stickland reaction is the basic bioenergetic pathway of some bacteria of the genus Clostridium. Two other facts support Stickland fermentation in the RNA world. First, several Stickland amino acid pairs are synthesised in abiotic amino acid synthesis. This suggests that amino acids that could be used as an energy substrate were freely available. Second, anticodons that have complementary sequences often correspond to amino acids that form Stickland pairs. The main hypothesis of this paper is that pairs of complementary proto-adapters were assigned to Stickland amino acids pairs. There are signatures of this hypothesis in the genetic code. Furthermore, it is argued that the proto-adapters formed double strands that brought amino acid pairs into proximity to facilitate their mutual redox reaction, structurally constraining the anticodon pairs that are assigned to these amino acid pairs. Significance tests which randomise the code are performed to study the extent of the variability of the energetic (ATP yield. Random assignments can lead to a substantial yield of ATP and maintain enough variability, thus selection can

  18. Amino acid fermentation at the origin of the genetic code.

    Science.gov (United States)

    de Vladar, Harold P

    2012-02-10

    There is evidence that the genetic code was established prior to the existence of proteins, when metabolism was powered by ribozymes. Also, early proto-organisms had to rely on simple anaerobic bioenergetic processes. In this work I propose that amino acid fermentation powered metabolism in the RNA world, and that this was facilitated by proto-adapters, the precursors of the tRNAs. Amino acids were used as carbon sources rather than as catalytic or structural elements. In modern bacteria, amino acid fermentation is known as the Stickland reaction. This pathway involves two amino acids: the first undergoes oxidative deamination, and the second acts as an electron acceptor through reductive deamination. This redox reaction results in two keto acids that are employed to synthesise ATP via substrate-level phosphorylation. The Stickland reaction is the basic bioenergetic pathway of some bacteria of the genus Clostridium. Two other facts support Stickland fermentation in the RNA world. First, several Stickland amino acid pairs are synthesised in abiotic amino acid synthesis. This suggests that amino acids that could be used as an energy substrate were freely available. Second, anticodons that have complementary sequences often correspond to amino acids that form Stickland pairs. The main hypothesis of this paper is that pairs of complementary proto-adapters were assigned to Stickland amino acids pairs. There are signatures of this hypothesis in the genetic code. Furthermore, it is argued that the proto-adapters formed double strands that brought amino acid pairs into proximity to facilitate their mutual redox reaction, structurally constraining the anticodon pairs that are assigned to these amino acid pairs. Significance tests which randomise the code are performed to study the extent of the variability of the energetic (ATP) yield. Random assignments can lead to a substantial yield of ATP and maintain enough variability, thus selection can act and refine the assignments

  19. Amino acid fermentation at the origin of the genetic code

    Science.gov (United States)

    2012-01-01

    There is evidence that the genetic code was established prior to the existence of proteins, when metabolism was powered by ribozymes. Also, early proto-organisms had to rely on simple anaerobic bioenergetic processes. In this work I propose that amino acid fermentation powered metabolism in the RNA world, and that this was facilitated by proto-adapters, the precursors of the tRNAs. Amino acids were used as carbon sources rather than as catalytic or structural elements. In modern bacteria, amino acid fermentation is known as the Stickland reaction. This pathway involves two amino acids: the first undergoes oxidative deamination, and the second acts as an electron acceptor through reductive deamination. This redox reaction results in two keto acids that are employed to synthesise ATP via substrate-level phosphorylation. The Stickland reaction is the basic bioenergetic pathway of some bacteria of the genus Clostridium. Two other facts support Stickland fermentation in the RNA world. First, several Stickland amino acid pairs are synthesised in abiotic amino acid synthesis. This suggests that amino acids that could be used as an energy substrate were freely available. Second, anticodons that have complementary sequences often correspond to amino acids that form Stickland pairs. The main hypothesis of this paper is that pairs of complementary proto-adapters were assigned to Stickland amino acids pairs. There are signatures of this hypothesis in the genetic code. Furthermore, it is argued that the proto-adapters formed double strands that brought amino acid pairs into proximity to facilitate their mutual redox reaction, structurally constraining the anticodon pairs that are assigned to these amino acid pairs. Significance tests which randomise the code are performed to study the extent of the variability of the energetic (ATP) yield. Random assignments can lead to a substantial yield of ATP and maintain enough variability, thus selection can act and refine the assignments

  20. Dosimetry boron neutron capture therapy in liver cancer (hepatocellular carcinoma) by means of MCNP-code with neutron source from thermal column

    International Nuclear Information System (INIS)

    Irhas; Andang Widi Harto; Yohannes Sardjono

    2014-01-01

    Boron Neutron Capture Therapy (BNCT) using physics principle when B 10 (Boron-10) irradiated by low energy neutron (thermal neutron). Boron and thermal neutron reaction produced B 11m (Boron-11m) (t 1/2 =10 -2 s). B 11m decay emitted alpha, Li 7 (Lithium-7) particle and gamma ray. Irradiated time needed to ensure cancer dose enough. Liver cancer was primary malignant who located in liver (Hepatocellular carcinoma). Malignant in liver were different to metastatic from Breast, Colon Cancer, and the other. This condition was Metastatic Liver Cancer. Monte Carlo method used by Monte Carlo N-Particle (MCNP) Software. Probabilistic approach used for probability of interaction occurred and record refers to characteristic of particle and material. In this case, thermal neutron produced by model of Collimated Thermal Column Kartini Research Nuclear Reactor, Yogyakarta. Modelling organ and source used liver organ that contain of cancer tissue and research reactor. Variation of boron concentration was 20, 25, 30, 35, 40, 45, and 47 µg/g cancers. Output of MCNP calculation were neutron scattering dose, gamma ray dose and neutron flux from reactor. Neutron flux used to calculate alpha, proton and gamma ray dose from interaction of tissue material and thermal neutron. Variation of boron concentration result dose rate to every variation were 0,059; 0,072; 0,084; 0,098; 0.108; 0,12; 0,125 Gy/sec. Irradiation time who need to every concentration were 841,5 see (14 min 1 sec); 696,07 sec(11 min 36 sec); 593.11 sec (9 min 53 sec); 461,35 sec (8 min 30 sec); 461,238 sec (7 min 41 sec); 414,23 sec (6 min 54 sec); 398,38 sec (6 min 38 sec). Irradiating time could shortly when boron concentration more high. (author)

  1. New code of conduct

    CERN Multimedia

    Laëtitia Pedroso

    2010-01-01

    During his talk to the staff at the beginning of the year, the Director-General mentioned that a new code of conduct was being drawn up. What exactly is it and what is its purpose? Anne-Sylvie Catherin, Head of the Human Resources (HR) Department, talked to us about the whys and wherefores of the project.   Drawing by Georges Boixader from the cartoon strip “The World of Particles” by Brian Southworth. A code of conduct is a general framework laying down the behaviour expected of all members of an organisation's personnel. “CERN is one of the very few international organisations that don’t yet have one", explains Anne-Sylvie Catherin. “We have been thinking about introducing a code of conduct for a long time but lacked the necessary resources until now”. The call for a code of conduct has come from different sources within the Laboratory. “The Equal Opportunities Advisory Panel (read also the "Equal opportuni...

  2. MELCOR computer code manuals

    Energy Technology Data Exchange (ETDEWEB)

    Summers, R.M.; Cole, R.K. Jr.; Smith, R.C.; Stuart, D.S.; Thompson, S.L. [Sandia National Labs., Albuquerque, NM (United States); Hodge, S.A.; Hyman, C.R.; Sanders, R.L. [Oak Ridge National Lab., TN (United States)

    1995-03-01

    MELCOR is a fully integrated, engineering-level computer code that models the progression of severe accidents in light water reactor nuclear power plants. MELCOR is being developed at Sandia National Laboratories for the U.S. Nuclear Regulatory Commission as a second-generation plant risk assessment tool and the successor to the Source Term Code Package. A broad spectrum of severe accident phenomena in both boiling and pressurized water reactors is treated in MELCOR in a unified framework. These include: thermal-hydraulic response in the reactor coolant system, reactor cavity, containment, and confinement buildings; core heatup, degradation, and relocation; core-concrete attack; hydrogen production, transport, and combustion; fission product release and transport; and the impact of engineered safety features on thermal-hydraulic and radionuclide behavior. Current uses of MELCOR include estimation of severe accident source terms and their sensitivities and uncertainties in a variety of applications. This publication of the MELCOR computer code manuals corresponds to MELCOR 1.8.3, released to users in August, 1994. Volume 1 contains a primer that describes MELCOR`s phenomenological scope, organization (by package), and documentation. The remainder of Volume 1 contains the MELCOR Users Guides, which provide the input instructions and guidelines for each package. Volume 2 contains the MELCOR Reference Manuals, which describe the phenomenological models that have been implemented in each package.

  3. MELCOR computer code manuals

    International Nuclear Information System (INIS)

    Summers, R.M.; Cole, R.K. Jr.; Smith, R.C.; Stuart, D.S.; Thompson, S.L.; Hodge, S.A.; Hyman, C.R.; Sanders, R.L.

    1995-03-01

    MELCOR is a fully integrated, engineering-level computer code that models the progression of severe accidents in light water reactor nuclear power plants. MELCOR is being developed at Sandia National Laboratories for the U.S. Nuclear Regulatory Commission as a second-generation plant risk assessment tool and the successor to the Source Term Code Package. A broad spectrum of severe accident phenomena in both boiling and pressurized water reactors is treated in MELCOR in a unified framework. These include: thermal-hydraulic response in the reactor coolant system, reactor cavity, containment, and confinement buildings; core heatup, degradation, and relocation; core-concrete attack; hydrogen production, transport, and combustion; fission product release and transport; and the impact of engineered safety features on thermal-hydraulic and radionuclide behavior. Current uses of MELCOR include estimation of severe accident source terms and their sensitivities and uncertainties in a variety of applications. This publication of the MELCOR computer code manuals corresponds to MELCOR 1.8.3, released to users in August, 1994. Volume 1 contains a primer that describes MELCOR's phenomenological scope, organization (by package), and documentation. The remainder of Volume 1 contains the MELCOR Users Guides, which provide the input instructions and guidelines for each package. Volume 2 contains the MELCOR Reference Manuals, which describe the phenomenological models that have been implemented in each package

  4. Coding in pigeons: Multiple-coding versus single-code/default strategies.

    Science.gov (United States)

    Pinto, Carlos; Machado, Armando

    2015-05-01

    To investigate the coding strategies that pigeons may use in a temporal discrimination tasks, pigeons were trained on a matching-to-sample procedure with three sample durations (2s, 6s and 18s) and two comparisons (red and green hues). One comparison was correct following 2-s samples and the other was correct following both 6-s and 18-s samples. Tests were then run to contrast the predictions of two hypotheses concerning the pigeons' coding strategies, the multiple-coding and the single-code/default. According to the multiple-coding hypothesis, three response rules are acquired, one for each sample. According to the single-code/default hypothesis, only two response rules are acquired, one for the 2-s sample and a "default" rule for any other duration. In retention interval tests, pigeons preferred the "default" key, a result predicted by the single-code/default hypothesis. In no-sample tests, pigeons preferred the key associated with the 2-s sample, a result predicted by multiple-coding. Finally, in generalization tests, when the sample duration equaled 3.5s, the geometric mean of 2s and 6s, pigeons preferred the key associated with the 6-s and 18-s samples, a result predicted by the single-code/default hypothesis. The pattern of results suggests the need for models that take into account multiple sources of stimulus control. © Society for the Experimental Analysis of Behavior.

  5. Sleeping dendrites: fiber-optic measurements of dendritic calcium activity in freely moving and sleeping animals

    Directory of Open Access Journals (Sweden)

    Julie Seibt

    2014-03-01

    Full Text Available Dendrites are the post-synaptic sites of most excitatory and inhibitory synapses in the brain, making them the main location of cortical information processing and synaptic plasticity. Although current hypotheses suggest a central role for sleep in proper cognitive function and brain plasticity, virtually nothing is known about changes in dendritic activity across the sleep-wake cycle and how waking experience modifies this activity. To start addressing these questions, we developed a method that allows long-term recordings of EEGs/EMG combined with in vivo cortical calcium (Ca2+ activity in freely moving and sleeping rats. We measured Ca2+ activity from populations of dendrites of layer (L 5 pyramidal neurons (n = 13 rats that we compared with Ca2+ activity from populations of neurons in L2/3 (n = 11 rats. L5 and L2/3 neurons were labelled using bolus injection of OGB1-AM or GCaMP6 (1. Ca2+ signals were detected using a fiber-optic system (cannula diameter = 400µm, transmitting the changes in fluorescence to a photodiode. Ca2+ fluctuations could then be correlated with ongoing changes in brain oscillatory activity during 5 major brain states: active wake [AW], quiet wake [QW], NREM, REM and NREM-REM transition (or intermediate state, [IS]. Our Ca2+ recordings show large transients in L5 dendrites and L2/3 neurons that oscillate predominantly at frequencies In summary, we show that this technique is successful in monitoring fluctuations in ongoing dendritic Ca2+ activity during natural brain states and allows, in principle, to combine behavioral measurement with imaging from various brain regions (e.g. deep structures in freely behaving animals. Using this method, we show that Ca2+ transients from populations of L2/3 neurons and L5 dendrites are deferentially regulated across the sleep/wake cycle, with dendritic activity being the highest during the IS sleep. Our correlation analysis suggests that specific sleep EEG activity during NREM and IS

  6. OSGeo - Open Source Geospatial Foundation

    Directory of Open Access Journals (Sweden)

    Margherita Di Leo

    2012-09-01

    Full Text Available L'esigenza nata verso la fine del 2005 di selezionare ed organizzare più di 200 progetti FOSS4G porta alla nascita nel Febbraio2006 di OSGeo (the Open Source Geospatial Foundation, organizzazione internazionale la cui mission è promuovere lo sviluppo collaborativo di software libero focalizzato sull'informazione geografica (FOSS4G.Open   Source   Geospatial   Foundation (OSGeoThe Open Source Geospatial Foundation (OSGeo  is  a  not-for-profit  organization, created  in  early  2006  to  the  aim  at  sup-porting   the   collaborative   development of  geospatial  open  source  software,  and promote its widespread use. The founda-tion provides financial, organizational and legal support to the broader open source geospatial community. It also serves as an independent  legal  entity  to  which  com-munity  members  can  contribute  code, funding  and  other  resources,  secure  in the knowledge that their contributions will be maintained for public benefit. OSGeo also  serves  as  an  outreach  and  advocacy organization for the open source geospa-tial  community,  and  provides  a  common forum  and  shared  infrastructure  for  im-proving  cross-project  collaboration.  The foundation's projects are all freely available and  useable  under  an  OSI-certified  open source license. The Italian OSGeo local chapter is named GFOSS.it     (Associazione     Italiana     per l'informazione Geografica Libera.

  7. Automatic coding method of the ACR Code

    International Nuclear Information System (INIS)

    Park, Kwi Ae; Ihm, Jong Sool; Ahn, Woo Hyun; Baik, Seung Kook; Choi, Han Yong; Kim, Bong Gi

    1993-01-01

    The authors developed a computer program for automatic coding of ACR(American College of Radiology) code. The automatic coding of the ACR code is essential for computerization of the data in the department of radiology. This program was written in foxbase language and has been used for automatic coding of diagnosis in the Department of Radiology, Wallace Memorial Baptist since May 1992. The ACR dictionary files consisted of 11 files, one for the organ code and the others for the pathology code. The organ code was obtained by typing organ name or code number itself among the upper and lower level codes of the selected one that were simultaneous displayed on the screen. According to the first number of the selected organ code, the corresponding pathology code file was chosen automatically. By the similar fashion of organ code selection, the proper pathologic dode was obtained. An example of obtained ACR code is '131.3661'. This procedure was reproducible regardless of the number of fields of data. Because this program was written in 'User's Defined Function' from, decoding of the stored ACR code was achieved by this same program and incorporation of this program into program in to another data processing was possible. This program had merits of simple operation, accurate and detail coding, and easy adjustment for another program. Therefore, this program can be used for automation of routine work in the department of radiology

  8. Flexible Coupling of Respiration and Vocalizations with Locomotion and Head Movements in the Freely Behaving Rat

    Directory of Open Access Journals (Sweden)

    Joseph Andrews Alves

    2016-01-01

    Full Text Available Quadrupedal mammals typically synchronize their respiration with body movements during rhythmic locomotion. In the rat, fast respiration is coupled to head movements during sniffing behavior, but whether respiration is entrained by stride dynamics is not known. We recorded intranasal pressure, head acceleration, instantaneous speed, and ultrasonic vocalizations from male and female adult rats while freely behaving in a social environment. We used high-speed video recordings of stride to understand how head acceleration signals relate to locomotion and developed techniques to identify episodes of sniffing, walking, trotting, and galloping from the recorded variables. Quantitative analysis of synchrony between respiration and head acceleration rhythms revealed that respiration and locomotion movements were coordinated but with a weaker coupling than expected from previous work in other mammals. We have recently shown that rats behaving in social settings produce high rates of ultrasonic vocalizations during locomotion bouts. Accordingly, rats emitted vocalizations in over half of the respiratory cycles during fast displacements. We present evidence suggesting that emission of these calls disrupts the entrainment of respiration by stride. The coupling between these two variables is thus flexible, such that it can be overridden by other behavioral demands.

  9. Estimation of unsteady aerodynamics in the wake of a freely flying European starling (Sturnus vulgaris.

    Directory of Open Access Journals (Sweden)

    Hadar Ben-Gida

    Full Text Available Wing flapping is one of the most widespread propulsion methods found in nature; however, the current understanding of the aerodynamics in bird wakes is incomplete. The role of the unsteady motion in the flow and its contribution to the aerodynamics is still an open question. In the current study, the wake of a freely flying European starling has been investigated using long-duration high-speed Particle Image Velocimetry (PIV in the near wake. Kinematic analysis of the wings and body of the bird has been performed using additional high-speed cameras that recorded the bird movement simultaneously with the PIV measurements. The wake evolution of four complete wingbeats has been characterized through reconstruction of the time-resolved data, and the aerodynamics in the wake have been analyzed in terms of the streamwise forces acting on the bird. The profile drag from classical aerodynamics was found to be positive during most of the wingbeat cycle, yet kinematic images show that the bird does not decelerate. It is shown that unsteady aerodynamics are necessary to satisfy the drag/thrust balance by approximating the unsteady drag term. These findings may shed light on the flight efficiency of birds by providing a partial answer to how they minimize drag during flapping flight.

  10. Beta oscillations in freely moving Parkinson's subjects are attenuated during deep brain stimulation.

    Science.gov (United States)

    Quinn, Emma J; Blumenfeld, Zack; Velisar, Anca; Koop, Mandy Miller; Shreve, Lauren A; Trager, Megan H; Hill, Bruce C; Kilbane, Camilla; Henderson, Jaimie M; Brontë-Stewart, Helen

    2015-11-01

    Investigations into the effect of deep brain stimulation (DBS) on subthalamic (STN) beta (13-30 Hz) oscillations have been performed in the perioperative period with the subject tethered to equipment. Using an embedded sensing neurostimulator, this study investigated whether beta power was similar in different resting postures and during forward walking in freely moving subjects with Parkinson's disease (PD) and whether STN DBS attenuated beta power in a voltage-dependent manner. Subthalamic local field potentials were recorded from the DBS lead, using a sensing neurostimulator (Activa(®) PC+S, Medtronic, Inc., Food and Drug Administration- Investigational Device Exemption (IDE)-, institutional review board-approved) from 15 PD subjects (30 STNs) off medication during lying, sitting, and standing, during forward walking, and during randomized periods of 140 Hz DBS at 0 V, 1 V, and 2.5/3 V. Continuous video, limb angular velocity, and forearm electromyography recordings were synchronized with neural recordings. Data were parsed to avoid any movement or electrical artifact during resting states. Beta power was similar during lying, sitting, and standing (P = 0.077, n = 28) and during forward walking compared with the averaged resting state (P = 0.466, n = 24), although akinetic rigid PD subjects tended to exhibit decreased beta power when walking. Deep brain stimulation at 3 V and at 1 V attenuated beta power compared with 0 V (P closed-loop DBS. © 2015 International Parkinson and Movement Disorder Society.

  11. Dimension dependence of clustering dynamics in models of ballistic aggregation and freely cooling granular gas

    Science.gov (United States)

    Paul, Subhajit; Das, Subir K.

    2018-03-01

    Via event-driven molecular dynamics simulations we study kinetics of clustering in assemblies of inelastic particles in various space dimensions. We consider two models, viz., the ballistic aggregation model (BAM) and the freely cooling granular gas model (GGM), for each of which we quantify the time dependence of kinetic energy and average mass of clusters (that form due to inelastic collisions). These quantities, for both the models, exhibit power-law behavior, at least in the long time limit. For the BAM, corresponding exponents exhibit strong dimension dependence and follow a hyperscaling relation. In addition, in the high packing fraction limit the behavior of these quantities become consistent with a scaling theory that predicts an inverse relation between energy and mass. On the other hand, in the case of the GGM we do not find any evidence for such a picture. In this case, even though the energy decay, irrespective of packing fraction, matches quantitatively with that for the high packing fraction picture of the BAM, it is inversely proportional to the growth of mass only in one dimension, and the growth appears to be rather insensitive to the choice of the dimension, unlike the BAM.

  12. Direct measurement of the ballistic motion of a freely floating colloid in Newtonian and viscoelastic fluids.

    Science.gov (United States)

    Hammond, Andrew P; Corwin, Eric I

    2017-10-01

    A thermal colloid suspended in a liquid will transition from a short-time ballistic motion to a long-time diffusive motion. However, the transition between ballistic and diffusive motion is highly dependent on the properties and structure of the particular liquid. We directly observe a free floating tracer particle's ballistic motion and its transition to the long-time regime in both a Newtonian fluid and a viscoelastic Maxwell fluid. We examine the motion of the free particle in a Newtonian fluid and demonstrate a high degree of agreement with the accepted Clercx-Schram model for motion in a dense fluid. Measurements of the functional form of the ballistic-to-diffusive transition provide direct measurements of the temperature, viscosity, and tracer radius. We likewise measure the motion in a viscoelastic Maxwell fluid and find a significant disagreement between the theoretical asymptotic behavior and our measured values of the microscopic properties of the fluid. We observe a greatly increased effective mass for a freely moving particle and a decreased plateau modulus.

  13. Non-freely generated W-algebras and construction of N=2 super W-algebras

    International Nuclear Information System (INIS)

    Blumenhagen, R.

    1994-07-01

    Firstly, we investigate the origin of the bosonic W-algebras W(2, 3, 4, 5), W(2, 4, 6) and W(2, 4, 6) found earlier by direct construction. We present a coset construction for all three examples leading to a new type of finitely, non-freely generated quantum W-algebras, which we call unifying W-algebras. Secondly, we develop a manifest covariant formalism to construct N = 2 super W-algebras explicitly on a computer. Applying this algorithm enables us to construct the first four examples of N = 2 super W-algebras with two generators and the N = 2 super W 4 algebra involving three generators. The representation theory of the former ones shows that all examples could be divided into four classes, the largest one containing the N = 2 special type of spectral flow algebras. Besides the W-algebra of the CP(3) Kazama-Suzuki coset model, the latter example with three generators discloses a second solution which could also be explained as a unifying W-algebra for the CP(n) models. (orig.)

  14. FlyMAD: rapid thermogenetic control of neuronal activity in freely walking Drosophila.

    Science.gov (United States)

    Bath, Daniel E; Stowers, John R; Hörmann, Dorothea; Poehlmann, Andreas; Dickson, Barry J; Straw, Andrew D

    2014-07-01

    Rapidly and selectively modulating the activity of defined neurons in unrestrained animals is a powerful approach in investigating the circuit mechanisms that shape behavior. In Drosophila melanogaster, temperature-sensitive silencers and activators are widely used to control the activities of genetically defined neuronal cell types. A limitation of these thermogenetic approaches, however, has been their poor temporal resolution. Here we introduce FlyMAD (the fly mind-altering device), which allows thermogenetic silencing or activation within seconds or even fractions of a second. Using computer vision, FlyMAD targets an infrared laser to freely walking flies. As a proof of principle, we demonstrated the rapid silencing and activation of neurons involved in locomotion, vision and courtship. The spatial resolution of the focused beam enabled preferential targeting of neurons in the brain or ventral nerve cord. Moreover, the high temporal resolution of FlyMAD allowed us to discover distinct timing relationships for two neuronal cell types previously linked to courtship song.

  15. A wireless power transmission system for implantable devices in freely moving rodents.

    Science.gov (United States)

    Eom, Kyungsik; Jeong, Joonsoo; Lee, Tae Hyung; Kim, Jinhyung; Kim, Junghoon; Lee, Sung Eun; Kim, Sung June

    2014-08-01

    Reliable wireless power delivery for implantable devices in animals is highly desired for safe and effective experimental use. Batteries require frequent replacement; wired connections are inconvenient and unsafe, and short-distance inductive coupling requires the attachment of an exterior transmitter to the animal's body. In this article, we propose a solution by which animals with implantable devices can move freely without attachments. Power is transmitted using coils attached to the animal's cage and is received by a receiver coil implanted in the animal. For a three-dimensionally uniform delivery of power, we designed a columnar dual-transmitter coil configuration. A resonator-based inductive link was adopted for efficient long-range power delivery, and we used a novel biocompatible liquid crystal polymer substrate as the implantable receiver device. Using this wireless power delivery system, we obtain an average power transfer efficiency of 15.2% (minimum efficiency of 10% and a standard deviation of 2.6) within a cage of 15×20×15 cm3.

  16. Haloperidol-induced changes in neuronal activity in the striatum of the freely moving rat

    Directory of Open Access Journals (Sweden)

    Dorin eYael

    2013-12-01

    Full Text Available The striatum is the main input structure of the basal ganglia, integrating input from the cerebral cortex and the thalamus, which is modulated by midbrain dopaminergic input. Dopamine modulators, including agonists and antagonists, are widely used to relieve motor and psychiatric symptoms in a variety of pathological conditions. Haloperidol, a dopamine D2 antagonist, is commonly used in multiple psychiatric conditions and motor abnormalities. This article reports the effects of haloperidol on the activity of three major striatal subpopulations: medium spiny projection neurons (MSNs, fast spiking interneurons (FSIs and tonically active neurons (TANs. We implanted multi-wire electrode arrays in the rat dorsal striatum and recorded the activity of multiple single units in freely moving animals before and after systemic haloperidol injection. Haloperidol decreased the firing rate of FSIs and MSNs while increasing their tendency to fire in an oscillatory manner in the high voltage spindle (HVS frequency range of 7-9 Hz. Haloperidol led to an increased firing rate of TANs but did not affect their non-oscillatory firing pattern and their typical correlated firing activity. Our results suggest that dopamine plays a key role in tuning both single unit activity and the interactions within and between different subpopulations in the striatum in a differential manner. These findings highlight the heterogeneous striatal effects of tonic dopamine regulation via D2 receptors which potentially enable the treatment of diverse pathological states associated with basal ganglia dysfunction.

  17. In vivo measurement of aerodynamic weight support in freely flying birds

    Science.gov (United States)

    Lentink, David; Haselsteiner, Andreas; Ingersoll, Rivers

    2014-11-01

    Birds dynamically change the shape of their wing during the stroke to support their body weight aerodynamically. The wing is partially folded during the upstroke, which suggests that the upstroke of birds might not actively contribute to aerodynamic force production. This hypothesis is supported by the significant mass difference between the large pectoralis muscle that powers the down-stroke and the much smaller supracoracoideus that drives the upstroke. Previous works used indirect or incomplete techniques to measure the total force generated by bird wings ranging from muscle force, airflow, wing surface pressure, to detailed kinematics measurements coupled with bird mass-distribution models to derive net force through second derivatives. We have validated a new method that measures aerodynamic force in vivo time-resolved directly in freely flying birds which can resolve this question. The validation of the method, using independent force measurements on a quadcopter with pulsating thrust, show the aerodynamic force and impulse are measured within 2% accuracy and time-resolved. We demonstrate results for quad-copters and birds of similar weight and size. The method is scalable and can be applied to both engineered and natural flyers across taxa. The first author invented the method, the second and third authors validated the method and present results for quadcopters and birds.

  18. A wireless multi-channel recording system for freely behaving mice and rats.

    Science.gov (United States)

    Fan, David; Rich, Dylan; Holtzman, Tahl; Ruther, Patrick; Dalley, Jeffrey W; Lopez, Alberto; Rossi, Mark A; Barter, Joseph W; Salas-Meza, Daniel; Herwik, Stanislav; Holzhammer, Tobias; Morizio, James; Yin, Henry H

    2011-01-01

    To understand the neural basis of behavior, it is necessary to record brain activity in freely moving animals. Advances in implantable multi-electrode array technology have enabled researchers to record the activity of neuronal ensembles from multiple brain regions. The full potential of this approach is currently limited by reliance on cable tethers, with bundles of wires connecting the implanted electrodes to the data acquisition system while impeding the natural behavior of the animal. To overcome these limitations, here we introduce a multi-channel wireless headstage system designed for small animals such as rats and mice. A variety of single unit and local field potential signals were recorded from the dorsal striatum and substantia nigra in mice and the ventral striatum and prefrontal cortex simultaneously in rats. This wireless system could be interfaced with commercially available data acquisition systems, and the signals obtained were comparable in quality to those acquired using cable tethers. On account of its small size, light weight, and rechargeable battery, this wireless headstage system is suitable for studying the neural basis of natural behavior, eliminating the need for wires, commutators, and other limitations associated with traditional tethered recording systems.

  19. A wireless multi-channel recording system for freely behaving mice and rats.

    Directory of Open Access Journals (Sweden)

    David Fan

    Full Text Available To understand the neural basis of behavior, it is necessary to record brain activity in freely moving animals. Advances in implantable multi-electrode array technology have enabled researchers to record the activity of neuronal ensembles from multiple brain regions. The full potential of this approach is currently limited by reliance on cable tethers, with bundles of wires connecting the implanted electrodes to the data acquisition system while impeding the natural behavior of the animal. To overcome these limitations, here we introduce a multi-channel wireless headstage system designed for small animals such as rats and mice. A variety of single unit and local field potential signals were recorded from the dorsal striatum and substantia nigra in mice and the ventral striatum and prefrontal cortex simultaneously in rats. This wireless system could be interfaced with commercially available data acquisition systems, and the signals obtained were comparable in quality to those acquired using cable tethers. On account of its small size, light weight, and rechargeable battery, this wireless headstage system is suitable for studying the neural basis of natural behavior, eliminating the need for wires, commutators, and other limitations associated with traditional tethered recording systems.

  20. How cheap is soaring flight in raptors? A preliminary investigation in freely-flying vultures.

    Science.gov (United States)

    Duriez, Olivier; Kato, Akiko; Tromp, Clara; Dell'Omo, Giacomo; Vyssotski, Alexei L; Sarrazin, François; Ropert-Coudert, Yan

    2014-01-01

    Measuring the costs of soaring, gliding and flapping flight in raptors is challenging, but essential for understanding their ecology. Among raptors, vultures are scavengers that have evolved highly efficient soaring-gliding flight techniques to minimize energy costs to find unpredictable food resources. Using electrocardiogram, GPS and accelerometer bio-loggers, we report the heart rate (HR) of captive griffon vultures (Gyps fulvus and G. himalayensis) trained for freely-flying. HR increased three-fold at take-off (characterized by prolonged flapping flight) and landing (>300 beats-per-minute, (bpm)) compared to baseline levels (80-100 bpm). However, within 10 minutes after the initial flapping phase, HR in soaring/gliding flight dropped to values similar to baseline levels, i.e. slightly lower than theoretically expected. However, the extremely rapid decrease in HR was unexpected, when compared with other marine gliders, such as albatrosses. Weather conditions influenced flight performance and HR was noticeably higher during cloudy compared to sunny conditions when prolonged soaring flight is made easier by thermal ascending air currents. Soaring as a cheap locomotory mode is a crucial adaptation for vultures who spend so long on the wing for wide-ranging movements to find food.

  1. Effect of cascade remnants on freely migrating defects in Cu-1% Au alloys

    Energy Technology Data Exchange (ETDEWEB)

    Iwase, A; Rehn, L E; Baldo, P M; Funk, L [Argonne National Lab., IL (United States). Materials Science Div.

    1997-03-01

    The effects of cascade remnants on Freely Migrating Defects (FMD) were studied by measuring Radiation-Induced Segregation (RIS) in Cu-1%Au at 400degC during simultaneous irradiation with 1.5-MeV He and (400-800)-keV heavy ions (Ne, Ar or Cu). The large RIS observed during 1.5-MeV He-only irradiation was dramatically suppressed under simultaneous heavy ion irradiation. For Cu simultaneous irradiation, the suppression disappeared immediately after the Cu irradiation ceased, while for simultaneous inert gas (Ne or Ar) irradiation, the suppression persisted after the ion beam was turned off. These results demonstrate that the displacement cascades created by heavy ions introduce additional annihilation sites, which reduce the steady-state FMD concentrations. As the cascade remnants produced by Cu ions are thermally unstable at 400degC, the RIS suppression occurs only during simultaneous irradiation. On the other hand, the inert gas atoms which accumulate in the specimen apparently stabilize the cascade remnants, allowing the suppression to persist. (author)

  2. Error-correction coding

    Science.gov (United States)

    Hinds, Erold W. (Principal Investigator)

    1996-01-01

    This report describes the progress made towards the completion of a specific task on error-correcting coding. The proposed research consisted of investigating the use of modulation block codes as the inner code of a concatenated coding system in order to improve the overall space link communications performance. The study proposed to identify and analyze candidate codes that will complement the performance of the overall coding system which uses the interleaved RS (255,223) code as the outer code.

  3. Dynamic Shannon Coding

    OpenAIRE

    Gagie, Travis

    2005-01-01

    We present a new algorithm for dynamic prefix-free coding, based on Shannon coding. We give a simple analysis and prove a better upper bound on the length of the encoding produced than the corresponding bound for dynamic Huffman coding. We show how our algorithm can be modified for efficient length-restricted coding, alphabetic coding and coding with unequal letter costs.

  4. Fundamentals of convolutional coding

    CERN Document Server

    Johannesson, Rolf

    2015-01-01

    Fundamentals of Convolutional Coding, Second Edition, regarded as a bible of convolutional coding brings you a clear and comprehensive discussion of the basic principles of this field * Two new chapters on low-density parity-check (LDPC) convolutional codes and iterative coding * Viterbi, BCJR, BEAST, list, and sequential decoding of convolutional codes * Distance properties of convolutional codes * Includes a downloadable solutions manual

  5. Codes Over Hyperfields

    Directory of Open Access Journals (Sweden)

    Atamewoue Surdive

    2017-12-01

    Full Text Available In this paper, we define linear codes and cyclic codes over a finite Krasner hyperfield and we characterize these codes by their generator matrices and parity check matrices. We also demonstrate that codes over finite Krasner hyperfields are more interesting for code theory than codes over classical finite fields.

  6. LFSC - Linac Feedback Simulation Code

    Energy Technology Data Exchange (ETDEWEB)

    Ivanov, Valentin; /Fermilab

    2008-05-01

    The computer program LFSC (Code>) is a numerical tool for simulation beam based feedback in high performance linacs. The code LFSC is based on the earlier version developed by a collective of authors at SLAC (L.Hendrickson, R. McEwen, T. Himel, H. Shoaee, S. Shah, P. Emma, P. Schultz) during 1990-2005. That code was successively used in simulation of SLC, TESLA, CLIC and NLC projects. It can simulate as pulse-to-pulse feedback on timescale corresponding to 5-100 Hz, as slower feedbacks, operating in the 0.1-1 Hz range in the Main Linac and Beam Delivery System. The code LFSC is running under Matlab for MS Windows operating system. It contains about 30,000 lines of source code in more than 260 subroutines. The code uses the LIAR ('Linear Accelerator Research code') for particle tracking under ground motion and technical noise perturbations. It uses the Guinea Pig code to simulate the luminosity performance. A set of input files includes the lattice description (XSIF format), and plane text files with numerical parameters, wake fields, ground motion data etc. The Matlab environment provides a flexible system for graphical output.

  7. Effects of dissolved organic matter from a eutrophic lake on the freely dissolved concentrations of emerging organic contaminants.

    Science.gov (United States)

    Xiao, Yi-Hua; Huang, Qing-Hui; Vähätalo, Anssi V; Li, Fei-Peng; Chen, Ling

    2014-08-01

    The authors studied the effects of dissolved organic matter (DOM) on the bioavailability of bisphenol A (BPA) and chloramphenicol by measuring the freely dissolved concentrations of the contaminants in solutions containing DOM that had been isolated from a mesocosm in a eutrophic lake. The abundance and aromaticity of the chromophoric DOM increased over the 25-d mesocosm experiment. The BPA freely dissolved concentration was 72.3% lower and the chloramphenicol freely dissolved concentration was 56.2% lower using DOM collected on day 25 than using DOM collected on day 1 of the mesocosm experiment. The freely dissolved concentrations negatively correlated with the ultraviolent absorption coefficient at 254 nm and positively correlated with the spectral slope of chromophoric DOM, suggesting that the bioavailability of these emerging organic contaminants depends on the characteristics of the DOM present. The DOM-water partition coefficients (log KOC ) for the emerging organic contaminants positively correlated with the aromaticity of the DOM, measured as humic acid-like fluorescent components C1 (excitation/emission=250[313]/412 nm) and C2 (excitation/emission=268[379]/456 nm). The authors conclude that the bioavailability of emerging organic contaminants in eutrophic lakes can be affected by changes in the DOM. © 2014 SETAC.

  8. Implantable fiber-optic interface for parallel multisite long-term optical dynamic brain interrogation in freely moving mice

    Science.gov (United States)

    Doronina-Amitonova, L. V.; Fedotov, I. V.; Ivashkina, O. I.; Zots, M. A.; Fedotov, A. B.; Anokhin, K. V.; Zheltikov, A. M.

    2013-01-01

    Seeing the big picture of functional responses within large neural networks in a freely functioning brain is crucial for understanding the cellular mechanisms behind the higher nervous activity, including the most complex brain functions, such as cognition and memory. As a breakthrough toward meeting this challenge, implantable fiber-optic interfaces integrating advanced optogenetic technologies and cutting-edge fiber-optic solutions have been demonstrated, enabling a long-term optogenetic manipulation of neural circuits in freely moving mice. Here, we show that a specifically designed implantable fiber-optic interface provides a powerful tool for parallel long-term optical interrogation of distinctly separate, functionally different sites in the brain of freely moving mice. This interface allows the same groups of neurons lying deeply in the brain of a freely behaving mouse to be reproducibly accessed and optically interrogated over many weeks, providing a long-term dynamic detection of genome activity in response to a broad variety of pharmacological and physiological stimuli. PMID:24253232

  9. Critical comparison of hydrodynamic models for gas-solid fluidized beds - Part II: freely bubbling gas-solid fluidized beds

    NARCIS (Netherlands)

    Patil, D.J.; van Sint Annaland, M.; Kuipers, J.A.M.

    2005-01-01

    Correct prediction of spontaneous bubble formation in freely bubbling gas¿solid fluidized beds using Eulerian models, strongly depends on the description of the internal momentum transfer in the particulate phase. In this part, the comparison of the simple classical model, describing the solid phase

  10. Academic Achievement and Classification of Students from the Freely Associated States in Guam Schools. REL 2017-260

    Science.gov (United States)

    Stewart, Joshua; Stringer, Katie; Arens, Sheila A.; Cicchinelli, Louis F.; San Nicolas, Heidi; Flores, Nieves

    2017-01-01

    Guam is home to the largest population of migrants from the Freely Associated States (FAS): the Federated States of Micronesia, the Republic of the Marshall Islands, and the Republic of Palau. FAS students made up 22 percent of total student enrollment in Guam public schools in 2012. FAS students face a number of challenges when they enter Guam…

  11. Firing properties of dopamine neurons in freely moving dopamine-deficient mice: Effects of dopamine receptor activation and anesthesia

    OpenAIRE

    Robinson, Siobhan; Smith, David M.; Mizumori, Sheri J. Y.; Palmiter, Richard D.

    2004-01-01

    To examine the regulation of midbrain dopamine neurons, recordings were obtained from single neurons of freely moving, genetically engineered dopamine-deficient (DD) mice. DD mice were tested without dopamine signaling (basal state) and with endogenous dopamine signaling (after L-dopa administration). In the basal state, when dopamine concentration in DD mice is

  12. Strong activation of vascular prejunctional beta 2-adrenoceptors in freely moving rats by adrenaline released as a co-transmitter

    NARCIS (Netherlands)

    COPPES, RP; SMIT, J; KHALI, NN; Brouwer, F.; ZAAGSMA, J

    1993-01-01

    The effect of adrenaline on the electrically evoked noradrenaline overflow in the portal vein of adrenal demedullated freely moving rats was studied. Adrenaline (100 ng/min) was infused for 2 h into the portal vein. After a 1-h interval when plasma adrenaline had returned to pre-infusion

  13. Visualizing Debugging Activity in Source Code Repositories

    OpenAIRE

    Voinea, Lucian; Telea, Alexandru

    2007-01-01

    We present the use of the CVSgrab visualization tool for understanding the debugging activity in the Mozilla project. We show how to display the distribution of different bug types over the project structure, locate project components which undergo heavy debugging activity, and get insight in the bug evolution in time.

  14. Visualizing Debugging Activity in Source Code Repositories

    NARCIS (Netherlands)

    Voinea, Lucian; Telea, Alexandru

    2007-01-01

    We present the use of the CVSgrab visualization tool for understanding the debugging activity in the Mozilla project. We show how to display the distribution of different bug types over the project structure, locate project components which undergo heavy debugging activity, and get insight in the

  15. Solving Semantic Searches for Source Code

    Science.gov (United States)

    2012-11-01

    but of input and expected output pairs. In this domain, those inputs take the form of strings and outputs could be one of sev- eral datatypes ...for some relaxation of CPi that yields C ′ Pi . Encoding weakening is performed by systematically making the constraints on a particular datatype ...the datatypes that can hold concrete or symbolic values: integers, characters, booleans, and strings. The Java implementation uses all the data types

  16. System Data Model (SDM) Source Code

    Science.gov (United States)

    2012-08-23

    default to a different encoding, for 13: example ISO -8859-1. When dftables is run, it creates these tables in the 14: current locale. If PCRE is...92, 92, /* U+26800 */ 557: 92, 92, 92, 92, 92, 92, 92, 92, 92, 92, 92, 92, 92, 92, 92, 92, /* U+ 27000 */ 558: 92, 92, 92, 92, 92, 92, 92, 92, 92

  17. Recovering management information from source code

    NARCIS (Netherlands)

    Kwiatkowski, L.; Verhoef, C.

    2013-01-01

    IT has become a production means for many organizations and an important element of business strategy. Even though its effective management is a must, reality shows that this area still remains in its infancy. IT management relies profoundly on relevant information which enables risk mitigation or

  18. Code portability and data management considerations in the SAS3D LMFBR accident-analysis code

    International Nuclear Information System (INIS)

    Dunn, F.E.

    1981-01-01

    The SAS3D code was produced from a predecessor in order to reduce or eliminate interrelated problems in the areas of code portability, the large size of the code, inflexibility in the use of memory and the size of cases that can be run, code maintenance, and running speed. Many conventional solutions, such as variable dimensioning, disk storage, virtual memory, and existing code-maintenance utilities were not feasible or did not help in this case. A new data management scheme was developed, coding standards and procedures were adopted, special machine-dependent routines were written, and a portable source code processing code was written. The resulting code is quite portable, quite flexible in the use of memory and the size of cases that can be run, much easier to maintain, and faster running. SAS3D is still a large, long running code that only runs well if sufficient main memory is available

  19. Blockade of central vasopressin receptors reduces the cardiovascular response to acute stress in freely moving rats.

    Science.gov (United States)

    Stojicić, S; Milutinović-Smiljanić, S; Sarenac, O; Milosavljević, S; Paton, J F R; Murphy, D; Japundzić-Zigon, N

    2008-04-01

    To investigate the contribution of central vasopressin receptors to blood pressure (BP) and heart rate (HR) response to stress we injected non-peptide selective V(1a) (SR49059), V(1b) (SSR149415), V(2) (SR121463) receptor antagonists, diazepam or vehicle in the lateral cerebral ventricle of conscious freely moving rats stressed by blowing air on their heads for 2 min. Cardiovascular effects of stress were evaluated by analyzing maximum increase of BP and HR (MAX), latency of maximum response (LAT), integral under BP and HR curve (integral), duration of their recovery and spectral parameters of BP and HR indicative of increased sympathetic outflow (LF(BP) and LF/HF(HR)). Moreover, the increase of serum corticosterone was measured. Exposure to air-jet stress induced simultaneous increase in BP and HR followed by gradual decline during recovery while LF(BP) oscillation remained increased as well as serum corticosterone level. Rats pre-treated with vasopressin receptor antagonists were not sedated while diazepam induced sedation that persisted during exposure to stress. V(1a), V(1b) and V(2) receptor antagonists applied separately did not modify basal values of cardiovascular parameters but prevented the increase in integral(BP). In addition, V(1b) and V(2) receptor antagonists reduced BP(MAX) whereas V(1a), V(1b) antagonist and diazepam reduced HR(MAX) induced by exposure to air-jet stress. All drugs shortened the recovery period, prevented the increase of LF(BP) without affecting the increase in serum corticosterone levels. Results indicate that vasopressin receptors located within the central nervous system mediate, in part, the cardiovascular response to air-jet stress without affecting either the neuroendocrine component or inducing sedation. They support the view that the V(1b) receptor antagonist may be of potential therapeutic value in reducing arterial pressure induced by stress-related disorders.

  20. Shear-induced autorotation of freely rotatable cylinder in a channel flow at moderate Reynolds number

    Science.gov (United States)

    Xia, Yi; Lin, Jianzhong; Ku, Xiaoke; Chan, Tatleung

    2018-04-01

    Flow past a center-pinned freely rotatable cylinder asymmetrically confined in a two-dimensional channel is simulated with the lattice Boltzmann method for a range of Reynolds number 0.1 ≤ Re ≤ 200, eccentricity ratio 0/8 ≤ ɛ ≤ 7/8, and blockage ratio 0.1 ≤ β ≤ 0.5. It is found that the inertia tends to facilitate the anomalous clockwise rotation of the cylinder. As the eccentricity ratio increases, the cylinder rotates faster in the counterclockwise direction and then slows down at a range of Re 40, there exists an anomalous clockwise rotation for the cylinder at a low eccentricity ratio and the domain where the cylinder rotates anomalously becomes larger with the increase in the Reynolds number. In a channel with a higher blockage ratio, the rotation of the cylinder is more sensitive to the change of cylinder lateral position, and the separatrix at which the cylinder remains a state of rest moves upward generally. The cylinder is more likely to rotate counterclockwise and the rotating velocity is larger. At a lower blockage ratio, the anomalous clockwise rotation is more likely to occur, and the largest rotating velocity occurs when the blockage ratio is equal to 0.3. The mechanism of distinct rotational behavior of the cylinder is attributed to the transformation of distribution of shear stress which is resulted from the variation of pressure drop, the shift of maximum or minimum pressure zones along the upper and lower semi-cylinder surface, and the movement of stagnant point and separate point. Finally, the effects of the cylinder rotation on the flow structure and hydrodynamic force exerted on the cylinder surface are analyzed as well.

  1. Mass distribution and rotational inertia of "microtype" and "freely mobile" middle ear ossicles in rodents.

    Science.gov (United States)

    Lavender, Danielle; Taraskin, Sergei N; Mason, Matthew J

    2011-12-01

    The middle ears of seven species of rodents, including four hamster species, were examined under light microscopy and through micro-CT imaging. Hamsters were found to possess a spectrum of ossicular morphologies ranging from something approaching "freely mobile" (Mesocricetus) to something nearer the "microtype" (Cricetulus), although no hamster has an orbicular apophysis of the malleus. Rats, mice and Calomyscus were found to have typically microtype ossicles. To explore the functional effects of these morphological differences, CT scan data were used to calculate the magnitudes of the moments of inertia and positions of the centres of mass and principal rotational axes for the malleus-incus complexes. Microtype species were found to have much greater ossicular inertias, relative to size, about the "anatomical axis" extending between anterior process of the malleus and short process of the incus; ossicular centres of mass were displaced further from this axis. Calculated inertial values were then put into an existing model of middle ear function (Hemilä et al., 1995), in order to see whether the more accurate data would improve predictions of upper hearing limits. For the rat and mouse they did, but this was not so for the hamster Mesocricetus. This might indicate that the inner rather than the middle ear limits hearing in this species, or might simply reflect other shortcomings of the model. Functional differences appear to exist even among rodent ears of the same general type, but the adaptive significance of these differences remains enigmatic. Copyright © 2011 Elsevier B.V. All rights reserved.

  2. A low-cost multichannel wireless neural stimulation system for freely roaming animals

    Science.gov (United States)

    Alam, Monzurul; Chen, Xi; Fernandez, Eduardo

    2013-12-01

    Objectives. Electrical stimulation of nerve tissue and recording of neural activity are the basis of many therapies and neural prostheses. Conventional stimulation systems have a number of practical limitations, especially in experiments involving freely roaming subjects. Our main objective was to develop a modular, versatile and inexpensive multichannel wireless system able to overcome some of these constraints. Approach. We have designed and implemented a new multichannel wireless neural stimulator based on commercial components. The system is small (2 cm × 4 cm × 0.5 cm) and light in weight (9 g) which allows it to be easily carried in a small backpack. To test and validate the performance and reliability of the whole system we conducted several bench tests and in vivo experiments. Main results. The performance and accuracy of the stimulator were comparable to commercial threaded systems. Stimulation sequences can be constructed on-the-fly with 251 selectable current levels (from 0 to 250 µA) with 1 µA step resolution. The pulse widths and intervals can be as long as 65 ms in 2 µs time resolution. The system covers approximately 10 m of transmission range in a regular laboratory environment and 100 m in free space (line of sight). Furthermore it provides great flexibility for experiments since it allows full control of the stimulator and the stimulation parameters in real time. When there is no stimulation, the device automatically goes into low-power sleep mode to preserve battery power. Significance. We introduce the design of a powerful multichannel wireless stimulator assembled from commercial components. Key features of the system are their reliability, robustness and small size. The system has a flexible design that can be modified straightforwardly to tailor it to any specific experimental need. Furthermore it can be effortlessly adapted for use with any kind of multielectrode arrays.

  3. Mapping Forest Canopy Height Across Large Areas by Upscaling ALS Estimates with Freely Available Satellite Data

    Directory of Open Access Journals (Sweden)

    Phil Wilkes

    2015-09-01

    Full Text Available Operational assessment of forest structure is an on-going challenge for land managers, particularly over large, remote or inaccessible areas. Here, we present an easily adopted method for generating a continuous map of canopy height at a 30 m resolution, demonstrated over 2.9 million hectares of highly heterogeneous forest (canopy height 0–70 m in Victoria, Australia. A two-stage approach was utilized where Airborne Laser Scanning (ALS derived canopy height, captured over ~18% of the study area, was used to train a regression tree ensemble method; random forest. Predictor variables, which have a global coverage and are freely available, included Landsat Thematic Mapper (Tasselled Cap transformed, Moderate Resolution Imaging Spectroradiometer Normalized Difference Vegetation Index time series, Shuttle Radar Topography Mission elevation data and other ancillary datasets. Reflectance variables were further processed to extract additional spatial and temporal contextual and textural variables. Modeled canopy height was validated following two approaches; (i random sample cross validation; and (ii with 108 inventory plots from outside the ALS capture extent. Both the cross validation and comparison with inventory data indicate canopy height can be estimated with a Root Mean Square Error (RMSE of ≤ 31% (~5.6 m at the 95th percentile confidence interval. Subtraction of the systematic component of model error, estimated from training data error residuals, rescaled canopy height values to more accurately represent the response variable distribution tails e.g., tall and short forest. Two further experiments were carried out to test the applicability and scalability of the presented method. Results suggest that (a no improvement in canopy height estimation is achieved when models were constructed and validated for smaller geographic areas, suggesting there is no upper limit to model scalability; and (b training data can be captured over a small

  4. Identification of behaviour in freely moving dogs (Canis familiaris using inertial sensors.

    Directory of Open Access Journals (Sweden)

    Linda Gerencsér

    Full Text Available Monitoring and describing the physical movements and body postures of animals is one of the most fundamental tasks of ethology. The more precise the observations are the more sophisticated the interpretations can be about the biology of a certain individual or species. Animal-borne data loggers have recently contributed much to the collection of motion-data from individuals, however, the problem of translating these measurements to distinct behavioural categories to create an ethogram is not overcome yet. The objective of the present study was to develop a "behaviour tracker": a system composed of a multiple sensor data-logger device (with a tri-axial accelerometer and a tri-axial gyroscope and a supervised learning algorithm as means of automated identification of the behaviour of freely moving dogs. We collected parallel sensor measurements and video recordings of each of our subjects (Belgian Malinois, N=12; Labrador Retrievers, N=12 that were guided through a predetermined series of standard activities. Seven behavioural categories (lay, sit, stand, walk, trot, gallop, canter were pre-defined and each video recording was tagged accordingly. Evaluation of the measurements was performed by support vector machine (SVM classification. During the analysis we used different combinations of independent measurements for training and validation (belonging to the same or different individuals or using different training data size to determine the robustness of the application. We reached an overall accuracy of above 90% perfect identification of all the defined seven categories of behaviour when both training and validation data belonged to the same individual, and over 80% perfect recognition rate using a generalized training data set of multiple subjects. Our results indicate that the present method provides a good model for an easily applicable, fast, automatic behaviour classification system that can be trained with arbitrary motion patterns and

  5. Comparative effects of organic and inorganic mercury on in vivo dopamine release in freely moving rats

    Directory of Open Access Journals (Sweden)

    L.R.F. Faro

    2007-10-01

    Full Text Available The present study was carried out in order to compare the effects of administration of organic (methylmercury, MeHg and inorganic (mercury chloride, HgCl 2 forms of mercury on in vivo dopamine (DA release from rat striatum. Experiments were performed in conscious and freely moving female adult Sprague-Dawley (230-280 g rats using brain microdialysis coupled to HPLC with electrochemical detection. Perfusion of different concentrations of MeHg or HgCl 2 (2 µL/min for 1 h, N = 5-7/group into the striatum produced significant increases in the levels of DA. Infusion of 40 µM, 400 µM, or 4 mM MeHg increased DA levels to 907 ± 31, 2324 ± 156, and 9032 ± 70% of basal levels, respectively. The same concentrations of HgCl 2 increased DA levels to 1240 ± 66, 2500 ± 424, and 2658 ± 337% of basal levels, respectively. These increases were associated with significant decreases in levels of dihydroxyphenylacetic acid and homovallinic acid. Intrastriatal administration of MeHg induced a sharp concentration-dependent increase in DA levels with a peak 30 min after injection, whereas HgCl 2 induced a gradual, lower (for 4 mM and delayed increase in DA levels (75 min after the beginning of perfusion. Comparing the neurochemical profile of the two mercury derivatives to induce increases in DA levels, we observed that the time-course of these increases induced by both mercurials was different and the effect produced by HgCl 2 was not concentration-dependent (the effect was the same for the concentrations of 400 µM and 4 mM HgCl 2 . These results indicate that HgCl 2 produces increases in extracellular DA levels by a mechanism differing from that of MeHg.

  6. Code-Mixing and Code Switchingin The Process of Learning

    Directory of Open Access Journals (Sweden)

    Diyah Atiek Mustikawati

    2016-09-01

    Full Text Available This study aimed to describe a form of code switching and code mixing specific form found in the teaching and learning activities in the classroom as well as determining factors influencing events stand out that form of code switching and code mixing in question.Form of this research is descriptive qualitative case study which took place in Al Mawaddah Boarding School Ponorogo. Based on the analysis and discussion that has been stated in the previous chapter that the form of code mixing and code switching learning activities in Al Mawaddah Boarding School is in between the use of either language Java language, Arabic, English and Indonesian, on the use of insertion of words, phrases, idioms, use of nouns, adjectives, clauses, and sentences. Code mixing deciding factor in the learning process include: Identification of the role, the desire to explain and interpret, sourced from the original language and its variations, is sourced from a foreign language. While deciding factor in the learning process of code, includes: speakers (O1, partners speakers (O2, the presence of a third person (O3, the topic of conversation, evoke a sense of humour, and just prestige. The significance of this study is to allow readers to see the use of language in a multilingual society, especially in AL Mawaddah boarding school about the rules and characteristics variation in the language of teaching and learning activities in the classroom. Furthermore, the results of this research will provide input to the ustadz / ustadzah and students in developing oral communication skills and the effectiveness of teaching and learning strategies in boarding schools.

  7. Homological stabilizer codes

    Energy Technology Data Exchange (ETDEWEB)

    Anderson, Jonas T., E-mail: jonastyleranderson@gmail.com

    2013-03-15

    In this paper we define homological stabilizer codes on qubits which encompass codes such as Kitaev's toric code and the topological color codes. These codes are defined solely by the graphs they reside on. This feature allows us to use properties of topological graph theory to determine the graphs which are suitable as homological stabilizer codes. We then show that all toric codes are equivalent to homological stabilizer codes on 4-valent graphs. We show that the topological color codes and toric codes correspond to two distinct classes of graphs. We define the notion of label set equivalencies and show that under a small set of constraints the only homological stabilizer codes without local logical operators are equivalent to Kitaev's toric code or to the topological color codes. - Highlights: Black-Right-Pointing-Pointer We show that Kitaev's toric codes are equivalent to homological stabilizer codes on 4-valent graphs. Black-Right-Pointing-Pointer We show that toric codes and color codes correspond to homological stabilizer codes on distinct graphs. Black-Right-Pointing-Pointer We find and classify all 2D homological stabilizer codes. Black-Right-Pointing-Pointer We find optimal codes among the homological stabilizer codes.

  8. The intercomparison of aerosol codes

    International Nuclear Information System (INIS)

    Dunbar, I.H.; Fermandjian, J.; Gauvain, J.

    1988-01-01

    The behavior of aerosols in a reactor containment vessel following a severe accident could be an important determinant of the accident source term to the environment. Various processes result in the deposition of the aerosol onto surfaces within the containment, from where they are much less likely to be released. Some of these processes are very sensitive to particle size, so it is important to model the aerosol growth processes: agglomeration and condensation. A number of computer codes have been written to model growth and deposition processes. They have been tested against each other in a series of code comparison exercises. These exercises have investigated sensitivities to physical and numerical assumptions and have also proved a useful means of quality control for the codes. Various exercises in which code predictions are compared with experimental results are now under way

  9. LFSC - Linac Feedback Simulation Code

    International Nuclear Information System (INIS)

    Ivanov, Valentin; Fermilab

    2008-01-01

    The computer program LFSC ( ) is a numerical tool for simulation beam based feedback in high performance linacs. The code LFSC is based on the earlier version developed by a collective of authors at SLAC (L.Hendrickson, R. McEwen, T. Himel, H. Shoaee, S. Shah, P. Emma, P. Schultz) during 1990-2005. That code was successively used in simulation of SLC, TESLA, CLIC and NLC projects. It can simulate as pulse-to-pulse feedback on timescale corresponding to 5-100 Hz, as slower feedbacks, operating in the 0.1-1 Hz range in the Main Linac and Beam Delivery System. The code LFSC is running under Matlab for MS Windows operating system. It contains about 30,000 lines of source code in more than 260 subroutines. The code uses the LIAR ('Linear Accelerator Research code') for particle tracking under ground motion and technical noise perturbations. It uses the Guinea Pig code to simulate the luminosity performance. A set of input files includes the lattice description (XSIF format), and plane text files with numerical parameters, wake fields, ground motion data etc. The Matlab environment provides a flexible system for graphical output

  10. Diagnostic Coding for Epilepsy.

    Science.gov (United States)

    Williams, Korwyn; Nuwer, Marc R; Buchhalter, Jeffrey R

    2016-02-01

    Accurate coding is an important function of neurologic practice. This contribution to Continuum is part of an ongoing series that presents helpful coding information along with examples related to the issue topic. Tips for diagnosis coding, Evaluation and Management coding, procedure coding, or a combination are presented, depending on which is most applicable to the subject area of the issue.

  11. Coding of Neuroinfectious Diseases.

    Science.gov (United States)

    Barkley, Gregory L

    2015-12-01

    Accurate coding is an important function of neurologic practice. This contribution to Continuum is part of an ongoing series that presents helpful coding information along with examples related to the issue topic. Tips for diagnosis coding, Evaluation and Management coding, procedure coding, or a combination are presented, depending on which is most applicable to the subject area of the issue.

  12. X-ray image coding

    International Nuclear Information System (INIS)

    1974-01-01

    The invention aims at decreasing the effect of stray radiation in X-ray images. This is achieved by putting a plate between source and object with parallel zones of alternating high and low absorption coefficients for X-radiation. The image is scanned with the help of electronic circuits which decode the signal space coded by the plate, thus removing the stray radiation

  13. CVSscan : Visualization of Code Evolution

    NARCIS (Netherlands)

    Voinea, Lucian; Telea, Alex; Wijk, Jarke J. van

    2005-01-01

    During the life cycle of a software system, the source code is changed many times. We study how developers can be enabled to get insight in these changes, in order to understand the status, history and structure better, as well as for instance the roles played by various contributors. We present

  14. Computer code abstract: NESTLE

    International Nuclear Information System (INIS)

    Turinsky, P.J.; Al-Chalabi, R.M.K.; Engrand, P.; Sarsour, H.N.; Faure, F.X.; Guo, W.

    1995-01-01

    NESTLE is a few-group neutron diffusion equation solver utilizing the nodal expansion method (NEM) for eigenvalue, adjoint, and fixed-source steady-state and transient problems. The NESTLE code solve the eigenvalue (criticality), eigenvalue adjoint, external fixed-source steady-state, and external fixed-source or eigenvalue initiated transient problems. The eigenvalue problem allows criticality searches to be completed, and the external fixed-source steady-state problem can search to achieve a specified power level. Transient problems model delayed neutrons via precursor groups. Several core properties can be input as time dependent. Two- or four-energy groups can be utilized, with all energy groups being thermal groups (i.e., upscatter exits) is desired. Core geometries modeled include Cartesian and hexagonal. Three-, two-, and one-dimensional models can be utilized with various symmetries. The thermal conditions predicted by the thermal-hydraulic model of the core are used to correct cross sections for temperature and density effects. Cross sections for temperature and density effects. Cross sections are parameterized by color, control rod state (i.e., in or out), and burnup, allowing fuel depletion to be modeled. Either a macroscopic or microscopic model may be employed

  15. Nonlinear theory of nonstationary low Mach number channel flows of freely cooling nearly elastic granular gases.

    Science.gov (United States)

    Meerson, Baruch; Fouxon, Itzhak; Vilenkin, Arkady

    2008-02-01

    We employ hydrodynamic equations to investigate nonstationary channel flows of freely cooling dilute gases of hard and smooth spheres with nearly elastic particle collisions. This work focuses on the regime where the sound travel time through the channel is much shorter than the characteristic cooling time of the gas. As a result, the gas pressure rapidly becomes almost homogeneous, while the typical Mach number of the flow drops well below unity. Eliminating the acoustic modes and employing Lagrangian coordinates, we reduce the hydrodynamic equations to a single nonlinear and nonlocal equation of a reaction-diffusion type. This equation describes a broad class of channel flows and, in particular, can follow the development of the clustering instability from a weakly perturbed homogeneous cooling state to strongly nonlinear states. If the heat diffusion is neglected, the reduced equation becomes exactly soluble, and the solution develops a finite-time density blowup. The blowup has the same local features at singularity as those exhibited by the recently found family of exact solutions of the full set of ideal hydrodynamic equations [I. Fouxon, Phys. Rev. E 75, 050301(R) (2007); I. Fouxon,Phys. Fluids 19, 093303 (2007)]. The heat diffusion, however, always becomes important near the attempted singularity. It arrests the density blowup and brings about previously unknown inhomogeneous cooling states (ICSs) of the gas, where the pressure continues to decay with time, while the density profile becomes time-independent. The ICSs represent exact solutions of the full set of granular hydrodynamic equations. Both the density profile of an ICS and the characteristic relaxation time toward it are determined by a single dimensionless parameter L that describes the relative role of the inelastic energy loss and heat diffusion. At L>1 the intermediate cooling dynamics proceeds as a competition between "holes": low-density regions of the gas. This competition resembles Ostwald

  16. Involvement of serotonin in the ventral tegmental area in thermoregulation of freely moving rats.

    Science.gov (United States)

    Ishiwata, Takayuki; Hasegawa, Hiroshi; Greenwood, Benjamin N

    2017-07-13

    We have recently reported that the serotonin (5-HT) projections from the midbrain's raphe nuclei that contains 5-HT cell bodies may play a role both in heat production and in heat loss. The purpose of the present study was to clarify the involvement of 5-HT in the ventral tegmental area (VTA), where 5-HT is suggested to participate in thermoregulation, using the combined methods of telemetry, microdialysis, and high performance liquid chromatography, with a special emphasis on regulation of the body temperature (T b ) in freely moving rats. First, we measured changes in T b , tail skin temperature (T tail ; an index of heat loss), heart rate (HR; an index of heat production), locomotor activity (Act), and levels of extracellular monoamines in the VTA during cold (5°C) or heat (35°C) exposure. Subsequently, we perfused citalopram (5-HT re-uptake inhibitor) into the VTA and measured the thermoregulatory parameters and monoamines release. Although T b , T tail , and HR changed during both exposures, significant changes in extracellular level of 5-HT (138.7±12.7% baseline, p<0.01), but not dopamine (DA) or noradrenaline (NA) were noted in the VTA only during heat exposure. In addition, perfusion of citalopram into the VTA increased extracellular 5-HT levels (221.0±52.2% baseline, p<0.01), but not DA or NA, while T b decreased from 37.4±0.1°C to 36.8±0.2°C (p<0.001),T tail increased from 26.3±0.4°C to 28.4±0.4°C (p<0.001), and HR and Act remained unchanged. Our results suggest that the VTA is a key area for thermoregulation, and 5-HT, but not DA or NA, modulates the heat loss system through action in the VTA. Copyright © 2017 Elsevier B.V. All rights reserved.

  17. Variable code gamma ray imaging system

    International Nuclear Information System (INIS)

    Macovski, A.; Rosenfeld, D.

    1979-01-01

    A gamma-ray source distribution in the body is imaged onto a detector using an array of apertures. The transmission of each aperture is modulated using a code such that the individual views of the source through each aperture can be decoded and separated. The codes are chosen to maximize the signal to noise ratio for each source distribution. These codes determine the photon collection efficiency of the aperture array. Planar arrays are used for volumetric reconstructions and circular arrays for cross-sectional reconstructions. 14 claims

  18. On the structure of Lattice code WIMSD-5B

    International Nuclear Information System (INIS)

    Kim, Won Young; Min, Byung Joo

    2004-03-01

    The WIMS-D code is a freely available thermal reactor physics lattice code used widely for thermal research and power reactor calculation. Now the code WIMS-AECL, developed on the basis of WIMS-D, has been used as one of lattice codes for the cell calculation in Canada and also, in 1998, the latest version WIMSD-5B is released for OECD/NEA Data Bank. While WIMS-KAERI was developed and has been used, originated from WIMS-D, in Korea, it was adjusted for the cell calculation of research reactor HANARO and so it has no confirmaty to CANDU reactor. Therefore, the code development applicable to cell calculation of CANDU reactor is necessary not only for technological independence and but also for the establishment of CANDU safety analysis system. A lattice code WIMSD-5B was analyzed in order to set the system of reactor physics computer codes, to be used in the assessment of void reactivity effect. In order to improve and validate WIMSD-5B code, the analysis of the structure of WIMSD-5B lattice code was made and so its structure, algorithm and the subroutines of WIMSD-5B were presented for the cluster type and the pij method modelling the CANDU-6 fuel

  19. M2Lite: An Open-source, Light-weight, Pluggable and Fast Proteome Discoverer MSF to mzIdentML Tool.

    Science.gov (United States)

    Aiyetan, Paul; Zhang, Bai; Chen, Lily; Zhang, Zhen; Zhang, Hui

    2014-04-28

    Proteome Discoverer is one of many tools used for protein database search and peptide to spectrum assignment in mass spectrometry-based proteomics. However, the inadequacy of conversion tools makes it challenging to compare and integrate its results to those of other analytical tools. Here we present M2Lite, an open-source, light-weight, easily pluggable and fast conversion tool. M2Lite converts proteome discoverer derived MSF files to the proteomics community defined standard - the mzIdentML file format. M2Lite's source code is available as open-source at https://bitbucket.org/paiyetan/m2lite/src and its compiled binaries and documentation can be freely downloaded at https://bitbucket.org/paiyetan/m2lite/downloads.

  20. Entropy Coding in HEVC

    OpenAIRE

    Sze, Vivienne; Marpe, Detlev

    2014-01-01

    Context-Based Adaptive Binary Arithmetic Coding (CABAC) is a method of entropy coding first introduced in H.264/AVC and now used in the latest High Efficiency Video Coding (HEVC) standard. While it provides high coding efficiency, the data dependencies in H.264/AVC CABAC make it challenging to parallelize and thus limit its throughput. Accordingly, during the standardization of entropy coding for HEVC, both aspects of coding efficiency and throughput were considered. This chapter describes th...

  1. Generalized concatenated quantum codes

    International Nuclear Information System (INIS)

    Grassl, Markus; Shor, Peter; Smith, Graeme; Smolin, John; Zeng Bei

    2009-01-01

    We discuss the concept of generalized concatenated quantum codes. This generalized concatenation method provides a systematical way for constructing good quantum codes, both stabilizer codes and nonadditive codes. Using this method, we construct families of single-error-correcting nonadditive quantum codes, in both binary and nonbinary cases, which not only outperform any stabilizer codes for finite block length but also asymptotically meet the quantum Hamming bound for large block length.

  2. Rateless feedback codes

    DEFF Research Database (Denmark)

    Sørensen, Jesper Hemming; Koike-Akino, Toshiaki; Orlik, Philip

    2012-01-01

    This paper proposes a concept called rateless feedback coding. We redesign the existing LT and Raptor codes, by introducing new degree distributions for the case when a few feedback opportunities are available. We show that incorporating feedback to LT codes can significantly decrease both...... the coding overhead and the encoding/decoding complexity. Moreover, we show that, at the price of a slight increase in the coding overhead, linear complexity is achieved with Raptor feedback coding....

  3. Spectrum of relativistic radiation from electric charges and dipoles as they fall freely into a black hole

    Energy Technology Data Exchange (ETDEWEB)

    Shatskiy, A. A., E-mail: shatskiy@asc.rssi.ru; Novikov, I. D.; Lipatova, L. N. [Russian Academy of Sciences, Astrospace Center, Lebedev Physical Institute (Russian Federation)

    2013-06-15

    The motion of electric charges and dipoles falling radially and freely into a Schwarzschild black hole is considered. The inverse effect of the electromagnetic fields on the black hole is neglected. Since the dipole is assumed to be a point particle, the deformation due to the action of tidal forces on it is neglected. According to the theorem stating that 'black holes have no hair', the multipole electromagnetic fields should be completely radiated as a multipole falls into a black hole. The electromagnetic radiation power spectrum for these multipoles (a monopole and a dipole) has been found. Differences have been found in the spectra for different orientations of the falling dipole. A general method has been developed to find the radiated multipole electromagnetic fields for multipoles (including higher-order multipoles-quadrupoles, etc.) falling freely into a black hole. The calculated electromagnetic spectra can be compared with observational data from stellar-mass and smaller black holes.

  4. The computer code system for reactor radiation shielding in design of nuclear power plant

    International Nuclear Information System (INIS)

    Li Chunhuai; Fu Shouxin; Liu Guilian

    1995-01-01

    The computer code system used in reactor radiation shielding design of nuclear power plant includes the source term codes, discrete ordinate transport codes, Monte Carlo and Albedo Monte Carlo codes, kernel integration codes, optimization code, temperature field code, skyshine code, coupling calculation codes and some processing codes for data libraries. This computer code system has more satisfactory variety of codes and complete sets of data library. It is widely used in reactor radiation shielding design and safety analysis of nuclear power plant and other nuclear facilities

  5. Advanced video coding systems

    CERN Document Server

    Gao, Wen

    2015-01-01

    This comprehensive and accessible text/reference presents an overview of the state of the art in video coding technology. Specifically, the book introduces the tools of the AVS2 standard, describing how AVS2 can help to achieve a significant improvement in coding efficiency for future video networks and applications by incorporating smarter coding tools such as scene video coding. Topics and features: introduces the basic concepts in video coding, and presents a short history of video coding technology and standards; reviews the coding framework, main coding tools, and syntax structure of AV

  6. Coding for dummies

    CERN Document Server

    Abraham, Nikhil

    2015-01-01

    Hands-on exercises help you learn to code like a pro No coding experience is required for Coding For Dummies,your one-stop guide to building a foundation of knowledge inwriting computer code for web, application, and softwaredevelopment. It doesn't matter if you've dabbled in coding or neverwritten a line of code, this book guides you through the basics.Using foundational web development languages like HTML, CSS, andJavaScript, it explains in plain English how coding works and whyit's needed. Online exercises developed by Codecademy, a leading online codetraining site, help hone coding skill

  7. Effect of chain wheel shape on crank torque, freely chosen pedal rate, and physiological responses during submaximal cycling

    DEFF Research Database (Denmark)

    Hansen, Ernst Albin; Jensen, Kurt; Hallen, Jostein

    2009-01-01

    at preset pedal rates as well as resulting in lower pedal rate and metabolic response at freely chosen pedal rate. Ten trained cyclists (mean+/-SD: 27+/-3 years of age, 182+/-4 cm tall, 77.5+/-7.0 kg of body mass, and peak oxygen uptake of 61.7+/-4.4 ml kg(-1) min(-1)) cycled with a Biopace and a circular...... chain wheel at 180 W at 65 and 90 rpm for recording of crank torque profiles, and at their freely chosen pedal rate for recording of pedal rate and metabolic response, including oxygen uptake and blood lactate concentration. Crank torque profiles were similar between the two chain wheels during cycling...... at preset pedal rates. During cycling at the freely chosen pedal rate (being 93+/-6 and 93+/-4 rpm for the Biopace and circular chain wheel, respectively), blood lactate concentration was significantly different between the two chain wheels, being on average 0.2 mmol l(-1) lower with the Biopace chain wheel...

  8. The RETRAN-03 computer code

    International Nuclear Information System (INIS)

    Paulsen, M.P.; McFadden, J.H.; Peterson, C.E.; McClure, J.A.; Gose, G.C.; Jensen, P.J.

    1991-01-01

    The RETRAN-03 code development effort is designed to overcome the major theoretical and practical limitations associated with the RETRAN-02 computer code. The major objectives of the development program are to extend the range of analyses that can be performed with RETRAN, to make the code more dependable and faster running, and to have a more transportable code. The first two objectives are accomplished by developing new models and adding other models to the RETRAN-02 base code. The major model additions for RETRAN-03 are as follows: implicit solution methods for the steady-state and transient forms of the field equations; additional options for the velocity difference equation; a new steady-state initialization option for computer low-power steam generator initial conditions; models for nonequilibrium thermodynamic conditions; and several special-purpose models. The source code and the environmental library for RETRAN-03 are written in standard FORTRAN 77, which allows the last objective to be fulfilled. Some models in RETRAN-02 have been deleted in RETRAN-03. In this paper the changes between RETRAN-02 and RETRAN-03 are reviewed

  9. Supervised Transfer Sparse Coding

    KAUST Repository

    Al-Shedivat, Maruan

    2014-07-27

    A combination of the sparse coding and transfer learn- ing techniques was shown to be accurate and robust in classification tasks where training and testing objects have a shared feature space but are sampled from differ- ent underlying distributions, i.e., belong to different do- mains. The key assumption in such case is that in spite of the domain disparity, samples from different domains share some common hidden factors. Previous methods often assumed that all the objects in the target domain are unlabeled, and thus the training set solely comprised objects from the source domain. However, in real world applications, the target domain often has some labeled objects, or one can always manually label a small num- ber of them. In this paper, we explore such possibil- ity and show how a small number of labeled data in the target domain can significantly leverage classifica- tion accuracy of the state-of-the-art transfer sparse cod- ing methods. We further propose a unified framework named supervised transfer sparse coding (STSC) which simultaneously optimizes sparse representation, domain transfer and classification. Experimental results on three applications demonstrate that a little manual labeling and then learning the model in a supervised fashion can significantly improve classification accuracy.

  10. Performance evaluation based on data from code reviews

    OpenAIRE

    Andrej, Sekáč

    2016-01-01

    Context. Modern code review tools such as Gerrit have made available great amounts of code review data from different open source projects as well as other commercial projects. Code reviews are used to keep the quality of produced source code under control but the stored data could also be used for evaluation of the software development process. Objectives. This thesis uses machine learning methods for an approximation of review expert’s performance evaluation function. Due to limitations in ...

  11. GOC: General Orbit Code

    International Nuclear Information System (INIS)

    Maddox, L.B.; McNeilly, G.S.

    1979-08-01

    GOC (General Orbit Code) is a versatile program which will perform a variety of calculations relevant to isochronous cyclotron design studies. In addition to the usual calculations of interest (e.g., equilibrium and accelerated orbits, focusing frequencies, field isochronization, etc.), GOC has a number of options to calculate injections with a charge change. GOC provides both printed and plotted output, and will follow groups of particles to allow determination of finite-beam properties. An interactive PDP-10 program called GIP, which prepares input data for GOC, is available. GIP is a very easy and convenient way to prepare complicated input data for GOC. Enclosed with this report are several microfiche containing source listings of GOC and other related routines and the printed output from a multiple-option GOC run

  12. Discussion on LDPC Codes and Uplink Coding

    Science.gov (United States)

    Andrews, Ken; Divsalar, Dariush; Dolinar, Sam; Moision, Bruce; Hamkins, Jon; Pollara, Fabrizio

    2007-01-01

    This slide presentation reviews the progress that the workgroup on Low-Density Parity-Check (LDPC) for space link coding. The workgroup is tasked with developing and recommending new error correcting codes for near-Earth, Lunar, and deep space applications. Included in the presentation is a summary of the technical progress of the workgroup. Charts that show the LDPC decoder sensitivity to symbol scaling errors are reviewed, as well as a chart showing the performance of several frame synchronizer algorithms compared to that of some good codes and LDPC decoder tests at ESTL. Also reviewed is a study on Coding, Modulation, and Link Protocol (CMLP), and the recommended codes. A design for the Pseudo-Randomizer with LDPC Decoder and CRC is also reviewed. A chart that summarizes the three proposed coding systems is also presented.

  13. Locally orderless registration code

    DEFF Research Database (Denmark)

    2012-01-01

    This is code for the TPAMI paper "Locally Orderless Registration". The code requires intel threadding building blocks installed and is provided for 64 bit on mac, linux and windows.......This is code for the TPAMI paper "Locally Orderless Registration". The code requires intel threadding building blocks installed and is provided for 64 bit on mac, linux and windows....

  14. Decoding Codes on Graphs

    Indian Academy of Sciences (India)

    Shannon limit of the channel. Among the earliest discovered codes that approach the. Shannon limit were the low density parity check (LDPC) codes. The term low density arises from the property of the parity check matrix defining the code. We will now define this matrix and the role that it plays in decoding. 2. Linear Codes.

  15. Manually operated coded switch

    International Nuclear Information System (INIS)

    Barnette, J.H.

    1978-01-01

    The disclosure related to a manually operated recodable coded switch in which a code may be inserted, tried and used to actuate a lever controlling an external device. After attempting a code, the switch's code wheels must be returned to their zero positions before another try is made

  16. Coding For Compression Of Low-Entropy Data

    Science.gov (United States)

    Yeh, Pen-Shu

    1994-01-01

    Improved method of encoding digital data provides for efficient lossless compression of partially or even mostly redundant data from low-information-content source. Method of coding implemented in relatively simple, high-speed arithmetic and logic circuits. Also increases coding efficiency beyond that of established Huffman coding method in that average number of bits per code symbol can be less than 1, which is the lower bound for Huffman code.

  17. Joint design of QC-LDPC codes for coded cooperation system with joint iterative decoding

    Science.gov (United States)

    Zhang, Shunwai; Yang, Fengfan; Tang, Lei; Ejaz, Saqib; Luo, Lin; Maharaj, B. T.

    2016-03-01

    In this paper, we investigate joint design of quasi-cyclic low-density-parity-check (QC-LDPC) codes for coded cooperation system with joint iterative decoding in the destination. First, QC-LDPC codes based on the base matrix and exponent matrix are introduced, and then we describe two types of girth-4 cycles in QC-LDPC codes employed by the source and relay. In the equivalent parity-check matrix corresponding to the jointly designed QC-LDPC codes employed by the source and relay, all girth-4 cycles including both type I and type II are cancelled. Theoretical analysis and numerical simulations show that the jointly designed QC-LDPC coded cooperation well combines cooperation gain and channel coding gain, and outperforms the coded non-cooperation under the same conditions. Furthermore, the bit error rate performance of the coded cooperation employing jointly designed QC-LDPC codes is better than those of random LDPC codes and separately designed QC-LDPC codes over AWGN channels.

  18. Coding in Muscle Disease.

    Science.gov (United States)

    Jones, Lyell K; Ney, John P

    2016-12-01

    Accurate coding is critically important for clinical practice and research. Ongoing changes to diagnostic and billing codes require the clinician to stay abreast of coding updates. Payment for health care services, data sets for health services research, and reporting for medical quality improvement all require accurate administrative coding. This article provides an overview of administrative coding for patients with muscle disease and includes a case-based review of diagnostic and Evaluation and Management (E/M) coding principles in patients with myopathy. Procedural coding for electrodiagnostic studies and neuromuscular ultrasound is also reviewed.

  19. QR Codes 101

    Science.gov (United States)

    Crompton, Helen; LaFrance, Jason; van 't Hooft, Mark

    2012-01-01

    A QR (quick-response) code is a two-dimensional scannable code, similar in function to a traditional bar code that one might find on a product at the supermarket. The main difference between the two is that, while a traditional bar code can hold a maximum of only 20 digits, a QR code can hold up to 7,089 characters, so it can contain much more…

  20. Distributed Video Coding: Iterative Improvements

    DEFF Research Database (Denmark)

    Luong, Huynh Van

    Nowadays, emerging applications such as wireless visual sensor networks and wireless video surveillance are requiring lightweight video encoding with high coding efficiency and error-resilience. Distributed Video Coding (DVC) is a new coding paradigm which exploits the source statistics...... and noise modeling and also learn from the previous decoded Wyner-Ziv (WZ) frames, side information and noise learning (SING) is proposed. The SING scheme introduces an optical flow technique to compensate the weaknesses of the block based SI generation and also utilizes clustering of DCT blocks to capture...... cross band correlation and increase local adaptivity in noise modeling. During decoding, the updated information is used to iteratively reestimate the motion and reconstruction in the proposed motion and reconstruction reestimation (MORE) scheme. The MORE scheme not only reestimates the motion vectors...