WorldWideScience

Sample records for song elements motifs

  1. Element repertoire: change and development with age in Whitethroat Sylvia communis song

    DEFF Research Database (Denmark)

    Balsby, T.J.S.; Hansen, P.

    2010-01-01

    Song repertoires are often important determining factors in sexual selection. In several species, older males have larger repertoires than 1-year-old males. The development of large song repertoires by an individual is, however, poorly understood. We studied song element repertoire changes in five...... based on the first-year repertoire, which may explain why large song repertoires are mainly expressed by males at least 2 years of age. It would appear, therefore, that song element repertoire size could be a reliable signal of male age....

  2. RNA motif search with data-driven element ordering.

    Science.gov (United States)

    Rampášek, Ladislav; Jimenez, Randi M; Lupták, Andrej; Vinař, Tomáš; Brejová, Broňa

    2016-05-18

    In this paper, we study the problem of RNA motif search in long genomic sequences. This approach uses a combination of sequence and structure constraints to uncover new distant homologs of known functional RNAs. The problem is NP-hard and is traditionally solved by backtracking algorithms. We have designed a new algorithm for RNA motif search and implemented a new motif search tool RNArobo. The tool enhances the RNAbob descriptor language, allowing insertions in helices, which enables better characterization of ribozymes and aptamers. A typical RNA motif consists of multiple elements and the running time of the algorithm is highly dependent on their ordering. By approaching the element ordering problem in a principled way, we demonstrate more than 100-fold speedup of the search for complex motifs compared to previously published tools. We have developed a new method for RNA motif search that allows for a significant speedup of the search of complex motifs that include pseudoknots. Such speed improvements are crucial at a time when the rate of DNA sequencing outpaces growth in computing. RNArobo is available at http://compbio.fmph.uniba.sk/rnarobo .

  3. RegRNA: an integrated web server for identifying regulatory RNA motifs and elements

    OpenAIRE

    Huang, Hsi-Yuan; Chien, Chia-Hung; Jen, Kuan-Hua; Huang, Hsien-Da

    2006-01-01

    Numerous regulatory structural motifs have been identified as playing essential roles in transcriptional and post-transcriptional regulation of gene expression. RegRNA is an integrated web server for identifying the homologs of regulatory RNA motifs and elements against an input mRNA sequence. Both sequence homologs and structural homologs of regulatory RNA motifs can be recognized. The regulatory RNA motifs supported in RegRNA are categorized into several classes: (i) motifs in mRNA 5′-untra...

  4. Sequential dynamics in the motif of excitatory coupled elements

    Science.gov (United States)

    Korotkov, Alexander G.; Kazakov, Alexey O.; Osipov, Grigory V.

    2015-11-01

    In this article a new model of motif (small ensemble) of neuron-like elements is proposed. It is built with the use of the generalized Lotka-Volterra model with excitatory couplings. The main motivation for this work comes from the problems of neuroscience where excitatory couplings are proved to be the predominant type of interaction between neurons of the brain. In this paper it is shown that there are two modes depending on the type of coupling between the elements: the mode with a stable heteroclinic cycle and the mode with a stable limit cycle. Our second goal is to examine the chaotic dynamics of the generalized three-dimensional Lotka-Volterra model.

  5. Elemental analyses on porcelains of Tang and Song Dynasties excavated from Yongjinwan zone at Jinsha site

    Science.gov (United States)

    Xia, C. D.; Ge, L. J.; Liu, M. T.; Zhu, J. J.; An, Z.; Bai, B.

    2018-02-01

    The work presented here carried out elemental analyses on 60 porcelain shards of Tang and Song Dynasties, unearthed from Yongjinwan zone at Jinsha site, Sichuan, China, using a combination of PIXE and RBS methods. Six shards from Liulichang kiln site and 6 from Shifangtang kiln site were also analyzed as reference materials. The factor analyses for the elemental compositions in the bodies and glazes of the total 72 porcelain shards have been performed to explore their similarities and differences. Combining the results of factor analyses on elements in bodies and glazes and the classification by traditional archaeological criteria, the provenances for most of shards unearthed from Yongjinwan zone in Jinsha site could be determined. Majority of shards with a Qiong-kiln style were found as products of Liulichang kiln, this is consistent with Yongjinwan's geographical location and social environment, i.e., Yongjinwan was a suburban settlement nearest to Liulichang kiln in ancient times. Although both products of Liulichang kiln and Shifangtang kiln belonged to Qiong-kiln system and they shared a similar appearance such as red body and celadon glaze, there were distinct differences in chemical composition which could be unraveled by PIXE-RBS measurements and factor analysis. There were no apparent differences of chemical compositions for the same kinds of body and glaze between Tang and Song Dynasties, which may suggest that raw materials and production techniques for the same kinds of body and glaze continued between Tang and Song Dynasties. The chemical characteristics for each kind of body and glaze and the correlations between element composition and porcelain appearance were also obtained in this work.

  6. ROMANIAN TRADITIONAL MOTIF ELEMENT OF MODERNITY IN CLOTHING

    Directory of Open Access Journals (Sweden)

    ŞUTEU Marius Darius

    2017-05-01

    Full Text Available In this paper are presented the phases for improving from an aesthetic point of view a clothing item, the T-shirt for women using software design patterns, computerised graphics and textile different modern technologies including: industrial embroidery, digital printing, sublimation. In the first phase a documentation was prepared in the University of Oradea and traditional motif was selected from a collection comprising a number of Romanian traditional motifs from different parts of the country and were reintepreted and stylized whilst preserving the symbolism and color range specified to the area. For the styling phase was used CorelDraw vector graphics program that allows changing the shape, size and color of the drawings without affecting the identity of the pattern. The embroidery was done using BERNINA Embroidery Software Designer Plus Software. This software allows you to export the model to any domestic or industrial embroidery machine regardless of brand. Finally we observed the resistance of the printed and embroided model to various: elasticity, resistance to abrasion and a sensory analysis on the preservation of color. After testing we noticed the imprint resistance applied to the fabric, resulting in a quality that makes possible to keep the Romanian traditional motif from generation to generation.

  7. Romanian traditional motif - element of modernity in clothing

    Science.gov (United States)

    Doble, L.; Stan, O.; Suteu, M. D.; Albu, A.; Bohm, G.; Tsatsarou-Michalaki, A.; Gialinou, E.

    2017-10-01

    In this paper are presented the phases for improving from an aesthetic point of view a clothing item, the jacket respectively, with a straight cut for women using software design patterns, computerised graphics and textile different modern technologies including: industrial embroidery, digital printing, sublimation. In the first phase a documentation was prepared in the Ethnographic Museum of Transylvania from Cluj Napoca where more traditional motifs were selected specific to Transylvania etnographic region and were reintepreted and stylized whilst preserving the symbolism and color range specified to the area. For the styling phase was used CorelDraw vector graphics program that allows changing the shape, size and color of the drawings without affecting the identity of the pattern. In the patterns design phase Gemini CAD software was used and for the modeling and model development Optitex software was used. The part for garnishing the model was performed using Embrodery machine software reproducing the stylized motif identically. In order to obtain a significantly improved aesthetic look and an added artistic value the pattern chosen for the jacket was done using a combination of modern textile technologies. This has allowed the realization of a particular texture on the surface of the designed product, demonstrating that traditional patterns can be reintepreted in modern clothing

  8. SECRETS OF SONG VIDEO

    Directory of Open Access Journals (Sweden)

    Chernyshov Alexander V.

    2014-04-01

    Full Text Available The article focuses on the origins of the song videos as TV and Internet-genre. In addition, it considers problems of screen images creation depending on the musical form and the text of a songs in connection with relevant principles of accent and phraseological video editing and filming techniques as well as with additional frames and sound elements.

  9. Secbase: database module to retrieve secondary structure elements with ligand binding motifs.

    Science.gov (United States)

    Koch, Oliver; Cole, Jason; Block, Peter; Klebe, Gerhard

    2009-10-01

    Secbase is presented as a novel extension module of Relibase. It integrates the information about secondary structure elements into the retrieval facilities of Relibase. The data are accessible via the extended Relibase user interface, and integrated retrieval queries can be addressed using an extended version of Reliscript. The primary information about alpha-helices and beta-sheets is used as provided by the PDB. Furthermore, a uniform classification of all turn families, based on recent clustering methods, and a new helix assignment that is based on this turn classification has been included. Algorithms to analyze the geometric features of helices and beta-strands were also implemented. To demonstrate the performance of the Secbase implementation, some application examples are given. They provide new insights into the involvement of secondary structure elements in ligand binding. A survey of water molecules detected next to the N-terminus of helices is analyzed to show their involvement in ligand binding. Additionally, the parallel oriented NH groups at the alpha-helix N-termini provide special binding motifs to bind particular ligand functional groups with two adjacent oxygen atoms, e.g., as found in negatively charged carboxylate or phosphate groups, respectively. The present study also shows that the specific structure of the first turn of alpha-helices provides a suitable explanation for stabilizing charged structures. The magnitude of the overall helix macrodipole seems to have no or only a minor influence on binding. Furthermore, an overview of the involvement of secondary structure elements with the recognition of some important endogenous ligands such as cofactors shows some distinct preference for particular binding motifs and amino acids.

  10. Rainforests as concert halls for birds: Are reverberations improving sound transmission of long song elements?

    DEFF Research Database (Denmark)

    Nemeth, Erwin; Dabelsteen, Torben; Pedersen, Simon Boel

    2006-01-01

    that longer sounds are less attenuated. The results indicate that higher sound pressure level is caused by superimposing reflections. It is suggested that this beneficial effect of reverberations explains interspecific birdsong differences in element length. Transmission paths with stronger reverberations......In forests reverberations have probably detrimental and beneficial effects on avian communication. They constrain signal discrimination by masking fast repetitive sounds and they improve signal detection by elongating sounds. This ambivalence of reflections for animal signals in forests is similar...... to the influence of reverberations on speech or music in indoor sound transmission. Since comparisons of sound fields of forests and concert halls have demonstrated that reflections can contribute in both environments a considerable part to the energy of a received sound, it is here assumed that reverberations...

  11. Song mimicry, song dialects, and behavioural context of songs in ...

    African Journals Online (AJOL)

    Straw-tailed Whydahs, Vidua fischeri, mimic the songs and calls of their host species, the Purple Grenadier, Granatina ianthinogaster, and they also have songs that do not mimic the hosts. Neighbouring male whydahs match song themes with each other, while males a few km distant have another set of song themes.

  12. The Runt domain of AML1 (RUNX1) binds a sequence-conserved RNA motif that mimics a DNA element.

    Science.gov (United States)

    Fukunaga, Junichi; Nomura, Yusuke; Tanaka, Yoichiro; Amano, Ryo; Tanaka, Taku; Nakamura, Yoshikazu; Kawai, Gota; Sakamoto, Taiichi; Kozu, Tomoko

    2013-07-01

    AML1 (RUNX1) is a key transcription factor for hematopoiesis that binds to the Runt-binding double-stranded DNA element (RDE) of target genes through its N-terminal Runt domain. Aberrations in the AML1 gene are frequently found in human leukemia. To better understand AML1 and its potential utility for diagnosis and therapy, we obtained RNA aptamers that bind specifically to the AML1 Runt domain. Enzymatic probing and NMR analyses revealed that Apt1-S, which is a truncated variant of one of the aptamers, has a CACG tetraloop and two stem regions separated by an internal loop. All the isolated aptamers were found to contain the conserved sequence motif 5'-NNCCAC-3' and 5'-GCGMGN'N'-3' (M:A or C; N and N' form Watson-Crick base pairs). The motif contains one AC mismatch and one base bulged out. Mutational analysis of Apt1-S showed that three guanines of the motif are important for Runt binding as are the three guanines of RDE, which are directly recognized by three arginine residues of the Runt domain. Mutational analyses of the Runt domain revealed that the amino acid residues used for Apt1-S binding were similar to those used for RDE binding. Furthermore, the aptamer competed with RDE for binding to the Runt domain in vitro. These results demonstrated that the Runt domain of the AML1 protein binds to the motif of the aptamer that mimics DNA. Our findings should provide new insights into RNA function and utility in both basic and applied sciences.

  13. "Bird Song Metronomics": Isochronous Organization of Zebra Finch Song Rhythm.

    Science.gov (United States)

    Norton, Philipp; Scharff, Constance

    2016-01-01

    The human capacity for speech and vocal music depends on vocal imitation. Songbirds, in contrast to non-human primates, share this vocal production learning with humans. The process through which birds and humans learn many of their vocalizations as well as the underlying neural system exhibit a number of striking parallels and have been widely researched. In contrast, rhythm, a key feature of language, and music, has received surprisingly little attention in songbirds. Investigating temporal periodicity in bird song has the potential to inform the relationship between neural mechanisms and behavioral output and can also provide insight into the biology and evolution of musicality. Here we present a method to analyze birdsong for an underlying rhythmic regularity. Using the intervals from one note onset to the next as input, we found for each bird an isochronous sequence of time stamps, a "signal-derived pulse," or pulse(S), of which a subset aligned with all note onsets of the bird's song. Fourier analysis corroborated these results. To determine whether this finding was just a byproduct of the duration of notes and intervals typical for zebra finches but not dependent on the individual duration of elements and the sequence in which they are sung, we compared natural songs to models of artificial songs. Note onsets of natural song deviated from the pulse(S) significantly less than those of artificial songs with randomized note and gap durations. Thus, male zebra finch song has the regularity required for a listener to extract a perceived pulse (pulse(P)), as yet untested. Strikingly, in our study, pulses(S) that best fit note onsets often also coincided with the transitions between sub-note elements within complex notes, corresponding to neuromuscular gestures. Gesture durations often equaled one or more pulse(S) periods. This suggests that gesture duration constitutes the basic element of the temporal hierarchy of zebra finch song rhythm, an interesting parallel

  14. CORE-SINEs: eukaryotic short interspersed retroposing elements with common sequence motifs.

    Science.gov (United States)

    Gilbert, N; Labuda, D

    1999-03-16

    A 65-bp "core" sequence is dispersed in hundreds of thousands copies in the human genome. This sequence was found to constitute the central segment of a group of short interspersed elements (SINEs), referred to as mammalian-wide interspersed repeats, that proliferated before the radiation of placental mammals. Here, we propose that the core identifies an ancient tRNA-like SINE element, which survived in different lineages such as mammals, reptiles, birds, and fish, as well as mollusks, presumably for >550 million years. This element gave rise to a number of sequence families (CORE-SINEs), including mammalian-wide interspersed repeats, whose distinct 3' ends are shared with different families of long interspersed elements (LINEs). The evolutionary success of the generic CORE-SINE element can be related to the recruitment of the internal promoter from highly transcribed host RNA as well as to its capacity to adapt to changing retropositional opportunities by sequence exchange with actively amplifying LINEs. It reinforces the notion that the very existence of SINEs depends on the cohabitation with both LINEs and the host genome.

  15. The heptanucleotide motif GAGACGC is a key component of a cis-acting promoter element that is critical for SnSAG1 expression in Sarcocystis neurona.

    Science.gov (United States)

    Gaji, Rajshekhar Y; Howe, Daniel K

    2009-07-01

    The apicomplexan parasite Sarcocystis neurona undergoes a complex process of intracellular development, during which many genes are temporally regulated. The described study was undertaken to begin identifying the basic promoter elements that control gene expression in S. neurona. Sequence analysis of the 5'-flanking region of five S. neurona genes revealed a conserved heptanucleotide motif GAGACGC that is similar to the WGAGACG motif described upstream of multiple genes in Toxoplasma gondii. The promoter region for the major surface antigen gene SnSAG1, which contains three heptanucleotide motifs within 135 bases of the transcription start site, was dissected by functional analysis using a dual luciferase reporter assay. These analyses revealed that a minimal promoter fragment containing all three motifs was sufficient to drive reporter molecule expression, with the presence and orientation of the 5'-most heptanucleotide motif being absolutely critical for promoter function. Further studies should help to identify additional sequence elements important for promoter function and for controlling gene expression during intracellular development by this apicomplexan pathogen.

  16. Drinking songs: alcohol effects on learned song of zebra finches.

    Directory of Open Access Journals (Sweden)

    Christopher R Olson

    Full Text Available Speech impairment is one of the most intriguing and least understood effects of alcohol on cognitive function, largely due to the lack of data on alcohol effects on vocalizations in the context of an appropriate experimental model organism. Zebra finches, a representative songbird and a premier model for understanding the neurobiology of vocal production and learning, learn song in a manner analogous to how humans learn speech. Here we show that when allowed access, finches readily drink alcohol, increase their blood ethanol concentrations (BEC significantly, and sing a song with altered acoustic structure. The most pronounced effects were decreased amplitude and increased entropy, the latter likely reflecting a disruption in the birds' ability to maintain the spectral structure of song under alcohol. Furthermore, specific syllables, which have distinct acoustic structures, were differentially influenced by alcohol, likely reflecting a diversity in the neural mechanisms required for their production. Remarkably, these effects on vocalizations occurred without overt effects on general behavioral measures, and importantly, they occurred within a range of BEC that can be considered risky for humans. Our results suggest that the variable effects of alcohol on finch song reflect differential alcohol sensitivity of the brain circuitry elements that control different aspects of song production. They also point to finches as an informative model for understanding how alcohol affects the neuronal circuits that control the production of learned motor behaviors.

  17. Discovery of cell-type specific DNA motif grammar in cis-regulatory elements using random Forest.

    Science.gov (United States)

    Wang, Xin; Lin, Peijie; Ho, Joshua W K

    2018-01-19

    It has been observed that many transcription factors (TFs) can bind to different genomic loci depending on the cell type in which a TF is expressed in, even though the individual TF usually binds to the same core motif in different cell types. How a TF can bind to the genome in such a highly cell-type specific manner, is a critical research question. One hypothesis is that a TF requires co-binding of different TFs in different cell types. If this is the case, it may be possible to observe different combinations of TF motifs - a motif grammar - located at the TF binding sites in different cell types. In this study, we develop a bioinformatics method to systematically identify DNA motifs in TF binding sites across multiple cell types based on published ChIP-seq data, and address two questions: (1) can we build a machine learning classifier to predict cell-type specificity based on motif combinations alone, and (2) can we extract meaningful cell-type specific motif grammars from this classifier model. We present a Random Forest (RF) based approach to build a multi-class classifier to predict the cell-type specificity of a TF binding site given its motif content. We applied this RF classifier to two published ChIP-seq datasets of TF (TCF7L2 and MAX) across multiple cell types. Using cross-validation, we show that motif combinations alone are indeed predictive of cell types. Furthermore, we present a rule mining approach to extract the most discriminatory rules in the RF classifier, thus allowing us to discover the underlying cell-type specific motif grammar. Our bioinformatics analysis supports the hypothesis that combinatorial TF motif patterns are cell-type specific.

  18. The song of Iopas

    Directory of Open Access Journals (Sweden)

    T. E. Kinsey

    1979-06-01

    Full Text Available The Song of Iopas plays an important part in the development of the relationship between Dido and Aeneas. There is no symbolism in the Song and no attempt to arouse Roman prejudice against the Carthaginians.

  19. Happy Handwashing Song

    Centers for Disease Control (CDC) Podcasts

    This song (sung to the tune of Happy Birthday) encourages kids to wash their hands with soap and water to keep germs away. The song is sung twice through, the recommended length of time to wash hands. Sing along!

  20. Language in Childhood Song.

    Science.gov (United States)

    Bondi, Edith F.

    The purpose of this study was to design a strategy for teaching young children the information expressed in words of selected songs. Out of five classes of from 25 to 30 seven-year-old students, 86 students were selected for observation. The investigator chose 18 songs from a song textbook to be taught for the first 12 weeks of school. During the…

  1. Song forms from Kustilj and neighbouring villages

    Directory of Open Access Journals (Sweden)

    Kristina PLANJANIN SIMIC

    2011-01-01

    Full Text Available Song-forms constitute one of the four sub-categories of folklore within the classification of children’s folklore The song-forms reflect children's responses in relation to nature. They are dedicated to animals that children find interesting and dear. In the distant past, they were performed at fixed hours and days, on certain places and there was a number of their repetition, but over the past centuries, they lost the initial position and became the motive for play and recreational activities for children. In the examples collected for this paper, what can be observed and singled out are a few basic melodic and rhythmic motifs that also occur in children's songs around the world, the connection between children's rhythm with the text, simplicity and the syllable of melody as well as the fact that the tone of these songs often relates to archaic diatonic infra-pentatonic series. In addition to educational and entertainment features, these songs reveal a mentality, way of thinking, creativity and spiritual development of a generation that will grow up at the beginning of the 21st century.

  2. Does twitter song amplitude signal male arousal in redwings (Turdus iliacus)?

    DEFF Research Database (Denmark)

    Lampe, H.M.; Balsby, T.J.S.; Espmark, Y.O.

    2010-01-01

    Bird songs may vary in amplitude for several reasons. Variations due to differences in environmental conditions are well known but whether signal information varies with song amplitude is less well known. In some species quiet songs are heard as a soft twitter. These twitter songs are common...... in Turdus species and may be used during escalated close range encounters when a quiet song will attract less attention from others. Male redwings (T. iliacus) sing a terminating twitter part that is quieter and highly variable both between and within males compared with the introductory motif part....... The twitter song of redwings, however, is often louder than the twitter in other Turdus species, especially during escalated song encounters. The seasonal variation in twitter duration also suggests that the twitter may signal increased aggression. We tested how male redwings responded to an assumed...

  3. Great American Work Songs.

    Science.gov (United States)

    Daniels, Elva S.

    1983-01-01

    A teaching unit uses the songs of sailors, loggers, coal miners, and other workers to illustrate how the United States was built in the nineteenth century. Words and music for seven songs are given, along with classroom activities to help children understand occupations and industries during that time. (PP)

  4. Happy Handwashing Song

    Centers for Disease Control (CDC) Podcasts

    2010-02-25

    This song (sung to the tune of Happy Birthday) encourages kids to wash their hands with soap and water to keep germs away. The song is sung twice through, the recommended length of time to wash hands. Sing along!  Created: 2/25/2010 by National Center for Preparedness, Detection, and Control of Infectious Diseases (NCPDCID), Division of Global Migration and Quarantine (DGMQ).   Date Released: 2/25/2010.

  5. A Marshmallow and a Song

    Science.gov (United States)

    Kenney, Susan

    2009-01-01

    Music exists in time. One cannot get to the end of the song before going through the song. Is this significant for helping children wait? And can the way we present a singing game activity intensify the delay of what might be a gratifying moment at the end of the song? In this article, the author reflects on whether music can teach delayed…

  6. The Power of Song

    DEFF Research Database (Denmark)

    Sørensen, Bent

    families) is featured in a new arrangement by Jim Lauderdale and bookended on the CD by Woody Guthrie’s “Deportee (Plane Wreck at Los Gatos)” about Mexican migrants being forcibly repatriated by airplane, and “Brother, Can You Spare a Dime”, a song of urban poverty and potential charity from 1930...

  7. Ivan Zajc's Bulgarian Songs

    Directory of Open Access Journals (Sweden)

    Stefanka Georgieva

    2017-01-01

    Full Text Available On the basis of newly discovered historiographic documents, this study traces the »biography« of Ivan Zajc’s Bulgarian songs. It specifies some disputed details with regard to the numbering and structure of two vocal cycles; it submits a transcript of a music sheet of the song Robstvo (The Yoke, op. 843a and the original of an unknown composition Majko kleta (Poor Mother on the verses of the Bulgarian poet Ivan Vazov which has not been registered by Hubert Pettan in Zajc’s catalogue of works. This exploration, together with the historiographic focus, highlights the connection of these opuses with the Bulgarian poetry which gained wide popularity through the anthology Bulgarian Songs by August Harambašić. Indeed, some details which Zajc indicated on the title pages of his scores, lead to this assumption. At the same time, the spread of the songs in Bulgaria indicates the connection of the Croatian composer with Bulgarian musicians, choral societies, schools etc., as a result of which in the first decade of the 20th century Zagreb’s Hrvatski glazbeni zavod became an attractive educational centre for many young Bulgarian people. Ivan Zajc’s Bulgarian Songs have not only enriched the artistic repertoire of Bulgarian choral societies. They outline one of the lines of active multicultural transfer between Bulgaria and Croatia on the border between the last decades of the 19th and the beginning of the 20th centuries. The melodies of his marches, creating the spirit of the struggles for national liberation of Bulgarian nation, have become part of the newly created national musical culture and have been often accepted as Bulgarian in their origin.

  8. “Bird Song Metronomics”: Isochronous Organization of Zebra Finch Song Rhythm

    Science.gov (United States)

    Norton, Philipp; Scharff, Constance

    2016-01-01

    The human capacity for speech and vocal music depends on vocal imitation. Songbirds, in contrast to non-human primates, share this vocal production learning with humans. The process through which birds and humans learn many of their vocalizations as well as the underlying neural system exhibit a number of striking parallels and have been widely researched. In contrast, rhythm, a key feature of language, and music, has received surprisingly little attention in songbirds. Investigating temporal periodicity in bird song has the potential to inform the relationship between neural mechanisms and behavioral output and can also provide insight into the biology and evolution of musicality. Here we present a method to analyze birdsong for an underlying rhythmic regularity. Using the intervals from one note onset to the next as input, we found for each bird an isochronous sequence of time stamps, a “signal-derived pulse,” or pulseS, of which a subset aligned with all note onsets of the bird's song. Fourier analysis corroborated these results. To determine whether this finding was just a byproduct of the duration of notes and intervals typical for zebra finches but not dependent on the individual duration of elements and the sequence in which they are sung, we compared natural songs to models of artificial songs. Note onsets of natural song deviated from the pulseS significantly less than those of artificial songs with randomized note and gap durations. Thus, male zebra finch song has the regularity required for a listener to extract a perceived pulse (pulseP), as yet untested. Strikingly, in our study, pulsesS that best fit note onsets often also coincided with the transitions between sub-note elements within complex notes, corresponding to neuromuscular gestures. Gesture durations often equaled one or more pulseS periods. This suggests that gesture duration constitutes the basic element of the temporal hierarchy of zebra finch song rhythm, an interesting parallel to the

  9. Song 7, 'A Seeing off Song'

    OpenAIRE

    Hu Qianma

    2011-01-01

    .wav audio file This song says, please be careful on your way. When you leave, I sincerely bless you. When you come back, I’ll restrain the dog to allow you to enter my home. Please don’t forget the people who love you. We bless and support you constantly. 这首歌的歌意为,在你的路上要小心。在你离别的时候我真心实意地祝福你。当你回来的时候我会为你挡着狗让你进入我的家。不要忘记爱你的人们。我们时常都祝福和支持你。 གླུ་འདིའི་ནང་དོན་ནི་ཁྱོད་ཀྱི་ལམ་ནང་དུ་སེམས་ཆུང་བྱོས། ཁྱོད་འགྲོ་བའི་དུས་སུ་ངས་སེམས་པ་རྣམ་དག་གིས་ཁྱོད་ལ་སྨོན་ལམ་འདེབས། ཁྱོད་ཕྱིར་ལོག་པའི་དུས་སུ་ངས་ཁྱི་བཀ...

  10. Blessed with song

    CERN Multimedia

    2008-01-01

    The Morriston Orpheus Choir from Swansea sing in the CERN control center.The Morriston Orpheus Choir from Swansea were joined by the Welsh First Minister Rhodri Morgan at the LHC control room on Sunday 12 October. Lyn Evans, a fellow Welshman, was excited to have them here at CERN. "The control room has been somewhat quieter recently than on the 10 September," he said later in his speech at the LHC inauguration ceremony, "but last week, some fellow countrymen of mine, the wonderful Morriston Orpheus choir from Wales, paid us a visit and blessed the LHC with song."

  11. Vocal Communication: Decoding Sexy Songs.

    Science.gov (United States)

    Gahr, Manfred

    2018-04-02

    Male birds communicate sexual motivation via song performance, and receiving females might eventually respond to such 'ornaments'. A new study now shows that female zebra finches have a specialized higher order sensory (forebrain) region that preferably responds to the males' mating songs. Copyright © 2018 Elsevier Ltd. All rights reserved.

  12. Finding occurrences of melodic segments in folk songs employing symbolic similarity measures

    NARCIS (Netherlands)

    Janssen, Berit; van Kranenburg, P.; Volk, A.

    2017-01-01

    Much research has been devoted to the classification of folk songs, revealing that variants are recognised based on salient melodic segments, such as phrases and motifs, while other musical material in a melody might vary considerably. In order to judge similarity of melodies on the level of melodic

  13. Slangs in Beyonce Knowles' Songs

    OpenAIRE

    Elia Masa Gintings, Christina Septiani Manurung and

    2015-01-01

    This study is based on sociolinguistics problems. It deals with the use of slang.The writer focuses on Beyonce Knowles's songs lyrics as the scope of data. Theobjectives of the study were to find out the types of slang are used in BeyonceKnowles' songs and to reason for the use of the types of slang in BeyonceKnowles' songs. The data that support this study by using descriptive qualitativedata by reading some references related to the subject matters. The findingsshowed Abbreviation and Baby'...

  14. Slave songs: Codes of resistance

    OpenAIRE

    Bayer, Sidney Konrad

    2010-01-01

    When slaves were forcibly taken from their homes in Africa and brought to North America to live, work, and die in servitude, they brought with them their culture. This included music and dance, which had been used for generations to express their feelings. Africans still use songs to criticize, to protest, for social commentary, and to resist oppression. Slaves used a variety of means to protest and resist their condition; for example, secret meetings, songs which encouraged escape and sabota...

  15. Prenatal exposure of mice to diethylstilbestrol disrupts T-cell differentiation by regulating Fas/Fas ligand expression through estrogen receptor element and nuclear factor-κB motifs.

    Science.gov (United States)

    Singh, Narendra P; Singh, Udai P; Nagarkatti, Prakash S; Nagarkatti, Mitzi

    2012-11-01

    Prenatal exposure to diethylstilbestrol (DES) is known to cause altered immune functions and increased susceptibility to autoimmune disease in humans. In the current study, we investigated the effect of prenatal exposure to DES on thymocyte differentiation involving apoptotic pathways. Prenatal DES exposure caused thymic atrophy, apoptosis, and up-regulation of Fas and Fas ligand (FasL) expression in thymocytes. To examine the mechanism underlying DES-mediated regulation of Fas and FasL, we performed luciferase assays using T cells transfected with luciferase reporter constructs containing full-length Fas or FasL promoters. There was significant luciferase induction in the presence of Fas or FasL promoters after DES exposure. Further analysis demonstrated the presence of several cis-regulatory motifs on both Fas and FasL promoters. When DES-induced transcription factors were analyzed, estrogen receptor element (ERE), nuclear factor κB (NF-κB), nuclear factor of activated T cells (NF-AT), and activator protein-1 motifs on the Fas promoter, as well as ERE, NF-κB, and NF-AT motifs on the FasL promoter, showed binding affinity with the transcription factors. Electrophoretic mobility-shift assays were performed to verify the binding affinity of cis-regulatory motifs of Fas or FasL promoters with transcription factors. There was shift in mobility of probes (ERE or NF-κB2) of both Fas and FasL in the presence of nuclear proteins from DES-treated cells, and the shift was specific to DES because these probes failed to shift their mobility in the presence of nuclear proteins from vehicle-treated cells. Together, the current study demonstrates that prenatal exposure to DES triggers significant alterations in apoptotic molecules expressed on thymocytes, which may affect T-cell differentiation and cause long-term effects on the immune functions.

  16. Reading the Song of Songs through a spiritual direction lens

    Directory of Open Access Journals (Sweden)

    Judy E. Lam

    2015-08-01

    Full Text Available Research on the use of the Song of Songs in spiritual direction is rare; yet, the Song of Songs (or Canticle of Canticles is a highly conducive case as it provides in nuce the poetics, lyrics, erotics, and aesthetics of human and divine love which is found nowhere else in Scripture. This article draws on these unique features, integrates the biblical and the experiential, and offers a poetics-praxis paradigm for use in contemporary spiritual praxis. With the poem’s metaphorical vineyard (a figurative term for the beloved herself serving as hermeneutical key, the beloved’s experience of love is interpreted through a multifaceted reading that is intrinsic to the poem, namely: eros [yearning]; mythos [searching]; mustikos [finding]; and kosmos [birthing]. In following the inner dynamism and dramatic tensions across the eight chapters of the Song, the fourfold reading traces the beloved’s transformation from a neglected vineyard (Can 1:6 to a generative vineyard (Can 8:12. The article concludes that transformation in love is a journey from depletion (the giving away of self towards deification (the giving of self in love, and suggests tending one’s own vineyard as a living testament to divine love and a living sacrament in the world.

  17. Temporal motifs in time-dependent networks

    International Nuclear Information System (INIS)

    Kovanen, Lauri; Karsai, Márton; Kaski, Kimmo; Kertész, János; Saramäki, Jari

    2011-01-01

    Temporal networks are commonly used to represent systems where connections between elements are active only for restricted periods of time, such as telecommunication, neural signal processing, biochemical reaction and human social interaction networks. We introduce the framework of temporal motifs to study the mesoscale topological–temporal structure of temporal networks in which the events of nodes do not overlap in time. Temporal motifs are classes of similar event sequences, where the similarity refers not only to topology but also to the temporal order of the events. We provide a mapping from event sequences to coloured directed graphs that enables an efficient algorithm for identifying temporal motifs. We discuss some aspects of temporal motifs, including causality and null models, and present basic statistics of temporal motifs in a large mobile call network

  18. BUILDING VOCABULARY USING POP SONGS

    Directory of Open Access Journals (Sweden)

    author Rahmatika Kayyis

    2015-01-01

    Full Text Available The objective of the study is to find out whether there is a significant difference between the vocabulary mastery of first semester students taughtusing English pop songs and that taught without using English pop songs as a medium. This study involved 64 students of first semesterof STKIP Muhammadiyah Pringsewu Lampung in the academic year of 2012/2013 as the objects of the study. The result of the study shows there is a significant difference in the student’s vocabulary mastery between the experimental group who are taughtusing English pop songs and that taught without using English pop songs as a medium.The mean of post test score of the experimental group is 16.93 while the mean score of the control group is 14.54. The result of t-test shows that t-observed value which is higher than the t-value of the table (2.572>1.99, with a probability value of 0.008 which is lower than the significance level (0.008 < 0.05. In conclusion, the use of English pop songscould improve the students’ vocabulary mastery.Keywords: Vocabulary, English Pop Songs

  19. CompariMotif: quick and easy comparisons of sequence motifs.

    Science.gov (United States)

    Edwards, Richard J; Davey, Norman E; Shields, Denis C

    2008-05-15

    CompariMotif is a novel tool for making motif-motif comparisons, identifying and describing similarities between regular expression motifs. CompariMotif can identify a number of different relationships between motifs, including exact matches, variants of degenerate motifs and complex overlapping motifs. Motif relationships are scored using shared information content, allowing the best matches to be easily identified in large comparisons. Many input and search options are available, enabling a list of motifs to be compared to itself (to identify recurring motifs) or to datasets of known motifs. CompariMotif can be run online at http://bioware.ucd.ie/ and is freely available for academic use as a set of open source Python modules under a GNU General Public License from http://bioinformatics.ucd.ie/shields/software/comparimotif/

  20. Large-scale discovery of promoter motifs in Drosophila melanogaster.

    Directory of Open Access Journals (Sweden)

    Thomas A Down

    2007-01-01

    Full Text Available A key step in understanding gene regulation is to identify the repertoire of transcription factor binding motifs (TFBMs that form the building blocks of promoters and other regulatory elements. Identifying these experimentally is very laborious, and the number of TFBMs discovered remains relatively small, especially when compared with the hundreds of transcription factor genes predicted in metazoan genomes. We have used a recently developed statistical motif discovery approach, NestedMICA, to detect candidate TFBMs from a large set of Drosophila melanogaster promoter regions. Of the 120 motifs inferred in our initial analysis, 25 were statistically significant matches to previously reported motifs, while 87 appeared to be novel. Analysis of sequence conservation and motif positioning suggested that the great majority of these discovered motifs are predictive of functional elements in the genome. Many motifs showed associations with specific patterns of gene expression in the D. melanogaster embryo, and we were able to obtain confident annotation of expression patterns for 25 of our motifs, including eight of the novel motifs. The motifs are available through Tiffin, a new database of DNA sequence motifs. We have discovered many new motifs that are overrepresented in D. melanogaster promoter regions, and offer several independent lines of evidence that these are novel TFBMs. Our motif dictionary provides a solid foundation for further investigation of regulatory elements in Drosophila, and demonstrates techniques that should be applicable in other species. We suggest that further improvements in computational motif discovery should narrow the gap between the set of known motifs and the total number of transcription factors in metazoan genomes.

  1. V. Tormis: "Bridge of Song / Brian Hunt

    Index Scriptorium Estoniae

    Hunt, Brian

    1997-01-01

    Uuest heliplaadist "V. Tormis: "Bridge of Song" - Bridge of Song; Singing aboard ship; Brides Farewell; Kihnu Island Wedding Songs; 17 Estonian Wedding Songs; Three Estonian Game Songs; Four Estonian Lullabies. Estonian Radio Choir / Toomas Kapten. Finlandia 4509 96937-2; 56:52 DDD; "People of Kalevala" - God protect us from war; Vespian Winter; Eagle Flew From the North East; Plague Memory; Vainamoinen's Words of Wisdom; The Seventeenth Rune of Kalevala. National Male Choir of Estonia. Finlandia 0630 12245-2; 56:52 DDD

  2. Humpback whale song: A new review

    Science.gov (United States)

    Frankel, Adam S.

    2003-04-01

    The humpback whale song has been described and investigated since the early 1970s. Much has been learned about the humpback whale social structure, but the understanding of the song and its function remains elusive. The hierarchical nature of the song structure was described early on: Songs can be sung for a long period, apparently by males, and primarily during the mating season. However, singers also become physically competitive, suggesting alternative mating strategies. There are a number of unique structural features of song. Its structure evolves over time and combination. The nature of song evolution strongly implies cultural transmission. Song structure appears to be shared within an entire population, even though there appears to be little interchange of individuals between sub populations. Despite over thirty years of inquiry there are still numerous unanswered questions: Why is the song structure so complex? Is song a sexual advertisement, an acoustic space mediation mechanism, or both? How do females choose mates, or do they? What drives song evolution, and why is there so much variation in the rate of change? Are there nonreproductive functions of song? What prompts a male to begin or end singing? Our current understanding and the outstanding questions yet to be answered will be reviewed.

  3. Cover song identification by sequence alignment algorithms

    Science.gov (United States)

    Wang, Chih-Li; Zhong, Qian; Wang, Szu-Ying; Roychowdhury, Vwani

    2011-10-01

    Content-based music analysis has drawn much attention due to the rapidly growing digital music market. This paper describes a method that can be used to effectively identify cover songs. A cover song is a song that preserves only the crucial melody of its reference song but different in some other acoustic properties. Hence, the beat/chroma-synchronous chromagram, which is insensitive to the variation of the timber or rhythm of songs but sensitive to the melody, is chosen. The key transposition is achieved by cyclically shifting the chromatic domain of the chromagram. By using the Hidden Markov Model (HMM) to obtain the time sequences of songs, the system is made even more robust. Similar structure or length between the cover songs and its reference are not necessary by the Smith-Waterman Alignment Algorithm.

  4. Motor Control of Drosophila Courtship Song

    Directory of Open Access Journals (Sweden)

    Troy R. Shirangi

    2013-11-01

    Full Text Available Many animals utilize acoustic signals—or songs—to attract mates. During courtship, Drosophila melanogaster males vibrate a wing to produce trains of pulses and extended tone, called pulse and sine song, respectively. Courtship songs in the genus Drosophila are exceedingly diverse, and different song features appear to have evolved independently of each other. How the nervous system allows such diversity to evolve is not understood. Here, we identify a wing muscle in D. melanogaster (hg1 that is uniquely male-enlarged. The hg1 motoneuron and the sexually dimorphic development of the hg1 muscle are required specifically for the sine component of the male song. In contrast, the motoneuron innervating a sexually monomorphic wing muscle, ps1, is required specifically for a feature of pulse song. Thus, individual wing motor pathways can control separate aspects of courtship song and may provide a “modular” anatomical substrate for the evolution of diverse songs.

  5. 'Don't save her'- Sigmund Freud meets Project Pat: the rescue motif in hip-hop.

    Science.gov (United States)

    Fulmer, Richard H

    2008-08-01

    Freud originally explicated the dynamics of rescue wishes by describing men who fell in love with prostitutes. He saw this attempt at attachment as driven by the man's wish to repay his parents for giving him life. Many subsequent writers shift this emphasis, seeing rescue wishes as motivated by aggressive oedipal competition with the father. This article highlights the attachment aspects of Freud's original conception and traces how writers in the last three decades use the family romance rather than Oedipus as a model to view rescue wishes as having a more tender aspect. Rescue wishes are especially characteristic of the developmental stage of young adulthood. They at once attempt to repay the parental debt the young adult feels and serve as practice for the vicissitudes of the couple bond and the benign sacrifices of parenthood. Popular culture contains many vivid examples of Freud 's original description of the rescue-motif. A detailed examination of the rap song, Don't save her, demonstrates all the elements of Freud's original conception and the interpersonal risks of the rescue relationship. Three additional rap songs by other artists are briefly analyzed to show the extensive occurrence of the wish to rescue and its psychic and interpersonal dangers.

  6. Songs of a Medicine Woman. Native Language and Culture Project.

    Science.gov (United States)

    Pratt, Alice; Bennett, Ruth, Ed.

    Traditional and contemporary Hupa songs as sung by a Hupa medicine woman in her 70's are collected in this booklet. Songs are presented in Hupa and English on facing pages that are illustrated with pen and ink drawings. The four songs are "Flower Dance Song" and "Kick Dance Song" (both for traditional religious ceremonial…

  7. Stylistic analysis of songs in beverage advertisement

    Institute of Scientific and Technical Information of China (English)

    周双卉

    2012-01-01

    With the development of the advertisement,people tend to study the stylistic analysis of it.However,in this paper,the focus will be on the songs in beverage advertisement.The analysis will be focused on the features of the beverage advertisement songs and the stylistics of it.The aim of the paper is to improve the people and the scholars' understanding of the beverage advertisement songs.

  8. Song decrystallization in adult zebra finches does not require the song nucleus NIf.

    Science.gov (United States)

    Roy, Arani; Mooney, Richard

    2009-08-01

    In adult male zebra finches, transecting the vocal nerve causes previously stable (i.e., crystallized) song to slowly degrade, presumably because of the resulting distortion in auditory feedback. How and where distorted feedback interacts with song motor networks to induce this process of song decrystallization remains unknown. The song premotor nucleus HVC is a potential site where auditory feedback signals could interact with song motor commands. Although the forebrain nucleus interface of the nidopallium (NIf) appears to be the primary auditory input to HVC, NIf lesions made in adult zebra finches do not trigger song decrystallization. One possibility is that NIf lesions do not interfere with song maintenance, but do compromise the adult zebra finch's ability to express renewed vocal plasticity in response to feedback perturbations. To test this idea, we bilaterally lesioned NIf and then transected the vocal nerve in adult male zebra finches. We found that bilateral NIf lesions did not prevent nerve section-induced song decrystallization. To test the extent to which the NIf lesions disrupted auditory processing in the song system, we made in vivo extracellular recordings in HVC and a downstream anterior forebrain pathway (AFP) in NIf-lesioned birds. We found strong and selective auditory responses to the playback of the birds' own song persisted in HVC and the AFP following NIf lesions. These findings suggest that auditory inputs to the song system other than NIf, such as the caudal mesopallium, could act as a source of auditory feedback signals to the song motor network.

  9. Analisis Unsur Matematika pada Motif Sulam Usus

    Directory of Open Access Journals (Sweden)

    Fredi Ganda Putra

    2017-12-01

    Full Text Available Based on interviews with researchers sources said that the beginning of the intestine embroidery is an art of genuine crafts. Called the intestine embroidery because this technique is a technique of combining a strand of cloth resembling the intestine formed according to the pattern by means of embroidered using a thread. Intestinal embroidery techniques were originally used to create a cover of the women's customary wardrobe of Lampung or often referred to as bebe. But not many people in Lampung, especially people who live in Lampung are still many who do not know and recognize the intestine embroidery because most only know tapis only characteristic of Lampung, besides that there are other cultural results that is embroidered intestine. There are still many who do not know that the intestine motif there is a knowledge of mathematics. The researcher's problem formulation is whether there are mathematical elements contained in the intestine embroidery motif based on the concept of geometry. The purpose of this study is to determine whether there are elements of mathematics contained in the intestine motif based on the concept of geometry. Subjects in this study consisted of 4 people obtained by purposive sampling technique. From the results of data analysis conducted by using descriptive analysis and discussion as follows: (1 Intestinal embroidery motif contains the meaning of mathematics and culture or often called Etnomatematika. On the meaning of culture there is a link between the embroidery intestine with a culture that has been there before as the existence of cultural linkage between Hindu belief Buddhism and there are similarities of motifs and decorative patterns contained in the motif embroidery intestine with ornamental variety in Indonesia. (2 The relationship between the intestine with mathematical motifs there are elements of mathematics such as geometry elements in the form of geometry of dimension one and dimension two, and the

  10. Song repertoire size correlates with measures of body size in Eurasian blackbirds

    DEFF Research Database (Denmark)

    Hesler, Nana; Mundry, Roger; Sacher, Thomas

    2012-01-01

    In most oscine bird species males possess a repertoire of different song patterns. The size of these repertoires is assumed to serve as an honest signal of male quality. The Eurasian blackbird’s (Turdus merula) song contains a large repertoire of different element types with a flexible song...... organisation. Here we investigated whether repertoire size in Eurasian blackbirds correlates with measures of body size, namely length of wing, 8th primary, beak and tarsus. So far, very few studies have investigated species with large repertoires and a flexible song organisation in this context. We found...... positive correlations, meaning that larger males had larger repertoires. Larger males may have better fighting abilities and, thus, advantages in territorial defence. Larger structural body size may also reflect better conditions during early development. Therefore, under the assumption that body size...

  11. MHC motif viewer

    DEFF Research Database (Denmark)

    Rapin, Nicolas Philippe Jean-Pierre; Hoof, Ilka; Lund, Ole

    2008-01-01

    . Algorithms that predict which peptides MHC molecules bind have recently been developed and cover many different alleles, but the utility of these algorithms is hampered by the lack of tools for browsing and comparing the specificity of these molecules. We have, therefore, developed a web server, MHC motif....... A special viewing feature, MHC fight, allows for display of the specificity of two different MHC molecules side by side. We show how the web server can be used to discover and display surprising similarities as well as differences between MHC molecules within and between different species. The MHC motif...

  12. Humpback whale, Megaptera novaeangliae, song during the ...

    African Journals Online (AJOL)

    Madagascar Conservation & Development ... Song is made up of single units combined together into phrases, which are repeated to make up themes. A song ... to educate the communities of the Gulf of Tribugá about the importance of conservation, and to advocate for stricter guidelines for safe whale-watching practices.

  13. A duetting perspective on avian song learning.

    Science.gov (United States)

    Rivera-Cáceres, Karla D; Templeton, Christopher N

    2017-12-25

    Avian song learning has a rich history of study and has become the preeminent system for understanding the ontogeny of vocal communication in animals. Song learning in birds has many parallels with human language learning, ranging from the neural mechanisms involved to the importance of social factors in shaping signal acquisition. While much has been learned about the process of song learning, virtually all of the research done to date has focused on temperate species, where often only one sex (the male) sings. Duetting species, in which both males and females learn to sing and learn to combine their songs into temporally coordinated joint displays, could provide many insights into the processes by which vocal learning takes place. Here we highlight three key features of song learning-neuroendocrine control mechanisms, timing and life history stages of song acquisition, and the role of social factors in song selection and use-that have been elucidated from species where only males sing, and compare these with duetting species. We summarize what is known about song learning in duetting species and then provide several suggestions for fruitful directions for future research. We suggest that focusing research efforts on duetting species could significantly advance our understanding of vocal learning in birds and further cement the importance of avian species as models for understanding human conversations and the processes of vocal learning more broadly. Copyright © 2017 Elsevier B.V. All rights reserved.

  14. Neural and Behavioral Correlates of Song Prosody

    Science.gov (United States)

    Gordon, Reyna Leigh

    2010-01-01

    This dissertation studies the neural basis of song, a universal human behavior. The relationship of words and melodies in the perception of song at phonological, semantic, melodic, and rhythmic levels of processing was investigated using the fine temporal resolution of Electroencephalography (EEG). The observations reported here may shed light on…

  15. The Rhetorical Dimensions of Popular Song.

    Science.gov (United States)

    Winebrenner, T. C.

    Communication scholars have recently focused attention on songs as artifacts of popular culture. Current literature implies that the contexts of music communication are defined by the relationships that songs establish between artists and their audience: persuasive, expressive, and commercial. As the commercialization of music is an inherently…

  16. Using Songs in Developing Intercultural Competence

    Directory of Open Access Journals (Sweden)

    Liliia Shayakhmetova

    2017-09-01

    Full Text Available Songs in teaching English are not used to the full extent. To confirm this, we created a set of exercises based on the use of songs to form socio-cultural and regional knowledge, to familiarize students with the culture and way of life of Great Britain, to gain a deeper understanding of the representatives of this linguistic cultural community. The next step was carrying out a survey on revealing the effectiveness of using songs in EFL class, more precisely their effect on the developing of intercultural competence. Following methods were used to conduct the survey: the questionnaire of teachers and students, to determine the role of English songs in the developing of intercultural competence; the analysis of English language course books to determine the presence of songs focusing on their cultural significance; Life in the UK Test, a test to check the knowledge of the history and culture of Britain. The results of the research showed the expediency of using song to develop intercultural competence. Moreover, use of songs aroused interest among students; they expressed the opinion that lyrics have a much deeper meaning and varied information than they thought before using them in English classes. They expressed a desire to continue using songs during classes in keeping with this approach.

  17. Song and Male Quality in Prairie Warblers

    Science.gov (United States)

    Bruce E. Byers; Michael E. Akresh; David I. King; W. Koenig

    2016-01-01

    To determine if the songs of male prairie warblers could potentially reveal to female listeners information about the quality of singers, we compared various aspects of prairie warbler song structure and performance to attributes that might reflect a male singer's potential to enhance the fitness of his mate. We found that all the tested male attributes—arrival...

  18. Parole, Sintagmatik, dan Paradigmatik Motif Batik Mega Mendung

    Directory of Open Access Journals (Sweden)

    Rudi - Nababan

    2012-04-01

    Full Text Available ABSTRACT   Discussing traditional batik is related a lot to the organization system of fine arts element ac- companying it, either the pattern of the motif or the technique of the making. In this case, the motif of Mega Mendung Cirebon certainly has patterns and rules which are traditionally different from the other motifs in other areas. Through  semiotics analysis especially with Saussure and Pierce concept, it can be traced that batik with Cirebon motif, in this case Mega Mendung motif, has parole and langue system, as unique fine arts language in batik, and structure of visual syntagmatic and paradigmatic. In the context of batik motif as fine arts language, it is surely related to sign system as symbol and icon.       Keywords: visual semiotic, Cirebon’s batik.

  19. [Personal motif in art].

    Science.gov (United States)

    Gerevich, József

    2015-01-01

    One of the basic questions of the art psychology is whether a personal motif is to be found behind works of art and if so, how openly or indirectly it appears in the work itself. Analysis of examples and documents from the fine arts and literature allow us to conclude that the personal motif that can be identified by the viewer through symbols, at times easily at others with more difficulty, gives an emotional plus to the artistic product. The personal motif may be found in traumatic experiences, in communication to the model or with other emotionally important persons (mourning, disappointment, revenge, hatred, rivalry, revolt etc.), in self-searching, or self-analysis. The emotions are expressed in artistic activity either directly or indirectly. The intention nourished by the artist's identity (Kunstwollen) may stand in the way of spontaneous self-expression, channelling it into hidden paths. Under the influence of certain circumstances, the artist may arouse in the viewer, consciously or unconsciously, an illusionary, misleading image of himself. An examination of the personal motif is one of the important research areas of art therapy.

  20. Male mice song syntax depends on social contexts and influences female preferences

    Directory of Open Access Journals (Sweden)

    Jonathan eChabout

    2015-04-01

    Full Text Available In 2005 Holy & Guo advanced the idea that male mice produce ultrasonic vocalizations (USV with some features similar to courtship songs of songbirds. Since then, studies showed that male mice emit USV songs in different contexts (sexual and other and possess a multisyllabic repertoire. Debate still exists for and against plasticity in their vocalizations. But the use of a multisyllabic repertoire can increase potential flexibility and information, in how elements are organized and recombined, namely syntax. In many bird species, modulating song syntax has ethological relevance for sexual behavior and mate preferences. In this study we exposed adult male mice to different social contexts and developed a new approach of analyzing their USVs based on songbird syntax analysis. We found that male mice modify their syntax, including specific sequences, length of sequence, repertoire composition, and spectral features, according to stimulus and social context. Males emit longer and simpler syllables and sequences when singing to females, but more complex syllables and sequences in response to fresh female urine. Playback experiments show that the females prefer the complex songs over the simpler ones. We propose the complex songs are to lure females in, whereas the directed simpler sequences are used for direct courtship. These results suggest that although mice have a much more limited ability of song modification, they could still be used as animal models for understanding some vocal communication features that songbirds are used for.

  1. Testosterone affects song modulation during simulated territorial intrusions in male black redstarts (Phoenicurus ochruros.

    Directory of Open Access Journals (Sweden)

    Beate Apfelbeck

    Full Text Available Although it has been suggested that testosterone plays an important role in resource allocation for competitive behavior, details of the interplay between testosterone, territorial aggression and signal plasticity are largely unknown. Therefore, we investigated if testosterone acts specifically on signals that communicate the motivation or ability of individuals to engage in competitive situations in a natural context. We studied the black redstart, a territorial songbird species, during two different life-cycle stages, the early breeding phase in spring and the non-breeding phase in fall. Male territory holders were implanted with the androgen receptor blocker flutamide (Flut and the aromatase inhibitor letrozole (Let to inhibit the action of testosterone and its estrogenic metabolites. Controls received a placebo treatment. Three days after implantation birds were challenged with a simulated territorial intrusion (STI. Song was recorded before, during and after the challenge. In spring, both treatment groups increased the number of elements sung in parts of their song in response to the STI. However, Flut/Let-implanted males reacted to the STI with a decreased maximum acoustic frequency of one song part, while placebo-implanted males did not. Instead, placebo-implanted males sang the atonal part of their song with a broader frequency range. Furthermore, placebo-, but not Flut/Let-implanted males, sang shorter songs with shorter pauses between parts in the STIs. During simulated intrusions in fall, when testosterone levels are naturally low in this species, males of both treatment groups sang similar to Flut/Let-implanted males during breeding. The results suggest that song sung during a territorial encounter is of higher competitive value than song sung in an undisturbed situation and may, therefore, convey information about the motivation or quality of the territory holder. We conclude that testosterone facilitates context-dependent changes

  2. Evolution and plasticity: Divergence of song discrimination is faster in birds with innate song than in song learners in Neotropical passerine birds.

    Science.gov (United States)

    Freeman, Benjamin G; Montgomery, Graham A; Schluter, Dolph

    2017-09-01

    Plasticity is often thought to accelerate trait evolution and speciation. For example, plasticity in birdsong may partially explain why clades of song learners are more diverse than related clades with innate song. This "song learning" hypothesis predicts that (1) differences in song traits evolve faster in song learners, and (2) behavioral discrimination against allopatric song (a proxy for premating reproductive isolation) evolves faster in song learners. We tested these predictions by analyzing acoustic traits and conducting playback experiments in allopatric Central American sister pairs of song learning oscines (N = 42) and nonlearning suboscines (N = 27). We found that nonlearners evolved mean acoustic differences slightly faster than did leaners, and that the mean evolutionary rate of song discrimination was 4.3 times faster in nonlearners than in learners. These unexpected results may be a consequence of significantly greater variability in song traits in song learners (by 54-79%) that requires song-learning oscines to evolve greater absolute differences in song before achieving the same level of behavioral song discrimination as nonlearning suboscines. This points to "a downside of learning" for the evolution of species discrimination, and represents an important example of plasticity reducing the rate of evolution and diversification by increasing variability. © 2017 The Author(s). Evolution © 2017 The Society for the Study of Evolution.

  3. Beyond Language: Metaphor as an Expressive Resource in the Song of Songs

    Directory of Open Access Journals (Sweden)

    Eleuterio R. Ruiz

    2015-04-01

    Full Text Available The starting point of this paper is the old debate on which kind of interpretation is more appropriate for the Song of Songs, namely, literal or allegorical, and to what extent. Treating the poem as a literary work and letting it speak for itself, metaphor emerges as the main expressive resource referring to a multi-dimensional reality. The analysis of metaphor in the Song of Songs, based on selected samples, reveals highly developed metaphoric speech in the poem, with images accumulating and interacting in multiple, concurrent and mutually enriching levels of meaning. Behind this complex intertwining of metaphors there emerges the main referent for the book as a whole. Metaphor, then, appears as a particularly adequate means of articulating both anthropological and theological discourse.Key words: Song of Songs, Metaphor, Love.

  4. Motif enrichment tool.

    Science.gov (United States)

    Blatti, Charles; Sinha, Saurabh

    2014-07-01

    The Motif Enrichment Tool (MET) provides an online interface that enables users to find major transcriptional regulators of their gene sets of interest. MET searches the appropriate regulatory region around each gene and identifies which transcription factor DNA-binding specificities (motifs) are statistically overrepresented. Motif enrichment analysis is currently available for many metazoan species including human, mouse, fruit fly, planaria and flowering plants. MET also leverages high-throughput experimental data such as ChIP-seq and DNase-seq from ENCODE and ModENCODE to identify the regulatory targets of a transcription factor with greater precision. The results from MET are produced in real time and are linked to a genome browser for easy follow-up analysis. Use of the web tool is free and open to all, and there is no login requirement. ADDRESS: http://veda.cs.uiuc.edu/MET/. © The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research.

  5. Humpback whale, Megaptera novaeangliae, song during the ...

    African Journals Online (AJOL)

    Christina E. Perazio. Psychology Department, University of Southern Mississippi, ... thors identified the Gulf of Tribugá as a breeding ground where no recordings of .... Three distinct themes (Figure 1) were found in each song, and these were ...

  6. Motif-role-fingerprints: the building-blocks of motifs, clustering-coefficients and transitivities in directed networks.

    Directory of Open Access Journals (Sweden)

    Mark D McDonnell

    Full Text Available Complex networks are frequently characterized by metrics for which particular subgraphs are counted. One statistic from this category, which we refer to as motif-role fingerprints, differs from global subgraph counts in that the number of subgraphs in which each node participates is counted. As with global subgraph counts, it can be important to distinguish between motif-role fingerprints that are 'structural' (induced subgraphs and 'functional' (partial subgraphs. Here we show mathematically that a vector of all functional motif-role fingerprints can readily be obtained from an arbitrary directed adjacency matrix, and then converted to structural motif-role fingerprints by multiplying that vector by a specific invertible conversion matrix. This result demonstrates that a unique structural motif-role fingerprint exists for any given functional motif-role fingerprint. We demonstrate a similar result for the cases of functional and structural motif-fingerprints without node roles, and global subgraph counts that form the basis of standard motif analysis. We also explicitly highlight that motif-role fingerprints are elemental to several popular metrics for quantifying the subgraph structure of directed complex networks, including motif distributions, directed clustering coefficient, and transitivity. The relationships between each of these metrics and motif-role fingerprints also suggest new subtypes of directed clustering coefficients and transitivities. Our results have potential utility in analyzing directed synaptic networks constructed from neuronal connectome data, such as in terms of centrality. Other potential applications include anomaly detection in networks, identification of similar networks and identification of similar nodes within networks. Matlab code for calculating all stated metrics following calculation of functional motif-role fingerprints is provided as S1 Matlab File.

  7. Using Song to Improve Students’ Vocabulary Mastery

    OpenAIRE

    Muflihah, Tatik

    2017-01-01

    Vocabulary mastery is one of the requirements for students to be able to communicate both in spoken and written. There are many ways to improve students’ vocabulary mastery used by the language teacher. This paper aims to examine the use of English song to motivate students in learning English. In addition, this concerns on the use of English song to improve students’ vocabulary mastery. The respondents were fifteen elementary students of community groups of orphans An-nur Surabaya. The data ...

  8. A speedup technique for (l, d-motif finding algorithms

    Directory of Open Access Journals (Sweden)

    Dinh Hieu

    2011-03-01

    Full Text Available Abstract Background The discovery of patterns in DNA, RNA, and protein sequences has led to the solution of many vital biological problems. For instance, the identification of patterns in nucleic acid sequences has resulted in the determination of open reading frames, identification of promoter elements of genes, identification of intron/exon splicing sites, identification of SH RNAs, location of RNA degradation signals, identification of alternative splicing sites, etc. In protein sequences, patterns have proven to be extremely helpful in domain identification, location of protease cleavage sites, identification of signal peptides, protein interactions, determination of protein degradation elements, identification of protein trafficking elements, etc. Motifs are important patterns that are helpful in finding transcriptional regulatory elements, transcription factor binding sites, functional genomics, drug design, etc. As a result, numerous papers have been written to solve the motif search problem. Results Three versions of the motif search problem have been proposed in the literature: Simple Motif Search (SMS, (l, d-motif search (or Planted Motif Search (PMS, and Edit-distance-based Motif Search (EMS. In this paper we focus on PMS. Two kinds of algorithms can be found in the literature for solving the PMS problem: exact and approximate. An exact algorithm identifies the motifs always and an approximate algorithm may fail to identify some or all of the motifs. The exact version of PMS problem has been shown to be NP-hard. Exact algorithms proposed in the literature for PMS take time that is exponential in some of the underlying parameters. In this paper we propose a generic technique that can be used to speedup PMS algorithms. Conclusions We present a speedup technique that can be used on any PMS algorithm. We have tested our speedup technique on a number of algorithms. These experimental results show that our speedup technique is indeed very

  9. Gender messages in contemporary popular Malay songs

    Directory of Open Access Journals (Sweden)

    Collin Jerome

    2013-07-01

    Full Text Available Gender has been an important area of research in the field of popular music studies. Numerous scholars have found that contemporary popular music functions as a locus of diverse constructions and expressions of gender. While most studies focus on content analyses of popular music, there is still a need for more research on audience’s perception of popular music’s messages. This study examined adult Malay listeners’ perceptions of gender messages in contemporary Malay songs. A total of 16 contemporary Malay songs were analysed using Fairclough’s (1992 method of text analysis. The content of the songs that conveyed messages about gender were the basis for analysis. The results showed that the messages revolve mainly around socially constructed gender roles and expectations in romantic relationships. Gender stereotypes are also used in the songs to reinforce men’s and women’s roles in romantic relationships. The results also showed that, while listeners acknowledge the songs’ messages about gender, their own perceptions of gender and what it means to be a gendered being in today’s world are neither represented nor discussed fully in the songs analysed. It is hoped the findings from this, particularly the mismatch between projected and perceived notions of gender, contribute to the field of popular Malay music studies in particular, and popular music studies in general where gender messages in popular songs and their influence on listeners’ perceptions of their own gender is concerned.

  10. DNA motif alignment by evolving a population of Markov chains.

    Science.gov (United States)

    Bi, Chengpeng

    2009-01-30

    Deciphering cis-regulatory elements or de novo motif-finding in genomes still remains elusive although much algorithmic effort has been expended. The Markov chain Monte Carlo (MCMC) method such as Gibbs motif samplers has been widely employed to solve the de novo motif-finding problem through sequence local alignment. Nonetheless, the MCMC-based motif samplers still suffer from local maxima like EM. Therefore, as a prerequisite for finding good local alignments, these motif algorithms are often independently run a multitude of times, but without information exchange between different chains. Hence it would be worth a new algorithm design enabling such information exchange. This paper presents a novel motif-finding algorithm by evolving a population of Markov chains with information exchange (PMC), each of which is initialized as a random alignment and run by the Metropolis-Hastings sampler (MHS). It is progressively updated through a series of local alignments stochastically sampled. Explicitly, the PMC motif algorithm performs stochastic sampling as specified by a population-based proposal distribution rather than individual ones, and adaptively evolves the population as a whole towards a global maximum. The alignment information exchange is accomplished by taking advantage of the pooled motif site distributions. A distinct method for running multiple independent Markov chains (IMC) without information exchange, or dubbed as the IMC motif algorithm, is also devised to compare with its PMC counterpart. Experimental studies demonstrate that the performance could be improved if pooled information were used to run a population of motif samplers. The new PMC algorithm was able to improve the convergence and outperformed other popular algorithms tested using simulated and biological motif sequences.

  11. Political Party Songs: Analysis of the Theme in a Song Topo By ...

    African Journals Online (AJOL)

    It was through these songs that followers of different political parties expressed their feelings of sadness, happiness or hope. This paper analyses one song titled Topo by the band named Setlamo which was said to be aligned to Basotho Congress Party. Informed by New Criticism theory, the paper analyses the lyrics in the ...

  12. When phonetics matters: creation and perception of female images in song folklore

    Directory of Open Access Journals (Sweden)

    Stashko Halyna

    2017-06-01

    Full Text Available This paper presents a stylistic analysis of female images in American song folklore in order to examine how sound symbolic language elements contribute to the construction of verbal images. The results obtained show the link between sound and meaning and how such phonetic means of stylistics as assonance, alliteration, and onomatopoeia function to reinforce the meanings of words or to set the mood typical of the characters. Their synergy helps create and interpret female images and provides relevant atmosphere and background to them in folk song texts.

  13. Comparative study on the song behavior and song control nuclei in male and female Mongolian larks (Melanocorypha mongolica).

    Science.gov (United States)

    Zhang, Xuebo; Zeng, Shaoju; Zhang, Xinwen; Zuo, Mingxue

    2011-09-12

    Songbirds can produce a remarkable diversity of songs, which is well-characterized learned behavior that reflects the basic processes of language learning in humans. As song control nuclei governing song behavior has been identified, bird song provides an excellent model to address the relationship between brain areas and their controlling behavior. The Mongolian lark (Melanocorypha mongolica), a species of the Alaudidae family, is well known for its elaborate singing and ability to learn new songs, even in adulthood. Here, we studied the singing behavior and underlying neural structures of the Mongolian lark in both sexes. We found that the sizes of song bouts and song phrases (song repertoires) in male Mongolian larks are extremely large, and that each song repertoire or phrase has a complex structure, comprising several different syllables that seldom appear in other types of song bouts. In accordance with these complex songs, Mongolian lark song control nuclei are well developed and can be easily detected by Nissl staining. In contrast to male Mongolian larks, females were not observed to sing. However, they possess significant song control nuclei with abundant neural connectivity within them despite their small sizes compared with males. These data provide new evidence that help further clarify the mechanisms by which songbirds sing. Our results also have implications for the evolution of complex birdsongs and song control nuclei in oscine birds. Copyright © 2011 Elsevier B.V. All rights reserved.

  14. Comparison of semiautomated bird song recognition with manual detection of recorded bird song samples

    Directory of Open Access Journals (Sweden)

    Lisa A. Venier

    2017-12-01

    Full Text Available Automated recording units are increasingly being used to sample wildlife populations. These devices can produce large amounts of data that are difficult to process manually. However, the information in the recordings can be summarized with semiautomated sound recognition software. Our objective was to assess the utility of the semiautomated bird song recognizers to produce data useful for conservation and sustainable forest management applications. We compared detection data generated from expert-interpreted recordings of bird songs collected with automated recording units and data derived from a semiautomated recognition process. We recorded bird songs at 109 sites in boreal forest in 2013 and 2014 using automated recording units. We developed bird-song recognizers for 10 species using Song Scope software (Wildlife Acoustics and each recognizer was used to scan a set of recordings that was also interpreted manually by an expert in birdsong identification. We used occupancy models to estimate the detection probability associated with each method. Based on these detection probability estimates we produced cumulative detection probability curves. In a second analysis we estimated detection probability of bird song recognizers using multiple 10-minute recordings for a single station and visit (35-63, 10-minute recordings in each of four one-week periods. Results show that the detection probability of most species from single 10-min recordings is substantially higher using expert-interpreted bird song recordings than using the song recognizer software. However, our results also indicate that detection probabilities for song recognizers can be significantly improved by using more than a single 10-minute recording, which can be easily done with little additional cost with the automate procedure. Based on these results we suggest that automated recording units and song recognizer software can be valuable tools to estimate detection probability and

  15. Convergent evolution and mimicry of protein linear motifs in host-pathogen interactions.

    Science.gov (United States)

    Chemes, Lucía Beatriz; de Prat-Gay, Gonzalo; Sánchez, Ignacio Enrique

    2015-06-01

    Pathogen linear motif mimics are highly evolvable elements that facilitate rewiring of host protein interaction networks. Host linear motifs and pathogen mimics differ in sequence, leading to thermodynamic and structural differences in the resulting protein-protein interactions. Moreover, the functional output of a mimic depends on the motif and domain repertoire of the pathogen protein. Regulatory evolution mediated by linear motifs can be understood by measuring evolutionary rates, quantifying positive and negative selection and performing phylogenetic reconstructions of linear motif natural history. Convergent evolution of linear motif mimics is widespread among unrelated proteins from viral, prokaryotic and eukaryotic pathogens and can also take place within individual protein phylogenies. Statistics, biochemistry and laboratory models of infection link pathogen linear motifs to phenotypic traits such as tropism, virulence and oncogenicity. In vitro evolution experiments and analysis of natural sequences suggest that changes in linear motif composition underlie pathogen adaptation to a changing environment. Copyright © 2015 Elsevier Ltd. All rights reserved.

  16. Long-range order in canary song.

    Science.gov (United States)

    Markowitz, Jeffrey E; Ivie, Elizabeth; Kligler, Laura; Gardner, Timothy J

    2013-01-01

    Bird songs range in form from the simple notes of a Chipping Sparrow to the rich performance of the nightingale. Non-adjacent correlations can be found in the syntax of some birdsongs, indicating that the choice of what to sing next is determined not only by the current syllable, but also by previous syllables sung. Here we examine the song of the domesticated canary, a complex singer whose song consists of syllables, grouped into phrases that are arranged in flexible sequences. Phrases are defined by a fundamental time-scale that is independent of the underlying syllable duration. We show that the ordering of phrases is governed by long-range rules: the choice of what phrase to sing next in a given context depends on the history of the song, and for some syllables, highly specific rules produce correlations in song over timescales of up to ten seconds. The neural basis of these long-range correlations may provide insight into how complex behaviors are assembled from more elementary, stereotyped modules.

  17. AstroCappella: Songs of the Universe

    Science.gov (United States)

    Boyd, P. T.; Smale, A. P.; Smale, K. M.

    2008-11-01

    The AstroCappella Project is a classroom-ready collection of upbeat pop songs, lesson plans, and background information, all rich in science content. It was developed as a collaboration between working research astronomers, educators, and a contemporary vocal band, The Chromatics. A multimedia music CD, ``AstroCappella 2.0,'' has been produced containing 13 astronomically correct songs with original lyrics and music. Song topics range from the Sun, Moon, planets and small bodies of the Solar System, through the Doppler shift, the nearest stars, and extra-solar planets, to radio and X-ray astronomy. The CD also contains extensive CD-ROM materials including science background information, curriculum notes, lesson plans and activities for each song, images, movies, and slide shows. The songs and accompanying information have been extensively field-tested, and align to the K--12 National Science Education Standards. The AstroCappella materials are in widespread use in classrooms and homes across the U.S., and are supplemented with frequent live performances and teacher workshops.

  18. Degradation of song in a species using nesting holes: the Pied Flycatcher Ficedula hypoleuca

    Directory of Open Access Journals (Sweden)

    Helene M. Lampe

    2004-06-01

    Full Text Available The habitat, but also the nest hole of a hole-nesting species, will degrade the song during transmission. We investigated how the sounds degrade in a sound transmission experiment with the song of the Pied Flycatcher Ficedula hypoleuca (Muscicapidae. Ten different song elements were transmitted to microphones placed inside and outside a nest box. On average, song degradation was much greater inside than outside the nest boxes, especially with respect to excess attenuation and blurring of the song elements. Being inside a nest box therefore strongly reduces a Pied Flycatcher's possibility of detecting and recognizing songs or eavesdropping on singing interactions.O habitat, mas também a cavidade do ninho de uma espécie nidificando em ocos, provoca uma degradação do som durante sua transmissão. Pesquisamos como os sons são degradados num experimento de transmissão sonora usando o canto do pássaro Ficedula hypoleuca (Muscicapidae. Dez elementos diferentes do canto foram enviados para microfones colocados dentro e fora de uma caixa de nidificação. Em média, a degradação do canto foi muito maior dentro do que fora do ninho, particularmente no que diz respeito ao excesso de atenuação e à borrada dos elementos do canto. Estar dentro de uma cavidade de nidificação, portanto, reduz fortemente a capacidade da espécie de detectar e reconhecer cantos ou de interceptar interações vocais.

  19. Predicting Variation of Folk Songs: A Corpus Analysis Study on the Memorability of Melodies

    Directory of Open Access Journals (Sweden)

    Berit Janssen

    2017-04-01

    Full Text Available We present a hypothesis-driven study on the variation of melody phrases in a collection of Dutch folk songs. We investigate the variation of phrases within the folk songs through a pattern matching method which detects occurrences of these phrases within folk song variants, and ask the question: do the phrases which show less variation have different properties than those which do? We hypothesize that theories on melody recall may predict variation, and as such, investigate phrase length, the position and number of repetitions of a given phrase in the melody in which it occurs, as well as expectancy and motif repetivity. We show that all of these predictors account for the observed variation to a moderate degree, and that, as hypothesized, those phrases vary less which are rather short, contain highly expected melodic material, occur relatively early in the melody, and contain small pitch intervals. A large portion of the variance is left unexplained by the current model, however, which leads us to a discussion of future approaches to study memorability of melodies.

  20. The Strange Use of דגל in Song of Songs 5:10

    OpenAIRE

    Andruska, Jennifer

    2017-01-01

    The use of the word דגל in the Song of Songs 5:10 has caused considerable confusion among commentators. Most occurrences of the word in the Song are thought to be related to an army or host carrying banners, except in 5:10, where this usage is said to make little sense. Scholars therefore interpret the woman’s use of דגל in 5:10 differently from when the man uses it to describe her awe-striking an unnerving appearance in 6:4 and 6:10. This has given some the impression that the lovers view ea...

  1. TEACHING ENGLISH TO YOUNG LEARNERS THROUGH SONGS

    Directory of Open Access Journals (Sweden)

    Yuliana Yuliana

    2003-01-01

    Full Text Available Teaching English to Young Learners has become a trend nowadays. In every school, English is taught as one of the main subjects. In teaching young learners is not like teaching adults, children have their own way of learning. Since children like to play and have fun, the learning and teaching process should be suited with the nature of the children themselves. One of the forms of fun activities for children is through music, and songs are the common form of music that children know. Through this paper, the writer wants to show that through songs, children could enhance their language skills, such as speaking, listening and writing.

  2. 92 A Literary Discourse of Nigerian Children's Accretive Songs (Pp ...

    African Journals Online (AJOL)

    Nekky Umera

    Observation in the past ten years or so shows that some systematic studies of the lore as a ... The importance of these kind of songs is the “training of the participants to ... more.... This game song is usually performed with the view to establishing the most ... context; the literary impact of the song and the predicament of the.

  3. POWRS: position-sensitive motif discovery.

    Directory of Open Access Journals (Sweden)

    Ian W Davis

    Full Text Available Transcription factors and the short, often degenerate DNA sequences they recognize are central regulators of gene expression, but their regulatory code is challenging to dissect experimentally. Thus, computational approaches have long been used to identify putative regulatory elements from the patterns in promoter sequences. Here we present a new algorithm "POWRS" (POsition-sensitive WoRd Set for identifying regulatory sequence motifs, specifically developed to address two common shortcomings of existing algorithms. First, POWRS uses the position-specific enrichment of regulatory elements near transcription start sites to significantly increase sensitivity, while providing new information about the preferred localization of those elements. Second, POWRS forgoes position weight matrices for a discrete motif representation that appears more resistant to over-generalization. We apply this algorithm to discover sequences related to constitutive, high-level gene expression in the model plant Arabidopsis thaliana, and then experimentally validate the importance of those elements by systematically mutating two endogenous promoters and measuring the effect on gene expression levels. This provides a foundation for future efforts to rationally engineer gene expression in plants, a problem of great importance in developing biotech crop varieties.BSD-licensed Python code at http://grassrootsbio.com/papers/powrs/.

  4. Song tutoring in presinging zebra finch juveniles biases a small population of higher-order song-selective neurons toward the tutor song.

    Science.gov (United States)

    Adret, Patrice; Meliza, C Daniel; Margoliash, Daniel

    2012-10-01

    We explored physiological changes correlated with song tutoring by recording the responses of caudal nidopallium neurons of zebra finches aged P21-P24 (days post hatching) to a broad spectrum of natural and synthetic stimuli. Those birds raised with their fathers tended to show behavioral evidence of song memorization but not of singing; thus auditory responses were not confounded by the birds' own vocalizations. In study 1, 37 of 158 neurons (23%) in 17 of 22 tutored and untutored birds were selective for only 1 of 10 stimuli comprising broadband signals, early juvenile songs and calls, female calls, and adult songs. Approximately 30% of the selective neurons (12/37 neurons in 9 birds) were selective for adult conspecific songs. All these were found in the song system nuclei HVC and paraHVC. Of 122 neurons (17 birds) in tutored birds, all of the conspecific song-selective neurons (8 neurons in 6 birds) were selective for the adult tutor song; none was selective for unfamiliar song. In study 2 with a different sampling strategy, we found that 11 of 12 song-selective neurons in 6 of 7 birds preferred the tutor song; none preferred unfamiliar or familiar conspecific songs. Most of these neurons were found in caudal lateral nidopallium (NCL) below HVC. Thus by the time a bird begins to sing, there are small numbers of tutor song-selective neurons distributed in several forebrain regions. We hypothesize that a small population of higher-order auditory neurons is innately selective for complex features of behaviorally relevant stimuli and these responses are modified by specific perceptual/social experience during development.

  5. Karyological characterization and identification of four repetitive element groups (the 18S – 28S rRNA gene, telomeric sequences, microsatellite repeat motifs, Rex retroelements) of the Asian swamp eel (Monopterus albus)

    Science.gov (United States)

    Suntronpong, Aorarat; Thapana, Watcharaporn; Twilprawat, Panupon; Prakhongcheep, Ornjira; Somyong, Suthasinee; Muangmai, Narongrit; Surin Peyachoknagul; Srikulnath, Kornsorn

    2017-01-01

    Abstract Among teleost fishes, Asian swamp eel (Monopterus albus Zuiew, 1793) possesses the lowest chromosome number, 2n = 24. To characterize the chromosome constitution and investigate the genome organization of repetitive sequences in M. albus, karyotyping and chromosome mapping were performed with the 18S – 28S rRNA gene, telomeric repeats, microsatellite repeat motifs, and Rex retroelements. The 18S – 28S rRNA genes were observed to the pericentromeric region of chromosome 4 at the same position with large propidium iodide and C-positive bands, suggesting that the molecular structure of the pericentromeric regions of chromosome 4 has evolved in a concerted manner with amplification of the 18S – 28S rRNA genes. (TTAGGG)n sequences were found at the telomeric ends of all chromosomes. Eight of 19 microsatellite repeat motifs were dispersedly mapped on different chromosomes suggesting the independent amplification of microsatellite repeat motifs in M. albus. Monopterus albus Rex1 (MALRex1) was observed at interstitial sites of all chromosomes and in the pericentromeric regions of most chromosomes whereas MALRex3 was scattered and localized to all chromosomes and MALRex6 to several chromosomes. This suggests that these retroelements were independently amplified or lost in M. albus. Among MALRexs (MALRex1, MALRex3, and MALRex6), MALRex6 showed higher interspecific sequence divergences from other teleost species in comparison. This suggests that the divergence of Rex6 sequences of M. albus might have occurred a relatively long time ago. PMID:29093797

  6. Deck Yourself with Flu Protection Song

    Centers for Disease Control (CDC) Podcasts

    2009-12-22

    This song (sung to the tune of Deck the Halls) describes actions you can take to protect yourself and others from the flu. Sing along!  Created: 12/22/2009 by National Center for Preparedness, Detection, and Control of Infectious Diseases (NCPDCID), Division of Global Migration and Quarantine (DGMQ).   Date Released: 12/22/2009.

  7. Humpback whale, Megaptera novaeangliae, song during the ...

    African Journals Online (AJOL)

    Colombia Foundation to educate the communities of the Gulf of. Tribugá about the ... humpback whales (Winn and Winn 1978). Humpback whale song. ARTICLE .... mental (e.g., wind, waves) or anthropogenic (e.g., water craft) fea- tures, as well ..... rine Sanctuary, Division of Aquatic Resources, Department of Land and Na-.

  8. The 12 Ways to Health Holiday Song

    Centers for Disease Control (CDC) Podcasts

    2007-12-14

    This song (sung to the tune of The Twelve Days of Christmas) describes how to stay safe and healthy during the holidays and all year long.  Created: 12/14/2007 by CDC Office of Women's Health.   Date Released: 12/23/2007.

  9. Music Activities for "Little Wolf's Song"

    Science.gov (United States)

    Cardany, Audrey Berger

    2015-01-01

    Drawn from Britta Techentrup's children's book "Little Wolf's Song", the author shares music activities appropriate for preschool and children in primary grades. Children will enjoy Technentrup's tender family story, while exploring vocal and instrumental timbres, as well as reading, writing, and creating with melodic contour.

  10. Northern Song Reflections on the Tang

    Science.gov (United States)

    Rice, Jeffrey

    2013-01-01

    In the mid-eleventh century Chinese intellectuals argued about history, and left their competing narratives to us in print. They contested how history should be written, and what relevant lessons ought to be adapted to the changing society of Song (960-1279) dynasty China. They were particularly concerned with the history of the long-lasting Tang…

  11. Work Songs, Hegemony, and Illusions of Self.

    Science.gov (United States)

    Conrad, Charles

    1988-01-01

    Suggests a complex dialectical relationship among (1) the meanings that acculturation encourages workers to attribute to their everyday experiences; (2) the meanings enacted in country music work songs; and (3) the support of hierarchical social and organizational power relationships in workers' identities. (MS)

  12. The Equivalence of Translated Songs Lyrics and their Effects - The Case of Translated Ecclesial Songs

    Directory of Open Access Journals (Sweden)

    S. Suharto

    2015-01-01

    Full Text Available This study aimed at describing the equivalence of eclessial song lyrics, which belong to the content word, the meaning of the sentences and their effect on church songs. The method used in this study is descriptive and qualitative by using music, language, and interdiciline approach. The data collection method used questionnaires technique, interview, documents and content analysis. The data used are 5 documents of songs chosen purposively as the primary data. Based on the data being analyzed, the results of this study were: 1 The translated content word located in the same bars and equivalent was around 27.07%, the translated content word located in the same bars, but not equivalent was 18.34%, the translated content word located in the different bars, but equivalent was 11.79%, the translated content word located in the different bars and not equivalent was 2.62%, and the untranslated words were 4.17%. 2 The translation of equivalence beautiful lyrics showed the beauty of the song was equivalent at 17.02%, the beauty of the song was less equivalent at 29.78%, the beauty of the song was not equivalent of 61.70%. 3. The differences of structure caused the incorrect dictions or choice of words and missing words in the translated lyrics.

  13. MotifMark: Finding regulatory motifs in DNA sequences.

    Science.gov (United States)

    Hassanzadeh, Hamid Reza; Kolhe, Pushkar; Isbell, Charles L; Wang, May D

    2017-07-01

    The interaction between proteins and DNA is a key driving force in a significant number of biological processes such as transcriptional regulation, repair, recombination, splicing, and DNA modification. The identification of DNA-binding sites and the specificity of target proteins in binding to these regions are two important steps in understanding the mechanisms of these biological activities. A number of high-throughput technologies have recently emerged that try to quantify the affinity between proteins and DNA motifs. Despite their success, these technologies have their own limitations and fall short in precise characterization of motifs, and as a result, require further downstream analysis to extract useful and interpretable information from a haystack of noisy and inaccurate data. Here we propose MotifMark, a new algorithm based on graph theory and machine learning, that can find binding sites on candidate probes and rank their specificity in regard to the underlying transcription factor. We developed a pipeline to analyze experimental data derived from compact universal protein binding microarrays and benchmarked it against two of the most accurate motif search methods. Our results indicate that MotifMark can be a viable alternative technique for prediction of motif from protein binding microarrays and possibly other related high-throughput techniques.

  14. Annotating RNA motifs in sequences and alignments.

    Science.gov (United States)

    Gardner, Paul P; Eldai, Hisham

    2015-01-01

    RNA performs a diverse array of important functions across all cellular life. These functions include important roles in translation, building translational machinery and maturing messenger RNA. More recent discoveries include the miRNAs and bacterial sRNAs that regulate gene expression, the thermosensors, riboswitches and other cis-regulatory elements that help prokaryotes sense their environment and eukaryotic piRNAs that suppress transposition. However, there can be a long period between the initial discovery of a RNA and determining its function. We present a bioinformatic approach to characterize RNA motifs, which are critical components of many RNA structure-function relationships. These motifs can, in some instances, provide researchers with functional hypotheses for uncharacterized RNAs. Moreover, we introduce a new profile-based database of RNA motifs--RMfam--and illustrate some applications for investigating the evolution and functional characterization of RNA. All the data and scripts associated with this work are available from: https://github.com/ppgardne/RMfam. © The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research.

  15. Degradation of Rural and Urban Great Tit Song

    DEFF Research Database (Denmark)

    Mockford, Emily J; Marshall, Rupert C; Dabelsteen, Torben

    2011-01-01

    Acoustic signals play a fundamental role in avian territory defence and mate attraction. Several studies have now shown that spectral properties of bird song differ between urban and rural environments. Previously this has been attributed to competition for acoustic space as a result of low......-frequency noise present in cities. However, the physical structure of urban areas may have a contributory effect. Here we investigate the sound degradation properties of woodland and city environments using both urban and rural great tit song. We show that although urban surroundings caused significantly less...... degradation to both songs, the transmission efficiency of rural song compared to urban song was significantly lower in the city. While differences between the two songs in woodland were generally minimal, some measures of the transmission efficiency of rural song were significantly lower than those of urban...

  16. Nursing problem-based learning activity: song writing and singing.

    Science.gov (United States)

    Chan, Zenobia C Y

    2014-08-01

    The function of song is not only to deliver individual's messages, but also to serve as a learning approach to facilitate students' learning. To observe the effectiveness of songs in facilitating students' learning, a Problem-based Learning (PBL) class with twenty students was divided into four groups with five students per group. Each group was asked to write a song based on two given scenarios, to sing the song out loud, and to participate in a follow-up focus group interview afterwards. The four songs reflected the students' understanding of academic knowledge and their perspectives toward the protagonists in the presented scenarios. Two songs are presented in this paper to demonstrate how the approach was carried out in the nursing PBL class. This paper aims to show the implication of song writing and singing in PBL and shed some light on teaching and learning. Copyright © 2014 Elsevier Ltd. All rights reserved.

  17. Hunting Motifs in Situla Art

    Directory of Open Access Journals (Sweden)

    Andrej Preložnik

    2013-07-01

    Full Text Available Situla art developed as an echo of the toreutic style which had spread from the Near East through the Phoenicians, Greeks and Etruscans as far as the Veneti, Raeti, Histri, and their eastern neighbours in the region of Dolenjska (Lower Carniola. An Early Iron Age phenomenon (c. 600—300 BC, it rep- resents the major and most arresting form of the contemporary visual arts in an area stretching from the foot of the Apennines in the south to the Drava and Sava rivers in the east. Indeed, individual pieces have found their way across the Alpine passes and all the way north to the Danube. In the world and art of the situlae, a prominent role is accorded to ani- mals. They are displayed in numerous representations of human activities on artefacts crafted in the classic situla style – that is, between the late 6th  and early 5th centuries BC – as passive participants (e.g. in pageants or in harness or as an active element of the situla narrative. The most typical example of the latter is the hunting scene. Today we know at least four objects decorat- ed exclusively with hunting themes, and a number of situlae and other larger vessels where hunting scenes are embedded in composite narratives. All this suggests a popularity unparallelled by any other genre. Clearly recognisable are various hunting techniques and weapons, each associated with a particu- lar type of game (Fig. 1. The chase of a stag with javelin, horse and hound is depicted on the long- familiar and repeatedly published fibula of Zagorje (Fig. 2. It displays a hound mauling the stag’s back and a hunter on horseback pursuing a hind, her neck already pierced by the javelin. To judge by the (so far unnoticed shaft end un- der the stag’s muzzle, the hunter would have been brandishing a second jave- lin as well, like the warrior of the Vače fibula or the rider of the Nesactium situla, presumably himself a hunter. Many parallels to his motif are known from Greece, Etruria, and

  18. BEAM web server: a tool for structural RNA motif discovery.

    Science.gov (United States)

    Pietrosanto, Marco; Adinolfi, Marta; Casula, Riccardo; Ausiello, Gabriele; Ferrè, Fabrizio; Helmer-Citterich, Manuela

    2018-03-15

    RNA structural motif finding is a relevant problem that becomes computationally hard when working on high-throughput data (e.g. eCLIP, PAR-CLIP), often represented by thousands of RNA molecules. Currently, the BEAM server is the only web tool capable to handle tens of thousands of RNA in input with a motif discovery procedure that is only limited by the current secondary structure prediction accuracies. The recently developed method BEAM (BEAr Motifs finder) can analyze tens of thousands of RNA molecules and identify RNA secondary structure motifs associated to a measure of their statistical significance. BEAM is extremely fast thanks to the BEAR encoding that transforms each RNA secondary structure in a string of characters. BEAM also exploits the evolutionary knowledge contained in a substitution matrix of secondary structure elements, extracted from the RFAM database of families of homologous RNAs. The BEAM web server has been designed to streamline data pre-processing by automatically handling folding and encoding of RNA sequences, giving users a choice for the preferred folding program. The server provides an intuitive and informative results page with the list of secondary structure motifs identified, the logo of each motif, its significance, graphic representation and information about its position in the RNA molecules sharing it. The web server is freely available at http://beam.uniroma2.it/ and it is implemented in NodeJS and Python with all major browsers supported. marco.pietrosanto@uniroma2.it. Supplementary data are available at Bioinformatics online.

  19. Line scanning analysis of Dilingtou Yue porcelain in Southern Song Dynasty by SRXRF method

    International Nuclear Information System (INIS)

    Zhu Shoumei; Mao Zhenwei; Feng Min; Zhu Jian; Ling Xue; Sheng Yueming; Huang Yuying; He Wei

    2004-01-01

    The SRXRF line scanning analysis technique was used to measure the elements' content in the Dilingtou Yue porcelain sherd of Southern Song Dynasty from glaze to body. It is found that there exists a middle layer between the porcelain glaze and body. And a line scanning analysis comparison was made with the Ru porcelain in Northern Song Dynasty. There are some differences between them and the middle layer of Dilingtou Yue sherd is a little thinner than the Ru sherd's. And elements' content distributions in glaze are different from Ru porcelain's and the changes of contents from the surface to the inner side of glaze are undulatory. The results indicate that the differences may result from the different materials of body and the different kilns. (authors)

  20. Religious Values In Song Lyrics Tingkilan

    Directory of Open Access Journals (Sweden)

    Muhammad Sadli Mustafa

    2015-06-01

    Full Text Available This globalization era brought people of East Kalimantan tend to prefer modern music and western music. This cause the local or traditional music art is marginalized. On the other hand, they have a local music art containing a lot of local wisdom. One of them is tingkilan music. Lyrics of tingkilan contain religious values. Therefore, this study intends to find and to describe the religious values in the song lyrics of the tingkilan musical arts. This study uses a qualitative research method. The research shows that in fact some tingkilan song lyrics have a deep religious value. Some of those religious values are thanksgiving favors, learning of the holly Qur’an, the way of eating and drinking in accordance with the Islamic teaching.

  1. Niimina Ahubiya: Western Mono Song Genres

    OpenAIRE

    Loether, Christopher

    1993-01-01

    Although Native American communities may lose their ancestral language or other aspects of their traditional culture, music seems to be more resistant to the continual onslaught of the dominant Euro-American culture. Even today, traditional music remains a vital part of Native American communities throughout the United States. In this article I examine one aspect of the musical traditions of the Western Mono, specifically the different types of songs, and their functions within Western Mono s...

  2. The Imprisoned Female in Song of Solomon

    Institute of Scientific and Technical Information of China (English)

    李柳英; 高崇毅

    2008-01-01

    Song of Solomon(1977) is characterized by the growth of the black male.However, the fate of the black women is still highlighted in this book.Ruth is the protagonist's mother, and she is restrained by the social convention and she lives in misery and despair.She is oppressed by racism and sexism, and she is the representative of the imprisoned black women.

  3. Verification of the MOTIF code version 3.0

    International Nuclear Information System (INIS)

    Chan, T.; Guvanasen, V.; Nakka, B.W.; Reid, J.A.K.; Scheier, N.W.; Stanchell, F.W.

    1996-12-01

    As part of the Canadian Nuclear Fuel Waste Management Program (CNFWMP), AECL has developed a three-dimensional finite-element code, MOTIF (Model Of Transport In Fractured/ porous media), for detailed modelling of groundwater flow, heat transport and solute transport in a fractured rock mass. The code solves the transient and steady-state equations of groundwater flow, solute (including one-species radionuclide) transport, and heat transport in variably saturated fractured/porous media. The initial development was completed in 1985 (Guvanasen 1985) and version 3.0 was completed in 1986. This version is documented in detail in Guvanasen and Chan (in preparation). This report describes a series of fourteen verification cases which has been used to test the numerical solution techniques and coding of MOTIF, as well as demonstrate some of the MOTIF analysis capabilities. For each case the MOTIF solution has been compared with a corresponding analytical or independently developed alternate numerical solution. Several of the verification cases were included in Level 1 of the International Hydrologic Code Intercomparison Project (HYDROCOIN). The MOTIF results for these cases were also described in the HYDROCOIN Secretariat's compilation and comparison of results submitted by the various project teams (Swedish Nuclear Power Inspectorate 1988). It is evident from the graphical comparisons presented that the MOTIF solutions for the fourteen verification cases are generally in excellent agreement with known analytical or numerical solutions obtained from independent sources. This series of verification studies has established the ability of the MOTIF finite-element code to accurately model the groundwater flow and solute and heat transport phenomena for which it is intended. (author). 20 refs., 14 tabs., 32 figs

  4. MEMORY SONGS DECREASE DEPRESSION FOR STROKE PATIENTS

    Directory of Open Access Journals (Sweden)

    Harmayetty Harmayetty

    2017-07-01

    Full Text Available Introduction: Biological, physical and phsycosocial changes in stroke patient could be a stressor that induced a depression state. There would be an emotional disturbance in stroke patient and stroke attack would be recurrent, if it was not treated. One of the alternative techniques to reduce depression is musical therapy especially memory songs. Method: This study was used a quasy experimental pre-post test purposive sampling design. The population was stroke patients who treated in Neurological Ward A and Stroke Unit Dr Soetomo Hospital Surabaya. There were 12 respondents divided into 6 respondents for treatment group and 6 respondents for control group. The independent variable was music (memory song and dependent variable was depression. Data were collected by using questionnaire which adapted from Hamilton Depression Rating Scale and Geriatric Depression Rating Scale, then analyzed by using Wilcoxon Signed Rank Test and Mann Whitney U Test with significance level α≤0.05. Result: The result showed that there was a difference between pre test and post test in depression (p=0.0196 and there was a difference in the depression between treatment group and control group (p=0.002. Discussion: It can be concluded that music (memory songs has an effect to the depression of stroke patient. Further studies are needed to concerning other factors that may affect the relaxation technique especially in listening music.

  5. Students’ acceptance of song lyrics containing national characters

    Directory of Open Access Journals (Sweden)

    Dwija Iswara Prana

    2018-01-01

    Full Text Available This paper aims at analyzing the acceptance of elementary school students of song lyrics containing national characters. The study was employed using research and development method, and this paper is the result of the interview related to the learning of nine song lyrics containing national characters. The results showed that all students had no difficulty in learning the vocabulary in the lyrics. However, the students were generally passive when asked about the meaning of the lyrics, hence the ability of students in singing the songs does not represent their understanding of the content of the lyrics. The implication of this research is that students always love songs and can sing songs, but it does not guarantee that students really understand the contents of the song.

  6. Female in-nest chatter song increases predation.

    Science.gov (United States)

    Kleindorfer, Sonia; Evans, Christine; Mahr, Katharina

    2016-01-01

    Female song is an ancestral trait in songbirds, yet extant females generally sing less than males. Here, we examine sex differences in the predation cost of singing behaviour. The superb fairy-wren (Malurus cyaneus) is a Southern Hemisphere songbird; males and females provision the brood and produce solo song year-round. Both sexes had higher song rate during the fertile period and lower song rate during incubation and chick feeding. Females were more likely than males to sing close to or inside the nest. For this reason, female but not male song rate predicted egg and nestling predation. This study identifies a high fitness cost of song when a parent bird attends offspring inside a nest and explains gender differences in singing when there are gender differences in parental care. © 2016 The Author(s).

  7. Can the Song of Songs be described (also as a form of dark green religion?

    Directory of Open Access Journals (Sweden)

    Hendrik Viviers

    2016-03-01

    Full Text Available Bron Taylor defines dark green religion as: �� a deep sense of belonging to and connectedness in nature, whilst perceiving the earth and its living systems to be sacred and interconnected�. It not only emphasises a felt kinship with the rest of life but also evokes awe, wonderment and humility towards nature that binds to something �greater than oneself�. Do the intimate �oneness� and living in the moment of the two young lovers in the Song also extend to a diminishing of the self and an experience of oneness with a greater, timeless, mysterious reality? In order to determine whether the Song of Songs complies with a form of nature spirituality, the notions of belonging, interconnectedness and sacredness were investigated as they appear in this ancient book of love. It was found that the Song is representative of a form of dark green religion of a non-doctrinaire, immanent kind. It exhibits ubiquitously the notions of belonging and connection (kinship with nature, an interconnectedness and interdependency of the web of life and the sacredness of the earth and its inhabitants (their intrinsic worth that evokes awe, wonderment and humility. The experience of sensuality, living mindfully in the moment, transforms into a timeless spirituality of connection to �another, mysterious world�.Intradisciplinary and/or interdisciplinary implications: The relevance of reader-oriented appreciations of biblical texts, notably ecological hermeneutics, is demonstrated; this approach can also be extended to other sacred texts apart from the Bible; furthermore, it points to the need for the ongoing dialogue with the natural sciences.Keywords: dark green religion; nature spirituality; belonging;interconnectedness; sacredness; Song of Songs

  8. Porous Privacy: The Literati Studio and Spatiality in Song China

    OpenAIRE

    Zhang, Yunshuang

    2017-01-01

    My dissertation examines the distinctive significance of the studio during the Song dynasty (960–1279) through its various literary and visual representations. Simply speaking, the studio was an enclosed site specifically used for reading, writing, and art creation. Pre-Song texts have records of a few early examples of studio sites in China. However, it was during the Song dynasty that the studio became a prominent cultural space for literati. The studio became both an object of scholarly re...

  9. Female in-nest chatter song increases predation

    OpenAIRE

    Kleindorfer, Sonia; Evans, Christine; Mahr, Katharina

    2016-01-01

    Female song is an ancestral trait in songbirds, yet extant females generally sing less than males. Here, we examine sex differences in the predation cost of singing behaviour. The superb fairy-wren (Malurus cyaneus) is a Southern Hemisphere songbird; males and females provision the brood and produce solo song year-round. Both sexes had higher song rate during the fertile period and lower song rate during incubation and chick feeding. Females were more likely than males to sing close to or ins...

  10. Context effects on tempo and pleasantness judgments for Beatles songs.

    Science.gov (United States)

    Rashotte, Matthew A; Wedell, Douglas H

    2012-04-01

    Context effects on tempo and pleasantness judgments of different tempos were demonstrated in three experiments using Beatles songs. In Experiments 1 and 2, we explored how listening to versions of the same song that were played at different tempos affected tempo and pleasantness ratings. In both experiments, contrast effects were found on judgments of tempo, with target tempos rated faster when context tempos were slow than when they were fast. In both experiments, we also showed that the peak of the pleasantness rating function shifted toward the values of the context tempos, reflecting disordinal context effects on pleasantness relationships. Familiarity with the songs did not moderate these effects, and shifts in tempo ratings did not correlate with shifts in most pleasant target tempos when context was manipulated within subjects. In Experiment 3, we examined how manipulations of context tempos for one song affected judgments of the same song as compared with judgments of other more or less similar songs. For tempo ratings, contrast effects transferred to ratings of a similar song, but for pleasantness ratings, assimilative shifts of ideals were found only for the same song and not for similar songs. This pattern of results was supportive of independent bases for the two context effects.

  11. European Blackbirds Exposed to Aircraft Noise Advance Their Chorus, Modify Their Song and Spend More Time Singing

    Directory of Open Access Journals (Sweden)

    Javier Sierro

    2017-06-01

    Full Text Available Noise pollution has a strong impact on wildlife by disrupting vocal communication or inducing physiological stress. Songbirds are particularly reliant on vocal communication as they use song during territorial and sexual interactions. Birds living in noisy environments have been shown to change the acoustic and temporal parameters of their song presumably to maximize signal transmissibility. Also, research shows that birds advance their dawn chorus in urban environments to avoid the noisiest hours, but little is known on the consequences of these changes in the time they spent singing at dawn. Here we present a comprehensive view of the European blackbird singing behavior living next to a large airport in Madrid, using as a control a population living in a similar but silent forest. Blackbird song is composed of two parts: a series of loud low-frequency whistles (motif and a final flourish (twitter. We found that airport blackbirds were more likely to sing songs without the twitter part. Also, when songs included a twitter part, airport blackbirds used a smaller proportion of song for the twitter than control blackbirds. Interestingly, our results show no differences in song frequency between airport and control populations. However airport blackbirds not only sang earlier but also increased the time they spent singing when chorus and aircraft traffic overlapped on time. This effect disappeared as the season progressed and the chorus and the aircraft traffic schedule were separated on time. We propose that the typical urban upshift in frequency might not be useful under the noise conditions and landscape structure found near airports. We suggest that the modifications in singing behavior induced by aircraft noise may be adaptive and that they are specific to airport acoustic habitat. Moreover, we found that adjustment of singing activity in relation to noise is plastic and possibly optimized to cope with aircraft traffic activity. In a

  12. Motif signatures of transcribed enhancers

    KAUST Repository

    Kleftogiannis, Dimitrios

    2017-09-14

    In mammalian cells, transcribed enhancers (TrEn) play important roles in the initiation of gene expression and maintenance of gene expression levels in spatiotemporal manner. One of the most challenging questions in biology today is how the genomic characteristics of enhancers relate to enhancer activities. This is particularly critical, as several recent studies have linked enhancer sequence motifs to specific functional roles. To date, only a limited number of enhancer sequence characteristics have been investigated, leaving space for exploring the enhancers genomic code in a more systematic way. To address this problem, we developed a novel computational method, TELS, aimed at identifying predictive cell type/tissue specific motif signatures. We used TELS to compile a comprehensive catalog of motif signatures for all known TrEn identified by the FANTOM5 consortium across 112 human primary cells and tissues. Our results confirm that distinct cell type/tissue specific motif signatures characterize TrEn. These signatures allow discriminating successfully a) TrEn from random controls, proxy of non-enhancer activity, and b) cell type/tissue specific TrEn from enhancers expressed and transcribed in different cell types/tissues. TELS codes and datasets are publicly available at http://www.cbrc.kaust.edu.sa/TELS.

  13. Mechanisms of zero-lag synchronization in cortical motifs.

    Directory of Open Access Journals (Sweden)

    Leonardo L Gollo

    2014-04-01

    Full Text Available Zero-lag synchronization between distant cortical areas has been observed in a diversity of experimental data sets and between many different regions of the brain. Several computational mechanisms have been proposed to account for such isochronous synchronization in the presence of long conduction delays: Of these, the phenomenon of "dynamical relaying"--a mechanism that relies on a specific network motif--has proven to be the most robust with respect to parameter mismatch and system noise. Surprisingly, despite a contrary belief in the community, the common driving motif is an unreliable means of establishing zero-lag synchrony. Although dynamical relaying has been validated in empirical and computational studies, the deeper dynamical mechanisms and comparison to dynamics on other motifs is lacking. By systematically comparing synchronization on a variety of small motifs, we establish that the presence of a single reciprocally connected pair--a "resonance pair"--plays a crucial role in disambiguating those motifs that foster zero-lag synchrony in the presence of conduction delays (such as dynamical relaying from those that do not (such as the common driving triad. Remarkably, minor structural changes to the common driving motif that incorporate a reciprocal pair recover robust zero-lag synchrony. The findings are observed in computational models of spiking neurons, populations of spiking neurons and neural mass models, and arise whether the oscillatory systems are periodic, chaotic, noise-free or driven by stochastic inputs. The influence of the resonance pair is also robust to parameter mismatch and asymmetrical time delays amongst the elements of the motif. We call this manner of facilitating zero-lag synchrony resonance-induced synchronization, outline the conditions for its occurrence, and propose that it may be a general mechanism to promote zero-lag synchrony in the brain.

  14. Assessing local structure motifs using order parameters for motif recognition, interstitial identification, and diffusion path characterization

    Science.gov (United States)

    Zimmermann, Nils E. R.; Horton, Matthew K.; Jain, Anubhav; Haranczyk, Maciej

    2017-11-01

    Structure-property relationships form the basis of many design rules in materials science, including synthesizability and long-term stability of catalysts, control of electrical and optoelectronic behavior in semiconductors as well as the capacity of and transport properties in cathode materials for rechargeable batteries. The immediate atomic environments (i.e., the first coordination shells) of a few atomic sites are often a key factor in achieving a desired property. Some of the most frequently encountered coordination patterns are tetrahedra, octahedra, body and face-centered cubic as well as hexagonal closed packed-like environments. Here, we showcase the usefulness of local order parameters to identify these basic structural motifs in inorganic solid materials by developing classification criteria. We introduce a systematic testing framework, the Einstein crystal test rig, that probes the response of order parameters to distortions in perfect motifs to validate our approach. Subsequently, we highlight three important application cases. First, we map basic crystal structure information of a large materials database in an intuitive manner by screening the Materials Project (MP) database (61,422 compounds) for element-specific motif distributions. Second, we use the structure-motif recognition capabilities to automatically find interstitials in metals, semiconductor, and insulator materials. Our Interstitialcy Finding Tool (InFiT) facilitates high-throughput screenings of defect properties. Third, the order parameters are reliable and compact quantitative structure descriptors for characterizing diffusion hops of intercalants as our example of magnesium in MnO2-spinel indicates. Finally, the tools developed in our work are readily and freely available as software implementations in the pymatgen library, and we expect them to be further applied to machine-learning approaches for emerging applications in materials science.

  15. Assessing Local Structure Motifs Using Order Parameters for Motif Recognition, Interstitial Identification, and Diffusion Path Characterization

    Directory of Open Access Journals (Sweden)

    Nils E. R. Zimmermann

    2017-11-01

    Full Text Available Structure–property relationships form the basis of many design rules in materials science, including synthesizability and long-term stability of catalysts, control of electrical and optoelectronic behavior in semiconductors, as well as the capacity of and transport properties in cathode materials for rechargeable batteries. The immediate atomic environments (i.e., the first coordination shells of a few atomic sites are often a key factor in achieving a desired property. Some of the most frequently encountered coordination patterns are tetrahedra, octahedra, body and face-centered cubic as well as hexagonal close packed-like environments. Here, we showcase the usefulness of local order parameters to identify these basic structural motifs in inorganic solid materials by developing classification criteria. We introduce a systematic testing framework, the Einstein crystal test rig, that probes the response of order parameters to distortions in perfect motifs to validate our approach. Subsequently, we highlight three important application cases. First, we map basic crystal structure information of a large materials database in an intuitive manner by screening the Materials Project (MP database (61,422 compounds for element-specific motif distributions. Second, we use the structure-motif recognition capabilities to automatically find interstitials in metals, semiconductor, and insulator materials. Our Interstitialcy Finding Tool (InFiT facilitates high-throughput screenings of defect properties. Third, the order parameters are reliable and compact quantitative structure descriptors for characterizing diffusion hops of intercalants as our example of magnesium in MnO2-spinel indicates. Finally, the tools developed in our work are readily and freely available as software implementations in the pymatgen library, and we expect them to be further applied to machine-learning approaches for emerging applications in materials science.

  16. The Prison Songs of Lili'uokalani

    OpenAIRE

    Morris, Cynthia L.

    2013-01-01

    This thesis is a study of the music composed by Lili'uokalani, the last monarch of Hawai'i during her 1895 incarceration at the hands of the Republic of Hawai'i. Aspects of text and context are considered for each of the songs. This thesis also engages in a discussion of the alleged politicization of a copy of "Aloha Oe," notated by the Queen during the incarceration. My research consisted of visits to the Hawai'i State Archives and the Bishop Museum Archives in Honolulu. I enlisted the help ...

  17. Unity and Difference in Andean Songs

    Directory of Open Access Journals (Sweden)

    Charles Maurice Pigott

    2013-03-01

    Full Text Available This essay explores the concepts of “unity” and “difference” in Andean songs. The verses pertain to the Masha ritual enacted annually in Mangas, central Peru, and combine Quechua (the indigenous language with Spanish. Through detailed exegesis of the texts, this essay argues that, far from being irreconcilable, “unity” and “difference” are best understood as mutually informing since the recognition of difference opens up the parameters of potential exchange. This optic is informed by a worldview that emphasizes “relation” over “entities.”

  18. Teaching English to Young Learners Through Songs

    OpenAIRE

    Yuliana, Yuliana

    2003-01-01

    Teaching English to Young Learners has become a trend nowadays. In every school, English is taught as one of the main subjects. In teaching young learners is not like teaching adults, children have their own way of learning. Since children like to play and have fun, the learning and teaching process should be suited with the nature of the children themselves. One of the forms of fun activities for children is through music, and songs are the common form of music that children know. Through th...

  19. Folklore and Folk Songs of Chittagong: A Critical Review

    Directory of Open Access Journals (Sweden)

    Amir Mohammad Khan

    2017-04-01

    Full Text Available Folk Songs stems from Folklore are very rich in the southern region of Chittagong. In this part of the world Folk Songs play pivotal role in the lifestyle of people as a heart-touching and heavenly connection exists between human, nature and Folk Songs. Folk Songs in this area are special because we found the theme of Nature Conservation in them. We took the southern part of Chittagong (Lohagara, Satkania, Chandanaish and Patiya as our research area, selected a village namely Chunati in the systematic sampling and more than 100 people were interviewed through focus group discussion and key informant interviews. The sufficient literature review is also done. People in this area love nature a lot. Here music personnel were born from time to time who not only worked for the musical development but also created consciousness among people to love nature and save it. We discussed about the origin of Folk Songs, pattern of Folk Songs to clarify the importance of Folk Songs of Chittagong for its connection to Folklore and at the same time for promoting the idea of Nature Conservation. Of course, this part of studies deserves more attention in the field of research. Our ultimate goal should be to conserve and promote Folk Songs of Chittagong with yearlong heritage that automatically will later enrich Folklore and Nature Conservation.

  20. Discursive Features of Selected Political Song Texts of the 2011 ...

    African Journals Online (AJOL)

    Political rallies are an integral component of political cultures in most participatory democracies. The political rally as a genre of political discourse is characterised by different signifying practices among which are talks, songs, costume and surrogate language. This study isolates songs as a system of signification in political ...

  1. The communicative functions of post-2000 Shona popular songs: A ...

    African Journals Online (AJOL)

    This article proposes a typology of Shona popular songs employing a systemic functional linguistics (SFL) informed genre theory, which distinguishes texts on the ... Although some studies have been carried out on these songs in the context of popular music, none have attempted a linguistically-grounded analysis of the ...

  2. The Complete Book of Rhymes, Songs, Poems, Fingerplays, and Chants.

    Science.gov (United States)

    Silberg, Jackie; Schiller, Pam

    Aside from being fun to do, singing songs, saying poems and rhymes, and doing finger plays with children helps them develop early literacy skills. The 700 selections in this compilation of songs and rhymes will help children ages 3 to 6 build a strong foundation in skills and concepts such as listening; colors, shapes, and counting; vocabulary;…

  3. Acoustic Communication in Birds-Differences in Songs and Calls ...

    Indian Academy of Sciences (India)

    Songs, calls and visual displays of the Oriental magpie robin have been studied in detail. In northern India, this species breeds between May and August raising several broods. During this period, males sing complex and melodious songs in their respective territories for the advertisement of territories and mate acquisition.

  4. Own song selectivity in the songbird auditory pathway

    DEFF Research Database (Denmark)

    Poirier, Colline; Boumans, Tiny; Vellema, Michiel

    2011-01-01

    BACKGROUND: Like human speech, birdsong is a learned behavior that supports species and individual recognition. Norepinephrine is a catecholamine suspected to play a role in song learning. The goal of this study was to investigate the role of norepinephrine in bird's own song selectivity, a prope...

  5. How the songbird brain listens to its own songs

    Science.gov (United States)

    Hahnloser, Richard

    2010-03-01

    Songbirds are capable of vocal learning and communication and are ideally suited to the study of neural mechanisms of auditory feedback processing. When a songbird is deafened in the early sensorimotor phase after tutoring, it fails to imitate the song of its tutor and develops a highly aberrant song. It is also known that birds are capable of storing a long-term memory of tutor song and that they need intact auditory feedback to match their own vocalizations to the tutor's song. Based on these behavioral observations, we investigate feedback processing in single auditory forebrain neurons of juvenile zebra finches that are in a late developmental stage of song learning. We implant birds with miniature motorized microdrives that allow us to record the electrical activity of single neurons while birds are freely moving and singing in their cages. Occasionally, we deliver a brief sound through a loudspeaker to perturb the auditory feedback the bird experiences during singing. These acoustic perturbations of auditory feedback reveal complex sensitivity that cannot be predicted from passive playback responses. Some neurons are highly feedback sensitive in that they respond vigorously to song perturbations, but not to unperturbed songs or perturbed playback. These findings suggest that a computational function of forebrain auditory areas may be to detect errors between actual feedback and mirrored feedback deriving from an internal model of the bird's own song or that of its tutor.

  6. Image/Music/Voice: Song Dubbing in Hollywood Musicals.

    Science.gov (United States)

    Siefert, Marsha

    1995-01-01

    Uses the practice of song dubbing in the Hollywood film musical to explore the implications and consequences of the singing voice for imaging practices in the 1930s through 1960s. Discusses the ideological, technological, and socioeconomic basis for song dubbing. Discusses gender, race, and ethnicity patterns of image-sound practices. (SR)

  7. LINGUISTIC AND CULTURAL CHARACTERISTICS OF RUSSIAN AND ENGLISH CHILDREN'S SONGS

    Directory of Open Access Journals (Sweden)

    Ms. Valeria A. Buryakovskaya

    2016-12-01

    Full Text Available Linguistic and cultural specificity of children's songs is determined by the extralinguistic and linguistic characteristics that most clearly are seen in the light of comparative analysis. For a long historical period there was a stream of cultural phenomena from Western Europe to Russia including the UK, which is reflected in the language including children's songs. The purpose of the study is to identify the similarities and differences of children's songs in Russian and English folklore cultures. It is established that the main differences of the Russian song culture from the European one are determined by historical, religious, regional, ethnic, musical, poetic and other traditions. The similarities are observed in the structural, phonetic and genre-themed events. At the same time, Russian and English children's songs differ from each other in their lexical-grammatical and stylistic peculiarities, the set of concepts and characters.

  8. Songs as a Medium for Embedded Reproductive Messages

    Directory of Open Access Journals (Sweden)

    Dawn R. Hobbs

    2011-07-01

    Full Text Available Research shows that sensational news stories as well as popular romance novels often feature themes related to important topics in evolutionary psychology. In the first of four studies described in this paper we examined the song lyrics from three Billboard charts: Country, Pop, and R&B. A content analysis of the lyrics revealed 18 reproductive themes that read like an outline for a course in evolutionary psychology. Approximately 92% of the 174 songs that made it into the Top Ten in 2009 contained one or more reproductive messages, with an average of 10.49 reproductive phrases per song. Although differences in the frequency of different themes between charts were found, further analyses showed that the most popular/bestselling songs contained significantly more reproductive messages. An analysis of the lyrics of opera arias and art songs also revealed evidence for many of the same embedded reproductive messages extending back more than 400 years.

  9. Cross recurrence quantification for cover song identification

    Energy Technology Data Exchange (ETDEWEB)

    Serra, Joan; Serra, Xavier; Andrzejak, Ralph G [Department of Information and Communication Technologies, Universitat Pompeu Fabra, Roc Boronat 138, 08018 Barcelona (Spain)], E-mail: joan.serraj@upf.edu

    2009-09-15

    There is growing evidence that nonlinear time series analysis techniques can be used to successfully characterize, classify, or process signals derived from real-world dynamics even though these are not necessarily deterministic and stationary. In the present study, we proceed in this direction by addressing an important problem our modern society is facing, the automatic classification of digital information. In particular, we address the automatic identification of cover songs, i.e. alternative renditions of a previously recorded musical piece. For this purpose, we here propose a recurrence quantification analysis measure that allows the tracking of potentially curved and disrupted traces in cross recurrence plots (CRPs). We apply this measure to CRPs constructed from the state space representation of musical descriptor time series extracted from the raw audio signal. We show that our method identifies cover songs with a higher accuracy as compared to previously published techniques. Beyond the particular application proposed here, we discuss how our approach can be useful for the characterization of a variety of signals from different scientific disciplines. We study coupled Roessler dynamics with stochastically modulated mean frequencies as one concrete example to illustrate this point.

  10. Memory for frequency of hearing popular songs.

    Science.gov (United States)

    Fidler, J R; Zechmeister, E B; Shaughnessy, J J

    1988-01-01

    In two experiments college students were asked to provide situational frequency estimates of 10-s excerpts from rock songs. In both experiments familiarity of the musical selections heard one, two, three, or four times was varied. In Experiment 2 the nature of instructions given to subjects prior to presentation of the musical excerpts was also manipulated. Across both experiments subjects' estimates were less accurate for unfamiliar than for familiar rock music. In Experiment 2 instructions to remember frequency, as well as general memory instructions, resulted in better memory for presentation frequency than did instructions to "ignore" music while working on math problems. Memory for situational frequency was also related to knowledge of rock music as defined by subjects' ability to identify the titles and artists of the presented songs. The present pattern of results with popular music is viewed as similar to that obtained in experiments investigating memory for frequency of verbal stimuli. Although providing support for an automatic processing view of frequency encoding, the results also implicate meaningful elaboration of stimuli as an important determinant of memory for frequency of events.

  11. FAROESTE CABOCLO: PSYCHOANALYSIS INTERPRETATION OF THE SONG

    Directory of Open Access Journals (Sweden)

    Fabiana Cristina Teixeira

    2017-03-01

    Full Text Available This article aims to integrate the psychoanalytic concepts of discontent, violence, aggressiveness and enemy with the acclaimed song “Faroeste Caboclo”, an important legacy of Brazilian Pop-Rock from the 1980s. The song narrates the saga of João de Santo Cristo, an orphan whose life story was characterized by uneasiness, racial discrimination, and difficulty to deal with authority figures, which turned him into a renowned drug dealer. With an ending marked by passional tragedy, culminating with the death of all the main characters, the plot is traversed by violence, aggressiveness and hate. This demonstrates how the story unfolds to the field of alterity through the emergence of friendship and enmity, allowing a thorough discussion and comprehension of João de Santo Cristo’s story. Assuming that music is both an individual form of expression and a form of apprehension and description of social reality, this study sought to comprehend the psychic dimensions demonstrated in the lyrics, which narrate a story that is very similar to real life stories of many adolescents involved in violent criminality in Brazil. The main objective was to discuss the possible meanings of these lyrics, hence promoting a constructive dialog between psychoanalysis and culture.

  12. Cross recurrence quantification for cover song identification

    International Nuclear Information System (INIS)

    Serra, Joan; Serra, Xavier; Andrzejak, Ralph G

    2009-01-01

    There is growing evidence that nonlinear time series analysis techniques can be used to successfully characterize, classify, or process signals derived from real-world dynamics even though these are not necessarily deterministic and stationary. In the present study, we proceed in this direction by addressing an important problem our modern society is facing, the automatic classification of digital information. In particular, we address the automatic identification of cover songs, i.e. alternative renditions of a previously recorded musical piece. For this purpose, we here propose a recurrence quantification analysis measure that allows the tracking of potentially curved and disrupted traces in cross recurrence plots (CRPs). We apply this measure to CRPs constructed from the state space representation of musical descriptor time series extracted from the raw audio signal. We show that our method identifies cover songs with a higher accuracy as compared to previously published techniques. Beyond the particular application proposed here, we discuss how our approach can be useful for the characterization of a variety of signals from different scientific disciplines. We study coupled Roessler dynamics with stochastically modulated mean frequencies as one concrete example to illustrate this point.

  13. Food for Song: Expression of C-Fos and ZENK in the Zebra Finch Song Nuclei during Food Aversion Learning

    Science.gov (United States)

    Tokarev, Kirill; Tiunova, Anna

    2011-01-01

    Background Specialized neural pathways, the song system, are required for acquiring, producing, and perceiving learned avian vocalizations. Birds that do not learn to produce their vocalizations lack telencephalic song system components. It is not known whether the song system forebrain regions are exclusively evolved for song or whether they also process information not related to song that might reflect their ‘evolutionary history’. Methodology/Principal Findings To address this question we monitored the induction of two immediate-early genes (IEGs) c-Fos and ZENK in various regions of the song system in zebra finches (Taeniopygia guttata) in response to an aversive food learning paradigm; this involves the association of a food item with a noxious stimulus that affects the oropharyngeal-esophageal cavity and tongue, causing subsequent avoidance of that food item. The motor response results in beak and head movements but not vocalizations. IEGs have been extensively used to map neuro-molecular correlates of song motor production and auditory processing. As previously reported, neurons in two pallial vocal motor regions, HVC and RA, expressed IEGs after singing. Surprisingly, c-Fos was induced equivalently also after food aversion learning in the absence of singing. The density of c-Fos positive neurons was significantly higher than that of birds in control conditions. This was not the case in two other pallial song nuclei important for vocal plasticity, LMAN and Area X, although singing did induce IEGs in these structures, as reported previously. Conclusions/Significance Our results are consistent with the possibility that some of the song nuclei may participate in non-vocal learning and the populations of neurons involved in the two tasks show partial overlap. These findings underscore the previously advanced notion that the specialized forebrain pre-motor nuclei controlling song evolved from circuits involved in behaviors related to feeding. PMID:21695176

  14. Kopi dan Kakao dalam Kreasi Motif Batik Khas Jember

    Directory of Open Access Journals (Sweden)

    Irfa'ina Rohana Salma

    2015-06-01

    Full Text Available ABSTRAK Batik Jember selama ini identik dengan motif daun tembakau. Visualisasi daun tembakau dalam motif Batik Jember cukup lemah, yaitu kurang berkarakter karena motif yang muncul adalah seperti gambar daun pada umumnya. Oleh karena itu perlu diciptakan desain motif batik khas Jember yang sumber inspirasinya digali dari kekayaan alam lainnya dari Jember yang mempunyai bentuk spesifik dan karakteristik sehingga identitas motif bisa didapatkan dengan lebih kuat. Hasil alam khas Jember tersebut adalah kopi dan kakao. Tujuan penciptaan seni ini adalah untuk menghasilkan motif batik  baru yang mempunyai ciri khas Jember. Metode yang digunakan yaitu pengumpulan data, pengamatan mendalam terhadap objek penciptaan, pengkajian sumber inspirasi, pembuatan desain motif, dan perwujudan menjadi batik. Dari penciptaan seni ini berhasil dikreasikan 6 (enam motif batik yaitu: (1 Motif Uwoh Kopi; (2 Motif Godong Kopi;  (3 Motif Ceplok Kakao; (4 Motif Kakao Raja; (5 Motif Kakao Biru; dan (6 Motif Wiji Mukti. Berdasarkan hasil penilaian “Selera Estetika” diketahui bahwa motif yang paling banyak disukai adalah Motif Uwoh Kopi dan Motif Kakao Raja. Kata kunci: Motif Woh Kopi, Motif Godong Kopi, Motif Ceplok Kakao, Motif Kakao Raja, Motif Kakao Biru, Motif Wiji Mukti ABSTRACTBatik Jember is synonymous with tobacco leaf motif. Tobacco leaf shape is quite weak in the visual appearance characterized as that motif emerges like a picture of leaves in general. Therefore, it is necessary to create a distinctive design motif extracted from other natural resources of Jember that have specific shapes and characteristics that can be obtained as the stronger motif identity. The typical natural resources from Jember are coffee and cocoa. The purpose of the creation of this art is to produce the unique, creative and innovative batik and have specific characteristics of Jember. The method used are data collection, observation of the object, reviewing inspiration sources

  15. Comparison of semiautomated bird song recognition with manual detection of recorded bird song samples

    OpenAIRE

    Lisa A. Venier; Marc J. Mazerolle; Anna Rodgers; Ken A. McIlwrick; Stephen Holmes; Dean Thompson

    2017-01-01

    Automated recording units are increasingly being used to sample wildlife populations. These devices can produce large amounts of data that are difficult to process manually. However, the information in the recordings can be summarized with semiautomated sound recognition software. Our objective was to assess the utility of the semiautomated bird song recognizers to produce data useful for conservation and sustainable forest management applications. We compared detection data generated from ex...

  16. Use of intelligent loop diagrams at San Onofre Nuclear Generation Station (SONGS)

    International Nuclear Information System (INIS)

    Groves, J.E.; Johnson, K.I.; Foulk, J.; Reinschmidt, K.F.; Tutos, N.C.

    1991-01-01

    The use of advanced information systems will result in five million dollars potential cost reduction and two years less time for producing over 2000 Instrumentation and Control Loop Diagrams for the three nuclear units at San Onofre Nuclear Generating Station (SONGS). This new information technology will also assist plant management at SONGS in generating even larger savings from reduction in operations and maintenance costs. The key element of the new solution is the use of plant drawings, the traditional primary source of plant information, for on-line access to all plant databases and information systems, by replacing paper drawings with intelligent electronic drawings. The implementation of this concept for the Instrumentation and Control Loop Diagrams, presently in progress, is part of the Integrated Nuclear Data Management Systems (INDAMS) program at SONGS, a joint effort which includes support from Stone and Webster Advanced Systems Development Services, International Business Machines Corporation (IBM), and Dassault Systems of France. The initial results have encouraged plant management to speed up the implementation process

  17. Genome size variation affects song attractiveness in grasshoppers: evidence for sexual selection against large genomes.

    Science.gov (United States)

    Schielzeth, Holger; Streitner, Corinna; Lampe, Ulrike; Franzke, Alexandra; Reinhold, Klaus

    2014-12-01

    Genome size is largely uncorrelated to organismal complexity and adaptive scenarios. Genetic drift as well as intragenomic conflict have been put forward to explain this observation. We here study the impact of genome size on sexual attractiveness in the bow-winged grasshopper Chorthippus biguttulus. Grasshoppers show particularly large variation in genome size due to the high prevalence of supernumerary chromosomes that are considered (mildly) selfish, as evidenced by non-Mendelian inheritance and fitness costs if present in high numbers. We ranked male grasshoppers by song characteristics that are known to affect female preferences in this species and scored genome sizes of attractive and unattractive individuals from the extremes of this distribution. We find that attractive singers have significantly smaller genomes, demonstrating that genome size is reflected in male courtship songs and that females prefer songs of males with small genomes. Such a genome size dependent mate preference effectively selects against selfish genetic elements that tend to increase genome size. The data therefore provide a novel example of how sexual selection can reinforce natural selection and can act as an agent in an intragenomic arms race. Furthermore, our findings indicate an underappreciated route of how choosy females could gain indirect benefits. © 2014 The Author(s). Evolution © 2014 The Society for the Study of Evolution.

  18. Core and Shell Song Systems Unique to the Parrot Brain

    Science.gov (United States)

    Chakraborty, Mukta; Walløe, Solveig; Nedergaard, Signe; Fridel, Emma E.; Dabelsteen, Torben; Pakkenberg, Bente; Bertelsen, Mads F.; Dorrestein, Gerry M.; Brauth, Steven E.; Durand, Sarah E.; Jarvis, Erich D.

    2015-01-01

    The ability to imitate complex sounds is rare, and among birds has been found only in parrots, songbirds, and hummingbirds. Parrots exhibit the most advanced vocal mimicry among non-human animals. A few studies have noted differences in connectivity, brain position and shape in the vocal learning systems of parrots relative to songbirds and hummingbirds. However, only one parrot species, the budgerigar, has been examined and no differences in the presence of song system structures were found with other avian vocal learners. Motivated by questions of whether there are important differences in the vocal systems of parrots relative to other vocal learners, we used specialized constitutive gene expression, singing-driven gene expression, and neural connectivity tracing experiments to further characterize the song system of budgerigars and/or other parrots. We found that the parrot brain uniquely contains a song system within a song system. The parrot “core” song system is similar to the song systems of songbirds and hummingbirds, whereas the “shell” song system is unique to parrots. The core with only rudimentary shell regions were found in the New Zealand kea, representing one of the only living species at a basal divergence with all other parrots, implying that parrots evolved vocal learning systems at least 29 million years ago. Relative size differences in the core and shell regions occur among species, which we suggest could be related to species differences in vocal and cognitive abilities. PMID:26107173

  19. Perception of words and pitch patterns in song and speech

    Directory of Open Access Journals (Sweden)

    Julia eMerrill

    2012-03-01

    Full Text Available This fMRI study examines shared and distinct cortical areas involved in the auditory perception of song and speech at the level of their underlying constituents: words, pitch and rhythm. Univariate and multivariate analyses were performed on the brain activity patterns of six conditions, arranged in a subtractive hierarchy: sung sentences including words, pitch and rhythm; hummed speech prosody and song melody containing only pitch patterns and rhythm; as well as the pure musical or speech rhythm.Systematic contrasts between these balanced conditions following their hierarchical organization showed a great overlap between song and speech at all levels in the bilateral temporal lobe, but suggested a differential role of the inferior frontal gyrus (IFG and intraparietal sulcus (IPS in processing song and speech. The left IFG was involved in word- and pitch-related processing in speech, the right IFG in processing pitch in song.Furthermore, the IPS showed sensitivity to discrete pitch relations in song as opposed to the gliding pitch in speech. Finally, the superior temporal gyrus and premotor cortex coded for general differences between words and pitch patterns, irrespective of whether they were sung or spoken. Thus, song and speech share many features which are reflected in a fundamental similarity of brain areas involved in their perception. However, fine-grained acoustic differences on word and pitch level are reflected in the activity of IFG and IPS.

  20. Identification of putative regulatory motifs in the upstream regions of co-expressed functional groups of genes in Plasmodium falciparum

    Directory of Open Access Journals (Sweden)

    Joshi NV

    2009-01-01

    Full Text Available Abstract Background Regulation of gene expression in Plasmodium falciparum (Pf remains poorly understood. While over half the genes are estimated to be regulated at the transcriptional level, few regulatory motifs and transcription regulators have been found. Results The study seeks to identify putative regulatory motifs in the upstream regions of 13 functional groups of genes expressed in the intraerythrocytic developmental cycle of Pf. Three motif-discovery programs were used for the purpose, and motifs were searched for only on the gene coding strand. Four motifs – the 'G-rich', the 'C-rich', the 'TGTG' and the 'CACA' motifs – were identified, and zero to all four of these occur in the 13 sets of upstream regions. The 'CACA motif' was absent in functional groups expressed during the ring to early trophozoite transition. For functional groups expressed in each transition, the motifs tended to be similar. Upstream motifs in some functional groups showed 'positional conservation' by occurring at similar positions relative to the translational start site (TLS; this increases their significance as regulatory motifs. In the ribonucleotide synthesis, mitochondrial, proteasome and organellar translation machinery genes, G-rich, C-rich, CACA and TGTG motifs, respectively, occur with striking positional conservation. In the organellar translation machinery group, G-rich motifs occur close to the TLS. The same motifs were sometimes identified for multiple functional groups; differences in location and abundance of the motifs appear to ensure different modes of action. Conclusion The identification of positionally conserved over-represented upstream motifs throws light on putative regulatory elements for transcription in Pf.

  1. Songs in the desert : The Rabbis and Origen on spiritual ascent

    NARCIS (Netherlands)

    Poorthuis, Marcel; van Geest, Paul

    The songs in the desert serve both the Rabbis and Origen to sketch a development of spiritual growth. By comparing the songs chosen it is possible to assess the different perspectives: the Rabbis view Moses as the pinnacle, Origen avoids Moses and instead highlights Solomon and his Song of Songs as

  2. Socialism or Art: Yugoslav Mass Song and Its Institutionalizations

    Directory of Open Access Journals (Sweden)

    Srđan Atanasovski

    2017-09-01

    Full Text Available The genre of the mass song is one of the fundamental phenomena in aesthetics and practice of socialist realism. Mass songs are supposed not only to be accessible to the lay audience, but also to be composed in a way that invites the participation of amateurs. Importantly, the institutions which have been disseminating the mass song under state socialism, such as various institutions of education, culture and art, have also served as mechanisms for the normalization of its ideological content. This article summarizes important aspects of the concept of the mass song in general and offers a multifaceted exemplification, before proceeding to discuss the history of mass songs in socialist Yugoslavia (including, by and large, what is usually referred to as partisan songs, with emphasis on the institutional framework through which they were practiced and disseminated, and on specificities that the genre had accrued within the Yugoslav framework. This historical framework of practicing mass songs in Yugoslavia provides a platform for opening the question of intrinsic incompatibility between the project of a classless society and the institution of art. In regards to this, article discusses contemporary practice of Yugoslav mass songs as practiced by self-organized choirs and their new political potential.   Article received: May 6, 2017; Article accepted: May 14, 2017; Published online: September 15, 2017 Original scholarly paper How to cite this article: Atanasovski, Srđan. "Socialism or Art: Yugoslav Mass Song and Its Institutionalizations." AM Journal of Art and Media Studies 13 (2017: 31-42. doi: 10.25038/am.v0i13.185

  3. A Song in the Dark. Francis of Assisi’s Canticle of Brother Sun

    Directory of Open Access Journals (Sweden)

    Speelman Willem Marie

    2016-10-01

    Full Text Available The Canticle of the Creatures or Canticle of Brother Sun is based on a particular way of perceiving reality. Francis, who had turned away from ‘the world’, discovered a different way of looking at it. This is a divine way of perceiving, in which the senses do not grasp reality, but accept it as it communicates itself. This way of perceiving is only possible if one does not attempt to master the environment, but allows one’s senses to be weak. It is significant, therefore, that this song of praise was born at a moment of the utmost despair and weakness. The song’s content is in line with this weak perception: it is not about Francis who praises God and (or for His creatures, but rather it is a testimony that the creatures-the elements-are already praising God, and a prayer that He should let Himself be praised by the creatures. Also in line with this weak perception is the fact that the creatures are praised just as they communicate themselves to Francis: as bodies. The theology of this song is that the creatures through their bodies resonate (strengthen, and colour the blessings that come from God, thereby making His blessing present here on earth. Francis’ role is to give a voice and a language to the heavenly praises as they resound in his environment. The transformative power of this song is that we, whether consciously or not, do the same thing when we participate in this song.

  4. An Analysis of Moral and Educational Values on Madura Folk Songs

    OpenAIRE

    Wakil, Abdul

    2015-01-01

    At this moment traditional songs was not pay attention so that almost the traditional song is not well known by young generations. The position of traditional songs was lost with technology. If there is not an conservation and appreciation for traditional songs especially Madura traditional songs, so the traditional song can be lost in the future so that writer try to analysis of moral and educational values on Madura folk songs.The discussion in this thesis the author tried to review the ped...

  5. Melos: a Rhetoric Proof in Songs in Semiotic Perspective

    Directory of Open Access Journals (Sweden)

    Adriano Dantas de Oliveira

    2016-12-01

    Full Text Available We will have, in this work, the exposure of an approach to cancional text as a specific rhetorical situation. We assimilated the melos as all musical aspects of the song as a rhetorical proof that articulates the traditional trilogy: ethos, logos and pathos. We will use an interdisciplinary theoretical framework, articulating the classical rhetoric to semiotics applied to the song, exploring, from this model, discursive aspects of cancional text. As corpus, we have the analysis of a buarquiana song sample sociopolitical theme composed and recorded during the period of dictatorship.

  6. Achieving Sound Beauty in Chinese Translations of English Songs

    Institute of Scientific and Technical Information of China (English)

    陶薪平

    2017-01-01

    Song is a kind of combination of language and music. Song achieves its aesthetic information and arouses feeling with its own sentiments and aesthetic effect. However, various kinds of present problems lead to much loss of beauty. Besides, the theoretical works concerning this area is much meager. Translation of English songs into Chinese has been studied from functional equivalence theory or the functionalism. The present thesis offers a new perspective―beauty in sound from Xu Yuanchong's"three beauties principle", aiming to seek possible ways to represent beauty in translation practice, and some typical examples are compared and analyzed.

  7. Statistical tests to compare motif count exceptionalities

    Directory of Open Access Journals (Sweden)

    Vandewalle Vincent

    2007-03-01

    Full Text Available Abstract Background Finding over- or under-represented motifs in biological sequences is now a common task in genomics. Thanks to p-value calculation for motif counts, exceptional motifs are identified and represent candidate functional motifs. The present work addresses the related question of comparing the exceptionality of one motif in two different sequences. Just comparing the motif count p-values in each sequence is indeed not sufficient to decide if this motif is significantly more exceptional in one sequence compared to the other one. A statistical test is required. Results We develop and analyze two statistical tests, an exact binomial one and an asymptotic likelihood ratio test, to decide whether the exceptionality of a given motif is equivalent or significantly different in two sequences of interest. For that purpose, motif occurrences are modeled by Poisson processes, with a special care for overlapping motifs. Both tests can take the sequence compositions into account. As an illustration, we compare the octamer exceptionalities in the Escherichia coli K-12 backbone versus variable strain-specific loops. Conclusion The exact binomial test is particularly adapted for small counts. For large counts, we advise to use the likelihood ratio test which is asymptotic but strongly correlated with the exact binomial test and very simple to use.

  8. Seed storage protein gene promoters contain conserved DNA motifs in Brassicaceae, Fabaceae and Poaceae

    Science.gov (United States)

    Fauteux, François; Strömvik, Martina V

    2009-01-01

    Background Accurate computational identification of cis-regulatory motifs is difficult, particularly in eukaryotic promoters, which typically contain multiple short and degenerate DNA sequences bound by several interacting factors. Enrichment in combinations of rare motifs in the promoter sequence of functionally or evolutionarily related genes among several species is an indicator of conserved transcriptional regulatory mechanisms. This provides a basis for the computational identification of cis-regulatory motifs. Results We have used a discriminative seeding DNA motif discovery algorithm for an in-depth analysis of 54 seed storage protein (SSP) gene promoters from three plant families, namely Brassicaceae (mustards), Fabaceae (legumes) and Poaceae (grasses) using backgrounds based on complete sets of promoters from a representative species in each family, namely Arabidopsis (Arabidopsis thaliana (L.) Heynh.), soybean (Glycine max (L.) Merr.) and rice (Oryza sativa L.) respectively. We have identified three conserved motifs (two RY-like and one ACGT-like) in Brassicaceae and Fabaceae SSP gene promoters that are similar to experimentally characterized seed-specific cis-regulatory elements. Fabaceae SSP gene promoter sequences are also enriched in a novel, seed-specific E2Fb-like motif. Conserved motifs identified in Poaceae SSP gene promoters include a GCN4-like motif, two prolamin-box-like motifs and an Skn-1-like motif. Evidence of the presence of a variant of the TATA-box is found in the SSP gene promoters from the three plant families. Motifs discovered in SSP gene promoters were used to score whole-genome sets of promoters from Arabidopsis, soybean and rice. The highest-scoring promoters are associated with genes coding for different subunits or precursors of seed storage proteins. Conclusion Seed storage protein gene promoter motifs are conserved in diverse species, and different plant families are characterized by a distinct combination of conserved motifs

  9. Seed storage protein gene promoters contain conserved DNA motifs in Brassicaceae, Fabaceae and Poaceae

    Directory of Open Access Journals (Sweden)

    Fauteux François

    2009-10-01

    Full Text Available Abstract Background Accurate computational identification of cis-regulatory motifs is difficult, particularly in eukaryotic promoters, which typically contain multiple short and degenerate DNA sequences bound by several interacting factors. Enrichment in combinations of rare motifs in the promoter sequence of functionally or evolutionarily related genes among several species is an indicator of conserved transcriptional regulatory mechanisms. This provides a basis for the computational identification of cis-regulatory motifs. Results We have used a discriminative seeding DNA motif discovery algorithm for an in-depth analysis of 54 seed storage protein (SSP gene promoters from three plant families, namely Brassicaceae (mustards, Fabaceae (legumes and Poaceae (grasses using backgrounds based on complete sets of promoters from a representative species in each family, namely Arabidopsis (Arabidopsis thaliana (L. Heynh., soybean (Glycine max (L. Merr. and rice (Oryza sativa L. respectively. We have identified three conserved motifs (two RY-like and one ACGT-like in Brassicaceae and Fabaceae SSP gene promoters that are similar to experimentally characterized seed-specific cis-regulatory elements. Fabaceae SSP gene promoter sequences are also enriched in a novel, seed-specific E2Fb-like motif. Conserved motifs identified in Poaceae SSP gene promoters include a GCN4-like motif, two prolamin-box-like motifs and an Skn-1-like motif. Evidence of the presence of a variant of the TATA-box is found in the SSP gene promoters from the three plant families. Motifs discovered in SSP gene promoters were used to score whole-genome sets of promoters from Arabidopsis, soybean and rice. The highest-scoring promoters are associated with genes coding for different subunits or precursors of seed storage proteins. Conclusion Seed storage protein gene promoter motifs are conserved in diverse species, and different plant families are characterized by a distinct combination

  10. Evolutionary dynamics of a conserved sequence motif in the ribosomal genes of the ciliate Paramecium

    Directory of Open Access Journals (Sweden)

    Lynch Michael

    2010-05-01

    Full Text Available Abstract Background In protozoa, the identification of preserved motifs by comparative genomics is often impeded by difficulties to generate reliable alignments for non-coding sequences. Moreover, the evolutionary dynamics of regulatory elements in 3' untranslated regions (both in protozoa and metazoa remains a virtually unexplored issue. Results By screening Paramecium tetraurelia's 3' untranslated regions for 8-mers that were previously found to be preserved in mammalian 3' UTRs, we detect and characterize a motif that is distinctly conserved in the ribosomal genes of this ciliate. The motif appears to be conserved across Paramecium aurelia species but is absent from the ribosomal genes of four additional non-Paramecium species surveyed, including another ciliate, Tetrahymena thermophila. Motif-free ribosomal genes retain fewer paralogs in the genome and appear to be lost more rapidly relative to motif-containing genes. Features associated with the discovered preserved motif are consistent with this 8-mer playing a role in post-transcriptional regulation. Conclusions Our observations 1 shed light on the evolution of a putative regulatory motif across large phylogenetic distances; 2 are expected to facilitate the understanding of the modulation of ribosomal genes expression in Paramecium; and 3 reveal a largely unexplored--and presumably not restricted to Paramecium--association between the presence/absence of a DNA motif and the evolutionary fate of its host genes.

  11. Evolutionary dynamics of a conserved sequence motif in the ribosomal genes of the ciliate Paramecium.

    Science.gov (United States)

    Catania, Francesco; Lynch, Michael

    2010-05-04

    In protozoa, the identification of preserved motifs by comparative genomics is often impeded by difficulties to generate reliable alignments for non-coding sequences. Moreover, the evolutionary dynamics of regulatory elements in 3' untranslated regions (both in protozoa and metazoa) remains a virtually unexplored issue. By screening Paramecium tetraurelia's 3' untranslated regions for 8-mers that were previously found to be preserved in mammalian 3' UTRs, we detect and characterize a motif that is distinctly conserved in the ribosomal genes of this ciliate. The motif appears to be conserved across Paramecium aurelia species but is absent from the ribosomal genes of four additional non-Paramecium species surveyed, including another ciliate, Tetrahymena thermophila. Motif-free ribosomal genes retain fewer paralogs in the genome and appear to be lost more rapidly relative to motif-containing genes. Features associated with the discovered preserved motif are consistent with this 8-mer playing a role in post-transcriptional regulation. Our observations 1) shed light on the evolution of a putative regulatory motif across large phylogenetic distances; 2) are expected to facilitate the understanding of the modulation of ribosomal genes expression in Paramecium; and 3) reveal a largely unexplored--and presumably not restricted to Paramecium--association between the presence/absence of a DNA motif and the evolutionary fate of its host genes.

  12. A proposed vestigial translation initiation motif in VP1 of hepatitis A virus.

    Science.gov (United States)

    Kang, Jeong-Ah; Funkhouser, Ann W

    2002-07-01

    The internal ribosome entry site (IRES) of picornaviruses has a 3' polypyrimidine tract (PPT) 16-24 bases upstream of an AUG triplet (PPT/AUG motif). This motif is critical in determining the efficiency of cap-independent translation. HAV has a conserved PPT/AUG motif consisting of a nine base sequence (AGGUUUUUC) 23 bases upstream of the preferred AUG start codon. This HAV-specific PPT/AUG motif is repeated and conserved in VP1 of HAV, but not of other picornaviruses. We proposed that the PPT/AUG motif in the open reading frame initiated translation and/or had an impact on the life cycle of the virus. In vitro translation of mutant bicistronic mRNAs and growth in cell culture of mutant viruses provided no evidence that the VP1 PPT/AUG motif had any impact on either translation or growth. HAV differs from other picornaviruses in its inefficient growth in cell culture. Since the HAV-specific PPT/AUG motif is found in only 1 in 300,000 reported viral sequences outside the hepatovirus genus, this motif may be a vestigial translation initiation element and may have played a role in determining the unusual phenotype of HAV.

  13. Calling songs of some South African cicadas (Homoptera: Cicadidae)

    African Journals Online (AJOL)

    1987-07-13

    Jul 13, 1987 ... Figure 11 Posture of male cicadas during calling song, illustrated by a specimen ... parameters of the smaller samples falls within that of the largest conspecific ... under the control of the neuromuscular system (Pringle. 1954b).

  14. Grieg: Songs and dramatic works with orchestra. / Alan Blyth

    Index Scriptorium Estoniae

    Blyth, Alan

    1993-01-01

    Uuest heliplaadist "Grieg: Songs and dramatic works with orchestra. Barbara Bonney, Randi Stene, Hakan Hagegard, Ruth Tellefsen, Gothenburg Symphony Chorus and Orchestra, Neeme Järvi." CD 437 519 - 2GH

  15. GENDER ROLES IN PAKISTANI-URDU WEDDING SONGS

    Directory of Open Access Journals (Sweden)

    Syeda Bushra Zaidi

    2016-05-01

    Full Text Available This qualitative study of Pakistani-Urdu wedding songs allows a closer look at the gender situation, and towards the understanding of the process of construction and perpetuation of gender-based stereotypes. However, the major concern of this study is to understand the portrayal of each gender along with the question that does such portrayal underlines the traditional gender roles and gender inequality. Taking a discourse analysis perspective, this study analyzes textual data from the lyrics of the seventeen wedding songs. The song selection was based on purposive sampling technique. The data were collected through transcription and recording of the audios of the songs. As a result of thematic analysis thirteen themes emerged, ten portraying the female gender and four portraying the male gender. These themes reveal important findings that support and reinforce the gender-based stereotypes and also reflect gender hierarchy, normative heterosexual relationships, kinship norms and gender subversions.

  16. BayesMotif: de novo protein sorting motif discovery from impure datasets.

    Science.gov (United States)

    Hu, Jianjun; Zhang, Fan

    2010-01-18

    Protein sorting is the process that newly synthesized proteins are transported to their target locations within or outside of the cell. This process is precisely regulated by protein sorting signals in different forms. A major category of sorting signals are amino acid sub-sequences usually located at the N-terminals or C-terminals of protein sequences. Genome-wide experimental identification of protein sorting signals is extremely time-consuming and costly. Effective computational algorithms for de novo discovery of protein sorting signals is needed to improve the understanding of protein sorting mechanisms. We formulated the protein sorting motif discovery problem as a classification problem and proposed a Bayesian classifier based algorithm (BayesMotif) for de novo identification of a common type of protein sorting motifs in which a highly conserved anchor is present along with a less conserved motif regions. A false positive removal procedure is developed to iteratively remove sequences that are unlikely to contain true motifs so that the algorithm can identify motifs from impure input sequences. Experiments on both implanted motif datasets and real-world datasets showed that the enhanced BayesMotif algorithm can identify anchored sorting motifs from pure or impure protein sequence dataset. It also shows that the false positive removal procedure can help to identify true motifs even when there is only 20% of the input sequences containing true motif instances. We proposed BayesMotif, a novel Bayesian classification based algorithm for de novo discovery of a special category of anchored protein sorting motifs from impure datasets. Compared to conventional motif discovery algorithms such as MEME, our algorithm can find less-conserved motifs with short highly conserved anchors. Our algorithm also has the advantage of easy incorporation of additional meta-sequence features such as hydrophobicity or charge of the motifs which may help to overcome the limitations of

  17. Fitness for synchronization of network motifs

    DEFF Research Database (Denmark)

    Vega, Y.M.; Vázquez-Prada, M.; Pacheco, A.F.

    2004-01-01

    We study the synchronization of Kuramoto's oscillators in small parts of networks known as motifs. We first report on the system dynamics for the case of a scale-free network and show the existence of a non-trivial critical point. We compute the probability that network motifs synchronize, and fi...... that the fitness for synchronization correlates well with motifs interconnectedness and structural complexity. Possible implications for present debates about network evolution in biological and other systems are discussed....

  18. The Reflection of Israeli Society in Popular War Songs

    Science.gov (United States)

    2015-06-01

    festivals , musicals and movies (e.g. Woodstock Festival and the movie and the musical Hair). Rock music became more popular and it integrated into...history. The country’s best writers wrote songs and the best singers sang them in the most popular festivals and media channels. The collective...from a variety of angles. In addition to the plain text, it will pay attention to the music and the arrangement. It will examine the song’s

  19. Love songs, bird brains and diffusion tensor imaging.

    Science.gov (United States)

    De Groof, Geert; Van der Linden, Annemie

    2010-08-01

    The song control system of songbirds displays a remarkable seasonal neuroplasticity in species in which song output also changes seasonally. Thus far, this song control system has been extensively analyzed by histological and electrophysiological methods. However, these approaches do not provide a global view of the brain and/or do not allow repeated measurements, which are necessary to establish causal correlations between alterations in neural substrate and behavior. Research has primarily been focused on the song nuclei themselves, largely neglecting their interconnections and other brain regions involved in seasonally changing behavior. In this review, we introduce and explore the song control system of songbirds as a natural model for brain plasticity. At the same time, we point out the added value of the songbird brain model for in vivo diffusion tensor techniques and its derivatives. A compilation of the diffusion tensor imaging (DTI) data obtained thus far in this system demonstrates the usefulness of this in vivo method for studying brain plasticity. In particular, it is shown to be a perfect tool for long-term studies of morphological and cellular changes of specific brain circuits in different endocrine/photoperiod conditions. The method has been successfully applied to obtain quantitative measurements of seasonal changes of fiber tracts and nuclei from the song control system. In addition, outside the song control system, changes have been discerned in the optic chiasm and in an interhemispheric connection. DTI allows the detection of seasonal changes in a region analogous to the mammalian secondary auditory cortex and in regions of the 'social behavior network', an interconnected group of structures that controls multiple social behaviors, including aggression and courtship. DTI allows the demonstration, for the first time, that the songbird brain in its entirety exhibits an extreme seasonal plasticity which is not merely limited to the song control

  20. Masonic Song in Scotland: Folk Tunes and Community

    Directory of Open Access Journals (Sweden)

    Katherine Campbell

    2012-03-01

    Full Text Available This article explores the place of Masonic songs historically in Scotland, assessing the oral culture surrounding the genre. The article further shows that folk tunes were commonly used and investigates aspects of the group performance that was central to the Lodges. Finally, the study concludes with an examination of a Masonic procession in Northeast Scotland that survives to the present day, focusing especially on the role of music and song within it.

  1. Teaching ethics using popular songs: feeling and thinking.

    Science.gov (United States)

    O'Mathúna, Dónal P

    2008-01-01

    A connection has long been made between music and moral education. Recent discussions have focused on concerns that certain lyrics can lead to acceptance of violence, suicide, inappropriate views of women, and other unethical behaviour. Debate over whether such connections exist at least illustrates that popular songs engage listeners with ethical issues; this arises from the unique blend of emotional and cognitive reactions to music. And while the emotional side of ethics has received less attention than other aspects of ethics, it is important and music can be a powerful and unique tool to introduce the emotional aspects of ethics. Music appeals to almost everyone. Throughout history songs have rallied people to action and drawn people into deeper reflection. Music engages our emotions, our imagination and our intellect. Students already spend many hours listening to songs, some of which address ethical issues; it is thus an ideal pedagogic aid in teaching subjects like ethics. This article will discuss how carefully selected songs can encourage thoughtful reflection and critical thinking about ethical issues: a number of specific examples will be described, along with a discussion of the general practicalities of using popular songs in teaching ethics and a demonstration of how students learn to listen critically and actively reflect on the ethical messages they receive. The enjoyment of music helps to engage students with ethics and its relevance for their lives and careers. This article aims to share some of the excitement and enthusiasm that popular songs have brought to my teaching of ethics.

  2. Rekayasa Pengembangan Desain Motif Batik Khas Melayu

    Directory of Open Access Journals (Sweden)

    Eustasia Sri Murwati

    2016-04-01

    Full Text Available ABSTRAKPengembangan desain batik melalui rancang bangun perekayasaan desain menurut ragam hias Melayu meliputi pengembangan motif dan proses, termasuk pemilihan komposisi warna. Proses yang sering dilakukan yaitu proses celup, penghilangan lilin dan celup warna tumpangan atau proses colet, celup, penghilangan lilin atau celup kemudian penghilangan lilin yang disebut Batik Kelengan. Setiap pulau di Indonesia mempunyai ciri khas budaya dan kesenian yang dikenal dengan corak/ragam hias khas daerah, juga ornamen yang diminati oleh masyarakat dari daerah tersebut atau dari daerah lain. Kondisi demikian mendorong pertumbuhan industri kerajinan yang memanfaatkan unsur–unsur seni. Adapun motif yang diperoleh adalah: Ayam Berlaga, Bungo Matahari, Kuntum Bersanding, Lancang Kuning, Encong Kerinci, Durian Pecah, Bungo Bintang, Bungo Pauh Kecil, Riang-riang, Bungo Nagaro. Pengembangan desain tersebut dipilih 3 produk terbaik yang dinilai oleh 5 penilai yang ahli di bidang desain batik, yaitu motif Durian Pecah, Ayam Berlaga, dan Bungo Matahari. Rancang bangun diversifikasi desain dengan memanfaatkan unsur–unsur seni dan ketrampilan etnis Melayu yaitu pemilihan ragam hias dan motif batik Melayu untuk diterapkan ke bahan sandang dengan komposisi warna yang menarik, sehingga produk memenuhi selera konsumen. Memperbaiki keberagaman batik dengan meningkatkan desain produk antara lain menuangkan ragam hias Melayu ke dalam proses batik yang menggunakan berbagai macam warna sehingga komposisi warna memadai. Diperoleh hasil produk batik dengan ragam hias Melayu yang berkualitas dan komposisi warna yang sesuai dengan karakter ragam hias Melayu. Rancang bangun desain produk untuk mendapatkan formulasi desain serta kelayakan prosesnya dengan penekanan pada teknologi akrab lingkungan dilaksanakan dengan alternatif pendekatan yaitu penciptaan desain bentuk baru.Kata kunci: desain, batik, rancang bangun, ragam hias, MelayuABSTRACTDevelopment of batik design through

  3. Induction of chinook salmon growth hormone promoter activity by the adenosine 3',5'-monophosphate (cAMP)-dependent pathway involves two cAMP-response elements with the CGTCA motif and the pituitary-specific transcription factor Pit-1.

    Science.gov (United States)

    Wong, A O; Le Drean, Y; Liu, D; Hu, Z Z; Du, S J; Hew, C L

    1996-05-01

    In this study, the functional role of two cAMP-response elements (CRE) in the promoter of the chinook salmon GH gene and their interactions with the transcription factor Pit-1 in regulating GH gene expression were examined. A chimeric construct of the chloramphenicol acetyltransferase (CAT) reporter gene with the CRE-containing GH promoter (pGH.CAT) was transiently transfected into primary cultures of rainbow trout pituitary cells. The expression of CAT activity was stimulated by an adenylate cyclase activator forskolin as well as a membrane-permeant cAMP analog 8-bromo-cAMP. Furthermore, these stimulatory responses were inhibited by a protein kinase A inhibitor H89, suggesting that these CREs are functionally coupled to the adenylate cyclase-cAMP-protein kinase A cascade. This hypothesis is supported by parallel studies using GH4ZR7 cells, a rat pituitary cell line stably transfected with dopamine D2 receptors. In this cell line, D2 receptor activation is known to inhibit adenylate cyclase activity and cAMP synthesis. Stimulation with a nonselective dopamine agonist, apomorphine, or a D2-specific agonist, Ly171555, suppressed the expression of pGH.CAT in GH4ZR7 cells, and this inhibition was blocked by simultaneous treatment with forskolin. These results indicate that inhibition of the cAMP-dependent pathway reduces the basal promoter activity of the CRE-containing pGH.CAT. The functionality of these CREs was further confirmed by deletion analysis and site-specific mutagenesis. In trout pituitary cells, the cAMP inducibility of pGH.CAT was inhibited after deleting the CRE-containing sequence from the GH promoter. When the CRE-containing sequence was cloned into a CAT construct with a viral thymidine kinase promoter, a significant elevation of cAMP inducibility was observed. This stimulatory response, however, was abolished by mutating the core sequence, CGTCA, in these CREs, suggesting that these cis-acting elements confer cAMP inducibility to the salmon GH gene

  4. A survey of motif finding Web tools for detecting binding site motifs in ChIP-Seq data.

    Science.gov (United States)

    Tran, Ngoc Tam L; Huang, Chun-Hsi

    2014-02-20

    ChIP-Seq (chromatin immunoprecipitation sequencing) has provided the advantage for finding motifs as ChIP-Seq experiments narrow down the motif finding to binding site locations. Recent motif finding tools facilitate the motif detection by providing user-friendly Web interface. In this work, we reviewed nine motif finding Web tools that are capable for detecting binding site motifs in ChIP-Seq data. We showed each motif finding Web tool has its own advantages for detecting motifs that other tools may not discover. We recommended the users to use multiple motif finding Web tools that implement different algorithms for obtaining significant motifs, overlapping resemble motifs, and non-overlapping motifs. Finally, we provided our suggestions for future development of motif finding Web tool that better assists researchers for finding motifs in ChIP-Seq data.

  5. MSDmotif: exploring protein sites and motifs

    Directory of Open Access Journals (Sweden)

    Henrick Kim

    2008-07-01

    Full Text Available Abstract Background Protein structures have conserved features – motifs, which have a sufficient influence on the protein function. These motifs can be found in sequence as well as in 3D space. Understanding of these fragments is essential for 3D structure prediction, modelling and drug-design. The Protein Data Bank (PDB is the source of this information however present search tools have limited 3D options to integrate protein sequence with its 3D structure. Results We describe here a web application for querying the PDB for ligands, binding sites, small 3D structural and sequence motifs and the underlying database. Novel algorithms for chemical fragments, 3D motifs, ϕ/ψ sequences, super-secondary structure motifs and for small 3D structural motif associations searches are incorporated. The interface provides functionality for visualization, search criteria creation, sequence and 3D multiple alignment options. MSDmotif is an integrated system where a results page is also a search form. A set of motif statistics is available for analysis. This set includes molecule and motif binding statistics, distribution of motif sequences, occurrence of an amino-acid within a motif, correlation of amino-acids side-chain charges within a motif and Ramachandran plots for each residue. The binding statistics are presented in association with properties that include a ligand fragment library. Access is also provided through the distributed Annotation System (DAS protocol. An additional entry point facilitates XML requests with XML responses. Conclusion MSDmotif is unique by combining chemical, sequence and 3D data in a single search engine with a range of search and visualisation options. It provides multiple views of data found in the PDB archive for exploring protein structures.

  6. Two new genera and five new species of Mugadina-like small grass cicadas (Hemiptera: Cicadidae: Cicadettini) from Central and Eastern Australia: comparative morphology, songs, behaviour and distributions.

    Science.gov (United States)

    Ewart, A

    2018-04-20

    Moulds (2012) established the genus Mugadina for two small cicadas, M. marshalli (Distant) and M. emma (Goding and Froggatt), both grass inhabiting species known from Queensland and New South Wales. Both species are notable for their relatively simple 'ticking' songs. Moulds further noted that there were at least two superficially similar genera of cicadas, but each with different genitalia. This paper describes two new genera of small (9-15 mm body lengths) and distinctive grass cicadas with genitalia that are very similar to those of Mugadina, but possess clear morphological, colour and calling song differences. The new genera are: Heremusina n. gen. with two known species namely H. udeoecetes n. sp. and H. pipatio n. sp.; the second new genus is Xeropsalta n. gen., containing four known species, X. thomsoni n. sp., X. aridula n. sp., X. rattrayi n. sp., and X. festiva n. comb. Heremusina n. gen. species are described from the Alice Springs area of Northern Territory and the Cloncurry area of northwest Queensland, from arid to semi arid habitats. The Xeropsalta n. gen. species are described from western, southwest and central Queensland, and from the Simpson and Strzelecki Deserts in northeastern South Australia and northwestern New South Wales, respectively, all locations in very arid to arid habitats, but close to seasonal (often irregular) rivers and lakes. X. festiva n. comb. occurs in semi arid habitats in southern and southeastern Australia.        Detailed taxonomic descriptions are provided of the new species, together with distributions, habitats, and the calling songs. The Heremusina species emit songs with short repetitive buzzing echemes, the echeme durations differing between each species. The Xeropsalta songs are notable for their complexity, containing multiple elements with rapid changes of amplitudes and temporal structures, rather atypical of the songs of most small grass dwelling cicadas. Detailed song structures distinguishing each of

  7. The use of network analysis to study complex animal communication systems: a study on nightingale song.

    Science.gov (United States)

    Weiss, Michael; Hultsch, Henrike; Adam, Iris; Scharff, Constance; Kipper, Silke

    2014-06-22

    The singing of song birds can form complex signal systems comprised of numerous subunits sung with distinct combinatorial properties that have been described as syntax-like. This complexity has inspired inquiries into similarities of bird song to human language; but the quantitative analysis and description of song sequences is a challenging task. In this study, we analysed song sequences of common nightingales (Luscinia megarhynchos) by means of a network analysis. We translated long nocturnal song sequences into networks of song types with song transitions as connectors. As network measures, we calculated shortest path length and transitivity and identified the 'small-world' character of nightingale song networks. Besides comparing network measures with conventional measures of song complexity, we also found a correlation between network measures and age of birds. Furthermore, we determined the numbers of in-coming and out-going edges of each song type, characterizing transition patterns. These transition patterns were shared across males for certain song types. Playbacks with different transition patterns provided first evidence that these patterns are responded to differently and thus play a role in singing interactions. We discuss potential functions of the network properties of song sequences in the framework of vocal leadership. Network approaches provide biologically meaningful parameters to describe the song structure of species with extremely large repertoires and complex rules of song retrieval.

  8. Recognition of geriatric popular song repertoire: a comparison of geriatric clients and music therapy students.

    Science.gov (United States)

    VanWeelden, Kimberly; Cevasco, Andrea M

    2010-01-01

    The purposes of the current study were to determine geriatric clients' recognition of 32 popular songs and songs from musicals by asking whether they: (a) had heard the songs before; (b) could "name the tune" of each song; and (c) list the decade that each song was composed. Additionally, comparisons were made between the geriatric clients' recognition of these songs and by music therapy students' recognition of the same, songs, based on data from an earlier study (VanWeelden, Juchniewicz, & Cevasco, 2008). Results found 90% or more of the geriatric clients had heard 28 of the 32 songs, 80% or more of the graduate students had heard 20 songs, and 80% of the undergraduates had heard 18 songs. The geriatric clients correctly identified 3 songs with 80% or more accuracy, which the graduate students also correctly identified, while the undergraduates identified 2 of the 3 same songs. Geriatric clients identified the decades of 3 songs with 50% or greater accuracy. Neither the undergraduate nor graduate students identified any songs by the correct decade with over 50% accuracy. Further results are discussed.

  9. MOCCS: Clarifying DNA-binding motif ambiguity using ChIP-Seq data.

    Science.gov (United States)

    Ozaki, Haruka; Iwasaki, Wataru

    2016-08-01

    As a key mechanism of gene regulation, transcription factors (TFs) bind to DNA by recognizing specific short sequence patterns that are called DNA-binding motifs. A single TF can accept ambiguity within its DNA-binding motifs, which comprise both canonical (typical) and non-canonical motifs. Clarification of such DNA-binding motif ambiguity is crucial for revealing gene regulatory networks and evaluating mutations in cis-regulatory elements. Although chromatin immunoprecipitation sequencing (ChIP-seq) now provides abundant data on the genomic sequences to which a given TF binds, existing motif discovery methods are unable to directly answer whether a given TF can bind to a specific DNA-binding motif. Here, we report a method for clarifying the DNA-binding motif ambiguity, MOCCS. Given ChIP-Seq data of any TF, MOCCS comprehensively analyzes and describes every k-mer to which that TF binds. Analysis of simulated datasets revealed that MOCCS is applicable to various ChIP-Seq datasets, requiring only a few minutes per dataset. Application to the ENCODE ChIP-Seq datasets proved that MOCCS directly evaluates whether a given TF binds to each DNA-binding motif, even if known position weight matrix models do not provide sufficient information on DNA-binding motif ambiguity. Furthermore, users are not required to provide numerous parameters or background genomic sequence models that are typically unavailable. MOCCS is implemented in Perl and R and is freely available via https://github.com/yuifu/moccs. By complementing existing motif-discovery software, MOCCS will contribute to the basic understanding of how the genome controls diverse cellular processes via DNA-protein interactions. Copyright © 2016 Elsevier Ltd. All rights reserved.

  10. The Characteristics and Social Function of the Tujia People’s Tima Sacred Songs

    Institute of Scientific and Technical Information of China (English)

    Chen Qian

    2016-01-01

    word of the Tujia language: ‘Ti ’ means ‘to worship dei-ties’ and ‘Ma ’ means ‘people ’ . Thus basically‘Tima’ means ‘the people who worship deities’ and indeed tima shenge were especially sung dur-ing the performance of worship rituals. Looking at all expression of Tujia musical culture, only Tima songs are connected to elements of religion such as deities, scriptures, worship etc. In addition, the knowledge of Tima songs usually was transmitted from father to son, from generation to generation. The melody of Tima sacred songs was origina-ted from the melody of ox horn played by ancient Tujia tribes. Tima sacred songs were part of a com-prehensive musical form, which combined enter-tainment, worship of deities, communication with deities, lengthy instrumental pieces, poetry, and dance. It usually was aimed at certain practical re-sults such as e. g. exorcisms of demons, worship of‘heaven and earth’ , worship of ancestors, invita-tion of certain ‘gods ’ , realization of certain wi-shes, prevention and/or removal of disasters and other evils, blessing of animals, giving thanks for good weather for crops etc. In addition, there are two types of Tima performances: ( i) a large-scale collective type of worship called tiao baishou ( dancing and waving of hands ) and ( ii ) a more intimate or family type of worship called wan pusa ( praying for blessings from Bodhisattva) . Of these two, the family-scale Tima ritual-wan pusa-of-fers the easiest introduction to Tima and the Tujia people’ s religious beliefs. While Tima sacred songs support the personal religious convictions of members of the Tujia peo-ple, they also promoted the common ideology of the Tujia. In addition, as Tima-shamans ( or sor-cerers) also practiced medicine there were many Tima-shamans whose medical skills reached quite high levels. Such Tima-sorcerers were indeed re-garded as very capable people that had access to, and influence in, the world of gods and demons. These

  11. Motif discovery in ranked lists of sequences

    DEFF Research Database (Denmark)

    Nielsen, Morten Muhlig; Tataru, Paula; Madsen, Tobias

    2016-01-01

    Motif analysis has long been an important method to characterize biological functionality and the current growth of sequencing-based genomics experiments further extends its potential. These diverse experiments often generate sequence lists ranked by some functional property. There is therefore...... advantage of the regular expression feature, including enrichments for combinations of different microRNA seed sites. The method is implemented and made publicly available as an R package and supports high parallelization on multi-core machinery....... a growing need for motif analysis methods that can exploit this coupled data structure and be tailored for specific biological questions. Here, we present an exploratory motif analysis tool, Regmex (REGular expression Motif EXplorer), which offers several methods to evaluate the correlation of motifs...

  12. FROM REBEL SONGS TO MORO SONGS: POPULAR MUSIC AND MUSLIM FILIPINO PROTEST

    Directory of Open Access Journals (Sweden)

    Mary Talusan

    2010-06-01

    Full Text Available Rank-and-file supporters of the Bangsamoro rebellion (1972-1977 articulated their personal sentiments about the war in a genre called “rebelsongs.” The lyrics reveal that fighters’ personal aspirations often diverged from the official aims of separatist leaders. This article examines how rebel songs transitioned into “Moro songs” in the post-martial law era and why they came to more narrowly reflect the movement’s official goals of Moro unity and Islamic renewal. While Muslim separatists hinged their ideology on the concept of a shared religion and history distinct from the rest of the Philippines, the musical vehicle they approved to convey aspirations for political and religious autonomy was not, however, indigenous genres, such as tudtol or dindiken. Rather, Moro songs set Magindanaon lyrics to the melodies of American folk, country and rock ballads—such as Bryan Adams’s “Straight from the Heart”—to frame protests against the Philippine government’s incursion into the homeland, the fight for religion and calls for Muslim unity. By endorsing this hybrid genre to broadcast separatist goals, the movement opened up a communicative space for its message to internal and external audiences, across cultural and national boundaries.

  13. MotifNet: a web-server for network motif analysis.

    Science.gov (United States)

    Smoly, Ilan Y; Lerman, Eugene; Ziv-Ukelson, Michal; Yeger-Lotem, Esti

    2017-06-15

    Network motifs are small topological patterns that recur in a network significantly more often than expected by chance. Their identification emerged as a powerful approach for uncovering the design principles underlying complex networks. However, available tools for network motif analysis typically require download and execution of computationally intensive software on a local computer. We present MotifNet, the first open-access web-server for network motif analysis. MotifNet allows researchers to analyze integrated networks, where nodes and edges may be labeled, and to search for motifs of up to eight nodes. The output motifs are presented graphically and the user can interactively filter them by their significance, number of instances, node and edge labels, and node identities, and view their instances. MotifNet also allows the user to distinguish between motifs that are centered on specific nodes and motifs that recur in distinct parts of the network. MotifNet is freely available at http://netbio.bgu.ac.il/motifnet . The website was implemented using ReactJs and supports all major browsers. The server interface was implemented in Python with data stored on a MySQL database. estiyl@bgu.ac.il or michaluz@cs.bgu.ac.il. Supplementary data are available at Bioinformatics online. © The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com

  14. READING TEXT POPULAR SONG INDONESIA: STUDY SEMIOTIC-HEURISTIC

    Directory of Open Access Journals (Sweden)

    Rika Widawati

    2015-02-01

    Full Text Available Abstract. This paper is the result of the research that based on the phenomenon in Indonesia today. The texts of Indonesian popular songs that part of the literature which create new vocabularies or make the modification of old language. The structure of this work seems to be odd. It means the new vocabulary is different from the standard of Indonesian structure. The aim of this descriptions are the correction of (1 the mistake of the phenomenon in the text of Indonesian popular songs (2 the meaning of indonesian popular songs must be based on reading of semiotics and heuristic.  To describe this purpose, we use semiotic theory and structuralism. While the sources of this research are adopted from the texts of Indonesian popular songs which are published in 2000-2010 periode. Both Indonesian popular songs, either good songs or odd songs which has the value of good literature, namely which consist of good structure, poetic, romantic with symbolic style. Heuristically readings of the two text Indonesian songs indicate violations of linguistic rules either syntagmatic, paradigmatic, meaningfulness relations and composition. Keywords: the text of Indonesian popular song, semiotic, heuristic Abstrak. Tulisan ini merupakan hasil penelitian yang didasari oleh fenomena bahwa dewasa ini teks lagu populer Indonesia sebagai bagian dari karya sastra banyak menampilkan kosakata baru ataupun modifikasi kosakata lama, dengan komposisi yang dipandang “menyimpang” dari kaidah tata bahasa baku maupun konvensi sastra. Tulisan ini bertujuan untuk mendeskripsikan (1 fenomena struktur kebahasaan dalam teks lagu populer Indonesia dan (2 makna teks lagu populer Indonesia berdasarkan pembacaan semiotik-heuristik. Untuk mendeskripsikan hal tersebut digunakan teori semiotik dan strukturalisme. Sementara sumber data penelitian ini adalah teks lagu populer Indonesia tahun 2000 – 2010. Baik lagu-lagu yang dipandang menyimpang dari kaidah atau konvensi sastra maupun

  15. The language of poetic texts in contemporary Tuvan pop songs

    Directory of Open Access Journals (Sweden)

    Oyumaa M. Saaya

    2017-06-01

    Full Text Available The article presents a linguistic analysis of lyrics of modern Tuvan pop songs. While studying them is important for understanding contemporary songwriting in Tuva, it is also necessary to discover what linguistic means, functional styles and vocabulary are used by modern authors of popular lyrics. The study can also help identify how contemporary global trends influence songwriting in means of linguistics. Three groups of songs can be defined in Tuvan pop music. The first of them comprises songs written by both professional poets and amateurs with good writing skills. Their texts have homogenous literary style and are intended for general audience (rather than specific groups of listeners. They do not feature any jargon or youth slang. The second group consists of “songs of the people” which are still popular and relevant, but not classified as folklore. This group also contains songs previously banned by censorship, and those written by ex-convicts. Their lyrics differ in style, and the vocabulary is also heterogenous: they can include slang and contain vernacular language. The third group includes songs following popular global and Russian trends, which  triggered rapid evolution in Tuvan songwriting. There is significant number of authors or even creative unions, who write both lyric and music. They are stylistically uneven, contain a lot of neologisms, borrowed vocabulary, slang and jargon words and sometimes even macaronic (mixed language. The author provides a more in-depth analysis of lyrics belonging to the third group of songs. They can be divided into 6 thematic subgroups which greatly vary in lexical content and the use of tropes. The lyrics of contemporary Tuvan songs are quite close to the everyday language young people use. Active employment of jargon in the language of young and middle-aged people, especially in lyrics of modern songs, steadily decreases the literary norms of Tuvan language. The author emphasizes that

  16. Song learning and cognitive ability are not consistently related in a songbird.

    Science.gov (United States)

    Anderson, Rindy C; Searcy, William A; Peters, Susan; Hughes, Melissa; DuBois, Adrienne L; Nowicki, Stephen

    2017-03-01

    Learned aspects of song have been hypothesized to signal cognitive ability in songbirds. We tested this hypothesis in hand-reared song sparrows (Melospiza melodia) that were tutored with playback of adult songs during the critical period for song learning. The songs developed by the 19 male subjects were compared to the model songs to produce two measures of song learning: the proportion of notes copied from models and the average spectrogram cross-correlation between copied notes and model notes. Song repertoire size, which reflects song complexity, was also measured. At 1 year of age, subjects were given a battery of five cognitive tests that measured speed of learning in the context of a novel foraging task, color association, color reversal, detour-reaching, and spatial learning. Bivariate correlations between the three song measures and the five cognitive measures revealed no significant associations. As in other studies of avian cognition, different cognitive measures were for the most part not correlated with each other, and this result remained true when 22 hand-reared female song sparrows were added to the analysis. General linear mixed models controlling for effects of neophobia and nest of origin indicated that all three song measures were associated with better performance on color reversal and spatial learning but were associated with worse performance on novel foraging and detour-reaching. Overall, the results do not support the hypothesis that learned aspects of song signal cognitive ability.

  17. Degradation of rural and urban great tit song: testing transmission efficiency.

    Directory of Open Access Journals (Sweden)

    Emily J Mockford

    Full Text Available Acoustic signals play a fundamental role in avian territory defence and mate attraction. Several studies have now shown that spectral properties of bird song differ between urban and rural environments. Previously this has been attributed to competition for acoustic space as a result of low-frequency noise present in cities. However, the physical structure of urban areas may have a contributory effect. Here we investigate the sound degradation properties of woodland and city environments using both urban and rural great tit song. We show that although urban surroundings caused significantly less degradation to both songs, the transmission efficiency of rural song compared to urban song was significantly lower in the city. While differences between the two songs in woodland were generally minimal, some measures of the transmission efficiency of rural song were significantly lower than those of urban song, suggesting additional benefits to singing rural songs in this setting. In an attempt to create artificial urban song, we mimicked the increase in minimum frequency found several times previously in urban song. However, this did not replicate the same transmission properties as true urban song, suggesting changes in other song characteristics, such as temporal adjustments, are needed to further increase transmission of an avian signal in the city. We suggest that the structure of the acoustic environment, in addition to the background noise, plays an important role in signal adaptation.

  18. Amplitude modulation of sexy phrases is salient for song attractiveness in female canaries (Serinus canaria).

    Science.gov (United States)

    Pasteau, Magali; Ung, Davy; Kreutzer, Michel; Aubin, Thierry

    2012-07-01

    Song discrimination and recognition in songbird species have usually been studied by measuring responses to song playbacks. In female canaries, Serinus canaria, copulation solicitation displays (CSDs) are used as an index of female preferences, which are related to song recognition. Despite the fact that many studies underline the role of song syntax in this species, we observed that short segments of songs (a few seconds long) are enough for females to discriminate between conspecific and heterospecific songs, whereas such a short duration is not sufficient to identify the syntax rules. This suggests that other cues are salient for song recognition. In this experiment, we investigated the influence of amplitude modulation (AM) on the responses (CSDs) of female canaries to song playbacks. We used two groups of females: (1) raised in acoustic isolation and (2) raised in normal conditions. When adult, we tested their preferences for sexy phrases with different AMs. We broadcast three types of stimuli: (1) songs with natural canary AM, (2) songs with AM removed, or (3) song with wren Troglodytes troglodytes AM. Results indicate that female canaries prefer and have predispositions for a song type with the natural canary AM. Thus, this acoustic parameter is a salient cue for song attractiveness.

  19. On the composition of modal structures of Tuvan traditional songs

    Directory of Open Access Journals (Sweden)

    Ayasmaa D.-B. Baranmaa

    2017-06-01

    Full Text Available One of the most important aspects of musical language of song folklore of Tuvans – the scale – is as yet underinvestigated in contemporary Tuvan musicology. The author is studying the effect of structural principles in scale and sound gamut of Tuvan folk songs. The theory of monodic scales (S.P. Galitskaya, E.V. Gertsman, Yu.G. Kon, Kh.S. Kushnarev, etc. forms the methodological basis for the analysis. The object of our studies are manuscripts of traditional Tuvan songs published by Russian musicologists (A. N. Aksenov, Z. K. Kyrgys, etc. serves as material base for analysis. The analysis revealed that traditional Tuvan songs are usually based on two- or three-part composite gamut structures. This significantly enriched the substantial aspect of the process by complicating types of links between the sounds, making the medium more profound, compact and complete. Scale links and subscales were detected that can interconnect in four manners (discrete, monolithic, catenary, inclusive. Conjunction principles are illustrated by a few folk songs. Catenary and inclusive manners of conjunctions have been noticed to be dominating. A vast variety of different link combinations has been detected. This is a point where intonational abundance of folklore melos reveals its inexhaustibility.

  20. Principles of structure building in music, language and animal song

    Science.gov (United States)

    Rohrmeier, Martin; Zuidema, Willem; Wiggins, Geraint A.; Scharff, Constance

    2015-01-01

    Human language, music and a variety of animal vocalizations constitute ways of sonic communication that exhibit remarkable structural complexity. While the complexities of language and possible parallels in animal communication have been discussed intensively, reflections on the complexity of music and animal song, and their comparisons, are underrepresented. In some ways, music and animal songs are more comparable to each other than to language as propositional semantics cannot be used as indicator of communicative success or wellformedness, and notions of grammaticality are less easily defined. This review brings together accounts of the principles of structure building in music and animal song. It relates them to corresponding models in formal language theory, the extended Chomsky hierarchy (CH), and their probabilistic counterparts. We further discuss common misunderstandings and shortcomings concerning the CH and suggest ways to move beyond. We discuss language, music and animal song in the context of their function and motivation and further integrate problems and issues that are less commonly addressed in the context of language, including continuous event spaces, features of sound and timbre, representation of temporality and interactions of multiple parallel feature streams. We discuss these aspects in the light of recent theoretical, cognitive, neuroscientific and modelling research in the domains of music, language and animal song. PMID:25646520

  1. SONG-China Project: A Global Automated Observation Network

    Science.gov (United States)

    Yang, Z. Z.; Lu, X. M.; Tian, J. F.; Zhuang, C. G.; Wang, K.; Deng, L. C.

    2017-09-01

    Driven by advancements in technology and scientific objectives, data acquisition in observational astronomy has been changed greatly in recent years. Fully automated or even autonomous ground-based network of telescopes has now become a tendency for time-domain observational projects. The Stellar Observations Network Group (SONG) is an international collaboration with the participation and contribution of the Chinese astronomy community. The scientific goal of SONG is time-domain astrophysics such as asteroseismology and open cluster research. The SONG project aims to build a global network of 1 m telescopes equipped with high-precision and high-resolution spectrographs, and two-channel lucky-imaging cameras. It is the Chinese initiative to install a 50 cm binocular photometry telescope at each SONG node sharing the network platform and infrastructure. This work is focused on design and implementation in technology and methodology of SONG/50BiN, a typical ground-based network composed of multiple sites and a variety of instruments.

  2. SONG China project - participating in the global network

    Science.gov (United States)

    Deng, Licai; Xin, Yu; Zhang, Xiaobin; Li, Yan; Jiang, Xiaojun; Wang, Guomin; Wang, Kun; Zhou, Jilin; Yan, Zhengzhou; Luo, Zhiquan

    2013-01-01

    SONG (Stellar Observations Network Goup) is a low-cost ground based international collaboration aimed at two cutting edge problems in contemporary astrophysics in the time-domain: 1) Direct diagnostics of the internal structure of stars and 2) looking for and studying extra solar planets, possibly in the habitable zone. The general plan is to set up a network of 1m telescopes uniformly distributed in geographic latitude (in both hemispheres). China jointed the collaboration (initiated by Danish astronomers) at the very beginning. In addition to SONG's original plan (http://song.phys.au.dk), the Chinese team proposed a parallel photometry subnet work in the northern hemisphere, namely 50BiN (50cm Binocular Network, previously known as mini-SONG), to enable a large field photometric capability for the network, therefore maximising the potential of the network platform. The network will be able to produce nearly continuous time series observations of a number of selected objects with high resolution spectroscopy (SONG) and accurate photometry (50BiN), and to produce ultra-high accuracy photometry in dense field to look for micro-lensing events caused by planetary systems. This project has great synergy with Chinese Astronomical activities in Antarctica (Dome A), and other similar networks (e.g. LCOGT). The plan and current status of the project are overviewed in this poster.

  3. Principles of structure building in music, language and animal song.

    Science.gov (United States)

    Rohrmeier, Martin; Zuidema, Willem; Wiggins, Geraint A; Scharff, Constance

    2015-03-19

    Human language, music and a variety of animal vocalizations constitute ways of sonic communication that exhibit remarkable structural complexity. While the complexities of language and possible parallels in animal communication have been discussed intensively, reflections on the complexity of music and animal song, and their comparisons, are underrepresented. In some ways, music and animal songs are more comparable to each other than to language as propositional semantics cannot be used as indicator of communicative success or wellformedness, and notions of grammaticality are less easily defined. This review brings together accounts of the principles of structure building in music and animal song. It relates them to corresponding models in formal language theory, the extended Chomsky hierarchy (CH), and their probabilistic counterparts. We further discuss common misunderstandings and shortcomings concerning the CH and suggest ways to move beyond. We discuss language, music and animal song in the context of their function and motivation and further integrate problems and issues that are less commonly addressed in the context of language, including continuous event spaces, features of sound and timbre, representation of temporality and interactions of multiple parallel feature streams. We discuss these aspects in the light of recent theoretical, cognitive, neuroscientific and modelling research in the domains of music, language and animal song. © 2015 The Author(s) Published by the Royal Society. All rights reserved.

  4. Songs of the Universe - The AstroCappella Project

    Science.gov (United States)

    Boyd, P. T.; Smale, K. M.; Smale, A. P.

    2004-12-01

    The AstroCappella Project is a classroom-ready collection of upbeat pop songs, lesson plans, and background information, all rich in science content. It was developed as a collaboration between working research astronomers, educators, and a contemporary vocal band. A multimedia music CD ("AstroCappella 2.0") has been produced containing 13 astronomically correct songs with original lyrics and music. Song topics range from the Sun, Moon, planets and small bodies of the Solar System, through the Doppler shift, the nearest stars, and extra-solar planets, to radio astronomy, X-ray astronomy, and the Hubble Space Telescope and Swift astronomy satellites. The CD also contains extensive CD-ROM materials including science background information, curriculum notes, lesson plans and activities for each song, images, movies, and slide shows. The songs and accompanying information have been extensively field-tested, and align to the K-12 National Science Education Standards. The AstroCappella materials are in widespread use in classrooms and homes across the US, and are supplemented with frequent live performances and teacher workshops. We describe here the history, content, and educational strategy behind the AstroCappella Project, and the plans for its future development.

  5. Seismic structural fragility investigation for the San Onofre Nuclear Generating Station, Unit 1 (Project I); SONGS-1 AFWS Project

    International Nuclear Information System (INIS)

    Wesley, D.A.; Hashimoto, P.S.

    1982-04-01

    An evaluation of the seismic capacities of several of the San Onofre Nuclear Generating Station, Unit 1 (SONGS-1) structures was conducted to determine input to the overall probabilistic methodology developed by Lawrence Livermore National Laboratory. Seismic structural fragilities to be used as input consist of median seismic capacities and their variabilities due to randomness and uncertainty. Potential failure modes were identified for each of the SONGS-1 structures included in this study by establishing the seismic load-paths and comparing expected load distributions to available capacities for the elements of each load-path. Particular attention was given to possible weak links and details. The more likely failure modes were screened for more detailed investigation

  6. Shostakovich: Two Fables, Op. 4. Four Songs, Op. 46 / David Nice

    Index Scriptorium Estoniae

    Nice, David

    1994-01-01

    Uuest heliplaadist "Shostakovich: Two Fables, Op. 4. Four Songs, Op. 46. Songs on Verses by British Poets, Op. 140. From Jewish folk poetry, Op. 79. Gothenburg Symphony Orchestra / Neeme Järvi" DG CD 439860-2GH

  7. The song of the Seychelles Warbler Acrocephalus sechellensis, an island endemic

    NARCIS (Netherlands)

    Catchpole, C.K.; Komdeur, J.

    1993-01-01

    The Seychelles Warbler Acrocephalus sechellensis is a resident, cooperative breeder in a saturated, island environment, whose song structure diners significantly from European marshland Acrocephalus species. The song is transmitted within a more restricted frequency range, that which propagates most

  8. Rock Sparrow Song Reflects Male Age and Reproductive Success

    DEFF Research Database (Denmark)

    Nemeth, Erwin; Kempenaers, Bart; Matessi, Giuliano

    2012-01-01

    The evolution of mating signals is closely linked to sexual selection. Acoustic ornaments are often used as secondary sexual traits that signal the quality of the signaller. Here we show that song performance reflects age and reproductive success in the rock sparrow (Petronia petronia...... nests. Older males could be distinguished from yearlings by singing at lower rate and higher amplitudes. Our findings suggest that song rate may be used as a signal of age and together with song pitch as a signal of reproductive success in this species. Alternatively, younger and less successful males...... success. Males with higher breeding success sang at a lower rate and with a higher maximum frequency. We found also that older males gained more extra-pair young and had a higher overall breeding success, although they also differed almost significantly by having a higher loss of paternity in their own...

  9. Automated classification of RNA 3D motifs and the RNA 3D Motif Atlas

    Science.gov (United States)

    Petrov, Anton I.; Zirbel, Craig L.; Leontis, Neocles B.

    2013-01-01

    The analysis of atomic-resolution RNA three-dimensional (3D) structures reveals that many internal and hairpin loops are modular, recurrent, and structured by conserved non-Watson–Crick base pairs. Structurally similar loops define RNA 3D motifs that are conserved in homologous RNA molecules, but can also occur at nonhomologous sites in diverse RNAs, and which often vary in sequence. To further our understanding of RNA motif structure and sequence variability and to provide a useful resource for structure modeling and prediction, we present a new method for automated classification of internal and hairpin loop RNA 3D motifs and a new online database called the RNA 3D Motif Atlas. To classify the motif instances, a representative set of internal and hairpin loops is automatically extracted from a nonredundant list of RNA-containing PDB files. Their structures are compared geometrically, all-against-all, using the FR3D program suite. The loops are clustered into motif groups, taking into account geometric similarity and structural annotations and making allowance for a variable number of bulged bases. The automated procedure that we have implemented identifies all hairpin and internal loop motifs previously described in the literature. All motif instances and motif groups are assigned unique and stable identifiers and are made available in the RNA 3D Motif Atlas (http://rna.bgsu.edu/motifs), which is automatically updated every four weeks. The RNA 3D Motif Atlas provides an interactive user interface for exploring motif diversity and tools for programmatic data access. PMID:23970545

  10. iFORM: Incorporating Find Occurrence of Regulatory Motifs.

    Science.gov (United States)

    Ren, Chao; Chen, Hebing; Yang, Bite; Liu, Feng; Ouyang, Zhangyi; Bo, Xiaochen; Shu, Wenjie

    2016-01-01

    Accurately identifying the binding sites of transcription factors (TFs) is crucial to understanding the mechanisms of transcriptional regulation and human disease. We present incorporating Find Occurrence of Regulatory Motifs (iFORM), an easy-to-use and efficient tool for scanning DNA sequences with TF motifs described as position weight matrices (PWMs). Both performance assessment with a receiver operating characteristic (ROC) curve and a correlation-based approach demonstrated that iFORM achieves higher accuracy and sensitivity by integrating five classical motif discovery programs using Fisher's combined probability test. We have used iFORM to provide accurate results on a variety of data in the ENCODE Project and the NIH Roadmap Epigenomics Project, and the tool has demonstrated its utility in further elucidating individual roles of functional elements. Both the source and binary codes for iFORM can be freely accessed at https://github.com/wenjiegroup/iFORM. The identified TF binding sites across human cell and tissue types using iFORM have been deposited in the Gene Expression Omnibus under the accession ID GSE53962.

  11. The use of network analysis to study complex animal communication systems: a study on nightingale song

    OpenAIRE

    Weiss, Michael; Hultsch, Henrike; Adam, Iris; Scharff, Constance; Kipper, Silke

    2014-01-01

    The singing of song birds can form complex signal systems comprised of numerous subunits sung with distinct combinatorial properties that have been described as syntax-like. This complexity has inspired inquiries into similarities of bird song to human language; but the quantitative analysis and description of song sequences is a challenging task. In this study, we analysed song sequences of common nightingales (Luscinia megarhynchos) by means of a network analysis. We translated long nocturn...

  12. Copulatory courtship song in Lutzomyia migonei (Diptera: psychodidae).

    Science.gov (United States)

    Vigoder, Felipe M; Souza, Nataly A; Peixoto, Alexandre A

    2010-12-01

    Lutzomyia migonei is a vector of leishmaniasis with a wide distribution in South America, which could favour population differentiation and speciation. Cryptic species of the Lutzomyia longipalpis complex, the widely distributed sand fly vector of visceral leishmaniasis in Latin America, have previously been shown to display distinct copulation songs. We found that Lu. migonei males also produce a song during copulation. This "lovesong" presents short trains (6-8 pulses) with an inter-pulse interval around 26 ms and is potentially involved in cryptic female choice and insemination success.

  13. Philia and neikos in Keats’s 'Song of four faeries'

    Directory of Open Access Journals (Sweden)

    A.C. Swanepoel

    2007-07-01

    Full Text Available Despite the fact that Keats’s “Song of four faeries” received very little critical attention, the poem raises interesting issues regarding the creative and destructive forces in nature. The poem presents a conversation between the four elemental faeries about union and separation. Using Empedocles’ four-element theory of creation and change in nature as framework, this article explores through close reading how the form and content of the poem mirror creative and destructive natural processes. It concludes that both Empedocles’ concepts “philia” (the creative force, and “neikos” (the destructive force, feature in both form and content, but that “philia” is more prevalent in the form, whereas “neikos” is expressed mostly in the content of the poem. Furthermore, the natural changes presented in the poem suggest themselves in the form of the poem before they become evident in its content.

  14. Parallel motif extraction from very long sequences

    KAUST Repository

    Sahli, Majed; Mansour, Essam; Kalnis, Panos

    2013-01-01

    Motifs are frequent patterns used to identify biological functionality in genomic sequences, periodicity in time series, or user trends in web logs. In contrast to a lot of existing work that focuses on collections of many short sequences, modern

  15. Deciphering functional glycosaminoglycan motifs in development.

    Science.gov (United States)

    Townley, Robert A; Bülow, Hannes E

    2018-03-23

    Glycosaminoglycans (GAGs) such as heparan sulfate, chondroitin/dermatan sulfate, and keratan sulfate are linear glycans, which when attached to protein backbones form proteoglycans. GAGs are essential components of the extracellular space in metazoans. Extensive modifications of the glycans such as sulfation, deacetylation and epimerization create structural GAG motifs. These motifs regulate protein-protein interactions and are thereby repsonsible for many of the essential functions of GAGs. This review focusses on recent genetic approaches to characterize GAG motifs and their function in defined signaling pathways during development. We discuss a coding approach for GAGs that would enable computational analyses of GAG sequences such as alignments and the computation of position weight matrices to describe GAG motifs. Copyright © 2018 Elsevier Ltd. All rights reserved.

  16. Bayesian centroid estimation for motif discovery.

    Science.gov (United States)

    Carvalho, Luis

    2013-01-01

    Biological sequences may contain patterns that signal important biomolecular functions; a classical example is regulation of gene expression by transcription factors that bind to specific patterns in genomic promoter regions. In motif discovery we are given a set of sequences that share a common motif and aim to identify not only the motif composition, but also the binding sites in each sequence of the set. We propose a new centroid estimator that arises from a refined and meaningful loss function for binding site inference. We discuss the main advantages of centroid estimation for motif discovery, including computational convenience, and how its principled derivation offers further insights about the posterior distribution of binding site configurations. We also illustrate, using simulated and real datasets, that the centroid estimator can differ from the traditional maximum a posteriori or maximum likelihood estimators.

  17. Bayesian centroid estimation for motif discovery.

    Directory of Open Access Journals (Sweden)

    Luis Carvalho

    Full Text Available Biological sequences may contain patterns that signal important biomolecular functions; a classical example is regulation of gene expression by transcription factors that bind to specific patterns in genomic promoter regions. In motif discovery we are given a set of sequences that share a common motif and aim to identify not only the motif composition, but also the binding sites in each sequence of the set. We propose a new centroid estimator that arises from a refined and meaningful loss function for binding site inference. We discuss the main advantages of centroid estimation for motif discovery, including computational convenience, and how its principled derivation offers further insights about the posterior distribution of binding site configurations. We also illustrate, using simulated and real datasets, that the centroid estimator can differ from the traditional maximum a posteriori or maximum likelihood estimators.

  18. Does song complexity matter in an intra-sexual context in common blackbirds

    DEFF Research Database (Denmark)

    Hesler, Nana; Sacher, Thomas; Coppack, Timothy

    Bird song is thought to be subject of both inter- and intra-sexual selection and song complexity a signal of male quality. One aspect of song complexity, repertoire size, correlates with estimates of male quality in several passerine species.  The Common Blackbird (Turdus merula) has a large repe...

  19. Late Medieval Piety expressed in Song Manuscripts of the Devotio Moderna

    NARCIS (Netherlands)

    Burger, C.P.M.

    2008-01-01

    Booklets with song texts from houses belonging to one of the branches of the Devotio Moderna often contain texts of songs which had been sung earlier. However, the fact that such song texts were written down in booklets shows that they were valued by their owners, who chose to express their personal

  20. Female song rates in response to simulated intruder are positively related to reproductive success.

    Directory of Open Access Journals (Sweden)

    Kristal E Cain

    2015-10-01

    Full Text Available Bird song is well studied in males as a sexually selected behavior. However, although song is also common among females, it is infrequently examined and poorly understood. Research suggests that song is often used as a resource defense behavior and is important in female-female competition for limited resources, e.g. mates and territories. If so, song should be positively related to fitness and related to other resource defense behaviors, but this possibility has rarely been explored. Here we examine fitness estimates in relation to spontaneous song rates and song rates in response to a simulated intruder (playback, in the superb fairy-wren (Malurus cyaneus, a cooperatively breeding songbird. We also determine how song rates relate to other territorial defense behaviors. Song rate in response to playback, but not spontaneous song rate, was positively related to nest success and the number of fledglings produced by successful females. Further, response song rate was also correlated with other territorial defense behaviors (latency to respond and flights. This evidence supports the hypothesis that female song may be used in the context of female-female competition to improve access to limited reproductive resources, and suggests that song may provide direct fitness benefits.

  1. A Comparison of the Basic Song Repertoire of Vocal/Choral and Instrumental Music Education Majors.

    Science.gov (United States)

    Prickett, Carol A.; Bridges, Madeline S.

    2000-01-01

    Explores whether the basic song repertoire of vocal/choral music education majors is significantly better than instrumental music education majors. Participants attempted to identify 25 standard songs. Reveals no significant difference between the two groups, indicating that neither had developed a strong repertoire of songs. (CMK)

  2. The 'cognitive' and the 'emotive' component in Christian songs: Tracing the shifts in traditional and contemporary songs

    Directory of Open Access Journals (Sweden)

    J. Gertrud T�nsing

    2015-03-01

    Full Text Available This research article is based on the author�s doctoral research into the question of quality criteria for Christian songs. In many Christian congregations today, the question of music is an emotive issue as the service and its music touch the heart of people�s faith life and shapes people�s theology. Of the many issues that were investigated in the dissertation, this article focuses on one question only, the question of the �cognitive� and the �emotive� value of the songs that are sung in a Sunday service. It will be argued that, in �good� songs, there needs to be a good balance between �cognitive� and �emotive� value. The general question is how to identify songs that can nurture faith and sustain people through life. Characteristic of such songs is, amongst many other criteria, a good balance between the cognitive and emotive value of the text and the tune. In the discussion, the author focusses largely on her own Lutheran liturgical and hymnological tradition as well as on the �Praise and Worship� movement which has a dramatic impact on churches all over the world. The author argues that finding songs that balance the emotive and the cognitive component is an effective way to bridge the divides on worship music within a congregation.Intradisciplinary and/or interdisciplinary implications: Within the discipline of hymnological studies, the article opens a ground-breaking new way to analyse and critique music used in worship with objective tools for analysis. This is, as far as the author knows, new for this discipline, and it also has an effect on other disciplines.

  3. The mass and age of the first SONG target

    DEFF Research Database (Denmark)

    Frandsen, S.; Andersen, M. Fredslund; Brogaard, K.

    2018-01-01

    possibilities for ground-based asteroseismology of solar-like oscillations with a fully robotic network have been illustrated with the results obtained from just a single site of the SONG network. The window function is still a severe problem which will be solved when there are more nodes in the network....

  4. Songs about Cancer, Gene Expression, and the Biochemistry of Photosynthesis

    Science.gov (United States)

    Heineman, Richard H.

    2018-01-01

    These three biology songs can be used for educational purposes to teach about biochemical concepts. They touch on three different topics: (1) cancer progression and germ cells, (2) gene expression, promoters, and repressors, and (3) electronegativity and the biochemical basis of photosynthesis.

  5. "Not" Just Wanna Have Fun: Teaching Listening Skills with Songs

    Science.gov (United States)

    Abdullah, Amalia Qistina

    2013-01-01

    Teaching listening skills is very challenging to ESL teachers. It involves active participation from both teachers and students to ensure the objectives of teaching listening skills can be achieved. Hence, this presentation provides interesting and exciting strategies to teach listening skills using selected songs. It is hoped that this would…

  6. Environmental acoustics and the evolution of bird song

    NARCIS (Netherlands)

    Brumm, H.; Naguib, M.

    2009-01-01

    Any signal must get from a sender to a receiver if information is to be transmitted. In the case of bird song, the acoustic properties of the habitat may hinder this being achieved. However, birds as senders and receivers have evolved numerous adaptations to overcome the problem of getting the

  7. Facial temperature data Sing-a-Song StressTest

    NARCIS (Netherlands)

    Brouwer, A.M.

    2013-01-01

    We here introduce a new experimental paradigm to induce mental stress in a quick and easy way while adhering to ethical standards and controlling for potential confounds resulting from sensory input, body movements and behavior of people involved in conducting the experiment. In our Sing-a-Song

  8. Juegos, Canciones, Poemas y Adivinanzas (Games, Songs, Poems and Riddles).

    Science.gov (United States)

    Toro, Leonor; And Others

    Printed in Spanish, this booklet contains games, songs, poems, riddles, and sayings for use with Puerto Rican migrant children. Eleven matching exercises present Spanish vocabulary related to clothing, food, and musical instruments. Eleven word search games teach Spanish names for body parts, masculine and feminine nouns, famous names, fruits and…

  9. Teachers' Perspectives in Using Disney Songs in the Music Classroom

    Science.gov (United States)

    Lesser, Andrew

    2016-01-01

    Integrating popular music as part of the public school music curriculum has been a topic of debate among many educators and researchers. Songs from the Disney Corporation, specifically from movies, television shows, and performers specifically marketed by Disney, are particularly significant due to their widespread popularity. In this article, the…

  10. Alors, la chanson francaise? (And So, the French Song?)

    Science.gov (United States)

    Calvet, Louis Jean

    1977-01-01

    The introductory article in an issue devoted to songs as a teaching device. The article deals with English and American rock, folk and pop music. It makes the point that learning a language is also learning the culture of the people who speak the language. (Text is in French.) (AMH)

  11. Tula song folklore: genre-stylistic and dialectic peculiarities

    Directory of Open Access Journals (Sweden)

    Krasovskaya Nelli Alexandrovna

    2016-06-01

    Full Text Available The article analyzes the works of Tula folklore recorded in the western part of the Tula region, in terms of genre, stylistic and linguistic features. The relevance of the study is related to the fact that Tula folk songs has not been studied, linguistic features of the works are not subjected to serious analysis. The article describes the features of the genre of songs recorded in Belevsky district of Tula region, including the ancient fortunetelling chants, wedding ceremony songs, romantic ballads etc., it is cited numerous examples in the lyrics that reflect the dialectal features of the phonetic, grammatical, lexical levels. According to the authors, a modern folk song genre retains its diversity and is a kind of storeroom containing priceless linguistic wealth. The analysis allows to draw conclusions about the presence and well-preserved in the recorded music of South Russian dialect phonetic and grammatical features. So far, there is no established typology of Tula dialects, therefore, according to the authors, the fixation of folklore in the territories bordering on Tula dialects, is very important and interesting for further descriptive and comparative work on identifying the eastern and south-south-west differences in Tula dialects.

  12. Children's songs and human factor development: A comparative ...

    African Journals Online (AJOL)

    ... disparate cultural zones creates a fundamental human crisis. This is precisely the case because the two categories of songs advance diametrically variant and irreconcilable codes of cognitive enrichment. For instance, English nursery rhymes are part of the discursive infrastructure for solidifying European hegemony.

  13. Head movements encode emotions during speech and song.

    Science.gov (United States)

    Livingstone, Steven R; Palmer, Caroline

    2016-04-01

    When speaking or singing, vocalists often move their heads in an expressive fashion, yet the influence of emotion on vocalists' head motion is unknown. Using a comparative speech/song task, we examined whether vocalists' intended emotions influence head movements and whether those movements influence the perceived emotion. In Experiment 1, vocalists were recorded with motion capture while speaking and singing each statement with different emotional intentions (very happy, happy, neutral, sad, very sad). Functional data analyses showed that head movements differed in translational and rotational displacement across emotional intentions, yet were similar across speech and song, transcending differences in F0 (varied freely in speech, fixed in song) and lexical variability. Head motion specific to emotional state occurred before and after vocalizations, as well as during sound production, confirming that some aspects of movement were not simply a by-product of sound production. In Experiment 2, observers accurately identified vocalists' intended emotion on the basis of silent, face-occluded videos of head movements during speech and song. These results provide the first evidence that head movements encode a vocalist's emotional intent and that observers decode emotional information from these movements. We discuss implications for models of head motion during vocalizations and applied outcomes in social robotics and automated emotion recognition. (c) 2016 APA, all rights reserved).

  14. Shostakovich: The Orchestral Songs Vol. 2 / Michael Tanner

    Index Scriptorium Estoniae

    Tanner, Michael

    1996-01-01

    Uuest heliplaadist "Shostakovich: The Orchestral Songs Vol. 2: Six Romances on texts by Japanese poets, Op. 21. Six Poems on Marina Tsvetayeva, Op. 143. Suite on Verses of Michelangelo, Op. 145. Gothenburg Symphony Orchestra, Neeme Järvi". DG 447 085-2GH (71 minutes:DDD)

  15. Songs To Sing and Picture: Grades PreK-2.

    Science.gov (United States)

    Dudley, Lillian L.; Kinghorn, Harriet R.

    This resource, designed for both experienced music teachers and educators with limited background in music, combines 50 simple songs with related learning activities and reading suggestions to develop creativity in students and to reinforce learning in a variety of subjects. Each original composition has chord symbols for guitar and autoharp, with…

  16. Crab Hole Mosquito Blues — The Song

    Centers for Disease Control (CDC) Podcasts

    This podcast is a song about a major epizoodemic of a serious human and equine disease written and performed by the MARU Health Angels Band. Band members: K.M. Johnson, T.E. Walton (Retired); D.F. Antczak (Cornell University); W.H. Dietz (CDC); and D.H. Martin (Louisiana State University Health Science Center).

  17. Distributed Recognition of Natural Songs by European Starlings

    Science.gov (United States)

    Knudsen, Daniel; Thompson, Jason V.; Gentner, Timothy Q.

    2010-01-01

    Individual vocal recognition behaviors in songbirds provide an excellent framework for the investigation of comparative psychological and neurobiological mechanisms that support the perception and cognition of complex acoustic communication signals. To this end, the complex songs of European starlings have been studied extensively. Yet, several…

  18. Song convergence in multiple urban populations of silvereyes (Zosterops lateralis).

    Science.gov (United States)

    Potvin, Dominique A; Parris, Kirsten M

    2012-08-01

    Recent studies have revealed differences between urban and rural vocalizations of numerous bird species. These differences include frequency shifts, amplitude shifts, altered song speed, and selective meme use. If particular memes sung by urban populations are adapted to the urban soundscape, "urban-typical" calls, memes, or repertoires should be consistently used in multiple urban populations of the same species, regardless of geographic location. We tested whether songs or contact calls of silvereyes (Zosterops lateralis) might be subject to such convergent cultural evolution by comparing syllable repertoires of geographically dispersed urban and rural population pairs throughout southeastern Australia. Despite frequency and tempo differences between urban and rural calls, call repertoires were similar between habitat types. However, certain song syllables were used more frequently by birds from urban than rural populations. Partial redundancy analysis revealed that both geographic location and habitat characteristics were important predictors of syllable repertoire composition. These findings suggest convergent cultural evolution: urban populations modify both song and call syllables from their local repertoire in response to noise.

  19. Tokoh Kabayan Sebagai Inspirasi Torotot Heong the Song of Kabayan

    Directory of Open Access Journals (Sweden)

    DEDEN HAERUDIN

    2013-11-01

    Full Text Available Kabayan as an Inspiration of Torotot Heong The Song Of Kabayan. The theater art creation of Torotot Heongthe Song of Kabayan is a process that is inspired by the characters of folklore in Sundanese literature, Kabayan. InSundanese society, Kabayan is a stunt character from parable, a symbolic story, in the community as a media tonotify precept or wisdom. Kabayan is regarded as character with characteristic of Sundanese culture that hold on to“Cageur jeung Bageur” living guide (hale and healthy, and kind hearted. The creation process of Torotot Heongthe Song of Kabayan is performing into several stages and working methods according to Patri Pavis. It is startedby selecting the Kabayan’s Story to under take into the script. The next stage is doing some preparation for StagingProcess. The creating process is conducted through the mise en scene show’s appearance, perform into idea identification stage, artistic observation of cultural resources, the artist perspective and performance realization. TorototHeong the Song of Kabayan performances are the ultimate stage for the creative process of the hardworking teamwith a lot of effort to accomplish a communicative performance and appreciate well by the audience.

  20. Invasive plant erodes local song diversity in a migratory passerine

    Science.gov (United States)

    Yvette K. Ortega; Aubree Benson; Erick Greene

    2014-01-01

    Exotic plant invasions threaten ecosystems globally, but we still know little about the specific consequences for animals. Invasive plants can alter the quality of breeding habitat for songbirds, thereby impacting important demographic traits such as dispersal, philopatry, and age structure. These demographic effects may in turn alter song-learning conditions to affect...

  1. Using Songs To Support Vocabulary Learning For Grade Four Pupils

    Directory of Open Access Journals (Sweden)

    Rashid Al-Azri

    2015-06-01

    Full Text Available Abstract Over the recent years the teaching of foreign language vocabulary has been the subject of much discussion and arguments and a number of research and methodology books on such topic have emerged as it is the case for example with Nation 2001 and Schmitt 2000. For a long time grammar seemed to have attracted more attention but this renewed interest in vocabulary reflects the belief that it is becoming a major component in knowing a language and as some recent scholars would admit even more important than grammar already. In addition to the various strategies used to promote vocabulary learning in the classroom environment songs are widely being used nowadays as a powerful tool in teaching new vocabulary to early grades pupils. Throughout our teaching of young learners we have noticed that they are amazingly captured by songs and they always enjoy listening to them. This might be one of the main reasons why songs have now become one of the cornerstones in the demanding and challenging process of teaching children. The purpose of this research paper is to find out as to what extent and how the use of songs may support new vocabulary learning for grade four pupils in Oman and how much it actually helps these young learners in developing their vocabulary learning habits.

  2. Neural mechanisms of song memory formation in juvenile zebra finches

    NARCIS (Netherlands)

    Moorman, S.

    2015-01-01

    There are many parallels between the acquisition of spoken language in human infants and song learning in songbirds, at the behavioural, neural, genetic and cognitive levels. Both human infants and juvenile songbirds are able to imitate sounds from adults of the same species (often their parents),

  3. Preserving American Folk Heritage through Story and Song.

    Science.gov (United States)

    Jalongo, Mary Renck

    Underscoring folklore's appropriateness to multicultural classroom settings are its connection with past and present cultures, its constancy and change, and its potential for oral transmission of human values. Most importantly, folktales and songs enable children to participate in the history of universal human emotions. To effectively include…

  4. The Use of Song Worksheet to Enhance EFL Elementary School Students’ Vocabulary Mastery

    Directory of Open Access Journals (Sweden)

    Ahmad Fadhli

    2017-01-01

    Full Text Available This study aimed to enhance students’ vocabulary mastery through the use of song worksheet. Twenty -two fourth graders of an elementary school in Indonesia were selected as participants. Action research was adopted in this study consisting of three cycles. To find out students’ achievement, vocabulary test was given. To investigate students’ responses, observation and interview were implemented.Findings showed that song worksheet could enhance students’ vocabulary mastery. They also gave positive responses to the use of song worksheet. However, students complained that the songs were too fast. This study supports the use of songs in the EFL context which could make teaching - learning processes more fun

  5. Space-related pharma-motifs for fast search of protein binding motifs and polypharmacological targets.

    Science.gov (United States)

    Chiu, Yi-Yuan; Lin, Chun-Yu; Lin, Chih-Ta; Hsu, Kai-Cheng; Chang, Li-Zen; Yang, Jinn-Moon

    2012-01-01

    To discover a compound inhibiting multiple proteins (i.e. polypharmacological targets) is a new paradigm for the complex diseases (e.g. cancers and diabetes). In general, the polypharmacological proteins often share similar local binding environments and motifs. As the exponential growth of the number of protein structures, to find the similar structural binding motifs (pharma-motifs) is an emergency task for drug discovery (e.g. side effects and new uses for old drugs) and protein functions. We have developed a Space-Related Pharmamotifs (called SRPmotif) method to recognize the binding motifs by searching against protein structure database. SRPmotif is able to recognize conserved binding environments containing spatially discontinuous pharma-motifs which are often short conserved peptides with specific physico-chemical properties for protein functions. Among 356 pharma-motifs, 56.5% interacting residues are highly conserved. Experimental results indicate that 81.1% and 92.7% polypharmacological targets of each protein-ligand complex are annotated with same biological process (BP) and molecular function (MF) terms, respectively, based on Gene Ontology (GO). Our experimental results show that the identified pharma-motifs often consist of key residues in functional (active) sites and play the key roles for protein functions. The SRPmotif is available at http://gemdock.life.nctu.edu.tw/SRP/. SRPmotif is able to identify similar pharma-interfaces and pharma-motifs sharing similar binding environments for polypharmacological targets by rapidly searching against the protein structure database. Pharma-motifs describe the conservations of binding environments for drug discovery and protein functions. Additionally, these pharma-motifs provide the clues for discovering new sequence-based motifs to predict protein functions from protein sequence databases. We believe that SRPmotif is useful for elucidating protein functions and drug discovery.

  6. Acoustic foundations of the speech-to-song illusion.

    Science.gov (United States)

    Tierney, Adam; Patel, Aniruddh D; Breen, Mara

    2018-06-01

    In the "speech-to-song illusion," certain spoken phrases are heard as highly song-like when isolated from context and repeated. This phenomenon occurs to a greater degree for some stimuli than for others, suggesting that particular cues prompt listeners to perceive a spoken phrase as song. Here we investigated the nature of these cues across four experiments. In Experiment 1, participants were asked to rate how song-like spoken phrases were after each of eight repetitions. Initial ratings were correlated with the consistency of an underlying beat and within-syllable pitch slope, while rating change was linked to beat consistency, within-syllable pitch slope, and melodic structure. In Experiment 2, the within-syllable pitch slope of the stimuli was manipulated, and this manipulation changed the extent to which participants heard certain stimuli as more musical than others. In Experiment 3, the extent to which the pitch sequences of a phrase fit a computational model of melodic structure was altered, but this manipulation did not have a significant effect on musicality ratings. In Experiment 4, the consistency of intersyllable timing was manipulated, but this manipulation did not have an effect on the change in perceived musicality after repetition. Our methods provide a new way of studying the causal role of specific acoustic features in the speech-to-song illusion via subtle acoustic manipulations of speech, and show that listeners can rapidly (and implicitly) assess the degree to which nonmusical stimuli contain musical structure. (PsycINFO Database Record (c) 2018 APA, all rights reserved).

  7. Long-time storage of song types in birds: evidence from interactive playbacks.

    Science.gov (United States)

    Geberzahn, Nicole; Hultsch, Henrike

    2003-05-22

    In studies of birdsong learning, imitation-based assays of stimulus memorization do not take into account that tutored song types may have been stored, but were not retrieved from memory. Such a 'silent' reservoir of song material could be used later in the bird's life, e.g. during vocal interactions. We examined this possibility in hand-reared nightingales during their second year. The males had been exposed to songs, both as fledglings and later, during their first full song period in an interactive playback design. Our design allowed us to compare the performance of imitations from the following categories: (i) songs only experienced during the early tutoring; (ii) songs experienced both during early tutoring and interactive playbacks; and (iii) novel songs experienced only during the simulated interactions. In their second year, birds imitated song types from each category, including those from categories (i) and (ii) which they had failed to imitate before. In addition, the performance of these song types was different (category (ii) > category (i)) and more pronounced than for category (iii) songs. Our results demonstrate 'silent' song storage in nightingales and point to a graded influence of the time and the social context of experience on subsequent vocal imitation.

  8. AHP 37: AN INTRODUCTION TO AMDO TIBETAN LOVE SONGS, OR LA GZHAS

    Directory of Open Access Journals (Sweden)

    Skal bzang nor bu སྐལ་བཟང་ནོར་བུ།

    2015-06-01

    Full Text Available La gzhas , or Amdo Tibetan love songs, are sung between young men and women to express their love to each other. Several terms are available for this type of love song in Amdo Tibetan. La gzhas is the most common term for such songs in written Tibetan, la meaning 'mountain pass' and gzhas 'song'. In oral Amdo Tibetan, it is la-ye , a homophone of the literary term. Ri glu literally means mountain song, and this term matches the Chinese term for love songs, shan'ge. These two terms indicate where this song is often sung, in the mountains, far away from houses, villages and tents, in places where there are few people around. Rogs 'then has a more romantic connotation, rogs meaning friend or lover, and 'then meaning to pull, or hookup. ...

  9. Fuzzy cluster analysis on trace elements of Hangzhou Jiaotan Guan Porcelain

    International Nuclear Information System (INIS)

    Gao Zhengyao; Liu Youe; Chen Songhua

    1997-01-01

    Forty samples of South Song 'Jiaotan Guankiln' are analyzed by neutron activation analysis (NAA). The 36 trace element contents in every sample are determined. This trace elements are analyzed by fuzzy cluster method. The result shows that the source of glaze raw material of South Song Guan porcelain is clearly different from that of the body raw material. For Guan kiln of South Song dynasty there was a very stable and lasting source of raw material of glaze and body. The archaeological problems are clarified. The glaze material and body material of modern Guan porcelain are different from those of the ancient Guan Porcelain

  10. The MHC motif viewer: a visualization tool for MHC binding motifs

    DEFF Research Database (Denmark)

    Rapin, Nicolas; Hoof, Ilka; Lund, Ole

    2010-01-01

    is hampered by the lack of tools for browsing and comparing specificity of these molecules. We have developed a Web server, MHC Motif Viewer, which allows the display of the binding motif for MHC class I proteins for human, chimpanzee, rhesus monkey, mouse, and swine, as well as HLA-DR protein sequences...

  11. Social context-induced song variation affects female behavior and gene expression.

    Directory of Open Access Journals (Sweden)

    Sarah C Woolley

    2008-03-01

    Full Text Available Social cues modulate the performance of communicative behaviors in a range of species, including humans, and such changes can make the communication signal more salient. In songbirds, males use song to attract females, and song organization can differ depending on the audience to which a male sings. For example, male zebra finches (Taeniopygia guttata change their songs in subtle ways when singing to a female (directed song compared with when they sing in isolation (undirected song, and some of these changes depend on altered neural activity from a specialized forebrain-basal ganglia circuit, the anterior forebrain pathway (AFP. In particular, variable activity in the AFP during undirected song is thought to actively enable syllable variability, whereas the lower and less-variable AFP firing during directed singing is associated with more stereotyped song. Consequently, directed song has been suggested to reflect a "performance" state, and undirected song a form of vocal motor "exploration." However, this hypothesis predicts that directed-undirected song differences, despite their subtlety, should matter to female zebra finches, which is a question that has not been investigated. We tested female preferences for this natural variation in song in a behavioral approach assay, and we found that both mated and socially naive females could discriminate between directed and undirected song-and strongly preferred directed song. These preferences, which appeared to reflect attention especially to aspects of song variability controlled by the AFP, were enhanced by experience, as they were strongest for mated females responding to their mate's directed songs. We then measured neural activity using expression of the immediate early gene product ZENK, and found that social context and song familiarity differentially modulated the number of ZENK-expressing cells in telencephalic auditory areas. Specifically, the number of ZENK-expressing cells in the

  12. Exaggeration of Language-Specific Rhythms in English and French Children's Songs.

    Science.gov (United States)

    Hannon, Erin E; Lévêque, Yohana; Nave, Karli M; Trehub, Sandra E

    2016-01-01

    The available evidence indicates that the music of a culture reflects the speech rhythm of the prevailing language. The normalized pairwise variability index (nPVI) is a measure of durational contrast between successive events that can be applied to vowels in speech and to notes in music. Music-language parallels may have implications for the acquisition of language and music, but it is unclear whether native-language rhythms are reflected in children's songs. In general, children's songs exhibit greater rhythmic regularity than adults' songs, in line with their caregiving goals and frequent coordination with rhythmic movement. Accordingly, one might expect lower nPVI values (i.e., lower variability) for such songs regardless of culture. In addition to their caregiving goals, children's songs may serve an intuitive didactic function by modeling culturally relevant content and structure for music and language. One might therefore expect pronounced rhythmic parallels between children's songs and language of origin. To evaluate these predictions, we analyzed a corpus of 269 English and French songs from folk and children's music anthologies. As in prior work, nPVI values were significantly higher for English than for French children's songs. For folk songs (i.e., songs not for children), the difference in nPVI for English and French songs was small and in the expected direction but non-significant. We subsequently collected ratings from American and French monolingual and bilingual adults, who rated their familiarity with each song, how much they liked it, and whether or not they thought it was a children's song. Listeners gave higher familiarity and liking ratings to songs from their own culture, and they gave higher familiarity and preference ratings to children's songs than to other songs. Although higher child-directedness ratings were given to children's than to folk songs, French listeners drove this effect, and their ratings were uniquely predicted by n

  13. Armadillo motifs involved in vesicular transport.

    Directory of Open Access Journals (Sweden)

    Harald Striegl

    Full Text Available Armadillo (ARM repeat proteins function in various cellular processes including vesicular transport and membrane tethering. They contain an imperfect repeating sequence motif that forms a conserved three-dimensional structure. Recently, structural and functional insight into tethering mediated by the ARM-repeat protein p115 has been provided. Here we describe the p115 ARM-motifs for reasons of clarity and nomenclature and show that both sequence and structure are highly conserved among ARM-repeat proteins. We argue that there is no need to invoke repeat types other than ARM repeats for a proper description of the structure of the p115 globular head region. Additionally, we propose to define a new subfamily of ARM-like proteins and show lack of evidence that the ARM motifs found in p115 are present in other long coiled-coil tethering factors of the golgin family.

  14. Direct AUC optimization of regulatory motifs.

    Science.gov (United States)

    Zhu, Lin; Zhang, Hong-Bo; Huang, De-Shuang

    2017-07-15

    The discovery of transcription factor binding site (TFBS) motifs is essential for untangling the complex mechanism of genetic variation under different developmental and environmental conditions. Among the huge amount of computational approaches for de novo identification of TFBS motifs, discriminative motif learning (DML) methods have been proven to be promising for harnessing the discovery power of accumulated huge amount of high-throughput binding data. However, they have to sacrifice accuracy for speed and could fail to fully utilize the information of the input sequences. We propose a novel algorithm called CDAUC for optimizing DML-learned motifs based on the area under the receiver-operating characteristic curve (AUC) criterion, which has been widely used in the literature to evaluate the significance of extracted motifs. We show that when the considered AUC loss function is optimized in a coordinate-wise manner, the cost function of each resultant sub-problem is a piece-wise constant function, whose optimal value can be found exactly and efficiently. Further, a key step of each iteration of CDAUC can be efficiently solved as a computational geometry problem. Experimental results on real world high-throughput datasets illustrate that CDAUC outperforms competing methods for refining DML motifs, while being one order of magnitude faster. Meanwhile, preliminary results also show that CDAUC may also be useful for improving the interpretability of convolutional kernels generated by the emerging deep learning approaches for predicting TF sequences specificities. CDAUC is available at: https://drive.google.com/drive/folders/0BxOW5MtIZbJjNFpCeHlBVWJHeW8 . dshuang@tongji.edu.cn. Supplementary data are available at Bioinformatics online. © The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com

  15. An enhanced computational platform for investigating the roles of regulatory RNA and for identifying functional RNA motifs

    OpenAIRE

    Chang, Tzu-Hao; Huang, Hsi-Yuan; Hsu, Justin Bo-Kai; Weng, Shun-Long; Horng, Jorng-Tzong; Huang, Hsien-Da

    2013-01-01

    Background Functional RNA molecules participate in numerous biological processes, ranging from gene regulation to protein synthesis. Analysis of functional RNA motifs and elements in RNA sequences can obtain useful information for deciphering RNA regulatory mechanisms. Our previous work, RegRNA, is widely used in the identification of regulatory motifs, and this work extends it by incorporating more comprehensive and updated data sources and analytical approaches into a new platform. Methods ...

  16. Songs of the roots: rizítika and mandinádhes

    DEFF Research Database (Denmark)

    Sanfratello, Giuseppe

    2016-01-01

    centuries, is an essential element of Cretan culture and identity. In the following pages, I will provide an analysis of this Cretan musical repertoire based on the data I collected over my Erasmus period of research and study in Rethymno. I will further draw on the research of Roberto Leydi and Tullia......According to the Cretans, the genre of the rizìtiko song is the most important of the western part of Crete. In addition, the singing of the mandinàdhes is a symbolic process which bonds men and the landscape together. This particular kind of musical practice, today as well as over the past...... Magrini, i.e. two Italian ethnomusicologists who thirty years ago led important research on the vocal and instrumental music of Crete. Moreover, I have taken into consideration the most recent and detailed contribution of the Cretan ethnomusicologist Maria Hnaràki. In addition, I discuss the results...

  17. Of mice, birds, and men: the mouse ultrasonic song system has some features similar to humans and song-learning birds.

    Directory of Open Access Journals (Sweden)

    Gustavo Arriaga

    Full Text Available Humans and song-learning birds communicate acoustically using learned vocalizations. The characteristic features of this social communication behavior include vocal control by forebrain motor areas, a direct cortical projection to brainstem vocal motor neurons, and dependence on auditory feedback to develop and maintain learned vocalizations. These features have so far not been found in closely related primate and avian species that do not learn vocalizations. Male mice produce courtship ultrasonic vocalizations with acoustic features similar to songs of song-learning birds. However, it is assumed that mice lack a forebrain system for vocal modification and that their ultrasonic vocalizations are innate. Here we investigated the mouse song system and discovered that it includes a motor cortex region active during singing, that projects directly to brainstem vocal motor neurons and is necessary for keeping song more stereotyped and on pitch. We also discovered that male mice depend on auditory feedback to maintain some ultrasonic song features, and that sub-strains with differences in their songs can match each other's pitch when cross-housed under competitive social conditions. We conclude that male mice have some limited vocal modification abilities with at least some neuroanatomical features thought to be unique to humans and song-learning birds. To explain our findings, we propose a continuum hypothesis of vocal learning.

  18. [Professor SONG Nanchang's experience for treatment of peripheral facial paralysis].

    Science.gov (United States)

    He, Yong; Pan, Hao; Xu, Hanbin

    2015-06-01

    Professor SONG Nanchang's clinical experience and characteristics for treatment of peripheral facial paralysis are introduced. In clinical treatment, professor SONG has adopted staging treatment strategy, and performed acupuncture stimulation with different levels. He attaches great importance to the acupoint selection on distal limbs. For the treatment on the face, he takes temperature as necessity; he inherits from famous Chinese doctor ZONG Ruilin's acupuncture technique of slow-twisting and gentle-pressing. Meanwhile, he excels in combination, of different therapies, using acupuncture, moxibustion, electroacupuncture, auricular point sticking, Chinese herbal medicine, etc. according to individual condition and disease stages. He also emphasizes on psychological counseling and daily life care to achieve rehabilitation within the shortest time.

  19. AHP 12: Silence in the Valley of Songs

    Directory of Open Access Journals (Sweden)

    zla ba sgrol ma ཟླ་བ་སྒྲོལ་མ།

    2012-01-01

    Full Text Available The text and more than one hundred full-page color plates document Tibetan folk music (particularly work songs, and local life in the Sman shod Valley, Sde dge County, Dkar mdzes Tibetan Autonomous Prefecture, Sichuan Province, China. Bo nyed, a local elder, describes the situation that motivated this timely documentation, "In the past we sang constantly, but now people don't sing no matter where they are or what they are doing. Now everyone is silent." The text includes richly contextualized and annotated transcriptions of the songs' Tibetan lyrics with English translations. Audio materials related to this publication can be found at: http://www.oralliterature.org/collections/zlaba001.html

  20. Living, Breathing Songs: Singing Along with Bob Dylan

    Directory of Open Access Journals (Sweden)

    Keith Negus

    2007-03-01

    Full Text Available Taking issue with approaches to Bob Dylan’s art that are preoccupied with his lyrics, this article suggests a route into thinking about his music by focusing on how Dylan’s vocal melodies work at the intersection of speech and singing. Drawing on Gino Stefani’s work on popular melodies, this article explores this issue through a discussion of how people sing along with Dylan’s songs at concerts. The discussion focuses on the song “It Ain’t Me Babe,” and examines more general points about the ways in which Dylan’s melodies connect with the everyday lives of his listeners.

  1. National Metrical Types in Nineteenth Century Art Song

    Directory of Open Access Journals (Sweden)

    Leigh VanHandel

    2010-01-01

    Full Text Available William Rothstein’s article “National metrical types in music of the eighteenth and early nineteenth centuries” (2008 proposes a distinction between the metrical habits of 18th and early 19th century German music and those of Italian and French music of that period. Based on theoretical treatises and compositional practice, he outlines these national metrical types and discusses the characteristics of each type. This paper presents the results of a study designed to determine whether, and to what degree, Rothstein’s characterizations of national metrical types are present in 19th century French and German art song. Studying metrical habits in this genre may provide a lens into changing metrical conceptions of 19th century theorists and composers, as well as to the metrical habits and compositional style of individual 19th century French and German art song composers.

  2. qPMS7: a fast algorithm for finding (ℓ, d-motifs in DNA and protein sequences.

    Directory of Open Access Journals (Sweden)

    Hieu Dinh

    Full Text Available Detection of rare events happening in a set of DNA/protein sequences could lead to new biological discoveries. One kind of such rare events is the presence of patterns called motifs in DNA/protein sequences. Finding motifs is a challenging problem since the general version of motif search has been proven to be intractable. Motifs discovery is an important problem in biology. For example, it is useful in the detection of transcription factor binding sites and transcriptional regulatory elements that are very crucial in understanding gene function, human disease, drug design, etc. Many versions of the motif search problem have been proposed in the literature. One such is the (ℓ, d-motif search (or Planted Motif Search (PMS. A generalized version of the PMS problem, namely, Quorum Planted Motif Search (qPMS, is shown to accurately model motifs in real data. However, solving the qPMS problem is an extremely difficult task because a special case of it, the PMS Problem, is already NP-hard, which means that any algorithm solving it can be expected to take exponential time in the worse case scenario. In this paper, we propose a novel algorithm named qPMS7 that tackles the qPMS problem on real data as well as challenging instances. Experimental results show that our Algorithm qPMS7 is on an average 5 times faster than the state-of-art algorithm. The executable program of Algorithm qPMS7 is freely available on the web at http://pms.engr.uconn.edu/downloads/qPMS7.zip. Our online motif discovery tools that use Algorithm qPMS7 are freely available at http://pms.engr.uconn.edu or http://motifsearch.com.

  3. Not Just Wanna Have Fun: Teaching Listening Skills with Songs

    Directory of Open Access Journals (Sweden)

    Amalia Qistina Abdullah

    2013-07-01

    Full Text Available Teaching listening skills is very challenging to ESL teachers. It involves active participation from both teachers and students to ensure the objectives of teaching listening skills can be achieved. Hence, this presentation provides interesting and exciting strategies to teach listening skills using selected songs.  It is hoped that this would motivate ESL teachers to apply and adapt these strategies in their English language classrooms.

  4. Bowhead whale songs sung by females in Disko Bay, Greenland

    DEFF Research Database (Denmark)

    Tervo, Outi; Christoffersen, Mads; FØrasier, Timothy

    2011-01-01

    , and more rarely mate attraction. In the North Atlantic right whale, Eubalaena glacialis, a closely related species to the bowhead whale, the female produces simple calls during sexual interactions that attract other males to mating groups. We suggest that our results may indicate that the elaborate songs...... of female bowhead whales may function for mate attraction and represent a novel example of partial courtship role reversal in mammals....

  5. GENDER ROLES IN PAKISTANI-URDU WEDDING SONGS

    OpenAIRE

    Syeda Bushra Zaidi

    2016-01-01

    This qualitative study of Pakistani-Urdu wedding songs allows a closer look at the gender situation, and towards the understanding of the process of construction and perpetuation of gender-based stereotypes. However, the major concern of this study is to understand the portrayal of each gender along with the question that does such portrayal underlines the traditional gender roles and gender inequality. Taking a discourse analysis perspective, this study analyzes textu...

  6. Highly scalable Ab initio genomic motif identification

    KAUST Repository

    Marchand, Benoit; Bajic, Vladimir B.; Kaushik, Dinesh

    2011-01-01

    We present results of scaling an ab initio motif family identification system, Dragon Motif Finder (DMF), to 65,536 processor cores of IBM Blue Gene/P. DMF seeks groups of mutually similar polynucleotide patterns within a set of genomic sequences and builds various motif families from them. Such information is of relevance to many problems in life sciences. Prior attempts to scale such ab initio motif-finding algorithms achieved limited success. We solve the scalability issues using a combination of mixed-mode MPI-OpenMP parallel programming, master-slave work assignment, multi-level workload distribution, multi-level MPI collectives, and serial optimizations. While the scalability of our algorithm was excellent (94% parallel efficiency on 65,536 cores relative to 256 cores on a modest-size problem), the final speedup with respect to the original serial code exceeded 250,000 when serial optimizations are included. This enabled us to carry out many large-scale ab initio motiffinding simulations in a few hours while the original serial code would have needed decades of execution time. Copyright 2011 ACM.

  7. LDsplit: screening for cis-regulatory motifs stimulating meiotic recombination hotspots by analysis of DNA sequence polymorphisms.

    Science.gov (United States)

    Yang, Peng; Wu, Min; Guo, Jing; Kwoh, Chee Keong; Przytycka, Teresa M; Zheng, Jie

    2014-02-17

    As a fundamental genomic element, meiotic recombination hotspot plays important roles in life sciences. Thus uncovering its regulatory mechanisms has broad impact on biomedical research. Despite the recent identification of the zinc finger protein PRDM9 and its 13-mer binding motif as major regulators for meiotic recombination hotspots, other regulators remain to be discovered. Existing methods for finding DNA sequence motifs of recombination hotspots often rely on the enrichment of co-localizations between hotspots and short DNA patterns, which ignore the cross-individual variation of recombination rates and sequence polymorphisms in the population. Our objective in this paper is to capture signals encoded in genetic variations for the discovery of recombination-associated DNA motifs. Recently, an algorithm called "LDsplit" has been designed to detect the association between single nucleotide polymorphisms (SNPs) and proximal meiotic recombination hotspots. The association is measured by the difference of population recombination rates at a hotspot between two alleles of a candidate SNP. Here we present an open source software tool of LDsplit, with integrative data visualization for recombination hotspots and their proximal SNPs. Applying LDsplit on SNPs inside an established 7-mer motif bound by PRDM9 we observed that SNP alleles preserving the original motif tend to have higher recombination rates than the opposite alleles that disrupt the motif. Running on SNP windows around hotspots each containing an occurrence of the 7-mer motif, LDsplit is able to guide the established motif finding algorithm of MEME to recover the 7-mer motif. In contrast, without LDsplit the 7-mer motif could not be identified. LDsplit is a software tool for the discovery of cis-regulatory DNA sequence motifs stimulating meiotic recombination hotspots by screening and narrowing down to hotspot associated SNPs. It is the first computational method that utilizes the genetic variation of

  8. Songs and storytelling: bringing health messages to life in Uganda.

    Science.gov (United States)

    Silver, D

    2001-01-01

    In villages without doctors and hospitals in the remote eastern Ugandan district of Pallisa, traditional birth attendants and mothers are solving the most serious health problems through the teaching power of songs and stories. The village's rich oral tradition was enlisted as the principal means not only for transmitting these important health messages, but also for supporting their practice throughout the community. Utilizing existing community traditions such as songs and storytelling offers culturally appropriate ways of enhancing the communications component of the health care system to make it serve the poor majority in a readily comprehensible, credible, affordable, and accessible form. These non-formal active-learning methods are highly compatible with and promotive of the general principles of primary health care, especially for their empowering, participatory and sustainable qualities. It is only a natural extension for health educators to more fully employ the use of the time-honored oral traditions of songs and storytelling as a vehicle for communicating health messages. For students in the health professions, awareness of these proven principles for engaging people at the local levels will contribute to more effective training, strategic program design, and advocacy.

  9. Teaching English to Young Learners Through Indonesian - Translated Songs

    Science.gov (United States)

    Sukirmiyadi

    2018-01-01

    As an international language, English is taught and learnt by almost all of the people in the world. In Indonesia for example, English has been introduced since the learners are studying at the elementary school. Even many of the Kindergarten Schools too, have already introduced this language to their students. However, we cannot deny that teaching foreign language is not such an easy thing due to the fact thatmany of the learners are not capable of speaking English very well although they have been learning it for more than ten years (Elementary: 6 years, Junior and Senior High School: 6 years). In line with this problem, this study aims at providing a solution by offering one teaching technique which seems to make the learners (especially young learners) enjoy learning through singing songs (Kasihani, 1999).Furthermore, Phillips(1995) said that young learners really enjoyed learning and singing songs with highly motivating. Based on those two researches andin efforts to make it easier in English language learning, especially to young learners, the writer translated the very common and popular Indonesian kid songs into English. Thesetranslated songswere then used to teach the students of Kindergarten up to Elementary ones of the first and second grade. This meant that before a teacher started to teach, s/he had to translate the Indonesian kid songsat first into English.Due to its popularity and familiarity, it was expected that this teaching technique would be more effective and efficient to apply especially to young learners.

  10. Parallel motif extraction from very long sequences

    KAUST Repository

    Sahli, Majed

    2013-01-01

    Motifs are frequent patterns used to identify biological functionality in genomic sequences, periodicity in time series, or user trends in web logs. In contrast to a lot of existing work that focuses on collections of many short sequences, modern applications require mining of motifs in one very long sequence (i.e., in the order of several gigabytes). For this case, there exist statistical approaches that are fast but inaccurate; or combinatorial methods that are sound and complete. Unfortunately, existing combinatorial methods are serial and very slow. Consequently, they are limited to very short sequences (i.e., a few megabytes), small alphabets (typically 4 symbols for DNA sequences), and restricted types of motifs. This paper presents ACME, a combinatorial method for extracting motifs from a single very long sequence. ACME arranges the search space in contiguous blocks that take advantage of the cache hierarchy in modern architectures, and achieves almost an order of magnitude performance gain in serial execution. It also decomposes the search space in a smart way that allows scalability to thousands of processors with more than 90% speedup. ACME is the only method that: (i) scales to gigabyte-long sequences; (ii) handles large alphabets; (iii) supports interesting types of motifs with minimal additional cost; and (iv) is optimized for a variety of architectures such as multi-core systems, clusters in the cloud, and supercomputers. ACME reduces the extraction time for an exact-length query from 4 hours to 7 minutes on a typical workstation; handles 3 orders of magnitude longer sequences; and scales up to 16, 384 cores on a supercomputer. Copyright is held by the owner/author(s).

  11. DNA motif elucidation using belief propagation

    KAUST Repository

    Wong, Ka-Chun; Chan, Tak-Ming; Peng, Chengbin; Li, Yue; Zhang, Zhaolei

    2013-01-01

    Protein-binding microarray (PBM) is a high-throughout platform that can measure the DNA-binding preference of a protein in a comprehensive and unbiased manner. A typical PBM experiment can measure binding signal intensities of a protein to all the possible DNA k-mers (k = 8 ?10); such comprehensive binding affinity data usually need to be reduced and represented as motif models before they can be further analyzed and applied. Since proteins can often bind to DNA in multiple modes, one of the major challenges is to decompose the comprehensive affinity data into multimodal motif representations. Here, we describe a new algorithm that uses Hidden Markov Models (HMMs) and can derive precise and multimodal motifs using belief propagations. We describe an HMM-based approach using belief propagations (kmerHMM), which accepts and preprocesses PBM probe raw data into median-binding intensities of individual k-mers. The k-mers are ranked and aligned for training an HMM as the underlying motif representation. Multiple motifs are then extracted from the HMM using belief propagations. Comparisons of kmerHMM with other leading methods on several data sets demonstrated its effectiveness and uniqueness. Especially, it achieved the best performance on more than half of the data sets. In addition, the multiple binding modes derived by kmerHMM are biologically meaningful and will be useful in interpreting other genome-wide data such as those generated from ChIP-seq. The executables and source codes are available at the authors' websites: e.g. http://www.cs.toronto.edu/?wkc/kmerHMM. 2013 The Author(s).

  12. DNA motif elucidation using belief propagation.

    Science.gov (United States)

    Wong, Ka-Chun; Chan, Tak-Ming; Peng, Chengbin; Li, Yue; Zhang, Zhaolei

    2013-09-01

    Protein-binding microarray (PBM) is a high-throughout platform that can measure the DNA-binding preference of a protein in a comprehensive and unbiased manner. A typical PBM experiment can measure binding signal intensities of a protein to all the possible DNA k-mers (k=8∼10); such comprehensive binding affinity data usually need to be reduced and represented as motif models before they can be further analyzed and applied. Since proteins can often bind to DNA in multiple modes, one of the major challenges is to decompose the comprehensive affinity data into multimodal motif representations. Here, we describe a new algorithm that uses Hidden Markov Models (HMMs) and can derive precise and multimodal motifs using belief propagations. We describe an HMM-based approach using belief propagations (kmerHMM), which accepts and preprocesses PBM probe raw data into median-binding intensities of individual k-mers. The k-mers are ranked and aligned for training an HMM as the underlying motif representation. Multiple motifs are then extracted from the HMM using belief propagations. Comparisons of kmerHMM with other leading methods on several data sets demonstrated its effectiveness and uniqueness. Especially, it achieved the best performance on more than half of the data sets. In addition, the multiple binding modes derived by kmerHMM are biologically meaningful and will be useful in interpreting other genome-wide data such as those generated from ChIP-seq. The executables and source codes are available at the authors' websites: e.g. http://www.cs.toronto.edu/∼wkc/kmerHMM.

  13. DNA motif elucidation using belief propagation

    KAUST Repository

    Wong, Ka-Chun

    2013-06-29

    Protein-binding microarray (PBM) is a high-throughout platform that can measure the DNA-binding preference of a protein in a comprehensive and unbiased manner. A typical PBM experiment can measure binding signal intensities of a protein to all the possible DNA k-mers (k = 8 ?10); such comprehensive binding affinity data usually need to be reduced and represented as motif models before they can be further analyzed and applied. Since proteins can often bind to DNA in multiple modes, one of the major challenges is to decompose the comprehensive affinity data into multimodal motif representations. Here, we describe a new algorithm that uses Hidden Markov Models (HMMs) and can derive precise and multimodal motifs using belief propagations. We describe an HMM-based approach using belief propagations (kmerHMM), which accepts and preprocesses PBM probe raw data into median-binding intensities of individual k-mers. The k-mers are ranked and aligned for training an HMM as the underlying motif representation. Multiple motifs are then extracted from the HMM using belief propagations. Comparisons of kmerHMM with other leading methods on several data sets demonstrated its effectiveness and uniqueness. Especially, it achieved the best performance on more than half of the data sets. In addition, the multiple binding modes derived by kmerHMM are biologically meaningful and will be useful in interpreting other genome-wide data such as those generated from ChIP-seq. The executables and source codes are available at the authors\\' websites: e.g. http://www.cs.toronto.edu/?wkc/kmerHMM. 2013 The Author(s).

  14. Systematic discovery of regulatory motifs in Fusarium graminearum by comparing four Fusarium genomes

    Directory of Open Access Journals (Sweden)

    Kistler Corby

    2010-03-01

    Full Text Available Abstract Background Fusarium graminearum (Fg, a major fungal pathogen of cultivated cereals, is responsible for billions of dollars in agriculture losses. There is a growing interest in understanding the transcriptional regulation of this organism, especially the regulation of genes underlying its pathogenicity. The generation of whole genome sequence assemblies for Fg and three closely related Fusarium species provides a unique opportunity for such a study. Results Applying comparative genomics approaches, we developed a computational pipeline to systematically discover evolutionarily conserved regulatory motifs in the promoter, downstream and the intronic regions of Fg genes, based on the multiple alignments of sequenced Fusarium genomes. Using this method, we discovered 73 candidate regulatory motifs in the promoter regions. Nearly 30% of these motifs are highly enriched in promoter regions of Fg genes that are associated with a specific functional category. Through comparison to Saccharomyces cerevisiae (Sc and Schizosaccharomyces pombe (Sp, we observed conservation of transcription factors (TFs, their binding sites and the target genes regulated by these TFs related to pathways known to respond to stress conditions or phosphate metabolism. In addition, this study revealed 69 and 39 conserved motifs in the downstream regions and the intronic regions, respectively, of Fg genes. The top intronic motif is the splice donor site. For the downstream regions, we noticed an intriguing absence of the mammalian and Sc poly-adenylation signals among the list of conserved motifs. Conclusion This study provides the first comprehensive list of candidate regulatory motifs in Fg, and underscores the power of comparative genomics in revealing functional elements among related genomes. The conservation of regulatory pathways among the Fusarium genomes and the two yeast species reveals their functional significance, and provides new insights in their

  15. Molecular genetics and epigenetics of CACTA elements

    KAUST Repository

    Fedoroff, Nina V.

    2013-01-01

    The CACTA transposons, so named for a highly conserved motif at element ends, comprise one of the most abundant superfamilies of Class 2 (cut-and-paste) plant transposons. CACTA transposons characteristically include subterminal sequences of several

  16. CombiMotif: A new algorithm for network motifs discovery in protein-protein interaction networks

    Science.gov (United States)

    Luo, Jiawei; Li, Guanghui; Song, Dan; Liang, Cheng

    2014-12-01

    Discovering motifs in protein-protein interaction networks is becoming a current major challenge in computational biology, since the distribution of the number of network motifs can reveal significant systemic differences among species. However, this task can be computationally expensive because of the involvement of graph isomorphic detection. In this paper, we present a new algorithm (CombiMotif) that incorporates combinatorial techniques to count non-induced occurrences of subgraph topologies in the form of trees. The efficiency of our algorithm is demonstrated by comparing the obtained results with the current state-of-the art subgraph counting algorithms. We also show major differences between unicellular and multicellular organisms. The datasets and source code of CombiMotif are freely available upon request.

  17. Exposure to violent media: the effects of songs with violent lyrics on aggressive thoughts and feelings.

    Science.gov (United States)

    Anderson, Craig A; Carnagey, Nicholas L; Eubanks, Janie

    2003-05-01

    Five experiments examined effects of songs with violent lyrics on aggressive thoughts and hostile feelings. Experiments 1, 3, 4 and 5 demonstrated that college students who heard a violent song felt more hostile than those who heard a similar but nonviolent song. Experiments 2-5 demonstrated a similar increase in aggressive thoughts. These effects replicated across songs and song types (e.g., rock, humorous, nonhumorous). Experiments 3-5 also demonstrated that trait hostility was positively related to state hostility but did not moderate the song lyric effects. Discussion centers on the potential role of lyric content on aggression in short-term settings, relation to catharsis and other media violence domains, development of aggressive personality, differences between long-term and short-term effects, and possible mitigating factors.

  18. Vocal neighbour-mate discrimination in female great tits despite high song similarity

    DEFF Research Database (Denmark)

    Blumenrath, Sandra H.; Dabelsteen, Torben; Pedersen, Simon Boel

    2007-01-01

    Discrimination between conspecifics is important in mediating social interactions between several individuals in a network environment. In great tits, Parus major, females readily distinguish between the songs of their mate and those of a stranger. The high degree of song sharing among neighbouring...... males, however, raises the question of whether females are also able to perceive differences between songs shared by their mate and a neighbour. The great tit is a socially monogamous, hole-nesting species with biparental care. Pair bond maintenance and coordination of the pair's reproductive efforts...... are important, and the female's ability to recognize her mate's song should therefore be adaptive. In a neighbour-mate discrimination playback experiment, we presented 13 incubating great tit females situated inside nestboxes with a song of their mate and the same song type from a neighbour. Each female...

  19. Helping Students Understand Gene Regulation with Online Tools: A Review of MEME and Melina II, Motif Discovery Tools for Active Learning in Biology

    Directory of Open Access Journals (Sweden)

    David Treves

    2012-08-01

    Full Text Available Review of: MEME and Melina II, which are two free and easy-to-use online motif discovery tools that can be employed to actively engage students in learning about gene regulatory elements.

  20. Identification of helix capping and {beta}-turn motifs from NMR chemical shifts

    Energy Technology Data Exchange (ETDEWEB)

    Shen Yang; Bax, Ad, E-mail: bax@nih.gov [National Institutes of Health, Laboratory of Chemical Physics, National Institute of Diabetes and Digestive and Kidney Diseases (United States)

    2012-03-15

    We present an empirical method for identification of distinct structural motifs in proteins on the basis of experimentally determined backbone and {sup 13}C{sup {beta}} chemical shifts. Elements identified include the N-terminal and C-terminal helix capping motifs and five types of {beta}-turns: I, II, I Prime , II Prime and VIII. Using a database of proteins of known structure, the NMR chemical shifts, together with the PDB-extracted amino acid preference of the helix capping and {beta}-turn motifs are used as input data for training an artificial neural network algorithm, which outputs the statistical probability of finding each motif at any given position in the protein. The trained neural networks, contained in the MICS (motif identification from chemical shifts) program, also provide a confidence level for each of their predictions, and values ranging from ca 0.7-0.9 for the Matthews correlation coefficient of its predictions far exceed those attainable by sequence analysis. MICS is anticipated to be useful both in the conventional NMR structure determination process and for enhancing on-going efforts to determine protein structures solely on the basis of chemical shift information, where it can aid in identifying protein database fragments suitable for use in building such structures.

  1. Identification of helix capping and β-turn motifs from NMR chemical shifts

    International Nuclear Information System (INIS)

    Shen Yang; Bax, Ad

    2012-01-01

    We present an empirical method for identification of distinct structural motifs in proteins on the basis of experimentally determined backbone and 13 C β chemical shifts. Elements identified include the N-terminal and C-terminal helix capping motifs and five types of β-turns: I, II, I′, II′ and VIII. Using a database of proteins of known structure, the NMR chemical shifts, together with the PDB-extracted amino acid preference of the helix capping and β-turn motifs are used as input data for training an artificial neural network algorithm, which outputs the statistical probability of finding each motif at any given position in the protein. The trained neural networks, contained in the MICS (motif identification from chemical shifts) program, also provide a confidence level for each of their predictions, and values ranging from ca 0.7–0.9 for the Matthews correlation coefficient of its predictions far exceed those attainable by sequence analysis. MICS is anticipated to be useful both in the conventional NMR structure determination process and for enhancing on-going efforts to determine protein structures solely on the basis of chemical shift information, where it can aid in identifying protein database fragments suitable for use in building such structures.

  2. War songs and songs of war: the poetry in B minor by Fabrizio De André

    Directory of Open Access Journals (Sweden)

    Gleiton Lentz

    2010-11-01

    Full Text Available The 2nd half of last century, the Italian composer Fabrizio De André (1940-1999 occupied a prominent place in the history of Italian song and even the modern Italian poetry. His fans admire the moral courage and artistic coherence with which he, in the post-war Italian society, through his libertarian and pacifist songs, portrayed the world of the marginalized, the rebels and the prostitutes, and other characters on the margins of society, among those, the war combatant, hero of lost victories on the battlefield. Three of his songs are emblematic: La Ballata dell'eroe, La Guerra di Piero and Girotondo. Three poems that talk about war, death, and the figure of the combatant as an outcast of society, that kills him and then relegates him to oblivion, on behalf of the Fatherland. Exposing his provocative vision of post-war society by showing two videos of the composer is the purpose of this presentation.

  3. Batswana women's songs : vehicles for enculturation, continuity and change / by Edith Morongwa Dikotla

    OpenAIRE

    Dikotla, Edith Morongwa

    2007-01-01

    The research describes how the Batswma women use their songs as potential vehicles for cultural empowerment, continuity and change. The songs are regarded as a form of literature which is an integral part of culture and tribal life. From the traditional point of view, Batswana women participated in many rituals which had cultural significance. Through the songs women are able to teach culture to the younger generation, to maintain culture and its values, and also to change the ...

  4. Estradiol and song affect female zebra finch behavior independent of dopamine in the striatum

    OpenAIRE

    Svec, Lace A.; Lookingland, Keith J.; Wade, Juli

    2009-01-01

    Female songbirds display preferences for certain song characteristics, but the neural and hormonal mechanisms mediating these preferences are not fully clear. The present study sought to further explore the role of estradiol, as well as assess potential roles of dopaminergic systems, on behavioral responses to song. Adult female zebra finches were treated with estradiol and exposed to tutored or untutored song or silence. Behavior was quantified and neurochemistry of the nucleus accumbens and...

  5. Approaches to the mechanisms of song memorization and singing provide evidence for a procedural memory

    OpenAIRE

    Hultsch,Henrike; Todt,Dietmar

    2004-01-01

    There is growing evidence that, during song learning, birds do not only acquire 'what to sing' (the inventory of behavior), but also 'how to sing' (the singing program), including order-features of song sequencing. Common Nightingales Luscinia megarhynchos acquire such serial information by segmenting long strings of heard songs into smaller subsets or packages, by a process reminiscent of the chunking of information as a coding mechanism in short term memory. Here we report three tutoring ex...

  6. Multiple song features are related to paternal effort in common nightingales.

    Science.gov (United States)

    Bartsch, Conny; Weiss, Michael; Kipper, Silke

    2015-06-18

    Sexual ornamentation may be related to the degree of paternal care and the 'good-parent' model predicts that male secondary characters honestly advertise paternal investment. In most birds, males are involved in bringing up the young and successful reproduction highly depends on male contribution during breeding. In passerines, male song is indicative of male attributes and for few species it has been shown that song features also signal paternal investment to females. Males of nightingales Luscinia megarhynchos are famous for their elaborate singing but so far there is only little knowledge on the role of male song in intersexual communication, and it is unknown whether male song predicts male parenting abilities. Using RFID technology to record male feeding visits to the nest, we found that nightingale males substantially contribute to chick feeding. Also, we analyzed male nocturnal song with focus on song features that have been shown to signal male quality before. We found that several song features, namely measures of song complexity and song sequencing, were correlated with male feeding rates. Moreover, the combination of these song features had strong predictive power for male contribution to nestling feeding. Since male nightingales are involved in chick rearing, paternal investment might be a crucial variable for female mate choice in this species. Females may assess future paternal care on the basis of song features identified in our study and thus these features may have evolved to signal direct benefits to females. Additionally we underline the importance of multiple acoustic cues for female mating decisions especially in species with complex song such as the nightingale.

  7. Architecture for Automated Tagging and Clustering of Song Files According to Mood

    OpenAIRE

    Singh, Puneet; Kapoor, Ashutosh; Kaushik, Vishal; Maringanti, Hima Bindu

    2012-01-01

    Music is one of the basic human needs for recreation and entertainment. As song files are digitalized now a days, and digital libraries are expanding continuously, which makes it difficult to recall a song. Thus need of a new classification system other than genre is very obvious and mood based classification system serves the purpose very well. In this paper we will present a well-defined architecture to classify songs into different mood-based categories, using audio content analysis, affec...

  8. Synchronous seasonal change in fin whale song in the North Pacific.

    Directory of Open Access Journals (Sweden)

    Erin M Oleson

    Full Text Available Fin whale (Balaenoptera physalus song consists of down-swept pulses arranged into stereotypic sequences that can be characterized according to the interval between successive pulses. As in blue (B. musculus and humpback whales (Megaptera novaeangliae, these song sequences may be geographically distinct and may correlate with population boundaries in some regions. We measured inter-pulse intervals of fin whale songs within year-round acoustic datasets collected between 2000 and 2006 in three regions of the eastern North Pacific: Southern California, the Bering Sea, and Hawaii. A distinctive song type that was recorded in all three regions is characterized by singlet and doublet inter-pulse intervals that increase seasonally, then annually reset to the same shorter intervals at the beginning of each season. This song type was recorded in the Bering Sea and off Southern California from September through May and off Hawaii from December through April, with the song interval generally synchronized across all monitoring locations. The broad geographic and seasonal occurrence of this particular fin whale song type may represent a single population broadly distributed throughout the eastern Pacific with no clear seasonal migratory pattern. Previous studies attempting to infer population structure of fin whales in the North Pacific using synchronous individual song samples have been unsuccessful, likely because they did not account for the seasonal lengthening in song intervals observed here.

  9. Metabolic and respiratory costs of increasing song amplitude in zebra finches.

    Directory of Open Access Journals (Sweden)

    Sue Anne Zollinger

    Full Text Available Bird song is a widely used model in the study of animal communication and sexual selection, and several song features have been shown to reflect the quality of the singer. Recent studies have demonstrated that song amplitude may be an honest signal of current condition in males and that females prefer high amplitude songs. In addition, birds raise the amplitude of their songs to communicate in noisy environments. Although it is generally assumed that louder song should be more costly to produce, there has been little empirical evidence to support this assumption. We tested the assumption by measuring oxygen consumption and respiratory patterns in adult male zebra finches (Taeniopygia guttata singing at different amplitudes in different background noise conditions. As background noise levels increased, birds significantly increased the sound pressure level of their songs. We found that louder songs required significantly greater subsyringeal air sac pressure than quieter songs. Though increased pressure is probably achieved by increasing respiratory muscle activity, these increases did not correlate with measurable increases in oxygen consumption. In addition, we found that oxygen consumption increased in higher background noise, independent of singing behaviour. This observation supports previous research in mammals showing that high levels of environmental noise can induce physiological stress responses. While our study did not find that increasing vocal amplitude increased metabolic costs, further research is needed to determine whether there are other non-metabolic costs of singing louder or costs associated with chronic noise exposure.

  10. Zebra finch mates use their forebrain song system in unlearned call communication.

    Science.gov (United States)

    Ter Maat, Andries; Trost, Lisa; Sagunsky, Hannes; Seltmann, Susanne; Gahr, Manfred

    2014-01-01

    Unlearned calls are produced by all birds whereas learned songs are only found in three avian taxa, most notably in songbirds. The neural basis for song learning and production is formed by interconnected song nuclei: the song control system. In addition to song, zebra finches produce large numbers of soft, unlearned calls, among which "stack" calls are uttered frequently. To determine unequivocally the calls produced by each member of a group, we mounted miniature wireless microphones on each zebra finch. We find that group living paired males and females communicate using bilateral stack calling. To investigate the role of the song control system in call-based male female communication, we recorded the electrical activity in a premotor nucleus of the song control system in freely behaving male birds. The unique combination of acoustic monitoring together with wireless brain recording of individual zebra finches in groups shows that the neuronal activity of the song system correlates with the production of unlearned stack calls. The results suggest that the song system evolved from a brain circuit controlling simple unlearned calls to a system capable of producing acoustically rich, learned vocalizations.

  11. Long-time storage of song types in birds: evidence from interactive playbacks.

    OpenAIRE

    Geberzahn, Nicole; Hultsch, Henrike

    2003-01-01

    In studies of birdsong learning, imitation-based assays of stimulus memorization do not take into account that tutored song types may have been stored, but were not retrieved from memory. Such a 'silent' reservoir of song material could be used later in the bird's life, e.g. during vocal interactions. We examined this possibility in hand-reared nightingales during their second year. The males had been exposed to songs, both as fledglings and later, during their first full song period in an in...

  12. The song of the Brazilian population of Humpback Whale Megaptera novaeangliae, in the year 2000: individual song variations and possible implications

    Directory of Open Access Journals (Sweden)

    Arraut Eduardo M.

    2004-01-01

    Full Text Available The song of the Brazilian population of the Humpback Whale Megaptera novaeangliae was studied in its breeding and calving ground, the Abrolhos Bank, Bahia, Brazil, from July to November 2000. Aural and spectral analyses of digital recordings were completed for approximately 20 song cycles, totaling 5 hours of song from 10 different recording events. We identified 24 note types, organized in five themes. All songs presented the same themes and the order in which they were sung did not vary. We registered the appearance of a note type and the disappearance of a phrase ending, which indicate that the song changed as the season progressed. Moreover, we detected individual variation in the way singers performed certain complex note types. As songs are transmitted culturally, it is likely that singers have different abilities to compose and/or learn new notes. If, as it has been previously suggested, 'new' songs are preferred to 'old' ones, these more able singers will be sending out information about their learning abilities that could be used by other whales to decide whether or not to interact with them.

  13. μXRF analysis of decoration motifs on Majolica pottery

    International Nuclear Information System (INIS)

    Padilla Lavarez, Roman; Van Espen, Pierr M.; Janssens, K; Schalm, O.

    2001-01-01

    μXRF analysis of decoration motifs on Majolica pottery in fragments corresponding to several Majolica types was carried out using an spectrometer comprising a low power Mo X-ray tube and a elliptic-shape concentration lens with a 60 um spot. Both surface scanning and spot measurements were carried a out, allowing the qualitative identification of the inorganic pigments used for the surface painting decoration and the quantitative analysis of the main glaze composition. The absence of interference signal arising from the excitation on the underlying paste when analysing thin-lead glazing was evaluated, allowing ensuring the suitable of the analytical procedures. A distinction was found between different types of majolica by the composition of the lead tin glaze enamel and by the presence of other elements in the blue, black and orange decoration

  14. Dynamic motifs in socio-economic networks

    Science.gov (United States)

    Zhang, Xin; Shao, Shuai; Stanley, H. Eugene; Havlin, Shlomo

    2014-12-01

    Socio-economic networks are of central importance in economic life. We develop a method of identifying and studying motifs in socio-economic networks by focusing on “dynamic motifs,” i.e., evolutionary connection patterns that, because of “node acquaintances” in the network, occur much more frequently than random patterns. We examine two evolving bi-partite networks: i) the world-wide commercial ship chartering market and ii) the ship build-to-order market. We find similar dynamic motifs in both bipartite networks, even though they describe different economic activities. We also find that “influence” and “persistence” are strong factors in the interaction behavior of organizations. When two companies are doing business with the same customer, it is highly probable that another customer who currently only has business relationship with one of these two companies, will become customer of the second in the future. This is the effect of influence. Persistence means that companies with close business ties to customers tend to maintain their relationships over a long period of time.

  15. Female song rate and structure predict reproductive success in a socially monogamous bird.

    Directory of Open Access Journals (Sweden)

    Dianne Heather Brunton

    2016-03-01

    Full Text Available Bird song is commonly regarded as a male trait that has evolved through sexual selection. However, recent research has prompted a re-evaluation of this view by demonstrating that female song is an ancestral and phylogenetically widespread trait. Species with female song provide opportunities to study selective pressures and mechanisms specific to females within the wider context of social competition. We investigated the relationship between reproductive success and female song performance in the New Zealand bellbird (Anthornis melanura, a passerine resident year round in New Zealand temperate forests. We monitored breeding behavior and song over three years on Tiritiri Matangi Island. Female bellbirds contributed significantly more towards parental care than males (solely incubating young and provisioning chicks at more than twice the rate of males. Female song rate in the vicinity of the nest was higher than that of males during incubation and chick-rearing stages but similar during early-nesting and post-breeding stages. Using GLMs, we found that female song rates during both incubation and chick-rearing stages strongly predicted the number of fledged chicks. However, male song rate and male and female chick provisioning rates had no effect on fledging success. Two measures of female song complexity (number of syllable types and the number of transitions between different syllable types were also good predictors of breeding success (GLM on PC scores. In contrast, song duration, the total number of syllables, and the number of ‘stutter’ syllables per song were not correlated with fledging success. It is unclear why male song rate was not associated with reproductive success and we speculate that extra-pair paternity might play a role. While we have previously demonstrated that female bellbird song is important in intrasexual interactions, we clearly demonstrate here that female song predicts reproductive success. These results, with others

  16. New species of Simona Moulds, 2012 and Chelapsalta Moulds, 2012 cicadas (Cicadidae: Cicadettinae: Cicadettini) from Australia: comparative morphology, songs, behaviour and distributions.

    Science.gov (United States)

    Ewart, A; Popple, L W; Marshall, D C

    2015-08-20

    In 2012, Moulds established the morphologically similar cicada genera Simona and Chelapsalta, each with one Australian species (sancta Distant and puer Walker, respectively). In this paper, two new species are described within the genus Simona Moulds 2012, S. erema sp. nov. and S. retracta sp. nov., and one within the genus Chelapsalta Moulds 2012, C. myoporae sp. nov. The type species of Simona (female holotype), S. sancta (Distant, 1913), is redescribed based on a contemporary male, nominated a plesiotype, held in the Australian National Insect Collection. Melampsalta subgulosa Ashton 1914 is supported as a junior synonym of S. sancta. The species within the two genera of Simona and Chelapsalta are morphologically very similar. S. erema occurs widely through the arid regions of inland Australia, extending west from western Queensland through the Northern Territory, to central-western Western Australia, a linear distance of approximately 2200 km. S. retracta is known from a single semi-arid locality in southern inland Queensland. C. myoporae occurs widely through southeast, central and southwest Queensland, extending southwards into inland and western N.S.W. and southeastern South Australia. It tends to occur most commonly within vegetation associated with seasonal riverine floodplains, and in some areas of poorly drained and clay-rich soils. The calling songs of these three species, together with those of S. sancta and C. puer, are described. Detailed comparisons made of the songs of S. erema and C. myoporae, each from three widely separated locations, clearly exhibit structural consistency in their calling songs across their distributions. The Simona songs are complex and contain multiple elements; the species are very mobile and wary, and inhabit low dense shrubland. The songs of the two Chelapsalta species, both relatively sedentary in behaviour, in contrast consist of relatively uniform chirping and buzzing elements. It is suggested that, although the two

  17. Rethinking Eurovision Song Contest as a Clash of Cultures

    Directory of Open Access Journals (Sweden)

    Zeynep Merve ŞIVGIN

    2015-12-01

    Full Text Available Modern era’s understanding of culture overlooked culture, as a social and cultural analysis category as well as a way of life. This point of view has lost its validity and culture gained significance as an area where rulership and power struggle exists. Especially the privileged existence of popular culture; having an interdependence attachment to power relations in addition to an allowing structure for alternative discourses other than the official discourse is a cruicial asset. This article examines Eurovision Song Contest with its over 50 years of traditionaled history, as a noteworthy television program of popular culture. Despite often being considered as “kitsch”, the contest refers more than of an ordinary song competition. The artists who participate in the contest compete for the country they represent rather than an individual race which takes “national identity” more on stage. In this respect the contest has a stimulus effect on national consciousness. This alerted effect can clearly be seen on public debates just before, during and after the contest. It is claimed in this study that Turkey’s position in Eurovision Song Contest offers a view of the “cultural struggle” towards Western civilization since the beginning of the modernization process. In this framework this study primarily focuses on the relationship between identity and culture, followed by the role of popular culture in the construction of cultural identity. Afterwards the study tries to discover how does this contest became a tool of cultural struggle in Turkish society by analyzing the news and the discource of the news that took place in national print media.

  18. Simulation of SONGS unit 2/3 NSSS with RETACT

    International Nuclear Information System (INIS)

    Fakory, M.R.; Olmos, J.

    1991-01-01

    RETACT Code which is a major code for real time simulation of thermal-hydraulic phenomena has been enhanced and configured for the first time for Simulation of the Nuclear Steam Supply System (NSSS) of C-E designed PWRs at San Onofre Nuclear Generating Station. SONGS Unit 2/3 Simulator was upgraded for thermal-hydraulic and containment models as well as the instructor station. In this paper the simulator results for various transients and accidents were benchmarked against plant data, the comparison for some of the benchmarkings including steam generator level swell/shrink, and loss-of-coolant accident are presented

  19. Nostalgia and the emotional tone and content of song lyrics.

    Science.gov (United States)

    Batcho, Krystine Irene

    2007-01-01

    Emotion and topic were manipulated in original song lyrics. Participants completed Batcho's and Holbrook's nostalgia surveys and rated 6 sets of lyrics for happiness, sadness, anger, nostalgia, meaning, liking, and relevance. Nostalgic lyrics were characterized by bittersweet reverie, loss of the past, identity, and meaning. Contrary to theories linking nostalgia to pathology, participants who scored high on Batcho's measure of personal nostalgia preferred happy lyrics, found them more meaningful, and related more closely to them. Consistent with theories relating nostalgia to social connectedness, high-nostalgia respondents preferred other-directed to solitary themes. Historical nostalgia was associated with relating more closely to sad lyrics.

  20. Exploring Student Attitudes to the Refugee Crisis: Songs on Migration

    Directory of Open Access Journals (Sweden)

    Kirsten Hempkin

    2016-06-01

    Full Text Available The issue of migrants and refugees has occupied Europe for the last few months. Much of the discourse surrounding this issue has been overwhelmingly negative, lapsing at times into stereotype, prejudice and even hate speech. As language teachers at a humanities faculty, we have a responsibility to address this issue in the classroom, especially as classroom experience tells us that our students are prone to stereotypical thinking. The article presents a series of song-based activities intended for use in language development classes for future teachers and translators at the Faculty of Arts, University of Maribor.

  1. Crab Hole Mosquito Blues — The Song

    Centers for Disease Control (CDC) Podcasts

    2011-04-26

    This podcast is a song about a major epizoodemic of a serious human and equine disease written and performed by the MARU Health Angels Band. Band members: K.M. Johnson, T.E. Walton (Retired); D.F. Antczak (Cornell University); W.H. Dietz (CDC); and D.H. Martin (Louisiana State University Health Science Center).  Created: 4/26/2011 by National Center for Emerging Zoonotic and Infectious Diseases (NCEZID).   Date Released: 4/26/2011.

  2. Reconnaissance invariante d'objets 3-D et correlation SONG

    Science.gov (United States)

    Roy, Sebastien

    Cette these propose des solutions a deux problemes de la reconnaissance automatique de formes: la reconnaissance invariante d'objets tridimensionnels a partir d'images d'intensite et la reconnaissance robuste a la presence de bruit disjoint. Un systeme utilisant le balayage angulaire des images et un classificateur par trajectoires d'espace des caracteristiques permet d'obtenir la reconnaissance invariante d'objets tridimensionnels. La reconnaissance robuste a la presence de bruit disjoint est realisee au moyen de la correlation SONG. Nous avons realise la reconnaissance invariante aux translations, rotations et changements d'echelle d'objets tridimensionnels a partir d'images d'intensite segmentees. Nous utilisons le balayage angulaire et un classificateur a trajectoires d'espace des caracteris tiques. Afin d'obtenir l'invariance aux translations, le centre de balayage angulaire coincide avec le centre geometrique de l'image. Le balayage angulaire produit un vecteur de caracteristiques invariant aux changements d'echelle de l'image et il transforme en translations du signal les rotations autour d'un axe parallele a la ligne de visee. Le classificateur par trajectoires d'espace des caracteristiques represente une rotation autour d'un axe perpendiculaire a la ligne de visee par une courbe dans l'espace. La classification se fait par la mesure de la distance du vecteur de caracteristiques de l'image a reconnaitre aux trajectoires stockees dans l'espace. Nos resultats numeriques montrent un taux de classement atteignant 98% sur une banque d'images composee de 5 vehicules militaires. La correlation non-lineaire generalisee en tranches orthogonales (SONG) traite independamment les niveaux de gris presents dans une image. Elle somme les correlations lineaires des images binaires ayant le meme niveau de gris. Cette correlation est equivalente a compter le nombre de pixels situes aux memes positions relatives et ayant les memes intensites sur deux images. Nous presentons

  3. A new, morphologically cryptic bush-cricket discovered on the basis of its song in the Carpathian Mountains (Insecta, Orthoptera, Tettigoniidae

    Directory of Open Access Journals (Sweden)

    Ionuţ Ştefan Iorgu

    2017-06-01

    Full Text Available A new, morphologically cryptic species of phaneropterine bush-crickets is described from the grasslands of the Romanian Eastern Carpathians. Despite the morphological and acoustic similarities with the recently described Isophya nagyi Szövényi, Puskás & Orci, I. bucovinensis sp. n. is characterized by a peculiar male calling song, with faster syllable repetition rate (160–220 syllables per minute, at 22–27°C and less complex syllable structure (composed of only two elements instead of three observable in I. nagyi. The morphological description of the new species is supplemented with an oscillographic and spectrographic analysis of the male calling song and male–female pair-forming acoustic duet. An acoustic signal-based identification key is provided for all the presently known species of the Isophya camptoxypha species group, including the new species.

  4. CONTEMPORARY USAGE OF TRADITIONAL TURKISH MOTIFS IN PRODUCT DESIGNS

    Directory of Open Access Journals (Sweden)

    Tulay Gumuser

    2012-12-01

    Full Text Available The aim of this study is to identify the traditional Turkish motifs and its relations among present industrial designs. Traditional Turkish motifs played a very important role in 16th century onwards. The arts of the Ottoman Empire were used because of their symbolic meanings and unique styles. When we examine these motifs we encounter; Tiger Stripe, Three Spot (Çintemani, Rumi, Hatayi, Penç, Cloud, Crescent, Star, Crown, Hyacinth, Tulip and Carnation motifs. Nowadays, Turkish designers have begun to use these traditional Turkish motifs in their designs so as to create differences and awareness in the world design. The examples of these industrial designs, using the Turkish motifs, have survived and have Ottoman heritage and historical value. In this study, the Turkish motifs will be examined along with their focus on contemporary Turkish industrial designs used today.

  5. Aplikasi Ornamen Khas Maluku untuk Pengembangan Desain Motif Batik

    Directory of Open Access Journals (Sweden)

    Masiswo Masiswo

    2016-04-01

    Full Text Available ABSTRAKMaluku memiliki banyak ragam hias budaya warisan nilai leluhur berupa ornamen etnis yang merupakan kesenian dan keterampilan kerajinan. Hasil warisan tersebut sampai saat ini masih lestari hidup serta dapat dinikmati sebagai konsumsi rohani yang memuaskan manusia. Berkaitan dengan keberlangsungan nilai-nilai tradisi etnis yang berwujud pada ornamen-ornamen daerah Maluku, maka dikembangkan untuk kebutuhan manusia berupa motif batik pada kain. Pengembangan ornamen ini lebih menekankan pada representasi akan bentuk-bentuk ornamen yang diterapkan pada kerajinan batik berupa motif khas Maluku. Pengembangan alternatif desain motif batik dibuat tiga variasi yang bersumber dari ornamen khas Maluku dibuat prototipe produknya dan diuji ketahanan luntur warnanya. Hasil uji ketahanan luntur warna terhadap gosokan basah dari tiga prototipe produk berpredikat baik sekali terdapat pada “Motif Siwa” dan predikat baik pada motif “Siwa Talang” dan motif “Matahari Siwa Talang”.Kata kunci: desain, Maluku, motif batik, ornamenABSTRACTMaluku has much decorative ancestral cultural heritage value in the form of ornament ethnic arts and crafts skills. The result of the legacy is still sustainable living can be enjoyed as well as satisfying spiritual human consumption.Related to the sustainability of traditional values in the form of ethnic ornaments Maluku, it was developed for human needs in the form of batik cloth . The development of these ornaments will be more emphasis on the representation forms of ornamentation that is applied to a batik motif Maluku. Development of alternative design motif made three variations. The development of three alternative design motifs derived from the Maluku ornaments made and tested a prototype product color fastness. The test results of color fastness to wet rubbing of the three prototypes are excellent products predicated on the "Motif Siwa" and a good rating on the motif "Siwa Talang" and motif "Matahari Siwa

  6. Identity and functions of CxxC-derived motifs.

    Science.gov (United States)

    Fomenko, Dmitri E; Gladyshev, Vadim N

    2003-09-30

    Two cysteines separated by two other residues (the CxxC motif) are employed by many redox proteins for formation, isomerization, and reduction of disulfide bonds and for other redox functions. The place of the C-terminal cysteine in this motif may be occupied by serine (the CxxS motif), modifying the functional repertoire of redox proteins. Here we found that the CxxC motif may also give rise to a motif, in which the C-terminal cysteine is replaced with threonine (the CxxT motif). Moreover, in contrast to a view that the N-terminal cysteine in the CxxC motif always serves as a nucleophilic attacking group, this residue could also be replaced with threonine (the TxxC motif), serine (the SxxC motif), or other residues. In each of these CxxC-derived motifs, the presence of a downstream alpha-helix was strongly favored. A search for conserved CxxC-derived motif/helix patterns in four complete genomes representing bacteria, archaea, and eukaryotes identified known redox proteins and suggested possible redox functions for several additional proteins. Catalytic sites in peroxiredoxins were major representatives of the TxxC motif, whereas those in glutathione peroxidases represented the CxxT motif. Structural assessments indicated that threonines in these enzymes could stabilize catalytic thiolates, suggesting revisions to previously proposed catalytic triads. Each of the CxxC-derived motifs was also observed in natural selenium-containing proteins, in which selenocysteine was present in place of a catalytic cysteine.

  7. Algorithmic prediction of inter-song similarity in Western popular music

    NARCIS (Netherlands)

    Novello, A.; Par, van de S.L.J.D.E.; McKinney, M.F.; Kohlrausch, A.G.

    2013-01-01

    We investigate a method for automatic extraction of inter-song similarity for songs selected from several genres of Western popular music. The specific purpose of this approach is to evaluate the predictive power of different feature extraction sets based on human perception of music similarity and

  8. The Roles of Yoruba Songs on Pregnancy, Labour and Baby Care ...

    African Journals Online (AJOL)

    This paper therefore, examines the roles of Yoruba health related songs on pregnancy, labour, delivery and baby care during the health literacy classes in selected hospitals in southwestern Nigeria. Interviews, participant observation, cultural history and lyrical analysis of the recorded songs during such training were done.

  9. Structural design principles of complex bird songs: a network-based approach.

    Directory of Open Access Journals (Sweden)

    Kazutoshi Sasahara

    Full Text Available Bird songs are acoustic communication signals primarily used in male-male aggression and in male-female attraction. These are often monotonous patterns composed of a few phrases, yet some birds have extremely complex songs with a large phrase repertoire, organized in non-random fashion with discernible patterns. Since structure is typically associated with function, the structures of complex bird songs provide important clues to the evolution of animal communication systems. Here we propose an efficient network-based approach to explore structural design principles of complex bird songs, in which the song networks--transition relationships among different phrases and the related structural measures--are employed. We demonstrate how this approach works with an example using California Thrasher songs, which are sequences of highly varied phrases delivered in succession over several minutes. These songs display two distinct features: a large phrase repertoire with a 'small-world' architecture, in which subsets of phrases are highly grouped and linked with a short average path length; and a balanced transition diversity amongst phrases, in which deterministic and non-deterministic transition patterns are moderately mixed. We explore the robustness of this approach with variations in sample size and the amount of noise. Our approach enables a more quantitative study of global and local structural properties of complex bird songs than has been possible to date.

  10. Using Songs to Enhance L2 Vocabulary Acquisition in Preschool Children

    Science.gov (United States)

    Coyle, Yvette; Gómez Gracia, Remei

    2014-01-01

    This article looks at the effects of a teaching sequence of song-based activities on the L2 vocabulary acquisition of a group of five-year-old Spanish child EFL learners. Twenty-five preschool children received three 30-minute lessons organized around the presentation and practice of a well-known children's song. Vocabulary picture tests were…

  11. Content Analysis of Songs in Elementary Music Textbooks in Accordance with Values Education in Turkey

    Science.gov (United States)

    Yalçinkaya, Begüm

    2015-01-01

    The aim of this study is to determine which values are included in education songs in elementary school textbooks and the level of these values. This study, conducted using document analysis method, involved primary education music class textbooks. Education songs in textbooks were analyzed within the frame of 29 values determined based on…

  12. Humpback whale song and foraging behavior on an antarctic feeding ground.

    Directory of Open Access Journals (Sweden)

    Alison K Stimpert

    Full Text Available Reports of humpback whale (Megaptera novaeangliae song chorusing occurring outside the breeding grounds are becoming more common, but song structure and underwater behavior of individual singers on feeding grounds and migration routes remain unknown. Here, ten humpback whales in the Western Antarctic Peninsula were tagged in May 2010 with non-invasive, suction-cup attached tags to study foraging ecology and acoustic behavior. Background song was identified on all ten records, but additionally, acoustic records of two whales showed intense and continuous singing, with a level of organization and structure approaching that of typical breeding ground song. The songs, produced either by the tagged animals or close associates, shared phrase types and theme structure with one another, and some song bouts lasted close to an hour. Dive behavior of tagged animals during the time of sound production showed song occurring during periods of active diving, sometimes to depths greater than 100 m. One tag record also contained song in the presence of feeding lunges identified from the behavioral sensors, indicating that mating displays occur in areas worthy of foraging. These data show behavioral flexibility as the humpbacks manage competing needs to continue to feed and to prepare for the breeding season during late fall. This may also signify an ability to engage in breeding activities outside of the traditional, warm water breeding ground locations.

  13. Use of Songs to Promote Independence in Morning Greeting Routines for Young Children with Autism

    Science.gov (United States)

    Kern, Petra; Wolery, Mark; Aldridge, David

    2007-01-01

    This study evaluated the effects of individually composed songs on the independent behaviors of two young children with autism during the morning greeting/entry routine into their inclusive classrooms. A music therapist composed a song for each child related to the steps of the morning greeting routine and taught the children's teachers to sing…

  14. Singers' Recall for the Words and Melody of a New, Unaccompanied Song

    Science.gov (United States)

    Ginsborg, Jane; Sloboda, John A.

    2007-01-01

    The nature of the relationship between words and music in memory has been studied in a variety of ways, from investigations of listeners' recall for the words of songs stored in long-term memory to recall for novel information set to unfamiliar melodies. We asked singers to perform an unaccompanied song from memory following deliberate learning…

  15. Linguistic construct of songs of the Ham of Nigeria: A genre analysis ...

    African Journals Online (AJOL)

    The article examines the texts of songs of the Ham of Nigeria, a minority group, whose social links originate from kinship with a commonly held ancestry, to establish how such a relationship could be explicated in the content of the songs people from the society engage with. The study seeks to demonstrate the relationship ...

  16. Reversing song behavior phenotype: testosterone driven induction of singing and measures of song quality in adult male and female canaries (Serinus canaria)

    Science.gov (United States)

    Madison, Farrah N.; Rouse, Melvin L.; Balthazart, Jacques; Ball, Gregory F

    2014-01-01

    In songbirds, such as canaries (Serinus canaria), the song control circuit has been shown to undergo a remarkable change in morphology in response to exogenous testosterone (T). It is also well established that HVC, a telencephalic nucleus involved in song production, is significantly larger in males than in females. T regulates seasonal changes in HVC volume in males and exposure to exogenous T in adult females increases HVC volume and singing activity such that their song becomes more male-like in frequency and structure. However, whether there are sex differences in the ability of T to modulate changes in the song system and song behavior has not been investigated in canaries. In this study, we compared the effects of increasing doses of T on singing and song control nuclei volumes in adult male and female American Singer canaries exposed to identical environmental conditions. Males were castrated and all birds were placed on short days (8L:16D) for 8 weeks. Males and females were implanted either with a 2, 6 or 12 mm long Silastic™ implant filled with crystalline T or an empty 12 mm implant as control. Birds were then housed individually in sound attenuated chambers. Brains were collected from six birds from each group after 1 week or 3 weeks of treatment. Testosterone was not equally effective in increasing singing activity in both males and females. Changes in song quality and occurrence rate took place after a shorter latency in males than in females however, females did undergo marked changes in a number of measures of song behavior if given sufficient time. Males responded with an increase in HVC volume at all three doses. In females, T-induced changes in HVC volume only had limited amplitude and these volumes never reached male-typical levels a suggesting that there are sex differences in the neural substrate that responds to T. PMID:25260250

  17. The politics of power, pleasure and prayer in the Eurovision Song Contest

    Directory of Open Access Journals (Sweden)

    Bolman Filip V.

    2007-01-01

    Full Text Available Since the first annual Eurovision Song Contest in 1956, politics and popularity have intersected to influence the ways in which Eurovision songs have reflected the complex forms of European nationalism. With the Eurovision victory of Marija Šerifović’s ′Molitva′ at the 52nd Eurovision in Helsinki the politics of regionalism and nationalism fully enveloped Southeastern Europe, creating the impression that old and new European alignments, from Habsburg nostalgia to an emerging Balkan brotherhood, overwhelmed the criteria that would otherwise mean that the grand prix would go to the best song. Taking Marija Šerifović’s ′Molitva′ 2007 as a point of departure, this article examines the extremely complex set of networks that intersect at the Eurovision Song Contest and the national rituals and competitions that transform the power and pleasure driving European popular song in the twenty-first century.

  18. Convergent transcriptional specializations in the brains of humans and song-learning birds

    DEFF Research Database (Denmark)

    Pfenning, Andreas R.; Hara, Erina; Whitney, Osceola

    2014-01-01

    Song-learning birds and humans share independently evolved similarities in brain pathways for vocal learning that are essential for song and speech and are not found in most other species. Comparisons of brain transcriptomes of song-learning birds and humans relative to vocal nonlearners identified...... convergent gene expression specializations in specific song and speech brain regions of avian vocal learners and humans. The strongest shared profiles relate bird motor and striatal song-learning nuclei, respectively, with human laryngeal motor cortex and parts of the striatum that control speech production...... and learning. Most of the associated genes function in motor control and brain connectivity. Thus, convergent behavior and neural connectivity for a complex trait are associated with convergent specialized expression of multiple genes....

  19. Characterization of a Smad motif similar to Drosophila mad in the mouse Msx 1 promoter.

    Science.gov (United States)

    Alvarez Martinez, Cristina E; Binato, Renata; Gonzalez, Sayonara; Pereira, Monica; Robert, Benoit; Abdelhay, Eliana

    2002-03-01

    Mouse Msx 1 gene, orthologous of the Drosophila msh, is involved in several developmental processes. BMP family members are major proteins in the regulation of Msx 1 expression. BMP signaling activates Smad 1/5/8 proteins, which associate to Smad 4 before translocating to the nucleus. Analysis of Msx 1 promoter revealed the presence of three elements similar to the consensus established for Mad, the Smad 1 Drosophila counterpart. Notably, such an element was identified in an enhancer important for Msx 1 regulation. Gel shift analysis demonstrated that proteins from 13.5 dpc embryo associate to this enhancer. Remarkably, supershift assays showed that Smad proteins are present in the complex. Purified Smad 1 and 4 also bind to this fragment. We demonstrate that functional binding sites in this enhancer are confined to the Mad motif and flanking region. Our data suggest that this Mad motif may be functional in response to BMP signaling. ©2002 Elsevier Science (USA).

  20. Music Therapy by Proxy: Using Humanised Images in Song

    Directory of Open Access Journals (Sweden)

    Carol Chambers

    2013-07-01

    Full Text Available Developing awareness, exploration and expression of emotionally sensitive issues can be difficult for some clients in music therapy. They may find it hard to express emotion through improvised music and may turn instead to the perceived security of the repetition of known songs.This paper presents the results from a completed research PhD, a qualitative case study based on naturalistic clinical practice, which examined the song choices of one woman in a medium-secure forensic unit over the three-year course of her music therapy. A descriptive narrative account was subjected to analysis according to a modified form of therapeutic narrative analysis (Aldridge and Aldridge 2002, resulting in the abstraction of a series of generative metaphoric images, framed within a chronological series of events. Crucially, these images were found to be humanised figures, yet they were also emotionally decentred or depersonalised. When approached from the philosophical and methodological perspective of behaviourism, which views these as conditioned responses associating music with life experiences as part of a process of developing self-identity, such images can be seen to provide an unspoken voice for the client’s feelings to be expressed in a manner that is personally revealing, socially acceptable, culturally accessible and therapeutically constructive.I assert that using these third-person characters as a form of proxy facilitates mutual reference and experimentation, and places music firmly at the heart of a socially constructed process of music therapy.

  1. Song variation and environmental auditory masking in the grasshopper sparrow

    Science.gov (United States)

    Lohr, Bernard; Dooling, Robert J.; Gill, Douglas E.

    2004-05-01

    Some grassland bird species, in particular grasshopper sparrows (Ammodramus savannarum), sing songs with especially high mean frequencies (7.0-8.0 kHz). Acoustic interference is one potential explanation for the evolution of high frequency vocalizations, particularly in open habitats. We tested predictions from a model of effective auditory communication distances to understand the potential effects of vocal production and environmental auditory masking on vocal behavior and territoriality. Variation in the spectral structure of songs and the size and shape of territories was measured for grasshopper sparrows in typical grassland habitats. Median territory areas were 1629 m2 at a site in the center of the species range in Nebraska, and 1466 m2 at our study site in Maryland, with average territory diameters measuring 20.2 m. Species densities and sound pressure levels also were determined for stridulating insects and other noise sources in the habitat. Based on current models of effective communication distances, known noise levels, and information on hearing abilities, our results suggest that auditory sensitivity and environmental noise could be factors influencing the mean frequency and spatial dynamics of territorial behavior in grassland birds. [Work supported by NIH and the CRFRC.

  2. DEVELOPING PODCAST OF ENGLISH SONG AS MEDIA FOR ELT LISTENING

    Directory of Open Access Journals (Sweden)

    Amirudin Latif

    2015-10-01

    Full Text Available Abstract: Listening is one of the fundamental language skills.Based on the pre survey research, many students at Senior High School were not interested in listening course.This research tried to develop podcast of English song (PES as the media in order to help the teacher in the teaching of listening and make the students interested in listening course. The type of the reseacher is developmental research.The steps of this research are self evaluation, expert review and one-to-one, small group, and field test. The subjects of this research are the students of SMAN 03 Metro and SMK Muhammadiyah 03 Metro. The researcher collected the data by giving some questionnaires to the expert review and students to find out whether the media is applicable and suitable or not. The result showed that: first, most of the studentsfelt fun and enjoyable in the learning process of listening course. Second, PES media was applicable, the students were active, very enthusiastic, excited with PES media.   Key Words: English song, Listening media, Podcast.

  3. Investigating the Role of Pop Songs on Vocabulary Recall, Attitude and Retention of Iranian EFL Learners: The Case of Gender

    Science.gov (United States)

    Shakerian, Pouya; Rezaei, Omid; Murnani, Zeinab Toghyani; Moeinmanesh, Hamid

    2016-01-01

    Pop songs are, in fact, an ideal source for incidental vocabulary learning because teenagers often spend large amounts of their free time listening to music and in particular to pop songs. Employing an experimental approach, this study attempted to investigate the role of pop songs on vocabulary recall, attitude and retention of Iranian advanced…

  4. The effect of isolation, fragmentation, and population bottlenecks on song structure of a Hawaiian honeycreeper

    Science.gov (United States)

    Pang-Ching, Joshua M.; Paxton, Kristina L.; Paxton, Eben H.; Pack, Adam A.; Hart, Patrick J.

    2018-01-01

    Little is known about how important social behaviors such as song vary within and among populations for any of the endemic Hawaiian honeycreepers. Habitat loss and non‐native diseases (e.g., avian malaria) have resulted in isolation and fragmentation of Hawaiian honeycreepers within primarily high elevation forests. In this study, we examined how isolation of Hawai'i ‘amakihi (Chlorodrepanis virens) populations within a fragmented landscape influences acoustic variability in song. In the last decade, small, isolated populations of disease tolerant ‘amakihi have been found within low elevation forests, allowing us to record ‘amakihi songs across a large elevational gradient (10–1800 m) that parallels disease susceptibility on Hawai'i island. To understand underlying differences among populations, we examined the role of geographic distance, elevation, and habitat structure on acoustic characteristics of ‘amakihi songs. We found that the acoustic characteristics of ‘amakihi songs and song‐type repertoires varied most strongly across an elevational gradient. Differences in ‘amakihi song types were primarily driven by less complex songs (e.g., fewer frequency changes, shorter songs) of individuals recorded at low elevation sites compared to mid and high elevation populations. The reduced complexity of ‘amakihi songs at low elevation sites is most likely shaped by the effects of habitat fragmentation and a disease‐driven population bottleneck associated with avian malaria, and maintained through isolation, localized song learning and sharing, and cultural drift. These results highlight how a non‐native disease through its influence on population demographics may have also indirectly played a role in shaping the acoustic characteristics of a species.

  5. Neural substrates for semantic memory of familiar songs: is there an interface between lyrics and melodies?

    Directory of Open Access Journals (Sweden)

    Yoko Saito

    Full Text Available Findings on song perception and song production have increasingly suggested that common but partially distinct neural networks exist for processing lyrics and melody. However, the neural substrates of song recognition remain to be investigated. The purpose of this study was to examine the neural substrates involved in the accessing "song lexicon" as corresponding to a representational system that might provide links between the musical and phonological lexicons using positron emission tomography (PET. We exposed participants to auditory stimuli consisting of familiar and unfamiliar songs presented in three ways: sung lyrics (song, sung lyrics on a single pitch (lyrics, and the sung syllable 'la' on original pitches (melody. The auditory stimuli were designed to have equivalent familiarity to participants, and they were recorded at exactly the same tempo. Eleven right-handed nonmusicians participated in four conditions: three familiarity decision tasks using song, lyrics, and melody and a sound type decision task (control that was designed to engage perceptual and prelexical processing but not lexical processing. The contrasts (familiarity decision tasks versus control showed no common areas of activation between lyrics and melody. This result indicates that essentially separate neural networks exist in semantic memory for the verbal and melodic processing of familiar songs. Verbal lexical processing recruited the left fusiform gyrus and the left inferior occipital gyrus, whereas melodic lexical processing engaged the right middle temporal sulcus and the bilateral temporo-occipital cortices. Moreover, we found that song specifically activated the left posterior inferior temporal cortex, which may serve as an interface between verbal and musical representations in order to facilitate song recognition.

  6. Neural substrates for semantic memory of familiar songs: is there an interface between lyrics and melodies?

    Science.gov (United States)

    Saito, Yoko; Ishii, Kenji; Sakuma, Naoko; Kawasaki, Keiichi; Oda, Keiichi; Mizusawa, Hidehiro

    2012-01-01

    Findings on song perception and song production have increasingly suggested that common but partially distinct neural networks exist for processing lyrics and melody. However, the neural substrates of song recognition remain to be investigated. The purpose of this study was to examine the neural substrates involved in the accessing "song lexicon" as corresponding to a representational system that might provide links between the musical and phonological lexicons using positron emission tomography (PET). We exposed participants to auditory stimuli consisting of familiar and unfamiliar songs presented in three ways: sung lyrics (song), sung lyrics on a single pitch (lyrics), and the sung syllable 'la' on original pitches (melody). The auditory stimuli were designed to have equivalent familiarity to participants, and they were recorded at exactly the same tempo. Eleven right-handed nonmusicians participated in four conditions: three familiarity decision tasks using song, lyrics, and melody and a sound type decision task (control) that was designed to engage perceptual and prelexical processing but not lexical processing. The contrasts (familiarity decision tasks versus control) showed no common areas of activation between lyrics and melody. This result indicates that essentially separate neural networks exist in semantic memory for the verbal and melodic processing of familiar songs. Verbal lexical processing recruited the left fusiform gyrus and the left inferior occipital gyrus, whereas melodic lexical processing engaged the right middle temporal sulcus and the bilateral temporo-occipital cortices. Moreover, we found that song specifically activated the left posterior inferior temporal cortex, which may serve as an interface between verbal and musical representations in order to facilitate song recognition.

  7. UKIRAN KERAWANG ACEH GAYO SEBAGAI INSPIRASI PENCIPTAAN MOTIF BATIK KHAS GAYO

    Directory of Open Access Journals (Sweden)

    Irfa ina Rohana Salma

    2016-12-01

    Full Text Available ABSTRAK Industri batik mulai berkembang di Gayo, tetapi belum memiliki motif batik khas daerah. Oleh karena itu perlu diciptakan motif batik khas Gayo, dengan mengambil inspirasi dari ukiran yang terdapat pada rumah tradisional yang biasa disebut ukiran kerawang Gayo. Tujuan penciptaan seni ini adalah untuk menciptakan motif batik yang memiliki ciri khas Gayo. Metode yang digunakan yaitu eksplorasi ide, perancangan, dan perwujudan menjadi motif batik. Dalam kegiatan ini telah diciptakan enam motif batik khas Gayo yaitu: (1 Motif Ceplok Gayo; (2 Motif Gayo Tegak; (3 Motif Gayo Lurus; (4 Motif Parang Gayo; (5 Motif Gayo Lembut; dan (6 Motif Geometris Gayo. Hasil uji kesukaan terhadap motif kepada lima puluh responden menunjukkan bahwa Motif Ceplok Gayo paling banyak dipilih oleh responden yaitu sebesar 19%, sedangkan Motif Parang Gayo 18%, Motif Gayo Lembut 17%, Motif Geometris Gayo 17%, Motif Gayo Lurus 15% dan Motif Gayo Tegak 14%. Rata-rata motif yang dihasilkan mendapatkan apresiasi yang baik dari responden, sehingga semua motif layak diproduksi sebagai batik khas Gayo.Kata kunci: batik Gayo, Motif Ceplok Gayo, Motif Parang Gayo.ABSTRACTBatik industry began to develop in Gayo, but have not had a typical batik motif itself. Therefore, it is necessary to create batik motifs of Gayo, by taking inspiration from the carvings found in traditional houses commonly called kerawang Gayo. The purpose of this art is to create motifs those have a Gayo characteristic. The method used are the idea exploration, design, and motifs embodiment. In this activity has created six Gayo batik motifs, namely: (1 Motif Ceplok Gayo; (2 Motif Gayo Tegak; (3 Motif GayoLurus; (4 Motif Parang Gayo; (5 Motif Gayo Lembut; dan (6 Motif Geometris Gayo. The test results fondness of the motives to fifty respondents indicated that the Motif Ceplok Gayo most preferred by respondents ie 19%, while Motif Parang Gayo 18%, Motif Gayo Lembut 17%, Motif Geometris Gayo 17%, Motif Gayo

  8. Identification and characterization of a selenoprotein family containing a diselenide bond in a redox motif

    OpenAIRE

    Shchedrina, Valentina A.; Novoselov, Sergey V.; Malinouski, Mikalai Yu.; Gladyshev, Vadim N.

    2007-01-01

    Selenocysteine (Sec, U) insertion into proteins is directed by translational recoding of specific UGA codons located upstream of a stem-loop structure known as Sec insertion sequence (SECIS) element. Selenoproteins with known functions are oxidoreductases containing a single redox-active Sec in their active sites. In this work, we identified a family of selenoproteins, designated SelL, containing two Sec separated by two other residues to form a UxxU motif. SelL proteins show an unusual occur...

  9. RMOD: a tool for regulatory motif detection in signaling network.

    Directory of Open Access Journals (Sweden)

    Jinki Kim

    Full Text Available Regulatory motifs are patterns of activation and inhibition that appear repeatedly in various signaling networks and that show specific regulatory properties. However, the network structures of regulatory motifs are highly diverse and complex, rendering their identification difficult. Here, we present a RMOD, a web-based system for the identification of regulatory motifs and their properties in signaling networks. RMOD finds various network structures of regulatory motifs by compressing the signaling network and detecting the compressed forms of regulatory motifs. To apply it into a large-scale signaling network, it adopts a new subgraph search algorithm using a novel data structure called path-tree, which is a tree structure composed of isomorphic graphs of query regulatory motifs. This algorithm was evaluated using various sizes of signaling networks generated from the integration of various human signaling pathways and it showed that the speed and scalability of this algorithm outperforms those of other algorithms. RMOD includes interactive analysis and auxiliary tools that make it possible to manipulate the whole processes from building signaling network and query regulatory motifs to analyzing regulatory motifs with graphical illustration and summarized descriptions. As a result, RMOD provides an integrated view of the regulatory motifs and mechanism underlying their regulatory motif activities within the signaling network. RMOD is freely accessible online at the following URL: http://pks.kaist.ac.kr/rmod.

  10. The Book of Ruth and Song of Songs in the First Hebrew Translation of The Taming of the Shrew

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    Kahn Lily

    2017-12-01

    Full Text Available This article investigates the earliest Hebrew rendition of a Shakespearean comedy, Judah Elkind’s מוסר סוררה musar sorera ‘The Education of the Rebellious Woman’ (The Taming of the Shrew, which was translated directly from the English source text and published in Berditchev in 1892. Elkind’s translation is the only comedy among a small group of pioneering Shakespeare renditions conducted in late nineteenth-century Eastern Europe by adherents of the Jewish Enlightenment movement. It was rooted in a strongly ideological initiative to establish a modern European-style literature in Hebrew and reflecting Jewish cultural values at a time when the language was still primarily a written medium on the cusp of its large-scale revernacularisation in Palestine. The article examines the ways in which Elkind’s employment of a Judaising translation technique drawing heavily on romantic imagery from prominent biblical intertexts, particularly the Book of Ruth and the Song of Songs, affects the Petruchio and Katherine plotline in the target text. Elkind’s use of carefully selected biblical names for the main characters and his conscious insertion of biblical verses well known in Jewish tradition for their romantic connotations serve to transform Petruchio and Katherine into Peretz and Hoglah, the heroes of a distinctly Jewish love story which offers a unique and intriguing perspective on the translation of Shakespearean comedy.

  11. Dipeptide frequency/bias analysis identifies conserved sites of nonrandomness shared by cysteine-rich motifs.

    Science.gov (United States)

    Campion, S R; Ameen, A S; Lai, L; King, J M; Munzenmaier, T N

    2001-08-15

    This report describes the application of a simple computational tool, AAPAIR.TAB, for the systematic analysis of the cysteine-rich EGF, Sushi, and Laminin motif/sequence families at the two-amino acid level. Automated dipeptide frequency/bias analysis detects preferences in the distribution of amino acids in established protein families, by determining which "ordered dipeptides" occur most frequently in comprehensive motif-specific sequence data sets. Graphic display of the dipeptide frequency/bias data revealed family-specific preferences for certain dipeptides, but more importantly detected a shared preference for employment of the ordered dipeptides Gly-Tyr (GY) and Gly-Phe (GF) in all three protein families. The dipeptide Asn-Gly (NG) also exhibited high-frequency and bias in the EGF and Sushi motif families, whereas Asn-Thr (NT) was distinguished in the Laminin family. Evaluation of the distribution of dipeptides identified by frequency/bias analysis subsequently revealed the highly restricted localization of the G(F/Y) and N(G/T) sequence elements at two separate sites of extreme conservation in the consensus sequence of all three sequence families. The similar employment of the high-frequency/bias dipeptides in three distinct protein sequence families was further correlated with the concurrence of these shared molecular determinants at similar positions within the distinctive scaffolds of three structurally divergent, but similarly employed, motif modules.

  12. Promoter motifs required for c-mpl gene expression induced by thrombopoietin in CMK cells.

    Science.gov (United States)

    Sunohara, Masataka; Sato, Iwao; Morikawa, Shigeru

    2017-11-30

    Thrombopoietin (TPO) and its receptor, c-Mpl, are the central regulators of megakaryocyte development and platelet production and are also crucial to regulate megakaryocytopoiesis. TPO remarkably elevated c-mpl promoter activity, while the protein kinase C (PKC) inhibitors, GF109203, H7 and Calphostin C, clearly reduced the steady level of its promoter activity.  In the present study, motifs crucial for c-mpl promoter activity induced by TPO treatment have been analyzed using a human megakaryoblastic cell line, CMK. Destruction of the -107Sp1 and the -57Sp1 sites in the c-mpl promoter enhancer region resulted in decrease of the promoter activity by 53.1% and 64.4%, respectively, and destruction of -69Ets and -28Ets elements dramatically decreased the promoter activity by 96.4% and 87.8%, respectively, while mutation of -77GATA moderately reduced the activity by 31.4%. The result was in agreement with our previous report that showed the crucial motifs in the c-mpl promoter for the promoter activity induced by PMA-treatment. This indicates that TPO-induced activation of the c-mpl promoter activity is fully modulated by transcription through a PKC-dependent pathway and the two Sp1 and two Ets motifs are crucial for the activation of the c-mpl promoter activity rather than a GATA motif in the c-mpl promoter of CMK cells.

  13. Nuclear localization of the dehydrin OpsDHN1 is determined by histidine-rich motif

    Science.gov (United States)

    Hernández-Sánchez, Itzell E.; Maruri-López, Israel; Ferrando, Alejandro; Carbonell, Juan; Graether, Steffen P.; Jiménez-Bremont, Juan F.

    2015-01-01

    The cactus OpsDHN1 dehydrin belongs to a large family of disordered and highly hydrophilic proteins known as Late Embryogenesis Abundant (LEA) proteins, which accumulate during the late stages of embryogenesis and in response to abiotic stresses. Herein, we present the in vivo OpsDHN1 subcellular localization by N-terminal GFP translational fusion; our results revealed a cytoplasmic and nuclear localization of the GFP::OpsDHN1 protein in Nicotiana benthamiana epidermal cells. In addition, dimer assembly of OpsDHN1 in planta using a Bimolecular Fluorescence Complementation (BiFC) approach was demonstrated. In order to understand the in vivo role of the histidine-rich motif, the OpsDHN1-ΔHis version was produced and assayed for its subcellular localization and dimer capability by GFP fusion and BiFC assays, respectively. We found that deletion of the OpsDHN1 histidine-rich motif restricted its localization to cytoplasm, but did not affect dimer formation. In addition, the deletion of the S-segment in the OpsDHN1 protein affected its nuclear localization. Our data suggest that the deletion of histidine-rich motif and S-segment show similar effects, preventing OpsDHN1 from getting into the nucleus. Based on these results, the histidine-rich motif is proposed as a targeting element for OpsDHN1 nuclear localization. PMID:26442018

  14. Nuclear localization of the dehydrin OpsDHN1 is determined by histidine-rich motif

    Directory of Open Access Journals (Sweden)

    Itzell Euridice Hernández-Sánchez

    2015-09-01

    Full Text Available The cactus OpsDHN1 dehydrin belongs to a large family of disordered and highly hydrophilic proteins known as Late Embryogenesis Abundant (LEA proteins, which accumulate during the late stages of embryogenesis and in response to abiotic stresses. Herein, we present the in vivo OpsDHN1 subcellular localization by N-terminal GFP translational fusion; our results revealed a cytoplasmic and nuclear localization of the GFP::OpsDHN1 protein in Nicotiana benthamiana epidermal cells. In addition, dimer assembly of OpsDHN1 in planta using a Bimolecular Fluorescence Complementation (BiFC approach was demonstrated. In order to understand the in vivo role of the histidine-rich motif, the OpsDHN1-ΔHis version was produced and assayed for its subcellular localization and dimer capability by GFP fusion and BiFC assays, respectively. We found that deletion of the OpsDHN1 histidine-rich motif restricted its localization to cytoplasm, but did not affect dimer formation. In addition, the deletion of the S-segment in the OpsDHN1 protein affected its nuclear localization. Our data suggest that the deletion of histidine-rich motif and S-segment show similar effects, preventing OpsDHN1 from getting into the nucleus. Based on these results, the histidine rich motif is proposed as a targeting element for OpsDHN1 nuclear localization.

  15. ARCHETYPES AND MYTHOLOGICAL MOTIFS: JOHN UPDIKE’S LEGACY REVISITED

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    Loreta Ulvydienė

    2018-04-01

    Full Text Available John Updike is widely considered to be one of the greatest, one of the most popular and sometimes most controversial writers concerned with the American small town and middle-class materialism. A lot of literary critics and researchers observe that Updike’s finest work came from his exploration of ordinary America and from his use of elegant prose, rich with metaphor, to portray the public and private feelings of Americans, their daily rounds of life. In addition, discussing Updike’s individual works a lot of literary critics and researchers have observed the writer’s attempts to re-write myth in “the mythical age”1 of the twentieth century. Naturally enough, as the return to myth is assumed to be a certain feature of the Modernist movement, half a century later since Updike’s famous novel Centaur was penned, it is indispensable to re-examine the writer’s fictional intentions in the usage of myth. More importantly, it is needful to determine whether we can see the mythic elements and realistic details as a continuum or as the contrasted opposites in his so called “historical chronicles”. Updike’s novels and stories are filled with mythological motifs and character archetypes. Thus, the study aims at revisiting John Updike’s creation considering mythological elements and archetypal images of his heroes alongside with heroic masculinity, war, terrorism and American perfectionism.

  16. Structural motifs of pre-nucleation clusters.

    Science.gov (United States)

    Zhang, Y; Türkmen, I R; Wassermann, B; Erko, A; Rühl, E

    2013-10-07

    Structural motifs of pre-nucleation clusters prepared in single, optically levitated supersaturated aqueous aerosol microparticles containing CaBr2 as a model system are reported. Cluster formation is identified by means of X-ray absorption in the Br K-edge regime. The salt concentration beyond the saturation point is varied by controlling the humidity in the ambient atmosphere surrounding the 15-30 μm microdroplets. This leads to the formation of metastable supersaturated liquid particles. Distinct spectral shifts in near-edge spectra as a function of salt concentration are observed, in which the energy position of the Br K-edge is red-shifted by up to 7.1 ± 0.4 eV if the dilute solution is compared to the solid. The K-edge positions of supersaturated solutions are found between these limits. The changes in electronic structure are rationalized in terms of the formation of pre-nucleation clusters. This assumption is verified by spectral simulations using first-principle density functional theory and molecular dynamics calculations, in which structural motifs are considered, explaining the experimental results. These consist of solvated CaBr2 moieties, rather than building blocks forming calcium bromide hexahydrates, the crystal system that is formed by drying aqueous CaBr2 solutions.

  17. Promoter Motifs in NCLDVs: An Evolutionary Perspective

    Science.gov (United States)

    Oliveira, Graziele Pereira; Andrade, Ana Cláudia dos Santos Pereira; Rodrigues, Rodrigo Araújo Lima; Arantes, Thalita Souza; Boratto, Paulo Victor Miranda; Silva, Ludmila Karen dos Santos; Dornas, Fábio Pio; Trindade, Giliane de Souza; Drumond, Betânia Paiva; La Scola, Bernard; Kroon, Erna Geessien; Abrahão, Jônatas Santos

    2017-01-01

    For many years, gene expression in the three cellular domains has been studied in an attempt to discover sequences associated with the regulation of the transcription process. Some specific transcriptional features were described in viruses, although few studies have been devoted to understanding the evolutionary aspects related to the spread of promoter motifs through related viral families. The discovery of giant viruses and the proposition of the new viral order Megavirales that comprise a monophyletic group, named nucleo-cytoplasmic large DNA viruses (NCLDV), raised new questions in the field. Some putative promoter sequences have already been described for some NCLDV members, bringing new insights into the evolutionary history of these complex microorganisms. In this review, we summarize the main aspects of the transcription regulation process in the three domains of life, followed by a systematic description of what is currently known about promoter regions in several NCLDVs. We also discuss how the analysis of the promoter sequences could bring new ideas about the giant viruses’ evolution. Finally, considering a possible common ancestor for the NCLDV group, we discussed possible promoters’ evolutionary scenarios and propose the term “MEGA-box” to designate an ancestor promoter motif (‘TATATAAAATTGA’) that could be evolved gradually by nucleotides’ gain and loss and point mutations. PMID:28117683

  18. Promoter Motifs in NCLDVs: An Evolutionary Perspective

    Directory of Open Access Journals (Sweden)

    Graziele Pereira Oliveira

    2017-01-01

    Full Text Available For many years, gene expression in the three cellular domains has been studied in an attempt to discover sequences associated with the regulation of the transcription process. Some specific transcriptional features were described in viruses, although few studies have been devoted to understanding the evolutionary aspects related to the spread of promoter motifs through related viral families. The discovery of giant viruses and the proposition of the new viral order Megavirales that comprise a monophyletic group, named nucleo-cytoplasmic large DNA viruses (NCLDV, raised new questions in the field. Some putative promoter sequences have already been described for some NCLDV members, bringing new insights into the evolutionary history of these complex microorganisms. In this review, we summarize the main aspects of the transcription regulation process in the three domains of life, followed by a systematic description of what is currently known about promoter regions in several NCLDVs. We also discuss how the analysis of the promoter sequences could bring new ideas about the giant viruses’ evolution. Finally, considering a possible common ancestor for the NCLDV group, we discussed possible promoters’ evolutionary scenarios and propose the term “MEGA-box” to designate an ancestor promoter motif (‘TATATAAAATTGA’ that could be evolved gradually by nucleotides’ gain and loss and point mutations.

  19. Annual changes in the song of the bowhead whale Balaena mysticetus in Disko Bay, Western Greenland

    DEFF Research Database (Denmark)

    Miller, Lee

    presented by Outi at: Acoustic Communication by Animals, 2nd International Conference, August 12-15, 2008, Oregon State University, Corvallis, Oregon, USAAnnual changes in the song of the bowhead whale Balaena mysticetusin Disko Bay, Western GreenlandOuti Tervo and Mads F. Christoffersen, Arctic...... (n=659) and song notes (n=4394). All call types were present in the repertoire each year. Songs were composed of repetitive units referred here as song notes and were the most frequently documented type of vocalisation every year. Song notes had a stereotyped frequency contour and formed trains...

  20. Higher songs of city birds may not be an individual response to noise.

    Science.gov (United States)

    Zollinger, Sue Anne; Slater, Peter J B; Nemeth, Erwin; Brumm, Henrik

    2017-08-16

    It has been observed in many songbird species that populations in noisy urban areas sing with a higher minimum frequency than do matched populations in quieter, less developed areas. However, why and how this divergence occurs is not yet understood. We experimentally tested whether chronic noise exposure during vocal learning results in songs with higher minimum frequencies in great tits ( Parus major ), the first species for which a correlation between anthropogenic noise and song frequency was observed. We also tested vocal plasticity of adult great tits in response to changing background noise levels by measuring song frequency and amplitude as we changed noise conditions. We show that noise exposure during ontogeny did not result in songs with higher minimum frequencies. In addition, we found that adult birds did not make any frequency or song usage adjustments when their background noise conditions were changed after song crystallization. These results challenge the common view of vocal adjustments by city birds, as they suggest that either noise itself is not the causal force driving the divergence of song frequency between urban and forest populations, or that noise induces population-wide changes over a time scale of several generations rather than causing changes in individual behaviour. © 2017 The Author(s).

  1. The organisation of musical semantic memory: evidence from false memories for familiar songs.

    Science.gov (United States)

    Sherman, Susan M; Kennerley, Jo

    2014-01-01

    By adapting a well-known paradigm for studying memory for words-the Deese-Roediger-McDermott or DRM paradigm (Deese, 1959, Roediger & McDermott, 1995)-the two experiments reported here explore memory for song titles and song clips. Participants were presented with five song titles (Experiment 1a) or five 30-second song clips (Experiment 1b) for each of nine popular artists (e.g., Robbie Williams). The most popular song identified for each artist in a pilot task was omitted from the sets of titles/clips. Following a distractor task, participants were asked to write down as many of the songs as they could recall. They were also asked to return a week later and complete a second recall task. Participants falsely recalled a significant number of the related but non-presented songs in both experiments and this increased a week later, while correct recall for presented items decreased. The results are discussed in terms of theory for musical memory as well as in the context of providing a novel method for exploring the organisation of musical memory.

  2. TRANSLATION QUALITY OF JKT48‟S SONGS LYRICS: INDONESIAN VS ENGLISH VERSION

    Directory of Open Access Journals (Sweden)

    Pritha Anggiarima

    2017-04-01

    Full Text Available On expressing ourselves using songs, lyrics play a grat role, regardless the lyrics are a translated version from another language than our mother tongue. This research focuses on JKT48‘s songs lyrics, which are both Indonesian and English translation of Japanese songs sung by its sister group, AKB48. Many Indonesian listeners feel that when listening to JKT48‘s songs, they feel that the translation is weird, they cannot receive the meaning of the songs. This is because on translating AKB48‘s songs, the translator not only has to translate the words, but also to adapt the words‘ syllables with the melody. Also, Japanese language has a different structure with both Indonesian and English language, therefore, it needs more effort on understanding a translated Japanese songs. The researcher interviewed JKT48 fans in the largest JKT48 online fan forum, JKT48 no Fansu. She asked on which translation do the fans can catch the meaning better, Indonesian or English, as well as the reason why they think so. Also, she asked what suggestions do they give for the betterment of JKT48‘s translated lyrics.

  3. Approaches to the mechanisms of song memorization and singing provide evidence for a procedural memory

    Directory of Open Access Journals (Sweden)

    Hultsch Henrike

    2004-01-01

    Full Text Available There is growing evidence that, during song learning, birds do not only acquire 'what to sing' (the inventory of behavior, but also 'how to sing' (the singing program, including order-features of song sequencing. Common Nightingales Luscinia megarhynchos acquire such serial information by segmenting long strings of heard songs into smaller subsets or packages, by a process reminiscent of the chunking of information as a coding mechanism in short term memory. Here we report three tutoring experiments on nightingales that examined whether such 'chunking' was susceptible to experimental cueing. The experiments tested whether (1 'temporal phrasing' (silent intersong intervals spaced out at particular positions of a tutored string, or (2 'stimulus novelty' (groups of novel song-types added to a basic string, or (3 'pattern similarity' in the phonetic structure of songs (here: sharing of song initials would induce package boundaries (or chunking at the manipulated sequential positions. The results revealed cueing effects in experiments (1 and (2 but not in experiment (3. The finding that birds used temporal variables as cues for chunking does not require the assumption that package formation is a cognitive strategy. Rather, it points towards a mechanism of procedural memory operating in the song acquisition of birds.

  4. Approaches to the mechanisms of song memorization and singing provide evidence for a procedural memory.

    Science.gov (United States)

    Hultsch, Henrike; Todt, Dietmar

    2004-06-01

    There is growing evidence that, during song learning, birds do not only acquire 'what to sing' (the inventory of behavior), but also 'how to sing' (the singing program), including order-features of song sequencing. Common Nightingales Luscinia megarhynchos acquire such serial information by segmenting long strings of heard songs into smaller subsets or packages, by a process reminiscent of the chunking of information as a coding mechanism in short term memory. Here we report three tutoring experiments on nightingales that examined whether such 'chunking' was susceptible to experimental cueing. The experiments tested whether (1) 'temporal phrasing' (silent intersong intervals spaced out at particular positions of a tutored string), or (2) 'stimulus novelty' (groups of novel song-types added to a basic string), or (3) 'pattern similarity' in the phonetic structure of songs (here: sharing of song initials) would induce package boundaries (or chunking) at the manipulated sequential positions. The results revealed cueing effects in experiments (1) and (2) but not in experiment (3). The finding that birds used temporal variables as cues for chunking does not require the assumption that package formation is a cognitive strategy. Rather, it points towards a mechanism of procedural memory operating in the song acquisition of birds.

  5. Can rarefaction be used to estimate song repertoire size in birds?

    Directory of Open Access Journals (Sweden)

    Kathleen R. PESHEK, Daniel T. BLUMSTEIN

    2011-06-01

    Full Text Available Song repertoire size is the number of distinct syllables, phrases, or song types produced by an individual or population. Repertoire size estimation is particularly difficult for species that produce highly variable songs and those that produce many song types. Estimating repertoire size is important for ecological and evolutionary studies of speciation, studies of sexual selection, as well as studies of how species may adapt their songs to various acoustic environments. There are several methods to estimate repertoire size, however prior studies discovered that all but a full numerical count of song types might have substantial inaccuracies associated with them. We evaluated a somewhat novel approach to estimate repertoire size—rarefaction; a technique ecologists use to measure species diversity on individual and population levels. Using the syllables within American robins’ Turdus migratorius repertoire, we compared the most commonly used techniques of estimating repertoires to the results of a rarefaction analysis. American robins have elaborate and unique songs with few syllables shared between individuals, and there is no evidence that robins mimic their neighbors. Thus, they are an ideal system in which to compare techniques. We found that the rarefaction technique results resembled that of the numerical count, and were better than two alternative methods (behavioral accumulation curves, and capture-recapture to estimate syllable repertoire size. Future estimates of repertoire size, particularly in vocally complex species, may benefit from using rarefaction techniques when numerical counts are unable to be performed [Current Zoology 57 (3: 300–306, 2011].

  6. Characterizing Listener Engagement with Popular Songs Using Large-Scale Music Discovery Data

    Science.gov (United States)

    Kaneshiro, Blair; Ruan, Feng; Baker, Casey W.; Berger, Jonathan

    2017-01-01

    Music discovery in everyday situations has been facilitated in recent years by audio content recognition services such as Shazam. The widespread use of such services has produced a wealth of user data, specifying where and when a global audience takes action to learn more about music playing around them. Here, we analyze a large collection of Shazam queries of popular songs to study the relationship between the timing of queries and corresponding musical content. Our results reveal that the distribution of queries varies over the course of a song, and that salient musical events drive an increase in queries during a song. Furthermore, we find that the distribution of queries at the time of a song's release differs from the distribution following a song's peak and subsequent decline in popularity, possibly reflecting an evolution of user intent over the “life cycle” of a song. Finally, we derive insights into the data size needed to achieve consistent query distributions for individual songs. The combined findings of this study suggest that music discovery behavior, and other facets of the human experience of music, can be studied quantitatively using large-scale industrial data. PMID:28386241

  7. Characterizing Listener Engagement with Popular Songs Using Large-Scale Music Discovery Data.

    Science.gov (United States)

    Kaneshiro, Blair; Ruan, Feng; Baker, Casey W; Berger, Jonathan

    2017-01-01

    Music discovery in everyday situations has been facilitated in recent years by audio content recognition services such as Shazam. The widespread use of such services has produced a wealth of user data, specifying where and when a global audience takes action to learn more about music playing around them. Here, we analyze a large collection of Shazam queries of popular songs to study the relationship between the timing of queries and corresponding musical content. Our results reveal that the distribution of queries varies over the course of a song, and that salient musical events drive an increase in queries during a song. Furthermore, we find that the distribution of queries at the time of a song's release differs from the distribution following a song's peak and subsequent decline in popularity, possibly reflecting an evolution of user intent over the "life cycle" of a song. Finally, we derive insights into the data size needed to achieve consistent query distributions for individual songs. The combined findings of this study suggest that music discovery behavior, and other facets of the human experience of music, can be studied quantitatively using large-scale industrial data.

  8. Neural representation of calling songs and their behavioral relevance in the grasshopper auditory system

    Directory of Open Access Journals (Sweden)

    Gundula eMeckenhäuser

    2014-12-01

    Full Text Available Acoustic communication plays a key role for mate attraction in grasshoppers. Males use songs to advertise themselves to females. Females evaluate the song pattern, a repetitive structure of sound syllables separated by short pauses, to recognize a conspecific male and as proxy to its fitness. In their natural habitat females often receive songs with degraded temporal structure. Perturbations may, for example, result from the overlap with other songs. We studied the response behavior of females to songs that show different signal degradations. A perturbation of an otherwise attractive song at later positions in the syllable diminished the behavioral response, whereas the same perturbation at the onset of a syllable did not affect song attractiveness. We applied naïve Bayes classifiers to the spike trains of identified neurons in the auditory pathway to explore how sensory evidence about the acoustic stimulus and its attractiveness is represented in the neuronal responses. We find that populations of three or more neurons were sufficient to reliably decode the acoustic stimulus and to predict its behavioral relevance from the single-trial integrated firing rate. A simple model of decision making simulates the female response behavior. It computes for each syllable the likelihood for the presence of an attractive song pattern as evidenced by the population firing rate. Integration across syllables allows the likelihood to reach a decision threshold and to elicit the behavioral response. The close match between model performance and animal behavior shows that a spike rate code is sufficient to enable song pattern recognition.

  9. Song, Poetry and Images in Writing: Sami Literature

    Directory of Open Access Journals (Sweden)

    Harald Gaski

    2011-06-01

    Full Text Available The article is an overview of Sami literature, past and present, with a specific emphasis on the connection between tradition and innovation, in which literature is regarded in a broader sense than only limited to the written word. Thus the relationship between the traditional epic yoik songs and contemporary poetry is being dealt with, as is the multimedia approach that several Sami artists have chosen for their creative expression. It is almost more the rule than an exemption that Sami artists express themselves through the use of more than only one medium. Through the introduction to Sami literature, the reader also gets acquainted with the history and the culture of the Sami, who are the indigenous people of the northern regions of Scandinavia, Finland and the Kola peninsula in Russia.

  10. Moths are not silent, but whisper ultrasonic courtship songs

    DEFF Research Database (Denmark)

    Nakano, R; Takanashi, T; Fujii, T

    2009-01-01

    ) were recently shown to whisper extremely low-intensity ultrasonic courtship songs close to females. Since low sound levels will prevent eavesdropping by predators, parasites and conspecific rivals, we predicted low intensity ultrasound communication to be widespread among moths. Here we tested 13...... species of moths including members of the Noctuidae, Arctiidae, Geometridae and Crambidae. Males of nine species, 70%, produced broadband ultrasound close to females. Peak frequencies ranged from 38 to above 100 kHz. All sounds were of low intensity, 43-76 dB SPL at 1 cm [64+/-10 dB peSPL (mean +/- s......Ultrasonic hearing is widespread among moths, but very few moth species have been reported to produce ultrasounds for sexual communication. In those that do, the signals are intense and thus well matched for long distance communication. By contrast, males of the Asian corn borer moth (Crambidae...

  11. Using point-set compression to classify folk songs

    DEFF Research Database (Denmark)

    Meredith, David

    2014-01-01

    -neighbour algorithm and leave-one-out cross-validation to classify the 360 melodies into tune families. The classifications produced by the algorithms were compared with a ground-truth classification prepared by expert musicologists. Twelve of the thirteen compressors used in the experiment were based...... compared. The highest classification success rate of 77–84% was achieved by COSIATEC, followed by 60–64% for Forth’s algorithm and then 52–58% for SIATECCompress. When the NCDs were calculated using bzip2, the success rate was only 12.5%. The results demonstrate that the effectiveness of NCD for measuring...... similarity between folk-songs for classification purposes is highly dependent upon the actual compressor chosen. Furthermore, it seems that compressors based on finding maximal repeated patterns in point-set representations of music show more promise for NCD-based music classification than general...

  12. Lessons learned from the SONGS Unit 1 water hammer event

    International Nuclear Information System (INIS)

    Chiu, C.

    1987-01-01

    On November 21, 1985, a water hammer event occurred in horizontal feedwater line B at San Onofre Nuclear Generation Site (SONGS) Unit 1. The SONGS Unit 1 is a three-loop pressurized water reactor designed by Westinghouse Electric Corp. The event was initiated by a differential current trip on the bus of auxiliary transformer C. The root cause of the event was a simultaneous failure of five check valves in the feedwater system. Two of them are located downstream of the feedwater pump, and three of them are located further downstream and on the lines to the steam generators. The failure mechanism was determined to be flow-induced vibration, which caused repeated impact between the disk stud and the disk stop. The water hammer occurred in feedwater line B during the refilling of feedwater lines A, B, and C with auxiliary feedwater. The thermal-hydraulic process to initiate the water hammer and the reason that the water hammer only happened in line B have been fully investigated and explained. A root cause analysis after the event was prompted to answer the following two questions: (1) why did these five check valves fail at that time and not in the preceding 15 yr? (2) why did only these five check valves fail? The scope of the root cause analysis involves an investigation of the valve vibration characteristics, plant operation history, and the maintenance history of the valves. The paper answers these two questions, after a brief study of the vibration characteristics of a check valve

  13. Sexual dimorphism in song-induced ZENK expression in the medial striatum of juvenile zebra finches

    OpenAIRE

    Bailey, David J.; Wade, Juli

    2006-01-01

    In the brains of male zebra finches (Taeniopygia guttata), the nuclei that direct song learning and production are larger than the corresponding regions in females, who do not sing. The dimorphism in Area X of the medial striatum (MSt), an area important for song learning, is even more dramatic in that it is identifiable in males but not females by Nissl stain. In the present study, conspecific song, but not other auditory stimuli, induced expression of the immediate early gene ZENK in the MS...

  14. Transnationalism as a motif in family stories.

    Science.gov (United States)

    Stone, Elizabeth; Gomez, Erica; Hotzoglou, Despina; Lipnitsky, Jane Y

    2005-12-01

    Family stories have long been recognized as a vehicle for assessing components of a family's emotional and social life, including the degree to which an immigrant family has been willing to assimilate. Transnationalism, defined as living in one or more cultures and maintaining connections to both, is now increasingly common. A qualitative study of family stories in the family of those who appear completely "American" suggests that an affiliation with one's home country is nevertheless detectable in the stories via motifs such as (1) positively connotated home remedies, (2) continuing denigration of home country "enemies," (3) extensive knowledge of the home country history and politics, (4) praise of endogamy and negative assessment of exogamy, (5) superiority of home country to America, and (6) beauty of home country. Furthermore, an awareness of which model--assimilationist or transnational--governs a family's experience may help clarify a clinician's understanding of a family's strengths, vulnerabilities, and mode of framing their cultural experiences.

  15. Motif decomposition of the phosphotyrosine proteome reveals a new N-terminal binding motif for SHIP2

    DEFF Research Database (Denmark)

    Miller, Martin Lee; Hanke, S.; Hinsby, A. M.

    2008-01-01

    set of 481 unique phosphotyrosine (Tyr(P)) peptides by sequence similarity to known ligands of the Src homology 2 (SH2) and the phosphotyrosine binding (PTB) domains. From 20 clusters we extracted 16 known and four new interaction motifs. Using quantitative mass spectrometry we pulled down Tyr......(P)-specific binding partners for peptides corresponding to the extracted motifs. We confirmed numerous previously known interaction motifs and found 15 new interactions mediated by phosphosites not previously known to bind SH2 or PTB. Remarkably, a novel hydrophobic N-terminal motif ((L/V/I)(L/V/I)pY) was identified...

  16. The limits of de novo DNA motif discovery.

    Directory of Open Access Journals (Sweden)

    David Simcha

    Full Text Available A major challenge in molecular biology is reverse-engineering the cis-regulatory logic that plays a major role in the control of gene expression. This program includes searching through DNA sequences to identify "motifs" that serve as the binding sites for transcription factors or, more generally, are predictive of gene expression across cellular conditions. Several approaches have been proposed for de novo motif discovery-searching sequences without prior knowledge of binding sites or nucleotide patterns. However, unbiased validation is not straightforward. We consider two approaches to unbiased validation of discovered motifs: testing the statistical significance of a motif using a DNA "background" sequence model to represent the null hypothesis and measuring performance in predicting membership in gene clusters. We demonstrate that the background models typically used are "too null," resulting in overly optimistic assessments of significance, and argue that performance in predicting TF binding or expression patterns from DNA motifs should be assessed by held-out data, as in predictive learning. Applying this criterion to common motif discovery methods resulted in universally poor performance, although there is a marked improvement when motifs are statistically significant against real background sequences. Moreover, on synthetic data where "ground truth" is known, discriminative performance of all algorithms is far below the theoretical upper bound, with pronounced "over-fitting" in training. A key conclusion from this work is that the failure of de novo discovery approaches to accurately identify motifs is basically due to statistical intractability resulting from the fixed size of co-regulated gene clusters, and thus such failures do not necessarily provide evidence that unfound motifs are not active biologically. Consequently, the use of prior knowledge to enhance motif discovery is not just advantageous but necessary. An implementation of

  17. Probing structural changes of self assembled i-motif DNA

    KAUST Repository

    Lee, Iljoon; Patil, Sachin; Fhayli, Karim; Alsaiari, Shahad K.; Khashab, Niveen M.

    2015-01-01

    We report an i-motif structural probing system based on Thioflavin T (ThT) as a fluorescent sensor. This probe can discriminate the structural changes of RET and Rb i-motif sequences according to pH change. This journal is

  18. The identification of functional motifs in temporal gene expression analysis

    Directory of Open Access Journals (Sweden)

    Michael G. Surette

    2005-01-01

    Full Text Available The identification of transcription factor binding sites is essential to the understanding of the regulation of gene expression and the reconstruction of genetic regulatory networks. The in silico identification of cis-regulatory motifs is challenging due to sequence variability and lack of sufficient data to generate consensus motifs that are of quantitative or even qualitative predictive value. To determine functional motifs in gene expression, we propose a strategy to adopt false discovery rate (FDR and estimate motif effects to evaluate combinatorial analysis of motif candidates and temporal gene expression data. The method decreases the number of predicted motifs, which can then be confirmed by genetic analysis. To assess the method we used simulated motif/expression data to evaluate parameters. We applied this approach to experimental data for a group of iron responsive genes in Salmonella typhimurium 14028S. The method identified known and potentially new ferric-uptake regulator (Fur binding sites. In addition, we identified uncharacterized functional motif candidates that correlated with specific patterns of expression. A SAS code for the simulation and analysis gene expression data is available from the first author upon request.

  19. RNA recognition motif (RRM)-containing proteins in Bombyx mori

    African Journals Online (AJOL)

    STORAGESEVER

    2009-03-20

    Mar 20, 2009 ... Recognition Motif (RRM), sometimes referred to as. RNP1, is one of the first identified domains for RNA interaction. RRM is very common ..... Apart from the RRM motif, eIF3-S9 has a Trp-Asp. (WD) repeat domain, Poly (A) ...

  20. BlockLogo: Visualization of peptide and sequence motif conservation

    DEFF Research Database (Denmark)

    Olsen, Lars Rønn; Kudahl, Ulrich Johan; Simon, Christian

    2013-01-01

    BlockLogo is a web-server application for the visualization of protein and nucleotide fragments, continuous protein sequence motifs, and discontinuous sequence motifs using calculation of block entropy from multiple sequence alignments. The user input consists of a multiple sequence alignment, se...

  1. Fingerprint motifs of phytases | Fan | African Journal of Biotechnology

    African Journals Online (AJOL)

    Among the total of potential 173 phytases gained in 11 plant genomes through MAST, PAPhys are the major phytases, and HAPhys are the minor, and other phytase groups are not found in planta. Keywords: Phytase, fingerprint motif, multiple EM for motif elicitation (MEME), MAST African Journal of Biotechnology Vol.

  2. Super-transient scaling in time-delay autonomous Boolean network motifs

    Energy Technology Data Exchange (ETDEWEB)

    D' Huys, Otti, E-mail: otti.dhuys@phy.duke.edu; Haynes, Nicholas D. [Department of Physics, Duke University, Durham, North Carolina 27708 (United States); Lohmann, Johannes [Department of Physics, Duke University, Durham, North Carolina 27708 (United States); Institut für Theoretische Physik, Technische Universität Berlin, Hardenbergstraße 36, 10623 Berlin (Germany); Gauthier, Daniel J. [Department of Physics, Duke University, Durham, North Carolina 27708 (United States); Department of Physics, The Ohio State University, Columbus, Ohio 43210 (United States)

    2016-09-15

    Autonomous Boolean networks are commonly used to model the dynamics of gene regulatory networks and allow for the prediction of stable dynamical attractors. However, most models do not account for time delays along the network links and noise, which are crucial features of real biological systems. Concentrating on two paradigmatic motifs, the toggle switch and the repressilator, we develop an experimental testbed that explicitly includes both inter-node time delays and noise using digital logic elements on field-programmable gate arrays. We observe transients that last millions to billions of characteristic time scales and scale exponentially with the amount of time delays between nodes, a phenomenon known as super-transient scaling. We develop a hybrid model that includes time delays along network links and allows for stochastic variation in the delays. Using this model, we explain the observed super-transient scaling of both motifs and recreate the experimentally measured transient distributions.

  3. De Novo Discovery of Structured ncRNA Motifs in Genomic Sequences

    DEFF Research Database (Denmark)

    Ruzzo, Walter L; Gorodkin, Jan

    2014-01-01

    De novo discovery of "motifs" capturing the commonalities among related noncoding ncRNA structured RNAs is among the most difficult problems in computational biology. This chapter outlines the challenges presented by this problem, together with some approaches towards solving them, with an emphas...... on an approach based on the CMfinder CMfinder program as a case study. Applications to genomic screens for novel de novo structured ncRNA ncRNA s, including structured RNA elements in untranslated portions of protein-coding genes, are presented.......De novo discovery of "motifs" capturing the commonalities among related noncoding ncRNA structured RNAs is among the most difficult problems in computational biology. This chapter outlines the challenges presented by this problem, together with some approaches towards solving them, with an emphasis...

  4. Spain Was Not Living a Celebration. TVE And The Eurovision Song Contest During The Years Of Franco’s Dictatorship

    Directory of Open Access Journals (Sweden)

    Juan Francisco Gutiérrez Lozano

    2012-11-01

    Full Text Available Franco’s Dictatorship (1939-1975 used Spanish Television (TVE as a key element in the political propaganda of its apparent ‘openness’ during the 1960s. The propaganda co-existed with political interest in showing the technological development of the media and the international co-operation established with other European broadcasters, mainly in the EBU. In a country ruled by strong political censorship, the Eurovision Song Contest was used as a political tool to show the most amiable image of the non-democratic regime. Spain’s only two Eurovision wins (1968 and 1969 are still, 50 years on, two of the building blocks of the history of TVE and of televised entertainment and popular memory in Spain.

  5. [Professor Xu Fu-song's traditional Chinese medicine protocols for male diseases: A descriptive analysis].

    Science.gov (United States)

    Liu, Cheng-yong; Xu, Fu-song

    2015-04-01

    To analyze the efficacy and medication principles of Professor Xu Fu-songs traditional Chinese medicine (TCM) protocols for male diseases. We reviewed and descriptively analyzed the unpublished complete medical records of 100 male cases treated by Professor Xu Fu-song with his TCM protocols from 1978 to 1992. The 100 cases involved 32 male diseases, most of which were difficult and complicated cases. The drug compliance was 95%. Each prescription was made up of 14 traditional Chinese drugs on average. The cure rate was 32% , and the effective rate was 85%. Professor Xu Fu-song advanced and proved some new theories and therapeutic methods. Professor Xu Fu-song's TCM protocols can be applied to a wide range of male diseases, mostly complicated, and are characterized by accurate differentiation of symptoms and signs, high drug compliance, and excellent therapeutic efficacy.

  6. The Poetics of the Ancestor Songs of the Tz’utujil Maya of Guatemala

    Directory of Open Access Journals (Sweden)

    Linda O’Brien-Rothe

    2010-04-01

    Full Text Available This essay attempts to define the relationship between a song tradition that survives in the Mayan highlands of Guatemala, and 16th century poetic Mayan literature. This song tradition of Santiago Atitlán, Guatemala is slowly disappearing as the socio-cultural context in which it flourished changes. By comparing the poetics of the song texts (including their rhythmic structure, versification, and use of poetic devices such as assonance, alliteration and onomatopoeia to the poetics of the Popol Vuh, a K’iché Maya text probably copied from a manuscript that predates the Spanish invasion, a continuity is discovered that places the song texts squarely within the tradition of Mayan literature and suggests common origins.

  7. Revealing Originality of Song Works: An Analysis to the Copyright Law

    Directory of Open Access Journals (Sweden)

    Derezka Gunti Larasati

    2014-12-01

    Full Text Available The topic of this paper is to describe the defining criteria of originality of song works. The aspect of originality is important to make such work be protected by Copyright Law. In this research, the criteria to define originality are based on certain doctrines and/or theories of originality that may vary case by case. The use of such doctrines and/or theories are necessary, since the stipulations regarding originality in the Indonesian Copyright Act has not been considered suffice. With regard to the song works, the criteria of originality may be different from other works. Therefore, a comprehensive research on the characteristics of song as a work is also important. This research is a qualitative research with prescriptive design. The research depicts the use of certain doctrines and/or theories as supplementary provisions to the Copyright Law in defining the originality of songs, which have specific characteristics resulted from their author’s creations and intellectuals.

  8. The emotional importance of key: do Beatles songs written in different keys convey different emotional tones?

    Science.gov (United States)

    Whissel, R; Whissel, C

    2000-12-01

    Lyrics from 155 songs written by the Lennon-McCartney team were scored using the Dictionary of Affect in Language. Resultant scores (pleasantness, activation, and imagery of words) were compared across key signatures using one way analyses of variance. Words from songs written in minor keys were less pleasant and less active than those from songs written in major keys. Words from songs written in the key of F scored extremely low on all three measures. Lyrics from the keys of C, D, and G were relatively active in tone. Results from Dictionary scoring were compared with assignments of character to keys made more than one century ago and with current musicians' opinions.

  9. Music, emotion, and autobiographical memory: they're playing your song.

    Science.gov (United States)

    Schulkind, M D; Hennis, L K; Rubin, D C

    1999-11-01

    Very long-term memory for popular music was investigated. Older and younger adults listened to 20-sec excerpts of popular songs drawn from across the 20th century. The subjects gave emotionality and preference ratings and tried to name the title, artist, and year of popularity for each excerpt. They also performed a cued memory test for the lyrics. The older adults' emotionality ratings were highest for songs from their youth; they remembered more about these songs, as well. However, the stimuli failed to cue many autobiographical memories of specific events. Further analyses revealed that the older adults were less likely than the younger adults to retrieve multiple attributes of a song together (i.e., title and artist) and that there was a significant positive correlation between emotion and memory, especially for the older adults. These results have implications for research on long-term memory, as well as on the relationship between emotion and memory.

  10. "Our Song!" Nationalism in Folk Music Research and Revival in Socialist Czechoslovakia

    Czech Academy of Sciences Publication Activity Database

    Kratochvíl, Matěj

    2015-01-01

    Roč. 56, č. 4 (2015), s. 397-405 ISSN 1788-6244 Institutional support: RVO:68378076 Keywords : Czechoslovakia * folk music * folk song collections * revival * politics * nationalism * communism Subject RIV: AC - Archeology, Anthropology, Ethnology

  11. [Analysis of chemical constituents of volatile components from Jia Ga Song Tang by GC-MS].

    Science.gov (United States)

    Tan, Qing-long; Xiong, Tian-qin; Liao, Jia-yi; Yang, Tao; Zhao, Yu-min; Lin, Xi; Zhang, Cui-xian

    2014-10-01

    To analyze the chemical components of volatile components from Jia Ga Song Tang. The volatile oils were extracted by water steam distillation. The chemical components of essential oil were analyzed by GC-MS and quantitatively determined by a normalization method. 103 components were separated and 87 components were identified in the volatile oil of Zingiberis Rhizoma. 58 components were separated and 38 components were identified in the volatile oil of Myristicae Semen. 49 components were separated and 38 components were identified in the volatile oil of Amomi Rotundus Fructus. 89 components were separated and 63 components were identified in the volatile oil of Jia Ga Song Tang. Eucalyptol, β-phellandrene and other terpenes were the main compounds in the volatile oil of Jia Ga Song Tang. Changes in the kinds and content of volatile components can provide evidences for scientific and rational compatibility for Jia Ga Song Tang.

  12. THE SONG OF SONGS IN THE WORK OF LUIS DE LEON, SAN JUAN DE LA CRUZ Y JUAN GELMAN LANGUAGE, CHILDREN AND SPIRITUAL EXPERIENCE

    Directory of Open Access Journals (Sweden)

    Geneviève Fabry

    2015-04-01

    Full Text Available This paper aims to study the intertextual traces dell Song of Songs in the work of Luis de León, San Juan de la Cruz and Juan Gelman from a particular point of view: the resonance in the vernacular of small biblical book as founder dimension of an experience spiritual, emotional and literary time. Choosing our corpus may surprise but, for one, would like to emphasize the importance of two pivotal moments in the reception of the Song: the Spanish Renaissance, whose approach to the Bible is enriched by new currents philological and exegetical of which Luis de León is a sublime representative; the late twentieth century in which an insistent intertextuality observed with sanjuanista work in one direction often foreign to Christian spirituality, as in the case of the Argentine Juan Gelman.

  13. Identification of sequence motifs significantly associated with antisense activity

    Directory of Open Access Journals (Sweden)

    Peek Andrew S

    2007-06-01

    Full Text Available Abstract Background Predicting the suppression activity of antisense oligonucleotide sequences is the main goal of the rational design of nucleic acids. To create an effective predictive model, it is important to know what properties of an oligonucleotide sequence associate significantly with antisense activity. Also, for the model to be efficient we must know what properties do not associate significantly and can be omitted from the model. This paper will discuss the results of a randomization procedure to find motifs that associate significantly with either high or low antisense suppression activity, analysis of their properties, as well as the results of support vector machine modelling using these significant motifs as features. Results We discovered 155 motifs that associate significantly with high antisense suppression activity and 202 motifs that associate significantly with low suppression activity. The motifs range in length from 2 to 5 bases, contain several motifs that have been previously discovered as associating highly with antisense activity, and have thermodynamic properties consistent with previous work associating thermodynamic properties of sequences with their antisense activity. Statistical analysis revealed no correlation between a motif's position within an antisense sequence and that sequences antisense activity. Also, many significant motifs existed as subwords of other significant motifs. Support vector regression experiments indicated that the feature set of significant motifs increased correlation compared to all possible motifs as well as several subsets of the significant motifs. Conclusion The thermodynamic properties of the significantly associated motifs support existing data correlating the thermodynamic properties of the antisense oligonucleotide with antisense efficiency, reinforcing our hypothesis that antisense suppression is strongly associated with probe/target thermodynamics, as there are no enzymatic

  14. White-crowned sparrow males show immediate flexibility in song amplitude but not in song minimum frequency in response to changes in noise levels in the field.

    Science.gov (United States)

    Derryberry, Elizabeth P; Gentry, Katherine; Derryberry, Graham E; Phillips, Jennifer N; Danner, Raymond M; Danner, Julie E; Luther, David A

    2017-07-01

    The soundscape acts as a selective agent on organisms that use acoustic signals to communicate. A number of studies document variation in structure, amplitude, or timing of signal production in correspondence with environmental noise levels thus supporting the hypothesis that organisms are changing their signaling behaviors to avoid masking. The time scale at which organisms respond is of particular interest. Signal structure may evolve across generations through processes such as cultural or genetic transmission. Individuals may also change their behavior during development (ontogenetic change) or in real time (i.e., immediate flexibility). These are not mutually exclusive mechanisms, and all must be investigated to understand how organisms respond to selection pressures from the soundscape. Previous work on white-crowned sparrows ( Zonotrichia leucophrys ) found that males holding territories in louder areas tend to sing higher frequency songs and that both noise levels and song frequency have increased over time (30 years) in urban areas. These previous findings suggest that songs are changing across generations; however, it is not known if this species also exhibits immediate flexibility. Here, we conducted an exploratory, observational study to ask whether males change the minimum frequency of their song in response to immediate changes in noise levels. We also ask whether males sing louder, as increased minimum frequency may be physiologically linked to producing sound at higher amplitudes, in response to immediate changes in environmental noise. We found that territorial males adjust song amplitude but not minimum frequency in response to changes in environmental noise levels. Our results suggest that males do not show immediate flexibility in song minimum frequency, although experimental manipulations are needed to test this hypothesis further. Our work highlights the need to investigate multiple mechanisms of adaptive response to soundscapes.

  15. Moessbauer study of the Ru porcelain of Chinese Song Dynasty and Yuan Dynasty

    International Nuclear Information System (INIS)

    Gao Zhengyao; Chen Xiande

    1994-01-01

    The Moessbauer spectra from the glazes of the Song Dynasty and the Yuan Dynasty Ru porcelains and the imitative ancient Ru porcelain are compared and analyzed. It is determined that the original firing atmosphere of the Yuan Dynasty Ru porcelain was reductive. The firing temperature was 1250 ± 20 C. The original firing atmosphere of the Song Dynasty Ru porcelain was also reductive; the firing temperature was above 1200 C. The coloring mechanism of these glazes is discussed. (orig.)

  16. Reward and vocal production: song-associated place preference in songbirds.

    Science.gov (United States)

    Riters, Lauren V; Stevenson, Sharon A

    2012-05-15

    Vocal production is crucial for successful social interactions in multiple species. Reward can strongly influence behavior; however, the extent to which reward systems influence vocal behavior is unknown. In songbirds, singing occurs in different contexts. It can be spontaneous and undirected (e.g., song produced alone or as part of a large flock) or directed towards a conspecific (e.g., song used to attract a mate or influence a competitor). In this study, we developed a conditioned place preference paradigm to measure reward associated with different types of singing behavior in two songbird species. Both male zebra finches and European starlings developed a preference for a chamber associated with production of undirected song, suggesting that the production of undirected song is tightly coupled to intrinsic reward. In contrast, neither starlings nor zebra finches developed a place preference in association with directed song; however, male starlings singing directed song that failed to attract a female developed a place aversion. Unsuccessful contact calling behavior was also associated with a place aversion. These findings suggest that directed vocal behavior is not tightly linked to intrinsic reward but may be externally reinforced by social interactions. Data across two species thus support the hypothesis that the production of undirected but not directed song is tightly coupled to intrinsic reward. This study is the first to identify song-associated reward and suggests that reward associated with vocal production differs depending upon the context in which communication occurs. The findings have implications for understanding what motivates animals to engage in social behaviors and ways in which distinct reward mechanisms function to direct socially appropriate behaviors. Copyright © 2012 Elsevier Inc. All rights reserved.

  17. Music and dance make me feel alive: from Mandela's prison songs and dances to public policy.

    Science.gov (United States)

    Buis, Johann S

    2013-01-01

    How is it possible for song and dance to exist in political incarceration and manifest itself later as public policy responding to apartheid atrocities? Examining the body of songs, oral history accounts, and eye-witness reports provided by fellow-prisoners of Mandela on Robben Island prison, I uncover a psychological environment mediated through music and dance--within the confines of a political prison. This source of prison music-making by political prisoners in detention, provide us with the artistic expressions of revolutionary songs, parody songs, praise songs, laments, etc. These music genres reflect ontologies embedded in Mandela's juristic imagination. My framework for explaining these ontologies is a theoretical framework I call an aesthetic of function: internal ontologies that speak to the African cultural ground against which external ontologies are expressed in the jurisprudential redress to apartheid atrocities. Examining his external (jurisprudential) ontologies through song and dance, one realizes that the best way for him to have solved the unprecedented public redress of apartheid atrocities is evident in the songs he sang in Robben Island prison. Retribution could have been a logical solution for him. Instead, he turned to truth-telling and reconciliation as public policy. The Truth and Reconciliation Commission's unprecedented breaking of social and jurisprudential boundaries, the claim of agency for both victims and perpetrators, and public policy of South Africa's first democratically elected black president, lie deeply embedded in cultural practices he testified to in his autobiography, "The Long Walk to Freedom". These cultural practices in prison were singing and dancing. This paper complements the music-as-torture trope: here music in detention carries ontological agency. Musical evidence of stylistic features, text, and contextual analyses, and related literary criticism devices, expose Mandela's embedded internal and external

  18. Crammed signaling motifs in the T-cell receptor.

    Science.gov (United States)

    Borroto, Aldo; Abia, David; Alarcón, Balbino

    2014-09-01

    Although the T cell antigen receptor (TCR) is long known to contain multiple signaling subunits (CD3γ, CD3δ, CD3ɛ and CD3ζ), their role in signal transduction is still not well understood. The presence of at least one immunoreceptor tyrosine-based activation motif (ITAM) in each CD3 subunit has led to the idea that the multiplication of such elements essentially serves to amplify signals. However, the evolutionary conservation of non-ITAM sequences suggests that each CD3 subunit is likely to have specific non-redundant roles at some stage of development or in mature T cell function. The CD3ɛ subunit is paradigmatic because in a relatively short cytoplasmic sequence (∼55 amino acids) it contains several docking sites for proteins involved in intracellular trafficking and signaling, proteins whose relevance in T cell activation is slowly starting to be revealed. In this review we will summarize our current knowledge on the signaling effectors that bind directly to the TCR and we will propose a hierarchy in their response to TCR triggering. Copyright © 2014 Elsevier B.V. All rights reserved.

  19. Context-dependent links between song production and opioid-mediated analgesia in male European starlings (Sturnus vulgaris.

    Directory of Open Access Journals (Sweden)

    Cynthia A Kelm-Nelson

    Full Text Available Little is known about the neural mechanisms that ensure appropriate vocal behaviors within specific social contexts. Male songbirds produce spontaneous (undirected songs as well as female-directed courtship songs. Opioid neuropeptide activity in specific brain regions is rewarding, at least in mammals, and past studies suggest that the opioid met-enkephalin in such areas is more tightly linked to undirected than female-directed song. Recent data using a song-associated place preference paradigm further suggest that production of undirected but not directed song is tightly linked to intrinsic reward. Opioids have analgesic properties. Therefore, if production of undirected song is closely linked to opioid-mediated reward, the production of undirected but not directed song should be associated with analgesia. Consistent with this prediction, in male starlings we identified a positive correlation between analgesia (decreased reactivity to a hot water bath and undirected song (in non-breeding season condition males in affiliative flocks but not female-directed song (in breeding season condition males presented with females. When breeding condition males were divided according to social status, a negative correlation was found in subordinate males (i.e. males that failed to acquire a nest box. These data are consistent with the hypotheses 1 that the production of undirected song is facilitated or maintained by opioids (and/or other neuromodulators that also induce analgesia and 2 that production of female-directed song is not linked in the same way to release of the same neuromodulators. Results also demonstrate a link between analgesia and song in subordinate individuals lacking a nesting territory within the breeding season. Overall, the findings indicate that distinct neural mechanisms regulate communication in different social contexts and support the working hypothesis that undirected but not directed song is tightly linked to opioid release.

  20. Automatic annotation of protein motif function with Gene Ontology terms

    Directory of Open Access Journals (Sweden)

    Gopalakrishnan Vanathi

    2004-09-01

    Full Text Available Abstract Background Conserved protein sequence motifs are short stretches of amino acid sequence patterns that potentially encode the function of proteins. Several sequence pattern searching algorithms and programs exist foridentifying candidate protein motifs at the whole genome level. However, amuch needed and importanttask is to determine the functions of the newly identified protein motifs. The Gene Ontology (GO project is an endeavor to annotate the function of genes or protein sequences with terms from a dynamic, controlled vocabulary and these annotations serve well as a knowledge base. Results This paperpresents methods to mine the GO knowledge base and use the association between the GO terms assigned to a sequence and the motifs matched by the same sequence as evidence for predicting the functions of novel protein motifs automatically. The task of assigning GO terms to protein motifsis viewed as both a binary classification and information retrieval problem, where PROSITE motifs are used as samples for mode training and functional prediction. The mutual information of a motif and aGO term association isfound to be a very useful feature. We take advantageof the known motifs to train a logistic regression classifier, which allows us to combine mutual information with other frequency-based features and obtain a probability of correctassociation. The trained logistic regression model has intuitively meaningful and logically plausible parameter values, and performs very well empirically according to our evaluation criteria. Conclusions In this research, different methods for automatic annotation of protein motifs have been investigated. Empirical result demonstrated that the methods have a great potential for detecting and augmenting information about thefunctions of newly discovered candidate protein motifs.

  1. Interspecific variation in egg testosterone levels: implications for the evolution of bird song.

    Science.gov (United States)

    Garamszegi, L Z; Biard, C; Eens, M; Møller, A P; Saino, N

    2007-05-01

    Although interspecific variation in maternal effects via testosterone levels can be mediated by natural selection, little is known about the evolutionary consequences of egg testosterone for sexual selection. However, two nonexclusive evolutionary hypotheses predict an interspecific relationship between egg testosterone levels and the elaboration of sexual traits. First, maternal investment may be particularly enhanced in sexually selected species, which should generate a positive relationship. Secondly, high prenatal testosterone levels may constrain the development of sexual characters, which should result in a negative relationship. Here we investigated these hypotheses by exploring the relationship between yolk testosterone levels and features of song in a phylogenetic study of 36 passerine species. We found that song duration and syllable repertoire size were significantly negatively related to testosterone levels in the egg, even if potentially confounding factors were held constant. These relationships imply that high testosterone levels during early development of songs may be detrimental, thus supporting the developmental constraints hypothesis. By contrast, we found significant evidence that song-post exposure relative to the height of the vegetation is positively related to egg testosterone levels. These results support the hypothesis that high levels of maternal testosterone have evolved in species with intense sexual selection acting on the location of song-posts. We found nonsignificant effects for intersong interval and song type repertoire size, which may suggest that none of the above hypothesis apply to these traits, or they act simultaneously and have opposing effects.

  2. Transcending the Versification of Oraliture: Song-Text as Oral Performance among the Ilaje

    Directory of Open Access Journals (Sweden)

    N. Akingbe

    2013-12-01

    Full Text Available Oraliture is a terminology that is often employed in the description of the various genres of oral literature such as proverbs, legends, short stories, traditional songs and rhymes, song-poems, historical narratives traditional symbols, images, oral performance, myths and other traditional stylistic devices. All these devices constitute vibrant appurtenances of oral narrative performance in Africa. Oral narrative performance is invariably situated within the domain of social communication, which brings together the raconteur/performer and the audience towards the realisation of communal entertainment. While the narrator/performer, plays the leading role in an oral performance, the audience’s involvement and participation is realised through song, verbal/choral responses, gestures and, or instrumental/musical accompaniment. This oral practice usually take place at one time or the other in various African communities during the festival, ritual/religious procession which ranges from story- telling, recitation of poems, song text and dancing. This paper is essentially concerned with the illustration of the use of song- text, as oral performance among the Ilaje, a burgeoning coastal subethnic group, of the Yoruba race in the South Western Nigeria. The paper will further examine how patriotism, history, death and anti-social behaviours are evaluated through the use of songs among the Ilaje.

  3. Prediction of Potential Hit Song and Musical Genre Using Artificial Neural Networks

    Science.gov (United States)

    Monterola, Christopher; Abundo, Cheryl; Tugaff, Jeric; Venturina, Lorcel Ericka

    Accurately quantifying the goodness of music based on the seemingly subjective taste of the public is a multi-million industry. Recording companies can make sound decisions on which songs or artists to prioritize if accurate forecasting is achieved. We extract 56 single-valued musical features (e.g. pitch and tempo) from 380 Original Pilipino Music (OPM) songs (190 are hit songs) released from 2004 to 2006. Based on an effect size criterion which measures a variable's discriminating power, the 20 highest ranked features are fed to a classifier tasked to predict hit songs. We show that regardless of musical genre, a trained feed-forward neural network (NN) can predict potential hit songs with an average accuracy of ΦNN = 81%. The accuracy is about +20% higher than those of standard classifiers such as linear discriminant analysis (LDA, ΦLDA = 61%) and classification and regression trees (CART, ΦCART = 57%). Both LDA and CART are above the proportional chance criterion (PCC, ΦPCC = 50%) but are slightly below the suggested acceptable classifier requirement of 1.25*ΦPCC = 63%. Utilizing a similar procedure, we demonstrate that different genres (ballad, alternative rock or rock) of OPM songs can be automatically classified with near perfect accuracy using LDA or NN but only around 77% using CART.

  4. Trends in substance references in Australian top 20 songs between 1990 and 2015.

    Science.gov (United States)

    Pettigrew, Simone; Henriques, Isla; Farrier, Kaela

    2018-04-01

    This study examined references to alcohol and other drugs in top 20 songs over the last quarter of a century to explore the potential for popular music to constitute a barometer for changes occurring in youth consumption of alcohol and other substances. The online Australian Recording Industry Association charts resource was accessed to identify the top 20 songs for the period 1990 to 2015 inclusive. The lyrics of the identified songs were imported into NVivo11 for coding and analysis. Two coders analysed each song by line unit and a third coder assisted in resolving any coding discrepancies. Of the 508 discrete songs, 74 (15%) featured references to alcohol, tobacco and/or illicit drugs. Substance mentions increased over time such that the second half of the study period accounted for three-quarters of all references. The peak period for mentions was 2008-2012, with 2010 exhibiting an especially high prevalence rate for alcohol references. There was a marked decline in alcohol mentions between 2010 and 2013. The rate at which female artists referred to alcohol increased sharply until 2010 and then decreased. Patterns in substance mentions in top 20 songs in more recent years may reflect broader social trends that influence youth substance use. As such, monitoring music lyrics may assist researchers to better understand forces underlying patterns of youth substance use. © 2017 Australasian Professional Society on Alcohol and other Drugs.

  5. Common cues to emotion in the dynamic facial expressions of speech and song.

    Science.gov (United States)

    Livingstone, Steven R; Thompson, William F; Wanderley, Marcelo M; Palmer, Caroline

    2015-01-01

    Speech and song are universal forms of vocalization that may share aspects of emotional expression. Research has focused on parallels in acoustic features, overlooking facial cues to emotion. In three experiments, we compared moving facial expressions in speech and song. In Experiment 1, vocalists spoke and sang statements each with five emotions. Vocalists exhibited emotion-dependent movements of the eyebrows and lip corners that transcended speech-song differences. Vocalists' jaw movements were coupled to their acoustic intensity, exhibiting differences across emotion and speech-song. Vocalists' emotional movements extended beyond vocal sound to include large sustained expressions, suggesting a communicative function. In Experiment 2, viewers judged silent videos of vocalists' facial expressions prior to, during, and following vocalization. Emotional intentions were identified accurately for movements during and after vocalization, suggesting that these movements support the acoustic message. Experiment 3 compared emotional identification in voice-only, face-only, and face-and-voice recordings. Emotion judgements for voice-only singing were poorly identified, yet were accurate for all other conditions, confirming that facial expressions conveyed emotion more accurately than the voice in song, yet were equivalent in speech. Collectively, these findings highlight broad commonalities in the facial cues to emotion in speech and song, yet highlight differences in perception and acoustic-motor production.

  6. Seasonal and hormonal modulation of neurotransmitter systems in the song control circuit.

    Science.gov (United States)

    Ball, Gregory F; Balthazart, Jacques

    2010-03-01

    In the years following the discovery of the song system, it was realized that this specialized circuit controlling learned vocalizations in songbirds (a) constitutes a specific target for sex steroid hormone action and expresses androgen and (for some nuclei) estrogen receptors, (b) exhibits a chemical neuroanatomical pattern consisting in a differential expression of various neuropeptides and neurotransmitters receptors as compared to surrounding structures and (c) shows pronounced seasonal variations in volume and physiology based, at least in the case of HVC, on a seasonal change in neuron recruitment and survival. During the past 30 years numerous studies have investigated how seasonal changes, transduced largely but not exclusively through changes in sex steroid concentrations, affect singing frequency and quality by modulating the structure and activity of the song control circuit. These studies showed that testosterone or its metabolite estradiol, control seasonal variation in singing quality by a direct action on song control nuclei. These studies also gave rise to the hypothesis that the probability of song production in response to a given stimulus (i.e. its motivation) is controlled through effects on the medial preoptic area and on catecholaminergic cell groups that project to song control nuclei. Selective pharmacological manipulations confirmed that the noradrenergic system indeed plays a role in the control of singing behavior. More experimental work is, however, needed to identify specific genes related to neurotransmission that are regulated by steroids in functionally defined brain areas to enhance different aspects of song behavior. Copyright 2009. Published by Elsevier B.V.

  7. Blocking estradiol synthesis affects memory for songs in auditory forebrain of male zebra finches.

    Science.gov (United States)

    Yoder, Kathleen M; Lu, Kai; Vicario, David S

    2012-11-14

    Estradiol (E2) has recently been shown to modulate sensory processing in an auditory area of the songbird forebrain, the caudomedial nidopallium (NCM). When a bird hears conspecific song, E2 increases locally in NCM, where neurons express both the aromatase enzyme that synthesizes E2 from precursors and estrogen receptors. Auditory responses in NCM show a form of neuronal memory: repeated playback of the unique learned vocalizations of conspecific individuals induces long-lasting stimulus-specific adaptation of neural responses to each vocalization. To test the role of E2 in this auditory memory, we treated adult male zebra finches (n=16) with either the aromatase inhibitor fadrozole (FAD) or saline for 8 days. We then exposed them to 'training' songs and, 6 h later, recorded multiunit auditory responses with an array of 16 microelectrodes in NCM. Adaptation rates (a measure of stimulus-specific adaptation) to playbacks of training and novel songs were computed, using established methods, to provide a measure of neuronal memory. Recordings from the FAD-treated birds showed a significantly reduced memory for the training songs compared with saline-treated controls, whereas auditory processing for novel songs did not differ between treatment groups. In addition, FAD did not change the response bias in favor of conspecific over heterospecific song stimuli. Our results show that E2 depletion affects the neuronal memory for vocalizations in songbird NCM, and suggest that E2 plays a necessary role in auditory processing and memory for communication signals.

  8. Songs composed for use in music therapy: a survey of original songwriting practices of music therapists.

    Science.gov (United States)

    Jones, Jennifer D

    2006-01-01

    While researchers have documented the efficacy of clinical songwriting in music therapy, limited research has been conducted on songs composed by music therapists that address clinical goals. The purpose of this research was to examine the original songwriting practices of music therapists. Professional music therapists (N = 1,364) received a 14-question survey via email asking each to identify client populations and clinical goals addressed by original songs, their length of time in clinical practice, and specifics about their acquisition of songwriting skills. The data collected from 302 completed surveys revealed that respondents who used original songs were most likely to work with children and adolescents in schools or the developmental disability field and wrote songs in order to individualize treatment. Music therapists working with persons over 65 years of age in long term care or assisted living programs were the least likely to use original songs in clinical practice, opting for interventions utilizing the client's familiar music. Most music therapists found songwriting generally easy, but only 37% indicated that they acquired this skill during their undergraduate degree. Additional research on the clinical efficacy of original songs and therapist's compositional processes is needed to identify best practices models for strategic songwriting.

  9. Variation in social relationships relates to song preferences and EGR1 expression in a female songbird.

    Science.gov (United States)

    Schubloom, Hannah E; Woolley, Sarah C

    2016-09-01

    Social experiences can profoundly shape social behavior and the underlying neural circuits. Across species, the formation of enduring social relationships is associated with both neural and behavioral changes. However, it remains unclear how longer-term relationships between individuals influence brain and behavior. Here, we investigated how variation in social relationships relates to variation in female preferences for and neural responses to song in a pair-bonding songbird. We assessed variation in the interactions between individuals in male-female zebra finch pairs and found that female preferences for their mate's song were correlated with the degree of affiliation and amount of socially modulated singing, but not with the frequency of aggressive interactions. Moreover, variation in measures of pair quality and preference correlated with variation in the song-induced expression of EGR1, an immediate early gene related to neural activity and plasticity, in brain regions important for auditory processing and social behavior. For example, females with weaker preferences for their mate's song had greater EGR1 expression in the nucleus Taeniae, the avian homologue of the mammalian medial amygdala, in response to playback of their mate's courtship song. Our data indicate that the quality of social interactions within pairs relates to variation in song preferences and neural responses to ethologically relevant stimuli and lend insight into neural circuits sensitive to social information. © 2016 Wiley Periodicals, Inc. Develop Neurobiol 76: 1029-1040, 2016. © 2016 Wiley Periodicals, Inc.

  10. USING ENGLISH SONGS TO INCREASE EARLY STUDENTS’ VOCABULARY

    Directory of Open Access Journals (Sweden)

    Siti Fachraini

    2017-12-01

    Full Text Available Early childhood is a child in the age of 0-6 years. In this age, the development and growth of physical and mental of children develop rapidly. Meanwhile, the aspects developed in early childhood education are: religious and moral values, physical (consisting of gross motor, fine motor and physical health, cognitive (consisting of general knowledge and science, concepts, shapes, colors, sizes and patterns, number concepts, symbols of numbers and letters, language (consisting of accepting language, expressing language and script and emotional social. Language skills are one of the aspects which are developed at this age. Therefore, researchers intend to examine the level of mastery of the language of children through the song. This study aims to improve the vocabulary of early childhood, where this result affects the children’s ability to speak a foreign language in the future. This study is a Classroom Action Research, which aims to improve the ability of children English by using songs on the student group B TK Takrimah Tungkob Aceh Besar. This classroom action research is conducted in three cycles; each cycle consists of four stages: planning, action, observation, and reflection. Moreover, in analyzing the data, the researcher used descriptive method, that is analyzed data implemented since learning and developed during the process of reflection until process of report preparation. Data collection techniques used in this study include: interview, and observation of teaching and learning activities. Data analysis techniques consisted of three activities, namely data reduction, data presentation and conclusion drawing. The results showed that 64% of students can mentioned correctly alphabet in English in the first cycle. Furthermore, 80% of students have known and can properly name a few nouns in English in the second cycle. Furthermore, in the third cycle, 88% of students have been able to use the noun in the form of a simple sentence. Based

  11. Motif statistics and spike correlations in neuronal networks

    International Nuclear Information System (INIS)

    Hu, Yu; Shea-Brown, Eric; Trousdale, James; Josić, Krešimir

    2013-01-01

    Motifs are patterns of subgraphs of complex networks. We studied the impact of such patterns of connectivity on the level of correlated, or synchronized, spiking activity among pairs of cells in a recurrent network of integrate and fire neurons. For a range of network architectures, we find that the pairwise correlation coefficients, averaged across the network, can be closely approximated using only three statistics of network connectivity. These are the overall network connection probability and the frequencies of two second order motifs: diverging motifs, in which one cell provides input to two others, and chain motifs, in which two cells are connected via a third intermediary cell. Specifically, the prevalence of diverging and chain motifs tends to increase correlation. Our method is based on linear response theory, which enables us to express spiking statistics using linear algebra, and a resumming technique, which extrapolates from second order motifs to predict the overall effect of coupling on network correlation. Our motif-based results seek to isolate the effect of network architecture perturbatively from a known network state. (paper)

  12. Computational analyses of synergism in small molecular network motifs.

    Directory of Open Access Journals (Sweden)

    Yili Zhang

    2014-03-01

    Full Text Available Cellular functions and responses to stimuli are controlled by complex regulatory networks that comprise a large diversity of molecular components and their interactions. However, achieving an intuitive understanding of the dynamical properties and responses to stimuli of these networks is hampered by their large scale and complexity. To address this issue, analyses of regulatory networks often focus on reduced models that depict distinct, reoccurring connectivity patterns referred to as motifs. Previous modeling studies have begun to characterize the dynamics of small motifs, and to describe ways in which variations in parameters affect their responses to stimuli. The present study investigates how variations in pairs of parameters affect responses in a series of ten common network motifs, identifying concurrent variations that act synergistically (or antagonistically to alter the responses of the motifs to stimuli. Synergism (or antagonism was quantified using degrees of nonlinear blending and additive synergism. Simulations identified concurrent variations that maximized synergism, and examined the ways in which it was affected by stimulus protocols and the architecture of a motif. Only a subset of architectures exhibited synergism following paired changes in parameters. The approach was then applied to a model describing interlocked feedback loops governing the synthesis of the CREB1 and CREB2 transcription factors. The effects of motifs on synergism for this biologically realistic model were consistent with those for the abstract models of single motifs. These results have implications for the rational design of combination drug therapies with the potential for synergistic interactions.

  13. Triadic motifs in the dependence networks of virtual societies

    Science.gov (United States)

    Xie, Wen-Jie; Li, Ming-Xia; Jiang, Zhi-Qiang; Zhou, Wei-Xing

    2014-06-01

    In friendship networks, individuals have different numbers of friends, and the closeness or intimacy between an individual and her friends is heterogeneous. Using a statistical filtering method to identify relationships about who depends on whom, we construct dependence networks (which are directed) from weighted friendship networks of avatars in more than two hundred virtual societies of a massively multiplayer online role-playing game (MMORPG). We investigate the evolution of triadic motifs in dependence networks. Several metrics show that the virtual societies evolved through a transient stage in the first two to three weeks and reached a relatively stable stage. We find that the unidirectional loop motif (M9) is underrepresented and does not appear, open motifs are also underrepresented, while other close motifs are overrepresented. We also find that, for most motifs, the overall level difference of the three avatars in the same motif is significantly lower than average, whereas the sum of ranks is only slightly larger than average. Our findings show that avatars' social status plays an important role in the formation of triadic motifs.

  14. Triadic motifs in the dependence networks of virtual societies.

    Science.gov (United States)

    Xie, Wen-Jie; Li, Ming-Xia; Jiang, Zhi-Qiang; Zhou, Wei-Xing

    2014-06-10

    In friendship networks, individuals have different numbers of friends, and the closeness or intimacy between an individual and her friends is heterogeneous. Using a statistical filtering method to identify relationships about who depends on whom, we construct dependence networks (which are directed) from weighted friendship networks of avatars in more than two hundred virtual societies of a massively multiplayer online role-playing game (MMORPG). We investigate the evolution of triadic motifs in dependence networks. Several metrics show that the virtual societies evolved through a transient stage in the first two to three weeks and reached a relatively stable stage. We find that the unidirectional loop motif (M9) is underrepresented and does not appear, open motifs are also underrepresented, while other close motifs are overrepresented. We also find that, for most motifs, the overall level difference of the three avatars in the same motif is significantly lower than average, whereas the sum of ranks is only slightly larger than average. Our findings show that avatars' social status plays an important role in the formation of triadic motifs.

  15. Does a rival’s song elicit territorial defense in a tropical songbird, the Pied Bush Chat (Saxicola caprata?

    Directory of Open Access Journals (Sweden)

    Navjeevan Dadwal

    2017-05-01

    Full Text Available The purpose of bird song and the way in which it is delivered has been argued to be adapted mainly for territorial defense. We performed a field experiment with the combination of playbacks and a model to test how much song actually relates to increased territorial defense in the territorial tropical songbird, the Pied Bush Chat, during breeding season (Feb–May, 2015 at Haridwar, Himalayan Foothills, India. As expected, the results of the experiment indicated that song was the major cue used by territory holders to cope with rival intrusions. The song rate was particularly escalated during simulated territorial interactions when the model was presented with a playback song of conspecifics. Behaviors such as restlessness (perch change, the height of perch, and distance from the model appeared to be of relatively lesser importance. To our knowledge, no avian species from the Indian subcontinent has been studied to provide evidence that song can escalate aggressive response by a territory owner.

  16. Failure to detect seasonal changes in the song system nuclei of the black-capped chickadee (Poecile atricapillus).

    Science.gov (United States)

    Smulders, T V; Lisi, M D; Tricomi, E; Otter, K A; Chruszcz, B; Ratcliffe, L M; DeVoogd, T J

    2006-08-01

    Most temperate songbird species sing seasonally, and the brain areas involved in producing song (the song system) vary in size alongside the changes in behavior. Black-capped chickadees (Poecile atricapillus) also sing seasonally, and we find that there are changes in the stereotypy and the length of the fee-bee song from the nonbreeding to the breeding season. Yet despite these changes, we fail to find any evidence of seasonal changes in the song system. The song system of males is larger than that of females, as is typical in songbirds, but the ratio between the sexes is small compared to other species. We suggest three hypotheses to explain our failure to find seasonal variation in the chickadee song system.

  17. Evaluating theories of bird song learning: implications for future directions.

    Science.gov (United States)

    Margoliash, D

    2002-12-01

    Studies of birdsong learning have stimulated extensive hypotheses at all levels of behavioral and physiological organization. This hypothesis building is valuable for the field and is consistent with the remarkable range of issues that can be rigorously addressed in this system. The traditional instructional (template) theory of song learning has been challenged on multiple fronts, especially at a behavioral level by evidence consistent with selectional hypotheses. In this review I highlight the caveats associated with these theories to better define the limits of our knowledge and identify important experiments for the future. The sites and representational forms of the various conceptual entities posited by the template theory are unknown. The distinction between instruction and selection in vocal learning is not well established at a mechanistic level. There is as yet insufficient neurophysiological data to choose between competing mechanisms of error-driven learning and reinforcement learning. Both may obtain for vocal learning. The possible role of sleep in acoustic or procedural memory consolidation, while supported by some physiological observations, does not yet have support in the behavioral literature. The remarkable expansion of knowledge in the past 20 years and the recent development of new technologies for physiological and behavioral experiments should permit direct tests of these theories in the coming decade.

  18. How do "mute" cicadas produce their calling songs?

    Directory of Open Access Journals (Sweden)

    Changqing Luo

    Full Text Available Insects have evolved a variety of structures and mechanisms to produce sounds, which are used for communication both within and between species. Among acoustic insects, cicada males are particularly known for their loud and diverse sounds which function importantly in communication. The main method of sound production in cicadas is the tymbal mechanism, and a relative small number of cicada species possess both tymbal and stridulatory organs. However, cicadas of the genus Karenia do not have any specialized sound-producing structures, so they are referred to as "mute". This denomination is quite misleading, as they indeed produce sounds. Here, we investigate the sound-producing mechanism and acoustic communication of the "mute" cicada, Karenia caelatata, and discover a new sound-production mechanism for cicadas: i.e., K. caelatata produces impact sounds by banging the forewing costa against the operculum. The temporal, frequency and amplitude characteristics of the impact sounds are described. Morphological studies and reflectance-based analyses reveal that the structures involved in sound production of K. caelatata (i.e., forewing, operculum, cruciform elevation, and wing-holding groove on scutellum are all morphologically modified. Acoustic playback experiments and behavioral observations suggest that the impact sounds of K. caelatata are used in intraspecific communication and function as calling songs. The new sound-production mechanism expands our knowledge on the diversity of acoustic signaling behavior in cicadas and further underscores the need for more bioacoustic studies on cicadas which lack tymbal mechanism.

  19. Black hole blues and other songs from outer space

    CERN Document Server

    Levin, Janna

    2016-01-01

    The authoritative story of the headline-making discovery of gravitational waves—by an eminent theoretical astrophysicist and award-winning writer. From the author of How the Universe Got Its Spots and A Madman Dreams of Turing Machines, the epic story of the scientific campaign to record the soundtrack of our universe. Black holes are dark. That is their essence. When black holes collide, they will do so unilluminated. Yet the black hole collision is an event more powerful than any since the origin of the universe. The profusion of energy will emanate as waves in the shape of spacetime: gravitational waves. No telescope will ever record the event; instead, the only evidence would be the sound of spacetime ringing. In 1916, Einstein predicted the existence of gravitational waves, his top priority after he proposed his theory of curved spacetime. One century later, we are recording the first sounds from space, the soundtrack to accompany astronomy’s silent movie. In Black Hole Blues and Other Songs fro...

  20. How do "mute" cicadas produce their calling songs?

    Science.gov (United States)

    Luo, Changqing; Wei, Cong; Nansen, Christian

    2015-01-01

    Insects have evolved a variety of structures and mechanisms to produce sounds, which are used for communication both within and between species. Among acoustic insects, cicada males are particularly known for their loud and diverse sounds which function importantly in communication. The main method of sound production in cicadas is the tymbal mechanism, and a relative small number of cicada species possess both tymbal and stridulatory organs. However, cicadas of the genus Karenia do not have any specialized sound-producing structures, so they are referred to as "mute". This denomination is quite misleading, as they indeed produce sounds. Here, we investigate the sound-producing mechanism and acoustic communication of the "mute" cicada, Karenia caelatata, and discover a new sound-production mechanism for cicadas: i.e., K. caelatata produces impact sounds by banging the forewing costa against the operculum. The temporal, frequency and amplitude characteristics of the impact sounds are described. Morphological studies and reflectance-based analyses reveal that the structures involved in sound production of K. caelatata (i.e., forewing, operculum, cruciform elevation, and wing-holding groove on scutellum) are all morphologically modified. Acoustic playback experiments and behavioral observations suggest that the impact sounds of K. caelatata are used in intraspecific communication and function as calling songs. The new sound-production mechanism expands our knowledge on the diversity of acoustic signaling behavior in cicadas and further underscores the need for more bioacoustic studies on cicadas which lack tymbal mechanism.

  1. How Do “Mute” Cicadas Produce Their Calling Songs?

    Science.gov (United States)

    Luo, Changqing; Wei, Cong; Nansen, Christian

    2015-01-01

    Insects have evolved a variety of structures and mechanisms to produce sounds, which are used for communication both within and between species. Among acoustic insects, cicada males are particularly known for their loud and diverse sounds which function importantly in communication. The main method of sound production in cicadas is the tymbal mechanism, and a relative small number of cicada species possess both tymbal and stridulatory organs. However, cicadas of the genus Karenia do not have any specialized sound-producing structures, so they are referred to as “mute”. This denomination is quite misleading, as they indeed produce sounds. Here, we investigate the sound-producing mechanism and acoustic communication of the “mute” cicada, Karenia caelatata, and discover a new sound-production mechanism for cicadas: i.e., K. caelatata produces impact sounds by banging the forewing costa against the operculum. The temporal, frequency and amplitude characteristics of the impact sounds are described. Morphological studies and reflectance-based analyses reveal that the structures involved in sound production of K. caelatata (i.e., forewing, operculum, cruciform elevation, and wing-holding groove on scutellum) are all morphologically modified. Acoustic playback experiments and behavioral observations suggest that the impact sounds of K. caelatata are used in intraspecific communication and function as calling songs. The new sound-production mechanism expands our knowledge on the diversity of acoustic signaling behavior in cicadas and further underscores the need for more bioacoustic studies on cicadas which lack tymbal mechanism. PMID:25714608

  2. Further differentiating item and order information in semantic memory: students' recall of words from the "CU Fight Song", Harry Potter book titles, and Scooby Doo theme song.

    Science.gov (United States)

    Overstreet, Michael F; Healy, Alice F; Neath, Ian

    2017-01-01

    University of Colorado (CU) students were tested for both order and item information in their semantic memory for the "CU Fight Song". Following an earlier study by Overstreet and Healy [(2011). Item and order information in semantic memory: Students' retention of the "CU fight song" lyrics. Memory & Cognition, 39, 251-259. doi: 10.3758/s13421-010-0018-3 ], a symmetrical bow-shaped serial position function (with both primacy and recency advantages) was found for reconstructing the order of the nine lines in the song, whereas a function with no primacy advantage was found for recalling a missing word from each line. This difference between order and item information was found even though students filled in missing words without any alternatives provided and missing words came from the beginning, middle, or end of each line. Similar results were found for CU students' recall of the sequence of Harry Potter book titles and the lyrics of the Scooby Doo theme song. These findings strengthen the claim that the pronounced serial position function in semantic memory occurs largely because of the retention of order, rather than item, information.

  3. A sensorimotor area in the songbird brain is required for production of vocalizations in the song learning period of development.

    Science.gov (United States)

    Piristine, Hande C; Choetso, Tenzin; Gobes, Sharon M H

    2016-11-01

    Sensory feedback is essential for acquiring and maintaining complex motor behaviors, including birdsong. In zebra finches, auditory feedback reaches the song control circuits primarily through the nucleus interfacialis nidopalii (Nif), which provides excitatory input to HVC (proper name)-a premotor region essential for the production of learned vocalizations. Despite being one of the major inputs to the song control pathway, the role of Nif in generating vocalizations is not well understood. To address this, we transiently inactivated Nif in late juvenile zebra finches. Upon Nif inactivation (in both hemispheres or on one side only), birds went from singing stereotyped zebra finch song to uttering highly variable and unstructured vocalizations resembling sub-song, an early juvenile song form driven by a basal ganglia circuit. Simultaneously inactivating Nif and LMAN (lateral magnocellular nucleus of the anterior nidopallium), the output nucleus of a basal ganglia circuit, inhibited song production altogether. These results suggest that Nif is required for generating the premotor drive for song. Permanent Nif lesions, in contrast, have only transient effects on vocal production, with song recovering within a day. The sensorimotor nucleus Nif thus produces a premotor drive to the motor pathway that is acutely required for generating learned vocalizations, but once permanently removed, the song system can compensate for its absence. © 2016 Wiley Periodicals, Inc. Develop Neurobiol 76: 1213-1225, 2016. © 2016 Wiley Periodicals, Inc.

  4. Responses to playback of different subspecies songs in the Reed Bunting (Emberiza s. schoeniclus)

    DEFF Research Database (Denmark)

    Matessi, Giuliano; Dabelsteen, Torben; Pilastro, A.

    2000-01-01

    Populations of Reed Buntings Emberiza schoeniclus in the western Palearctic are classified in two major subspecies groups according to morphology: northern migratory schoeniclus and Mediterranean resident intermedia. Songs of the two groups differ mainly in complexity and syllable structure......, with intermedia songs being more complex. We explored the possibilities of song as a subspecies isolating mechanism by testing if male schoeniclus Reed Buntings reacted differently to field playbacks of songs from their own subspecies group, from the foreign subspecies group and from a control species...

  5. Targeting functional motifs of a protein family

    Science.gov (United States)

    Bhadola, Pradeep; Deo, Nivedita

    2016-10-01

    The structural organization of a protein family is investigated by devising a method based on the random matrix theory (RMT), which uses the physiochemical properties of the amino acid with multiple sequence alignment. A graphical method to represent protein sequences using physiochemical properties is devised that gives a fast, easy, and informative way of comparing the evolutionary distances between protein sequences. A correlation matrix associated with each property is calculated, where the noise reduction and information filtering is done using RMT involving an ensemble of Wishart matrices. The analysis of the eigenvalue statistics of the correlation matrix for the β -lactamase family shows the universal features as observed in the Gaussian orthogonal ensemble (GOE). The property-based approach captures the short- as well as the long-range correlation (approximately following GOE) between the eigenvalues, whereas the previous approach (treating amino acids as characters) gives the usual short-range correlations, while the long-range correlations are the same as that of an uncorrelated series. The distribution of the eigenvector components for the eigenvalues outside the bulk (RMT bound) deviates significantly from RMT observations and contains important information about the system. The information content of each eigenvector of the correlation matrix is quantified by introducing an entropic estimate, which shows that for the β -lactamase family the smallest eigenvectors (low eigenmodes) are highly localized as well as informative. These small eigenvectors when processed gives clusters involving positions that have well-defined biological and structural importance matching with experiments. The approach is crucial for the recognition of structural motifs as shown in β -lactamase (and other families) and selectively identifies the important positions for targets to deactivate (activate) the enzymatic actions.

  6. ROMANIAN FOLKLORE MOTIFS IN FASHION DESIGN

    Directory of Open Access Journals (Sweden)

    MOCENCO Alexandra

    2014-05-01

    Full Text Available The traditional Romanian costume such as the entire popular art (architecture, woodcarvins, pottery etc. was born and lasted in our country since ancient times. Closely related to human existence, the traditional costume reflected over the years as reflected nowadays, the mentality and artistic conception of the people. Today the traditional Romanian costume became an inspiration source to the wholesale fashion production industry designers, both Romanian and international. Although the contemporary designers are working in accordance with a vision, using a wide area of styles, methods and current technology, they usually return to traditional techniques and ethnic folklore motifs, which converts and resize them, integrating them in their contemporary space. Adrian Oianu is a very appreciated Romanian designer who launched two collections inspired by his native’s country traditional costumes: “Suflecata pan’ la brau” (“Turned up ‘til the belt” and “Bucurie” (“Joy”. Dorin Negrau had as inspiration for his “Lost” collection the traditional costume from the Bihor region. Yves Saint Laurent had a collection inspired by the Romanian traditional flax blouses called “La blouse roumaine”. The paper presents the traditional Romanian values throw fashion collections. The research activity will create innovative concepts to support the garment industry in order to develop their own brand and to bring the design activities in Romania at an international level. The research was conducted during the initial stage of a project, financed through national founds, consisting in a documentary study on ethnographic characteristics of the popular costume from different regions of the country.

  7. Song practice promotes acute vocal variability at a key stage of sensorimotor learning.

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    Julie E Miller

    Full Text Available BACKGROUND: Trial by trial variability during motor learning is a feature encoded by the basal ganglia of both humans and songbirds, and is important for reinforcement of optimal motor patterns, including those that produce speech and birdsong. Given the many parallels between these behaviors, songbirds provide a useful model to investigate neural mechanisms underlying vocal learning. In juvenile and adult male zebra finches, endogenous levels of FoxP2, a molecule critical for language, decrease two hours after morning song onset within area X, part of the basal ganglia-forebrain pathway dedicated to song. In juveniles, experimental 'knockdown' of area X FoxP2 results in abnormally variable song in adulthood. These findings motivated our hypothesis that low FoxP2 levels increase vocal variability, enabling vocal motor exploration in normal birds. METHODOLOGY/PRINCIPAL FINDINGS: After two hours in either singing or non-singing conditions (previously shown to produce differential area X FoxP2 levels, phonological and sequential features of the subsequent songs were compared across conditions in the same bird. In line with our prediction, analysis of songs sung by 75 day (75d birds revealed that syllable structure was more variable and sequence stereotypy was reduced following two hours of continuous practice compared to these features following two hours of non-singing. Similar trends in song were observed in these birds at 65d, despite higher overall within-condition variability at this age. CONCLUSIONS/SIGNIFICANCE: Together with previous work, these findings point to the importance of behaviorally-driven acute periods during song learning that allow for both refinement and reinforcement of motor patterns. Future work is aimed at testing the observation that not only does vocal practice influence expression of molecular networks, but that these networks then influence subsequent variability in these skills.

  8. Testosterone-dependency of male solo song in a duetting songbird--evidence from females.

    Science.gov (United States)

    Voigt, Cornelia; Leitner, Stefan

    2013-01-01

    For male songbirds of the temperate zone there is a tight link between seasonal song behaviour and circulating testosterone levels. Such a relationship does not seem to hold for tropical species where singing can occur year-round and breeding seasons are often extended. White-browed sparrow weavers (Plocepasser mahali) are cooperatively breeding songbirds with a dominant breeding pair and male and female subordinates found in eastern and southern Africa. Each group defends an all-purpose territory year-round. While all group members sing duets and choruses, the most dominant male additionally sings a solo song that comprises a distinct and large syllable repertoire. Previous studies suggested this type of song being associated with reproduction but failed to support a relationship with males' circulating testosterone levels. The present study aimed to investigate the steroid hormone sensitivity of the solo song in more detail. We found that dominant males had significantly higher circulating testosterone levels than subordinates during the early and late breeding seasons. No changes in solo song characteristics were found between both time points. Further, experimental implantation of captive adult females with exogenous testosterone induced solo singing within one week of treatment. Such females produced male-typical song regarding overall structure and syllable composition. Sex differences existed, however, concerning singing activity, repertoire size and temporal organisation of song. These results suggest that solo singing in white-browed sparrow weavers is under the control of gonadal steroid hormones. Moreover, the behaviour is not male-specific but can be activated in females under certain conditions. Copyright © 2012 Elsevier Inc. All rights reserved.

  9. Neural correlates of binding lyrics and melodies for the encoding of new songs.

    Science.gov (United States)

    Alonso, Irene; Davachi, Lila; Valabrègue, Romain; Lambrecq, Virginie; Dupont, Sophie; Samson, Séverine

    2016-02-15

    Songs naturally bind lyrics and melody into a unified representation. Using a subsequent memory paradigm, we examined the neural processes associated with binding lyrics and melodies during song encoding. Participants were presented with songs in two conditions: a unified condition (melodies sung with lyrics), and a separate condition (melodies sung with the syllable "la"). In both cases, written lyrics were displayed and participants were instructed to memorize them by repeating them covertly or by generating mental images of the songs. We expected the unified condition to recruit the posterior superior temporal gyrus, known to be involved in perceptual integration of songs, as well as the left inferior frontal gyrus (IFG). Conversely, we hypothesized that the separate condition would engage a larger network including the hippocampus to bind lyrics and melodies of songs, and the basal ganglia and the cerebellum to ensure the correct sequence coupling of verbal and musical information in time. Binding lyrics and melodies in the unified condition revealed activation of the left IFG, bilateral middle temporal gyrus (MTG), and left motor cortex, suggesting a strong linguistic processing for this condition. Binding in the separate compared to the unified condition revealed greater activity in the right hippocampus as well as other areas including the left caudate, left cerebellum, and right IFG. This study provides novel evidence for the role of the right hippocampus in binding lyrics and melodies in songs. Results are discussed in light of studies of binding in the visual domain and highlight the role of regions involved in timing and synchronization such as the basal ganglia and the cerebellum. Copyright © 2015. Published by Elsevier Inc.

  10. Phenotypic differentiation in love song traits among sibling species of the Lutzomyia longipalpis complex in Brazil.

    Science.gov (United States)

    Vigoder, Felipe M; Souza, Nataly A; Brazil, Reginaldo P; Bruno, Rafaela V; Costa, Pietra L; Ritchie, Michael G; Klaczko, Louis B; Peixoto, Alexandre A

    2015-05-28

    Brazilian populations of Lutzomyia longipalpis may constitute a complex of cryptic species, and this report investigates the distribution and number of potential sibling species. One of the main differences observed among Brazilian populations is the type of acoustic signal produced by males during copulation. These copulation song differences seem to be evolving faster than neutral molecular markers and have been suggested to contribute to insemination failure observed in crosses between these sibling species. In previous studies, two main types of copulation songs were found, burst-type and pulse-type. The latter type can, in turn, be further subdivided into five different patterns. We recorded male song from 13 new populations of the L. longipalpis complex from Brazil and compared the songs with 12 already available. Out of these 25 populations, 16 produce burst-type and 9 produce pulse-type songs. We performed a principal component analysis in these two main groups separately and an additional discriminant analysis in the pulse-type group. The pulse-type populations showed a clear separation between the five known patterns with a high correspondence of individuals to their correct group, confirming the differentiation between them. The distinctiveness of the burst-type subgroups was much lower than that observed among the pulse-type groups and no clear population structure was observed. This suggests that the burst-type populations represent a single species. Overall, our results are consistent with the existence in Brazil of at least six species of the L. longipalpis complex, one with a wide distribution comprising all the populations with burst-type songs, and five more closely related allopatric siblings with different pulse-type song patterns and more restricted distribution ranges.

  11. Merging the arts of song and dance: New methodical options for teaching students within the disciplines of song and dance

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    Johanne Karen Hagen

    2017-01-01

    Full Text Available To learn, acquire knowledge, and develop skills is an embodied process. In this article, the authors argue that merging the fields of song and dance is dependent on a deeper understanding of how the mind and the body interact, and they utilize the concept of enactive cognition to explain these processes. The authors maintain that students need insight into these processes in order to improve their learning and, consequently, their performance. Retrospective examples taken from three educational situations within the musical theatre context elucidate the discussion of the concepts of alignment and breathing. These frequently used concepts are often a source of confusion and misunderstanding for the student. To alleviate this, a stronger, interdisciplinary dialogue among the singing and dance teachers who are involved in the genre of musical theatre needs to be developed. The authors suggest collaborative teaching as a means to develop the teaching methods and as the pathway to attaining a common base when integrating the skills of singing and dancing.

  12. Review article: The mountain motif in the plot of Matthew

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    Gert J. Volschenk

    2010-09-01

    Full Text Available This article reviewed T.L. Donaldson’s book, Jesus on the mountain: A study in Matthean theology, published in 1985 by JSOT Press, Sheffield, and focused on the mountain motif in the structure and plot of the Gospel of Matthew, in addition to the work of Donaldson on the mountain motif as a literary motif and as theological symbol. The mountain is a primary theological setting for Jesus’ ministry and thus is an important setting, serving as one of the literary devices by which Matthew structured and progressed his narrative. The Zion theological and eschatological significance and Second Temple Judaism serve as the historical and theological background for the mountain motif. The last mountain setting (Mt 28:16–20 is the culmination of the three theological themes in the plot of Matthew, namely Christology, ecclesiology and salvation history.

  13. Methods and statistics for combining motif match scores.

    Science.gov (United States)

    Bailey, T L; Gribskov, M

    1998-01-01

    Position-specific scoring matrices are useful for representing and searching for protein sequence motifs. A sequence family can often be described by a group of one or more motifs, and an effective search must combine the scores for matching a sequence to each of the motifs in the group. We describe three methods for combining match scores and estimating the statistical significance of the combined scores and evaluate the search quality (classification accuracy) and the accuracy of the estimate of statistical significance of each. The three methods are: 1) sum of scores, 2) sum of reduced variates, 3) product of score p-values. We show that method 3) is superior to the other two methods in both regards, and that combining motif scores indeed gives better search accuracy. The MAST sequence homology search algorithm utilizing the product of p-values scoring method is available for interactive use and downloading at URL http:/(/)www.sdsc.edu/MEME.

  14. DNA regulatory motif selection based on support vector machine ...

    African Journals Online (AJOL)

    ... machine (SVM) and its application in microarray experiment of Kashin-Beck disease. ... speed and amount of the corresponding mRNA in gene replication process. ... and revealed that some motifs may be related to the immune reactions.

  15. Phylogeny based discovery of regulatory elements

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    Cohen Barak A

    2006-05-01

    Full Text Available Abstract Background Algorithms that locate evolutionarily conserved sequences have become powerful tools for finding functional DNA elements, including transcription factor binding sites; however, most methods do not take advantage of an explicit model for the constrained evolution of functional DNA sequences. Results We developed a probabilistic framework that combines an HKY85 model, which assigns probabilities to different base substitutions between species, and weight matrix models of transcription factor binding sites, which describe the probabilities of observing particular nucleotides at specific positions in the binding site. The method incorporates the phylogenies of the species under consideration and takes into account the position specific variation of transcription factor binding sites. Using our framework we assessed the suitability of alignments of genomic sequences from commonly used species as substrates for comparative genomic approaches to regulatory motif finding. We then applied this technique to Saccharomyces cerevisiae and related species by examining all possible six base pair DNA sequences (hexamers and identifying sequences that are conserved in a significant number of promoters. By combining similar conserved hexamers we reconstructed known cis-regulatory motifs and made predictions of previously unidentified motifs. We tested one prediction experimentally, finding it to be a regulatory element involved in the transcriptional response to glucose. Conclusion The experimental validation of a regulatory element prediction missed by other large-scale motif finding studies demonstrates that our approach is a useful addition to the current suite of tools for finding regulatory motifs.

  16. Song exposure regulates known and novel microRNAs in the zebra finch auditory forebrain

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    Kim Jong H

    2011-05-01

    Full Text Available Abstract Background In an important model for neuroscience, songbirds learn to discriminate songs they hear during tape-recorded playbacks, as demonstrated by song-specific habituation of both behavioral and neurogenomic responses in the auditory forebrain. We hypothesized that microRNAs (miRNAs or miRs may participate in the changing pattern of gene expression induced by song exposure. To test this, we used massively parallel Illumina sequencing to analyse small RNAs from auditory forebrain of adult zebra finches exposed to tape-recorded birdsong or silence. Results In the auditory forebrain, we identified 121 known miRNAs conserved in other vertebrates. We also identified 34 novel miRNAs that do not align to human or chicken genomes. Five conserved miRNAs showed significant and consistent changes in copy number after song exposure across three biological replications of the song-silence comparison, with two increasing (tgu-miR-25, tgu-miR-192 and three decreasing (tgu-miR-92, tgu-miR-124, tgu-miR-129-5p. We also detected a locus on the Z sex chromosome that produces three different novel miRNAs, with supporting evidence from Northern blot and TaqMan qPCR assays for differential expression in males and females and in response to song playbacks. One of these, tgu-miR-2954-3p, is predicted (by TargetScan to regulate eight song-responsive mRNAs that all have functions in cellular proliferation and neuronal differentiation. Conclusions The experience of hearing another bird singing alters the profile of miRNAs in the auditory forebrain of zebra finches. The response involves both known conserved miRNAs and novel miRNAs described so far only in the zebra finch, including a novel sex-linked, song-responsive miRNA. These results indicate that miRNAs are likely to contribute to the unique behavioural biology of learned song communication in songbirds.

  17. The neural dynamics of song syntax in songbirds

    Science.gov (United States)

    Jin, Dezhe

    2010-03-01

    Songbird is ``the hydrogen atom'' of the neuroscience of complex, learned vocalizations such as human speech. Songs of Bengalese finch consist of sequences of syllables. While syllables are temporally stereotypical, syllable sequences can vary and follow complex, probabilistic syntactic rules, which are rudimentarily similar to grammars in human language. Songbird brain is accessible to experimental probes, and is understood well enough to construct biologically constrained, predictive computational models. In this talk, I will discuss the structure and dynamics of neural networks underlying the stereotypy of the birdsong syllables and the flexibility of syllable sequences. Recent experiments and computational models suggest that a syllable is encoded in a chain network of projection neurons in premotor nucleus HVC (proper name). Precisely timed spikes propagate along the chain, driving vocalization of the syllable through downstream nuclei. Through a computational model, I show that that variable syllable sequences can be generated through spike propagations in a network in HVC in which the syllable-encoding chain networks are connected into a branching chain pattern. The neurons mutually inhibit each other through the inhibitory HVC interneurons, and are driven by external inputs from nuclei upstream of HVC. At a branching point that connects the final group of a chain to the first groups of several chains, the spike activity selects one branch to continue the propagation. The selection is probabilistic, and is due to the winner-take-all mechanism mediated by the inhibition and noise. The model predicts that the syllable sequences statistically follow partially observable Markov models. Experimental results supporting this and other predictions of the model will be presented. We suggest that the syntax of birdsong syllable sequences is embedded in the connection patterns of HVC projection neurons.

  18. He Started the Whole World Singing a Song

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    Brian R. Cates

    2015-06-01

    Full Text Available Throughout history, music has moved people in powerful ways, so much so that, at times, it leaves them speechless. They realize that it is a song, full of notes and rhythms, yet at the same time, it makes them become profoundly aware that there is something more, humming just below the surface. My presentation seeks to enter into this music moment by asking why these types of moments even occur. Does music speak or communicate? If so, does it communicate something meaningful and significant? What is the mechanism by which music conveys this meaning? How can this meaning be articulated in words? Many fields of science such as neuroimaging and psychoacoustics have revealed an empirical connection between language and music, namely that the human brain processes and understands music as communication and speech. Building upon this, I then discuss musical meaning by stating that music has both intrinsic, structural meaning, as well as extrinsic, referential meaning, and that together, these two paradigms of meaning aid the listener in experiencing the full nature of the music itself. I next introduce the field of theology, showing how throughout the Bible, all of creation has musically celebrated the presence of an immanently transcendent God. With all of these things in mind, I postulate that music has the capacity to act as a channel through which one can hear a linguistic God speaking vitality, order, beauty, depth, structure, and wonder into His creation by His Word and Spirit. The presentation concludes by asserting that music has the capacity to reveal the presence of God in our everyday lives through the divine realities of hope, faith, and love.

  19. Love Song 1, 'Madami (My Love for You)'

    OpenAIRE

    Hu Qianma

    2011-01-01

    .wav audio file This song says, “I bless you from my immaculate heart. Different people respond differently at various times, but my feelings for you won't change. I’ll always think about you.” 这首歌说道:“我从我纯洁的内心祝福你。不同的人在各种时期有不同的回答,但是我对你的感觉不会有任何变化。我会一直都想着你”。 གླུ་འདིས་འདི་ལྟར་བཤད་ཡོད་དེ། ངས་ཁྱོད་ལ་དྭངས་གཙང་གི་སེམས་པ་ནང་ནས་སྨོན་ལམ་ཞུ། མི་འདྲ་བའི་མིེ་ཡིས་དུས་མི་མཐུན་པར་ལན་འདེབས་པའང་འདྲ་བ་མ་རེད། འོན་ཀྱང་ངས་ཁྱོད་ལ་བཅངས་པའི་སེམས་པ་ནི་ནམ་ཡང་འགྱུར་བ་མེད། ངས་དུས་རྒྱུན་དུ་ཁྱོད་རང་སེམས་ལ་དྲན་ནས་འད...

  20. Characterizing Motif Dynamics of Electric Brain Activity Using Symbolic Analysis

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    Massimiliano Zanin

    2014-10-01

    Full Text Available Motifs are small recurring circuits of interactions which constitute the backbone of networked systems. Characterizing motif dynamics is therefore key to understanding the functioning of such systems. Here we propose a method to define and quantify the temporal variability and time scales of electroencephalogram (EEG motifs of resting brain activity. Given a triplet of EEG sensors, links between them are calculated by means of linear correlation; each pattern of links (i.e., each motif is then associated to a symbol, and its appearance frequency is analyzed by means of Shannon entropy. Our results show that each motif becomes observable with different coupling thresholds and evolves at its own time scale, with fronto-temporal sensors emerging at high thresholds and changing at fast time scales, and parietal ones at low thresholds and changing at slower rates. Finally, while motif dynamics differed across individuals, for each subject, it showed robustness across experimental conditions, indicating that it could represent an individual dynamical signature.

  1. Efficient motif finding algorithms for large-alphabet inputs

    Directory of Open Access Journals (Sweden)

    Pavlovic Vladimir

    2010-10-01

    Full Text Available Abstract Background We consider the problem of identifying motifs, recurring or conserved patterns, in the biological sequence data sets. To solve this task, we present a new deterministic algorithm for finding patterns that are embedded as exact or inexact instances in all or most of the input strings. Results The proposed algorithm (1 improves search efficiency compared to existing algorithms, and (2 scales well with the size of alphabet. On a synthetic planted DNA motif finding problem our algorithm is over 10× more efficient than MITRA, PMSPrune, and RISOTTO for long motifs. Improvements are orders of magnitude higher in the same setting with large alphabets. On benchmark TF-binding site problems (FNP, CRP, LexA we observed reduction in running time of over 12×, with high detection accuracy. The algorithm was also successful in rapidly identifying protein motifs in Lipocalin, Zinc metallopeptidase, and supersecondary structure motifs for Cadherin and Immunoglobin families. Conclusions Our algorithm reduces computational complexity of the current motif finding algorithms and demonstrate strong running time improvements over existing exact algorithms, especially in important and difficult cases of large-alphabet sequences.

  2. Discovering Motifs in Biological Sequences Using the Micron Automata Processor.

    Science.gov (United States)

    Roy, Indranil; Aluru, Srinivas

    2016-01-01

    Finding approximately conserved sequences, called motifs, across multiple DNA or protein sequences is an important problem in computational biology. In this paper, we consider the (l, d) motif search problem of identifying one or more motifs of length l present in at least q of the n given sequences, with each occurrence differing from the motif in at most d substitutions. The problem is known to be NP-complete, and the largest solved instance reported to date is (26,11). We propose a novel algorithm for the (l,d) motif search problem using streaming execution over a large set of non-deterministic finite automata (NFA). This solution is designed to take advantage of the micron automata processor, a new technology close to deployment that can simultaneously execute multiple NFA in parallel. We demonstrate the capability for solving much larger instances of the (l, d) motif search problem using the resources available within a single automata processor board, by estimating run-times for problem instances (39,18) and (40,17). The paper serves as a useful guide to solving problems using this new accelerator technology.

  3. An experimental test of a fundamental food web motif.

    Science.gov (United States)

    Rip, Jason M K; McCann, Kevin S; Lynn, Denis H; Fawcett, Sonia

    2010-06-07

    Large-scale changes to the world's ecosystem are resulting in the deterioration of biostructure-the complex web of species interactions that make up ecological communities. A difficult, yet crucial task is to identify food web structures, or food web motifs, that are the building blocks of this baroque network of interactions. Once identified, these food web motifs can then be examined through experiments and theory to provide mechanistic explanations for how structure governs ecosystem stability. Here, we synthesize recent ecological research to show that generalist consumers coupling resources with different interaction strengths, is one such motif. This motif amazingly occurs across an enormous range of spatial scales, and so acts to distribute coupled weak and strong interactions throughout food webs. We then perform an experiment that illustrates the importance of this motif to ecological stability. We find that weak interactions coupled to strong interactions by generalist consumers dampen strong interaction strengths and increase community stability. This study takes a critical step by isolating a common food web motif and through clear, experimental manipulation, identifies the fundamental stabilizing consequences of this structure for ecological communities.

  4. PISMA: A Visual Representation of Motif Distribution in DNA Sequences

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    Rogelio Alcántara-Silva

    2017-03-01

    Full Text Available Background: Because the graphical presentation and analysis of motif distribution can provide insights for experimental hypothesis, PISMA aims at identifying motifs on DNA sequences, counting and showing them graphically. The motif length ranges from 2 to 10 bases, and the DNA sequences range up to 10 kb. The motif distribution is shown as a bar-code–like, as a gene-map–like, and as a transcript scheme. Results: We obtained graphical schemes of the CpG site distribution from 91 human papillomavirus genomes. Also, we present 2 analyses: one of DNA motifs associated with either methylation-resistant or methylation-sensitive CpG islands and another analysis of motifs associated with exosome RNA secretion. Availability and Implementation: PISMA is developed in Java; it is executable in any type of hardware and in diverse operating systems. PISMA is freely available to noncommercial users. The English version and the User Manual are provided in Supplementary Files 1 and 2, and a Spanish version is available at www.biomedicas.unam.mx/wp-content/software/pisma.zip and www.biomedicas.unam.mx/wp-content/pdf/manual/pisma.pdf .

  5. Male songbird indicates body size with low-pitched advertising songs.

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    Michelle L Hall

    Full Text Available Body size is a key sexually selected trait in many animal species. If size imposes a physical limit on the production of loud low-frequency sounds, then low-pitched vocalisations could act as reliable signals of body size. However, the central prediction of this hypothesis--that the pitch of vocalisations decreases with size among competing individuals--has limited support in songbirds. One reason could be that only the lowest-frequency components of vocalisations are constrained, and this may go unnoticed when vocal ranges are large. Additionally, the constraint may only be apparent in contexts when individuals are indeed advertising their size. Here we explicitly consider signal diversity and performance limits to demonstrate that body size limits song frequency in an advertising context in a songbird. We show that in purple-crowned fairy-wrens, Malurus coronatus coronatus, larger males sing lower-pitched low-frequency advertising songs. The lower frequency bound of all advertising song types also has a significant negative relationship with body size. However, the average frequency of all their advertising songs is unrelated to body size. This comparison of different approaches to the analysis demonstrates how a negative relationship between body size and song frequency can be obscured by failing to consider signal design and the concept of performance limits. Since these considerations will be important in any complex communication system, our results imply that body size constraints on low-frequency vocalisations could be more widespread than is currently recognised.

  6. The Effect of English Verbal Songs on Connected Speech Aspects of Adult English Learners’ Speech Production

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    Farshid Tayari Ashtiani

    2015-02-01

    Full Text Available The present study was an attempt to investigate the impact of English verbal songs on connected speech aspects of adult English learners’ speech production. 40 participants were selected based on the results of their performance in a piloted and validated version of NELSON test given to 60 intermediate English learners in a language institute in Tehran. Then they were equally distributed in two control and experimental groups and received a validated pretest of reading aloud and speaking in English. Afterward, the treatment was performed in 18 sessions by singing preselected songs culled based on some criteria such as popularity, familiarity, amount, and speed of speech delivery, etc. In the end, the posttests of reading aloud and speaking in English were administered. The results revealed that the treatment had statistically positive effects on the connected speech aspects of English learners’ speech production at statistical .05 level of significance. Meanwhile, the results represented that there was not any significant difference between the experimental group’s mean scores on the posttests of reading aloud and speaking. It was thus concluded that providing the EFL learners with English verbal songs could positively affect connected speech aspects of both modes of speech production, reading aloud and speaking. The Findings of this study have pedagogical implications for language teachers to be more aware and knowledgeable of the benefits of verbal songs to promote speech production of language learners in terms of naturalness and fluency. Keywords: English Verbal Songs, Connected Speech, Speech Production, Reading Aloud, Speaking

  7. Science Song Project: Integration of Science, Technology and Music to Learn Science and Process Skills

    Directory of Open Access Journals (Sweden)

    Jiyoon Yoon

    2017-07-01

    Full Text Available It has been critical to find a way for teachers to motivate their young children to learn science and improve science achievement. Since music has been used as a tool for educating young students, this study introduces the science song project to teacher candidates that contains science facts, concepts, laws and theories, and combines them with music for motivating their young children to learn science and improve science achievement. The purpose of the study is to determine the effect of the science song project on teacher candidates’ understanding of science processing skills and their attitudes toward science. The participants were 45 science teacher candidates who were enrolled in an EC-6 (Early Childhood through Grade 6 program in the teacher certification program at a racially diverse Texas public research university. To collect data, this study used two instruments: pre-and post-self efficacy tests before and after the science teacher candidates experienced the science song project and final reflective essay at the end of the semester. The results show that while developing their songs, the participating teacher candidates experienced a process for science practice, understood science concepts and facts, and positively improved attitudes toward science. This study suggests that the science song project is a science instruction offering rich experiences of process-based learning and positive attitudes toward science.

  8. Changes in the prevalence of alcohol use in rap song lyrics, 1979-97.

    Science.gov (United States)

    Herd, Denise

    2005-09-01

    This paper explores the role of changing images of drinking and alcoholic beverage use in rap music from its beginnings in the United States in the late 1970s to the late 1990s. A sample of 341 rap music song lyrics released from 1979 to 1997 were selected using Billboard and Gavin rating charts. Song lyrics were coded for music genres, alcohol beverage types and brand names, drinking behaviors, drinking contexts, intoxication, attitudes towards alcohol and consequences of drinking. From 1979 to 1997, songs with references to alcohol increased fivefold (from 8 to 44%); those exhibiting positive attitudes rose from 43% to 73%; and brand name mentions increased from 46% to 71%. There were also significant increases in songs mentioning champagne and liquor (mainly expensive brand names) when comparing songs released after 1994 with those from previous years. In addition, there were significant increases in references to alcohol to signify glamour and wealth, and using alcohol with drugs and for recreational purposes. The findings also showed that alcohol use in rap music was much more likely to result in positive than negative consequences. Many of these findings are consistent with the idea that rap music has been profoundly affected by commercial forces and the marketing of alcoholic beverages. In addition, it is possible that the increase in references to alcoholic beverages in rap music, particularly spirits, is a reflection of a broader advertising culture which increasingly associates African Americans with alcohol use.

  9. Male songbird indicates body size with low-pitched advertising songs.

    Science.gov (United States)

    Hall, Michelle L; Kingma, Sjouke A; Peters, Anne

    2013-01-01

    Body size is a key sexually selected trait in many animal species. If size imposes a physical limit on the production of loud low-frequency sounds, then low-pitched vocalisations could act as reliable signals of body size. However, the central prediction of this hypothesis--that the pitch of vocalisations decreases with size among competing individuals--has limited support in songbirds. One reason could be that only the lowest-frequency components of vocalisations are constrained, and this may go unnoticed when vocal ranges are large. Additionally, the constraint may only be apparent in contexts when individuals are indeed advertising their size. Here we explicitly consider signal diversity and performance limits to demonstrate that body size limits song frequency in an advertising context in a songbird. We show that in purple-crowned fairy-wrens, Malurus coronatus coronatus, larger males sing lower-pitched low-frequency advertising songs. The lower frequency bound of all advertising song types also has a significant negative relationship with body size. However, the average frequency of all their advertising songs is unrelated to body size. This comparison of different approaches to the analysis demonstrates how a negative relationship between body size and song frequency can be obscured by failing to consider signal design and the concept of performance limits. Since these considerations will be important in any complex communication system, our results imply that body size constraints on low-frequency vocalisations could be more widespread than is currently recognised.

  10. The Effect of Listening to English Songs on Iranian EFL Pre-intermediate Learners’ Listening Comprehension

    Directory of Open Access Journals (Sweden)

    Mahin Rezaei

    2015-05-01

    Full Text Available The aim of this study was to find out whether listening to English songs can improve pre-intermediate EFL learners’ listening comprehension. To this end, a non-randomized pretest-posttest control group design as one of the quasi-experimental research designs was employed. The sample of the study consisted of 40 male and female English learners from two classes in an Institute in Marand, Iran. The two classes were randomly assigned into the experimental and control groups.  Then, a PET test was used to check the homogeneity of both groups. The listening section of PET was also considered as the pretest of the study. Then, fifteen English songs were used in the experimental group during the treatment period. Each session, within 45 minutes, one song was played for and practiced with the learners. Meanwhile, the control group had their usual teacher -fronted class without listening to songs. At the end, both groups were post tested on their listening comprehension using the listening section of another version of PET. The collected data were analyzed using Independent-Samples and Paired-Samples t-tests. The results revealed a statistically significant improvement in the performance of the experimental group. It is implied that songs are not only an entertaining tool but they can also be used as a pedagogic material in improving learners’ listening comprehension.

  11. "Wait a while, my love" -- an Indonesian popular song with a family planning message.

    Science.gov (United States)

    Pekerti, R; Musa, R

    1989-10-01

    "Wait a While, My Love," recorded by pop singer Irianti Emingpraja, was the first Indonesian rock sock to contain a family planning message. The album including the song has sold over 100,000 copies. The song has also been packaged as a 60-second video that can be used as an opening theme for radio and television programs. The song, aimed at encouraging Indonesian youth to postpone marriage, has the following lyrics: "Flying free like a seagull/I'll cover many places 'round the world/Give me time for study and reflection, to grow as a mature wise woman/Oh, wait a while, my love/Don't buy me a ring, reflection of your inner love/I'll climb my way up to the top of the world/And reaching our rainbow of hope." The song was produced with support from the United Nations Fund for Population Activities and the Indonesian National Family Planning Coordinating Board. Key factors to be examined in producing a popular song with a family planning message include the specific message desired, the target audience, type of music, the singer, the producer, marketing, a multimedia campaign strategy, and distribution outlets.

  12. Causes and consequences of song amplitude adjustment in a territorial bird: a case study in nightingales

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    Brumm Henrik

    2004-01-01

    Full Text Available Vocal amplitude, one of the crucial factors for the exchange of acoustic signals, has been neglected in studies of animal communication, but recent studies on song variation in Common Nightingales Luscinia megarhynchos have revealed new insights into its importance in the singing behavior of territorial birds. In nightingales song amplitude is not maximized per se, but is individually regulated according to the level of masking background noise. Also, birds adjust their vocal intensity according to social variables, as in male-male interactions. Moreover, during such interactions, males exploited the directionality of their songs to broadcast them in the direction of the intended receivers ensuring the most effective signal transmission. Studies of the development of this typical long-range signaling suggest that sound level is highly interrelated with overall developmental progression and learning, and thus should be viewed as an integral part of song ontogeny. I conclude that song amplitude is a dynamic feature of the avian signal system, which is individually regulated according to the ecological demands of signal transmission and the social context of communication.

  13. Rapid effects of hearing song on catecholaminergic activity in the songbird auditory pathway.

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    Lisa L Matragrano

    Full Text Available Catecholaminergic (CA neurons innervate sensory areas and affect the processing of sensory signals. For example, in birds, CA fibers innervate the auditory pathway at each level, including the midbrain, thalamus, and forebrain. We have shown previously that in female European starlings, CA activity in the auditory forebrain can be enhanced by exposure to attractive male song for one week. It is not known, however, whether hearing song can initiate that activity more rapidly. Here, we exposed estrogen-primed, female white-throated sparrows to conspecific male song and looked for evidence of rapid synthesis of catecholamines in auditory areas. In one hemisphere of the brain, we used immunohistochemistry to detect the phosphorylation of tyrosine hydroxylase (TH, a rate-limiting enzyme in the CA synthetic pathway. We found that immunoreactivity for TH phosphorylated at serine 40 increased dramatically in the auditory forebrain, but not the auditory thalamus and midbrain, after 15 min of song exposure. In the other hemisphere, we used high pressure liquid chromatography to measure catecholamines and their metabolites. We found that two dopamine metabolites, dihydroxyphenylacetic acid and homovanillic acid, increased in the auditory forebrain but not the auditory midbrain after 30 min of exposure to conspecific song. Our results are consistent with the hypothesis that exposure to a behaviorally relevant auditory stimulus rapidly induces CA activity, which may play a role in auditory responses.

  14. Promzea: a pipeline for discovery of co-regulatory motifs in maize and other plant species and its application to the anthocyanin and phlobaphene biosynthetic pathways and the Maize Development Atlas.

    Science.gov (United States)

    Liseron-Monfils, Christophe; Lewis, Tim; Ashlock, Daniel; McNicholas, Paul D; Fauteux, François; Strömvik, Martina; Raizada, Manish N

    2013-03-15

    The discovery of genetic networks and cis-acting DNA motifs underlying their regulation is a major objective of transcriptome studies. The recent release of the maize genome (Zea mays L.) has facilitated in silico searches for regulatory motifs. Several algorithms exist to predict cis-acting elements, but none have been adapted for maize. A benchmark data set was used to evaluate the accuracy of three motif discovery programs: BioProspector, Weeder and MEME. Analysis showed that each motif discovery tool had limited accuracy and appeared to retrieve a distinct set of motifs. Therefore, using the benchmark, statistical filters were optimized to reduce the false discovery ratio, and then remaining motifs from all programs were combined to improve motif prediction. These principles were integrated into a user-friendly pipeline for motif discovery in maize called Promzea, available at http://www.promzea.org and on the Discovery Environment of the iPlant Collaborative website. Promzea was subsequently expanded to include rice and Arabidopsis. Within Promzea, a user enters cDNA sequences or gene IDs; corresponding upstream sequences are retrieved from the maize genome. Predicted motifs are filtered, combined and ranked. Promzea searches the chosen plant genome for genes containing each candidate motif, providing the user with the gene list and corresponding gene annotations. Promzea was validated in silico using a benchmark data set: the Promzea pipeline showed a 22% increase in nucleotide sensitivity compared to the best standalone program tool, Weeder, with equivalent nucleotide specificity. Promzea was also validated by its ability to retrieve the experimentally defined binding sites of transcription factors that regulate the maize anthocyanin and phlobaphene biosynthetic pathways. Promzea predicted additional promoter motifs, and genome-wide motif searches by Promzea identified 127 non-anthocyanin/phlobaphene genes that each contained all five predicted promoter

  15. Touch-screen task-element times for improving SAE recommended practice J2365 : a first proposal.

    Science.gov (United States)

    2015-10-01

    This report describes the identification of task elements and the estimation of their times for in-vehicle tasks such as dialing a phone number or finding a song using a touch screen. These : elements were derived from an experiment in which 24 drive...

  16. Genome-wide targeted prediction of ABA responsive genes in rice based on over-represented cis-motif in co-expressed genes.

    Science.gov (United States)

    Lenka, Sangram K; Lohia, Bikash; Kumar, Abhay; Chinnusamy, Viswanathan; Bansal, Kailash C

    2009-02-01

    Abscisic acid (ABA), the popular plant stress hormone, plays a key role in regulation of sub-set of stress responsive genes. These genes respond to ABA through specific transcription factors which bind to cis-regulatory elements present in their promoters. We discovered the ABA Responsive Element (ABRE) core (ACGT) containing CGMCACGTGB motif as over-represented motif among the promoters of ABA responsive co-expressed genes in rice. Targeted gene prediction strategy using this motif led to the identification of 402 protein coding genes potentially regulated by ABA-dependent molecular genetic network. RT-PCR analysis of arbitrarily chosen 45 genes from the predicted 402 genes confirmed 80% accuracy of our prediction. Plant Gene Ontology (GO) analysis of ABA responsive genes showed enrichment of signal transduction and stress related genes among diverse functional categories.

  17. Fiddler on the tree--a bush-cricket species with unusual stridulatory organs and song.

    Directory of Open Access Journals (Sweden)

    Klaus-Gerhard Heller

    Full Text Available Insects of the order Orthoptera are well-known for their acoustic communication. The structures used for this purpose show a high diversity which obviously relates to differences in song parameters and to the physics of sound production. Here we describe song and morphology of the sound producing organs of a tropical bush-cricket, Ectomoptera nepicauda, from East Africa. It has a very unusual calling song consisting of frequency-modulated, pure-tone sounds in the high ultrasonic range of 80 to 120 kHz and produced by extremely fast wing movements. Concerning morphology, it represents the most extreme state in the degree of left-right fore-wing differentiation found among Orthoptera: the acoustic parts of the left fore-wing consist exclusively of the stridulatory file, comparable in function to the bow of a violin, while the right wing carries only the plectrum ( =  string and mirror ( =  soundbox.

  18. Rules of song development and their use in vocal interactions by birds with large repertoires.

    Science.gov (United States)

    Geberzahn, Nicole; Hultsch, Henrike

    2004-06-01

    Songbirds are well known for settling their disputes by vocal signals, and their singing plays a dominant role. Most studies on this issue have concentrated on bird species that develop and use small vocal repertoires. In this article we will go farther and focus on examples of how species with large song repertoires make use of their vocal competence. In particular, we will outline the study of interaction rules which have been elucidated by examining time- and pattern-specific relationships between signals exchanged by territorial neighbors. First we present an inquiry into the rules of song learning and development. In birds with large song repertoires, the ontogeny of such rules proceeds along a number of trajectories which help in understanding the often remarkable accomplishments of adult birds. In both approaches, our model species will be the Common Nightingale Luscinia megarhynchos that has been investigated intensively in the field and in the laboratory.

  19. The Effectiveness of Song Technique in Teaching Paper Based TOEFL (PBT’S Listening Comprehension Section

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    Heri Kuswoyo

    2013-07-01

    Full Text Available Among three sections that follow the Paper-Based TOEFL (PBT, many test takers find listening comprehension section is the most difficult. Thus, in this research the researcher aims to explore how students learn PBT’s listening comprehension section effectively through song technique. This sounds like a more interesting and engaging way to learn language because music is a very powerful motivational tool for learning language. To reach the goal of this study, the researcher applied the grammar approach. It is an appropriate approach since the main idea of grammar-based listening exercises is to analyze the language by its components and reconstruct an incomplete text. Besides, the researcher employed an English song as the media the researcher uses the top- down model for the Listening Process.  In this research, the writer tries to share his experience in teaching listening in English department of Teknokrat College by implementing song technique.

  20. Fiddler on the Tree - A Bush-Cricket Species with Unusual Stridulatory Organs and Song

    Science.gov (United States)

    Heller, Klaus-Gerhard; Hemp, Claudia

    2014-01-01

    Insects of the order Orthoptera are well-known for their acoustic communication. The structures used for this purpose show a high diversity which obviously relates to differences in song parameters and to the physics of sound production. Here we describe song and morphology of the sound producing organs of a tropical bush-cricket, Ectomoptera nepicauda, from East Africa. It has a very unusual calling song consisting of frequency-modulated, pure-tone sounds in the high ultrasonic range of 80 to120 kHz and produced by extremely fast wing movements. Concerning morphology, it represents the most extreme state in the degree of left-right fore-wing differentiation found among Orthoptera: the acoustic parts of the left fore-wing consist exclusively of the stridulatory file, comparable in function to the bow of a violin, while the right wing carries only the plectrum ( =  string) and mirror ( =  soundbox). PMID:24643071

  1. American Minimalism: The Western Vernacular in Norman Mailer’s The Executioner’s Song.

    Directory of Open Access Journals (Sweden)

    Andrew Wilson

    2009-05-01

    Full Text Available This paper identifies and discusses the western vernacular and minimalist tendencies in Norman Mailer’s 1980 Pulitzer Prize winning “true-life story” The Executioner’s Song.  Mailer’s use of a lean, often flat style of narration is read in relation to Truman Capote’s “non-fiction novel” In Cold Blood to measure the extent to which Mailer moved beyond a conventional novelistic approach. The article positions The Executioner’s Song alongside earlier minimalist styles in American Literature and takes stock of Mailer’s use of oral storytelling techniques and panoramic perspectives. Mailer’s minimal presence in the narrative and the original capital punishment proceedings is established, with support from early reviews, debates surrounding the genre of The Executioner’s Song and interviews given by the author since its publication in 1979.

  2. Phyloproteomic Analysis of 11780 Six-Residue-Long Motifs Occurrences

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    O. V. Galzitskaya

    2015-01-01

    Full Text Available How is it possible to find good traits for phylogenetic reconstructions? Here, we present a new phyloproteomic criterion that is an occurrence of simple motifs which can be imprints of evolution history. We studied the occurrences of 11780 six-residue-long motifs consisting of two randomly located amino acids in 97 eukaryotic and 25 bacterial proteomes. For all eukaryotic proteomes, with the exception of the Amoebozoa, Stramenopiles, and Diplomonadida kingdoms, the number of proteins containing the motifs from the first group (one of the two amino acids occurs once at the terminal position made about 20%; in the case of motifs from the second (one of two amino acids occurs one time within the pattern and third (the two amino acids occur randomly groups, 30% and 50%, respectively. For bacterial proteomes, this relationship was 10%, 27%, and 63%, respectively. The matrices of correlation coefficients between numbers of proteins where a motif from the set of 11780 motifs appears at least once in 9 kingdoms and 5 phyla of bacteria were calculated. Among the correlation coefficients for eukaryotic proteomes, the correlation between the animal and fungi kingdoms (0.62 is higher than between fungi and plants (0.54. Our study provides support that animals and fungi are sibling kingdoms. Comparison of the frequencies of six-residue-long motifs in different proteomes allows obtaining phylogenetic relationships based on similarities between these frequencies: the Diplomonadida kingdoms are more close to Bacteria than to Eukaryota; Stramenopiles and Amoebozoa are more close to each other than to other kingdoms of Eukaryota.

  3. Musical skill in dementia: a violinist presumed to have Alzheimer's disease learns to play a new song.

    Science.gov (United States)

    Cowles, Anne; Beatty, William W; Nixon, Sara Jo; Lutz, Lanna J; Paulk, Jason; Paulk, Kayla; Ross, Elliott D

    2003-12-01

    Previous studies have described patients with possible or probable Alzheimer's disease (AD) who continued to play familiar songs skillfully, despite their dementias. There are no reports about patients with dementia who successfully learned to play new songs, and two papers describe failures of patients with AD to learn to play a new song although they continued to play familiar songs competently. In the present paper we describe a moderately demented patient (SL) with probable AD who learned to play a song (Cossackaya!) on the violin that was published after the apparent onset of his dementia. He showed modest retention of the song at delays of 0 and 10 minutes. This contrasts with his profound disturbance in both recall and recognition on other anterograde memory tests (word lists, stories, figures, environmental sounds, sounds of musical instruments), and marked impairment on measures of remote memory (famous faces, autobiographical memory). SL showed milder deficits in confrontation naming, verbal fluency and attention, but no dyspraxia or aphasic comprehension deficits. Except for the Block Design test, his visuospatial skills were intact. SL's learning of the new song in the absence of any evidence of episodic memory is reminiscent of patients with temporal lobe amnesia who show better memory for song melody than for lyrics or verse, although his retention was not as good.

  4. Identification and characterization of a selenoprotein family containing a diselenide bond in a redox motif

    Science.gov (United States)

    Shchedrina, Valentina A.; Novoselov, Sergey V.; Malinouski, Mikalai Yu.; Gladyshev, Vadim N.

    2007-01-01

    Selenocysteine (Sec, U) insertion into proteins is directed by translational recoding of specific UGA codons located upstream of a stem-loop structure known as Sec insertion sequence (SECIS) element. Selenoproteins with known functions are oxidoreductases containing a single redox-active Sec in their active sites. In this work, we identified a family of selenoproteins, designated SelL, containing two Sec separated by two other residues to form a UxxU motif. SelL proteins show an unusual occurrence, being present in diverse aquatic organisms, including fish, invertebrates, and marine bacteria. Both eukaryotic and bacterial SelL genes use single SECIS elements for insertion of two Sec. In eukaryotes, the SECIS is located in the 3′ UTR, whereas the bacterial SelL SECIS is within a coding region and positioned at a distance that supports the insertion of either of the two Sec or both of these residues. SelL proteins possess a thioredoxin-like fold wherein the UxxU motif corresponds to the catalytic CxxC motif in thioredoxins, suggesting a redox function of SelL proteins. Distantly related SelL-like proteins were also identified in a variety of organisms that had either one or both Sec replaced with Cys. Danio rerio SelL, transiently expressed in mammalian cells, incorporated two Sec and localized to the cytosol. In these cells, it occurred in an oxidized form and was not reducible by DTT. In a bacterial expression system, we directly demonstrated the formation of a diselenide bond between the two Sec, establishing it as the first diselenide bond found in a natural protein. PMID:17715293

  5. Pierced Lasso Bundles are a new class of knot-like motifs.

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    Ellinor Haglund

    2014-06-01

    Full Text Available A four-helix bundle is a well-characterized motif often used as a target for designed pharmaceutical therapeutics and nutritional supplements. Recently, we discovered a new structural complexity within this motif created by a disulphide bridge in the long-chain helical bundle cytokine leptin. When oxidized, leptin contains a disulphide bridge creating a covalent-loop through which part of the polypeptide chain is threaded (as seen in knotted proteins. We explored whether other proteins contain a similar intriguing knot-like structure as in leptin and discovered 11 structurally homologous proteins in the PDB. We call this new helical family class the Pierced Lasso Bundle (PLB and the knot-like threaded structural motif a Pierced Lasso (PL. In the current study, we use structure-based simulation to investigate the threading/folding mechanisms for all the PLBs along with three unthreaded homologs as the covalent loop (or lasso in leptin is important in folding dynamics and activity. We find that the presence of a small covalent loop leads to a mechanism where structural elements slipknot to thread through the covalent loop. Larger loops use a piercing mechanism where the free terminal plugs through the covalent loop. Remarkably, the position of the loop as well as its size influences the native state dynamics, which can impact receptor binding and biological activity. This previously unrecognized complexity of knot-like proteins within the helical bundle family comprises a completely new class within the knot family, and the hidden complexity we unraveled in the PLBs is expected to be found in other protein structures outside the four-helix bundles. The insights gained here provide critical new elements for future investigation of this emerging class of proteins, where function and the energetic landscape can be controlled by hidden topology, and should be take into account in ab initio predictions of newly identified protein targets.

  6. EEG correlates of song prosody: A new look at the relationship between linguistic and musical rhythm

    Directory of Open Access Journals (Sweden)

    Reyna L Gordon

    2011-11-01

    Full Text Available Song composers incorporate linguistic prosody into their music when setting words to melody, a process called textsetting. Composers tend to align the expected stress of the lyrics with strong metrical positions in the music. The present study was designed to explore the idea that temporal alignment helps listeners to better understand song lyrics by directing listeners’ attention to instances where strong syllables occur on strong beats. Three types of textsettings were created by aligning metronome clicks with all, some or none of the strong syllables in sung sentences. Electroencephalographic (EEG recordings were taken while participants listened to the sung sentences (primes and performed a lexical decision task on subsequent words and pseudowords (targets, presented visually. Comparison of misaligned and well-aligned sentences showed that temporal alignment between strong/weak syllables and strong/weak musical beats were associated with modulations of induced beta and evoked gamma power, which have been shown to fluctuate with rhythmic expectancies. Furthermore, targets that followed well-aligned primes elicited greater induced alpha and beta activity, and better lexical decision task performance, compared with targets that followed misaligned and varied sentences. Overall, these findings suggest that alignment of linguistic stress and musical meter in song enhances musical beat tracking and comprehension of lyrics by synchronizing neural activity with strong syllables. This approach may begin to explain the mechanisms underlying the relationship between linguistic and musical rhythm in songs, and how rhythmic attending facilitates learning and recall of song lyrics. Moreover, the observations reported here coincide with a growing number of studies reporting interactions between the linguistic and musical dimensions of song, which likely stem from shared neural resources for processing music and speech.

  7. EEG Correlates of Song Prosody: A New Look at the Relationship between Linguistic and Musical Rhythm

    Science.gov (United States)

    Gordon, Reyna L.; Magne, Cyrille L.; Large, Edward W.

    2011-01-01

    Song composers incorporate linguistic prosody into their music when setting words to melody, a process called “textsetting.” Composers tend to align the expected stress of the lyrics with strong metrical positions in the music. The present study was designed to explore the idea that temporal alignment helps listeners to better understand song lyrics by directing listeners’ attention to instances where strong syllables occur on strong beats. Three types of textsettings were created by aligning metronome clicks with all, some or none of the strong syllables in sung sentences. Electroencephalographic recordings were taken while participants listened to the sung sentences (primes) and performed a lexical decision task on subsequent words and pseudowords (targets, presented visually). Comparison of misaligned and well-aligned sentences showed that temporal alignment between strong/weak syllables and strong/weak musical beats were associated with modulations of induced beta and evoked gamma power, which have been shown to fluctuate with rhythmic expectancies. Furthermore, targets that followed well-aligned primes elicited greater induced alpha and beta activity, and better lexical decision task performance, compared with targets that followed misaligned and varied sentences. Overall, these findings suggest that alignment of linguistic stress and musical meter in song enhances musical beat tracking and comprehension of lyrics by synchronizing neural activity with strong syllables. This approach may begin to explain the mechanisms underlying the relationship between linguistic and musical rhythm in songs, and how rhythmic attending facilitates learning and recall of song lyrics. Moreover, the observations reported here coincide with a growing number of studies reporting interactions between the linguistic and musical dimensions of song, which likely stem from shared neural resources for processing music and speech. PMID:22144972

  8. The rise of author-performed song in Tuva (1921–1944

    Directory of Open Access Journals (Sweden)

    Valentina Yu. Suzukey

    2016-09-01

    Full Text Available This is a study of author-performed song in Tuva, the history of which begins when the People’s Republic of Tuva was declared in 1921. This crucial moment in the history of the region, which bore a strong influence of the October Revolution in Russia and of the following years of social change, had a profound impact on songwriting in the 1920s. The songs expressed gratitude to the October Revolution, Lenin and the Russian people for helping Tuvans get rid of the socially oppressive system (“The Glorious International”, “Freedom from Torment”, “The Great River”, “The Emergency Session of the Khural”, “No More Oppression”, etc.. New songs glorified such iconic features of new life as the first schools, the birth of national literature and the new system of writing, the change in attitude to women, the rise of the new generation of authors, the construction of a new automobile road, etc. In the 1930s further socioeconomic transformation gave rise to songs like “I Am a Kolkhoz Member”; “The Tractor Driver”, “The Propagandist”, “The Beautiful Soviet Land”, etc. By the end of the 1930s Tuva got its first amateur composers and author-performed songs. The arrival of theater, dance and music professionals from the USSR at the beginning of the 1940s at the bequest of PRT’s government led to a sea change in professionalization of Tuvan performing arts. In 1951 A. Chyrgal-ool became the first Tuvan student to join a conservatoire in Kazan which he graduated from in 1957. His works composed in 1950s marked a new stage in the rise of professional music in the region. Thus Tuvan song art featured almost the same trends and developments as most other ethnic groups in the Soviet Union.

  9. EEG Correlates of Song Prosody: A New Look at the Relationship between Linguistic and Musical Rhythm.

    Science.gov (United States)

    Gordon, Reyna L; Magne, Cyrille L; Large, Edward W

    2011-01-01

    Song composers incorporate linguistic prosody into their music when setting words to melody, a process called "textsetting." Composers tend to align the expected stress of the lyrics with strong metrical positions in the music. The present study was designed to explore the idea that temporal alignment helps listeners to better understand song lyrics by directing listeners' attention to instances where strong syllables occur on strong beats. Three types of textsettings were created by aligning metronome clicks with all, some or none of the strong syllables in sung sentences. Electroencephalographic recordings were taken while participants listened to the sung sentences (primes) and performed a lexical decision task on subsequent words and pseudowords (targets, presented visually). Comparison of misaligned and well-aligned sentences showed that temporal alignment between strong/weak syllables and strong/weak musical beats were associated with modulations of induced beta and evoked gamma power, which have been shown to fluctuate with rhythmic expectancies. Furthermore, targets that followed well-aligned primes elicited greater induced alpha and beta activity, and better lexical decision task performance, compared with targets that followed misaligned and varied sentences. Overall, these findings suggest that alignment of linguistic stress and musical meter in song enhances musical beat tracking and comprehension of lyrics by synchronizing neural activity with strong syllables. This approach may begin to explain the mechanisms underlying the relationship between linguistic and musical rhythm in songs, and how rhythmic attending facilitates learning and recall of song lyrics. Moreover, the observations reported here coincide with a growing number of studies reporting interactions between the linguistic and musical dimensions of song, which likely stem from shared neural resources for processing music and speech.

  10. Syringeal specialization of frequency control during song production in the Bengalese finch (Lonchura striata domestica.

    Directory of Open Access Journals (Sweden)

    Kristen R Secora

    Full Text Available Singing in songbirds is a complex, learned behavior which shares many parallels with human speech. The avian vocal organ (syrinx has two potential sound sources, and each sound generator is under unilateral, ipsilateral neural control. Different songbird species vary in their use of bilateral or unilateral phonation (lateralized sound production and rapid switching between left and right sound generation (interhemispheric switching of motor control. Bengalese finches (Lonchura striata domestica have received considerable attention, because they rapidly modify their song in response to manipulations of auditory feedback. However, how the left and right sides of the syrinx contribute to acoustic control of song has not been studied.Three manipulations of lateralized syringeal control of sound production were conducted. First, unilateral syringeal muscular control was eliminated by resection of the left or right tracheosyringeal portion of the hypoglossal nerve, which provides neuromuscular innervation of the syrinx. Spectral and temporal features of song were compared before and after lateralized nerve injury. In a second experiment, either the left or right sound source was devoiced to confirm the role of each sound generator in the control of acoustic phonology. Third, air pressure was recorded before and after unilateral denervation to enable quantification of acoustic change within individual syllables following lateralized nerve resection.These experiments demonstrate that the left sound source produces louder, higher frequency, lower entropy sounds, and the right sound generator produces lower amplitude, lower frequency, higher entropy sounds. The bilateral division of labor is complex and the frequency specialization is the opposite pattern observed in most songbirds. Further, there is evidence for rapid interhemispheric switching during song production. Lateralized control of song production in Bengalese finches may enhance acoustic

  11. What Is That Song? : Aleksej Balabanov's Brother and Rock as Film Music in Russian Cinema

    OpenAIRE

    Österberg, Ira

    2018-01-01

    This dissertation examines the role of rock songs as film music in Russian cinema and how one important film, Aleksej Balabanov’s Brother (Brat, 1997), reshaped film music conventions in the 1990s. The study is divided into two sections: the first is a historical examination of more than twenty films made between the late 1920s and the early 1990s, the second focuses on Brother and its use of music. The research questions are 1) How is music used in Brother? 2) How were rock songs used in...

  12. The Interpretation Of Metaphor Found In 20 Songs Of Taylor Swift

    OpenAIRE

    Desriani, Shella

    2015-01-01

    This paper entitled The interpretation of metaphor found in 20 of taylor swift. this paper discuss the types and meaning of metaphor in the lyrics of the song taylor swift. The purpose of this paper is to analyze types of metaphor in the form of simile, personification and hyperbole contained in the lyrics of the song taylor swift. In this paper the authors wrote the paper used the method of literature, collect some data from some books, and the internet. the lyric which contained metaphors i...

  13. Observations of the radial velocity of the Sun as measured with the novel SONG spectrograph

    DEFF Research Database (Denmark)

    Pallé, P. L.; Grundahl, F.; Hage, A. Triviño

    2013-01-01

    Deployment of the prototype node of the SONG project took place in April 2012 at Observatorio del Teide (Canary Islands). Its key instrument (echelle spectrograph) was installed and operational a few weeks later while its 1 m feeding telescope suffered a considerable delay to meet the required...... specifications. Using a fibre-feed, solar light could be fed to the spectrograph and we carried out a 1-week observing campaign in June 2012 to evaluate its performance for measuring precision radial velocities. In this work we present the first results of this campaign by comparing the sensitivity of the SONG...

  14. Moths produce extremely quiet ultrasonic courtship songs by rubbing specialized scales

    DEFF Research Database (Denmark)

    Nakano, Ryo; Skals, Niels; Takanashi, Takuma

    2008-01-01

    level at 1 cm) adapted for private sexual communication in the Asian corn borer moth, Ostrinia furnacalis. During courtship, the male rubs specialized scales on the wing against those on the thorax to produce the songs, with the wing membrane underlying the scales possibly acting as a sound resonator....... The male's song suppresses the escape behavior of the female, thereby increasing his mating success. Our discovery of extremely low-intensity ultrasonic communication may point to a whole undiscovered world of private communication, using "quiet" ultrasound....

  15. The Role of Songs in First-Graders’ Oral Communication Development in English

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    Ivon Aleida Castro Huertas

    2014-04-01

    Full Text Available We report on an action research project aimed at developing oral communication in first-graders, using songs as a strategy for young learners to use and enjoy English. It was developed at a Colombian public school over three months. The teacher-researchers attempted to encourage students using simple and amusing songs to help them learn new vocabulary in English and develop oral skills from the very moment they began their literacy process. In this article, we attempt to share our findings obtained from data collected through direct observation, field notes, video recordings, and interviews that show the process followed by very young learners to acquire vocabulary by singing.

  16. Frontal lobe neurodegeneration - Use of songs in the music therapy setting

    DEFF Research Database (Denmark)

    Ridder, Hanne Mette Ochsner

    2005-01-01

    .g. in vascular or frontotemporal dementia) it is difficult to avoid secondary symptoms of the brain damage that is caused by missing communicative abilities and difficulties in fulfilment of psychosocial needs. Songs are used to build up the music therapy setting with this client group. The songs function......When the frontal lobes are damaged by neurodegeneration certain qualities of psychosocial functioning are changed. The person might show lack of initiative, poor social judgment, and loss of personal and social awareness. When these symptoms co-occur with other cortical degeneration (e...

  17. Mössbauer study of the Ru porcelain of Chinese Song Dynasty and Yuan Dynasty

    Science.gov (United States)

    Zhengyao, Gao; Songhua, Chen; Xiande, Chen

    1994-12-01

    The Mössbauer spectra from the glazes of the Song Dynasty and the Yuan Dynasty Ru porcelains and the imitative ancient Ru porcelain are compared and analyzed. It is determined that the original firing atmosphere of the Yuan Dynasty Ru porcelain was reductive. The firing temperature was 1250±20 ‡C. The original firing atmosphere of the Song Dynasty Ru porcelain was also reductive; the firing temperature was above 1200 ‡C. The coloring mechanism of these glazes is discussed.

  18. Functional structural motifs for protein-ligand, protein-protein, and protein-nucleic acid interactions and their connection to supersecondary structures.

    Science.gov (United States)

    Kinjo, Akira R; Nakamura, Haruki

    2013-01-01

    Protein functions are mediated by interactions between proteins and other molecules. One useful approach to analyze protein functions is to compare and classify the structures of interaction interfaces of proteins. Here, we describe the procedures for compiling a database of interface structures and efficiently comparing the interface structures. To do so requires a good understanding of the data structures of the Protein Data Bank (PDB). Therefore, we also provide a detailed account of the PDB exchange dictionary necessary for extracting data that are relevant for analyzing interaction interfaces and secondary structures. We identify recurring structural motifs by classifying similar interface structures, and we define a coarse-grained representation of supersecondary structures (SSS) which represents a sequence of two or three secondary structure elements including their relative orientations as a string of four to seven letters. By examining the correspondence between structural motifs and SSS strings, we show that no SSS string has particularly high propensity to be found interaction interfaces in general, indicating any SSS can be used as a binding interface. When individual structural motifs are examined, there are some SSS strings that have high propensity for particular groups of structural motifs. In addition, it is shown that while the SSS strings found in particular structural motifs for nonpolymer and protein interfaces are as abundant as in other structural motifs that belong to the same subunit, structural motifs for nucleic acid interfaces exhibit somewhat stronger preference for SSS strings. In regard to protein folds, many motif-specific SSS strings were found across many folds, suggesting that SSS may be a useful description to investigate the universality of ligand binding modes.

  19. Solution structure of a DNA mimicking motif of an RNA aptamer against transcription factor AML1 Runt domain.

    Science.gov (United States)

    Nomura, Yusuke; Tanaka, Yoichiro; Fukunaga, Jun-ichi; Fujiwara, Kazuya; Chiba, Manabu; Iibuchi, Hiroaki; Tanaka, Taku; Nakamura, Yoshikazu; Kawai, Gota; Kozu, Tomoko; Sakamoto, Taiichi

    2013-12-01

    AML1/RUNX1 is an essential transcription factor involved in the differentiation of hematopoietic cells. AML1 binds to the Runt-binding double-stranded DNA element (RDE) of target genes through its N-terminal Runt domain. In a previous study, we obtained RNA aptamers against the AML1 Runt domain by systematic evolution of ligands by exponential enrichment and revealed that RNA aptamers exhibit higher affinity for the Runt domain than that for RDE and possess the 5'-GCGMGNN-3' and 5'-N'N'CCAC-3' conserved motif (M: A or C; N and N' form Watson-Crick base pairs) that is important for Runt domain binding. In this study, to understand the structural basis of recognition of the Runt domain by the aptamer motif, the solution structure of a 22-mer RNA was determined using nuclear magnetic resonance. The motif contains the AH(+)-C mismatch and base triple and adopts an unusual backbone structure. Structural analysis of the aptamer motif indicated that the aptamer binds to the Runt domain by mimicking the RDE sequence and structure. Our data should enhance the understanding of the structural basis of DNA mimicry by RNA molecules.

  20. Degradation of male and female rufous-and-white wren songs in a tropical forest: effects of sex, perch height, and habitat

    DEFF Research Database (Denmark)

    Barker, Nicole K.S.; Dabelsteen, Torben; Mennill, Daniel J.

    2009-01-01

    We performed a song transmission experiment to investigate the effects of distance, song post height, receiver perch height, signaller sex, and microhabitat on song degradation in rufous-and-white wrens (Thryothorus rufalbus), a neotropical duetting songbird. We quantified the effects of these fa......We performed a song transmission experiment to investigate the effects of distance, song post height, receiver perch height, signaller sex, and microhabitat on song degradation in rufous-and-white wrens (Thryothorus rufalbus), a neotropical duetting songbird. We quantified the effects...... of these factors on excess attenuation, signal-to-noise ratio, tail-to-signal ratio, and blur ratio of male and female songs. As expected, song degradation increased with distance between signaller and receiver. Songs transmitted best when emitted from moderate heights (5-7 m), although this pattern varied....... Rufous-and-white wren songs appeared more attenuated in open field than forest habitats, but microhabitat conditions within the forests exerted a strong influence on song degradation. These findings match previous studies showing an effect of distance, song post height, and habitat, but contrast...

  1. Binding properties of SUMO-interacting motifs (SIMs) in yeast.

    Science.gov (United States)

    Jardin, Christophe; Horn, Anselm H C; Sticht, Heinrich

    2015-03-01

    Small ubiquitin-like modifier (SUMO) conjugation and interaction play an essential role in many cellular processes. A large number of yeast proteins is known to interact non-covalently with SUMO via short SUMO-interacting motifs (SIMs), but the structural details of this interaction are yet poorly characterized. In the present work, sequence analysis of a large dataset of 148 yeast SIMs revealed the existence of a hydrophobic core binding motif and a preference for acidic residues either within or adjacent to the core motif. Thus the sequence properties of yeast SIMs are highly similar to those described for human. Molecular dynamics simulations were performed to investigate the binding preferences for four representative SIM peptides differing in the number and distribution of acidic residues. Furthermore, the relative stability of two previously observed alternative binding orientations (parallel, antiparallel) was assessed. For all SIMs investigated, the antiparallel binding mode remained stable in the simulations and the SIMs were tightly bound via their hydrophobic core residues supplemented by polar interactions of the acidic residues. In contrary, the stability of the parallel binding mode is more dependent on the sequence features of the SIM motif like the number and position of acidic residues or the presence of additional adjacent interaction motifs. This information should be helpful to enhance the prediction of SIMs and their binding properties in different organisms to facilitate the reconstruction of the SUMO interactome.

  2. Cooperation of deterministic dynamics and random noise in production of complex syntactical avian song sequences: a neural network model

    Directory of Open Access Journals (Sweden)

    Yuichi eYamashita

    2011-04-01

    Full Text Available How the brain learns and generates temporal sequences is a fundamental issue in neuroscience. The production of birdsongs, a process which involves complex learned sequences, provides researchers with an excellent biological model for this topic. The Bengalese finch in particular learns a highly complex song with syntactical structure. The nucleus HVC (HVC, a premotor nucleus within the avian song system, plays a key role in generating the temporal structures of their songs. From lesion studies, the nucleus interfacialis (NIf projecting to the HVC is considered one of the essential regions that contribute to the complexity of their songs. However, the types of interaction between the HVC and the NIf that can produce complex syntactical songs remain unclear. In order to investigate the function of interactions between the HVC and NIf, we have proposed a neural network model based on previous biological evidence. The HVC is modeled by a recurrent neural network (RNN that learns to generate temporal patterns of songs. The NIf is modeled as a mechanism that provides auditory feedback to the HVC and generates random noise that feeds into the HVC. The model showed that complex syntactical songs can be replicated by simple interactions between deterministic dynamics of the RNN and random noise. In the current study, the plausibility of the model is tested by the comparison between the changes in the songs of actual birds induced by pharmacological inhibition of the NIf and the changes in the songs produced by the model resulting from modification of parameters representing NIf functions. The efficacy of the model demonstrates that the changes of songs induced by pharmacological inhibition of the NIf can be interpreted as a trade-off between the effects of noise and the effects of feedback on the dynamics of the RNN of the HVC. These facts suggest that the current model provides a convincing hypothesis for the functional role of NIf-HVC interaction.

  3. How pathogens use linear motifs to perturb host cell networks

    KAUST Repository

    Via, Allegra; Uyar, Bora; Brun, Christine; Zanzoni, Andreas

    2015-01-01

    Molecular mimicry is one of the powerful stratagems that pathogens employ to colonise their hosts and take advantage of host cell functions to guarantee their replication and dissemination. In particular, several viruses have evolved the ability to interact with host cell components through protein short linear motifs (SLiMs) that mimic host SLiMs, thus facilitating their internalisation and the manipulation of a wide range of cellular networks. Here we present convincing evidence from the literature that motif mimicry also represents an effective, widespread hijacking strategy in prokaryotic and eukaryotic parasites. Further insights into host motif mimicry would be of great help in the elucidation of the molecular mechanisms behind host cell invasion and the development of anti-infective therapeutic strategies.

  4. ACGT-containing abscisic acid response element (ABRE) and coupling element 3 (CE3) are functionally equivalent.

    Science.gov (United States)

    Hobo, T; Asada, M; Kowyama, Y; Hattori, T

    1999-09-01

    ACGT-containing ABA response elements (ABREs) have been functionally identified in the promoters of various genes. In addition, single copies of ABRE have been found to require a cis-acting, coupling element to achieve ABA induction. A coupling element 3 (CE3) sequence, originally identified as such in the barley HVA1 promoter, is found approximately 30 bp downstream of motif A (ACGT-containing ABRE) in the promoter of the Osem gene. The relationship between these two elements was further defined by linker-scan analyses of a 55 bp fragment of the Osem promoter, which is sufficient for ABA-responsiveness and VP1 activation. The analyses revealed that both motif A and CE3 sequence were required not only for ABA-responsiveness but also for VP1 activation. Since the sequences of motif A and CE3 were found to be similar, motif-exchange experiments were carried out. The experiments demonstrated that motif A and CE3 were interchangeable by each other with respect to both ABA and VP1 regulation. In addition, both sequences were shown to be recognized by a VP1-interacting, ABA-responsive bZIP factor TRAB1. These results indicate that ACGT-containing ABREs and CE3 are functionally equivalent cis-acting elements. Furthermore, TRAB1 was shown to bind two other non-ACGT ABREs. Based on these results, all these ABREs including CE3 are proposed to be categorized into a single class of cis-acting elements.

  5. Discovery of candidate KEN-box motifs using cell cycle keyword enrichment combined with native disorder prediction and motif conservation.

    Science.gov (United States)

    Michael, Sushama; Travé, Gilles; Ramu, Chenna; Chica, Claudia; Gibson, Toby J

    2008-02-15

    KEN-box-mediated target selection is one of the mechanisms used in the proteasomal destruction of mitotic cell cycle proteins via the APC/C complex. While annotating the Eukaryotic Linear Motif resource (ELM, http://elm.eu.org/), we found that KEN motifs were significantly enriched in human protein entries with cell cycle keywords in the UniProt/Swiss-Prot database-implying that KEN-boxes might be more common than reported. Matches to short linear motifs in protein database searches are not, per se, significant. KEN-box enrichment with cell cycle Gene Ontology terms suggests that collectively these motifs are functional but does not prove that any given instance is so. Candidates were surveyed for native disorder prediction using GlobPlot and IUPred and for motif conservation in homologues. Among >25 strong new candidates, the most notable are human HIPK2, CHFR, CDC27, Dab2, Upf2, kinesin Eg5, DNA Topoisomerase 1 and yeast Cdc5 and Swi5. A similar number of weaker candidates were present. These proteins have yet to be tested for APC/C targeted destruction, providing potential new avenues of research.

  6. Selection against spurious promoter motifs correlates withtranslational efficiency across bacteria

    Energy Technology Data Exchange (ETDEWEB)

    Froula, Jeffrey L.; Francino, M. Pilar

    2007-05-01

    Because binding of RNAP to misplaced sites could compromise the efficiency of transcription, natural selection for the optimization of gene expression should regulate the distribution of DNA motifs capable of RNAP-binding across the genome. Here we analyze the distribution of the -10 promoter motifs that bind the {sigma}{sup 70} subunit of RNAP in 42 bacterial genomes. We show that selection on these motifs operates across the genome, maintaining an over-representation of -10 motifs in regulatory sequences while eliminating them from the nonfunctional and, in most cases, from the protein coding regions. In some genomes, however, -10 sites are over-represented in the coding sequences; these sites could induce pauses effecting regulatory roles throughout the length of a transcriptional unit. For nonfunctional sequences, the extent of motif under-representation varies across genomes in a manner that broadly correlates with the number of tRNA genes, a good indicator of translational speed and growth rate. This suggests that minimizing the time invested in gene transcription is an important selective pressure against spurious binding. However, selection against spurious binding is detectable in the reduced genomes of host-restricted bacteria that grow at slow rates, indicating that components of efficiency other than speed may also be important. Minimizing the number of RNAP molecules per cell required for transcription, and the corresponding energetic expense, may be most relevant in slow growers. These results indicate that genome-level properties affecting the efficiency of transcription and translation can respond in an integrated manner to optimize gene expression. The detection of selection against promoter motifs in nonfunctional regions also implies that no sequence may evolve free of selective constraints, at least in the relatively small and unstructured genomes of bacteria.

  7. Genome Analysis of Conserved Dehydrin Motifs in Vascular Plants

    Directory of Open Access Journals (Sweden)

    Ahmad A. Malik

    2017-05-01

    Full Text Available Dehydrins, a large family of abiotic stress proteins, are defined by the presence of a mostly conserved motif known as the K-segment, and may also contain two other conserved motifs known as the Y-segment and S-segment. Using the dehydrin literature, we developed a sequence motif definition of the K-segment, which we used to create a large dataset of dehydrin sequences by searching the Pfam00257 dehydrin dataset and the Phytozome 10 sequences of vascular plants. A comprehensive analysis of these sequences reveals that lysine residues are highly conserved in the K-segment, while the amino acid type is often conserved at other positions. Despite the Y-segment name, the central tyrosine is somewhat conserved, but can be substituted with two other small aromatic amino acids (phenylalanine or histidine. The S-segment contains a series of serine residues, but in some proteins is also preceded by a conserved LHR sequence. In many dehydrins containing all three of these motifs the S-segment is linked to the K-segment by a GXGGRRKK motif (where X can be any amino acid, suggesting a functional linkage between these two motifs. An analysis of the sequences shows that the dehydrin architecture and several biochemical properties (isoelectric point, molecular mass, and hydrophobicity score are dependent on each other, and that some dehydrin architectures are overexpressed during certain abiotic stress, suggesting that they may be optimized for a specific abiotic stress while others are involved in all forms of dehydration stress (drought, cold, and salinity.

  8. BayesMD: flexible biological modeling for motif discovery

    DEFF Research Database (Denmark)

    Tang, Man-Hung Eric; Krogh, Anders; Winther, Ole

    2008-01-01

    We present BayesMD, a Bayesian Motif Discovery model with several new features. Three different types of biological a priori knowledge are built into the framework in a modular fashion. A mixture of Dirichlets is used as prior over nucleotide probabilities in binding sites. It is trained on trans......We present BayesMD, a Bayesian Motif Discovery model with several new features. Three different types of biological a priori knowledge are built into the framework in a modular fashion. A mixture of Dirichlets is used as prior over nucleotide probabilities in binding sites. It is trained...

  9. THE CORRELATION BETWEEN STUDENTS’ FREQUENCY OF LISTENING TO ENGLISH SONGS AND THEIR LISTENING ACHIEVEMENT

    Directory of Open Access Journals (Sweden)

    Elvira Rosyida M. R.

    2016-04-01

    Full Text Available This study is aimed at investigating whether there is a significant correlation between students’ frequency of listening to English songs and their listening achievement This study was conducted at the first year students of State Senior High School 9 Bandarlampung, Lampung. A descriptive quantitative was employed in this study which used ex-post facto design and the data were taken from questionnaire, semi-structured interview, and listening test. The data were analyzed by using Statistical Package for Social Science (SPSS version 16.0. The hypothesis was tested by using Pearson Product Moment Correlation Coefficient. The test result showed that there is a significant correlation between students’ frequency of listening to English songs and their listening achievement. From the result of interview, it showed that most of the students believe that by having high frequency of listening to English songs, it helps them in recognizing the spoken language and get high score in listening ability.Keywords: listening to English song, listening ability, frequency of listening

  10. Authorial and Editorial Roles in Modern Devout Song Manuscripts of the Devotio Moderna

    NARCIS (Netherlands)

    van der Poel, D.E.; de Morrée, C.V.

    2017-01-01

    This essay sets out a model which identifies eight distinct authorial and editorial roles in the transformation of oral sermons towritten collections in multi-text codices. This model is then applied to a different genre: collections of songs from the same background, the Devotio Moderna. The main

  11. Teaching and Learning Science through Song: Exploring the Experiences of Students and Teachers

    Science.gov (United States)

    Governor, Donna; Hall, Jori; Jackson, David

    2013-01-01

    This qualitative, multi-case study explored the use of science-content music for teaching and learning in six middle school science classrooms. The researcher sought to understand how teachers made use of content-rich songs for teaching science, how they impacted student engagement and learning, and what the experiences of these teachers and…

  12. A Study of Ben Okri's Songs of Enchantment and Infinite Riches

    African Journals Online (AJOL)

    DrNneka

    its values as the quality of its contribution to man's freedom” (Qtd. in Onuekwusi ... the faces of three white women with disheveled blonde hair and dolphine eyes and .... In Songs of Enchantment, Dad single-handedly fights vices in the society.

  13. Maskandi : A critical discourse analysis of indigenous isiZulu songs ...

    African Journals Online (AJOL)

    The main finding of the analysis is that the reported song reveals a number of sociocultural themes relating to ways of knowing in indigenous literacy systems. These include use of metaphoric expressions, call-and-response patterns, repetition, indirection, interactive and group dynamics that are general, yet particular, ...

  14. A PHONETIC CONTRASTIVE ANALYSIS OF ENGLISH WORDS IN THREE JAPANESE SONGS BY AKB48

    Directory of Open Access Journals (Sweden)

    Harwintha Y. Anjarningsih

    2016-04-01

    Full Text Available Many studies have revealed how Japanese speakers pronounce English words differently. However, not much research has explained the causes of the difference, let alone relating such difference with native language interference. By drawing a comparison between the sound structures of the English and Japanese languages using Contrastive Analysis Hypothesis (CAH, we will see how native language may influence foreign language usage and cause pronunciation differences in popular songs. Transcriptions of three AKB48’s songs – Heavy Rotation, Sugar Rush, and Namida Surprise – will be used as the data sources to determine native language interference. Our findings show that additions of vowel sounds, changes of syllable, changes of height and place of vowel articulation, replacements of a consonant with another consonant, and elisions of consonants happened to the English words across the three songs. These phonetic changes should inform discussions about the relationship between lyrics and melody in songs that incorporate two or more languages (i.e., bilingual.

  15. Let's Bring Back the Magic of Song for Teaching Reading

    Science.gov (United States)

    Iwasaki, Becky; Rasinski, Timothy; Yildirim, Kasim; Zimmerman, Belinda S.

    2013-01-01

    Based on a first grade teacher's search for approaches to promote successful reading acquisition in her first grade classroom, the authors present a curricular engagement in which the teacher explored using music, specifically singing songs, as a fun and motivating way to accelerate reading progress. The premise is that singing (while at the…

  16. Three Local "Arirang" Songs as Models for Teaching Korean Music in the Classroom

    Science.gov (United States)

    Park, Young Joo

    2013-01-01

    This article provides guidance for music teachers who want to introduce Korean folk music to their students. It introduces "Arirang"--both a specific folk song and a category--and describes three different versions: the "Miryang Arirang," the "Jindo Arirang," and the "Gyeonggi Arirang." The…

  17. Song Recognition without Identification: When People Cannot "Name that Tune" but Can Recognize It as Familiar

    Science.gov (United States)

    Kostic, Bogdan; Cleary, Anne M.

    2009-01-01

    Recognition without identification (RWI) is a common day-to-day experience (as when recognizing a face or a tune as familiar without being able to identify the person or the song). It is also a well-established laboratory-based empirical phenomenon: When identification of recognition test items is prevented, participants can discriminate between…

  18. Preschoolers' Recall of Science Content from Educational Videos Presented with and without Songs

    Science.gov (United States)

    Schechter, Rachel L.

    2013-01-01

    This experimental investigation evaluated the impact of educational songs on a child's ability to recall scientific content from an educational television program. Preschoolers' comprehension of the educational content was examined by measuring children's ability to recall the featured science content (the function of a pulley and…

  19. Bird brains and songs : Neural mechanisms of auditory memory and perception in zebra finches

    NARCIS (Netherlands)

    Gobes, S.M.H.|info:eu-repo/dai/nl/304832669

    2009-01-01

    Songbirds, such as zebra finches, learn their songs from a ‘tutor’ (usually the father), early in life. There are strong parallels between the behavioural, cognitive and neural processes that underlie vocal learning in humans and songbirds. In both cases there is a sensitive period for auditory

  20. A Chroma-based Tempo-insensitive Distance Measure for Cover Song Identification

    DEFF Research Database (Denmark)

    Jensen, Jesper Højvang; Ellis, Dan P. W.; Christensen, Mads Græsbøll

    In the context of music, a cover version is a remake of a song, often with significant stylistic variation. In this paper we describe a distance measure between sampled audio files that is designed to be insensitive to instrumentation, time shift, temporal scaling and transpositions. The algorithm...

  1. Simulacra and simulation: double simulation at a North Song Dynasty theme park

    NARCIS (Netherlands)

    Ong, C.E.; Jin, Ge

    2017-01-01

    This paper examines an unusual type of ‘cultural theme park’, one that is not based on simulating existing cultural diversity or historical places, but based in some senses on a ‘double simulation’. The theme park is based on an historical painting assumed to represent the North Song Dynasty period

  2. Songs as Sources of Ijebu-Ode Fashion History | Akinwumi | Journal ...

    African Journals Online (AJOL)

    ... glimpses of the state of the art of fabrics of those times. This espousal of textile technology is a significant aspect of costume history. On the whole, the paper has demonstrated the potential of the content of indigenous songs as sources of dress-fabric, fashion trends and event-dress in their wider socio-cultural contexts.

  3. Using Songs as Audio Materials in Teaching Turkish as a Foreign Language

    Science.gov (United States)

    Keskin, Funda

    2011-01-01

    The use of songs as audio materials in teaching Turkish as foreign language is an important part of language culture and has an important place in culture. Thus, the transfer of cultural aspects accelerates language learning process. In the light of this view, it becomes necessary to transfer cultural aspects into classroom environment in teaching…

  4. Divergence in male cricket song and female preference functions in three allopatric sister species.

    Science.gov (United States)

    Hennig, Ralf Matthias; Blankers, Thomas; Gray, David A

    2016-05-01

    Multivariate female preference functions for male sexual signals have rarely been investigated, especially in a comparative context among sister species. Here we examined male signal and female preference co-variation in three closely related, but allopatric species of Gryllus crickets and quantified male song traits as well as female preferences. We show that males differ conspicuously in either one of two relatively static song traits, carrier frequency or pulse rate; female preference functions for these traits also differed, and would in combination enhance species discrimination. In contrast, the relatively dynamic song traits, chirp rate and chirp duty cycle, show minimal divergence among species and relatively greater conservation of female preference functions. Notably, among species we demonstrate similar mechanistic rules for the integration of pulse and chirp time scales, despite divergence in pulse rate preferences. As these are allopatric taxa, selection for species recognition per se is unlikely. More likely sexual selection combined with conserved properties of preference filters enabled divergent coevolution of male song and female preferences.

  5. Digital Games, Songs and Flashcards and their Effects on Vocabulary Knowledge of Iranian Preschoolers

    Directory of Open Access Journals (Sweden)

    Mahboubeh Taghizadeh

    2018-01-01

    Full Text Available The study aimed to investigate (a the effect of digital games, songs, and flashcards on vocabulary knowledge of Iranian EFL preschool learners and (b the young learners‟ performance on mid-course tests of vocabulary with different topics. The participants included 350 preschool female learners in Oshnaviyeh, a town in Western Azarbaijan Province and were divided into three tablet, song, and traditional groups. Pre and post-tests of vocabulary and four mid-course tests based, on the learnt vocabularies, were administered during the research. The materials also consisted of a digital game, 16 songs, a structured student book, a workbook, and 60 flashcards. The analysis of the data revealed that there was no significant difference in the vocabulary knowledge of preschool learners who learnt vocabularies via games, songs, and flashcards. The results also showed that there was a significant difference in the three groups‟ mid-course tests with different topics. The findings recommend that using different techniques in the classroom considering learners‟ interest and needs can improve vocabulary knowledge of young learners.

  6. Dinaka/kiba: A descriptive analysis of a Northern Sotho song-dance ...

    African Journals Online (AJOL)

    A disjuncture in the description of persists between practitioners of the genre, deemed custodians of Northern Sotho culture, and some scholars. Drawing from extensive fieldwork and ... song-dance performative compound. Keywords: Indigenous music, African drumming, African performance, African folklore, African dance.

  7. The effect of preferred music genre selection versus preferred song selection on experimentally induced anxiety levels.

    Science.gov (United States)

    Walworth, Darcy DeLoach

    2003-01-01

    The purpose of this study was to investigate the differences of experimentally induced anxiety levels reached by subjects listening to no music (n = 30), subjects listening to music selected by the experimenter from the subject's preferred genre or artist listed as relaxing (n = 30), and subjects listening to a specific song they listed as relaxing (n = 30). Subjects consisted of 90 individuals, male and female, randomly assigned to one of the three groups mentioned above. Subjects in either music group filled out a questionnaire prior to participating in the study indicating their preference of music used for relaxation purposes. Subjects in Experimental Group 1 marked their preferred genres and/or artists, and Experimental Group 2 marked specific songs used for relaxation purposes. While the experimenter hypothesized subjects in Experimental Group 2 would show less anxiety than both the control group and Experimental Group 1, there were no significant differences found between the 2 music groups in anxiety levels reached. However, there was a statistically significant difference between the no music control group and both music groups in the anxiety level reached by subjects. Subjects listening to music, both songs chosen by the experimenter and subject selected songs, showed significantly less anxiety than subjects not listening to music.

  8. Songs and Verses of New Ethnicities: Resistance and Representation in Black British Culture

    Directory of Open Access Journals (Sweden)

    Francesco Cattani

    2015-11-01

    Proprio dopo questa polemica, non a caso, saranno pubblicati due testi centrali alla storia culturale della black Britain: “New Ethnicities” (1988 di Stuart Hall e The Satanic Verses (1988 di Salman Rushdie, in cui sembrano confluire in parte le riflessioni generate dalla visione di Handsworth Songs, che porteranno a una fondamentale ri-definizione e re-visione della blackness.

  9. Children’s identification of familiar songs from pitch and timing cues

    Directory of Open Access Journals (Sweden)

    Anna eVolkova

    2014-08-01

    Full Text Available The goal of the present study was to ascertain whether children with normal hearing and prelingually deaf children with cochlear implants could use pitch or timing cues alone or in combination to identify familiar songs. Children 4-7 years of age were required to identify the theme songs of familiar TV shows in a simple task with excerpts that preserved (1 the relative pitch and timing cues of the melody but not the original instrumentation, (2 the timing cues only (rhythm, meter, and tempo, and (3 the relative pitch cues only (pitch contour and intervals. Children with normal hearing performed at high levels and comparably across the three conditions. The performance of child implant users was well above chance levels when both pitch and timing cues were available, marginally above chance with timing cues only, and at chance with pitch cues only. This is the first demonstration that children can identify familiar songs from monotonic versions—timing cues but no pitch cues—and from isochronous versions—pitch cues but no timing cues. The study also indicates that, in the context of a very simple task, young implant users readily identify songs from melodic versions that preserve pitch and timing cues.

  10. Are high perches in the blackcap Sylvia atricapilla song or listening posts? A sound transmission study

    DEFF Research Database (Denmark)

    Mathevon, Nicolas; Dabelsteen, Torben; Blumenrath, Sandra Helene

    2005-01-01

    Birds often sing from high perches referred to as song posts. However, birds also listen and keep a lookout from these perches. We used a sound transmission experiment to investigate the changes for receiving and sending conditions that a territorial songbird may experience by moving upwards...

  11. Singing Songs as a Creative Method for Narrative Inquiry in the English Classroom

    Science.gov (United States)

    Riddle, Stewart

    2015-01-01

    Narrative inquiry has a long tradition in qualitative educational research, although it remains a relatively untapped method of investigation in English curriculum and pedagogy studies. This paper presents one experimental narrative approach through the use of song lyrics as a musical method for storying interview data. Working with non-linear and…

  12. Rethinking our assumptions about the evolution of bird song and other sexually dimorphic signals

    Directory of Open Access Journals (Sweden)

    J. Jordan Price

    2015-04-01

    Full Text Available Bird song is often cited as a classic example of a sexually-selected ornament, in part because historically it has been considered a primarily male trait. Recent evidence that females also sing in many songbird species and that sexual dimorphism in song is often the result of losses in females rather than gains in males therefore appears to challenge our understanding of the evolution of bird song through sexual selection. Here I propose that these new findings do not necessarily contradict previous research, but rather they disagree with some of our assumptions about the evolution of sexual dimorphisms in general and female song in particular. These include misconceptions that current patterns of elaboration and diversity in each sex reflect past rates of change and that levels of sexual dimorphism necessarily reflect levels of sexual selection. Using New World blackbirds (Icteridae as an example, I critically evaluate these past assumptions in light of new phylogenetic evidence. Understanding the mechanisms underlying such sexually dimorphic traits requires a clear understanding of their evolutionary histories. Only then can we begin to ask the right questions.

  13. Placing Music Artists and Songs in Time Using Editorial Metadata and Web Mining Techniques

    NARCIS (Netherlands)

    Bountouridis, D.; Veltkamp, R.C.; Balen, J.M.H. van

    2013-01-01

    This paper investigates the novel task of situating music artists and songs in time, thereby adding contextual information that typically correlates with an artist’s similarities, collaborations and influences. The proposed method makes use of editorial metadata in conjunction with web mining

  14. Molecular characterization of vanA-containing Enterococcus from migratory birds: song thrush (Turdus philomelos

    Directory of Open Access Journals (Sweden)

    Nuno Silva

    2012-09-01

    Full Text Available Vancomycin-resistant enterococci (VRE were detected in two faecal samples (1.3% of song thrush in Portugal. vanA isolates showed high level vancomycin/teicoplanin resistance, as well as resistance to ciprofloxacin, quinupristin-dalfopristin and cloranfenicol. Thrush can be a reservoir of VRE and transmit these resistant bacteria to other animals including humans.

  15. Analysis of Children's Songs in Terms of Values

    Science.gov (United States)

    Keray Dinçel, Betül

    2017-01-01

    Children's songs inspire the love of music in children and improve their musical skills and at the same time, teach national values and societal rules, contribute to their personality development, make children feel happier, foster interpersonal communication and particularly contribute to the cognitive and linguistic development of children at…

  16. Geography, culture, and religion: Explaining the bias in Eurovision song contest voting

    NARCIS (Netherlands)

    Spierdijk, L.; Vellekoop, M.H.

    This paper analyses votes cast in the Eurovision Song Contest in the period 1975 - 2003. We test whether accusations of 'political' voting among participants can be substantiated by looking at geographical influences. Our approach differs in two ways from earlier studies. First, we take into account

  17. Values of Youth: Messages from the Most Popular Songs of Four Decades.

    Science.gov (United States)

    Ostlund, Deborah R.; Kinnier, Richard T.

    1997-01-01

    Analyzed the lyrics of the 100 most popular songs in America from the 1950s to the 1980s to assess their value themes. Extracted nine value themes: romantic love, celebration, humanitarianism, antiestablishmentarianism, friendship, patriotism, narcissism, self-esteem, and nostalgia. Romantic love, particularly that of "innocent" young…

  18. A population memetics approach to cultural evolution in chaffinch song: meme diversity within populations.

    Science.gov (United States)

    Lynch, A; Baker, A J

    1993-04-01

    We investigated cultural evolution in populations of common chaffinches (Fringilla coelebs) in the Atlantic islands (Azores, Madeira, Canaries) and neighboring continental regions (Morocco, Iberia) by employing a population memetics approach. To quantify variability within populations, we used the concept of a song meme, defined as a single syllable or a series of linked syllables capable of being transmitted. The frequency distribution of memes within populations generally fit a neutral model in which there is an equilibrium between mutation, migration, and drift, which suggests that memes are functionally equivalent. The diversity of memes of single syllables is significantly greater in the Azores compared to all other regions, consistent with higher population densities of chaffinches there. On the other hand, memes of two to five syllables have greater diversity in Atlantic island and Moroccan populations compared to their Iberian counterparts. This higher diversity emanates from a looser syntax and increased recombination in songs, presumably because of relaxed selection for distinctive songs in these peripheral and depauperate avifaunas. We urge comparative population memetic studies of other species of songbirds and predict that they will lead to a formulation of a general theory for the cultural evolution of bird song analogous to population genetics theory for biological traits.

  19. The Place of Igbo Folk Songs in Peace Building and Sustainable ...

    African Journals Online (AJOL)

    Igbo society provides avenues like ceremonies, festivals, and burials to mention but a few through which music are expressed. This paper among other things tries to examine the impact of folk music In Igbo culture, the place of music in the promotion of sustainable rural development. Selected Igbo folk songs with subject ...

  20. White-throated sparrows alter songs differentially in response to chorusing anurans and other background noise.

    Science.gov (United States)

    Lenske, Ariel K; La, Van T

    2014-06-01

    Animals can use acoustic signals to attract mates and defend territories. As a consequence, background noise that interferes with signal transmission has the potential to reduce fitness, especially in birds that rely on song. While much research on bird song has investigated vocal flexibility in response to urban noise, weather and other birds, the possibility of inter-class acoustic competition from anurans has not been previously studied. Using sound recordings from central Ontario wetlands, we tested if white-throated sparrows (Zonotrichia albicolis) make short-term changes to their singing behaviour in response to chorusing spring peepers (Pseudacris crucifer), as well as to car noise, wind and other bird vocalizations. White-throated sparrow songs that were sung during the spring peeper chorus were shorter with higher minimum frequencies and narrower bandwidths resulting in reduced frequency overlap. Additionally, sparrows were less likely to sing when car noise and the vocalizations of other birds were present. These patterns suggest that birds use multiple adjustment strategies. This is the first report to demonstrate that birds may alter their songs differentially in response to different sources of noise. This article is part of a Special Issue entitled: insert SI title. Copyright © 2014 Elsevier B.V. All rights reserved.

  1. Retained or lost in transmission? : Analyzing and predicting stability in Dutch folk songs

    NARCIS (Netherlands)

    Janssen, B.D.

    2018-01-01

    The goal of the dissertation is to investigate the transmission of Dutch folk songs: which parts of melodies change, and which remain stable? To this end, melodies are compared computationally, using similarity measures established in Music Information Retrieval. The computational comparison

  2. A Comparative Study on the Origin and Variety of Motifs in Shahsavan Salt Bags and Caucasian Textiles

    Directory of Open Access Journals (Sweden)

    Siamak Egharloo

    2017-12-01

    Full Text Available Shahsavan tribes of Iran and the Caucasus region have had considerable and often inevitable intercourse and associations during the history due to their common borders and special geographical locations. The result of this has been manifested in different forms of intermingled factors and elements, specifically the textiles of tribes and ethnic groups. The interactions of the mentioned realm, i.e. textile industry, have best been appeared in patterns, motifs, colors and compositions and weaving of the hand-woven textiles among which Shahsavan "salt bags" (NAMAKDᾹN are a case in point. According to the facts and the importance of this subject, we can propose some questions as follows: What influences have the field of weaving had in these two regions as a result of their interactions and historical background? What are the motifs and their classifications in these two regions and which ones share common patterns? And which ones abound? Having been done in analytical and comparative method, the present research has examined the field of weaving in Shahsavan tribe with emphasis on its salt bags together with other Caucasian textiles (salt bags, etc.. The objectives of the research have been the study of the influences and interactions between the two regions and the recognition of patterns and motifs on their textiles. Finally, we can infer that the certain location of Iran and its common borders with the Caucasus besides tribal distribution of groups in northern and southern areas could be considered the reasons for cultural influences in the mentioned regions. The dominant motifs to be noticed here are dragons (S shape, diamonds and stars, crab-like and cross motifs as well as negative and positive spaces.

  3. Positional bias of general and tissue-specific regulatory motifs in mouse gene promoters

    Directory of Open Access Journals (Sweden)

    Farré Domènec

    2007-12-01

    Full Text Available Abstract Background The arrangement of regulatory motifs in gene promoters, or promoter architecture, is the result of mutation and selection processes that have operated over many millions of years. In mammals, tissue-specific transcriptional regulation is related to the presence of specific protein-interacting DNA motifs in gene promoters. However, little is known about the relative location and spacing of these motifs. To fill this gap, we have performed a systematic search for motifs that show significant bias at specific promoter locations in a large collection of housekeeping and tissue-specific genes. Results We observe that promoters driving housekeeping gene expression are enriched in particular motifs with strong positional bias, such as YY1, which are of little relevance in promoters driving tissue-specific expression. We also identify a large number of motifs that show positional bias in genes expressed in a highly tissue-specific manner. They include well-known tissue-specific motifs, such as HNF1 and HNF4 motifs in liver, kidney and small intestine, or RFX motifs in testis, as well as many potentially novel regulatory motifs. Based on this analysis, we provide predictions for 559 tissue-specific motifs in mouse gene promoters. Conclusion The study shows that motif positional bias is an important feature of mammalian proximal promoters and that it affects both general and tissue-specific motifs. Motif positional constraints define very distinct promoter architectures depending on breadth of expression and type of tissue.

  4. Exploration of verbal and non-verbal semantic knowledge and autobiographical memories starting from popular songs in Alzheimer's disease.

    Science.gov (United States)

    Basaglia-Pappas, S; Laterza, M; Borg, C; Richard-Mornas, A; Favre, E; Thomas-Antérion, C

    2013-05-01

    In mild Alzheimer's disease (AD), a deficit in episodic memory, particularly autobiographical memory, is clearly established. Several recent studies have also shown impaired semantic memory from the onset of the disease. Musical memory capacities may be especially preserved and listening to music might encourage autobiographical recall. The aim of this study was to explore recall of popular songs in AD. We tested 12 patients with mild AD and 12 control subjects. We created a tool made up of old French popular songs: POP 10. This tool is a questionnaire composed of several subtests: melodic free recall, chorus free recall, melodic recognition, chorus recognition, semantic knowledge, autobiographical recall about the song, and autobiographical recall about the interpreter. We used non-parametric tests, the Mann-Whitney test (M-W), the Friedman test, and the a posteriori Wilcoxon test. Results of AD patients were rather similar to those of control participants for melodic memory. Concerning chorus memory (except recognition), semantic knowledge, and autobiographical recall about the interpreter, results of AD patients were significantly weaker than those of control participants. The most important result concerned autobiographical recall about the song: we found no impairment-related differences between the two groups. Our findings demonstrate that popular songs can be excellent stimuli for reminiscence, such as the ability to produce an autobiographical memory related to a song. Thus, we confirm that musical semantic knowledge associated with a song may be relatively preserved in the early stages of AD. This leads to new possibilities for cognitive stimulation.

  5. Woman Survival in Chinese Feudal Patrilineal Society: An Analysis of Song Lian's Destiny in Qi Qie Chenqun By Su Tong

    Directory of Open Access Journals (Sweden)

    Xuc Lin

    2009-05-01

    Full Text Available Article depicted woman’s difficulties in maintaining her life as well as her aggressiveness in the patrilineal society in Chinese feudal time. Article analyzed Song Lian’s bad fate. She was the main character of qi qie chenqun novel, written by Su Tong. Article analysis consisted of three parts. The first part described Song Lian’s background of life and her becoming a mistress. The second part indicated Song Lian’s attacking behavior to other woman because of defending her life. His third part analyzed some causes that made Song Lian did not survive in life. It can be concluded that the fact, Song Lian is able to be survive but she decides to be a mistress caused by both personal and o social reasons. Song Lian’s attacking other woman is caused by her anger representing her unsuccessful life. Principally, Song Lian’s failure in the feudal life is caused by her unsuccessful in becoming a respected woman. If she had been a respected woman, she would have also competed with other women in achieving a better life.      

  6. As cidades em Marguerite Duras: um estudo sobre «India song»

    Directory of Open Access Journals (Sweden)

    Adson Cristiano Bozzi Ramatis Lima

    2011-10-01

    Full Text Available Resumo: A partir de uma análise do livro escrito em 1972 por Marguerite Duras, India song, procura-se lançar luz sobre as particularidades de uma narrativa na qual o espaço tem uma importância para além de uma simples “ambientação” ficcional. Na análise, foi privilegiada a questão do espaço como o elemento formador do caráter da literatura durassiana – neste sentido, compreende-se o espaço das cidades da Índia e as suas significações como o próprio destino das personagens.Palavras-chave: Marguerite Duras; India Song; espaço. Resúmé: A partir d’une analyse du livre écrit en 1972 par Marguerite Duras, India song, on essaie de comprendre les principales caractéristiques d’une narration où l’espace joue un rôle très important. Dans l’analyse on a pris la question de l’espace comme l’élement responsable de la conformation du caratère de la littérature de Marguerite Duras – ainsi, comprendre l’espace, c’est comprendre le destin même des personnages.Mots-clés: Marguerite Duras; India song; espace.Keywords: Marguerite Duras; India song; space.

  7. Hippocampal sclerosis affects fMR-adaptation of lyrics and melodies in songs

    Directory of Open Access Journals (Sweden)

    Irene eAlonso

    2014-02-01

    Full Text Available Songs constitute a natural combination of lyrics and melodies, but it is unclear whether and how these two song components are integrated during the emergence of a memory trace. Network theories of memory suggest a prominent role of the hippocampus, together with unimodal sensory areas, in the build-up of conjunctive representations. The present study tested the modulatory influence of the hippocampus on neural adaptation to songs in lateral temporal areas. Patients with unilateral hippocampal sclerosis and healthy matched controls were presented with blocks of short songs in which lyrics and/or melodies were varied or repeated in a crossed factorial design. Neural adaptation effects were taken as correlates of incidental emergent memory traces. We hypothesized that hippocampal lesions, particularly in the left hemisphere, would weaken adaptation effects, especially the integration of lyrics and melodies. Results revealed that lateral temporal lobe regions showed weaker adaptation to repeated lyrics as well as a reduced interaction of the adaptation effects for lyrics and melodies in patients with left hippocampal sclerosis. This suggests a deficient build-up of a sensory memory trace for lyrics and a reduced integration of lyrics with melodies, compared to healthy controls. Patients with right hippocampal sclerosis showed a similar profile of results although the effects did not reach significance in this population. We highlight the finding that the integrated representation of lyrics and melodies typically shown in healthy participants is likely tied to the integrity of the left medial temporal lobe. This novel finding provides the first neuroimaging evidence for the role of the hippocampus during repetitive exposure to lyrics and melodies and their integration into a song.

  8. Sympatric song variant in mountain chickadees Poecile gambeli does not reduce aggression from black-capped chickadees Poecile atricapillus

    Directory of Open Access Journals (Sweden)

    Snell Cara L.

    2016-06-01

    Full Text Available When habitats overlap and species compete for resources, negative interactions frequently occur. Character displacement in the form of behavioural, social or morphological divergences between closely related species can act to reduce negative interactions and often arise in regions of geographic overlap. Mountain chickadees Poecile gambeli have an altered song structure in regions of geographic overlap with the behaviourally dominant black-capped chickadee Poecile atricapillus. Similar to European and Asian tits, altered song in mountain chickadees may decrease aggression from black-capped chickadees. To test this hypothesis, we conducted a playback study in Prince George, BC, Canada, to examine how black-capped chickadees responded to the songs of mountain chickadees recorded in regions where the two species were either sympatric or allopatric. We used principal component analysis (PCA to collapse behavioural response variables into a single ‘approach’ variable and a single ‘vocalisation’ variable. We then used mixed-model analysis to determine whether there was a difference in approach or vocalisation response to the two types of mountain chickadee songs (allopatric songs and variant sympatric songs. Black-capped chickadees responded with equal intensity to both types of mountain chickadee songs, suggesting that the variant mountain chickadee songs from regions of sympatry with black-capped chickadees do not reduce heterospecific aggression. To our knowledge, this is the only instance of a character shift unassociated with reduced aggression in the family Paridae and raises interesting questions about the selective pressures leading to the evolution of this song divergence.

  9. Song competition affects monoamine levels in sensory and motor forebrain regions of male Lincoln's sparrows (Melospiza lincolnii.

    Directory of Open Access Journals (Sweden)

    Kendra B Sewall

    Full Text Available Male animals often change their behavior in response to the level of competition for mates. Male Lincoln's sparrows (Melospiza lincolnii modulate their competitive singing over the period of a week as a function of the level of challenge associated with competitors' songs. Differences in song challenge and associated shifts in competitive state should be accompanied by neural changes, potentially in regions that regulate perception and song production. The monoamines mediate neural plasticity in response to environmental cues to achieve shifts in behavioral state. Therefore, using high pressure liquid chromatography with electrochemical detection, we compared levels of monoamines and their metabolites from male Lincoln's sparrows exposed to songs categorized as more or less challenging. We compared levels of norepinephrine and its principal metabolite in two perceptual regions of the auditory telencephalon, the caudomedial nidopallium and the caudomedial mesopallium (CMM, because this chemical is implicated in modulating auditory sensitivity to song. We also measured the levels of dopamine and its principal metabolite in two song control nuclei, area X and the robust nucleus of the arcopallium (RA, because dopamine is implicated in regulating song output. We measured the levels of serotonin and its principal metabolite in all four brain regions because this monoamine is implicated in perception and behavioral output and is found throughout the avian forebrain. After controlling for recent singing, we found that males exposed to more challenging song had higher levels of norepinephrine metabolite in the CMM and lower levels of serotonin in the RA. Collectively, these findings are consistent with norepinephrine in perceptual brain regions and serotonin in song control regions contributing to neuroplasticity that underlies socially-induced changes in behavioral state.

  10. Song-associated reward correlates with endocannabinoid-related gene expression in male European starlings (Sturnus vulgaris).

    Science.gov (United States)

    Hahn, Allison H; Merullo, Devin P; Spool, Jeremy A; Angyal, Caroline S; Stevenson, Sharon A; Riters, Lauren V

    2017-03-27

    Vocal communication is required for successful social interactions in numerous species. During the breeding season, songbirds produce songs that are reinforced by behavioral consequences (e.g., copulation). However, some songbirds also produce songs not obviously directed at other individuals. The consequences maintaining or reinforcing these songs are less obvious and the neural mechanisms associated with undirected communication are not well-understood. Previous studies indicate that undirected singing is intrinsically rewarding and mediated by opioid or dopaminergic systems; however, endocannabinoids are also involved in regulating reward and singing behavior. We used a conditioned place preference paradigm to examine song-associated reward in European starlings and quantitative real-time PCR to measure expression of endocannabinoid-related neural markers (CB 1 , FABP7, FABP5, FAAH, DAGLα), in brain regions involved in social behavior, reward and motivation (ventral tegmental area [VTA], periaqueductal gray [PAG], and medial preoptic nucleus [POM]), and a song control region (Area X). Our results indicate that starlings producing high rates of song developed a conditioned place preference, suggesting that undirected song is associated with a positive affective state. We found a significant positive relationship between song-associated reward and CB 1 receptors in VTA and a significant negative relationship between song-associated reward and CB 1 in PAG. There was a significant positive relationship between reward and the cannabinoid transporter FABP7 in POM and a significant negative relationship between reward and FABP7 in PAG. In Area X, FABP5 and DAGLα correlated positively with singing. These results suggest a role for endocannabinoid signaling in vocal production and reward associated with undirected communication. Copyright © 2017 IBRO. Published by Elsevier Ltd. All rights reserved.

  11. SSTRAP: A computational model for genomic motif discovery ...

    African Journals Online (AJOL)

    Computational methods can potentially provide high-quality prediction of biological molecules such as DNA binding sites and Transcription factors and therefore reduce the time needed for experimental verification and challenges associated with experimental methods. These biological molecules or motifs have significant ...

  12. Identification of a Baeyer-Villiger monooxygenase sequence motif

    NARCIS (Netherlands)

    Fraaije, MW; Kamerbeek, NM; van Berkel, WJH; Janssen, DB; Kamerbeek, Nanne M.; Berkel, Willem J.H. van

    2002-01-01

    Baeyer-Villiger monooxygenases (BVMOs) form a distinct class of flavoproteins that catalyze the insertion of an oxygen atom in a C-C bond using dioxygen and NAD(P)H. Using newly characterized BVMO sequences, we have uncovered a BVMO-identifying sequence motif: FXGXXXRXXXW(P/D). Studies with

  13. Linear motif atlas for phosphorylation-dependent signaling

    DEFF Research Database (Denmark)

    Miller, Martin Lee; Jensen, LJ; Diella, F

    2008-01-01

    bind to them remains a challenge. NetPhorest is an atlas of consensus sequence motifs that covers 179 kinases and 104 phosphorylation-dependent binding domains [Src homology 2 (SH2), phosphotyrosine binding (PTB), BRCA1 C-terminal (BRCT), WW, and 14-3-3]. The atlas reveals new aspects of signaling...

  14. [Cover motifs of the Tidsskrift. A 14-year cavalcade].

    Science.gov (United States)

    Nylenna, M

    1998-12-10

    In 1985 the Journal of the Norwegian Medical Association changed its cover policy, moving the table of contents inside the Journal and introducing cover illustrations. This article provides an analysis of all cover illustrations published over this 14-year period, 420 covers in all. There is a great variation in cover motifs and designs and a development towards more general motifs. The initial emphasis on historical and medical aspects is now less pronounced, while the use of works of art and nature motifs has increased, and the cover now more often has a direct bearing on the specific contents of the issue. Professor of medical history Oivind Larsen has photographed two thirds of the covers and contributed 95% of the inside essay-style reflections on the cover motif. Over the years, he has expanded the role of the historian of medicine disseminating knowledge to include that of the raconteur with a personal tone of voice. The Journal's covers are now one of its most characteristic features, emblematic of the Journal's ambition of standing for quality and timelessness vis-à-vis the news media, and of its aim of bridging the gap between medicine and the humanities.

  15. Perspektif Psikologi Humanistik Abraham Maslow dalam Meninjau Motif Pelaku Pembunuhan

    OpenAIRE

    Nurwatie, Azrina; Fauzia, Rahmi; Akbar, Sukma Noor

    2014-01-01

    Fokus penelitian ini diarahkan pada motif pelaku pembunuhan dengan meninjaunya melalui perspektif psikologi humanistik Abraham Maslow. Subyek dalam penelitian ini berjumlah dua orang narapidana yang berada di Lapas Kelas IIA Anak Martapura dengan kasus pembunuhan. Metode penelitian yang digunakan dalam penelitian ini adalah metode penelitian kualitatif. Teknik pengumpulan data melalui wawancara, observasi, dokumentasi,dan pemeriksaan psikologis (tes grafis). Berdasarkan hasil analisis data da...

  16. Motifs in triadic random graphs based on Steiner triple systems

    Science.gov (United States)

    Winkler, Marco; Reichardt, Jörg

    2013-08-01

    Conventionally, pairwise relationships between nodes are considered to be the fundamental building blocks of complex networks. However, over the last decade, the overabundance of certain subnetwork patterns, i.e., the so-called motifs, has attracted much attention. It has been hypothesized that these motifs, instead of links, serve as the building blocks of network structures. Although the relation between a network's topology and the general properties of the system, such as its function, its robustness against perturbations, or its efficiency in spreading information, is the central theme of network science, there is still a lack of sound generative models needed for testing the functional role of subgraph motifs. Our work aims to overcome this limitation. We employ the framework of exponential random graph models (ERGMs) to define models based on triadic substructures. The fact that only a small portion of triads can actually be set independently poses a challenge for the formulation of such models. To overcome this obstacle, we use Steiner triple systems (STSs). These are partitions of sets of nodes into pair-disjoint triads, which thus can be specified independently. Combining the concepts of ERGMs and STSs, we suggest generative models capable of generating ensembles of networks with nontrivial triadic Z-score profiles. Further, we discover inevitable correlations between the abundance of triad patterns, which occur solely for statistical reasons and need to be taken into account when discussing the functional implications of motif statistics. Moreover, we calculate the degree distributions of our triadic random graphs analytically.

  17. Genetic analysis of beta1 integrin "activation motifs" in mice

    DEFF Research Database (Denmark)

    Czuchra, Aleksandra; Meyer, Hannelore; Legate, Kyle R

    2006-01-01

    -null phenotype in vivo. Surprisingly, neither the substitution of the tyrosines with phenylalanine nor the aspartic acid with alanine resulted in an obvious defect. These data suggest that the NPXY motifs of the beta1 integrin tail are essential for beta1 integrin function, whereas tyrosine phosphorylation...

  18. Insights into the motif preference of APOBEC3 enzymes.

    Directory of Open Access Journals (Sweden)

    Diako Ebrahimi

    Full Text Available We used a multivariate data analysis approach to identify motifs associated with HIV hypermutation by different APOBEC3 enzymes. The analysis showed that APOBEC3G targets G mainly within GG, TG, TGG, GGG, TGGG and also GGGT. The G nucleotides flanked by a C at the 3' end (in +1 and +2 positions were indicated as disfavoured targets by APOBEC3G. The G nucleotides within GGGG were found to be targeted at a frequency much less than what is expected. We found that the infrequent G-to-A mutation within GGGG is not limited to the inaccessibility, to APOBEC3, of poly Gs in the central and 3'polypurine tracts (PPTs which remain double stranded during the HIV reverse transcription. GGGG motifs outside the PPTs were also disfavoured. The motifs GGAG and GAGG were also found to be disfavoured targets for APOBEC3. The motif-dependent mutation of G within the HIV genome by members of the APOBEC3 family other than APOBEC3G was limited to GA→AA changes. The results did not show evidence of other types of context dependent G-to-A changes in the HIV genome.

  19. Appreciation of Igbo Folktales and Songs Versus Realism | Ogbalu ...

    African Journals Online (AJOL)

    Igbo folktales are fiction. Folktales are regarded as fictitious, senseless and totally devoid of truth and reality and totally removed from real life situation and events. Nevertheless in their functionality, one discovers that folktales exhibit some elements of truth that somehow translate them into realism and true life situation.

  20. Identification of Predictive Cis-Regulatory Elements Using a Discriminative Objective Function and a Dynamic Search Space.

    Directory of Open Access Journals (Sweden)

    Rahul Karnik

    Full Text Available The generation of genomic binding or accessibility data from massively parallel sequencing technologies such as ChIP-seq and DNase-seq continues to accelerate. Yet state-of-the-art computational approaches for the identification of DNA binding motifs often yield motifs of weak predictive power. Here we present a novel computational algorithm called MotifSpec, designed to find predictive motifs, in contrast to over-represented sequence elements. The key distinguishing feature of this algorithm is that it uses a dynamic search space and a learned threshold to find discriminative motifs in combination with the modeling of motifs using a full PWM (position weight matrix rather than k-mer words or regular expressions. We demonstrate that our approach finds motifs corresponding to known binding specificities in several mammalian ChIP-seq datasets, and that our PWMs classify the ChIP-seq signals with accuracy comparable to, or marginally better than motifs from the best existing algorithms. In other datasets, our algorithm identifies novel motifs where other methods fail. Finally, we apply this algorithm to detect motifs from expression datasets in C. elegans using a dynamic expression similarity metric rather than fixed expression clusters, and find novel predictive motifs.